Query gi|254780916|ref|YP_003065329.1| putative sigma-54-dependent transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 482
No_of_seqs 221 out of 18694
Neff 7.7
Searched_HMMs 39220
Date Mon May 30 02:37:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780916.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2204 AtoC Response regulato 100.0 0 0 955.1 29.6 452 7-481 1-460 (464)
2 TIGR01818 ntrC nitrogen regula 100.0 0 0 954.3 20.1 458 13-475 1-471 (471)
3 PRK11361 acetoacetate metaboli 100.0 0 0 921.1 31.0 447 7-478 1-457 (457)
4 TIGR02915 PEP_resp_reg putativ 100.0 0 0 916.8 17.1 434 13-478 1-451 (451)
5 PRK10923 glnG nitrogen regulat 100.0 0 0 888.0 30.3 461 10-478 3-469 (469)
6 PRK10365 transcriptional regul 100.0 0 0 878.6 28.9 435 7-474 1-441 (441)
7 TIGR01817 nifA Nif-specific re 100.0 0 0 782.7 11.9 464 13-482 42-574 (574)
8 COG3829 RocR Transcriptional r 100.0 0 0 736.9 13.8 320 133-478 238-560 (560)
9 PRK05022 anaerobic nitric oxid 100.0 0 0 704.8 19.1 319 139-479 185-510 (510)
10 COG3604 FhlA Transcriptional r 100.0 0 0 705.6 15.6 330 136-481 219-549 (550)
11 PRK10820 DNA-binding transcrip 100.0 0 0 662.5 16.8 312 134-480 198-509 (513)
12 TIGR02974 phageshock_pspF psp 100.0 0 0 661.5 11.8 334 142-475 1-349 (349)
13 PRK11388 DNA-binding transcrip 100.0 0 0 637.9 18.5 315 135-481 320-634 (639)
14 PRK11608 pspF phage shock prot 100.0 0 0 637.0 18.3 319 139-477 5-325 (325)
15 TIGR02329 propionate_PrpR prop 100.0 0 0 630.1 11.0 352 102-474 282-658 (658)
16 COG3284 AcoR Transcriptional a 100.0 0 0 579.1 12.5 289 143-479 316-606 (606)
17 COG3283 TyrR Transcriptional r 100.0 0 0 551.8 14.9 313 134-480 198-510 (511)
18 COG1221 PspF Transcriptional r 100.0 0 0 545.4 13.7 328 134-480 72-401 (403)
19 pfam00158 Sigma54_activat Sigm 100.0 0 0 374.4 6.8 167 142-308 1-168 (168)
20 COG4650 RtcR Sigma54-dependent 100.0 9.8E-45 0 335.9 8.1 317 140-480 184-523 (531)
21 TIGR02154 PhoB phosphate regul 99.9 1.2E-26 3.2E-31 207.8 8.6 169 10-194 2-174 (226)
22 PRK10693 response regulator of 99.9 1.2E-24 3E-29 193.9 12.2 121 9-129 6-129 (337)
23 PRK10046 dpiA two-component re 99.9 7.4E-24 1.9E-28 188.3 12.9 121 7-127 1-125 (225)
24 PRK09468 ompR osmolarity respo 99.9 1.1E-23 2.7E-28 187.2 11.8 122 7-128 2-125 (239)
25 PRK11083 DNA-binding response 99.9 3.7E-23 9.5E-28 183.3 12.4 121 7-128 1-123 (229)
26 PRK09581 pleD response regulat 99.9 5.3E-23 1.4E-27 182.2 12.0 116 10-125 2-121 (457)
27 PRK09836 DNA-binding transcrip 99.9 6.6E-23 1.7E-27 181.5 11.2 117 11-127 1-119 (226)
28 PRK10161 transcriptional regul 99.9 1.1E-22 2.8E-27 180.0 12.0 118 10-127 2-123 (229)
29 PRK10336 DNA-binding transcrip 99.9 6.1E-23 1.6E-27 181.7 10.5 117 11-127 1-119 (219)
30 CHL00148 orf27 Ycf27; Reviewed 99.9 5.9E-23 1.5E-27 181.9 9.3 120 8-128 4-125 (240)
31 PRK10430 DNA-binding transcrip 99.9 2.6E-22 6.6E-27 177.3 11.5 116 10-125 1-122 (239)
32 pfam00072 Response_reg Respons 99.9 4.2E-22 1.1E-26 175.9 12.3 109 13-121 1-111 (111)
33 PRK10610 chemotaxis regulatory 99.9 4.6E-22 1.2E-26 175.6 12.3 121 7-127 1-127 (129)
34 PRK11517 transcriptional regul 99.9 5.7E-22 1.4E-26 174.9 12.0 116 11-127 1-118 (223)
35 PRK10529 DNA-binding transcrip 99.9 2.3E-22 5.9E-27 177.7 9.0 118 10-128 1-120 (225)
36 PRK09390 fixJ response regulat 99.9 1E-21 2.6E-26 173.1 11.4 118 9-126 2-121 (202)
37 PRK10701 DNA-binding transcrip 99.9 2.2E-22 5.7E-27 177.8 7.9 119 10-129 1-121 (240)
38 PRK11173 two-component respons 99.9 1.5E-21 3.8E-26 171.9 11.5 120 7-128 1-122 (237)
39 PRK10643 DNA-binding transcrip 99.9 2.7E-21 6.9E-26 170.1 11.8 118 11-128 1-120 (222)
40 cd00156 REC Signal receiver do 99.9 2.1E-21 5.4E-26 170.9 11.2 111 14-124 1-113 (113)
41 PRK10955 DNA-binding transcrip 99.9 8.5E-22 2.2E-26 173.7 9.2 117 10-128 1-119 (232)
42 PRK10710 DNA-binding transcrip 99.9 2.3E-21 5.8E-26 170.6 11.1 120 8-128 8-129 (240)
43 PRK10766 DNA-binding transcrip 99.9 1.7E-21 4.2E-26 171.6 10.1 119 10-129 2-122 (224)
44 PRK13557 histidine kinase; Pro 99.9 6.1E-21 1.6E-25 167.6 12.6 118 9-126 412-533 (538)
45 PRK10816 DNA-binding transcrip 99.9 2.8E-21 7.1E-26 170.0 10.2 117 11-127 1-119 (223)
46 COG0745 OmpR Response regulato 99.9 7.9E-21 2E-25 166.9 12.4 118 11-129 1-121 (229)
47 COG4566 TtrR Response regulato 99.9 2.9E-21 7.4E-26 169.9 9.4 126 7-132 1-128 (202)
48 TIGR01387 cztR_silR_copR heavy 99.9 3.5E-22 8.8E-27 176.4 4.2 129 13-142 1-131 (219)
49 PRK13856 two-component respons 99.8 1.2E-20 3E-25 165.7 11.4 118 10-128 1-121 (241)
50 COG4753 Response regulator con 99.8 6.4E-21 1.6E-25 167.5 9.5 117 10-126 1-122 (475)
51 PRK10841 hybrid sensory kinase 99.8 2.2E-20 5.5E-25 163.7 12.1 116 9-124 823-940 (947)
52 PRK11107 hybrid sensory histid 99.8 5.2E-20 1.3E-24 161.1 13.8 115 10-124 668-786 (920)
53 PRK09959 hybrid sensory histid 99.8 5.8E-20 1.5E-24 160.7 12.9 116 7-122 955-1072(1197)
54 PRK00742 chemotaxis-specific m 99.8 6.4E-19 1.6E-23 153.4 15.9 174 10-198 2-190 (345)
55 PRK13435 response regulator; P 99.8 8.4E-20 2.1E-24 159.6 10.5 117 10-130 1-121 (141)
56 PRK11466 hybrid sensory histid 99.8 3.1E-19 7.9E-24 155.6 12.6 117 9-125 680-799 (912)
57 TIGR02902 spore_lonB ATP-depen 99.8 9E-20 2.3E-24 159.4 8.3 242 123-388 48-331 (532)
58 PRK11091 aerobic respiration c 99.8 1.1E-18 2.9E-23 151.6 13.3 116 9-125 524-644 (779)
59 PRK12555 chemotaxis-specific m 99.8 6.5E-18 1.7E-22 146.2 15.2 163 10-188 1-178 (340)
60 TIGR02903 spore_lon_C ATP-depe 99.8 7.2E-19 1.8E-23 153.0 7.2 192 135-356 150-389 (616)
61 COG3437 Response regulator con 99.8 3.9E-18 1E-22 147.8 10.5 124 1-124 5-133 (360)
62 COG4565 CitB Response regulato 99.8 4.5E-18 1.1E-22 147.4 9.7 116 12-127 2-121 (224)
63 TIGR02875 spore_0_A sporulatio 99.7 1.2E-17 3.2E-22 144.2 9.6 117 10-126 2-124 (270)
64 PRK10403 transcriptional regul 99.7 1.9E-17 4.9E-22 142.9 9.8 120 7-126 3-126 (215)
65 PRK10651 transcriptional regul 99.7 1.6E-17 4E-22 143.6 8.1 121 7-127 3-127 (216)
66 PRK13837 two-component VirA-li 99.7 1.1E-16 2.7E-21 137.6 11.5 120 9-130 698-821 (831)
67 PRK09958 DNA-binding transcrip 99.7 5.7E-17 1.5E-21 139.6 9.8 116 11-126 1-119 (204)
68 COG3706 PleD Response regulato 99.7 7.6E-17 1.9E-21 138.7 9.9 122 9-130 131-256 (435)
69 PRK09483 response regulator; P 99.7 1.5E-16 3.8E-21 136.6 10.4 118 10-127 1-122 (216)
70 PRK09935 transcriptional regul 99.7 4.4E-16 1.1E-20 133.3 10.4 119 9-127 2-124 (210)
71 COG3947 Response regulator con 99.7 2.7E-16 6.8E-21 134.8 8.4 123 11-135 1-125 (361)
72 COG2197 CitB Response regulato 99.7 2.1E-15 5.3E-20 128.5 11.6 117 11-127 1-121 (211)
73 KOG0519 consensus 99.6 2E-15 5.1E-20 128.6 10.5 117 8-124 664-784 (786)
74 COG4567 Response regulator con 99.6 3.5E-15 9E-20 126.9 10.4 116 7-122 5-123 (182)
75 PRK10840 transcriptional regul 99.6 5.2E-15 1.3E-19 125.7 10.9 116 10-125 3-125 (216)
76 PRK10360 DNA-binding transcrip 99.6 2.2E-14 5.6E-19 121.3 10.4 115 10-127 1-119 (196)
77 PRK11697 putative two-componen 99.6 4.3E-14 1.1E-18 119.2 10.7 115 10-127 1-119 (239)
78 COG0784 CheY FOG: CheY-like re 99.6 1.1E-13 2.7E-18 116.4 12.4 113 9-121 4-121 (130)
79 TIGR02956 TMAO_torS TMAO reduc 99.6 1.6E-14 4E-19 122.3 7.8 118 7-124 758-886 (1052)
80 PRK09191 two-component respons 99.5 2.8E-14 7.1E-19 120.6 8.9 113 10-125 137-253 (261)
81 COG2201 CheB Chemotaxis respon 99.5 8.6E-13 2.2E-17 110.0 14.5 175 10-197 1-190 (350)
82 cd00009 AAA The AAA+ (ATPases 99.5 1.7E-14 4.2E-19 122.2 4.8 135 161-311 17-151 (151)
83 PRK13765 ATP-dependent proteas 99.5 2.2E-13 5.6E-18 114.2 10.3 205 171-387 161-398 (637)
84 pfam07724 AAA_2 AAA domain (Cd 99.5 6.9E-14 1.8E-18 117.8 6.7 127 164-290 4-132 (168)
85 PRK13558 bacterio-opsin activa 99.5 1.6E-14 4.1E-19 122.2 2.9 112 12-125 19-132 (674)
86 PRK13407 bchI magnesium chelat 99.4 5.2E-13 1.3E-17 111.6 8.1 161 136-312 4-202 (334)
87 PRK10100 DNA-binding transcrip 99.4 3.2E-12 8.3E-17 106.0 9.0 119 9-128 9-129 (216)
88 pfam07726 AAA_3 ATPase family 99.4 1.4E-12 3.5E-17 108.6 6.5 110 165-283 1-112 (131)
89 PRK11034 clpA ATP-dependent Cl 99.4 3.3E-12 8.3E-17 105.9 8.4 342 11-370 279-713 (758)
90 pfam07728 AAA_5 AAA domain (dy 99.4 2.7E-12 6.9E-17 106.5 7.6 115 165-284 1-124 (139)
91 PRK13342 recombination factor 99.3 1.2E-11 3.2E-16 101.8 10.2 210 136-388 9-223 (417)
92 PRK10865 protein disaggregatio 99.3 6.7E-12 1.7E-16 103.7 5.4 222 141-370 569-826 (857)
93 CHL00095 clpC Clp protease ATP 99.3 1.5E-11 3.7E-16 101.3 6.8 223 140-370 509-781 (823)
94 PRK13341 recombination factor 99.3 1.8E-11 4.6E-16 100.7 7.1 201 134-373 22-226 (726)
95 TIGR03345 VI_ClpV1 type VI sec 99.2 7E-12 1.8E-16 103.6 4.8 221 140-370 566-828 (852)
96 TIGR03346 chaperone_ClpB ATP-d 99.2 2.2E-11 5.6E-16 100.1 6.5 223 140-370 565-823 (852)
97 CHL00081 chlI Mg-protoporyphyr 99.2 3.3E-11 8.5E-16 98.8 6.4 158 135-303 7-205 (347)
98 PRK00440 rfc replication facto 99.2 7.5E-10 1.9E-14 89.3 11.8 208 137-387 13-223 (318)
99 PRK01905 DNA-binding protein F 99.1 7.1E-11 1.8E-15 96.5 5.9 49 429-477 28-76 (77)
100 COG3707 AmiR Response regulato 99.1 2.1E-10 5.4E-15 93.1 8.3 120 9-129 4-126 (194)
101 PRK00430 fis DNA-binding prote 99.1 8.4E-11 2.2E-15 96.0 6.1 52 427-478 47-98 (98)
102 pfam00493 MCM MCM2/3/5 family. 99.1 6.6E-10 1.7E-14 89.6 10.6 114 161-283 55-173 (327)
103 COG0542 clpA ATP-binding subun 99.1 2E-10 5.1E-15 93.3 7.5 223 140-370 491-752 (786)
104 COG2256 MGS1 ATPase related to 99.1 3.8E-10 9.7E-15 91.3 8.5 204 136-388 26-237 (436)
105 COG0714 MoxR-like ATPases [Gen 99.1 1.2E-10 3.1E-15 94.9 5.7 144 152-303 32-181 (329)
106 pfam01078 Mg_chelatase Magnesi 99.1 1.4E-10 3.7E-15 94.3 5.6 142 139-284 2-159 (207)
107 CHL00195 ycf46 Ycf46; Provisio 99.1 4E-10 1E-14 91.2 7.1 184 162-387 258-461 (491)
108 COG1239 ChlI Mg-chelatase subu 99.0 1.3E-09 3.3E-14 87.5 8.8 158 135-303 12-210 (423)
109 pfam05496 RuvB_N Holliday junc 99.0 6.2E-10 1.6E-14 89.8 6.4 200 135-372 19-229 (234)
110 pfam02954 HTH_8 Bacterial regu 99.0 5.3E-10 1.4E-14 90.3 5.4 42 434-475 1-42 (42)
111 PRK11475 DNA-binding transcrip 99.0 2.2E-09 5.5E-14 86.0 8.4 103 23-125 3-114 (205)
112 COG3279 LytT Response regulato 99.0 1E-09 2.6E-14 88.3 6.3 115 10-126 1-119 (244)
113 PRK00080 ruvB Holliday junctio 99.0 1E-08 2.6E-13 81.2 11.3 253 135-475 20-300 (328)
114 PRK12402 replication factor C 99.0 6.3E-09 1.6E-13 82.7 10.0 209 137-385 12-246 (337)
115 smart00350 MCM minichromosome 98.9 9E-09 2.3E-13 81.6 9.8 114 161-283 234-352 (509)
116 PRK13406 bchD magnesium chelat 98.9 3.9E-08 1E-12 77.1 12.0 209 165-386 27-247 (584)
117 PRK08903 hypothetical protein; 98.8 2.4E-08 6.1E-13 78.6 9.2 209 131-386 9-223 (227)
118 PRK04195 replication factor C 98.8 2E-08 5.1E-13 79.2 8.6 203 137-384 11-221 (403)
119 TIGR03420 DnaA_homol_Hda DnaA 98.8 2.2E-08 5.7E-13 78.8 8.9 208 133-383 8-222 (226)
120 PRK03992 proteasome-activating 98.8 2E-08 5.2E-13 79.1 8.0 217 133-388 125-372 (390)
121 CHL00176 ftsH cell division pr 98.8 1.8E-08 4.6E-13 79.5 7.7 217 132-387 169-415 (631)
122 CHL00181 cbbX CbbX; Provisiona 98.8 1.8E-08 4.5E-13 79.6 7.6 166 161-371 57-253 (287)
123 COG2901 Fis Factor for inversi 98.8 8.9E-09 2.3E-13 81.7 5.7 50 428-477 48-97 (98)
124 PRK10787 DNA-binding ATP-depen 98.8 2.1E-08 5.2E-13 79.1 7.5 201 161-391 346-584 (784)
125 TIGR02442 Cob-chelat-sub cobal 98.8 1E-08 2.6E-13 81.2 5.5 239 139-386 3-306 (688)
126 TIGR00763 lon ATP-dependent pr 98.8 2.4E-09 6.1E-14 85.7 2.3 177 161-369 446-658 (941)
127 TIGR01241 FtsH_fam ATP-depende 98.8 4.6E-09 1.2E-13 83.7 3.4 219 126-388 45-299 (505)
128 COG1067 LonB Predicted ATP-dep 98.7 3.3E-08 8.4E-13 77.6 6.9 226 159-389 127-399 (647)
129 TIGR00635 ruvB Holliday juncti 98.7 4.5E-08 1.1E-12 76.7 6.8 241 138-472 2-276 (305)
130 TIGR02640 gas_vesic_GvpN gas v 98.7 3.2E-08 8.2E-13 77.7 5.7 158 145-310 3-185 (265)
131 PRK05642 DNA replication initi 98.7 1.1E-07 2.9E-12 73.9 8.3 210 131-383 10-229 (234)
132 KOG0730 consensus 98.7 2.6E-08 6.7E-13 78.3 5.0 175 161-376 466-656 (693)
133 PRK08084 DNA replication initi 98.7 6E-08 1.5E-12 75.8 6.7 208 130-382 12-229 (235)
134 pfam00308 Bac_DnaA Bacterial d 98.7 4.2E-08 1.1E-12 76.9 5.5 202 135-372 3-216 (219)
135 TIGR02040 PpsR-CrtJ transcript 98.6 4.7E-08 1.2E-12 76.5 5.3 45 433-477 409-453 (453)
136 COG1222 RPT1 ATP-dependent 26S 98.6 7.5E-08 1.9E-12 75.1 6.1 217 133-388 144-391 (406)
137 PRK09862 putative ATP-dependen 98.6 4E-08 1E-12 77.1 4.6 133 137-284 188-347 (506)
138 PRK08727 hypothetical protein; 98.6 1.8E-07 4.5E-12 72.5 7.8 208 133-383 12-225 (233)
139 COG0466 Lon ATP-dependent Lon 98.6 2.3E-08 5.8E-13 78.8 3.1 265 162-465 348-658 (782)
140 PRK10733 hflB ATP-dependent me 98.6 1.3E-07 3.3E-12 73.4 7.0 219 132-389 144-392 (644)
141 KOG0480 consensus 98.6 2.6E-07 6.7E-12 71.3 8.4 210 161-386 376-640 (764)
142 COG2255 RuvB Holliday junction 98.6 8.3E-07 2.1E-11 67.8 10.9 258 136-477 22-303 (332)
143 COG3706 PleD Response regulato 98.6 1E-07 2.6E-12 74.2 5.9 141 35-186 13-155 (435)
144 PRK05563 DNA polymerase III su 98.6 3E-07 7.6E-12 70.9 8.3 217 135-390 11-245 (541)
145 PRK06645 DNA polymerase III su 98.6 1.6E-06 4E-11 65.8 11.9 213 135-389 16-256 (507)
146 KOG1051 consensus 98.6 2.7E-07 6.8E-12 71.2 7.3 230 141-377 563-838 (898)
147 PRK00411 cdc6 cell division co 98.6 8.3E-07 2.1E-11 67.7 9.7 231 138-387 28-280 (394)
148 PRK05342 clpX ATP-dependent pr 98.5 1.2E-07 3.1E-12 73.6 5.3 91 162-262 108-217 (411)
149 PRK07270 DNA polymerase III su 98.5 5.6E-07 1.4E-11 68.9 8.1 215 135-389 10-244 (557)
150 PRK09581 pleD response regulat 98.5 5E-07 1.3E-11 69.3 7.9 117 9-126 154-274 (457)
151 smart00448 REC cheY-homologous 98.5 5.8E-07 1.5E-11 68.8 8.1 53 11-63 1-55 (55)
152 COG1241 MCM2 Predicted ATPase 98.5 4.8E-06 1.2E-10 62.4 12.6 215 161-387 317-590 (682)
153 pfam06490 FleQ Flagellar regul 98.5 1.1E-06 2.8E-11 66.9 8.7 106 12-124 1-108 (109)
154 PRK00149 dnaA chromosomal repl 98.5 3.3E-07 8.4E-12 70.6 5.9 221 133-387 112-344 (447)
155 COG0606 Predicted ATPase with 98.5 1E-07 2.6E-12 74.2 3.2 140 136-290 175-342 (490)
156 TIGR00382 clpX ATP-dependent C 98.4 4.9E-07 1.2E-11 69.4 6.2 200 52-280 35-288 (452)
157 PRK06893 DNA replication initi 98.4 9.6E-07 2.5E-11 67.3 7.5 207 133-383 9-224 (229)
158 PRK13531 regulatory ATPase Rav 98.4 7.8E-08 2E-12 75.0 1.9 151 152-316 28-184 (498)
159 TIGR01242 26Sp45 26S proteasom 98.4 3.7E-07 9.4E-12 70.2 5.3 213 132-384 114-358 (364)
160 TIGR02928 TIGR02928 orc1/cdc6 98.4 1.4E-07 3.5E-12 73.2 3.0 228 135-386 10-285 (383)
161 KOG0731 consensus 98.4 6.8E-07 1.7E-11 68.4 6.4 216 133-387 304-551 (774)
162 pfam00004 AAA ATPase family as 98.4 7E-08 1.8E-12 75.4 1.3 96 166-283 1-110 (131)
163 PRK07003 DNA polymerase III su 98.4 1.3E-05 3.3E-10 59.3 12.7 222 134-389 10-244 (816)
164 PRK12422 chromosomal replicati 98.4 6.6E-07 1.7E-11 68.4 5.9 220 133-386 104-340 (455)
165 PRK11107 hybrid sensory histid 98.4 9E-06 2.3E-10 60.4 11.5 112 9-122 535-648 (920)
166 TIGR02397 dnaX_nterm DNA polym 98.3 2.9E-06 7.3E-11 63.9 8.2 215 132-390 6-245 (363)
167 PRK06305 DNA polymerase III su 98.3 5.7E-06 1.5E-10 61.8 9.5 219 134-390 11-247 (462)
168 PRK07764 DNA polymerase III su 98.3 2.8E-06 7.2E-11 64.0 7.8 223 135-389 10-246 (775)
169 PRK08451 DNA polymerase III su 98.3 7.1E-06 1.8E-10 61.1 9.5 216 135-388 9-241 (523)
170 KOG0733 consensus 98.3 1.1E-06 2.7E-11 67.0 5.2 195 136-370 186-409 (802)
171 KOG2028 consensus 98.3 4.4E-07 1.1E-11 69.7 3.1 219 129-389 127-368 (554)
172 CHL00095 clpC Clp protease ATP 98.3 1.2E-06 3E-11 66.7 5.0 206 135-369 174-423 (823)
173 PRK08853 DNA polymerase III su 98.3 2.8E-05 7.1E-10 57.0 12.0 222 134-389 10-244 (717)
174 TIGR03015 pepcterm_ATPase puta 98.3 3.4E-06 8.8E-11 63.4 7.3 226 142-384 21-261 (269)
175 KOG0478 consensus 98.3 3.4E-06 8.8E-11 63.4 7.1 116 161-282 460-577 (804)
176 PRK10865 protein disaggregatio 98.3 1.3E-06 3.3E-11 66.4 4.9 200 135-368 173-422 (857)
177 PRK05201 hslU ATP-dependent pr 98.3 2.6E-06 6.6E-11 64.2 6.3 128 233-370 248-403 (442)
178 PRK06647 DNA polymerase III su 98.3 1E-05 2.6E-10 60.0 9.2 221 134-389 10-244 (560)
179 PRK06674 DNA polymerase III su 98.2 4.8E-06 1.2E-10 62.3 7.5 211 135-388 11-243 (563)
180 KOG0745 consensus 98.2 1.5E-06 3.7E-11 66.0 4.7 94 161-265 224-336 (564)
181 PRK07994 DNA polymerase III su 98.2 3.9E-05 1E-09 55.9 12.0 222 134-389 10-244 (643)
182 TIGR02881 spore_V_K stage V sp 98.2 2.6E-06 6.6E-11 64.3 5.9 165 161-370 40-236 (261)
183 KOG2004 consensus 98.2 1.2E-06 3.2E-11 66.5 4.1 176 162-369 436-642 (906)
184 TIGR02639 ClpA ATP-dependent C 98.2 9.4E-07 2.4E-11 67.4 3.4 217 140-369 497-751 (774)
185 TIGR00368 TIGR00368 Mg chelata 98.2 4.3E-07 1.1E-11 69.8 1.4 251 22-285 40-353 (505)
186 PRK09111 DNA polymerase III su 98.2 2.4E-05 6.2E-10 57.4 10.4 215 134-390 17-257 (600)
187 PRK08691 DNA polymerase III su 98.2 5.4E-05 1.4E-09 54.9 12.0 218 134-389 10-244 (704)
188 COG0593 DnaA ATPase involved i 98.2 2.9E-06 7.3E-11 63.9 5.4 221 131-388 78-312 (408)
189 TIGR02031 BchD-ChlD magnesium 98.2 1E-05 2.6E-10 60.1 8.2 216 166-386 20-306 (705)
190 TIGR03346 chaperone_ClpB ATP-d 98.2 1.6E-06 4.1E-11 65.7 3.9 200 135-368 168-417 (852)
191 COG1223 Predicted ATPase (AAA+ 98.1 1.2E-06 3.1E-11 66.5 2.4 166 132-330 113-300 (368)
192 COG0464 SpoVK ATPases of the A 98.1 1.3E-06 3.3E-11 66.3 2.2 193 162-387 275-481 (494)
193 TIGR03345 VI_ClpV1 type VI sec 98.1 4.1E-06 1.1E-10 62.8 4.7 204 135-369 182-432 (852)
194 KOG0734 consensus 98.1 9.1E-06 2.3E-10 60.4 6.5 210 134-384 298-536 (752)
195 KOG0733 consensus 98.1 4.5E-06 1.1E-10 62.6 4.4 130 162-317 544-686 (802)
196 COG1219 ClpX ATP-dependent pro 98.1 7.2E-06 1.8E-10 61.1 5.4 96 159-268 93-213 (408)
197 COG4567 Response regulator con 98.1 2.8E-05 7.2E-10 56.9 8.4 42 434-475 138-179 (182)
198 PRK08770 DNA polymerase III su 98.1 0.00014 3.5E-09 52.0 11.9 222 134-389 10-244 (663)
199 PRK09087 hypothetical protein; 98.0 3.6E-05 9.1E-10 56.2 8.3 199 135-386 16-219 (226)
200 PHA02244 ATPase-like protein 98.0 1.1E-05 2.9E-10 59.7 5.6 130 143-283 99-230 (383)
201 PRK05896 DNA polymerase III su 98.0 5.9E-05 1.5E-09 54.7 9.1 209 135-388 11-243 (613)
202 PRK11034 clpA ATP-dependent Cl 98.0 2.6E-06 6.7E-11 64.2 2.0 154 135-317 181-356 (758)
203 KOG0727 consensus 98.0 1E-05 2.6E-10 60.1 4.7 136 152-319 180-332 (408)
204 PRK07133 DNA polymerase III su 98.0 5.5E-05 1.4E-09 54.9 8.1 209 135-387 13-241 (718)
205 smart00382 AAA ATPases associa 97.9 7.4E-06 1.9E-10 61.0 3.5 118 163-283 2-125 (148)
206 COG0465 HflB ATP-dependent Zn 97.9 8.5E-06 2.2E-10 60.6 2.9 214 134-387 144-388 (596)
207 PRK06872 DNA polymerase III su 97.9 0.00022 5.5E-09 50.7 10.1 223 134-390 10-245 (696)
208 PRK06620 hypothetical protein; 97.9 0.00025 6.4E-09 50.2 10.3 163 163-382 44-209 (214)
209 PRK05648 DNA polymerase III su 97.9 0.00016 4E-09 51.6 8.9 223 134-390 10-245 (705)
210 PRK08116 hypothetical protein; 97.8 1.9E-05 4.9E-10 58.1 3.6 139 147-304 89-233 (262)
211 KOG0989 consensus 97.8 0.00015 3.8E-09 51.8 8.1 208 135-380 31-244 (346)
212 KOG0737 consensus 97.8 2.5E-05 6.4E-10 57.3 3.9 177 162-372 126-311 (386)
213 PTZ00111 DNA replication licen 97.8 8.5E-05 2.2E-09 53.5 6.3 114 161-282 491-609 (916)
214 TIGR02880 cbbX_cfxQ CbbX prote 97.7 9E-05 2.3E-09 53.3 6.2 189 151-373 45-254 (284)
215 KOG0738 consensus 97.7 9E-05 2.3E-09 53.3 6.1 174 164-374 246-434 (491)
216 TIGR02030 BchI-ChlI magnesium 97.7 7.7E-05 2E-09 53.8 5.5 185 139-334 3-239 (340)
217 PRK12323 DNA polymerase III su 97.7 0.00024 6E-09 50.4 7.7 223 134-390 10-250 (721)
218 PRK07952 DNA replication prote 97.6 8.1E-05 2.1E-09 53.7 4.2 137 146-303 79-219 (242)
219 PRK08181 transposase; Validate 97.6 3.5E-05 9E-10 56.2 2.1 138 158-315 101-247 (269)
220 PRK06526 transposase; Provisio 97.6 6.3E-05 1.6E-09 54.5 3.2 111 157-287 92-204 (254)
221 KOG1969 consensus 97.5 0.0022 5.7E-08 43.5 11.1 179 165-373 328-519 (877)
222 KOG0736 consensus 97.5 7.9E-05 2E-09 53.7 3.3 120 162-299 704-839 (953)
223 PRK12377 putative replication 97.5 6.9E-05 1.8E-09 54.2 2.8 146 136-302 70-222 (248)
224 COG0470 HolB ATPase involved i 97.5 0.00025 6.5E-09 50.2 5.4 123 143-282 4-147 (325)
225 KOG0732 consensus 97.5 7.3E-05 1.9E-09 54.0 2.6 173 164-355 300-495 (1080)
226 PRK06835 DNA replication prote 97.5 0.00013 3.4E-09 52.1 3.9 143 143-304 157-307 (330)
227 COG1474 CDC6 Cdc6-related prot 97.4 0.00037 9.4E-09 49.0 5.9 202 165-385 44-261 (366)
228 TIGR02639 ClpA ATP-dependent C 97.4 0.0001 2.6E-09 52.9 3.0 122 134-284 202-349 (774)
229 KOG0739 consensus 97.4 0.00014 3.6E-09 52.0 3.2 123 164-316 167-305 (439)
230 KOG0729 consensus 97.4 0.00019 4.7E-09 51.1 3.6 213 132-384 169-413 (435)
231 pfam01695 IstB IstB-like ATP b 97.4 0.00025 6.5E-09 50.2 4.3 111 158-288 42-154 (178)
232 PRK09183 transposase/IS protei 97.3 0.00013 3.4E-09 52.2 2.7 109 157-287 95-208 (258)
233 pfam05673 DUF815 Protein of un 97.3 0.00019 4.8E-09 51.1 2.9 128 135-284 23-152 (248)
234 COG3267 ExeA Type II secretory 97.2 0.00079 2E-08 46.7 5.5 206 159-380 47-264 (269)
235 PRK05564 DNA polymerase III su 97.2 0.00043 1.1E-08 48.5 4.0 107 138-260 2-120 (313)
236 COG2812 DnaX DNA polymerase II 97.2 0.0015 3.8E-08 44.7 6.5 212 135-388 11-243 (515)
237 COG5271 MDN1 AAA ATPase contai 97.1 0.0012 3E-08 45.5 5.1 34 147-180 1157-1190(4600)
238 PRK09112 DNA polymerase III su 97.0 0.0019 4.8E-08 44.0 6.1 136 137-284 20-181 (352)
239 KOG0744 consensus 97.0 0.0011 2.8E-08 45.6 4.8 87 157-248 171-265 (423)
240 KOG0726 consensus 97.0 0.0019 4.8E-08 44.0 5.7 139 136-294 181-347 (440)
241 COG0542 clpA ATP-binding subun 97.0 0.00023 5.9E-09 50.5 0.7 125 135-284 165-309 (786)
242 KOG0742 consensus 96.9 0.006 1.5E-07 40.5 7.9 133 165-331 386-532 (630)
243 KOG0728 consensus 96.9 0.002 5.1E-08 43.9 5.5 168 162-370 180-366 (404)
244 KOG0740 consensus 96.9 0.00031 7.8E-09 49.6 1.0 132 165-330 188-336 (428)
245 KOG0477 consensus 96.9 0.0011 2.8E-08 45.7 3.8 113 162-283 481-598 (854)
246 PRK07471 DNA polymerase III su 96.8 0.003 7.7E-08 42.6 5.6 135 138-284 15-179 (363)
247 PRK06921 hypothetical protein; 96.8 0.0022 5.7E-08 43.5 4.9 118 161-302 114-239 (265)
248 KOG0730 consensus 96.8 0.0008 2E-08 46.7 2.5 125 162-316 217-357 (693)
249 TIGR01243 CDC48 AAA family ATP 96.8 0.0019 5E-08 43.9 4.4 126 162-317 239-381 (980)
250 TIGR01243 CDC48 AAA family ATP 96.8 0.00091 2.3E-08 46.2 2.6 129 150-296 564-704 (980)
251 pfam08298 AAA_PrkA PrkA AAA do 96.8 0.0012 3.1E-08 45.3 3.2 62 135-198 53-118 (358)
252 PTZ00112 origin recognition co 96.7 0.0021 5.3E-08 43.7 4.2 226 139-387 266-511 (650)
253 COG1484 DnaC DNA replication p 96.7 0.0022 5.5E-08 43.6 4.1 132 138-290 77-215 (254)
254 PRK05574 holA DNA polymerase I 96.6 0.074 1.9E-06 32.8 13.6 267 161-470 13-290 (336)
255 KOG0652 consensus 96.6 0.0051 1.3E-07 41.0 5.4 212 133-384 164-407 (424)
256 pfam05621 TniB Bacterial TniB 96.6 0.01 2.6E-07 38.8 6.7 220 140-384 34-284 (302)
257 KOG0741 consensus 96.5 0.0039 1E-07 41.8 4.5 23 164-186 257-279 (744)
258 COG2508 Regulator of polyketid 96.5 0.0098 2.5E-07 39.0 6.4 37 445-481 360-400 (421)
259 TIGR01815 TrpE-clade3 anthrani 96.5 0.0071 1.8E-07 40.0 5.7 104 8-116 522-629 (726)
260 PRK07940 DNA polymerase III su 96.5 0.0026 6.6E-08 43.0 3.4 120 137-260 2-147 (395)
261 PRK13566 anthranilate synthase 96.5 0.024 6.2E-07 36.2 8.3 34 53-86 260-295 (724)
262 PRK04132 replication factor C 96.4 0.0028 7.2E-08 42.8 3.2 109 137-258 22-135 (863)
263 PRK08939 primosomal protein Dn 96.3 0.0033 8.5E-08 42.3 3.2 124 147-290 139-268 (306)
264 TIGR02688 TIGR02688 conserved 96.3 0.0028 7.1E-08 42.8 2.8 168 161-361 215-404 (470)
265 KOG0482 consensus 96.2 0.015 3.7E-07 37.7 5.8 113 161-282 373-490 (721)
