HHsearch alignment for GI: 254780916 and conserved domain: cd04160
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=90.79 E-value=1.2 Score=24.16 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=17.3
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 48873277743679999998
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIH 184 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH 184 (482)
T Consensus 1 ~ivilG~~~~GKTsll~~l~ 20 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLK 20 (167)
T ss_pred CEEEECCCCCCHHHHHHHHH
T ss_conf 99999999988889999887