266 PRK07914 hypothetical protein; 96.2 0.13 3.3E-06 31.0 12.6 259 163-474 4-272 (320)
267 KOG0735 consensus 96.1 0.0054 1.4E-07 40.8 3.4 138 162-326 700-851 (952)
268 pfam03709 OKR_DC_1_N Orn/Lys/A 96.1 0.045 1.2E-06 34.3 7.9 66 23-91 6-74 (111)
269 smart00763 AAA_PrkA PrkA AAA d 96.1 0.0046 1.2E-07 41.3 2.7 61 140-200 51-119 (361)
270 cd03223 ABCD_peroxisomal_ALDP 96.1 0.029 7.5E-07 35.6 6.8 38 151-188 15-52 (166)
271 PRK05629 hypothetical protein; 96.0 0.15 3.8E-06 30.6 14.3 186 159-389 11-204 (331)
272 PRK07399 DNA polymerase III su 96.0 0.0076 1.9E-07 39.7 3.6 121 138-259 2-150 (314)
273 TIGR00764 lon_rel ATP-dependen 96.0 0.01 2.7E-07 38.7 4.2 142 225-373 227-390 (662)
274 PRK08058 DNA polymerase III su 95.9 0.0054 1.4E-07 40.8 2.7 118 139-260 4-137 (329)
275 KOG0651 consensus 95.9 0.016 4.1E-07 37.5 4.9 137 134-294 126-294 (388)
276 pfam06068 TIP49 TIP49 C-termin 95.8 0.0075 1.9E-07 39.8 2.9 98 233-353 275-377 (395)
277 COG5271 MDN1 AAA ATPase contai 95.8 0.021 5.3E-07 36.7 5.1 41 158-201 1538-1578(4600)
278 pfam05729 NACHT NACHT domain. 95.8 0.029 7.4E-07 35.6 5.8 83 165-247 2-93 (165)
279 TIGR00390 hslU heat shock prot 95.7 0.0071 1.8E-07 40.0 2.6 41 161-204 45-85 (463)
280 KOG1808 consensus 95.7 0.0099 2.5E-07 38.9 3.3 122 146-273 422-548 (1856)
281 PRK11131 ATP-dependent RNA hel 95.6 0.0087 2.2E-07 39.3 2.5 54 45-98 175-236 (1295)
282 PRK07132 DNA polymerase III su 95.5 0.025 6.3E-07 36.1 4.7 107 161-284 18-132 (303)
283 COG1224 TIP49 DNA helicase TIP 95.4 0.015 3.9E-07 37.6 3.2 286 45-359 55-399 (450)
284 COG2607 Predicted ATPase (AAA+ 95.2 0.049 1.3E-06 34.0 5.3 98 163-284 85-184 (287)
285 pfam00437 GSPII_E Type II/IV s 95.1 0.012 3.1E-07 38.3 1.9 60 138-197 114-173 (283)
286 PRK13409 putative ATPase RIL; 95.0 0.23 5.8E-06 29.3 8.2 65 25-90 192-270 (590)
287 PRK11477 carbohydrate diacid t 94.9 0.036 9.2E-07 34.9 4.1 32 444-475 327-358 (385)
288 cd01380 MYSc_type_V Myosin mot 94.9 0.022 5.7E-07 36.4 3.0 24 161-184 84-107 (691)
289 PRK01172 ski2-like helicase; P 94.9 0.026 6.5E-07 36.0 3.2 51 52-104 135-192 (674)
290 COG1220 HslU ATP-dependent pro 94.8 0.023 5.9E-07 36.3 2.8 123 233-370 250-405 (444)
291 PRK05707 DNA polymerase III su 94.8 0.13 3.3E-06 31.1 6.6 110 149-260 8-133 (328)
292 TIGR01842 type_I_sec_PrtD type 94.7 0.037 9.4E-07 34.9 3.7 78 151-231 344-429 (556)
293 PRK11331 5-methylcytosine-spec 94.7 0.25 6.4E-06 29.0 7.9 121 161-284 192-335 (459)
294 PRK05917 DNA polymerase III su 94.7 0.055 1.4E-06 33.6 4.4 112 145-260 2-122 (290)
295 KOG0481 consensus 94.6 0.094 2.4E-06 32.0 5.5 216 161-387 362-637 (729)
296 COG1493 HprK Serine kinase of 94.6 0.1 2.6E-06 31.7 5.7 103 62-186 65-168 (308)
297 cd01384 MYSc_type_XI Myosin mo 94.5 0.044 1.1E-06 34.4 3.7 68 161-230 86-158 (674)
298 pfam03215 Rad17 Rad17 cell cyc 94.4 0.35 8.8E-06 28.0 8.0 119 236-370 131-260 (490)
299 COG5022 Myosin heavy chain [Cy 94.4 0.045 1.2E-06 34.3 3.4 78 161-245 150-240 (1463)
300 TIGR00634 recN DNA repair prot 94.3 0.031 8E-07 35.4 2.5 34 167-200 26-60 (605)
301 COG1224 TIP49 DNA helicase TIP 94.3 0.12 2.9E-06 31.4 5.3 68 134-202 33-103 (450)
302 TIGR02525 plasmid_TraJ plasmid 94.3 0.027 6.9E-07 35.8 2.1 32 166-197 152-185 (374)
303 TIGR02782 TrbB_P P-type conjug 94.3 0.018 4.5E-07 37.2 1.1 51 135-185 111-161 (315)
304 cd01130 VirB11-like_ATPase Typ 94.2 0.02 5.2E-07 36.7 1.4 47 150-197 12-58 (186)
305 pfam02310 B12-binding B12 bind 94.2 0.46 1.2E-05 27.2 8.3 75 17-91 11-92 (121)
306 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.2 0.11 2.8E-06 31.5 5.1 100 151-260 14-116 (144)
307 COG1373 Predicted ATPase (AAA+ 94.2 0.086 2.2E-06 32.3 4.6 78 165-258 39-118 (398)
308 pfam03969 AFG1_ATPase AFG1-lik 94.2 0.13 3.2E-06 31.1 5.4 118 162-298 60-181 (361)
309 PRK06585 holA DNA polymerase I 94.2 0.51 1.3E-05 26.8 11.0 188 163-390 20-211 (343)
310 PRK08769 DNA polymerase III su 94.1 0.095 2.4E-06 32.0 4.6 109 145-260 5-140 (319)
311 KOG0991 consensus 94.0 0.046 1.2E-06 34.2 2.8 187 138-369 25-219 (333)
312 KOG1051 consensus 94.0 0.021 5.2E-07 36.7 1.0 108 137-247 183-294 (898)
313 COG1204 Superfamily II helicas 93.9 0.033 8.5E-07 35.2 2.0 105 11-118 78-216 (766)
314 PRK13633 cobalt transporter AT 93.9 0.5 1.3E-05 26.9 8.1 24 161-184 35-58 (281)
315 cd01385 MYSc_type_IX Myosin mo 93.9 0.077 2E-06 32.6 3.9 23 161-183 92-114 (692)
316 KOG0735 consensus 93.9 0.058 1.5E-06 33.5 3.2 78 161-246 429-507 (952)
317 TIGR02418 acolac_catab acetola 93.9 0.025 6.3E-07 36.1 1.3 276 28-351 30-347 (553)
318 TIGR02173 cyt_kin_arch cytidyl 93.9 0.04 1E-06 34.6 2.3 21 166-186 3-23 (173)
319 PRK06871 DNA polymerase III su 93.8 0.46 1.2E-05 27.2 7.7 96 161-260 21-133 (324)
320 TIGR01193 bacteriocin_ABC ABC- 93.7 0.04 1E-06 34.7 2.1 96 151-253 488-607 (710)
321 COG3910 Predicted ATPase [Gene 93.7 0.18 4.5E-06 30.1 5.4 37 145-185 22-59 (233)
322 cd01386 MYSc_type_XVIII Myosin 93.7 0.048 1.2E-06 34.1 2.4 24 161-184 84-107 (767)
323 PRK06762 hypothetical protein; 93.6 0.055 1.4E-06 33.7 2.6 43 165-215 4-46 (166)
324 COG4615 PvdE ABC-type sideroph 93.5 0.23 5.9E-06 29.3 5.7 44 164-208 350-393 (546)
325 pfam05707 Zot Zonular occluden 93.5 0.093 2.4E-06 32.1 3.6 78 166-245 3-82 (183)
326 PRK05637 anthranilate synthase 93.4 0.39 9.8E-06 27.7 6.7 77 10-87 1-80 (208)
327 cd02068 radical_SAM_B12_BD B12 93.4 0.65 1.7E-05 26.1 7.9 88 21-109 3-96 (127)
328 PRK07261 topology modulation p 93.3 0.079 2E-06 32.5 3.0 33 164-199 1-33 (171)
329 cd02024 NRK1 Nicotinamide ribo 93.2 0.38 9.8E-06 27.7 6.4 159 166-360 2-179 (187)
330 PTZ00014 myosin A; Provisional 93.1 0.091 2.3E-06 32.1 3.1 25 161-185 182-206 (821)
331 cd04158 ARD1 ARD1 subfamily. 93.0 0.61 1.6E-05 26.3 7.3 119 166-294 2-121 (169)
332 PRK06090 DNA polymerase III su 93.0 0.13 3.3E-06 31.1 3.8 122 147-284 6-148 (319)
333 PRK05657 RNA polymerase sigma 93.0 0.2 5E-06 29.8 4.7 49 434-482 265-327 (328)
334 PRK13833 conjugal transfer pro 92.9 0.035 8.8E-07 35.1 0.8 50 137-186 118-167 (323)
335 smart00242 MYSc Myosin. Large 92.9 0.14 3.5E-06 30.9 3.8 23 161-183 90-112 (677)
336 cd00267 ABC_ATPase ABC (ATP-bi 92.9 0.28 7.2E-06 28.6 5.4 107 153-260 15-126 (157)
337 smart00177 ARF ARF-like small 92.9 0.66 1.7E-05 26.1 7.2 120 161-294 11-135 (175)
338 COG0512 PabA Anthranilate/para 92.9 0.66 1.7E-05 26.1 7.2 79 10-89 1-84 (191)
339 cd01378 MYSc_type_I Myosin mot 92.9 0.14 3.4E-06 30.9 3.7 24 161-184 84-107 (674)
340 PRK08118 topology modulation p 92.8 0.093 2.4E-06 32.1 2.8 32 165-199 3-34 (167)
341 PRK13900 type IV secretion sys 92.8 0.045 1.2E-06 34.3 1.2 46 151-197 148-193 (332)
342 PRK02362 ski2-like helicase; P 92.8 0.092 2.4E-06 32.1 2.8 53 51-105 136-195 (736)
343 PRK05428 HPr kinase/phosphoryl 92.8 0.18 4.5E-06 30.1 4.2 102 70-196 71-175 (308)
344 COG4172 ABC-type uncharacteriz 92.7 0.34 8.7E-06 28.1 5.6 43 46-89 169-217 (534)
345 TIGR02982 heterocyst_DevA ABC 92.7 0.12 2.9E-06 31.4 3.2 85 140-234 8-92 (220)
346 KOG1970 consensus 92.6 0.32 8.1E-06 28.3 5.3 20 166-185 113-132 (634)
347 TIGR01420 pilT_fam twitching m 92.6 0.11 2.8E-06 31.6 2.9 163 163-366 127-312 (350)
348 PRK13413 mpi multiple promoter 92.6 0.29 7.3E-06 28.6 5.1 28 449-476 170-197 (200)
349 cd01377 MYSc_type_II Myosin mo 92.6 0.13 3.3E-06 31.1 3.3 23 161-183 89-111 (693)
350 KOG0741 consensus 92.5 0.084 2.1E-06 32.4 2.2 190 138-366 505-717 (744)
351 cd00878 Arf_Arl Arf (ADP-ribos 92.5 0.91 2.3E-05 25.0 7.6 117 166-292 2-119 (158)
352 cd01124 KaiC KaiC is a circadi 92.5 0.071 1.8E-06 32.9 1.8 30 165-195 1-31 (187)
353 TIGR03608 L_ocin_972_ABC putat 92.3 0.37 9.5E-06 27.8 5.4 32 152-183 13-44 (206)
354 TIGR01846 type_I_sec_HlyB type 92.3 0.13 3.3E-06 31.0 3.1 138 65-205 372-535 (703)
355 cd04151 Arl1 Arl1 subfamily. 92.3 0.96 2.5E-05 24.9 7.5 116 166-294 2-121 (158)
356 PRK09302 circadian clock prote 92.2 0.52 1.3E-05 26.8 6.0 28 161-188 264-292 (501)
357 PRK13851 type IV secretion sys 92.2 0.056 1.4E-06 33.6 1.0 45 152-197 151-195 (343)
358 PRK13894 conjugal transfer ATP 92.1 0.054 1.4E-06 33.7 0.9 50 137-186 123-172 (320)
359 KOG2680 consensus 92.0 0.59 1.5E-05 26.4 6.1 130 232-384 287-424 (454)
360 cd04155 Arl3 Arl3 subfamily. 91.9 1 2.7E-05 24.6 7.4 126 161-296 12-138 (173)
361 cd04153 Arl5_Arl8 Arl5/Arl8 su 91.9 1.1 2.7E-05 24.6 7.7 123 161-296 13-139 (174)
362 COG1342 Predicted DNA-binding 91.9 0.37 9.4E-06 27.8 4.9 39 433-474 34-72 (99)
363 cd00569 HTH_Hin_like Helix-tur 91.9 0.26 6.7E-06 28.8 4.2 28 445-472 15-42 (42)
364 PRK11288 araG L-arabinose tran 91.9 1.1 2.7E-05 24.6 9.5 160 19-186 114-302 (501)
365 KOG2035 consensus 91.8 0.73 1.9E-05 25.7 6.4 38 235-283 129-166 (351)
366 TIGR02538 type_IV_pilB type IV 91.7 0.081 2.1E-06 32.5 1.4 102 9-114 92-218 (577)
367 pfam02001 DUF134 Protein of un 91.7 0.39 1E-05 27.6 4.9 39 433-474 37-75 (100)
368 COG3835 CdaR Sugar diacid util 91.7 0.25 6.5E-06 29.0 3.9 31 445-475 319-349 (376)
369 cd01387 MYSc_type_XV Myosin mo 91.6 0.13 3.3E-06 31.1 2.4 65 161-230 85-154 (677)
370 pfam06745 KaiC KaiC. This fami 91.6 0.13 3.4E-06 31.0 2.4 36 161-196 17-55 (231)
371 PRK10419 nikE nickel transport 91.5 0.15 3.8E-06 30.6 2.6 35 151-185 26-60 (266)
372 pfam09862 DUF2089 Protein of u 91.4 0.47 1.2E-05 27.1 5.0 37 441-477 39-79 (113)
373 TIGR02769 nickel_nikE nickel i 91.3 0.15 3.8E-06 30.6 2.4 57 136-192 11-67 (267)
374 PRK13768 GTPase; Provisional 91.3 0.14 3.5E-06 30.8 2.2 34 165-198 4-37 (253)
375 KOG1942 consensus 91.2 0.41 1E-05 27.5 4.6 109 232-366 295-409 (456)
376 PRK00254 ski2-like helicase; P 91.2 0.29 7.5E-06 28.5 3.9 52 51-104 137-192 (717)
377 COG1124 DppF ABC-type dipeptid 91.2 0.13 3.3E-06 31.1 2.0 26 162-187 32-57 (252)
378 cd04156 ARLTS1 ARLTS1 subfamil 91.2 1.3 3.2E-05 24.1 7.5 112 166-290 2-118 (160)
379 KOG0479 consensus 91.1 0.86 2.2E-05 25.2 6.1 112 161-283 332-450 (818)
380 cd04150 Arf1_5_like Arf1-Arf5- 91.1 1.3 3.3E-05 24.0 7.3 119 165-296 2-124 (159)
381 PRK03839 putative kinase; Prov 91.0 0.17 4.3E-06 30.2 2.5 22 165-186 2-23 (180)
382 pfam07693 KAP_NTPase KAP famil 91.0 1.2 3E-05 24.3 6.8 70 236-315 163-239 (301)
383 cd01379 MYSc_type_III Myosin m 91.0 0.12 3.2E-06 31.2 1.8 24 161-184 84-107 (653)
384 COG4178 ABC-type uncharacteriz 91.0 0.27 6.9E-06 28.8 3.5 53 140-192 396-448 (604)
385 KOG2543 consensus 91.0 0.23 6E-06 29.2 3.2 92 162-257 29-138 (438)
386 cd02067 B12-binding B12 bindin 90.9 1.3 3.4E-05 23.9 10.3 89 22-111 15-111 (119)
387 PRK04328 hypothetical protein; 90.9 0.16 4.2E-06 30.3 2.3 45 162-207 23-68 (250)
388 cd03227 ABC_Class2 ABC-type Cl 90.9 0.4 1E-05 27.6 4.3 108 165-284 23-141 (162)
389 pfam06068 TIP49 TIP49 C-termin 90.8 0.18 4.6E-06 30.0 2.5 68 134-202 18-88 (395)
390 cd04160 Arfrp1 Arfrp1 subfamil 90.8 1.2 3.1E-05 24.2 6.7 20 165-184 1-20 (167)
391 PRK09361 radB DNA repair and r 90.8 0.18 4.7E-06 30.0 2.4 46 162-207 22-67 (224)
392 KOG0924 consensus 90.8 0.11 2.7E-06 31.6 1.2 44 149-192 357-401 (1042)
393 COG1123 ATPase components of v 90.7 0.15 3.9E-06 30.5 2.0 25 162-186 316-340 (539)
394 PRK11308 dppF dipeptide transp 90.7 0.19 4.9E-06 29.8 2.5 25 161-185 39-63 (327)
395 smart00344 HTH_ASNC helix_turn 90.5 0.49 1.3E-05 26.9 4.5 37 438-475 4-41 (108)
396 TIGR01194 cyc_pep_trnsptr cycl 90.5 0.34 8.8E-06 28.0 3.6 43 162-205 367-409 (555)
397 COG0467 RAD55 RecA-superfamily 90.4 0.22 5.6E-06 29.4 2.6 52 161-213 21-74 (260)
398 pfam00063 Myosin_head Myosin h 90.4 0.27 6.8E-06 28.8 3.0 24 161-184 83-106 (679)
399 TIGR02203 MsbA_lipidA lipid A 90.3 0.36 9.3E-06 27.9 3.7 34 150-183 375-408 (603)
400 cd04152 Arl4_Arl7 Arl4/Arl7 su 90.3 1.5 3.8E-05 23.6 7.6 117 164-294 4-130 (183)
401 PRK10869 recombination and rep 90.3 0.33 8.4E-06 28.2 3.4 34 166-199 25-59 (553)
402 TIGR02788 VirB11 P-type DNA tr 90.3 0.14 3.6E-06 30.8 1.5 47 150-197 145-191 (328)
403 COG1654 BirA Biotin operon rep 90.3 0.73 1.9E-05 25.7 5.2 30 453-482 21-53 (79)
404 KOG2170 consensus 90.3 0.26 6.7E-06 28.9 2.9 195 139-369 81-300 (344)
405 PRK04841 transcriptional regul 90.3 1.4 3.5E-05 23.8 6.6 24 449-472 851-874 (903)
406 COG0444 DppD ABC-type dipeptid 90.2 0.22 5.6E-06 29.4 2.5 28 161-188 29-56 (316)
407 pfam06322 Phage_NinH Phage Nin 90.2 0.36 9.2E-06 27.9 3.5 34 442-475 7-40 (64)
408 COG0563 Adk Adenylate kinase a 90.0 0.28 7.2E-06 28.7 2.9 30 165-199 2-31 (178)
409 KOG0736 consensus 90.0 0.24 6.1E-06 29.1 2.5 193 161-387 429-651 (953)
410 PRK13698 plasmid-partitioning 89.9 1.3 3.3E-05 23.9 6.2 25 449-473 174-198 (323)
411 PRK05541 adenylylsulfate kinas 89.9 0.22 5.7E-06 29.4 2.3 47 162-214 6-52 (176)
412 PTZ00133 ADP-ribosylation fact 89.8 1.6 4.1E-05 23.3 7.5 119 161-293 15-138 (182)
413 cd01381 MYSc_type_VII Myosin m 89.7 0.28 7.1E-06 28.7 2.7 24 161-184 84-107 (671)
414 cd04149 Arf6 Arf6 subfamily. 89.7 1.6 4.2E-05 23.2 7.7 121 161-295 7-132 (168)
415 cd01383 MYSc_type_VIII Myosin 89.7 0.29 7.3E-06 28.6 2.7 64 161-231 90-158 (677)
416 KOG3347 consensus 89.7 0.2 5.1E-06 29.7 1.9 38 162-204 6-43 (176)
417 COG4608 AppF ABC-type oligopep 89.7 0.27 6.8E-06 28.8 2.5 100 161-261 37-156 (268)
418 PRK10938 putative molybdenum t 89.6 1.7 4.3E-05 23.2 8.5 25 161-185 284-308 (490)
419 cd01382 MYSc_type_VI Myosin mo 89.5 0.29 7.5E-06 28.5 2.7 25 161-185 89-113 (717)
420 TIGR01978 sufC FeS assembly AT 89.5 0.4 1E-05 27.6 3.3 29 163-197 26-54 (248)
421 pfam01057 Parvo_NS1 Parvovirus 89.5 1.7 4.4E-05 23.1 8.2 121 158-316 108-231 (271)
422 PRK09522 bifunctional anthrani 89.5 1.7 4.4E-05 23.1 7.7 77 10-87 1-84 (531)
423 PRK04217 hypothetical protein; 89.4 0.84 2.1E-05 25.3 4.9 39 433-474 43-81 (110)
424 pfam02796 HTH_7 Helix-turn-hel 89.4 0.48 1.2E-05 27.0 3.6 30 445-474 15-44 (45)
425 pfam00025 Arf ADP-ribosylation 89.3 1.8 4.5E-05 23.0 7.3 117 163-294 14-136 (174)
426 PRK03846 adenylylsulfate kinas 89.3 0.24 6.2E-06 29.1 2.1 42 157-198 18-59 (198)
427 PRK11022 dppD dipeptide transp 89.2 0.31 7.9E-06 28.4 2.6 26 161-186 31-56 (327)
428 PRK05703 flhF flagellar biosyn 89.1 0.4 1E-05 27.6 3.1 36 163-199 210-250 (412)
429 PRK07993 DNA polymerase III su 89.1 1.4 3.5E-05 23.8 5.9 98 161-260 22-135 (334)
430 PRK06761 hypothetical protein; 89.1 1.6 4.1E-05 23.3 6.2 83 276-368 88-173 (281)
431 TIGR01764 excise DNA binding d 89.1 0.35 8.8E-06 28.0 2.8 26 454-479 4-29 (49)
432 PRK06067 flagellar accessory p 89.1 0.28 7.1E-06 28.7 2.3 36 161-197 30-66 (241)
433 PRK10875 recD exonuclease V su 89.1 0.2 5.2E-06 29.6 1.6 53 233-299 260-312 (607)
434 pfam00931 NB-ARC NB-ARC domain 89.0 0.26 6.6E-06 28.9 2.1 39 149-187 5-43 (285)
435 cd03241 ABC_RecN RecN ATPase i 89.0 0.39 1E-05 27.6 3.0 34 166-199 24-58 (276)
436 cd00124 MYSc Myosin motor doma 89.0 0.36 9.2E-06 27.9 2.8 65 161-230 84-153 (679)
437 TIGR01967 DEAH_box_HrpA ATP-de 89.0 0.03 7.8E-07 35.5 -2.7 124 233-373 471-622 (1320)
438 TIGR02533 type_II_gspE general 89.0 0.19 4.7E-06 29.9 1.3 223 11-257 23-341 (495)
439 PRK06217 hypothetical protein; 89.0 0.38 9.7E-06 27.7 2.9 32 164-198 2-33 (185)
440 pfam01583 APS_kinase Adenylyls 88.9 0.29 7.3E-06 28.6 2.3 35 165-199 4-38 (157)
441 KOG0990 consensus 88.9 1.1 2.7E-05 24.6 5.1 122 138-282 39-169 (360)
442 cd01131 PilT Pilus retraction 88.9 0.43 1.1E-05 27.3 3.1 32 166-197 4-36 (198)
443 PRK13764 ATPase; Provisional 88.9 0.22 5.6E-06 29.4 1.6 36 155-190 251-286 (605)
444 COG4170 SapD ABC-type antimicr 88.8 0.26 6.6E-06 28.9 2.0 22 167-188 37-58 (330)
445 KOG0161 consensus 88.7 0.24 6.1E-06 29.1 1.7 215 5-245 25-259 (1930)
446 cd02023 UMPK Uridine monophosp 88.6 0.45 1.2E-05 27.2 3.1 22 166-187 2-23 (198)
447 COG1123 ATPase components of v 88.6 0.28 7.1E-06 28.7 2.0 43 46-89 166-214 (539)
448 cd03258 ABC_MetN_methionine_tr 88.6 0.35 8.8E-06 28.0 2.5 33 152-184 20-52 (233)
449 PRK10261 glutathione transport 88.6 0.36 9.3E-06 27.9 2.6 24 163-186 350-373 (623)
450 COG1136 SalX ABC-type antimicr 88.6 1.2 3E-05 24.3 5.2 32 152-183 20-51 (226)
451 cd02070 corrinoid_protein_B12- 88.5 2 5.1E-05 22.7 11.5 98 10-110 82-192 (201)
452 KOG2227 consensus 88.5 0.19 4.8E-06 29.9 1.1 205 140-371 150-378 (529)
453 cd01120 RecA-like_NTPases RecA 88.5 0.33 8.5E-06 28.1 2.4 33 166-198 2-34 (165)
454 cd03294 ABC_Pro_Gly_Bertaine T 88.4 0.38 9.6E-06 27.8 2.6 24 161-184 48-71 (269)
455 TIGR00455 apsK adenylylsulfate 88.4 0.31 7.8E-06 28.4 2.1 30 161-190 17-46 (187)
456 COG1466 HolA DNA polymerase II 88.4 2 5.2E-05 22.6 7.3 145 306-465 134-279 (334)
457 PRK00889 adenylylsulfate kinas 88.4 0.33 8.3E-06 28.2 2.2 36 163-198 4-39 (175)
458 cd04157 Arl6 Arl6 subfamily. 88.4 2 5.2E-05 22.6 7.4 119 165-294 1-125 (162)
459 PRK10982 galactose/methyl gala 88.3 2 5.2E-05 22.6 10.6 162 20-188 109-299 (491)
460 KOG1942 consensus 88.3 0.42 1.1E-05 27.4 2.8 63 136-199 34-99 (456)
461 KOG1802 consensus 88.3 0.23 5.9E-06 29.3 1.4 60 146-211 413-474 (935)
462 pfam05049 IIGP Interferon-indu 88.2 0.29 7.4E-06 28.6 1.9 43 148-190 20-62 (375)
463 cd02069 methionine_synthase_B1 88.2 2.1 5.3E-05 22.5 9.3 87 21-107 103-199 (213)
464 PRK09473 oppD oligopeptide tra 88.2 0.39 1E-05 27.6 2.6 26 161-186 40-65 (330)
465 TIGR03269 met_CoM_red_A2 methy 88.2 2.1 5.3E-05 22.5 8.7 27 162-188 309-335 (520)
466 PRK06696 uridine kinase; Valid 88.2 0.26 6.7E-06 28.9 1.7 57 145-201 7-64 (227)
467 PRK05480 uridine kinase; Provi 88.2 0.51 1.3E-05 26.8 3.1 23 165-187 8-30 (209)
468 pfam09848 DUF2075 Uncharacteri 88.1 0.38 9.7E-06 27.7 2.4 80 165-246 3-92 (348)
469 PRK11174 cysteine/glutathione 88.1 0.7 1.8E-05 25.8 3.8 43 146-188 359-401 (588)
470 pfam05225 HTH_psq helix-turn-h 88.1 0.74 1.9E-05 25.7 3.9 32 443-474 5-39 (45)
471 TIGR02142 modC_ABC molybdate A 88.1 0.64 1.6E-05 26.2 3.6 179 166-388 26-222 (361)
472 COG3311 AlpA Predicted transcr 88.0 0.4 1E-05 27.6 2.5 23 453-475 15-37 (70)
473 KOG3928 consensus 88.0 0.42 1.1E-05 27.4 2.6 34 163-199 179-213 (461)
474 COG0572 Udk Uridine kinase [Nu 88.0 0.44 1.1E-05 27.3 2.7 24 165-188 10-33 (218)
475 cd01844 SGNH_hydrolase_like_6 87.9 2.2 5.5E-05 22.4 6.7 58 32-89 29-102 (177)
476 cd01918 HprK_C HprK/P, the bif 87.9 0.49 1.3E-05 26.9 2.9 65 161-237 12-76 (149)
477 pfam00485 PRK Phosphoribulokin 87.9 0.49 1.2E-05 27.0 2.9 22 166-187 2-23 (196)
478 cd02027 APSK Adenosine 5'-phos 87.8 0.37 9.4E-06 27.8 2.2 41 166-211 2-42 (149)
479 cd02021 GntK Gluconate kinase 87.8 0.46 1.2E-05 27.2 2.7 28 166-196 2-29 (150)
480 PRK00131 aroK shikimate kinase 87.8 0.52 1.3E-05 26.8 3.0 33 163-198 4-36 (175)
481 PRK13642 cbiO cobalt transport 87.7 0.45 1.1E-05 27.2 2.6 27 161-187 31-57 (277)
482 pfam01527 Transposase_8 Transp 87.7 1.6 4.1E-05 23.3 5.4 38 437-475 10-47 (75)
483 PRK13650 cbiO cobalt transport 87.7 0.45 1.2E-05 27.2 2.6 26 161-186 28-53 (276)
484 PRK13635 cbiO cobalt transport 87.7 0.45 1.1E-05 27.2 2.6 33 154-186 24-56 (279)
485 TIGR02770 nickel_nikD nickel i 87.6 0.35 8.9E-06 28.0 2.0 20 165-184 14-33 (239)
486 COG2274 SunT ABC-type bacterio 87.5 0.53 1.3E-05 26.7 2.9 38 151-188 487-524 (709)
487 PRK10418 nikD nickel transport 87.5 0.58 1.5E-05 26.4 3.1 35 152-186 18-52 (254)
488 TIGR02653 Lon_rel_chp conserve 87.4 0.29 7.3E-06 28.6 1.5 141 153-313 205-364 (677)
489 PRK07649 para-aminobenzoate/an 87.4 2.2 5.5E-05 22.4 5.9 74 13-87 2-79 (195)
490 pfam00910 RNA_helicase RNA hel 87.3 0.38 9.6E-06 27.7 2.0 93 166-282 1-104 (105)
491 COG1936 Predicted nucleotide k 87.3 0.44 1.1E-05 27.3 2.4 20 165-184 2-21 (180)
492 COG1875 NYN ribonuclease and A 87.3 1.3 3.4E-05 23.9 4.8 44 68-111 107-150 (436)
493 cd03253 ABCC_ATM1_transporter 87.3 0.59 1.5E-05 26.4 3.0 33 152-184 16-48 (236)
494 pfam00126 HTH_1 Bacterial regu 87.2 0.69 1.7E-05 25.9 3.3 31 446-477 9-39 (60)
495 TIGR03499 FlhF flagellar biosy 87.2 0.66 1.7E-05 26.0 3.2 35 165-199 196-234 (282)
496 cd02028 UMPK_like Uridine mono 87.1 0.48 1.2E-05 27.0 2.5 21 166-186 2-22 (179)
497 TIGR02868 CydC ABC transporter 87.1 0.55 1.4E-05 26.6 2.8 39 150-188 374-412 (566)
498 COG1522 Lrp Transcriptional re 87.1 1.4 3.5E-05 23.8 4.8 11 356-366 115-125 (154)
499 TIGR00954 3a01203 Peroxysomal 87.1 0.54 1.4E-05 26.7 2.7 25 159-183 552-576 (788)
500 PRK13648 cbiO cobalt transport 87.1 0.49 1.3E-05 26.9 2.5 18 166-183 38-55 (269)
No 1
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=100.00 E-value=0 Score=955.07 Aligned_cols=452 Identities=29% Similarity=0.443 Sum_probs=410.9
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 352883899869989999999999988988999893--799998608998999978546988899999999857898399
Q gi|254780916|r 7 LDRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPII 84 (482)
Q Consensus 7 m~~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvI 84 (482)
|....+|||||||+.+|..++..|+..||+|.++.+ ++++.+.+..+|+|++|++||++||+++++++++.+|++|||
T Consensus 1 ~~~~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI 80 (464)
T COG2204 1 MMMMARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVI 80 (464)
T ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
T ss_conf 98768789992978999999999997697489858999999998628999899816789996699999999638999889
Q ss_pred EEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9926899999998885057432222222222222222222222222222-----21111111122222222222222223
Q gi|254780916|r 85 VQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVVPSQE-----NEHCALDSLIAVSPAMIQVVDLARKA 159 (482)
Q Consensus 85 iiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~~~~~-----~~~~~~~~LiG~S~~m~~v~~~i~~~ 159 (482)
+||||+++++++.|++.||+||+.|||++++|...+.++++......+. ........++|+||+|+++++++.++
T Consensus 81 ~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~am~~l~~~i~kv 160 (464)
T COG2204 81 VMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGESPAMQQLRRLIAKV 160 (464)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98288999999999855703332189999999999999998765322210000013455677520699999999999998
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC-CCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 443204887327774367999999842675433210123465542100243311255-5532211100123446671475
Q gi|254780916|r 160 GDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVD-LQTKNSAQFLGKFIEANGGTIV 238 (482)
Q Consensus 160 a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~-~~~~~~~~~~g~~~~a~~Gtl~ 238 (482)
|.++.||||+||+|||||++||+||+.|.|+++|||.|||+++|++++|||||||++ +||||..++.|+||+|+|||||
T Consensus 161 A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLf 240 (464)
T COG2204 161 APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQANGGTLF 240 (464)
T ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCEEE
T ss_conf 47799789977898758999999986074458992563346489888777761456567677643457615773796587
Q ss_pred ECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 16642001889998888776420011235532123431565214332111111233379998865433446778774422
Q gi|254780916|r 239 LEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSED 318 (482)
Q Consensus 239 l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eD 318 (482)
||||++||+++|.||||+||+++|+|+||++++++||||||+||+||++++++|+||+||||||||++|++||||||+||
T Consensus 241 LDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~ED 320 (464)
T COG2204 241 LDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKED 320 (464)
T ss_pred EECCCCCCHHHHHHHHHHHHCCEEEECCCCCEECEEEEEEEECCCCHHHHHHCCCCHHHHHHHHCCCEECCCCCCCCCHH
T ss_conf 32311099999999999987070673588860000169996057789999881973788886523311048762236200
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 22556677764101122333321111100012233898689999999999874389810688954542124454322343
Q gi|254780916|r 319 IPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHT 398 (482)
Q Consensus 319 I~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~~~~~~~~~~ 398 (482)
||+|++||++++|.++|+++++|+++|++.|+.|+||||||||+|+++|+++++.+..|..++++..... ..
T Consensus 321 Ip~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~~~~~i~~~~l~~~~~~---~~----- 392 (464)
T COG2204 321 IPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILSEGPEIEVEDLPLEILA---PA----- 392 (464)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCC---CC-----
T ss_conf 7999999999999980999888799999999738998189999999999985178654665441420035---42-----
Q ss_pred CCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 22222233444321000000001123444543258999999999999999828727899978489988999999981888
Q gi|254780916|r 399 ETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREYNIE 478 (482)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~~gi~ 478 (482)
.... .... ... +... ....+.++++|+++|.++|++|+||+++||+.|||+|+|||+|||+||++
T Consensus 393 ----~~~~-----~~~~---~~~--~~~~-~~l~~~~~~~Er~~I~~aL~~~~g~~~~aA~~LGi~R~tLy~Klk~~g~~ 457 (464)
T COG2204 393 ----AEAL-----AGPA---GEA--ALPG-LPLGEALAEVERQLILQALERTGGNKSEAAERLGISRKTLYRKLKEYGID 457 (464)
T ss_pred ----CCCC-----CCCC---CCC--CCCC-CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf ----2233-----4445---655--4555-42788999999999999999968989999999799888999999994898
Q ss_pred CCC
Q ss_conf 144
Q gi|254780916|r 479 VDS 481 (482)
Q Consensus 479 ~d~ 481 (482)
...
T Consensus 458 ~~~ 460 (464)
T COG2204 458 RSD 460 (464)
T ss_pred CCC
T ss_conf 344
No 2
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=100.00 E-value=0 Score=954.32 Aligned_cols=458 Identities=25% Similarity=0.390 Sum_probs=413.7
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 8998699899999999999889889998937--99998608-99899997854698889999999985789839999268
Q gi|254780916|r 13 VLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKI-QVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQTTQ 89 (482)
Q Consensus 13 ILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~-~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT~~ 89 (482)
|||||||.++|.+|...|...||.|.+.+++ .+..+.+. .||+|++|+.|||+||+++|.+|++.+|.+||||||||
T Consensus 1 vwvvDDD~siR~VL~~AL~~~g~~v~~f~~A~~~l~~l~~~p~pD~~~tD~rMPg~~Gl~LL~~ik~~~P~LPVIvM~A~ 80 (471)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGIEVRTFDNAASVLRALAREPQPDLLITDVRMPGEDGLDLLKQIKKRHPKLPVIVMTAH 80 (471)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 95776471899999999966695453113189999998447999879861226882489999999850899977987130
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 99999998885057432222222222222222222222222222----21111111122222222222222223443204
Q gi|254780916|r 90 DNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVVPSQE----NEHCALDSLIAVSPAMIQVVDLARKAGDCAIP 165 (482)
Q Consensus 90 ~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~~~~~----~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~ 165 (482)
++..+++.+...||++||+||||.++.+..+.+|+.....+... ........|||+||+||+||+.|.|++.|+.+
T Consensus 81 ~dl~~Av~a~~~GAfEYLpKPFD~de~v~lv~RA~~~~~~~~~~~~~~~~~~~~~~liG~aPAMQevfR~igRL~~~~l~ 160 (471)
T TIGR01818 81 SDLDSAVAAYQRGAFEYLPKPFDLDEAVTLVERALAHAQEQVALELDAGEAEDSAELIGEAPAMQEVFRAIGRLSRSDLS 160 (471)
T ss_pred HHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE
T ss_conf 67899999973583021769876688999999861030012220001210125621236885168999999975169605
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC-CCCCCCCCCCCCCCCCCCCEEEECCCCH
Q ss_conf 887327774367999999842675433210123465542100243311255-5532211100123446671475166420
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVD-LQTKNSAQFLGKFIEANGGTIVLEEPDA 244 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~-~~~~~~~~~~g~~~~a~~Gtl~l~ei~~ 244 (482)
|||.||+|||||++|+++|.+|+|+++|||.+|+|+||.+|+|||||||++ +||||...+.|.||||+|||||||||+|
T Consensus 161 VlI~GESGTGKELVA~ALH~~s~R~~~PFiAlNmAAIP~~L~ESELFGHEkGAFTGA~~~~~GRFEQA~GGTLFLDEIGD 240 (471)
T TIGR01818 161 VLINGESGTGKELVARALHRHSPRARGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGD 240 (471)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCEECCCCCC
T ss_conf 88855757758999998401375557773273023222466554321456530001025567772534888210102167
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01889998888776420011235532123431565214332111111233379998865433446778774422225566
Q gi|254780916|r 245 LPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVH 324 (482)
Q Consensus 245 L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~ 324 (482)
||.+.|+||||+|++|+|++|||+.++++|||||||||+||+.+|.+|.||+||||||||++|+|||||||+||||.|++
T Consensus 241 MPl~~QTRLLRVL~~G~f~rVGG~~p~k~DVRi~AAThq~Le~lv~~G~FReDLfhRL~Vi~i~lPpLrER~eDi~~L~r 320 (471)
T TIGR01818 241 MPLDLQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQDLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLAR 320 (471)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCEEEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHCEEEECCCCCCCHHHHHHHHHH
T ss_conf 87768777988640786577268202455046673366568999655881355555123346216872122668999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 77764101122333321111100012233898689999999999874389810688954542124454322343222222
Q gi|254780916|r 325 FFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTC 404 (482)
Q Consensus 325 ~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~ 404 (482)
|||...+++.+.+.+.+++++++.|.+|+||||||||+|+|+|+.+++++.+|...+++..+..............
T Consensus 321 hFL~~a~~~l~~~~k~L~~~~~~~L~~~~WPGNVR~LEN~cR~l~~la~~~~v~~~d~~~eLA~~~~~~~~~~~~~---- 396 (471)
T TIGR01818 321 HFLALAAKELDVEPKLLSPEALEALKRYDWPGNVRELENVCRRLTVLASGDEVLVSDLPAELALSERKASAPDSDA---- 396 (471)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCHHCCHHCC----
T ss_conf 9999988742865113488999999725889852457789999987346764677775765567763101000102----
Q ss_pred CCCCCCCCCHHHCCCCCCC-----CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 3344432100000000112-----3444543258999999999999999828727899978489988999999981
Q gi|254780916|r 405 YTEGKSSDTILDNLSQESI-----PAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREY 475 (482)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~~ 475 (482)
.....+...+.......+ ..+....+...+.++||.+|+.||++|+|++.+||+.||++||||.||||++
T Consensus 397 -~~~~~w~~~l~~~~~~~~~~~~~G~P~~~L~~~~~~~~er~Ll~~AL~~T~G~~~~AA~~LG~gRNTLtrKl~~L 471 (471)
T TIGR01818 397 -VQQDDWEEALEAWAKQALSSGKDGVPEQGLLDEALPELERTLLEAALQHTRGRKQEAAKLLGLGRNTLTRKLKEL 471 (471)
T ss_pred -CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHCCCC
T ss_conf -203469999999999986214567881668999999873999999997345506899986188410342220359
No 3
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=100.00 E-value=0 Score=921.06 Aligned_cols=447 Identities=26% Similarity=0.414 Sum_probs=409.8
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 3528838998699899999999999889889998937--99998608998999978546988899999999857898399
Q gi|254780916|r 7 LDRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPII 84 (482)
Q Consensus 7 m~~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvI 84 (482)
|+..+||||||||+.++..++.+|+..||+|.+|+++ |++.+.+.+||+|++|++||+|||+++++++++..|++|||
T Consensus 1 M~~~~rILIVDDd~~ir~~l~~~L~~~G~~V~~a~~~~~Al~~l~~~~~DlvllDi~mP~~~Glell~~ir~~~p~~pvI 80 (457)
T PRK11361 1 MTAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKALKEMRSHETRTPVI 80 (457)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEE
T ss_conf 99999289983999999999999997799899989999999998668989999828799999999999998209899389
Q ss_pred EEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99268999999988850574322222222222222222222222222-------22211111111222222222222222
Q gi|254780916|r 85 VQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVVPS-------QENEHCALDSLIAVSPAMIQVVDLAR 157 (482)
Q Consensus 85 iiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~~~-------~~~~~~~~~~LiG~S~~m~~v~~~i~ 157 (482)
|+|||++++.+++|++.||+||+.|||+.++|..++.+|++...... +......+..++|+|++|+++++++.
T Consensus 81 vlTa~~~~~~av~A~k~GA~Dyl~KPf~~~~L~~~v~rAl~~~~l~~~~~~l~~~~~~~~~~~~lig~S~~m~~v~~~i~ 160 (457)
T PRK11361 81 LMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQSMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTA 160 (457)
T ss_pred EEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHH
T ss_conf 99689998999999975966325699999999999999999988777776665432012456774546999999999999
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC-CCCCCCCCCCCCCCCCCCCE
Q ss_conf 23443204887327774367999999842675433210123465542100243311255-55322111001234466714
Q gi|254780916|r 158 KAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVD-LQTKNSAQFLGKFIEANGGT 236 (482)
Q Consensus 158 ~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~-~~~~~~~~~~g~~~~a~~Gt 236 (482)
++|.++.||||+||+||||+++||+||..|.|+++|||.|||+++|++++|++||||++ +|||+...+.|+|++|+|||
T Consensus 161 ~~A~s~~~VLI~GEsGTGKe~~Ar~IH~~S~r~~~pFv~vnc~ai~~~l~eseLFG~~kgaftga~~~~~G~~e~A~gGT 240 (457)
T PRK11361 161 KIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGT 240 (457)
T ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCC
T ss_conf 98488995899889985789999999983798899838764787985778999718766787885314698613359982
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 75166420018899988887764200112355321234315652143321111112333799988654334467787744
Q gi|254780916|r 237 IVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRS 316 (482)
Q Consensus 237 l~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~ 316 (482)
||||||++||+..|.|||++|++++|+|+|+++++++|+||||+|++||.+++++|.||+|||||||+++|++||||||+
T Consensus 241 LfLdeI~~l~~~~Q~kLLr~L~~~~~~~~g~~~~~~~dvRiIaaT~~~L~~~v~~g~Fr~DLyyrL~~~~i~lPpLReR~ 320 (457)
T PRK11361 241 LLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRR 320 (457)
T ss_pred EECCCHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEECCCCCHHHHHHCCCCHHHHHHHHCEEEEECCCHHHCH
T ss_conf 63146645239999999999864927856997136653489965787859998758323889953022125173854587
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 22225566777641011223333211111000122338986899999999998743898106889545421244543223
Q gi|254780916|r 317 EDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREF 396 (482)
Q Consensus 317 eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~~~~~~~~ 396 (482)
||||.|++||+.+++.+++++.++||++|++.|++|+||||||||+|+|+|+++++.+..|+.++++..+..........
T Consensus 321 eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvREL~n~ierav~~~~~~~i~~~~l~~~~~~~~~~~~~~ 400 (457)
T PRK11361 321 EDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEA 400 (457)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHCCCCCCCCC
T ss_conf 54999999999999997499989889999999956999979999999999999828998156676848661555677645
Q ss_pred CCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 43222222334443210000000011234445432589999999999999998287278999784899889999999818
Q gi|254780916|r 397 HTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREYN 476 (482)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~~g 476 (482)
. . ...........++++|+.+|.++|++|+||+++||+.|||||+|||||||+||
T Consensus 401 ~---------------~----------~~~~~~~l~~~~~~~Er~~i~~aL~~~~gn~~~aA~~LGisR~tLyrKlkk~g 455 (457)
T PRK11361 401 K---------------T----------APVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQEYG 455 (457)
T ss_pred C---------------C----------CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 5---------------6----------77666789999999999999999998299899999998989999999999858
Q ss_pred CC
Q ss_conf 88
Q gi|254780916|r 477 IE 478 (482)
Q Consensus 477 i~ 478 (482)
|+
T Consensus 456 id 457 (457)
T PRK11361 456 ID 457 (457)
T ss_pred CC
T ss_conf 29
No 4
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=100.00 E-value=0 Score=916.84 Aligned_cols=434 Identities=28% Similarity=0.388 Sum_probs=397.5
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECC--HHHHHHHCCCCCEEEEECCCCCC-----CHHHHHHHHHHHCCCCCEEE
Q ss_conf 899869989999999999988988999893--79999860899899997854698-----88999999998578983999
Q gi|254780916|r 13 VLIIDKDDEQIKIIKDHVESYGYDVFIVNV--SDLSTISKIQVNVIFLSLINCED-----DKENILKNIVDKIPIVPIIV 85 (482)
Q Consensus 13 ILIVDDd~~~~~~l~~~L~~~G~~v~~a~~--~al~~l~~~~~dlillD~~mP~~-----dGlell~~i~~~~p~ipvIi 85 (482)
+||||||+.+...|+.-|... |++..|++ +|++.+++++|.||.||+-+|.. .|+..|++|-+..|++.|||
T Consensus 1 LLiVeDD~glQKQLkWs~G~~-Ye~~~A~DR~sAiA~vRRheP~VVTLDLGLPPd~d~a~EGl~~L~qIL~~~P~TKVIV 79 (451)
T TIGR02915 1 LLIVEDDLGLQKQLKWSFGAD-YEVAVAADRESAIALVRRHEPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKVIV 79 (451)
T ss_pred CCEEECCHHHHHHHHHHCCCC-CEEEEECCHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 924536866567876415788-4035534757899986056996477367557898874589999999996389804899
Q ss_pred EECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCC---CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 926899999998885057432222222222222222222222222222-----211---111111222222222222222
Q gi|254780916|r 86 QTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVVPSQE-----NEH---CALDSLIAVSPAMIQVVDLAR 157 (482)
Q Consensus 86 iT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~~~~~-----~~~---~~~~~LiG~S~~m~~v~~~i~ 157 (482)
+||+++-+.+++|+.+|||||+.||++++.|.-.|.+|.+-..++.+. ..+ ..+.++||+||.|++++..|+
T Consensus 80 iTGN~~r~NAlkAi~lGAYDFyqKP~d~d~L~liv~RAf~L~~Le~ENRrL~~~~~~Gst~~~Gli~~~~~m~kic~tIe 159 (451)
T TIGR02915 80 ITGNDDRENALKAIGLGAYDFYQKPIDPDVLKLIVDRAFRLYTLETENRRLQSALGGGSTALEGLITSSPGMQKICRTIE 159 (451)
T ss_pred EECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHH
T ss_conf 86689838899996437510135787578999999998888888887699874068874103652206850678988865
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC-CCCCCCCCCCCCCCCCCCCE
Q ss_conf 23443204887327774367999999842675433210123465542100243311255-55322111001234466714
Q gi|254780916|r 158 KAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVD-LQTKNSAQFLGKFIEANGGT 236 (482)
Q Consensus 158 ~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~-~~~~~~~~~~g~~~~a~~Gt 236 (482)
|+|.|+.+|||.||||||||.+||+||+.|.|+++|||.||||+||++|+|||||||+| +||||..+..|++|-|++||
T Consensus 160 kvA~sd~TvllLGESGTGKEV~ArA~H~~S~R~~~~FVAINCAAIPEnLLEsELFGyEKGAFTGA~k~T~GKIE~A~~GT 239 (451)
T TIGR02915 160 KVAPSDITVLLLGESGTGKEVLARALHELSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGT 239 (451)
T ss_pred HHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHCCCCCCEEEECCCC
T ss_conf 21200001301046671178999898420578977734441674575246677603410124220034776167506883
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 75166420018899988887764200112355321234315652143321111112333799988654334467787744
Q gi|254780916|r 237 IVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRS 316 (482)
Q Consensus 237 l~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~ 316 (482)
||||||++||+.+|+||||||||+-++|+||-+.+++|||||||||+||+.++++|.|||||||||+.++|+|||||||.
T Consensus 240 LFLDEIGDLP~~LQAKLLRFLQErVIER~GGR~eIPVDVRvvCATnqdL~~~i~eg~FREDLfYRl~Eisi~iPPLR~R~ 319 (451)
T TIGR02915 240 LFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRVVCATNQDLKKMIAEGTFREDLFYRLAEISITIPPLRDRD 319 (451)
T ss_pred CCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCH
T ss_conf 01111220676689999987546663105887245614267503224689998548972000134666786258899860
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 22225566777641011223333211111000122338986899999999998743898106889545421244543223
Q gi|254780916|r 317 EDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREF 396 (482)
Q Consensus 317 eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~~~~~~~~ 396 (482)
+|..+|+++|+++|+.++++..++||++|+..|..|.||||||||+|.|+|||+|+.++.|+.+|+-..-.+....
T Consensus 320 gDa~lLA~~Fl~rf~~~~k~~~~~F~~DA~~ale~h~WPGNvRELEN~vKRAVIMa~g~qIt~~DLGl~~~Pi~~~---- 395 (451)
T TIGR02915 320 GDAVLLANAFLERFARELKRKAKGFTDDALRALEAHKWPGNVRELENKVKRAVIMAEGNQITAEDLGLDAKPIERA---- 395 (451)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHCHHHEEEEECCCCCCCHHHCCCCCCCCCCC----
T ss_conf 1899999999998878733021660699999976069988415440300213453378713565488886777754----
Q ss_pred CCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 4322222233444321000000001123444543258999-999999999999828727899978489988999999981
Q gi|254780916|r 397 HTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLS-DIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREY 475 (482)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~~ 475 (482)
.+ ......++.++ +.|++.+.+|+.+++||+++||++|||+|-|||--|+||
T Consensus 396 ---------------~~------------~l~~~~LR~vRe~aEr~av~~A~a~~~GN~arAaElLGitRPTLYdLm~k~ 448 (451)
T TIGR02915 396 ---------------ET------------PLEGLNLREVREKAEREAVRKAIARVDGNIARAAELLGITRPTLYDLMKKY 448 (451)
T ss_pred ---------------CH------------HHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf ---------------01------------111451889999999999999998726618889887258203599999972
Q ss_pred CCC
Q ss_conf 888
Q gi|254780916|r 476 NIE 478 (482)
Q Consensus 476 gi~ 478 (482)
||+
T Consensus 449 g~~ 451 (451)
T TIGR02915 449 GLK 451 (451)
T ss_pred CCC
T ss_conf 589
No 5
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=100.00 E-value=0 Score=888.04 Aligned_cols=461 Identities=23% Similarity=0.345 Sum_probs=410.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 883899869989999999999988988999893--799998608998999978546988899999999857898399992
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQT 87 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT 87 (482)
+.||||||||+.++..++.+|+..||+|.++.+ ++++.+.+..||+|++|++||+|||+++++++++.+|++||||+|
T Consensus 3 k~kILiVDDd~~~r~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlvl~Di~mP~~~Gl~ll~~lr~~~~~~pvIviT 82 (469)
T PRK10923 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMT 82 (469)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEE
T ss_conf 99799994989999999999987799899989999999998669999998789999989999999998429899789998
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 6899999998885057432222222222222222222222222---2222111111112222222222222222344320
Q gi|254780916|r 88 TQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVVP---SQENEHCALDSLIAVSPAMIQVVDLARKAGDCAI 164 (482)
Q Consensus 88 ~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~~---~~~~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~ 164 (482)
|+++++.+++|++.||+||+.|||++++|+..+.+|+...... ...........++|+|++|+++++++.++|.++.
T Consensus 83 ~~~~~~~av~A~~~GA~dyL~KP~~~~~L~~~v~ral~~~~~~~~~~~~~~~~~~~~liG~S~~m~~v~~~i~~~a~~~~ 162 (469)
T PRK10923 83 AHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNIQVNGPTTDIIGEAPAMQDVFRIIGRLSRSSI 162 (469)
T ss_pred CCCCHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHCCCC
T ss_conf 99998999999855704430088999999999999999999986544312106755654689999999999999858899
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC-CCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 48873277743679999998426754332101234655421002433112555-53221110012344667147516642
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDL-QTKNSAQFLGKFIEANGGTIVLEEPD 243 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~-~~~~~~~~~g~~~~a~~Gtl~l~ei~ 243 (482)
||||+||+||||+++||+||..|.|+++||+.|||+++|++++|++||||.++ |||+...+.|+|++|+|||||||||+
T Consensus 163 pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfi~vnC~~~~~~~~e~eLFG~~~gaf~ga~~~~~g~~e~a~~GTLfLdeI~ 242 (469)
T PRK10923 163 SVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIG 242 (469)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCEEHHHHH
T ss_conf 78998989826999999999748877999578767889977899997087667878864245873664389926566366
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00188999888877642001123553212343156521433211111123337999886543344677877442222556
Q gi|254780916|r 244 ALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLV 323 (482)
Q Consensus 244 ~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~ 323 (482)
.||+..|.+|+++|++++|+++|+.+++++|+||||+|++||.+++++|.||+|||||||+++|++||||||+|||+.|+
T Consensus 243 ~L~~~~Q~kLl~~L~~~~~~~~g~~~~~~~d~RiIaat~~~L~~~v~~g~Fr~dLyyrL~~~~I~lPpLReR~eDI~~L~ 322 (469)
T PRK10923 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLA 322 (469)
T ss_pred HCCHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEEECCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHCHHHHHHHH
T ss_conf 48999999999998559378579985122143799707879999866081779999864424015846544653499999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 67776410112233332111110001223389868999999999987438981068895454212445432234322222
Q gi|254780916|r 324 HFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACT 403 (482)
Q Consensus 324 ~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~ 403 (482)
+||+.+++.++|..+++++++|++.|.+|+||||||||+|+++|+++++.+..|+..+++..+...........
T Consensus 323 ~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~n~ier~~~~~~~~~i~~~dl~~~l~~~~~~~~~~~------ 396 (469)
T PRK10923 323 RHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVPDSTSQ------ 396 (469)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHCCCCCCCCC------
T ss_conf 99999999985999787899999999749999879999999999998579982547757298863337776545------
Q ss_pred CCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 233444321000000001123444543258999999999999999828727899978489988999999981888
Q gi|254780916|r 404 CYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREYNIE 478 (482)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~~gi~ 478 (482)
.................+.....+...+.++++||++|.++|++|+||+++||+.|||+|+|||||||||||+
T Consensus 397 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Er~~I~~aL~~~~gn~~~aA~~LGisR~TLyrKlkk~gi~ 469 (469)
T PRK10923 397 --MQPDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 (469)
T ss_pred --CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf --5774034442110011111342015899999999999999999909989999999898999999999986839
No 6
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=100.00 E-value=0 Score=878.64 Aligned_cols=435 Identities=28% Similarity=0.449 Sum_probs=398.5
Q ss_pred CC-CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 35-28838998699899999999999889889998937--9999860899899997854698889999999985789839
Q gi|254780916|r 7 LD-RHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPI 83 (482)
Q Consensus 7 m~-~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipv 83 (482)
|+ ++.+|||||||+.++..++.+|+..||+|.++.++ ++..+.+..||+|++|++||++||+++++++++..|++||
T Consensus 1 M~~~~~~ILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~~~DlvllD~~mp~~~Gl~lL~~l~~~~p~~pv 80 (441)
T PRK10365 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPV 80 (441)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCE
T ss_conf 99899859998398999999999999779989998999999999864899999988999999899999999842989828
Q ss_pred EEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9992689999999888505743222222222222222222222222222--22111111112222222222222222344
Q gi|254780916|r 84 IVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVVPSQ--ENEHCALDSLIAVSPAMIQVVDLARKAGD 161 (482)
Q Consensus 84 IiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~~~~--~~~~~~~~~LiG~S~~m~~v~~~i~~~a~ 161 (482)
||+|||++++.+++|++.||+||+.|||+.++|...+.+++........ .........++|+|++|+++++++.++|.
T Consensus 81 IviT~~~~~~~av~A~k~GA~Dyl~KP~~~~~L~~~i~~al~~~~~~~~~~~~~~~~~~~liG~S~am~~v~~~i~~~A~ 160 (441)
T PRK10365 81 LIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSIDAETPAVSASQFGMVGKSPAMQHLLSEIALVAP 160 (441)
T ss_pred EEEECCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCEECCHHHHHHHHHHHHHHC
T ss_conf 99969999899999998285123407888999999999999999876520000122257866689999999999999848
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC-CCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 3204887327774367999999842675433210123465542100243311255-553221110012344667147516
Q gi|254780916|r 162 CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVD-LQTKNSAQFLGKFIEANGGTIVLE 240 (482)
Q Consensus 162 ~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~-~~~~~~~~~~g~~~~a~~Gtl~l~ 240 (482)
++.||||+||+||||+++||+||..|.|+++|||.|||++++++++|++||||++ +|||+...+.|+|++|+|||||||
T Consensus 161 s~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfv~vnC~~l~~~l~eseLFG~~~gaftga~~~~~g~~~~A~gGTLfLd 240 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 (441)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCEECCC
T ss_conf 89948998999810999999999657877898079878989845558986177556878965346898778899825502
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64200188999888877642001123553212343156521433211111123337999886543344677877442222
Q gi|254780916|r 241 EPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIP 320 (482)
Q Consensus 241 ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~ 320 (482)
||++||+..|.|||++|++++|+|+|+++++++|+||||+|++||.++|.+|.||+|||||||+++|++||||||+||||
T Consensus 241 eI~~l~~~~Q~kLl~~l~~~~~~~~g~~~~~~~d~RiIaat~~~l~~~v~~g~Fr~dLy~rL~~~~i~lPpLReR~eDI~ 320 (441)
T PRK10365 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIP 320 (441)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCHHHHHHCCCCHHHHHHHHCCHHCCCCCCCCCCCHHH
T ss_conf 31529999999999877752100058873441363799837889999988198258999886011137826000620099
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 55667776410112233332111110001223389868999999999987438981068895454212445432234322
Q gi|254780916|r 321 WLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTET 400 (482)
Q Consensus 321 ~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~ 400 (482)
.|++||+++++.++++..++||++|++.|++|+||||||||+|+++|+++++.+..|+..+++..+.......
T Consensus 321 ~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvREL~n~iera~~~~~~~~i~~~~l~~~~~~~~~~~------- 393 (441)
T PRK10365 321 LLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPL------- 393 (441)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHCCCCCCC-------
T ss_conf 9999999999998499988889999999970999989999999999999957898688465754330688887-------
Q ss_pred CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 22223344432100000000112344454325899999999999999982872789997848998899999998
Q gi|254780916|r 401 ACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIRE 474 (482)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~ 474 (482)
........+.++|+++|.++|++|+||+++||+.|||+|+||||||||
T Consensus 394 --------------------------~~~~~~~~l~e~Er~~I~~aL~~~~gn~~~aA~~LGisR~tLyrKl~k 441 (441)
T PRK10365 394 --------------------------GQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 (441)
T ss_pred --------------------------CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf --------------------------766565669999999999999993998999999978899999999674
No 7
>TIGR01817 nifA Nif-specific regulatory protein; InterPro: IPR010113 This entry represents NifA, a DNA-binding regulatory protein for nitrogen fixation. Not included in this group are: the homologue in Aquifex aeolicus (which lacks nitrogenase), transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. In diazotrophic proteobacteria, the sigma54-dependent activator NifA activates transcription of the nif (nitrogen fixation) genes by a conserved mechanism common to members of the enhancer binding protein family. Although NifA proteins have similar domain structures, both transcriptional regulation of nifA expression and posttranslational regulation of NifA activity by oxygen and fixed nitrogen vary significantly from one organism to another. In Klebsiella pneumoniae and Azotobacter vinelandii, nifA is co-ordinately transcribed with a second gene, nifL, whose product inhibits NifA activity in response to oxygen and fixed nitrogen .; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0009399 nitrogen fixation.
Probab=100.00 E-value=0 Score=782.72 Aligned_cols=464 Identities=24% Similarity=0.314 Sum_probs=341.1
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCE------E-EEECCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHH--HHCCC---
Q ss_conf 899869989999999999988988------9-99893799998608998999978546988899999999--85789---
Q gi|254780916|r 13 VLIIDKDDEQIKIIKDHVESYGYD------V-FIVNVSDLSTISKIQVNVIFLSLINCEDDKENILKNIV--DKIPI--- 80 (482)
Q Consensus 13 ILIVDDd~~~~~~l~~~L~~~G~~------v-~~a~~~al~~l~~~~~dlillD~~mP~~dGlell~~i~--~~~p~--- 80 (482)
|-|.|||-....+-........+. + ..++.+++..+=+..-.+|+=|+---. -|+.++. -..++
T Consensus 42 i~l~d~ege~~~~~a~~~~~e~~~~lg~~~~ry~vgeg~ig~i~~~G~~lVv~~va~~~----lF~d~~~~~l~~~~e~~ 117 (574)
T TIGR01817 42 ISLSDSEGEPLLVAAIGWSEEEFAQLGSDDIRYRVGEGAIGQIVATGNSLVVPDVAAEP----LFLDRLSEVLSDPGEIP 117 (574)
T ss_pred EEEECCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCCHHHHHHHCCCEEEECCCCCCH----HHHHHHHHHHCCCCCEE
T ss_conf 89867888601101430386101123468850247340235663168706604667353----45776455405887431
Q ss_pred CCEEEEECC-CCHHH----HHHHHHCCCCCC-CCCCCCCCCCCC-CCCCCCC------------------------CC--
Q ss_conf 839999268-99999----998885057432-222222222222-2222222------------------------22--
Q gi|254780916|r 81 VPIIVQTTQ-DNIKI----LNCFLYNRISKF-FLNLVSRKQLCD-SIICALR------------------------EG-- 127 (482)
Q Consensus 81 ipvIiiT~~-~~~~~----~~~a~~~g~~d~-l~KP~~~~~L~~-~i~~al~------------------------~~-- 127 (482)
+|+|-+-=. .|-++ ....+..|..++ +..-+..-..++ .+.+++| ..
T Consensus 118 ~~FIgVPi~~~d~~~~GvL~~~r~~~g~~~~~~~~~vRFL~mVANL~gQtvRL~r~~~~~~~~~~~e~~~~~~~~~~~~s 197 (574)
T TIGR01817 118 VPFIGVPIKNADSETIGVLAIDRIKEGASRERLEEEVRFLEMVANLIGQTVRLHRLVAARRERLIAEAAQLSKQLRDKKS 197 (574)
T ss_pred CCEEECCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 11340226677777112267720688884134614543799999999878887445654201105567778875214001
Q ss_pred --CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf --222222211111111222222222222222234432048873277743679999998426754332101234655421
Q gi|254780916|r 128 --VVPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQD 205 (482)
Q Consensus 128 --~~~~~~~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~ 205 (482)
.....+......+.+||.||+|++|+++|.++|.+|+.||+.||+|||||++|++||++|+|+.+|||.+|||+||++
T Consensus 198 Ga~~~~~~~~~~~~~~i~G~Spam~~v~~~~~~vA~~nSTVLlRGESGTGKEl~A~AIH~~SpR~~~PFVK~NCAALse~ 277 (574)
T TIGR01817 198 GAEPEAARRRSGKEDGIVGKSPAMRQVVDQIKVVARSNSTVLLRGESGTGKELIAKAIHELSPRAKRPFVKLNCAALSET 277 (574)
T ss_pred CCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCC
T ss_conf 56554123312344740124789999998865201317667850565744334442340466455788545006447761
Q ss_pred CCHHHHHCCCCC-CCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 002433112555-5322111001234466714751664200188999888877642001123553212343156521433
Q gi|254780916|r 206 KIEKFLFGDVDL-QTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKN 284 (482)
Q Consensus 206 ~~e~~lFG~~~~-~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~ 284 (482)
++|||||||+|| ||||..+|+|+||.|||||||||||++.|+..|+||||+||||+|+||||++.+++|||||||||+|
T Consensus 278 lLESELFGHEKGAFTGA~~~RkGRFElAdGGTLFLDEIGEISPaFQAKLLRVLQEGEFERVGG~~TlKVdVRlvaATNrd 357 (574)
T TIGR01817 278 LLESELFGHEKGAFTGAVAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRD 357 (574)
T ss_pred HHHHHHHCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEEEEEEECCCCC
T ss_conf 12454513430146888751777533027883200001467856888998875210025327872488736788613735
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 21111112333799988654334467787744222255667776410112233332111110001223389868999999
Q gi|254780916|r 285 LLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNI 364 (482)
Q Consensus 285 L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~ 364 (482)
|++.|+.|.||+||||||||++|.|||||||.+|||.|+++||++|+.+.+++...|++.|++.|++|.||||||||||+
T Consensus 358 LE~aV~~GeFRaDLYYRinVvPl~lPPLRER~~DIP~LA~~fL~kf~~en~R~mL~~~~~Ai~~Lm~c~wPGNVRELENC 437 (574)
T TIGR01817 358 LEEAVAKGEFRADLYYRINVVPLILPPLRERREDIPLLAEAFLEKFNRENGRPMLTLSPSAIRVLMSCKWPGNVRELENC 437 (574)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHCCCCCCCCEEHHHH
T ss_conf 58897278973023554422234078777873116899999999876651872032267899897517899974004437
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCC---------CCCCCCCCCCCCCCCCH-----HHCCCCCCCCCCCCCC
Q ss_conf 999987438981068895454212445432234---------32222223344432100-----0000001123444543
Q gi|254780916|r 365 LLRAVIGLKDSHLTEDRFVLLLSREGKKEREFH---------TETACTCYTEGKSSDTI-----LDNLSQESIPAIGQDG 430 (482)
Q Consensus 365 i~r~~i~~~~~~i~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 430 (482)
|+|..+++.++.|+.+||.-.-.+......... ............+.... .........|......
T Consensus 438 ~eRtAtLs~~~~It~~df~c~~~~c~s~~L~~~~~~~~~~P~~~~~p~~~~~~~pla~~~~~PA~~~pa~~~~p~~~~~~ 517 (574)
T TIGR01817 438 VERTATLSRSGTITRSDFSCQSGQCLSKMLAKSSAYKKVDPAVPDAPLGAVSIVPLAETTALPAVESPASAALPAEVGLS 517 (574)
T ss_pred HHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHCCCCCCCCCCCCCC
T ss_conf 87787541688516423664278888888888887788778777888886532573014677522054334677667778
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 2-------589999999999999998287278999784899889999999818881449
Q gi|254780916|r 431 E-------VRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREYNIEVDSL 482 (482)
Q Consensus 431 ~-------~~~l~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~~gi~~d~~ 482 (482)
. ...+ -||+-+.+||++++|+|+|||++|||+.+-.=|.||+|||++..+
T Consensus 518 gteaCPavA~~l--~eRERli~AlE~aGWVQAKAARlLg~TPRQVgYalr~~~I~~kk~ 574 (574)
T TIGR01817 518 GTEACPAVAPTL--SERERLIAALEKAGWVQAKAARLLGLTPRQVGYALRKLNIEVKKL 574 (574)
T ss_pred CCCCCCCCCCCC--CCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC
T ss_conf 755455678872--317899999975153799999973786558999998848765669
No 8
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=100.00 E-value=0 Score=736.89 Aligned_cols=320 Identities=35% Similarity=0.548 Sum_probs=289.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 22111111112222222222222222344320488732777436799999984267543321012346554210024331
Q gi|254780916|r 133 ENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLF 212 (482)
Q Consensus 133 ~~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lF 212 (482)
......++.|+|+|++|.++.+.+.++|.+++||||.||+|||||++||+||+.|+|+++|||.||||++|++++|||||
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELF 317 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELF 317 (560)
T ss_pred CCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 44536610020589999999999986338998289953788668999999874484347980787643388888888872
Q ss_pred CCC-CCCCCCCCC-CCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 125-555322111-001234466714751664200188999888877642001123553212343156521433211111
Q gi|254780916|r 213 GDV-DLQTKNSAQ-FLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVK 290 (482)
Q Consensus 213 G~~-~~~~~~~~~-~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~ 290 (482)
|++ ++||||... ++|+||.|+|||||||||++||+++|+||||+||+++|+|+||++++++|+|||||||+||+++++
T Consensus 318 Gye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i~ 397 (560)
T COG3829 318 GYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMIA 397 (560)
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCEEEEHHHCCCCHHHHHHHHHHHHHCEEEECCCCCCEEEEEEEEECCCCCHHHHHH
T ss_conf 76776424644579976054416983771232039989999999987535378537887535678999425758999986
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12333799988654334467787744222255667776410112233332111110001223389868999999999987
Q gi|254780916|r 291 SHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVI 370 (482)
Q Consensus 291 ~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i 370 (482)
+|+||+||||||||++|++||||||+||||+|++||++++++.+++.++++++++++.|.+|+||||||||+|+|+|+++
T Consensus 398 ~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 398 EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred CCCCHHHHEEEECEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 39616553003040111477723382018999999999999872887666899999999868999609999999999981
Q ss_pred -HCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf -4389810688954542124454322343222222334443210000000011234445432589999999999999998
Q gi|254780916|r 371 -GLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKL 449 (482)
Q Consensus 371 -~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~E~~~I~~aL~~ 449 (482)
..++..|+.++++............ .. ...........++++|+.+|..||++
T Consensus 478 ~~~~~~~I~~~~lp~~~l~~k~~~~~----------------~~----------~~~~~~~l~~~~e~~Ek~~I~~aL~~ 531 (560)
T COG3829 478 LVESDGLIDADDLPAFALEEKEPRPE----------------TT----------KQIEVGSLKEALEEYEKHLIREALER 531 (560)
T ss_pred CCCCCCEEEHHHCCHHHHCCCCCCCC----------------CC----------CCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 06886622252262023113466767----------------66----------67666448889999999999999998
Q ss_pred HCCCHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 28727899978489988999999981888
Q gi|254780916|r 450 YRAQMSEVARRLGIGRSTLYRKIREYNIE 478 (482)
Q Consensus 450 ~~Gn~~~aA~~LGIsR~tL~rKlk~~gi~ 478 (482)
++||+++||+.|||||+|||||||+|+|+
T Consensus 532 ~~gn~~~aAk~LgIsrttL~rKlkk~~l~ 560 (560)
T COG3829 532 HGGNKSKAAKELGISRTTLYRKLKKYGLR 560 (560)
T ss_pred HCCCHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 27989899999699789999999985689
No 9
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=100.00 E-value=0 Score=704.82 Aligned_cols=319 Identities=28% Similarity=0.452 Sum_probs=280.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC-C
Q ss_conf 111122222222222222223443204887327774367999999842675433210123465542100243311255-5
Q gi|254780916|r 139 LDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVD-L 217 (482)
Q Consensus 139 ~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~-~ 217 (482)
...|||+|++|+++++.|.++|.|+.||||+||+||||+++||+||+.|.|+++|||.|||+++|++++|||||||++ +
T Consensus 185 ~~elIG~S~~m~~l~~~i~~vA~sd~pVLI~GEtGTGKelvAr~IH~~S~R~~~Pfv~vNCaalpe~l~EseLFGh~kGa 264 (510)
T PRK05022 185 QGEMIGQSPAMQQLKKEIEVVAASDLNVLITGETGVGKELVARAIHQASPRAVKPLVYLNCAALPESLAESELFGHVKGA 264 (510)
T ss_pred CCCEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCC
T ss_conf 89752089999999999999968999889889898139999999996688789985788899998567899865977788
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 53221110012344667147516642001889998888776420011235532123431565214332111111233379
Q gi|254780916|r 218 QTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKD 297 (482)
Q Consensus 218 ~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~d 297 (482)
|||+...+.|+||+|+|||||||||++||+.+|.||||+||+++|.|+|++++.++||||||+||+||.++|++|.||+|
T Consensus 265 FtGA~~~r~G~fe~A~gGTLfLDEI~~Lpl~~Q~KLLrvLq~g~iqrvG~~~~~~vdvRIIAATnrdL~~~V~~G~FR~D 344 (510)
T PRK05022 265 FTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVLAGRFRAD 344 (510)
T ss_pred CCCCCCCCCCCEEECCCCEEEEECHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEECCCCHHHHHHCCCHHHH
T ss_conf 68865567881017789879875745499999999999984795885589946666689996078359999883963899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC-
Q ss_conf 9988654334467787744222255667776410112233332111110001223389868999999999987438981-
Q gi|254780916|r 298 LYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDSH- 376 (482)
Q Consensus 298 Ly~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~~~~- 376 (482)
||||||+++|+|||||||+|||+.|+.||+++++.++|...++|+++|++.|.+|+||||||||+|+|+|+++.+.+..
T Consensus 345 LYyRLsv~~I~vPPLRER~eDI~lLa~~FLe~~~~~~g~~~~~ls~eAl~~L~~Y~WPGNVRELenvIeRA~lla~~~~~ 424 (510)
T PRK05022 345 LYHRLSVFPLPVPPLRERGDDVLLLAGYFLEQNRLRLGLSSLRLSPDAQAALLQYDWPGNVRELEHVISRAALLARARRA 424 (510)
T ss_pred HHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99876204034808655554099999999999999829898988899999997099997899999999999997156667
Q ss_pred -----CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf -----068895454212445432234322222233444321000000001123444543258999999999999999828
Q gi|254780916|r 377 -----LTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYR 451 (482)
Q Consensus 377 -----i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~E~~~I~~aL~~~~ 451 (482)
|...++.......... .. ... ...............++++||++|.++|++++
T Consensus 425 ~~~~~i~~~~l~~~~~~~~~~-------------~~-~~~--------~~~~~~~~~~~Lr~a~e~~Er~lI~~AL~~~~ 482 (510)
T PRK05022 425 GDIVTLEAQHLDLPEASAASV-------------PL-PPP--------EAAAAPVASQNLREATEAFQRQLIRQALAQHN 482 (510)
T ss_pred CCCCCCCHHHCCCCCCCCCCC-------------CC-CCC--------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 764425676648754455555-------------67-775--------54456767899999999999999999999919
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf 7278999784899889999999818881
Q gi|254780916|r 452 AQMSEVARRLGIGRSTLYRKIREYNIEV 479 (482)
Q Consensus 452 Gn~~~aA~~LGIsR~tL~rKlk~~gi~~ 479 (482)
||+++||+.|||+|+|||||||+|||+.
T Consensus 483 GN~s~AAr~LGIsRstLyRk~KrLGIk~ 510 (510)
T PRK05022 483 GNWAAAARALELDRANLHRLAKRLGLKD 510 (510)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHCCCC
T ss_conf 9899999997989999999999808999
No 10
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=100.00 E-value=0 Score=705.65 Aligned_cols=330 Identities=31% Similarity=0.475 Sum_probs=287.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 11111112222222222222222344320488732777436799999984267543321012346554210024331125
Q gi|254780916|r 136 HCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDV 215 (482)
Q Consensus 136 ~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~ 215 (482)
.....+|||+|++|..+.+.|..+|.|+++|||.||+|||||++||+||+.|.|+++|||.+||+++|++++|||||||+
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHe 298 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHE 298 (550)
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCC
T ss_conf 02445623069999999999998726898079845888538999999987375557986663122253788888874533
Q ss_pred C-CCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 5-553221110012344667147516642001889998888776420011235532123431565214332111111233
Q gi|254780916|r 216 D-LQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVF 294 (482)
Q Consensus 216 ~-~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~f 294 (482)
| +||||..++.|+||.|+|||||||||++||++.|.||||+||+|+|+|+|+++++++|||||||||+||+++|.+|+|
T Consensus 299 KGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V~~G~F 378 (550)
T COG3604 299 KGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVRDGEF 378 (550)
T ss_pred CCCCCCCHHCCCCCEEECCCCEEECHHHCCCCHHHHHHHHHHHHHCCEEECCCCCEEEEEEEEEECCCHHHHHHHHCCCC
T ss_conf 22333510146763565579757602203678778899999986365253479963677789982135309999874951
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 37999886543344677877442222556677764101122333321111100012233898689999999999874389
Q gi|254780916|r 295 RKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKD 374 (482)
Q Consensus 295 r~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~~ 374 (482)
|+||||||||++|.+||||||++|||+|+.||+++++.++|+....++++|++.|.+|+||||||||+|+|+|+++.+ +
T Consensus 379 RaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla-~ 457 (550)
T COG3604 379 RADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLA-G 457 (550)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC-C
T ss_conf 554532102001378983458866799999999999886397640339899999973999971999998999999970-4
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 81068895454212445432234322222233444321000000001123444543258999999999999999828727
Q gi|254780916|r 375 SHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQM 454 (482)
Q Consensus 375 ~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~E~~~I~~aL~~~~Gn~ 454 (482)
..++..++ ..+............ ..+ .+..... ...|. .-......+++||+.|.+||++++||+
T Consensus 458 ~~~~~~d~-~~l~~~~~~~~~~~~--~~~-----~p~~~~~-----~~~p~--~~~l~~~~~~~eR~~I~~aL~~~~~~~ 522 (550)
T COG3604 458 RLTRRGDL-CTLELSLSALLWKTL--PAP-----EPSALPE-----PALPG--EHTLREATEEFERQLIIAALEETNGNW 522 (550)
T ss_pred CCCCCCCE-EEHHHHHHCCCCCCC--CCC-----CCCCCCC-----CCCCC--CCCHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 76777651-016555301212467--899-----8655677-----55776--565155577899999999999819819
Q ss_pred HHHHHHHCCCHHHHHHHHHHHCCCCCC
Q ss_conf 899978489988999999981888144
Q gi|254780916|r 455 SEVARRLGIGRSTLYRKIREYNIEVDS 481 (482)
Q Consensus 455 ~~aA~~LGIsR~tL~rKlk~~gi~~d~ 481 (482)
++||+.||+.|+||-++||+|||++..
T Consensus 523 a~AAr~LGl~~~~L~~~~kRlGI~~~~ 549 (550)
T COG3604 523 AGAARRLGLTRRTLLYRMKRLGIKVKK 549 (550)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999589988999999972888578
No 11
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=100.00 E-value=0 Score=662.48 Aligned_cols=312 Identities=29% Similarity=0.521 Sum_probs=278.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 21111111122222222222222223443204887327774367999999842675433210123465542100243311
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG 213 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG 213 (482)
.....|+.++|+|++|+++++++.++|.+++||||+||+||||+++||+||+.|.|+++||+.|||+++|++++|++|||
T Consensus 198 ~~~~~F~~iig~S~~m~~v~~~a~r~A~~d~pVLI~GEsGTGKellAraIH~~S~R~~~pFv~vnC~alp~~l~eseLFG 277 (513)
T PRK10820 198 QDVSAFSQIVAVSPKMKHVVEQARKLAMLSAPLLITGDTGTGKDLFAYACHLASPRAKKPYLALNCASIPEDAVESELFG 277 (513)
T ss_pred CCCCCHHHHEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCC
T ss_conf 54168777510899999999999998598998899898982499999999966887899826888998996789998638
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHH
Q ss_conf 25555322111001234466714751664200188999888877642001123553212343156521433211111123
Q gi|254780916|r 214 DVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHV 293 (482)
Q Consensus 214 ~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~ 293 (482)
|. ...+.|+|++|+|||||||||++||+.+|.|||++|+++.|+|+|+.+++++||||||+|+.||.++|++|.
T Consensus 278 ~a------~~~~~G~fe~A~gGTLfLdEI~~l~~~~Q~kLLr~Lq~~~~~rvG~~~~~~~dvRiIaaT~~dL~~lv~~g~ 351 (513)
T PRK10820 278 HA------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGL 351 (513)
T ss_pred CC------CCCCCCCEEECCCCEEEEECHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEECCCHHHHHHHHCCC
T ss_conf 76------668897557858988999783659999999999998689799659985356778999626530999987298
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 33799988654334467787744222255667776410112233332111110001223389868999999999987438
Q gi|254780916|r 294 FRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLK 373 (482)
Q Consensus 294 fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~ 373 (482)
||+|||||||+++|++||||||+||||+|++||+.+++.++|++.++|+++|++.|.+|+||||||||+|+|+|+++++.
T Consensus 352 FReDLyyRL~v~~I~lPpLReR~eDI~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNVREL~n~iera~~~~~ 431 (513)
T PRK10820 352 FREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLSADLSTVLTRYGWPGNVRQLKNAIYRALTQLE 431 (513)
T ss_pred CCHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 50889998616725588834465569999999999999975999898479999999708999799999999999999579
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98106889545421244543223432222223344432100000000112344454325899999999999999982872
Q gi|254780916|r 374 DSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQ 453 (482)
Q Consensus 374 ~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~E~~~I~~aL~~~~Gn 453 (482)
+..|+.+|+....... . .... . +.. . ........+++|+.+|.+++..+ ||
T Consensus 432 g~~i~~~di~lp~~~~---------~--~~~~-----~----~~~----~----~~sL~e~~~~~Er~~l~~l~~~~-~~ 482 (513)
T PRK10820 432 GYELRPQDILLPDYDA---------A--TVAV-----G----EDA----M----EGSLDDITSRFERSVLTQLYRNY-PS 482 (513)
T ss_pred CCCCCHHHCCCCCCCC---------C--CCCC-----C----CCC----C----CCCHHHHHHHHHHHHHHHHHHHC-CC
T ss_conf 9853499828854344---------4--4676-----6----444----4----79999999999999999999878-89
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 789997848998899999998188814
Q gi|254780916|r 454 MSEVARRLGIGRSTLYRKIREYNIEVD 480 (482)
Q Consensus 454 ~~~aA~~LGIsR~tL~rKlk~~gi~~d 480 (482)
.++||+.|||||+|||+|||+|||++.
T Consensus 483 ~~kaAk~LGISrttL~~KlkkyGI~~k 509 (513)
T PRK10820 483 TRKLAKRLGVSHTAIANKLREYGLSQK 509 (513)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf 999999979989999999998089987
No 12
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=100.00 E-value=0 Score=661.49 Aligned_cols=334 Identities=25% Similarity=0.355 Sum_probs=284.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC-CCCCC
Q ss_conf 12222222222222222344320488732777436799999984267543321012346554210024331125-55532
Q gi|254780916|r 142 LIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDV-DLQTK 220 (482)
Q Consensus 142 LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~-~~~~~ 220 (482)
+||+|++.-+|.+++.++|..+.||||.||.|||||+||.-+|..|+|.++|||++|||+|+++|+|||||||+ ++|||
T Consensus 1 liG~S~aFL~vLeqvS~lA~l~rPVLiiGERGTGKELiA~RLHyLS~RW~~Plv~LNCAALse~LldSELFGHEaGAFTG 80 (349)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQQPLVKLNCAALSENLLDSELFGHEAGAFTG 80 (349)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCHHH
T ss_conf 98872789999998751046788668861467468999988533246554886266101278255556653100100130
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 21110012344667147516642001889998888776420011235532123431565214332111111233379998
Q gi|254780916|r 221 NSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYY 300 (482)
Q Consensus 221 ~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~ 300 (482)
|..++.|+||+|+|||||||||..+|..+|.|||||+|=|+|+||||.+...+|||||||||.||..|+++|.||.||.+
T Consensus 81 A~~rh~GRFERAdGGTLFLDElAtas~~VQEKLLRViEYG~fERVGG~~~l~vDVRlvaATN~DLP~lA~~G~FRaDLLD 160 (349)
T TIGR02974 81 AKKRHEGRFERADGGTLFLDELATASLAVQEKLLRVIEYGEFERVGGSQTLKVDVRLVAATNADLPALAAEGRFRADLLD 160 (349)
T ss_pred HCCCCCCCCEECCCCCCHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCEEEECCEEEECCCCCHHHHHHCCCCCCHHHH
T ss_conf 30468898544368873888871421676786612010130330178604773513676214136989865898401455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 86543344677877442222556677764101122333-32111110001223389868999999999987438981068
Q gi|254780916|r 301 RISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQ-ISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDSHLTE 379 (482)
Q Consensus 301 rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~-~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~~~~i~~ 379 (482)
||+=-.|++||||+|.+||++|++||--++|.+.+.+. .+||+.|.+.|++|+||||||||||||||+|.-........
T Consensus 161 RLAFDVi~LPPLR~R~~DI~lLAe~FA~~Ma~EL~~~~F~GFt~~A~~~L~~Y~WPGNvRELkNvvERsVyR~~~~~~~i 240 (349)
T TIGR02974 161 RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGREEAPI 240 (349)
T ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCH
T ss_conf 44565507978888723278999999999999707865511438999999706888852124446766653058766420
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC------------HHHCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHH
Q ss_conf 8954542124454322343222222334443210------------00000001123444543-2589999999999999
Q gi|254780916|r 380 DRFVLLLSREGKKEREFHTETACTCYTEGKSSDT------------ILDNLSQESIPAIGQDG-EVRRLSDIEKEIIGLA 446 (482)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~l~e~E~~~I~~a 446 (482)
+++...-...+....................... ..........+....+. ......++|+++|.+|
T Consensus 241 ~~i~~dPF~Spw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~dl~~~~~~~E~~ll~~A 320 (349)
T TIGR02974 241 EEIIIDPFASPWRRPQAAPAAAEVNSTPTDEPSPKESAPDVTTTQQVDTGTSSSSVPNASFPLDLKQAVQDYEIELLQQA 320 (349)
T ss_pred HHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 12010778888887766643334444444432233345655202433202553101232168768999999999999999
Q ss_pred HHHHCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99828727899978489988999999981
Q gi|254780916|r 447 MKLYRAQMSEVARRLGIGRSTLYRKIREY 475 (482)
Q Consensus 447 L~~~~Gn~~~aA~~LGIsR~tL~rKlk~~ 475 (482)
|+++++||.+||+.||++.--|+.-||||
T Consensus 321 L~~~~fNQr~AAe~LGLtYHQlRg~LkKy 349 (349)
T TIGR02974 321 LAEAQFNQRKAAELLGLTYHQLRGLLKKY 349 (349)
T ss_pred HHHHCCCHHHHHHHHCCCHHHHHHHHCCC
T ss_conf 98730347899987257368999863149
No 13
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=100.00 E-value=0 Score=637.89 Aligned_cols=315 Identities=30% Similarity=0.481 Sum_probs=285.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 11111111222222222222222234432048873277743679999998426754332101234655421002433112
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGD 214 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~ 214 (482)
....++.++|.||.|+++.+++.++|.++.||||+||+||||+++||+||+.|.|+++|||.|||+++|++++|++|||+
T Consensus 320 ~~~~f~~l~g~s~~~~~~~~~a~~~a~~~~pVLI~GE~GtGKe~lAraIH~~S~r~~~pfv~vnC~ai~~~~~e~elfG~ 399 (639)
T PRK11388 320 VSHTFDHMPQDSPQMRRLIHFGRQAAKSSFPILLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLLPDEALAEEFLGS 399 (639)
T ss_pred CCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCC
T ss_conf 88885544679999999999999996889968988989810999999999557778998189878989846789987387
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 55553221110012344667147516642001889998888776420011235532123431565214332111111233
Q gi|254780916|r 215 VDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVF 294 (482)
Q Consensus 215 ~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~f 294 (482)
..+. ....+.|+|++|+|||||||||++||+++|.+|+++|++++|.|+|+.+.+++|+|||++|+.||.++|++|.|
T Consensus 400 ~~~~--~~~g~~g~~e~A~gGTL~LdeI~~lp~~~Q~~LlrvL~~~~~~r~g~~~~~~vdvRiiaat~~~l~~~v~~g~f 477 (639)
T PRK11388 400 DRTD--SENGRLSKFELAHGGTLFLEKVEYLSVELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRF 477 (639)
T ss_pred CCCC--CCCCCCCHHHCCCCCEEEECCHHHCCHHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEECCHHHHHHHHCCCC
T ss_conf 7676--43466862440369828846726499999999999986593785699946664279997364508999874985
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 37999886543344677877442222556677764101122333321111100012233898689999999999874389
Q gi|254780916|r 295 RKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKD 374 (482)
Q Consensus 295 r~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~~ 374 (482)
|+||||||++++|+|||||||++|||.|++||+.+++.+++.. ..|+++|++.|.+|+||||||||+|+++++++.+.+
T Consensus 478 r~dLyyrl~~~~i~lPpLReR~~Di~~L~~~~l~~~~~~~~~~-~~ls~~a~~~L~~y~WPGNvrEL~nvl~~a~~~~~~ 556 (639)
T PRK11388 478 SRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSYRWPGNDFELRSVIENLALSSDN 556 (639)
T ss_pred HHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 4999987674410573323253439999999999999971999-998999999997289997999999999999983899
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 81068895454212445432234322222233444321000000001123444543258999999999999999828727
Q gi|254780916|r 375 SHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQM 454 (482)
Q Consensus 375 ~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~E~~~I~~aL~~~~Gn~ 454 (482)
+.|+.++++..+.......... .. . .....+++++||++|..+|++|+||+
T Consensus 557 ~~I~~~~Lp~~~~~~~~~~~~~-----------~~------------~------~~~~~~l~~~Er~~I~~aL~~~~gN~ 607 (639)
T PRK11388 557 GRIRLSDLPEHLFTEQATDDVS-----------AP------------R------LSTSLSLAELEKQAIINAAQVCGGRI 607 (639)
T ss_pred CCCCHHHCCHHHHHCCCCCCCC-----------CC------------C------CCCCCCHHHHHHHHHHHHHHHHCCCH
T ss_conf 8426797808775157777777-----------67------------7------77656799999999999999949979
Q ss_pred HHHHHHHCCCHHHHHHHHHHHCCCCCC
Q ss_conf 899978489988999999981888144
Q gi|254780916|r 455 SEVARRLGIGRSTLYRKIREYNIEVDS 481 (482)
Q Consensus 455 ~~aA~~LGIsR~tL~rKlk~~gi~~d~ 481 (482)
++||+.|||||+|||||||+|||+.|.
T Consensus 608 s~aA~~LGIsR~TLYRKlk~~gI~~~~ 634 (639)
T PRK11388 608 QEMAALLGIGRTTLWRKMKQHGIDANQ 634 (639)
T ss_pred HHHHHHHCCCHHHHHHHHHHHCCCHHH
T ss_conf 999999898999999999994969788
No 14
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=100.00 E-value=0 Score=637.04 Aligned_cols=319 Identities=24% Similarity=0.402 Sum_probs=281.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC-CC
Q ss_conf 11112222222222222222344320488732777436799999984267543321012346554210024331125-55
Q gi|254780916|r 139 LDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDV-DL 217 (482)
Q Consensus 139 ~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~-~~ 217 (482)
.+.|||+|++|+++++++.++|.++.||||+||+||||+++||+||+.|.|+++||+.|||+.++++++|++||||+ ++
T Consensus 5 ~~~liG~S~~m~~v~~~~~~~A~~~~pVLI~GE~GtGK~~~Ar~IH~~S~r~~~pfi~v~C~~l~~~~~e~~LFG~~~g~ 84 (325)
T PRK11608 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGA 84 (325)
T ss_pred CCCCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCC
T ss_conf 89985899999999999999968899989889898379999999996588679997788779899778899872775567
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 53221110012344667147516642001889998888776420011235532123431565214332111111233379
Q gi|254780916|r 218 QTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKD 297 (482)
Q Consensus 218 ~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~d 297 (482)
|+|+.....|+|++|+|||||||||++||+..|.+|+++|+++.|.|+|+.++..+|+||||+|+.||.+++++|.||+|
T Consensus 85 ~~~~~~~~~g~le~a~gGTL~L~eI~~l~~~~Q~~Ll~~l~~~~~~r~g~~~~~~~~~RiIa~t~~~l~~lv~~g~fr~d 164 (325)
T PRK11608 85 FTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRAD 164 (325)
T ss_pred CCCCCCCCCCHHHCCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHH
T ss_conf 67753246873435689869973745479999999999986490885799876656468871332208999983956799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99886543344677877442222556677764101122333-32111110001223389868999999999987438981
Q gi|254780916|r 298 LYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQ-ISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDSH 376 (482)
Q Consensus 298 Ly~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~-~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~~~~ 376 (482)
|||||++++|+|||||||+|||+.|++||+.+++++++.+. ++|+++|++.|.+|+||||||||+|+++|+++.+.+..
T Consensus 165 Ly~rL~~~~I~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~n~ierav~~~~~~~ 244 (325)
T PRK11608 165 LLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 (325)
T ss_pred HHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 98565301115868454710199999999999999829998888899999999619999659999999999998568876
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 06889545421244543223432222223344432100000000112344454325899999999999999982872789
Q gi|254780916|r 377 LTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSE 456 (482)
Q Consensus 377 i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~E~~~I~~aL~~~~Gn~~~ 456 (482)
+..+++............... .. .....|.. .......++++||++|..||++++||+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~---------~~----------~~~~~~~~-~~~l~~~~~~~Ek~~I~~aL~~~~gn~~~ 304 (325)
T PRK11608 245 YPLDDIIIDPFKRRPPEEAIA---------VS----------EATSLPTL-PLDLREFQHQQEKELLQRSLQQAKFNQKR 304 (325)
T ss_pred CCHHHHCCCHHHCCCCCCCCC---------CC----------CCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 555542137121056556778---------77----------75456677-86899999999999999999993998999
Q ss_pred HHHHHCCCHHHHHHHHHHHCC
Q ss_conf 997848998899999998188
Q gi|254780916|r 457 VARRLGIGRSTLYRKIREYNI 477 (482)
Q Consensus 457 aA~~LGIsR~tL~rKlk~~gi 477 (482)
||+.|||||+|||+|||||||
T Consensus 305 aA~~LGIsR~tL~~klkky~l 325 (325)
T PRK11608 305 AAELLGLTYHQFRALLKKHQI 325 (325)
T ss_pred HHHHHCCCHHHHHHHHHHCCC
T ss_conf 999988899999999997589
No 15
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR; InterPro: IPR012704 At least five distinct pathways exist for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR which is, in most cases, divergently transcribed from the operon that encodes the genes involved in the methylcitric acid cycle of propionate catabolism. This protein is required for the expression of the proteins involved in this pathway . 2-methylcitric acid, an intermediate in this pathway, has been proposed to be a co-activator of PrpR .; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0019629 propionate catabolic process 2-methylcitrate cycle, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=630.15 Aligned_cols=352 Identities=28% Similarity=0.423 Sum_probs=280.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 57432222222222222222222222222222211111111222222222222222234432048873277743679999
Q gi|254780916|r 102 RISKFFLNLVSRKQLCDSIICALREGVVPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSR 181 (482)
Q Consensus 102 g~~d~l~KP~~~~~L~~~i~~al~~~~~~~~~~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~ 181 (482)
|+.|--+-.|...+-++.+.+.++..... +-.......+|+|+|+.|.+|+..|..+|.|++.|||.||+|||||++|+
T Consensus 282 GaadGtvftfqesraverldr~~~~~tr~-~lrtR~~~~dl~G~s~~Me~VR~~v~lYArs~atVLi~GE~GTGKElvAq 360 (658)
T TIGR02329 282 GAADGTVFTFQESRAVERLDRALRSATRN-QLRTRYRLDDLLGESAAMEQVRALVRLYARSAATVLIEGESGTGKELVAQ 360 (658)
T ss_pred CCCCCCEEEEHHHHHHHHHHHHHCCHHHH-HHHCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
T ss_conf 53355045402247889998862130355-43203454765389821389999998526886506751477722899999
Q ss_pred HHH--------HCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC-CCCCCCCCC-CCCCCCCCCCCEEEECCCCHHHHHHHH
Q ss_conf 998--------4267543321012346554210024331125-555322111-001234466714751664200188999
Q gi|254780916|r 182 FIH--------ESGKRAFFPFFIVNCGMIDQDKIEKFLFGDV-DLQTKNSAQ-FLGKFIEANGGTIVLEEPDALPLAVQG 251 (482)
Q Consensus 182 ~iH--------~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~-~~~~~~~~~-~~g~~~~a~~Gtl~l~ei~~L~~~~Q~ 251 (482)
.|| +.+.|+..|||.|||+++++.|+|+||||++ ++|||+-.. +.|+||-|++||||||||++||+++|+
T Consensus 361 ~~H~EY~~R~~~~~~r~~~pFVAiNCGAi~EsLLEaELFGYeeGAFTGaRrGG~~GL~E~Ah~GTLFLDEIGEmPLPLQt 440 (658)
T TIGR02329 361 AIHREYALRYDQLSGRRDRPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQT 440 (658)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEHHHCCCCCHHHH
T ss_conf 97599987466650133788468747465688887764267666501677677612222005795100100357861467
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88887764200112355321234315652143321111112333799988654334467787744222255667776410
Q gi|254780916|r 252 RIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFC 331 (482)
Q Consensus 252 ~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~ 331 (482)
||||+|||+++.|+|++.|+++||||||+|+.+|++.|++|+||.|||||||++.|.+||||||++||.+|+.+|+.+..
T Consensus 441 RLLRVLeEreV~RvG~~~P~~VDvRvvaAth~~L~~~v~~GrFR~DLfYRL~~Lri~lPpLR~R~~Di~~La~~~l~~~~ 520 (658)
T TIGR02329 441 RLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALETAVQQGRFRRDLFYRLSILRIDLPPLRERPDDILPLAAEYLKQAL 520 (658)
T ss_pred HHHHHHHCCCEEECCCCCCCEEEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 77776512214761787540244434331222258798578824228999999851478766864459999999998753
Q ss_pred CCCCCCC--CCCCCCC-------CCCCCCCCCCCCHHHHHHHHHHHHHHCC------CCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 1122333--3211111-------0001223389868999999999987438------98106889545421244543223
Q gi|254780916|r 332 TKNAIKQ--ISISDKA-------LSLLTKYPWIDNVQELKNILLRAVIGLK------DSHLTEDRFVLLLSREGKKEREF 396 (482)
Q Consensus 332 ~~~~~~~--~~ls~~a-------~~~L~~y~WPGNvREL~n~i~r~~i~~~------~~~i~~~~~~~~l~~~~~~~~~~ 396 (482)
++.-+.. ..+|+.+ -+.|++|+||||||||+|++||+++.-. .+.|+.+-+....+ +.....+.
T Consensus 521 rrePr~~l~~P~s~~~~q~L~~~~~~L~~y~WpGNvRELrnl~ERl~~~l~dtda~~~~~~t~~~l~~~~P-er~s~le~ 599 (658)
T TIGR02329 521 RREPRAALALPLSEAALQELAAVEDALQRYAWPGNVRELRNLVERLALYLSDTDAEPEGALTPDLLEALAP-ERQSILEL 599 (658)
T ss_pred CCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC-CHHHHHHH
T ss_conf 22515765188638999887437889861689984378877999998886403556331100899998587-52479999
Q ss_pred CCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 432222223344432100000000112344454325899999999999999982872789997848998899999998
Q gi|254780916|r 397 HTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIRE 474 (482)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~ 474 (482)
........+. ++.... ...-+.++-..|.+||++++||+..+|+.|||||+||||+||+
T Consensus 600 a~~s~~~Gyd-----~T~a~~--------------~~~rs~v~a~~~~~aL~~~~G~~~a~a~~LGiSrTTLWRrL~~ 658 (658)
T TIGR02329 600 AEASTKAGYD-----KTSADS--------------LRERSRVEALAVRAALERFQGDRAAAAKALGISRTTLWRRLKA 658 (658)
T ss_pred HHHHCCCCCC-----CCCHHH--------------HHHHHCCCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHCC
T ss_conf 9752246776-----677477--------------7342043357689999872789689985427642457776139
No 16
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=100.00 E-value=0 Score=579.14 Aligned_cols=289 Identities=34% Similarity=0.549 Sum_probs=267.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC-CCCCCC
Q ss_conf 2222222222222222344320488732777436799999984267543321012346554210024331125-555322
Q gi|254780916|r 143 IAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDV-DLQTKN 221 (482)
Q Consensus 143 iG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~-~~~~~~ 221 (482)
.+.++.....++++.+++.++.||++.||+||||+.+||+||+.|. ..+|||.|||+++|+++.||||||+. ++|||+
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~-~~gpfvAvNCaAip~~liesELFGy~~GafTga 394 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSE-AAGPFVAVNCAAIPEALIESELFGYVAGAFTGA 394 (606)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCC-CCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 4557889999999988762478768538765568999999985365-569837998503447764677744576564330
Q ss_pred CCC-CCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 111-0012344667147516642001889998888776420011235532123431565214332111111233379998
Q gi|254780916|r 222 SAQ-FLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYY 300 (482)
Q Consensus 222 ~~~-~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~ 300 (482)
... ..|++++|+|||||||||++||..+|.+|||+|+++.+.|+|+.+ +++|+|||++|++||..+|++|.||+||||
T Consensus 395 ~~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyy 473 (606)
T COG3284 395 RRKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYY 473 (606)
T ss_pred HHCCCCCCCEECCCCCCHHHHHHHCHHHHHHHHHHHHHHCCEECCCCCC-EEEEEEEEECCCCCHHHHHHCCCCHHHHHH
T ss_conf 0106655410157876089876114189999999998618252358852-157799983467579999875971487888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 86543344677877442222556677764101122333321111100012233898689999999999874389810688
Q gi|254780916|r 301 RISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDSHLTED 380 (482)
Q Consensus 301 rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~~~~i~~~ 380 (482)
|||+++|++||||||+|+||+|.+++.++ +. ....+++++++.|..|.||||||||.|++++++++++++.+...
T Consensus 474 rL~~~~i~lP~lr~R~d~~~~l~~~~~~~-~~----~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g~~~~~ 548 (606)
T COG3284 474 RLNAFVITLPPLRERSDRIPLLDRILKRE-ND----WRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSDGGRIRVS 548 (606)
T ss_pred HHCCEEECCCCHHCCCCCHHHHHHHHHHC-CC----CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_conf 74471550686110466578999999872-68----77568999999998578998289999999999870799735714
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 95454212445432234322222233444321000000001123444543258999999999999999828727899978
Q gi|254780916|r 381 RFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARR 460 (482)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~E~~~I~~aL~~~~Gn~~~aA~~ 460 (482)
|++..+..+... ...+.|+..+..||+.|+||+++||+.
T Consensus 549 dlp~~l~~~~~~-----------------------------------------~~~~~~~~~l~~al~~~~~~is~aa~~ 587 (606)
T COG3284 549 DLPPELLEEQAT-----------------------------------------PREDIEKAALLAALQATNGNISEAARL 587 (606)
T ss_pred CCCHHHHHHHCC-----------------------------------------CCCCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 498888754325-----------------------------------------300157999999999808979999998
Q ss_pred HCCCHHHHHHHHHHHCCCC
Q ss_conf 4899889999999818881
Q gi|254780916|r 461 LGIGRSTLYRKIREYNIEV 479 (482)
Q Consensus 461 LGIsR~tL~rKlk~~gi~~ 479 (482)
|||+|+|||||||+|||.+
T Consensus 588 lgi~R~T~yrklk~~gi~~ 606 (606)
T COG3284 588 LGISRSTLYRKLKRHGISK 606 (606)
T ss_pred HCCCHHHHHHHHHHHCCCC
T ss_conf 5997888999999737789
No 17
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=551.78 Aligned_cols=313 Identities=29% Similarity=0.506 Sum_probs=282.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 21111111122222222222222223443204887327774367999999842675433210123465542100243311
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG 213 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG 213 (482)
+....|+.+++.|..|+.+..++.++|..++|.||+||+||||+++|++-|..|+|.++||+.+||+++|++..||||||
T Consensus 198 ~~~~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG 277 (511)
T COG3283 198 QDVSGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFG 277 (511)
T ss_pred CCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHC
T ss_conf 75424477873039999999999865403787687448886188999987443845589736764477966676777735
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHH
Q ss_conf 25555322111001234466714751664200188999888877642001123553212343156521433211111123
Q gi|254780916|r 214 DVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHV 293 (482)
Q Consensus 214 ~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~ 293 (482)
|..| ....+|.||+|+|||+|||||++||+.+|.||||+|++|.|+|||+.+++.+|||+||+|..||.++|++|.
T Consensus 278 ~apg----~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~ 353 (511)
T COG3283 278 HAPG----DEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGK 353 (511)
T ss_pred CCCC----CCCCCCHHHHCCCCEEEEEHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHCCC
T ss_conf 6888----777634634026974885003324998999999986277600037754578778999616666999986372
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 33799988654334467787744222255667776410112233332111110001223389868999999999987438
Q gi|254780916|r 294 FRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLK 373 (482)
Q Consensus 294 fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~ 373 (482)
||+||||||||.++++||||||.+||++|+++|++++|.+.|.+.+.|+++++..|+.|+||||||||+|++.||+..+.
T Consensus 354 fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~E 433 (511)
T COG3283 354 FREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLLE 433 (511)
T ss_pred HHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 58878877501342388500065210689999999999975899876687899999877999609999999999999851
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98106889545421244543223432222223344432100000000112344454325899999999999999982872
Q gi|254780916|r 374 DSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQ 453 (482)
Q Consensus 374 ~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~E~~~I~~aL~~~~Gn 453 (482)
+..++.+++......... ...+..... ..-+.+..||+.++.+-+..+- .
T Consensus 434 g~~l~i~~i~Lp~~~~~~---------------------~~~~~~~~g--------sLdei~~~fE~~VL~rly~~yP-S 483 (511)
T COG3283 434 GYELRIEDILLPDYDAAT---------------------VVGEDALEG--------SLDEIVSRFERSVLTRLYRSYP-S 483 (511)
T ss_pred CCCCCHHHCCCCCCCCCC---------------------CCCHHHCCC--------CHHHHHHHHHHHHHHHHHHHCC-C
T ss_conf 674443200467755343---------------------452133028--------7999999999999999998597-4
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 789997848998899999998188814
Q gi|254780916|r 454 MSEVARRLGIGRSTLYRKIREYNIEVD 480 (482)
Q Consensus 454 ~~~aA~~LGIsR~tL~rKlk~~gi~~d 480 (482)
..+-|+.||+|-++.-.|+++|||.+.
T Consensus 484 tRkLAkRLgvSHTaIAnKLRqyGi~~~ 510 (511)
T COG3283 484 TRKLAKRLGVSHTAIANKLRQYGIGQK 510 (511)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf 889999858737999989998277778
No 18
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=100.00 E-value=0 Score=545.41 Aligned_cols=328 Identities=29% Similarity=0.414 Sum_probs=281.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 21111111122222222222222223443204887327774367999999842675-43321012346554210024331
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKR-AFFPFFIVNCGMIDQDKIEKFLF 212 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r-~~~~fi~v~c~~~~~~~~e~~lF 212 (482)
.....+..+||.|++|+++++++..++.+..||||+||+||||+++|+.||..|.| +++|||.|||+++++++.+++||
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLF 151 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELF 151 (403)
T ss_pred CCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCHHHHHHH
T ss_conf 02215666635688899999999861899984798668875388999999986121358987997777737677777773
Q ss_pred CCCCC-CCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCH
Q ss_conf 12555-53221110012344667147516642001889998888776420011235532123431565214332111111
Q gi|254780916|r 213 GDVDL-QTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKS 291 (482)
Q Consensus 213 G~~~~-~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~ 291 (482)
||++| |||+...+.|+||+|+|||||||||++||++.|.+||++|++++|+|+|++++.++|||+||||+.|+.+.+..
T Consensus 152 G~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~ 231 (403)
T COG1221 152 GHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLA 231 (403)
T ss_pred CCCCCEEECCCCCCCCHHEECCCCEEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEECCCCCHHHHHHH
T ss_conf 20000002566786764205279777656365379858999999987186576688888677740451356687999874
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23337999886543344677877442222556677764101122333321111100012233898689999999999874
Q gi|254780916|r 292 HVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIG 371 (482)
Q Consensus 292 g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~ 371 (482)
| +|||||+++.+|++||||||++||++|++||+..+|++.+.+...++++|+..|.+|+||||||||+|+|+++++.
T Consensus 232 g---~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~ 308 (403)
T COG1221 232 G---ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQ 308 (403)
T ss_pred H---CCHHHHHCCCEECCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 0---5255641675431897243555599999999999999739998888899999998488998399999999999997
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 38981068895454212445432234322222233444321000000001123444543258999999999999999828
Q gi|254780916|r 372 LKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYR 451 (482)
Q Consensus 372 ~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~E~~~I~~aL~~~~ 451 (482)
+.+..+..++............. . .. ..... ....++....+........+|...+..+|.++.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~----~--~~--~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 372 (403)
T COG1221 309 ASGEGQDLEDLIISIRLDELPGL----N--DV--PAGIS--------LQLNLPELPLSLRETSLEQVEERLLQKALEQNK 372 (403)
T ss_pred HCCCCCCCCCCCCHHHHCCCCCC----C--CC--HHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 35456785102211221136543----3--31--01101--------233267776655533346789988899999852
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 72789997848998899999998188814
Q gi|254780916|r 452 AQMSEVARRLGIGRSTLYRKIREYNIEVD 480 (482)
Q Consensus 452 Gn~~~aA~~LGIsR~tL~rKlk~~gi~~d 480 (482)
||+.++|+.|||+|.++++||++|++...
T Consensus 373 ~~~~~~~~~lg~s~~~l~~~l~~~~~~~~ 401 (403)
T COG1221 373 GNKKKAARLLGISRKTLRYRLKKYGLTTF 401 (403)
T ss_pred CCHHHHHHHCCCCHHHHHHHHHHHCCCCC
T ss_conf 02999998839989999999987033336
No 19
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=100.00 E-value=0 Score=374.40 Aligned_cols=167 Identities=37% Similarity=0.589 Sum_probs=162.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC-CCC
Q ss_conf 1222222222222222234432048873277743679999998426754332101234655421002433112555-532
Q gi|254780916|r 142 LIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDL-QTK 220 (482)
Q Consensus 142 LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~-~~~ 220 (482)
|||+|++|+++++++.++|.++.||||+||+||||+++||+||+.|.|+++||+.|||++++++++|++|||++++ |+|
T Consensus 1 lIG~S~~m~~l~~~i~~~a~~~~pVLI~GE~GtGK~~lAr~IH~~S~r~~~pfi~vnc~~~~~~~le~~LFG~~~g~f~g 80 (168)
T pfam00158 1 LIGESPAMQEVLELAKRVAPTDATVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80 (168)
T ss_pred CEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 97389999999999999958899889989998888999999998524356883125678998779999875876676689
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 21110012344667147516642001889998888776420011235532123431565214332111111233379998
Q gi|254780916|r 221 NSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYY 300 (482)
Q Consensus 221 ~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~ 300 (482)
+...+.|+|++|+|||||||||++||++.|.+|+++|++++|.|+|+++++++|+||||+|+.||.++|++|.||+||||
T Consensus 81 a~~~~~G~le~A~gGTL~LdeI~~L~~~~Q~~Ll~~L~~~~~~~~g~~~~~~~~vRiIast~~~L~~~v~~G~Fr~DLyy 160 (168)
T pfam00158 81 AVSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160 (168)
T ss_pred CCCCCCCCEEECCCCEEECCCHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEECCCCHHHHHHCCCCHHHHHH
T ss_conf 87578996422699878802441399999999999985796997799845888549999659889999883996399888
Q ss_pred HHHHHHHH
Q ss_conf 86543344
Q gi|254780916|r 301 RISVFLIN 308 (482)
Q Consensus 301 rL~~~~i~ 308 (482)
|||+++|+
T Consensus 161 rLnv~~ie 168 (168)
T pfam00158 161 RLNVVPIE 168 (168)
T ss_pred HHCEEECC
T ss_conf 86523269
No 20
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=100.00 E-value=9.8e-45 Score=335.93 Aligned_cols=317 Identities=22% Similarity=0.310 Sum_probs=268.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CCCEEEEEECCCCCHHHHHHHHHHHCC---CCCCCCCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 111222222222222222234-432048873277743679999998426---7543321012346554210024331125
Q gi|254780916|r 140 DSLIAVSPAMIQVVDLARKAG-DCAIPIMIQGEFGVGKKRLSRFIHESG---KRAFFPFFIVNCGMIDQDKIEKFLFGDV 215 (482)
Q Consensus 140 ~~LiG~S~~m~~v~~~i~~~a-~~~~~vli~Ge~GtGK~~~A~~iH~~s---~r~~~~fi~v~c~~~~~~~~e~~lFG~~ 215 (482)
+++-+.+|+..+.+++|+++| .|.+|+|+.|++|.||..+||.|++.- ..-.++||.|||+++-.+-.+|.||||.
T Consensus 184 sgiatrnp~fnrmieqierva~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghv 263 (531)
T COG4650 184 SGIATRNPHFNRMIEQIERVAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHV 263 (531)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHH
T ss_conf 33321585778899999999861469768646887436689999999998887537862788630004752889987640
Q ss_pred C-CCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 5-553221110012344667147516642001889998888776420011235532123431565214332111111233
Q gi|254780916|r 216 D-LQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVF 294 (482)
Q Consensus 216 ~-~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~f 294 (482)
+ +|||+...+.|++..|+||.||||||++|..+.|+.||.++++++|+|.||+..+.+|+.+|+.|.+||.+.|++|.|
T Consensus 264 kgaftga~~~r~gllrsadggmlfldeigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~f 343 (531)
T COG4650 264 KGAFTGARESREGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKF 343 (531)
T ss_pred HCCCCCCHHHHHHHHCCCCCCEEEHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH
T ss_conf 01314633455442433778657567433247527889999988712677887400031067764118889999863613
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC------CCCCCHHHHHHHHHHH
Q ss_conf 3799988654334467787744222255667776410112233332111110001223------3898689999999999
Q gi|254780916|r 295 RKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKY------PWIDNVQELKNILLRA 368 (482)
Q Consensus 295 r~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y------~WPGNvREL~n~i~r~ 368 (482)
|+|||-|+|.+++.+|-|+.|+|||.+-++|-+++++...|.. ..|..+|......+ .|.||+|||..-|.|+
T Consensus 344 redl~arinlwtf~lpgl~qr~ediepnldyelerha~~~g~~-vrfntearra~l~fa~spqa~w~gnfrelsasvtrm 422 (531)
T COG4650 344 REDLYARINLWTFTLPGLRQRQEDIEPNLDYELERHASLTGDS-VRFNTEARRAWLAFATSPQATWRGNFRELSASVTRM 422 (531)
T ss_pred HHHHHHHHHEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCE-EEEEHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHH
T ss_conf 7878876311354066311570006988347899988861863-552079888899750583011126688876899999
Q ss_pred HHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 87438981068895454212445432234322222233444321000000001123444543258999999999999999
Q gi|254780916|r 369 VIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMK 448 (482)
Q Consensus 369 ~i~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~E~~~I~~aL~ 448 (482)
..++.++.|+.+-+...+.+.......... ..+..+.. .....|+-+.+.-++.++.
T Consensus 423 atlad~grit~~~ve~ei~rlr~~w~~~~p--------------~~l~~llg---------~~a~aldlfdrmqle~v~~ 479 (531)
T COG4650 423 ATLADSGRITLDVVEDEINRLRYNWQESRP--------------SALTALLG---------AEAEALDLFDRMQLEHVIA 479 (531)
T ss_pred HHHHCCCCEEHHHHHHHHHHHHHHHHHCCC--------------CHHHHCCC---------CCHHHHHHHHHHHHHHHHH
T ss_conf 887127830088789999999987641386--------------02330346---------6527765788888999999
Q ss_pred HHCCCHH--HHH-HHHCCCH---------HHHHHHHHHHCCCCC
Q ss_conf 8287278--999-7848998---------899999998188814
Q gi|254780916|r 449 LYRAQMS--EVA-RRLGIGR---------STLYRKIREYNIEVD 480 (482)
Q Consensus 449 ~~~Gn~~--~aA-~~LGIsR---------~tL~rKlk~~gi~~d 480 (482)
-|.+.++ .|- ++..+|| ..|++.+..+|++-+
T Consensus 480 vcr~aktls~agr~lf~vsrq~ka~vndadrlrkylarfgl~w~ 523 (531)
T COG4650 480 ICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWE 523 (531)
T ss_pred HHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHH
T ss_conf 98711516577677753333036898708999999998488799
No 21
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB; InterPro: IPR011879 PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself . It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006817 phosphate transport.
Probab=99.94 E-value=1.2e-26 Score=207.83 Aligned_cols=169 Identities=17% Similarity=0.228 Sum_probs=134.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH--CCCCCEEE
Q ss_conf 883899869989999999999988988999893--79999860899899997854698889999999985--78983999
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDK--IPIVPIIV 85 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~--~p~ipvIi 85 (482)
+++|||||||+.++++++-.|+..||+|..|++ +|+..+.+..||+||||||+||.+|+|+|+++|.. .-+|||||
T Consensus 2 ~~~iLvVEDE~AirEl~~~~L~~~gy~v~~A~d~~~A~~~~~E~~PDLILLDWMLPG~SGIel~R~Lr~~~~Tr~iPIIM 81 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERLPDLILLDWMLPGTSGIELARRLRREPETRAIPIIM 81 (226)
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCEEE
T ss_conf 87256770826899999998416894699807979999998607998899614789975699998734763314888177
Q ss_pred EECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 92689999999888505743222222222222222222222222222221111111122222222222222223443204
Q gi|254780916|r 86 QTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVVPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIP 165 (482)
Q Consensus 86 iT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~~~~~~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~ 165 (482)
+||-++.+.-+.|+..||+||++|||++.+|+++|+..+|+..... ..+.....+| .+=....|+..++.|
T Consensus 82 LTARGeE~Drv~GLetGADDYvtKPFSp~EL~ARikAVLRR~~P~~-~~~~i~~~~l--------~lD~~~HRV~~~~~~ 152 (226)
T TIGR02154 82 LTARGEEEDRVRGLETGADDYVTKPFSPRELLARIKAVLRRIRPEL-SDEVIEVGDL--------ELDPVAHRVKRGGQP 152 (226)
T ss_pred EECCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCHHH-HCCEEEECCE--------EECCCCCEEEECCEE
T ss_conf 4055560001131136887503678865889999999983167124-2020110347--------775102404313602
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 88732777436799999984267543321
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIHESGKRAFFPF 194 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH~~s~r~~~~f 194 (482)
|-| |+| =+ |.+|.+-.....-|
T Consensus 153 ~~l-GPT-----Ef-RLL~FFM~HPeRV~ 174 (226)
T TIGR02154 153 LEL-GPT-----EF-RLLHFFMTHPERVY 174 (226)
T ss_pred CCC-CCH-----HH-HHHHHHHHCCCCEE
T ss_conf 146-870-----47-88999862377344
No 22
>PRK10693 response regulator of RpoS; Provisional
Probab=99.92 E-value=1.2e-24 Score=193.90 Aligned_cols=121 Identities=12% Similarity=0.218 Sum_probs=110.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 28838998699899999999999889889998937--9999860899899997854698889999999985789839999
Q gi|254780916|r 9 RHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQ 86 (482)
Q Consensus 9 ~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIii 86 (482)
..+||||||||+.+|..++.+|++.||+|..|.++ |++.+.+..||+||+|++||+|||+++|+++|+..+++|||++
T Consensus 6 ~gkkILIVDDd~~~r~~l~~~L~~~G~~V~~A~nG~eAl~~l~~~~pDLIi~Dl~MP~mdGlell~~lr~~~~~~PVIvl 85 (337)
T PRK10693 6 VGKQILIVEDEPVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKFVEHLRNRGDQTPVLVI 85 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 89989999499999999999999789999998999999999865899999996899999989999999985899649999
Q ss_pred ECCCCHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 2689999999888505743222222-222222222222222222
Q gi|254780916|r 87 TTQDNIKILNCFLYNRISKFFLNLV-SRKQLCDSIICALREGVV 129 (482)
Q Consensus 87 T~~~~~~~~~~a~~~g~~d~l~KP~-~~~~L~~~i~~al~~~~~ 129 (482)
|++++.+.+++|++.||.||+.||+ +..+|.+++...++....
T Consensus 86 Ta~~~~~d~v~al~~GA~DyL~KPI~d~~~Lr~~v~a~l~~~~~ 129 (337)
T PRK10693 86 SATENMADIAKALRLGVEDVLLKPVKDLNRLREAVFACLYPSMF 129 (337)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 86899999999997499589978969999999999987517778
No 23
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.91 E-value=7.4e-24 Score=188.26 Aligned_cols=121 Identities=9% Similarity=0.198 Sum_probs=111.0
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHH-CCCE-EEEECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 35288389986998999999999998-8988-999893--7999986089989999785469888999999998578983
Q gi|254780916|r 7 LDRHKRVLIIDKDDEQIKIIKDHVES-YGYD-VFIVNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVP 82 (482)
Q Consensus 7 m~~~~rILIVDDd~~~~~~l~~~L~~-~G~~-v~~a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ip 82 (482)
|+.+.||||||||+.++.+++.+|+. .||. |.+|++ +|++.+++.+||+||+|++||++||+++++++++..+.+|
T Consensus 1 M~~~i~VLIVEDd~~v~~~l~~~L~~~~gf~~V~~A~~~~eA~~~l~~~~pDLvLLDi~LPd~~Glell~~lr~~~~~~~ 80 (225)
T PRK10046 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGD 80 (225)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 99988699995989999999999972899549999899999999997359999998289899979999999996487998
Q ss_pred EEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999926899999998885057432222222222222222222222
Q gi|254780916|r 83 IIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREG 127 (482)
Q Consensus 83 vIiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~ 127 (482)
||++||+++.+.+++|++.|+.||+.|||+.++|.+++.+-.+..
T Consensus 81 VI~iTA~~d~~~~~~Al~~Ga~DYLvKPf~~erl~~~L~~y~~~~ 125 (225)
T PRK10046 81 VVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 (225)
T ss_pred EEEEECCCCHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHH
T ss_conf 899968999999999997499831028999999999999999999
No 24
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.91 E-value=1.1e-23 Score=187.16 Aligned_cols=122 Identities=15% Similarity=0.193 Sum_probs=114.9
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 3528838998699899999999999889889998937--99998608998999978546988899999999857898399
Q gi|254780916|r 7 LDRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPII 84 (482)
Q Consensus 7 m~~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvI 84 (482)
|+++.||||||||+.++..++..|+..||+|..+.++ +++.+....||+|++|++||++||+++|+++|+..+.+|||
T Consensus 2 m~~~~kILiVEDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~~~~~~~DlvilDi~lp~~dG~~l~~~iR~~~~~~pII 81 (239)
T PRK09468 2 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQNNPTPII 81 (239)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCEE
T ss_conf 99897899990999999999999998899999989999999999758998999878998888734677787505787789
Q ss_pred EEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99268999999988850574322222222222222222222222
Q gi|254780916|r 85 VQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGV 128 (482)
Q Consensus 85 iiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~ 128 (482)
++|++++.+..+.|+..||.||+.|||++.+|+.++...+++..
T Consensus 82 ~LTa~~~~~d~i~~l~~GADDYi~KPf~~~EL~aRI~allrR~~ 125 (239)
T PRK09468 82 MLTAKGEEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRQA 125 (239)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 99466787899999976986885589998999999999986323
No 25
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.90 E-value=3.7e-23 Score=183.27 Aligned_cols=121 Identities=12% Similarity=0.156 Sum_probs=112.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 3528838998699899999999999889889998937--99998608998999978546988899999999857898399
Q gi|254780916|r 7 LDRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPII 84 (482)
Q Consensus 7 m~~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvI 84 (482)
|.+ .||||||||+.++..+...|+..||+|..+.++ ++..+...+||+|++|++||++||+++|+++|+..+++|||
T Consensus 1 M~~-~kILiVEDd~~l~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvilDi~LP~~~G~~l~~~iR~~~~~~pII 79 (229)
T PRK11083 1 MQQ-PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVGLPDISGFELCRQLRAFHPALPVI 79 (229)
T ss_pred CCC-CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 999-9999996999999999999998899999989999999999718998999738899987688999999708997299
Q ss_pred EEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99268999999988850574322222222222222222222222
Q gi|254780916|r 85 VQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGV 128 (482)
Q Consensus 85 iiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~ 128 (482)
++|+.++.+....|...||.||+.|||++++|..++...+++..
T Consensus 80 ~lta~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrR~~ 123 (229)
T PRK11083 80 FLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRVK 123 (229)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 98367898999999975998773087428999999999997643
No 26
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.90 E-value=5.3e-23 Score=182.17 Aligned_cols=116 Identities=15% Similarity=0.226 Sum_probs=106.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH--CCCCCEEE
Q ss_conf 8838998699899999999999889889998937--9999860899899997854698889999999985--78983999
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDK--IPIVPIIV 85 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~--~p~ipvIi 85 (482)
+.|||||||++..+.+++..|+..||+|.+|.++ |++.+.+.+||+||+|++||+|||+++|+.+|+. ..++|||+
T Consensus 2 ~~rILiVdD~~~~~~~l~~~L~~~~y~v~~a~~G~eAL~~~~~~~PDLILlDi~MP~mdG~ev~r~Lk~~~~~~~iPVIv 81 (457)
T PRK09581 2 TARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIEICEREQPDIILLDVMMPGMDGFEVCRRLKSDPATAHIPVVM 81 (457)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 97199994989999999999987899999989999999999718999899928779999999999996598889984999
Q ss_pred EECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9268999999988850574322222222222222222222
Q gi|254780916|r 86 QTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALR 125 (482)
Q Consensus 86 iT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~ 125 (482)
+||+++.+...+|+..||.||+.||++...|..++...++
T Consensus 82 lTa~~d~e~~~~al~~GA~DYL~KP~~~~~L~~ri~~l~r 121 (457)
T PRK09581 82 VTALDDPSDRVRGLEAGADDFLTKPINDVALFARVKSLTR 121 (457)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 9789999999999864887899899998999999999998
No 27
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.89 E-value=6.6e-23 Score=181.52 Aligned_cols=117 Identities=14% Similarity=0.181 Sum_probs=110.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 838998699899999999999889889998937--999986089989999785469888999999998578983999926
Q gi|254780916|r 11 KRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQTT 88 (482)
Q Consensus 11 ~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT~ 88 (482)
.||||||||+.++..++..|+..||+|..+.++ +++.+....||+|++|++||++||+++|+++|+..+++|||++|+
T Consensus 1 MkILiVEDd~~l~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~~~~DlvilDi~lP~~~G~~l~~~iR~~~~~~PII~Lta 80 (226)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTA 80 (226)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEEC
T ss_conf 98999939999999999999878999999899999999985189999998899999987204356776167960999944
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899999998885057432222222222222222222222
Q gi|254780916|r 89 QDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREG 127 (482)
Q Consensus 89 ~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~ 127 (482)
.++.+....|+..||.||+.|||++++|..++...+++.
T Consensus 81 ~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~allrr~ 119 (226)
T PRK09836 81 LGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 (226)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 589889999997699688636876799999999996626
No 28
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.89 E-value=1.1e-22 Score=179.98 Aligned_cols=118 Identities=14% Similarity=0.195 Sum_probs=110.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH--CCCCCEEE
Q ss_conf 883899869989999999999988988999893--79999860899899997854698889999999985--78983999
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDK--IPIVPIIV 85 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~--~p~ipvIi 85 (482)
++||||||||+.++..++..|+..||+|..|.+ ++++.+.+..||+|++|++||++||+++|+++|+. .+++|||+
T Consensus 2 ~~kILiVEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~l~~~~~DliilDi~lP~~dG~~~~~~ir~~~~~~~~PII~ 81 (229)
T PRK10161 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVM 81 (229)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 97199995999999999999997799999989999999998528998999978998876335878877502468975899
Q ss_pred EECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 926899999998885057432222222222222222222222
Q gi|254780916|r 86 QTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREG 127 (482)
Q Consensus 86 iT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~ 127 (482)
+|+.++.+..+.|...||.||+.|||++.+|++++...+++.
T Consensus 82 lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~aRi~a~lrR~ 123 (229)
T PRK10161 82 LTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 (229)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 955666577999987698765208999899999999997123
No 29
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.89 E-value=6.1e-23 Score=181.74 Aligned_cols=117 Identities=16% Similarity=0.169 Sum_probs=110.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 838998699899999999999889889998937--999986089989999785469888999999998578983999926
Q gi|254780916|r 11 KRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQTT 88 (482)
Q Consensus 11 ~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT~ 88 (482)
.||||||||+.++..++..|+..||+|..+.++ |++.+.+.+||+|++|++||++||+++|+++|+..+.+|||++|+
T Consensus 1 mkILlVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~a~~~~~~~~~DlvilDi~lP~~dG~~l~~~iR~~~~~~PII~lta 80 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA 80 (219)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEEEC
T ss_conf 98999938999999999999987999999899999999986289699999799999985631010465278887899806
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899999998885057432222222222222222222222
Q gi|254780916|r 89 QDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREG 127 (482)
Q Consensus 89 ~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~ 127 (482)
+++.+....|+..||.||+.|||++.+|..++...+++.
T Consensus 81 ~~~~~d~i~~l~~GAdDYl~KPf~~~eL~ari~allrr~ 119 (219)
T PRK10336 81 RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 899999999997699888688976799999999996115
No 30
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.89 E-value=5.9e-23 Score=181.88 Aligned_cols=120 Identities=19% Similarity=0.268 Sum_probs=111.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 528838998699899999999999889889998937--999986089989999785469888999999998578983999
Q gi|254780916|r 8 DRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIV 85 (482)
Q Consensus 8 ~~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIi 85 (482)
++++||||||||+.++..++..|+..||+|..+.++ |+..+....||+|++|++||++||+++|+++|+. .++|||+
T Consensus 4 ~~k~kILiVEDd~~l~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~~~~DlviLDi~LP~~dG~~l~~~iR~~-~~~PII~ 82 (240)
T CHL00148 4 SSKEKILVVDDEASIRRILETRLSIIGYEVITASDGEEALKLFHQEQPDLVILDVMMPKLDGYGVCQEIRKE-SDVPIIM 82 (240)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCC-CCCCEEE
T ss_conf 999829999398999999999999789999998999999999974799999997999988866305414037-9954899
Q ss_pred EECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9268999999988850574322222222222222222222222
Q gi|254780916|r 86 QTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGV 128 (482)
Q Consensus 86 iT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~ 128 (482)
+|+.++.+..+.|+..||.||++|||++++|++++...+++..
T Consensus 83 LTa~~~~~d~v~gl~~GADDYi~KPf~~~EL~aRi~allrr~~ 125 (240)
T CHL00148 83 LTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRVN 125 (240)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 8167898999999976997895278447999999999986630
No 31
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.88 E-value=2.6e-22 Score=177.32 Aligned_cols=116 Identities=13% Similarity=0.190 Sum_probs=104.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHH-CCCEEEE-ECC--HHHHHH--HCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 88389986998999999999998-8988999-893--799998--60899899997854698889999999985789839
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVES-YGYDVFI-VNV--SDLSTI--SKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPI 83 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~-~G~~v~~-a~~--~al~~l--~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipv 83 (482)
+.||||||||+.++++++.+|++ .||+|.. |++ +|++.+ .+.+||+||+|++||++||+++++++|+..|++||
T Consensus 1 MirVLIVEDD~~v~~~~~~~l~~~~gf~vv~~a~t~~eA~~~l~~~~~~~DLILLDi~mPd~~Glell~~lR~~~~~~~V 80 (239)
T PRK10430 1 MINVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDV 80 (239)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 98799992989999999999851899089999899999999996579998589978999999789999999985899819
Q ss_pred EEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999268999999988850574322222222222222222222
Q gi|254780916|r 84 IVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALR 125 (482)
Q Consensus 84 IiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~ 125 (482)
|++||+++.+++.+|++.|+.||+.|||..++|.+++.+-.+
T Consensus 81 I~ITa~~d~~~v~~Al~~Ga~DYLiKPf~~~rl~~~L~~y~~ 122 (239)
T PRK10430 81 IVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 (239)
T ss_pred EEEEECCCHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHH
T ss_conf 999726889999999983950304899999999999999999
No 32
>pfam00072 Response_reg Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.
Probab=99.88 E-value=4.2e-22 Score=175.87 Aligned_cols=109 Identities=21% Similarity=0.281 Sum_probs=104.0
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 8998699899999999999889889998937--99998608998999978546988899999999857898399992689
Q gi|254780916|r 13 VLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQTTQD 90 (482)
Q Consensus 13 ILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT~~~ 90 (482)
|||||||+.++..++.+|+..||+|.++.++ +++.+++.+||+|++|++||++||+++++++|+..|++|||++||++
T Consensus 1 ILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~~dlvi~Di~mP~~dG~el~~~ir~~~~~~piI~~T~~~ 80 (111)
T pfam00072 1 VLIVDDDPLIRELLRQLLEKEGYVVAEADDGEEALELLKEKRPDLILLDIRMPGMDGLELLRRIRRRPPTTPVIVLTAHG 80 (111)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 09998989999999999998899999989999999999847998999953689950157999997359998099997508
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999998885057432222222222222222
Q gi|254780916|r 91 NIKILNCFLYNRISKFFLNLVSRKQLCDSII 121 (482)
Q Consensus 91 ~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~ 121 (482)
+.+...+++..|+.+|+.||+++++|+++++
T Consensus 81 ~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~ir 111 (111)
T pfam00072 81 DEEDAVEALKAGANDFLSKPFDPEELVAALR 111 (111)
T ss_pred CHHHHHHHHHCCCCEEEECCCCHHHHHHHCC
T ss_conf 9999999997798779949999899998529
No 33
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.88 E-value=4.6e-22 Score=175.58 Aligned_cols=121 Identities=12% Similarity=0.186 Sum_probs=110.1
Q ss_pred CC-CCCCEEEECCCHHHHHHHHHHHHHCCC-EEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH--CCC
Q ss_conf 35-288389986998999999999998898-89998937--9999860899899997854698889999999985--789
Q gi|254780916|r 7 LD-RHKRVLIIDKDDEQIKIIKDHVESYGY-DVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDK--IPI 80 (482)
Q Consensus 7 m~-~~~rILIVDDd~~~~~~l~~~L~~~G~-~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~--~p~ 80 (482)
|+ ++.||||||||+.++.+++.+|+..|| .|.++.++ +++.+.+..||+|++|+.||+|||+++++++|+. .+.
T Consensus 1 m~~k~lrILivDD~~~~r~~l~~~L~~~g~~~v~~a~~g~~al~~~~~~~~Dlil~D~~MP~~dG~el~~~ir~~~~~~~ 80 (129)
T PRK10610 1 MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGLELLKTIRADGAMSA 80 (129)
T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 98999899999798999999999999869978999899999999998589999998189999989999999985777789
Q ss_pred CCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 83999926899999998885057432222222222222222222222
Q gi|254780916|r 81 VPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREG 127 (482)
Q Consensus 81 ipvIiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~ 127 (482)
+|||++|++++.+...++...|+.+|+.|||+...|.+++.+.+++.
T Consensus 81 ~Pii~~T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~vl~r~ 127 (129)
T PRK10610 81 LPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 127 (129)
T ss_pred CCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 96899988689999999998699889989899999999999999763
No 34
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.88 E-value=5.7e-22 Score=174.92 Aligned_cols=116 Identities=18% Similarity=0.226 Sum_probs=108.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 838998699899999999999889889998937--999986089989999785469888999999998578983999926
Q gi|254780916|r 11 KRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQTT 88 (482)
Q Consensus 11 ~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT~ 88 (482)
.||||||||+.++..++..|+..||+|.+|.++ ++..+.+..||+|++|++||++||+++|+++|+. +++|||++||
T Consensus 1 MkILiVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~al~~~~~~~~DlvilDi~lP~~dG~~l~~~iR~~-~~~pII~lta 79 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTA-KQTPVICLTA 79 (223)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHC-CCCCEEEEEC
T ss_conf 989999698999999999999889999998999999999852899999984999873689999999856-8864899956
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899999998885057432222222222222222222222
Q gi|254780916|r 89 QDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREG 127 (482)
Q Consensus 89 ~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~ 127 (482)
.++.+..+.|+..||.||+.|||++++|++++...+++.
T Consensus 80 ~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrr~ 118 (223)
T PRK11517 80 RDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 (223)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 556578999998398776208977899999999996414
No 35
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.88 E-value=2.3e-22 Score=177.67 Aligned_cols=118 Identities=17% Similarity=0.228 Sum_probs=109.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8838998699899999999999889889998937--99998608998999978546988899999999857898399992
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQT 87 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT 87 (482)
+.+|||||||+.++..++..|+..||+|..+.++ ++..+....||+|++|++||++||+++|+++|+.. .+|||++|
T Consensus 1 M~~ILivEDd~~l~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~~~DlviLDi~lP~~dG~~l~~~iR~~~-~~pII~lt 79 (225)
T PRK10529 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWS-AIPVIVLS 79 (225)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEECCC-CCCEEEEE
T ss_conf 99899997989999999999998899999979999999986117998999807888888763310001279-98789995
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68999999988850574322222222222222222222222
Q gi|254780916|r 88 TQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGV 128 (482)
Q Consensus 88 ~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~ 128 (482)
+.++.+....|+..||.||+.|||++.+|+.++...+++..
T Consensus 80 a~~~~~d~i~~l~~GADDYl~KPf~~~eL~aRi~a~lrr~~ 120 (225)
T PRK10529 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 (225)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 46898999999976987654078545999999999971403
No 36
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.87 E-value=1e-21 Score=173.12 Aligned_cols=118 Identities=15% Similarity=0.205 Sum_probs=109.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 28838998699899999999999889889998937--9999860899899997854698889999999985789839999
Q gi|254780916|r 9 RHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQ 86 (482)
Q Consensus 9 ~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIii 86 (482)
.+.+||||||++.+|..++.+|+..||.|..+.++ +++.+...+||+|++|+.||++||+++++++++..|.+|||++
T Consensus 2 ~k~tIliVDDh~~vr~gl~~lL~~~~~~v~~~~~~~~~l~~~~~~~pdlvllDi~mP~~~G~e~l~~l~~~~p~~~vivl 81 (202)
T PRK09390 2 TKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLRFGCVVTDVRMPGIDGIELLRRLKARGSPLPVIVM 81 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEE
T ss_conf 99979998499999999999999889989998999999999765797999877999998960799998722899867999
Q ss_pred ECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2689999999888505743222222222222222222222
Q gi|254780916|r 87 TTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALRE 126 (482)
Q Consensus 87 T~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~ 126 (482)
|++++.+.+.++++.||.+|+.||++.++|+..+..+++.
T Consensus 82 T~~~~~~~~~~al~~GA~gyl~K~~~~~~L~~aI~~~l~~ 121 (202)
T PRK09390 82 TGHGDVPLAVEAMKLGAIDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred EECCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 7457488889999829464455999999999999999971
No 37
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.87 E-value=2.2e-22 Score=177.77 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=108.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8838998699899999999999889889998937--99998608998999978546988899999999857898399992
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQT 87 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT 87 (482)
+.||||||||+.++..++..|+..||+|..+.++ +++.+.+..||+|++|++||++||+++|++||+.. +.|||++|
T Consensus 1 M~kILlVEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~~~~~~~DlvilDi~LP~~dG~~l~~~iR~~~-~~PiI~lt 79 (240)
T PRK10701 1 MNTIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEETILREQPDLVLLDIMLPGKDGMTICRDLRPKW-SGPIVLLT 79 (240)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCCC-CCCEEEEE
T ss_conf 99899997999999999999988799999989999999998617999999928997678878763110258-98789994
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 689999999888505743222222222222222222222222
Q gi|254780916|r 88 TQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVV 129 (482)
Q Consensus 88 ~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~ 129 (482)
+.++....+.|+..||.||+.|||++.+|++++...+++...
T Consensus 80 a~~~~~d~v~gl~~GADDYl~KPf~~~eL~aRi~a~lrr~~~ 121 (240)
T PRK10701 80 SLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 (240)
T ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf 057578899999768877641799879999999999965325
No 38
>PRK11173 two-component response regulator; Provisional
Probab=99.87 E-value=1.5e-21 Score=171.95 Aligned_cols=120 Identities=15% Similarity=0.169 Sum_probs=109.2
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 3528838998699899999999999889889998937--99998608998999978546988899999999857898399
Q gi|254780916|r 7 LDRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPII 84 (482)
Q Consensus 7 m~~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvI 84 (482)
|++ .||||||||+.++..++..|+..||+|..+.++ +++.+....||+|++|++||++||+++++++|+.. .+|+|
T Consensus 1 m~~-~~ILiVEDD~~~~~~l~~~L~~~G~~V~~a~~~~ea~~~l~~~~~DlvilDi~lp~~~G~~l~~~iR~~~-~~piI 78 (237)
T PRK11173 1 MQT-PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSENDINLVIMDINLPGKNGLLLARELREQA-NVALM 78 (237)
T ss_pred CCC-CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCC-CCCEE
T ss_conf 999-9899995989999999999998899999989999999998638998999938999887303555665168-84789
Q ss_pred EEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99268999999988850574322222222222222222222222
Q gi|254780916|r 85 VQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGV 128 (482)
Q Consensus 85 iiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~ 128 (482)
++|++++.+....|...||.||+.|||+.++|..++...+++..
T Consensus 79 ~lta~~~~~~~i~~l~~GaddYi~KPf~~~EL~arv~~~l~r~~ 122 (237)
T PRK11173 79 FLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 (237)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 99432577889999976976788789887999999999986641
No 39
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.87 E-value=2.7e-21 Score=170.11 Aligned_cols=118 Identities=17% Similarity=0.207 Sum_probs=110.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 838998699899999999999889889998937--999986089989999785469888999999998578983999926
Q gi|254780916|r 11 KRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQTT 88 (482)
Q Consensus 11 ~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT~ 88 (482)
.||||||||+.++..++..|+..||.|..+.++ +++.+....||+|++|++||++||+++|+++|+..+.+|||++|+
T Consensus 1 mkILlVEDd~~~~~~l~~~L~~~g~~V~~a~~~~ea~~~~~~~~~DlvilDi~lp~~~G~~l~~~ir~~~~~~pII~lt~ 80 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILAAQTEGYACDGVSTAREAEQSLESGHYSLVVLDLGLPDEDGLHFLARIRQKKYTLPVLILTA 80 (222)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEC
T ss_conf 97999928899999999999978999999899999999997489989999688899862268999983489988999821
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8999999988850574322222222222222222222222
Q gi|254780916|r 89 QDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGV 128 (482)
Q Consensus 89 ~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~ 128 (482)
+++.+....|+..||.||+.||++.++|..++...+++..
T Consensus 81 ~~~~~~~~~~l~~GAddyi~KP~~~~eL~ari~~~lrr~~ 120 (222)
T PRK10643 81 RDTLEDRIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 (222)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 0367889999975997764388768999999999970323
No 40
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.86 E-value=2.1e-21 Score=170.90 Aligned_cols=111 Identities=22% Similarity=0.293 Sum_probs=104.8
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 998699899999999999889889998937--999986089989999785469888999999998578983999926899
Q gi|254780916|r 14 LIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQTTQDN 91 (482)
Q Consensus 14 LIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT~~~~ 91 (482)
|||||++.++..++..|+..||+|.++.++ +++.+.+.+||+|++|+.||+|||+++++++|+..|.+|||++||+++
T Consensus 1 LvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~~dlvi~D~~mP~~~G~el~~~ir~~~~~~pvI~lT~~~~ 80 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEKPDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAHGD 80 (113)
T ss_pred CEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 98927299999999999988999999899999999987579999997799989872699999998589995999978789
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999998885057432222222222222222222
Q gi|254780916|r 92 IKILNCFLYNRISKFFLNLVSRKQLCDSIICAL 124 (482)
Q Consensus 92 ~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al 124 (482)
.+.+.+++..|+.+|+.||++.++|..++.+.+
T Consensus 81 ~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~l 113 (113)
T cd00156 81 DEDAVEALKAGADDYLTKPFSPEELLARIRALL 113 (113)
T ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHC
T ss_conf 999999997689789969899999999999869
No 41
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.86 E-value=8.5e-22 Score=173.67 Aligned_cols=117 Identities=17% Similarity=0.291 Sum_probs=107.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8838998699899999999999889889998937--99998608998999978546988899999999857898399992
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQT 87 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT 87 (482)
+.||||||||+.++..++..|+..||+|..|.++ +++.+. .+||+|++|++||++||+++|+++|+. +++|||++|
T Consensus 1 M~kILlVEDd~~l~~~l~~~L~~~G~~V~~a~~g~~al~~l~-~~~DlvilDi~LP~~dG~~l~~~iR~~-~~~PII~lt 78 (232)
T PRK10955 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDTLKALRQT-HQTPVIMLT 78 (232)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCEEECC-CCCCEEEEE
T ss_conf 988999969899999999999888999999899999999964-898999991899988867230124407-888789980
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68999999988850574322222222222222222222222
Q gi|254780916|r 88 TQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGV 128 (482)
Q Consensus 88 ~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~ 128 (482)
+.++.+..+.|+..||.||+.|||++++|.+++...+++..
T Consensus 79 a~~~~~d~i~~l~~GADDYl~KPf~~~eL~ari~allrR~~ 119 (232)
T PRK10955 79 ARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 (232)
T ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 55676889999976975763389998999999999976154
No 42
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.86 E-value=2.3e-21 Score=170.65 Aligned_cols=120 Identities=15% Similarity=0.186 Sum_probs=111.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 52883899869989999999999988988999893--7999986089989999785469888999999998578983999
Q gi|254780916|r 8 DRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIV 85 (482)
Q Consensus 8 ~~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIi 85 (482)
++..||||||||+.++..++..|+..||+|.+|.+ ++++.+....||+|++|+.||++||+++++++|+. +.+|||+
T Consensus 8 ~~~~kILlVEDd~~l~~~l~~~L~~~g~~V~~a~~~~eal~~~~~~~~DliilDi~lp~~~Gl~l~~~lr~~-~~~piI~ 86 (240)
T PRK10710 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDEVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRF-SDIPIVM 86 (240)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHCC-CCCCEEE
T ss_conf 998879999298999999999999889999998999999999973799899987999888776321122115-7646899
Q ss_pred EECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9268999999988850574322222222222222222222222
Q gi|254780916|r 86 QTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGV 128 (482)
Q Consensus 86 iT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~ 128 (482)
+|++++.+....|...||.||+.|||+.++|+.++...+++..
T Consensus 87 lta~~~~~~~~~al~~GAddYl~KPf~~~eLlari~~~lrr~~ 129 (240)
T PRK10710 87 VTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 (240)
T ss_pred ECCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 8167888999999986998760077653899999999984523
No 43
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.86 E-value=1.7e-21 Score=171.62 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=109.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8838998699899999999999889889998937--99998608998999978546988899999999857898399992
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQT 87 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT 87 (482)
++||||||||+.++..++..|+..||+|..|.++ ++..+.+..||+|++|+.||++||+++|+++|+.. ++|||++|
T Consensus 2 ~~kILlVEDD~~l~~~l~~~L~~~g~~V~~~~~~~~a~~~l~~~~~DlvilDi~lp~~~G~el~~~iR~~~-~~piI~lt 80 (224)
T PRK10766 2 SYHILVVEDEPVTRARLQGYFEQEGYRVSEAASGAGMREIMQNQHVDLILLDINLPGEDGLMLTRELRSRS-TVGIILVT 80 (224)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHCC-CCCEEEEC
T ss_conf 97199991999999999999998799999989999999999608999999889999887661376763047-85568633
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 689999999888505743222222222222222222222222
Q gi|254780916|r 88 TQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVV 129 (482)
Q Consensus 88 ~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~ 129 (482)
++++.+....|...||.||+.|||+..+|+.++...+++...
T Consensus 81 a~~~~~~~i~al~~GaddYl~KPf~~~eL~ari~allrR~~~ 122 (224)
T PRK10766 81 GRTDSIDRIVGLEMGADDYVTKPFELRELLVRVKNLLWRISL 122 (224)
T ss_pred CCCCHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 558989999999849414513999889999999999725244
No 44
>PRK13557 histidine kinase; Provisional
Probab=99.86 E-value=6.1e-21 Score=167.61 Aligned_cols=118 Identities=14% Similarity=0.235 Sum_probs=107.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCC-CCCEEEEECCCC-CCCHHHHHHHHHHHCCCCCEE
Q ss_conf 28838998699899999999999889889998937--99998608-998999978546-988899999999857898399
Q gi|254780916|r 9 RHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKI-QVNVIFLSLINC-EDDKENILKNIVDKIPIVPII 84 (482)
Q Consensus 9 ~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~-~~dlillD~~mP-~~dGlell~~i~~~~p~ipvI 84 (482)
...+||||||++.++.+++.+|+..||+|.+|.++ |++.+.+. +||+||+|+.|| +|||+++++++|+..|.+|||
T Consensus 412 ~~~~ILvVDD~~~~r~~~~~~L~~~G~~v~~a~~G~eAl~~l~~~~~~Dlvl~D~~MPg~mdG~el~r~ir~~~p~i~ii 491 (538)
T PRK13557 412 GTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILESHPEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVL 491 (538)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 87258996798999999999999769999998999999999960999889988777999988999999998538998399
Q ss_pred EEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 992689999999888505743222222222222222222222
Q gi|254780916|r 85 VQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALRE 126 (482)
Q Consensus 85 iiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~ 126 (482)
++|||.........+..|.++|+.|||+..+|...|..++..
T Consensus 492 ~~Tg~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 533 (538)
T PRK13557 492 LTTGYAEASIERTDVGGSEFDIVNKPYRRAELARRVRMVLDG 533 (538)
T ss_pred EEECCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHCC
T ss_conf 997998778899775289988881989999999999998678
No 45
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.86 E-value=2.8e-21 Score=170.02 Aligned_cols=117 Identities=12% Similarity=0.138 Sum_probs=110.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 838998699899999999999889889998937--999986089989999785469888999999998578983999926
Q gi|254780916|r 11 KRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQTT 88 (482)
Q Consensus 11 ~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT~ 88 (482)
.||||||||+.++..+...|+..||+|..|.++ +++.+.+..||+|++|+.||++||+++++++|+..+.+|||++|+
T Consensus 1 mkILivEdd~~~~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~~~dlvilD~~lp~~~G~~l~~~ir~~~~~~piI~lta 80 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTA 80 (223)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHCCCCCCCEEEEEC
T ss_conf 98999959899999999999978999999899999999997579989999799989886400120110489876899944
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899999998885057432222222222222222222222
Q gi|254780916|r 89 QDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREG 127 (482)
Q Consensus 89 ~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~ 127 (482)
+++.+...+|+..|+.||+.||++.++|..++...+++.
T Consensus 81 ~~~~~~~~~al~~Gaddyl~KP~~~~eL~arv~~~lrr~ 119 (223)
T PRK10816 81 RESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 456778999998699886418977789999999996655
No 46
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.86 E-value=7.9e-21 Score=166.85 Aligned_cols=118 Identities=21% Similarity=0.279 Sum_probs=108.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH-CCCCCEEEEE
Q ss_conf 838998699899999999999889889998937--9999860899899997854698889999999985-7898399992
Q gi|254780916|r 11 KRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDK-IPIVPIIVQT 87 (482)
Q Consensus 11 ~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~-~p~ipvIiiT 87 (482)
.+|||||||+.++..++.+|+..||+|..+.++ +++.+... ||+|++|++||++||+++|+++|+. ...+|||++|
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~G~~v~~~~~~~~a~~~~~~~-~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~Lt 79 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ-PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIVLT 79 (229)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC-CCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 9899991888999999999987597899978989999997269-999999889998568999999985168999889996
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 689999999888505743222222222222222222222222
Q gi|254780916|r 88 TQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVV 129 (482)
Q Consensus 88 ~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~ 129 (482)
+.++.+..+.++..||.||+.|||++.+|++++...+|+...
T Consensus 80 a~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~ 121 (229)
T COG0745 80 ARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG 121 (229)
T ss_pred CCCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 687288899999756342334889989999999999673656
No 47
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.85 E-value=2.9e-21 Score=169.91 Aligned_cols=126 Identities=16% Similarity=0.187 Sum_probs=113.4
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCHH--HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 35288389986998999999999998898899989379--9998608998999978546988899999999857898399
Q gi|254780916|r 7 LDRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSD--LSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPII 84 (482)
Q Consensus 7 m~~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~a--l~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvI 84 (482)
|....-|-|||||..+|..+..+|+..||+|.+..+++ ++......|.++++|++||+++|+++...+.+..+.+|||
T Consensus 1 ~~~~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVI 80 (202)
T COG4566 1 MPREPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVI 80 (202)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEE
T ss_conf 99887689976848899999999983895366504799998306678897699855788885089999999539998879
Q ss_pred EEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 992689999999888505743222222222222222222222222222
Q gi|254780916|r 85 VQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVVPSQ 132 (482)
Q Consensus 85 iiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~~~~ 132 (482)
++|||+|+.+++++++.||.||+.|||+...|++++.+|++.......
T Consensus 81 fiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~~ 128 (202)
T COG4566 81 FLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASRRA 128 (202)
T ss_pred EEECCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 982788728999999742156774788548999999999998888887
No 48
>TIGR01387 cztR_silR_copR heavy metal response regulator; InterPro: IPR006291 Members of this family contain a response regulator receiver domain and an associated transcriptional regulatory region. This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members are encoded by genes adjacent to genes which code for a member of the heavy metal sensor histidine kinase family (IPR006290 from INTERPRO), its partner in the two-component response regulator system. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0007600 sensory perception.
Probab=99.85 E-value=3.5e-22 Score=176.44 Aligned_cols=129 Identities=16% Similarity=0.196 Sum_probs=116.9
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 8998699899999999999889889998937--99998608998999978546988899999999857898399992689
Q gi|254780916|r 13 VLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQTTQD 90 (482)
Q Consensus 13 ILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT~~~ 90 (482)
|||||||+.-.+.+++-|...||.|-+++++ ++.+..+.+||+||||+|+|+|||.++++.+|+.....||+++||.+
T Consensus 1 iLvvEDeqkT~~YlqqGLsE~GYvvD~~~nG~DGL~lA~~~~Y~liILDvmLPG~DGW~vl~~LR~~~~~~PVl~LTA~D 80 (219)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDIASNGRDGLHLAEKDDYDLIILDVMLPGMDGWQVLKALRRSGKETPVLFLTARD 80 (219)
T ss_pred CEEEECCCCHHHHHHCCCCCCCEEEEEEECCCCHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 96763086026765305201234798877686247543688830899632588950689999984078987348883378
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999998885057432222222222222222222222222222211111111
Q gi|254780916|r 91 NIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVVPSQENEHCALDSL 142 (482)
Q Consensus 91 ~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~~~~~~~~~~~~~L 142 (482)
++..-++|+..||.|||+|||+..+|+++|...+|++....+. +.....+|
T Consensus 81 ~v~DkvkGLd~GAdDYLvKPF~F~ELlARvR~~LR~~~~~~~~-evl~i~DL 131 (219)
T TIGR01387 81 SVADKVKGLDLGADDYLVKPFEFAELLARVRTLLRRSESLEST-EVLEIADL 131 (219)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CEEEECCC
T ss_conf 8454353011478654137877603799999876775203767-62686055
No 49
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.85 E-value=1.2e-20 Score=165.65 Aligned_cols=118 Identities=23% Similarity=0.215 Sum_probs=106.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8838998699899999999999889889998937--99998608998999978546988899999999857898399992
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQT 87 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT 87 (482)
++||||||||+.++..+...|+..||+|..+.++ +++.+....||+|++|++||++||+++|+++++.. .+|+|++|
T Consensus 1 M~~ILlVEDD~~l~~~l~~~L~~~g~~v~~a~~~~~~~~~l~~~~~DlvIlDi~lp~~~Gl~~~~~ir~~~-~~piiilt 79 (241)
T PRK13856 1 MKHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLSSETVDVVVVDLNLGREDGLEIVRSLATKS-DVPIIIIS 79 (241)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCC-CCCEEEEE
T ss_conf 99899996989999999999987799999989999999998659999999969998766134555640369-97369997
Q ss_pred C-CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6-8999999988850574322222222222222222222222
Q gi|254780916|r 88 T-QDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGV 128 (482)
Q Consensus 88 ~-~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~ 128 (482)
+ ..+......|...||.||+.|||++++|+.++...+++..
T Consensus 80 ~~~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~~~lrr~~ 121 (241)
T PRK13856 80 GDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVRP 121 (241)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 267878999999876998899777677799999999987454
No 50
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.85 E-value=6.4e-21 Score=167.46 Aligned_cols=117 Identities=16% Similarity=0.253 Sum_probs=106.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHH--HCCCEEE-EECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 8838998699899999999999--8898899-9893--799998608998999978546988899999999857898399
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVE--SYGYDVF-IVNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPII 84 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~--~~G~~v~-~a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvI 84 (482)
+.+|||||||+.+|+-|..++. ..|++|. +|.+ +|++.+.+.+||+|++|+.||+|||+++++.+++..|++-+|
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~pDiviTDI~MP~mdGLdLI~~ike~~p~~~~I 80 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQPDIVITDINMPGMDGLDLIKAIKEQSPDTEFI 80 (475)
T ss_pred CEEEEEECCHHHHHHHHHHHCCHHHCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 91399966729999999984885636975787514579999998734997899815788875799999999749985399
Q ss_pred EEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 992689999999888505743222222222222222222222
Q gi|254780916|r 85 VQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALRE 126 (482)
Q Consensus 85 iiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~ 126 (482)
|+||+++.+.+..|++.|+.||+.||++..+|...+.+....
T Consensus 81 ILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~k 122 (475)
T COG4753 81 ILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGK 122 (475)
T ss_pred EEECCCHHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHHH
T ss_conf 984642058999998618521220769899999999999999
No 51
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.85 E-value=2.2e-20 Score=163.74 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=107.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 28838998699899999999999889889998937--9999860899899997854698889999999985789839999
Q gi|254780916|r 9 RHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQ 86 (482)
Q Consensus 9 ~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIii 86 (482)
...+||||||++..+.+++..|+..||+|.+|.++ |++.+.+.+||+||+|++||.|||+++.++||+....+|||.+
T Consensus 823 ~~lrILVVEDNpINq~VL~~~L~~LG~~V~~A~NG~EALe~l~~~~fDLILMDIqMPvMDGyEaTr~IRe~~~~iPIIAL 902 (947)
T PRK10841 823 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGV 902 (947)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEE
T ss_conf 89889999078999999999999769999998999999999756998989970888998099999999808984949999
Q ss_pred ECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 26899999998885057432222222222222222222
Q gi|254780916|r 87 TTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICAL 124 (482)
Q Consensus 87 T~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al 124 (482)
||+...+...++...|..+|+.||++.+.|.+.+..-.
T Consensus 903 TAnA~~edkerCleAGMDdyLsKPV~l~~L~~vL~~Y~ 940 (947)
T PRK10841 903 TANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYA 940 (947)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 38999899999998799999979897999999999998
No 52
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.84 E-value=5.2e-20 Score=161.05 Aligned_cols=115 Identities=14% Similarity=0.141 Sum_probs=105.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH--CCCCCEEE
Q ss_conf 8838998699899999999999889889998937--9999860899899997854698889999999985--78983999
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDK--IPIVPIIV 85 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~--~p~ipvIi 85 (482)
+.|||+|||++..+.++..+|++.|++|.+|.++ |++.+.+.+||+||+|++||+|||++.++.||+. ..++|||.
T Consensus 668 ~lrVLvVEDN~iN~~vi~~lL~~lG~~v~~A~nG~eAle~~~~~~fDLILMDiqMP~MDG~eATr~IR~~~~~~~~PIIA 747 (920)
T PRK11107 668 PLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVELAKQRPFDLIFMDIQMPGMDGIRACELIRQLPHNQNTPIIA 747 (920)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEE
T ss_conf 77499984889999999999998498899989999999997479997899889999998999999998186789895999
Q ss_pred EECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 926899999998885057432222222222222222222
Q gi|254780916|r 86 QTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICAL 124 (482)
Q Consensus 86 iT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al 124 (482)
+||+...+...+++..|..||+.||++...|...+.+-.
T Consensus 748 lTA~a~~~dre~cl~aGMddyLtKPI~~~~L~~~L~~~~ 786 (920)
T PRK11107 748 VTAHAMAGERERLLGAGMDDYLAKPIDEAALKQVLLRWK 786 (920)
T ss_pred EECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHC
T ss_conf 979989899999997799938728799999999999867
No 53
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.84 E-value=5.8e-20 Score=160.74 Aligned_cols=116 Identities=15% Similarity=0.143 Sum_probs=106.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 3528838998699899999999999889889998937--99998608998999978546988899999999857898399
Q gi|254780916|r 7 LDRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPII 84 (482)
Q Consensus 7 m~~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvI 84 (482)
.....+||||||++..+.+++..|+..||+|.+|.++ |++.+.+..||+||+|++||+|||+|+.+.||+....+|||
T Consensus 955 ~~~~l~ILvVeDn~~Nr~ll~~~L~~lG~~v~~a~nG~eAl~~~~~~~fDlILmDi~MP~MDG~e~tr~IR~~~~~~PIi 1034 (1197)
T PRK09959 955 LPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLREQNSSLPIW 1034 (1197)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCEE
T ss_conf 77898799979989999999999998399999989999999997669999999879789998999999996469869489
Q ss_pred EEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99268999999988850574322222222222222222
Q gi|254780916|r 85 VQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIIC 122 (482)
Q Consensus 85 iiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~ 122 (482)
-+||+...+...++...|..||+.||+..+.|...+.+
T Consensus 1035 alTA~a~~~~~~~cl~aGMdd~L~KPi~l~~L~~~L~~ 1072 (1197)
T PRK09959 1035 GLTANAQANEREKGLNCGMNLCLFKPLTLDVLKTHLSQ 1072 (1197)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
T ss_conf 99799999999999976998345188989999999985
No 54
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.83 E-value=6.4e-19 Score=153.36 Aligned_cols=174 Identities=17% Similarity=0.202 Sum_probs=120.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHC-CCEEE-EECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 883899869989999999999988-98899-9893--7999986089989999785469888999999998578983999
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESY-GYDVF-IVNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIV 85 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~-G~~v~-~a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIi 85 (482)
+.|||||||++.+|..++.+|+.. ||+|. +|.+ ++++.+.+.+||+|++|+.||+|||++++++|++.+| +||||
T Consensus 2 kirVLIVDDs~~~R~~l~~~L~~~~~~eVv~~A~nG~eAl~~~~~~~pDvVllDi~MP~mdGie~l~~I~~~~p-~pVim 80 (345)
T PRK00742 2 KIRVLVVDDSAFMRRLLSEILNSDPDIEVVGTARDGLEAVEKIKKLNPDVITLDVEMPVMDGIEALRKIMALRP-TPVVM 80 (345)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCC-CCEEE
T ss_conf 82699992988999999999972899089999899999999988609999998378899987999999997589-87799
Q ss_pred EECC--CCHHHHHHHHHCCCCCCCCCCCCC-----CC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9268--999999988850574322222222-----22----222222222222222222211111111222222222222
Q gi|254780916|r 86 QTTQ--DNIKILNCFLYNRISKFFLNLVSR-----KQ----LCDSIICALREGVVPSQENEHCALDSLIAVSPAMIQVVD 154 (482)
Q Consensus 86 iT~~--~~~~~~~~a~~~g~~d~l~KP~~~-----~~----L~~~i~~al~~~~~~~~~~~~~~~~~LiG~S~~m~~v~~ 154 (482)
+|+. .+.+.+.+|+..||.||+.||... ++ |+..+..+-+....... ... ++. ..
T Consensus 81 vSs~~~~~~~~~~~Al~~GA~D~i~KP~~~~~~~~~~~~~~L~~ki~~~~~~~~~~~~-~~~---------~~~----~~ 146 (345)
T PRK00742 81 VSSLTERGAEITLEALELGAVDFVPKPFLGISEGMDAAAELLAEKVRAAARAARLAAA-APA---------AAP----AA 146 (345)
T ss_pred EEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC-CCC---------CCC----CC
T ss_conf 9722555659999999759224895788876532999999999999998518655678-888---------888----88
Q ss_pred CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 22223443204887327774367999999842675433210123
Q gi|254780916|r 155 LARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVN 198 (482)
Q Consensus 155 ~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~ 198 (482)
....-......|...|-+=-|=..+.+.+-........|++.+.
T Consensus 147 ~~~~~~~~~~~vV~IGaStGGp~aL~~il~~Lp~~~p~pivivQ 190 (345)
T PRK00742 147 LKAAPSGSSEKLVAIGASTGGPEALQKVLTQLPANFPAPIVIVQ 190 (345)
T ss_pred CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 87777788871899983756899999999858988997489996
No 55
>PRK13435 response regulator; Provisional
Probab=99.82 E-value=8.4e-20 Score=159.60 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=101.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEE-EECC--HHHHHHHCCCCCEEEEECCCCC-CCHHHHHHHHHHHCCCCCEEE
Q ss_conf 88389986998999999999998898899-9893--7999986089989999785469-888999999998578983999
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESYGYDVF-IVNV--SDLSTISKIQVNVIFLSLINCE-DDKENILKNIVDKIPIVPIIV 85 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~G~~v~-~a~~--~al~~l~~~~~dlillD~~mP~-~dGlell~~i~~~~p~ipvIi 85 (482)
+.||||||||+.++..++..|+..||+|. +|++ ++++.+++.+||+|++|++||+ ++|+++++++++. +++|||+
T Consensus 1 ~mRILIVEDe~~i~~~l~~~L~~~G~~vv~~A~~~~eAl~~~~~~~PDlvllDi~LpdG~~G~e~~r~l~~~-~~ipvI~ 79 (141)
T PRK13435 1 QLRVLIVEDEALIALELEKLLEEAGHQVVGIASTSEQALALGRRAQPDVALVDIRLADGPTGVEVARRLSID-GGVEVIF 79 (141)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHC-CCCCEEE
T ss_conf 978999899899999999999987997999759999999997659998999788789999899999999875-9983899
Q ss_pred EECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 926899999998885057432222222222222222222222222
Q gi|254780916|r 86 QTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVVP 130 (482)
Q Consensus 86 iT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~~ 130 (482)
+||+.+. ..++..|+.||+.|||++++|.+++.++++++...
T Consensus 80 lTa~~d~---~~~~~aGA~dyl~KPf~~~eL~~ai~~~~~rr~~~ 121 (141)
T PRK13435 80 MTANPER---VGHDFAGALGVIAKPYSLRQVARALSYVAARRVDD 121 (141)
T ss_pred EECCHHH---HHHHHCCCCCEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9777998---60134599858989999899999999999715689
No 56
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.82 E-value=3.1e-19 Score=155.59 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=106.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 28838998699899999999999889889998937--99998608-9989999785469888999999998578983999
Q gi|254780916|r 9 RHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKI-QVNVIFLSLINCEDDKENILKNIVDKIPIVPIIV 85 (482)
Q Consensus 9 ~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~-~~dlillD~~mP~~dGlell~~i~~~~p~ipvIi 85 (482)
...|||||||++..+.+++.+|+..||+|.+|.++ |++.+.+. +||+|++|+.||+|||+++.++||+..|.+|||.
T Consensus 680 ~~lrVLvVEDn~~N~~v~~~~L~~lG~~v~~A~nG~eAle~l~~~~~fDlVLmDi~MP~mDG~eatr~iR~~~~~~pIIA 759 (912)
T PRK11466 680 DGLRLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLAQQYPSLVLIG 759 (912)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf 88869999487889999999999869989998999999999971899858987699999989999999986199997899
Q ss_pred EECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9268999999988850574322222222222222222222
Q gi|254780916|r 86 QTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALR 125 (482)
Q Consensus 86 iT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~ 125 (482)
+||+...+....+...|..+|+.||++++.|...+.+.+.
T Consensus 760 lTA~a~~ed~~~~l~aGmd~~L~KPv~~~~L~~~l~~~l~ 799 (912)
T PRK11466 760 FSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQ 799 (912)
T ss_pred ECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHC
T ss_conf 7798788999999976998775498999999999999846
No 57
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.81 E-value=9e-20 Score=159.37 Aligned_cols=242 Identities=22% Similarity=0.285 Sum_probs=177.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH------CCCCCC-CCCC
Q ss_conf 222222222222111111112222222222222222344320488732777436799999984------267543-3210
Q gi|254780916|r 123 ALREGVVPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHE------SGKRAF-FPFF 195 (482)
Q Consensus 123 al~~~~~~~~~~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~------~s~r~~-~~fi 195 (482)
+++-....++...-.+|+.+||+..-++.+...+| .-..++|.|+|++|+||+..||..=+ .|++++ ..||
T Consensus 48 ~I~Lt~PL~Ek~RP~SF~EIiGQe~GI~ALKAALC--GPNPQHVIiYGPPGVGKTAAARLVLeeAKk~~~SPFke~A~FV 125 (532)
T TIGR02902 48 AIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALC--GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEEAAFV 125 (532)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC--CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 34167887746677763325673556899998606--8689638987886961789999999986508753789886689
Q ss_pred CCCCCCC--CCCCCHHHHHCCC-C-CCCCC--------CCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 1234655--4210024331125-5-55322--------111001234466714751664200188999888877642001
Q gi|254780916|r 196 IVNCGMI--DQDKIEKFLFGDV-D-LQTKN--------SAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIE 263 (482)
Q Consensus 196 ~v~c~~~--~~~~~e~~lFG~~-~-~~~~~--------~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~ 263 (482)
.||..++ |+-=.-.=|.|.+ | -+.|| ..-+.|..-+||||.||||||++|.|-.=.|||.+|||+++.
T Consensus 126 EiDATT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AHGGvLFIDEIGELHP~~MNKLLKVLEDRKVF 205 (532)
T TIGR02902 126 EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVF 205 (532)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCH
T ss_conf 85051036021466665677615853337654578855758777632025865512124665824353141133022200
Q ss_pred C-----CCCCCC------------CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q ss_conf 1-----235532------------1234315652143321111112333799988654334467787744222--25566
Q gi|254780916|r 264 F-----FDSRGA------------IRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDI--PWLVH 324 (482)
Q Consensus 264 ~-----~g~~~~------------~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI--~~L~~ 324 (482)
- .-++.. .+.|||+|-||++++++.- |.||-|.=.| ..|-.
T Consensus 206 LdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~PeEIp--------------------PAlRSRC~EIFFR~L~~ 265 (532)
T TIGR02902 206 LDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPEEIP--------------------PALRSRCVEIFFRPLLK 265 (532)
T ss_pred HHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCC--------------------HHHHCCCEEEEECCCCH
T ss_conf 0012358777865427899720678734012133369877678--------------------34650522677168887
Q ss_pred HHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH---HHCCCCCCCHHHHHHHHCC
Q ss_conf 7776410112233-33211111000122338986899999999998---7438981068895454212
Q gi|254780916|r 325 FFLQSFCTKNAIK-QISISDKALSLLTKYPWIDNVQELKNILLRAV---IGLKDSHLTEDRFVLLLSR 388 (482)
Q Consensus 325 ~fl~~~~~~~~~~-~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~---i~~~~~~i~~~~~~~~l~~ 388 (482)
.-+++.|++.-.+ -..++++|++++..|.- |=||=-|+|+-|+ +....+.|...|+.-....
T Consensus 266 EEi~~iAk~AaeKIg~~l~~~Al~~I~~Ya~--nGREAvN~~QLAaG~a~~E~Rk~I~~~DieWV~~~ 331 (532)
T TIGR02902 266 EEIKEIAKNAAEKIGLNLEKEALDLIAKYAS--NGREAVNLVQLAAGIALGENRKRILAEDIEWVIES 331 (532)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC--CCCHHHHHHHHHHHHEECCCCCEECHHHHHHHHHH
T ss_conf 8999998765653046547547999998740--54067789999731401288761205464455530
No 58
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.80 E-value=1.1e-18 Score=151.55 Aligned_cols=116 Identities=11% Similarity=0.154 Sum_probs=102.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCC---CCCE
Q ss_conf 28838998699899999999999889889998937--999986089989999785469888999999998578---9839
Q gi|254780916|r 9 RHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIP---IVPI 83 (482)
Q Consensus 9 ~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p---~ipv 83 (482)
...|||||||++..+.+++.+|+..||+|.+|.++ |++.+.+.+||+||+|++||+|||+++.+.||+..+ .+||
T Consensus 524 ~~lrILvVEDn~iN~~V~~~~L~~lG~~v~~A~nG~eALe~~~~~~fDLILMDiqMP~MDG~Eatr~IR~~~~~~~~~PI 603 (779)
T PRK11091 524 PALNILLVEDIELNVIVARSLLEKLGNSVDVAMTGKDALEMFKPGEYDLVLLDIQLPDMTGLDVARELRERYGREDLPPL 603 (779)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCE
T ss_conf 88818998688999999999999759999998999999998506999989982899999789999999842576899927
Q ss_pred EEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999268999999988850574322222222222222222222
Q gi|254780916|r 84 IVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALR 125 (482)
Q Consensus 84 IiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~ 125 (482)
|.+||+.- +...++...|..||+.||++...|...+.+...
T Consensus 604 IALTAna~-~d~~~~l~aGMdd~L~KPi~~~~L~~~l~~~~~ 644 (779)
T PRK11091 604 VALTANVL-KDKQEYLDAGMDDVLSKPLSVPALTAMIKKFWD 644 (779)
T ss_pred EEEECCCC-HHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHC
T ss_conf 98818741-769999976998475188989999999999846
No 59
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.79 E-value=6.5e-18 Score=146.22 Aligned_cols=163 Identities=15% Similarity=0.105 Sum_probs=115.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHC-CCEEE-EECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 883899869989999999999988-98899-9893--7999986089989999785469888999999998578983999
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESY-GYDVF-IVNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIV 85 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~-G~~v~-~a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIi 85 (482)
+.|||||||++.+|..++.+|+.. |++|. +|.+ ++++.+.+.+||+|++|+.||+|||++++++|++..| +||||
T Consensus 1 PirVLIVDDs~~~R~~l~~~L~~~~~~eVv~~A~~g~eAl~~~~~~~pDvVllDi~MP~mdGie~l~~I~~~~p-~PVim 79 (340)
T PRK12555 1 PMNVGIVDDSALAREALRRIIARRPDHRVLGVATDGLQARDLCKAQPPDVVLLDLEMPRMDGLTFLRRIMRRRP-CPVLI 79 (340)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCC-CCEEE
T ss_conf 98899990988999999999960999489999899999999988619999997278899987999999998789-98699
Q ss_pred EECC--CCHHHHHHHHHCCCCCCCCCCCCC-----CC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9268--999999988850574322222222-----22----222222222222222222211111111222222222222
Q gi|254780916|r 86 QTTQ--DNIKILNCFLYNRISKFFLNLVSR-----KQ----LCDSIICALREGVVPSQENEHCALDSLIAVSPAMIQVVD 154 (482)
Q Consensus 86 iT~~--~~~~~~~~a~~~g~~d~l~KP~~~-----~~----L~~~i~~al~~~~~~~~~~~~~~~~~LiG~S~~m~~v~~ 154 (482)
+|+. .+.+...+++..||.||+.||-.. +. |+..+..+-+.. ......... ..+.
T Consensus 80 vSs~~~~~~~~~~~AL~~GA~D~i~KP~~~~~~~~~~~~~~L~~ki~~~~~~~-~~~~~~~~~-------~~~~------ 145 (340)
T PRK12555 80 VSSLTEAGASITYEALGAGALDAVDKPKLGIGRGLDAYAQELLAKIDQAARAL-VRRLARAAA-------PAPA------ 145 (340)
T ss_pred EEECCCCCHHHHHHHHHCCHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCCCCCC-------CCCC------
T ss_conf 85035657699999997797766847887755319999999999999986442-456788888-------8899------
Q ss_pred CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 2222344320488732777436799999984267
Q gi|254780916|r 155 LARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGK 188 (482)
Q Consensus 155 ~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~ 188 (482)
..........|...|-+--|=..+.+.+-....
T Consensus 146 -~~~~~~~~~~vv~IGaSTGGp~aL~~il~~LP~ 178 (340)
T PRK12555 146 -APAPFRTTEKLVAIGASAGGTEALAALLRGLPA 178 (340)
T ss_pred -CCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCC
T ss_conf -876557888789999688999999999986786
No 60
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=99.77 E-value=7.2e-19 Score=152.97 Aligned_cols=192 Identities=26% Similarity=0.366 Sum_probs=141.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEEEECCCCCHHHHHHHHHHHCCCCC-------CCCCCCCCCCCCCCC-
Q ss_conf 11111111222222222222222234-432048873277743679999998426754-------332101234655421-
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAG-DCAIPIMIQGEFGVGKKRLSRFIHESGKRA-------FFPFFIVNCGMIDQD- 205 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a-~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~-------~~~fi~v~c~~~~~~- 205 (482)
....|+.+||+.-+++.+.. ++| ...++|++.|++|+||+++||..=+..++. +.|||.||.++|-=|
T Consensus 150 RP~~f~EiVGQerAI~aLla---K~aSPfPQHiiLYGPPGVGKTTaARl~LEe~K~~~~tPF~~DA~FvEVDGtTLRWDP 226 (616)
T TIGR02903 150 RPRAFSEIVGQERAIKALLA---KLASPFPQHIILYGPPGVGKTTAARLALEEAKKLKNTPFAEDAPFVEVDGTTLRWDP 226 (616)
T ss_pred CCCCCCCCCCHHHHHHHHHH---HHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 87667643334689999997---631888660785573388478999998762136874476113785751576266774
Q ss_pred -CCHHHHHCCC-C----------CCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCC-------C
Q ss_conf -0024331125-5----------5532211100123446671475166420018899988887764200112-------3
Q gi|254780916|r 206 -KIEKFLFGDV-D----------LQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFF-------D 266 (482)
Q Consensus 206 -~~e~~lFG~~-~----------~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~-------g 266 (482)
-+-.=|.|.. + +.+|-..-+.|+.-.||||.||+|||++|.+-+|.|||.+|++++++.- +
T Consensus 227 REvTNPLLGSVHDPIYQGa~RDLAE~GvPEPk~GLVT~AHGGvLFIDEIGELD~lLQnKLLKVLEDKrV~F~SsYYDpdD 306 (616)
T TIGR02903 227 REVTNPLLGSVHDPIYQGARRDLAETGVPEPKLGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDD 306 (616)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 10147767762576556764011047879898987100477567650211222787632444322643665321248753
Q ss_pred CCCC----------CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Q ss_conf 5532----------123431565214332111111233379998865433446778774----------42222556677
Q gi|254780916|r 267 SRGA----------IRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSR----------SEDIPWLVHFF 326 (482)
Q Consensus 267 ~~~~----------~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR----------~eDI~~L~~~f 326 (482)
.|-| =+.||=+|-||++++++ |+ |.||-| ++||..+
T Consensus 307 ~NvPkYIK~lFe~GAPADFvLIGATTr~P~e-------------------IN-pALRSRCaEvfFePL~p~dI~~I---- 362 (616)
T TIGR02903 307 ENVPKYIKKLFEEGAPADFVLIGATTRDPEE-------------------IN-PALRSRCAEVFFEPLTPEDIKEI---- 362 (616)
T ss_pred CCCCHHHHHHHCCCCCCCEEEECCCCCCHHH-------------------CC-HHHHCCCCEEECCCCCHHHHHHH----
T ss_conf 7865588885226888256872661588244-------------------05-12330143132179887899999----
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 764101122333321111100012233898
Q gi|254780916|r 327 LQSFCTKNAIKQISISDKALSLLTKYPWID 356 (482)
Q Consensus 327 l~~~~~~~~~~~~~ls~~a~~~L~~y~WPG 356 (482)
+.+++++.|. .+.++.-++...|-=-|
T Consensus 363 v~~AA~klnv---~L~~gV~e~Ia~YTieG 389 (616)
T TIGR02903 363 VLNAAEKLNV---KLAEGVEELIARYTIEG 389 (616)
T ss_pred HHHHHHHCCC---CCCCCHHHHHHHCCCCC
T ss_conf 9998886177---00036487872147131
No 61
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.77 E-value=3.9e-18 Score=147.76 Aligned_cols=124 Identities=19% Similarity=0.306 Sum_probs=109.5
Q ss_pred CCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 9486643528838998699899999999999889889998937--99998608998999978546988899999999857
Q gi|254780916|r 1 MPRKKSLDRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKI 78 (482)
Q Consensus 1 ~p~~~~m~~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~ 78 (482)
|+.+..-.++.+||+|||++..+..++..|+..||+|.++.++ +++.....++|+|++|++||+|||.++|.+++...
T Consensus 5 ~~~~~~~~~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~~dlvllD~~mp~mdg~ev~~~lk~~~ 84 (360)
T COG3437 5 MQGKNEPDEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEPPDLVLLDVRMPEMDGAEVLNKLKAMS 84 (360)
T ss_pred CCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCC
T ss_conf 68888874201488965866689999999974264146414750778875116885677642577765999999987249
Q ss_pred C---CCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8---983999926899999998885057432222222222222222222
Q gi|254780916|r 79 P---IVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICAL 124 (482)
Q Consensus 79 p---~ipvIiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al 124 (482)
| .+|||++|++++.+..+++...|+.+|+.||+++..|..++..-+
T Consensus 85 p~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~ 133 (360)
T COG3437 85 PSTRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHL 133 (360)
T ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 7656532599860587699999997247777528898899999999999
No 62
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.76 E-value=4.5e-18 Score=147.36 Aligned_cols=116 Identities=16% Similarity=0.249 Sum_probs=105.1
Q ss_pred CEEEECCCHHHHHHHHHHHHHC-CCEEEE-ECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 3899869989999999999988-988999-893--799998608998999978546988899999999857898399992
Q gi|254780916|r 12 RVLIIDKDDEQIKIIKDHVESY-GYDVFI-VNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQT 87 (482)
Q Consensus 12 rILIVDDd~~~~~~l~~~L~~~-G~~v~~-a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT 87 (482)
+|||||||+.+.++.+.+++.. ||++.. |++ +|+..+....||+||+|+.||+.+|++++.++++.+..+-||++|
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI~iT 81 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFKPDLILLDIYMPDGNGIELLPELRSQHYPVDVIVIT 81 (224)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEE
T ss_conf 28997086589999999997389953898606499999999840899799960267985077999998468997889995
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6899999998885057432222222222222222222222
Q gi|254780916|r 88 TQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREG 127 (482)
Q Consensus 88 ~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~ 127 (482)
|-++.++...+++.|+.||+.|||..+++.+++.+-.+..
T Consensus 82 AA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r 121 (224)
T COG4565 82 AASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKR 121 (224)
T ss_pred CCCHHHHHHHHHHCCCHHHEECCEEHHHHHHHHHHHHHHH
T ss_conf 3443789999996582322056340999999999999999
No 63
>TIGR02875 spore_0_A sporulation transcription factor Spo0A; InterPro: IPR012052 Members of this group are response regulators/transcription factors that contain CheY-like receiver (phosphoacceptor) domain and a unique DNA-binding domain. Spo0A controls the entry of Bacillus subtilis into the developmental process of sporulation . Activation of the Spo0A transcription factor by phosphorylation serves as a developmental checkpoint and to integrate several physiological signals that control entry into the sporulation pathway. The signals are generated by conditions of nutrient deprivation, high cell density, the Krebs cycle, DNA replication, DNA damage, and some aspect of the chromosome partitioning machinery . Activated Spo0A has multiple functions . It represses promoters (such as the abrB promoter) by binding to sites (0A boxes) downstream from the transcription start site. Spo0A also activates transcription from promoters used by two forms of RNA polymerase that differ by containing either the major sigma factor, sigma A (e.g. the spoIIE and spoIIG promoters) or the alternate sigma factor, sigma H (e.g. the spoIIA promoter). At promoters activated by Spo0A, the 0A boxes lie upstream of the transcription-initiation site.; GO: 0003677 DNA binding, 0005509 calcium ion binding, 0000160 two-component signal transduction system (phosphorelay), 0042173 regulation of sporulation, 0045449 regulation of transcription, 0050906 detection of stimulus during sensory perception.
Probab=99.74 E-value=1.2e-17 Score=144.24 Aligned_cols=117 Identities=17% Similarity=0.168 Sum_probs=101.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHH-CCCEEEEE-CC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC--CCE
Q ss_conf 88389986998999999999998-89889998-93--79999860899899997854698889999999985789--839
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVES-YGYDVFIV-NV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPI--VPI 83 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~-~G~~v~~a-~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~--ipv 83 (482)
+-||+|+||+..+|.+|+.+|.. ..++|.-. .+ ++++++++.+||+|+||+.||.+||+-+|+++.+..-. .-|
T Consensus 2 KIri~i~DDNkEFc~lL~eY~~~Q~D~EVvG~A~nG~~a~~~I~~q~PD~vvLDIIMPhLDGiGVLEKl~~~~~~~~P~v 81 (270)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQEDMEVVGVAHNGVDALELIKEQKPDVVVLDIIMPHLDGIGVLEKLNEIELKARPRV 81 (270)
T ss_pred CEEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 62899982888999999999852898389974147689999996089989995150430005799999889887448958
Q ss_pred EEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9992689999999888505743222222222222222222222
Q gi|254780916|r 84 IVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALRE 126 (482)
Q Consensus 84 IiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~ 126 (482)
|++||.|....+++|+..||+.|+.||||.+-|..+|......
T Consensus 82 i~LsAfGQE~ITqrA~~LGADYYvlKPfDle~L~~RIRQl~~~ 124 (270)
T TIGR02875 82 IMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAEG 124 (270)
T ss_pred EEEECCCHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHCC
T ss_conf 8852237558999999728981566504178899999986246
No 64
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.73 E-value=1.9e-17 Score=142.88 Aligned_cols=120 Identities=17% Similarity=0.191 Sum_probs=106.7
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHH-CCCEEE-EECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 35288389986998999999999998-898899-9893--7999986089989999785469888999999998578983
Q gi|254780916|r 7 LDRHKRVLIIDKDDEQIKIIKDHVES-YGYDVF-IVNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVP 82 (482)
Q Consensus 7 m~~~~rILIVDDd~~~~~~l~~~L~~-~G~~v~-~a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ip 82 (482)
+.++.|||||||++.++..++.+|+. .+|+|. ++++ ++++.+.+.+||+|++|+.||+++|+++++.+++..|.++
T Consensus 3 ~~~pirIlIvDD~~l~r~gl~~~L~~~~~~~vv~~a~~~~~~~~~~~~~~pDlvllD~~lp~~~G~~~~~~l~~~~p~~~ 82 (215)
T PRK10403 3 EATPFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRLDIDVILLDLNMKGMSGLDTLNALRRDGVTAQ 82 (215)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCC
T ss_conf 89975799983989999999999975899289999899999999986449989998089989987412335654188773
Q ss_pred EEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99992689999999888505743222222222222222222222
Q gi|254780916|r 83 IIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALRE 126 (482)
Q Consensus 83 vIiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~ 126 (482)
||++|++++.+....++..|+.+|+.|+.++++|+..+......
T Consensus 83 iivlt~~~~~~~~~~al~~Ga~gyl~K~~~~~~l~~ai~~v~~G 126 (215)
T PRK10403 83 IIILTVSDASSDIFALIDAGADGYLLKDSDPEVLLEAIRAGAKG 126 (215)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 68863243236789987468766884899999999999999849
No 65
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.72 E-value=1.6e-17 Score=143.56 Aligned_cols=121 Identities=13% Similarity=0.101 Sum_probs=107.9
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHC-CCEEE-EECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 352883899869989999999999988-98899-9893--7999986089989999785469888999999998578983
Q gi|254780916|r 7 LDRHKRVLIIDKDDEQIKIIKDHVESY-GYDVF-IVNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVP 82 (482)
Q Consensus 7 m~~~~rILIVDDd~~~~~~l~~~L~~~-G~~v~-~a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ip 82 (482)
..++.|||||||++.++..++.+|+.. +++|. .+.+ ++++.+.+.+||+|++|+.||+++|+++++++++..|.++
T Consensus 3 ~~~pirVlIvDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~ea~~~~~~~~pDlvllDl~lp~~~G~~~~~~l~~~~~~~~ 82 (216)
T PRK10651 3 NQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGR 82 (216)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99997899983999999999999975899389999899999999987079999999599999888764232334578874
Q ss_pred EEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999926899999998885057432222222222222222222222
Q gi|254780916|r 83 IIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREG 127 (482)
Q Consensus 83 vIiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~ 127 (482)
||++|++++.+....++..|+.+|+.|+...++|...+..+.+..
T Consensus 83 iivlt~~~~~~~~~~al~~Ga~gyl~K~~~~~~L~~ai~~v~~g~ 127 (216)
T PRK10651 83 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE 127 (216)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 676305541889999996698789837899999999999998599
No 66
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.72 E-value=1.1e-16 Score=137.63 Aligned_cols=120 Identities=17% Similarity=0.262 Sum_probs=106.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCC--CCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 28838998699899999999999889889998937--99998608--998999978546988899999999857898399
Q gi|254780916|r 9 RHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKI--QVNVIFLSLINCEDDKENILKNIVDKIPIVPII 84 (482)
Q Consensus 9 ~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~--~~dlillD~~mP~~dGlell~~i~~~~p~ipvI 84 (482)
...+||+||||+.++.+...+|+..||+|..+.++ |++++++. .+|+|++| +||+|+|.++.+.++...|++|||
T Consensus 698 ~ge~ILvVdDe~~vr~~~~~~L~~lGY~v~~a~~~~~Al~~~~~~~~~~DLvltD-~~p~~~g~~~~~~l~~~~p~lpVi 776 (831)
T PRK13837 698 NGETVLLVEPDDALLERYEEKLAALGYEPVGFSTLSAAIAWISKDGKRFDLVLVD-QPSLGDSQLAIAALHAAAPTLPII 776 (831)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEEC-CCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 9977999859889999999999967996888689999999998389985399988-999998799999998618997499
Q ss_pred EEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9926899999998885057432222222222222222222222222
Q gi|254780916|r 85 VQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVVP 130 (482)
Q Consensus 85 iiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~~ 130 (482)
+ ||+........+...+...|+.|||+...|...+..++...+..
T Consensus 777 l-sg~~~~~~~~~~~~~~~~~fL~KPfs~~~LA~avR~aL~~~r~~ 821 (831)
T PRK13837 777 L-AGSSLKMAAREALATAIAEILPKPISSRTLAYALRTALATARAA 821 (831)
T ss_pred E-ECCCCHHHHHCHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCC
T ss_conf 9-76881443311022266706509999999999999998488887
No 67
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.71 E-value=5.7e-17 Score=139.57 Aligned_cols=116 Identities=10% Similarity=0.121 Sum_probs=104.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEE-ECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 83899869989999999999988988999-893--799998608998999978546988899999999857898399992
Q gi|254780916|r 11 KRVLIIDKDDEQIKIIKDHVESYGYDVFI-VNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQT 87 (482)
Q Consensus 11 ~rILIVDDd~~~~~~l~~~L~~~G~~v~~-a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT 87 (482)
.+||||||++.+|..++.+|+..+++|.. +.+ ++++.+...+||++++|+.||+++|+++++++++..|..+||++|
T Consensus 1 m~vlivDDh~lvr~gl~~ll~~~~~~vv~~~~~~~~~l~~~~~~~pDvvllDl~lp~~~G~~~~~~ir~~~~~~~viv~s 80 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVS 80 (204)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEE
T ss_conf 98999869899999999999868998999979999999998743979999958999998416788898727980599997
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 689999999888505743222222222222222222222
Q gi|254780916|r 88 TQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALRE 126 (482)
Q Consensus 88 ~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~ 126 (482)
++++......++..|+..|+.|....+++..++..+...
T Consensus 81 ~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~aI~~v~~G 119 (204)
T PRK09958 81 AKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 (204)
T ss_pred CCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 246521144335268637997899999999999999779
No 68
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.71 E-value=7.6e-17 Score=138.70 Aligned_cols=122 Identities=14% Similarity=0.229 Sum_probs=110.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHC--CCCCEE
Q ss_conf 28838998699899999999999889889998937--99998608998999978546988899999999857--898399
Q gi|254780916|r 9 RHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKI--PIVPII 84 (482)
Q Consensus 9 ~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~--p~ipvI 84 (482)
...+||||||+...+..+..+|+..||.|..+.++ |+..+.+.+||+|++|+.||++||+++|+.+|+.. ..+|+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ipii 210 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELPPDLVLLDANMPDMDGLELCTRLRQLERTRDIPII 210 (435)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEE
T ss_conf 67508997480779999999987536336651598999999746898589995578766789999997244444566389
Q ss_pred EEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9926899999998885057432222222222222222222222222
Q gi|254780916|r 85 VQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVVP 130 (482)
Q Consensus 85 iiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~~ 130 (482)
++|+.++.+....|...|+.||+.||++...+.+++.+.+++.+..
T Consensus 211 ~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~~ 256 (435)
T COG3706 211 LLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRYE 256 (435)
T ss_pred EEECCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9952663478999997688516734778799999999999854188
No 69
>PRK09483 response regulator; Provisional
Probab=99.70 E-value=1.5e-16 Score=136.64 Aligned_cols=118 Identities=14% Similarity=0.134 Sum_probs=106.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHC-CCEEEE-ECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 883899869989999999999988-988999-893--7999986089989999785469888999999998578983999
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESY-GYDVFI-VNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIV 85 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~-G~~v~~-a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIi 85 (482)
+.|||||||++.+|..++.+|+.. |++|.. +++ ++++.+.+.+||++++|+.||+++|+++++++++..|.++||+
T Consensus 1 Mi~VlIvDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~pDvvllDl~lp~~~Gl~~~~~i~~~~p~~~viv 80 (216)
T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMNMPGIGGLEATRKILRSTPDVKIIM 80 (216)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 95899984999999999999974899589999899999999998559999998688989875237788874089985786
Q ss_pred EECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 926899999998885057432222222222222222222222
Q gi|254780916|r 86 QTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREG 127 (482)
Q Consensus 86 iT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~ 127 (482)
+|++++.+....+++.|+.+|+.|+...++|...+..+....
T Consensus 81 ls~~~~~~~~~~al~~Ga~gyl~K~~~~~~l~~ai~~v~~G~ 122 (216)
T PRK09483 81 LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQ 122 (216)
T ss_pred ECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 305663288999997488789947999999999999998599
No 70
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.68 E-value=4.4e-16 Score=133.30 Aligned_cols=119 Identities=12% Similarity=0.114 Sum_probs=106.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHC-CCEEE-EECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 2883899869989999999999988-98899-9893--799998608998999978546988899999999857898399
Q gi|254780916|r 9 RHKRVLIIDKDDEQIKIIKDHVESY-GYDVF-IVNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPII 84 (482)
Q Consensus 9 ~~~rILIVDDd~~~~~~l~~~L~~~-G~~v~-~a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvI 84 (482)
++.|||||||++.+|..++.+|+.. +++|. .+++ ++++.+...+||+|++|+.||+++|+++++++++.+|.++||
T Consensus 2 ~p~~VlIvDDh~l~r~gl~~~l~~~~~~~vv~~a~~~~~~~~~l~~~~~DvvllD~~lp~~~g~~~i~~i~~~~p~~~il 81 (210)
T PRK09935 2 KPASVIIMDEHPIVRMSIEVLLQKNSNIQVVLKTDDSRITIDYLRTYPVDLVILDIELPGTDGFTLLKRIKQIQETVKVL 81 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCEE
T ss_conf 97889998596999999999996298928999989999999999747999999889999988640567898738997089
Q ss_pred EEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9926899999998885057432222222222222222222222
Q gi|254780916|r 85 VQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREG 127 (482)
Q Consensus 85 iiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~ 127 (482)
++|++++...+..+++.|+.+|+.|..+.++|..++..+.+..
T Consensus 82 vls~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~ai~~v~~G~ 124 (210)
T PRK09935 82 FLSSKSECFYAGRAIRAGANGFVSKRKDLNDIYNAVQMILSGY 124 (210)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 9717672999999996687768867899999999999998599
No 71
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.67 E-value=2.7e-16 Score=134.84 Aligned_cols=123 Identities=17% Similarity=0.259 Sum_probs=107.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEEECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 83899869989999999999988988999893--7999986089989999785469888999999998578983999926
Q gi|254780916|r 11 KRVLIIDKDDEQIKIIKDHVESYGYDVFIVNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQTT 88 (482)
Q Consensus 11 ~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT~ 88 (482)
.||+|||||..+...+..+|.+.|..+.+++. +++..+....||+|++|+.||+|+|+|++++++...+.+|+|++|+
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~kpDLifldI~mp~~ngiefaeQvr~i~~~v~iifIss 80 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFKPDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFISS 80 (361)
T ss_pred CCEEEECCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 92799846389999999999861102100688788999998438877999852378608789999987531486899963
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999999888505743222222222222222222222222222221
Q gi|254780916|r 89 QDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVVPSQENE 135 (482)
Q Consensus 89 ~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~~~~~~~ 135 (482)
|+ +.+..+....+.||++||+.++.|-.++.++.+.....+++..
T Consensus 81 h~--eya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ve~~~eee~ 125 (361)
T COG3947 81 HA--EYADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRVELTAEEES 125 (361)
T ss_pred CH--HHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHCC
T ss_conf 05--6523203556675416888888999999987402444410013
No 72
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.65 E-value=2.1e-15 Score=128.52 Aligned_cols=117 Identities=20% Similarity=0.217 Sum_probs=105.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCC-CEEEEE-CC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 838998699899999999999889-889998-93--79999860899899997854698889999999985789839999
Q gi|254780916|r 11 KRVLIIDKDDEQIKIIKDHVESYG-YDVFIV-NV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQ 86 (482)
Q Consensus 11 ~rILIVDDd~~~~~~l~~~L~~~G-~~v~~a-~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIii 86 (482)
.+||||||.+.++..++.+|+..+ ++|... .+ ++++.+...+||+|++|+.||+++|+++++.+++.+|+++|+++
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vvvl 80 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELKPDVVLLDLSMPGMDGLEALKQLRARGPDIKVVVL 80 (211)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 94999809777999999999868996699982788999998513799889983788998759999999986899729999
Q ss_pred ECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 26899999998885057432222222222222222222222
Q gi|254780916|r 87 TTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREG 127 (482)
Q Consensus 87 T~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~ 127 (482)
|++++.+....++..|+..|+.|..+++.+..++..+....
T Consensus 81 t~~~~~~~v~~~l~~Ga~gyl~K~~~~~~l~~ai~~v~~G~ 121 (211)
T COG2197 81 TAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGG 121 (211)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 67789899999997799699867999999999999997588
No 73
>KOG0519 consensus
Probab=99.64 E-value=2e-15 Score=128.64 Aligned_cols=117 Identities=19% Similarity=0.206 Sum_probs=103.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECC--HHHHHHH-CCCCCEEEEECCCCCCCHHHHHHHHHHHC-CCCCE
Q ss_conf 52883899869989999999999988988999893--7999986-08998999978546988899999999857-89839
Q gi|254780916|r 8 DRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNV--SDLSTIS-KIQVNVIFLSLINCEDDKENILKNIVDKI-PIVPI 83 (482)
Q Consensus 8 ~~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~--~al~~l~-~~~~dlillD~~mP~~dGlell~~i~~~~-p~ipv 83 (482)
.+..|||+|||+...+.+....|+..|.+|.++.+ +++..+. ...||+||+|+.||.|||+++.++||+.. ..+||
T Consensus 664 l~g~~iLlvddn~vn~~Va~~~l~~~g~~v~~~~sg~e~l~~~~~~~~y~~ifmD~qMP~mDG~e~~~~irk~~~~~~pI 743 (786)
T KOG0519 664 LTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKPPHSYDVIFMDLQMPEMDGYEATREIRKKERWHLPI 743 (786)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHCCEEEECCCHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCE
T ss_conf 03676578558710199999899973964574288699998638998632799975775555499999998751678877
Q ss_pred EEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99926899999998885057432222222222222222222
Q gi|254780916|r 84 IVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICAL 124 (482)
Q Consensus 84 IiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al 124 (482)
|.+||+.+..+..+++..|.+.|+.||+..+.+...+...+
T Consensus 744 vAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519 744 VALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred EEEECCCCHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHH
T ss_conf 99746875788999998287646746331899999999973
No 74
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.63 E-value=3.5e-15 Score=126.92 Aligned_cols=116 Identities=10% Similarity=0.170 Sum_probs=105.2
Q ss_pred CCCCCC-EEEECCCHHHHHHHHHHHHHCCCEEEEECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 352883-899869989999999999988988999893--79999860899899997854698889999999985789839
Q gi|254780916|r 7 LDRHKR-VLIIDKDDEQIKIIKDHVESYGYDVFIVNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPI 83 (482)
Q Consensus 7 m~~~~r-ILIVDDd~~~~~~l~~~L~~~G~~v~~a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipv 83 (482)
|..+.+ .||||||..+.+.|++.+++.||.|.++.+ +++...+...|.-.++|+.|.+++|+++++.+++..++.-+
T Consensus 5 ~~~pd~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~ri 84 (182)
T COG4567 5 MIGPDKSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERRADMRI 84 (182)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEE
T ss_conf 14887605896187699999999986068625761449999999851798528898640688746899999824976438
Q ss_pred EEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999268999999988850574322222222222222222
Q gi|254780916|r 84 IVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIIC 122 (482)
Q Consensus 84 IiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~ 122 (482)
|++|||+++-+++++++.|+.+|+.||-+.+.+...+..
T Consensus 85 vvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 85 VVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 988451179999999986245540797776899999860
No 75
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.62 E-value=5.2e-15 Score=125.73 Aligned_cols=116 Identities=22% Similarity=0.235 Sum_probs=102.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHC-CCEEEE-ECCH--HHHHHHCCCCCEEEEECCCCC---CCHHHHHHHHHHHCCCCC
Q ss_conf 883899869989999999999988-988999-8937--999986089989999785469---888999999998578983
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESY-GYDVFI-VNVS--DLSTISKIQVNVIFLSLINCE---DDKENILKNIVDKIPIVP 82 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~-G~~v~~-a~~~--al~~l~~~~~dlillD~~mP~---~dGlell~~i~~~~p~ip 82 (482)
+.||+||||.+.+|..++.+|+.. +++|.. ++++ +++.+.+.+||+|++|+.||+ +||+++++.+++.+|.++
T Consensus 3 ~irIlIvDDh~lvr~Gl~~~L~~~~~~~vvg~a~~~~~~~~~~~~~~pDvvllDl~mpg~~~~dGl~~~~~i~~~~p~~~ 82 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLS 82 (216)
T ss_pred CCEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCE
T ss_conf 88899988979999999999815999689998799999999986239898998267799988789999999998589980
Q ss_pred EEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999268999999988850574322222222222222222222
Q gi|254780916|r 83 IIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALR 125 (482)
Q Consensus 83 vIiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~ 125 (482)
||++|++++.....++++.|+..|+.|-..+.+|..++....+
T Consensus 83 vivls~~~~~~~v~~al~~Ga~Gyl~K~~~~~~L~~AI~~v~~ 125 (216)
T PRK10840 83 IIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 8998477878999999858974899878999999999999987
No 76
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.57 E-value=2.2e-14 Score=121.28 Aligned_cols=115 Identities=13% Similarity=0.080 Sum_probs=100.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 88389986998999999999998-898899-98937--999986089989999785469888999999998578983999
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVES-YGYDVF-IVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIV 85 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~-~G~~v~-~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIi 85 (482)
+.||+||||++.+|..++.+|+. .+++|. .++++ +++.+.+.+||+|++|+.||+++|+++++++++ .++||+
T Consensus 1 Mi~I~IvDDh~l~r~gl~~~l~~~~~~~vv~~~~~~~~~l~~~~~~~~dvvllD~~mp~~~g~~~~~~l~~---~~~viv 77 (196)
T PRK10360 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPK---GMATIM 77 (196)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHC---CCCEEE
T ss_conf 91999987979999999999812999599999899999999887449999998788788620779999843---874899
Q ss_pred EECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 926899999998885057432222222222222222222222
Q gi|254780916|r 86 QTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREG 127 (482)
Q Consensus 86 iT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~ 127 (482)
+|++++.+.+..+++.|+..|+.|...+++|...+....+..
T Consensus 78 ls~~~~~~~~~~a~~~Ga~g~l~K~~~~~el~~aI~~v~~G~ 119 (196)
T PRK10360 78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGG 119 (196)
T ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 973075999999997599889977899999999999998699
No 77
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.56 E-value=4.3e-14 Score=119.22 Aligned_cols=115 Identities=13% Similarity=0.209 Sum_probs=94.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCC-CEEE-EECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 8838998699899999999999889-8899-98937--999986089989999785469888999999998578983999
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESYG-YDVF-IVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIV 85 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~G-~~v~-~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIi 85 (482)
+.||+|||||+..+..++..++..+ .++. .++++ ++..+.+.+||++++|+.||++||+++++.++.. ...++|+
T Consensus 1 M~ki~I~DDe~~~~~~l~~~l~~~~~i~~~~~~~~~~eal~~~~~~~~DllfLDI~m~~~~G~ela~~l~~~-~~~~iIF 79 (239)
T PRK11697 1 MIKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEALGAIHRLKPDVVFLDIQMPRISGLELVGMLDPE-HMPYIVF 79 (239)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCC-CCCEEEE
T ss_conf 949999969999999999999758798999998999999999985399999983998695999999983733-4986999
Q ss_pred EECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 926899999998885057432222222222222222222222
Q gi|254780916|r 86 QTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREG 127 (482)
Q Consensus 86 iT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~ 127 (482)
+|+|+ +.+..|....+.||+.||++.+++..++.++.+..
T Consensus 80 vT~~~--e~a~~af~~~a~dYllKP~~~e~l~~~l~r~~~~~ 119 (239)
T PRK11697 80 VTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQDR 119 (239)
T ss_pred EECCH--HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 95868--99999973097266538999999999999999975
No 78
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.55 E-value=1.1e-13 Score=116.45 Aligned_cols=113 Identities=19% Similarity=0.289 Sum_probs=98.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECC---HHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 2883899869989999999999988988999893---799998608-998999978546988899999999857898399
Q gi|254780916|r 9 RHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNV---SDLSTISKI-QVNVIFLSLINCEDDKENILKNIVDKIPIVPII 84 (482)
Q Consensus 9 ~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~---~al~~l~~~-~~dlillD~~mP~~dGlell~~i~~~~p~ipvI 84 (482)
...+||+|||++..+..++..|+..||.|..+.+ ++++.+... .||+|++|+.||++||+++++++++..+.+|+|
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~~~~~al~~~~~~~~~dlii~D~~mp~~~G~~~~~~l~~~~~~~pvv 83 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELPQPDLILLDINMPGMDGIELLRRLRARGPNIPVI 83 (130)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
T ss_conf 88889997899999999999998779789995783999999986278999999806887888899999999718999689
Q ss_pred EEECCCCHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 9926899999998885057432222222222-222222
Q gi|254780916|r 85 VQTTQDNIKILNCFLYNRISKFFLNLVSRKQ-LCDSII 121 (482)
Q Consensus 85 iiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~-L~~~i~ 121 (482)
++|++........+...|+.+|+.||+.... +...+.
T Consensus 84 ~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~ 121 (130)
T COG0784 84 LLTAYADEADRERALAAGADDYLTKPIFLEEELLAALR 121 (130)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
T ss_conf 99867867659999976876897589987999999999
No 79
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=99.55 E-value=1.6e-14 Score=122.32 Aligned_cols=118 Identities=16% Similarity=0.227 Sum_probs=106.2
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECC--HHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHCC----
Q ss_conf 352883899869989999999999988988999893--79999860-89989999785469888999999998578----
Q gi|254780916|r 7 LDRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNV--SDLSTISK-IQVNVIFLSLINCEDDKENILKNIVDKIP---- 79 (482)
Q Consensus 7 m~~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~--~al~~l~~-~~~dlillD~~mP~~dGlell~~i~~~~p---- 79 (482)
++.-++||+|||++....+-+.+|++.|++|..|.+ .|+..+.+ +.||++++|+.+||.||.++++.+|+.++
T Consensus 758 lsqyy~vLlVEDN~vN~~VA~gfL~~LGH~VtlA~s~~~A~~c~~~~~~FD~aLLDI~LPD~dGVtL~~~L~~~~~~k~~ 837 (1052)
T TIGR02956 758 LSQYYRVLLVEDNEVNQMVAQGFLERLGHKVTLAESGQSALRCFHQDHRFDLALLDINLPDGDGVTLLQQLRAIYKAKND 837 (1052)
T ss_pred HHHHCEEEEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 53000132464474779999999842794472085499999998548876754551578898656789999999973204
Q ss_pred ----CCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ----983999926899999998885057432222222222222222222
Q gi|254780916|r 80 ----IVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICAL 124 (482)
Q Consensus 80 ----~ipvIiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al 124 (482)
.+|+|-+|||=-.|........|=..|+.||+..++|..++...+
T Consensus 838 ~~~~p~k~iAvSAHVf~Edv~~y~~aGF~G~laKPl~~~~L~~~l~~~l 886 (1052)
T TIGR02956 838 SQDEPVKFIAVSAHVFNEDVAQYLAAGFDGFLAKPLVEEQLVAMLAKIL 886 (1052)
T ss_pred CCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 4456777222113344776999975302663479987788999999987
No 80
>PRK09191 two-component response regulator; Provisional
Probab=99.55 E-value=2.8e-14 Score=120.56 Aligned_cols=113 Identities=18% Similarity=0.139 Sum_probs=93.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEE-ECC--HHHHHHHCCCCCEEEEECCCCC-CCHHHHHHHHHHHCCCCCEEE
Q ss_conf 883899869989999999999988988999-893--7999986089989999785469-888999999998578983999
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESYGYDVFI-VNV--SDLSTISKIQVNVIFLSLINCE-DDKENILKNIVDKIPIVPIIV 85 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~G~~v~~-a~~--~al~~l~~~~~dlillD~~mP~-~dGlell~~i~~~~p~ipvIi 85 (482)
..||||||||+.+..-++.+|+..||+|.. +.+ +|++++.+.+||+|++|++++| +||++..++|++.. ++|||+
T Consensus 137 ~~rILIVEDE~lIAmdLe~~l~~lG~~V~GiA~t~~eAl~la~~~~PDlvL~DI~L~d~~sGIdaa~~I~~~~-~iPvIF 215 (261)
T PRK09191 137 ATSVLIIEDEPIIAMDLEQLVESLGHRVVGIARTRAEAVALAKKTRPGLILADIQLADGSSGIDAVNDILKTF-DVPVIF 215 (261)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHC-CCCEEE
T ss_conf 7887998585999999999999879967876278999999974259898999534799987999999999828-999899
Q ss_pred EECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9268999999988850574322222222222222222222
Q gi|254780916|r 86 QTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALR 125 (482)
Q Consensus 86 iT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~ 125 (482)
+|||.+. ...+-+-...-++.|||.++.+...+..|+-
T Consensus 216 iTAyper--lltg~~~ep~~li~KPf~~~~v~aai~qAlf 253 (261)
T PRK09191 216 ITAFPER--LLTGERPEPAFLITKPFQPDTVKAAISQALF 253 (261)
T ss_pred ECCCHHH--HCCCCCCCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf 7778465--3027888874035698988999999999997
No 81
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.52 E-value=8.6e-13 Score=110.03 Aligned_cols=175 Identities=21% Similarity=0.187 Sum_probs=121.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCC-CE-EEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 8838998699899999999999889-88-9998937--999986089989999785469888999999998578983999
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESYG-YD-VFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIV 85 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~G-~~-v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIi 85 (482)
..|||||||...+|..++++|+..| .+ |-++.++ +.+.+.+..||+|.+|+.||.|||++.++++.+. +.+|||+
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~PDVi~ld~emp~mdgl~~l~~im~~-~p~pVim 79 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLKPDVITLDVEMPVMDGLEALRKIMRL-RPLPVIM 79 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCC-CCCCEEE
T ss_conf 947999858199999999998308973799733787999999972299789972566445479999998447-9986899
Q ss_pred EECCC--CHHHHHHHHHCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 92689--9999998885057432222222222---------222222222222222222211111111222222222222
Q gi|254780916|r 86 QTTQD--NIKILNCFLYNRISKFFLNLVSRKQ---------LCDSIICALREGVVPSQENEHCALDSLIAVSPAMIQVVD 154 (482)
Q Consensus 86 iT~~~--~~~~~~~a~~~g~~d~l~KP~~~~~---------L~~~i~~al~~~~~~~~~~~~~~~~~LiG~S~~m~~v~~ 154 (482)
+|+.. ..+...++++.|+.||+.||...-. +.+.+..+-+........... -..+.......
T Consensus 80 vsslt~~g~~~t~~al~~gAvD~i~kp~~~i~~~~~~~~~~l~~kv~~~~~~~~~~l~~~~~-------~~~~~~~~~~~ 152 (350)
T COG2201 80 VSSLTEEGAEATLEALELGAVDFIAKPSGGISLGLDEVAELLIEKVRAAARQNRKSLRTPEP-------PRAPAFRPVKP 152 (350)
T ss_pred EECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC-------CCCCCCCCCCC
T ss_conf 95145213799999984574213217876544466788999999999875244201356677-------87543577777
Q ss_pred CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 2222344320488732777436799999984267543321012
Q gi|254780916|r 155 LARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIV 197 (482)
Q Consensus 155 ~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v 197 (482)
.....++...|-+=-|=..+...+-....-...|++.+
T Consensus 153 -----~~~~~~iV~IGaStGGp~AL~~il~~lP~~~p~pvvIv 190 (350)
T COG2201 153 -----GPAARKIVAIGASTGGPAALRAVLPALPADFPAPVVIV 190 (350)
T ss_pred -----CCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf -----78876389999478999999999975898889987999
No 82
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.50 E-value=1.7e-14 Score=122.15 Aligned_cols=135 Identities=25% Similarity=0.279 Sum_probs=102.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 43204887327774367999999842675433210123465542100243311255553221110012344667147516
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLE 240 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ 240 (482)
.+..+|||.|++||||+++|++|++.+.+...+|+.+||+.+......+..+++. ......+..+.+.+++||+|
T Consensus 17 ~~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~vl~iD 91 (151)
T cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF-----LVRLLFELAEKAKPGVLFID 91 (151)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHHH-----HHHHHHHHHHHCCCCEEEEE
T ss_conf 7998089989999886599999999712137982785477704677775760577-----88989999997699869820
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64200188999888877642001123553212343156521433211111123337999886543344677
Q gi|254780916|r 241 EPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINIST 311 (482)
Q Consensus 241 ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPp 311 (482)
||+.|+...|..++++|+...... ....++++|++|+.+.. +.+..++|+|+. ..|.+|+
T Consensus 92 Ei~~l~~~~~~~~~~~l~~~~~~~-----~~~~~~~vI~~tn~~~~-----~~~~~~~~~R~~-~~i~~~~ 151 (151)
T cd00009 92 EIDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATNRPLL-----GDLDRALYDRLD-IRIVIPL 151 (151)
T ss_pred CHHHCCHHHHHHHHHHHHHHCCCC-----CCCCCEEEEEEECCCCC-----CCHHHHHHCCCC-EEEECCC
T ss_conf 166559999999999998715754-----06788899995289988-----683776425598-6986389
No 83
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.50 E-value=2.2e-13 Score=114.20 Aligned_cols=205 Identities=12% Similarity=0.134 Sum_probs=133.6
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC-------CC-CCCCCCC-CCCCCCCCCCCEEEECC
Q ss_conf 777436799999984267543321012346554210024331125-------55-5322111-00123446671475166
Q gi|254780916|r 171 EFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDV-------DL-QTKNSAQ-FLGKFIEANGGTIVLEE 241 (482)
Q Consensus 171 e~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~-------~~-~~~~~~~-~~g~~~~a~~Gtl~l~e 241 (482)
..+.+|..+.+.+-.+..++..|||--.. -.+..|+|.. +| .|-+..+ ..|.+.+||+|.||+||
T Consensus 161 ~~~~~~~~~pkllv~~~~~~~aPfvdAtg------a~a~aLlGdVrHdP~qsGGlgTPah~Rv~aGAiHkA~gGvL~IDe 234 (637)
T PRK13765 161 VMPKEDAMVPKLLVSNSDKKTAPFVDATG------AHAGALLGDVRHDPFQSGGLETPAHERVEAGAIHKAHKGVLFIDE 234 (637)
T ss_pred HHCCCCCCCCCEEECCCCCCCCCEECCCC------CCHHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHCCCCEEEEEH
T ss_conf 62355355764012477777898330787------444665177424863348989996100026612113585699844
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCC----------CCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH--HHHHHHH
Q ss_conf 42001889998888776420011235----------53212343156521433211111123337999886--5433446
Q gi|254780916|r 242 PDALPLAVQGRIYNFIETGKIEFFDS----------RGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRI--SVFLINI 309 (482)
Q Consensus 242 i~~L~~~~Q~~Ll~~l~~~~~~~~g~----------~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL--~~~~i~i 309 (482)
|..|.+..|..|+++||+++|.-.|. ..++++|+++|+++|.|.-+.+ ...|.-|+ ..+.+.+
T Consensus 235 i~~L~~~~q~~Ll~alq~~k~~I~g~~e~SsgA~v~tepvP~Df~lV~aGn~d~~~~m-----~palrsri~g~gyev~~ 309 (637)
T PRK13765 235 INTLRLESQQSLLTAMQEKKYPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDAIENM-----HPALRSRIRGYGYEVYM 309 (637)
T ss_pred HHHCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHC-----CHHHHHHHHCCCEEEEE
T ss_conf 5647988999999999659153236886667762578986613699995372766643-----99888651047749982
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCC-------CHHHHHHHHHHHH---HHCCCCCC
Q ss_conf 77877442222556677764101122333321111100012233--898-------6899999999998---74389810
Q gi|254780916|r 310 STLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYP--WID-------NVQELKNILLRAV---IGLKDSHL 377 (482)
Q Consensus 310 PpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~--WPG-------NvREL~n~i~r~~---i~~~~~~i 377 (482)
-+.-++..+...-.-.|+.+..++.|+ .+.|+.+|++.+..|. |-| .+|+|-++++-|- .......+
T Consensus 310 ~~~m~dt~enr~k~arfiaqev~~dg~-iPhfdr~AVaeII~eA~R~AG~k~kLTLrLReL~~LIReAgdiA~~eg~~~V 388 (637)
T PRK13765 310 NDTMEDTPENRKKLVRFVAQEVKRDGK-IPHFDREAVEEIIREARRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGADLV 388 (637)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 356778788999999999999974388-8999989999999999974054566305289887499998899997599966
Q ss_pred CHHHHHHHHC
Q ss_conf 6889545421
Q gi|254780916|r 378 TEDRFVLLLS 387 (482)
Q Consensus 378 ~~~~~~~~l~ 387 (482)
+.+|+.....
T Consensus 389 ta~hV~~A~~ 398 (637)
T PRK13765 389 TAEHVLEAKK 398 (637)
T ss_pred CHHHHHHHHH
T ss_conf 4999999999
No 84
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.48 E-value=6.9e-14 Score=117.76 Aligned_cols=127 Identities=13% Similarity=0.047 Sum_probs=99.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC--CCCCCCCCCCEEEECC
Q ss_conf 04887327774367999999842675433210123465542100243311255553221110--0123446671475166
Q gi|254780916|r 164 IPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQF--LGKFIEANGGTIVLEE 241 (482)
Q Consensus 164 ~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~--~g~~~~a~~Gtl~l~e 241 (482)
..+|+.|++||||+.+|++++..-.....+|+.+||+.+.+...-+.|+|+..++.|..... ...+.+...+.+||||
T Consensus 4 ~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~~v~~~p~~VillDE 83 (168)
T pfam07724 4 GSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVLIDE 83 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEHH
T ss_conf 79998898998999999999999679853448855756542569998705899872624265078999838984898657
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 4200188999888877642001123553212343156521433211111
Q gi|254780916|r 242 PDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVK 290 (482)
Q Consensus 242 i~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~ 290 (482)
|+...+.+|..||++|+++.+..-.+.+--..|+-||++||..-.+...
T Consensus 84 IeKa~~~V~~~LL~ild~g~~~d~~g~~v~~~n~i~i~Tsn~g~~~~~~ 132 (168)
T pfam07724 84 IEKAHPGVQNDLLQILEGGTLTDKQGRKVDFRNTLFIMTGNFGSEKISD 132 (168)
T ss_pred HHHHCHHHHHHHHHHCCCCCEECCCCCEEECCCEEEEECCCCCCHHHHH
T ss_conf 7665899999999870587063699967844647999768737299998
No 85
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.48 E-value=1.6e-14 Score=122.23 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=94.1
Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 3899869989999999999988988999893--79999860899899997854698889999999985789839999268
Q gi|254780916|r 12 RVLIIDKDDEQIKIIKDHVESYGYDVFIVNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQTTQ 89 (482)
Q Consensus 12 rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT~~ 89 (482)
-||.|+|+|...-+-..+=+..-|+|.++.+ +|++.+....+|||++|+.||++||+++|+.+|+.+|++|||++|+.
T Consensus 19 ~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~r~~~~~~DCvv~dy~~~~~dGieLLe~vRe~~p~lP~Il~t~~ 98 (674)
T PRK13558 19 GVLFAGSDPETGPAACDLDEDGRFDVTQIRDFVAARDRVDDPDIDCVVAVHEPDGFDGVAFLEAVRQTHAEFPVVVVPTA 98 (674)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 99994688877752345666774212763238889865315898769965657888679999998613899988999567
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999988850574322222222222222222222
Q gi|254780916|r 90 DNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALR 125 (482)
Q Consensus 90 ~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~ 125 (482)
++.+.+.+|+..|+.+|++| ....+...+...+.
T Consensus 99 gsE~vas~AI~AGvt~Ylp~--~~~~~~~~~~~~i~ 132 (674)
T PRK13558 99 VDEDVARRAVDADATGLVPA--VSEDATAAIADRIE 132 (674)
T ss_pred CCHHHHHHHHHHCHHHHCCC--CCHHHHHHHHHHHH
T ss_conf 85899999875163643344--71768999999999
No 86
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.43 E-value=5.2e-13 Score=111.60 Aligned_cols=161 Identities=14% Similarity=0.122 Sum_probs=112.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC--CCCEEEEEECCCCCHHHHHHHHHHHCCCC------------------------
Q ss_conf 1111111222222222222222234--43204887327774367999999842675------------------------
Q gi|254780916|r 136 HCALDSLIAVSPAMIQVVDLARKAG--DCAIPIMIQGEFGVGKKRLSRFIHESGKR------------------------ 189 (482)
Q Consensus 136 ~~~~~~LiG~S~~m~~v~~~i~~~a--~~~~~vli~Ge~GtGK~~~A~~iH~~s~r------------------------ 189 (482)
..-|..++|+..+ ...+.-+| ..-..|||.|+.||||+++||.++..-+.
T Consensus 4 ~~Pfs~IvGQe~~----K~AL~laav~p~~ggvLi~G~~GtgKStlaR~l~~iLP~~~~~e~~~~~~~~~~~~~~~~~~~ 79 (334)
T PRK13407 4 PFPFSAIVGQEEM----KQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAEVS 79 (334)
T ss_pred CCCHHHHCCCHHH----HHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCHHHHHCC
T ss_conf 9992376493999----999999772789860899789986599999999972899511036755667742113343114
Q ss_pred ------CCCCCCCCCCCCCCCCCCHHHHHCCCC---CC-CCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf ------433210123465542100243311255---55-32211100123446671475166420018899988887764
Q gi|254780916|r 190 ------AFFPFFIVNCGMIDQDKIEKFLFGDVD---LQ-TKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIET 259 (482)
Q Consensus 190 ------~~~~fi~v~c~~~~~~~~e~~lFG~~~---~~-~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~ 259 (482)
...||+.+ |-.--|..++|.-+ +. .|...-.+|++.+||+|.||+|||..++..++.-|+..+++
T Consensus 80 ~~~~~~~~~p~v~l-----Pl~atedr~~G~ldie~al~~G~~~~~PGlLa~Ah~GVLylDEinll~~~vld~Ll~~~e~ 154 (334)
T PRK13407 80 STTMVERPTPVIDL-----PLGATEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQS 154 (334)
T ss_pred CCCCCCCCCCCCCC-----CCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHC
T ss_conf 55534489987678-----9999986644742188886269877886054340288678720533338899999988716
Q ss_pred HH--CCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20--011235532123431565214332111111233379998865433446778
Q gi|254780916|r 260 GK--IEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTL 312 (482)
Q Consensus 260 ~~--~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpL 312 (482)
|. ++|-|-+-..+++|-+|++-|- .+|.+|+-|..|.. +.+.+++.
T Consensus 155 G~~~IeReg~s~~~ParF~LVatmNP------eEg~Lrp~lLDRf~-l~v~v~~~ 202 (334)
T PRK13407 155 GENVVEREGLSIRHPARFVLVGSGNP------EEGELRPQLLDRFG-LSVEVRSP 202 (334)
T ss_pred CCEEEEECCEEEECCCCCEEEEEECC------CCCCCCHHHHHHHC-EEEEECCC
T ss_conf 95799977634603662658982088------87775989983610-06871487
No 87
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.37 E-value=3.2e-12 Score=105.96 Aligned_cols=119 Identities=13% Similarity=0.191 Sum_probs=99.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH-HHHHCCCCCEEEE
Q ss_conf 288389986998999999999998898899-98937999986089989999785469888999999-9985789839999
Q gi|254780916|r 9 RHKRVLIIDKDDEQIKIIKDHVESYGYDVF-IVNVSDLSTISKIQVNVIFLSLINCEDDKENILKN-IVDKIPIVPIIVQ 86 (482)
Q Consensus 9 ~~~rILIVDDd~~~~~~l~~~L~~~G~~v~-~a~~~al~~l~~~~~dlillD~~mP~~dGlell~~-i~~~~p~ipvIii 86 (482)
...|||++||....+..++..|+.. ..+. .+.++....-.-.+||+|++|++||+|+|++.+++ +++..|+++||++
T Consensus 9 ~g~~vlL~~dp~l~~~~~a~~l~e~-l~v~~~l~~~~~al~~~~~pdViLmDi~mp~~~gi~~~~e~i~~~~p~~kVliL 87 (216)
T PRK10100 9 HGHTLLLITKPSLQATALLQHLKQS-LAITGKLHNIQRSLDDISSGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLL 87 (216)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHH-HHHHHEECCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 6838999558429999999988987-647630247766776447999899848878830899999999725999779999
Q ss_pred ECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 268999999988850574322222222222222222222222
Q gi|254780916|r 87 TTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGV 128 (482)
Q Consensus 87 T~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~ 128 (482)
|.+++.+....+++.|+..|+.|-.++++|+..+....+...
T Consensus 88 Tt~dd~e~v~~al~aGa~GyllK~~~~~~Li~aIr~v~~G~~ 129 (216)
T PRK10100 88 NTPEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGEC 129 (216)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 688748999999765876676689999999999999987997
No 88
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.36 E-value=1.4e-12 Score=108.58 Aligned_cols=110 Identities=14% Similarity=0.175 Sum_probs=83.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC--CCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 488732777436799999984267543321012346554210024331125--555322111001234466714751664
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDV--DLQTKNSAQFLGKFIEANGGTIVLEEP 242 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~--~~~~~~~~~~~g~~~~a~~Gtl~l~ei 242 (482)
+|||.|++||||+.+|+++-... +.+|+.|+|+ .++..+.|+|.. +...+...-..|.+. +|.+|+|||
T Consensus 1 hVLL~GppG~GKT~l~~~lA~~~---~~~~~~i~~~---~~~~~~Dl~G~~~~~~~~~~~~~~~G~l~---~~vl~lDEi 71 (131)
T pfam07726 1 HVLLEGVPGLAKTLLARTLARSL---GLDFRRIQFT---PDLLPSDITGTEVYDQKTREFEFRPGPIF---ANVLLADEI 71 (131)
T ss_pred CEEEECCCCCHHHHHHHHHHHHH---CCCCEEEEEC---CCCCCCCCCCCEEECCCCCEEEEECCCCC---CCCEEEEHH
T ss_conf 98789899876999999999995---9981688833---77670003684542378740898457310---370564012
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 20018899988887764200112355321234315652143
Q gi|254780916|r 243 DALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEK 283 (482)
Q Consensus 243 ~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~ 283 (482)
...|+++|..|+++|+++++...|..-..+.++|+||+.|.
T Consensus 72 n~a~~~v~~~Ll~~l~er~v~~~g~~~~~p~~f~viAt~NP 112 (131)
T pfam07726 72 NRAPPKTQSALLEAMQERQVTIGGETHPLPEPFFVLATQNP 112 (131)
T ss_pred HCCCHHHHHHHHHHHHCEEEEECCEEEECCCCEEEEECCCC
T ss_conf 03998999999976326499779988527998499971698
No 89
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.36 E-value=3.3e-12 Score=105.95 Aligned_cols=342 Identities=13% Similarity=0.153 Sum_probs=210.8
Q ss_pred CCEEEECCCHH-------------HHHHHHHHHHHCCCEEEEECC-HHHHH-HH-----CCCCCEEEEECCCCC-CCHHH
Q ss_conf 83899869989-------------999999999988988999893-79999-86-----089989999785469-88899
Q gi|254780916|r 11 KRVLIIDKDDE-------------QIKIIKDHVESYGYDVFIVNV-SDLST-IS-----KIQVNVIFLSLINCE-DDKEN 69 (482)
Q Consensus 11 ~rILIVDDd~~-------------~~~~l~~~L~~~G~~v~~a~~-~al~~-l~-----~~~~dlillD~~mP~-~dGle 69 (482)
.-||.||+=.. ...+|+-+|.+-..+|..|.+ .+... +. ..+|..|..+ -|. .+-+.
T Consensus 279 ~~ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~LarG~l~~IgaTT~~EYrk~iekD~AL~RRFq~V~V~--EPs~e~t~~ 356 (758)
T PRK11034 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDIT--EPSIEETVQ 356 (758)
T ss_pred CEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCHHHHHCCCEEECC--CCCHHHHHH
T ss_conf 859998043442268876777646788745787469723999437799875032147888428265318--999899999
Q ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------C---------
Q ss_conf 999999857898399992689999999888505743222222222222222222222222----------2---------
Q gi|254780916|r 70 ILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVV----------P--------- 130 (482)
Q Consensus 70 ll~~i~~~~p~ipvIiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~----------~--------- 130 (482)
+|+-++..+-.--=|-+| ...++.++.-...|+.+ -+-|+.-++.+-.|-.+.+. .
T Consensus 357 IL~gl~~~yE~~H~v~~~-d~al~~av~Ls~rYi~d----r~lPDKAIdllDea~a~~~l~~~~~~~~~v~~~di~~vv~ 431 (758)
T PRK11034 357 IINGLKPKYEAHHDVRYT-AKAVRAAVELAVKYIND----RHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVA 431 (758)
T ss_pred HHHHHHHHHHHCCCCEEC-CHHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHH
T ss_conf 999899987323695774-38999999999765026----8896199999999988875134566316589999999998
Q ss_pred -----------CCCC------CCCCCCCCCCCCCCCCCCCCCCCCCC----CCCEEE---EEECCCCCHHHHHHHHHHHC
Q ss_conf -----------2222------11111111222222222222222234----432048---87327774367999999842
Q gi|254780916|r 131 -----------SQEN------EHCALDSLIAVSPAMIQVVDLARKAG----DCAIPI---MIQGEFGVGKKRLSRFIHES 186 (482)
Q Consensus 131 -----------~~~~------~~~~~~~LiG~S~~m~~v~~~i~~~a----~~~~~v---li~Ge~GtGK~~~A~~iH~~ 186 (482)
..+. +...-..++|+..++..|.+.+.+.- ..+.|+ |+.|++|+||+-+|+.+-..
T Consensus 432 ~~t~ip~~~~~~~~~~~l~~le~~l~~~viGQ~~Ai~~v~~ai~~~raGL~~~~rPigsFlf~GPTGVGKTElak~LA~~ 511 (758)
T PRK11034 432 RIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 75036076776779999998999987787454999999999999986388899997058999789987779999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC----CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 6754332101234655421002433112555532211100123----446671475166420018899988887764200
Q gi|254780916|r 187 GKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKF----IEANGGTIVLEEPDALPLAVQGRIYNFIETGKI 262 (482)
Q Consensus 187 s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~----~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~ 262 (482)
- ...++.+||+.+.+..--|.|.|..-|+-|-.. -|.| ..--...++||||+...+++..-||++|++|+.
T Consensus 512 L---~~~lir~DMSEy~e~hsvsrLiGaPPGYVGy~e--GG~Lte~Vr~~PysVvL~DEIEKAhpdV~nilLQvlD~G~L 586 (758)
T PRK11034 512 L---GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQ--GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTL 586 (758)
T ss_pred H---HHHHHCCCHHHHCCHHHHHHHCCCCCCCCCCCC--CCCCCHHHHHCCCEEEEEHHHHHHCHHHHHHHHHHCCCCCC
T ss_conf 8---667721426653120147774489986667677--77012878739877997336756398999988732377830
Q ss_pred CCCCCCCCCCCCCE---EEEECCCCCCCC----------------C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11235532123431---565214332111----------------1--11233379998865433446778774422225
Q gi|254780916|r 263 EFFDSRGAIRLDVR---LIFLTEKNLLPQ----------------V--KSHVFRKDLYYRISVFLINISTLRSRSEDIPW 321 (482)
Q Consensus 263 ~~~g~~~~~~~~~R---iIa~t~~~L~~~----------------~--~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~ 321 (482)
. +...+++||| ||.+||.--.+. + -...|+++++-|+..+. ..-||.+ +++..
T Consensus 587 t---D~~Gr~vdF~NtiIImTSN~Ga~~~~~~~~gf~~~~~~~~~~~~l~~~F~PEFlNRiD~ii-~F~~L~~--~~l~~ 660 (758)
T PRK11034 587 T---DNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNII-WFDHLST--DVIHQ 660 (758)
T ss_pred C---CCCCCEEECEEEEEEEECCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCEEE-EECCCCH--HHHHH
T ss_conf 1---7999988440019998256174878642147554203599999999547986772367478-6388999--99999
Q ss_pred HHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHH
Q ss_conf 5667776410112233--332111110001223389--868999999999987
Q gi|254780916|r 322 LVHFFLQSFCTKNAIK--QISISDKALSLLTKYPWI--DNVQELKNILLRAVI 370 (482)
Q Consensus 322 L~~~fl~~~~~~~~~~--~~~ls~~a~~~L~~y~WP--GNvREL~n~i~r~~i 370 (482)
+++-++.++.++.... ...+++++..+|....|- =--|.|+.+|++-+.
T Consensus 661 Iv~~~l~~l~~rL~~~~i~l~~~~~a~~~l~~~gyd~~~GARpl~R~I~~~i~ 713 (758)
T PRK11034 661 VVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999999999789859988999999998488945371128899999988
No 90
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.35 E-value=2.7e-12 Score=106.52 Aligned_cols=115 Identities=19% Similarity=0.265 Sum_probs=86.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC--CCCEEEECCC
Q ss_conf 48873277743679999998426754332101234655421002433112555532211100123446--6714751664
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEA--NGGTIVLEEP 242 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a--~~Gtl~l~ei 242 (482)
+||++|++||||+.+|+.+.+.- .+.|++.++|+. +.-.+.|+|......+...-..|.+-.| ++|.||||||
T Consensus 1 ~vll~Gp~G~GKT~la~~la~~l--~~~~~~~i~~~~---~~~~~dl~G~~~~~~~~~~~~~g~l~~a~~~g~vl~lDEi 75 (139)
T pfam07728 1 GVLLVGPPGTGKSELAERLAAAL--SNRPVFYVQLTR---DTTEEDLKGRRNIANGTTSWVDGPLVRAAREGEIAVLDEI 75 (139)
T ss_pred CEEEECCCCCHHHHHHHHHHHHC--CCCCCHHHCCCC---CCCHHHCCCCEECCCCCEEEECCHHHCCCCCCCEEEECCH
T ss_conf 98999899756999999999980--798311121465---5652220573423799357815514101012868996343
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCC-------CCCCEEEEECCCC
Q ss_conf 20018899988887764200112355321-------2343156521433
Q gi|254780916|r 243 DALPLAVQGRIYNFIETGKIEFFDSRGAI-------RLDVRLIFLTEKN 284 (482)
Q Consensus 243 ~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~-------~~~~RiIa~t~~~ 284 (482)
...++++|..|+.+|+++++....+.+.. ..++|+||+.|..
T Consensus 76 n~a~~~v~~~L~~~le~~~~~~~~~~~~~~~~~~~~~~~f~viaT~N~~ 124 (139)
T pfam07728 76 NRANPDVLNSLLSLLDERRLLLPEGGELVKVAPDDFAKRFRLIATMNPL 124 (139)
T ss_pred HHCCHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCEEEEEEECCC
T ss_conf 4489999999999974896983689727336666789996999975896
No 91
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.34 E-value=1.2e-11 Score=101.85 Aligned_cols=210 Identities=19% Similarity=0.217 Sum_probs=137.8
Q ss_pred CCCCCCCCCCCCCCCC---CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 1111111222222222---2222222344320488732777436799999984267543321012346554210024331
Q gi|254780916|r 136 HCALDSLIAVSPAMIQ---VVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLF 212 (482)
Q Consensus 136 ~~~~~~LiG~S~~m~~---v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lF 212 (482)
...+++++|+...+-. ++..+.. ..-.++++.|++||||+++|+.|-... +.+|+.+|.+.-....+. +++
T Consensus 9 P~~lde~vGQ~hllg~~~~L~~~i~~--~~~~s~Il~GPPG~GKTTlA~iiA~~~---~~~f~~lnA~~~gv~dir-~ii 82 (417)
T PRK13342 9 PKTLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGAT---DAEFEALSAVTSGVKDLR-EVI 82 (417)
T ss_pred CCCHHHHCCCHHHHCCCHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCHHHHH-HHH
T ss_conf 99888857987760897199999976--999759988969998999999999986---898899614103889999-999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCH
Q ss_conf 12555532211100123446671-47516642001889998888776420011235532123431565214332111111
Q gi|254780916|r 213 GDVDLQTKNSAQFLGKFIEANGG-TIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKS 291 (482)
Q Consensus 213 G~~~~~~~~~~~~~g~~~~a~~G-tl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~ 291 (482)
.. +... ...++ .||+||||.+....|.-||..+++|. +-+|++|+.|+.-.+..
T Consensus 83 ~~------a~~~------~~~~~tilfiDEIHRfnK~QQD~LLp~vE~g~-------------iiLIgATTENP~f~in~ 137 (417)
T PRK13342 83 EE------AKQS------RLGRRTILFIDEIHRFNKAQQDALLPHVEDGT-------------ITLIGATTENPSFEVNP 137 (417)
T ss_pred HH------HHHH------HCCCCEEEEEECHHHCCHHHHHHHHHHHHCCC-------------EEEEEECCCCCHHHCCH
T ss_conf 99------8863------14896599997820058899999987511265-------------69997415792253489
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23337999886543344677877442222556677764101122333321111100012233898689999999999874
Q gi|254780916|r 292 HVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIG 371 (482)
Q Consensus 292 g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~ 371 (482)
-|..|..++ .+-||. .+||..++..-++. .+..+. ...++++|++.|..+. -|..|-+=|.++.+...
T Consensus 138 -----aLlSRc~vf--~l~~L~--~~di~~iL~ral~~-e~~~~~-~i~i~~~al~~i~~~s-~GDaR~aLN~LE~a~~~ 205 (417)
T PRK13342 138 -----ALLSRAQVF--ELKPLS--EEDLEQLLKRALED-ERGLGR-KLELDDEALDALARLA-DGDARRALNLLELAAAA 205 (417)
T ss_pred -----HHHHHHHHE--ECCCCC--HHHHHHHHHHHHHH-HHCCCC-CCCCCHHHHHHHHHHC-CCCHHHHHHHHHHHHHC
T ss_conf -----898565700--205899--99999999999987-743378-8776999999999814-98599999999999852
Q ss_pred CC-CCCCCHHHHHHHHCC
Q ss_conf 38-981068895454212
Q gi|254780916|r 372 LK-DSHLTEDRFVLLLSR 388 (482)
Q Consensus 372 ~~-~~~i~~~~~~~~l~~ 388 (482)
.. +..|+.+.+...+..
T Consensus 206 ~~~~~~i~~~~~~~~~~~ 223 (417)
T PRK13342 206 AAGGEVITLELLEEALQR 223 (417)
T ss_pred CCCCCCCCHHHHHHHHHH
T ss_conf 589973489999999844
No 92
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.27 E-value=6.7e-12 Score=103.75 Aligned_cols=222 Identities=20% Similarity=0.244 Sum_probs=156.4
Q ss_pred CCCCCCCCCCCCCCCCCCCC----CCCEEE---EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 11222222222222222234----432048---87327774367999999842675433210123465542100243311
Q gi|254780916|r 141 SLIAVSPAMIQVVDLARKAG----DCAIPI---MIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG 213 (482)
Q Consensus 141 ~LiG~S~~m~~v~~~i~~~a----~~~~~v---li~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG 213 (482)
.++|+..++..|.+.|.+.- .-+.|| |+.|++|+||+-+|+++-..-......+|.+||+.+.+..--|.|.|
T Consensus 569 rViGQd~AI~~v~~aI~~sraGL~dp~rPiGsFLFlGPTGVGKTElAK~LA~~LF~~e~~liriDMSEy~E~hsVSrLiG 648 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVG 648 (857)
T ss_pred HHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHEEEECCHHHCCCHHHHHHCC
T ss_conf 85280999999999999986389999997389998689878889999999999838933425625332113012767558
Q ss_pred CCCCCCCCCCCCCCCC----CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE---EEEECCCCC-
Q ss_conf 2555532211100123----44667147516642001889998888776420011235532123431---565214332-
Q gi|254780916|r 214 DVDLQTKNSAQFLGKF----IEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVR---LIFLTEKNL- 285 (482)
Q Consensus 214 ~~~~~~~~~~~~~g~~----~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R---iIa~t~~~L- 285 (482)
..-|+-|-.. -|.| ..--...++||||+...++++.-||+++++|+.. +...+.+||| ||.+||.--
T Consensus 649 aPPGYVGy~e--GG~LTeaVRr~PySVvLfDEIEKAHpdV~nilLQvlD~G~Lt---D~~Gr~vdF~NtIIImTSN~Gs~ 723 (857)
T PRK10865 649 APPGYVGYEE--GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLT---DGQGRTVDFRNTVVIMTSNLGSD 723 (857)
T ss_pred CCCCCCCCCC--CCCHHHHHHHCCCEEEEEHHHHHHCHHHHHHHHHHHCCCEEE---CCCCCEEEEEEEEEEECCCHHHH
T ss_conf 9987667577--881109998198778863257663858999999870368320---79998885133489964623369
Q ss_pred --------------CC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCCCCC
Q ss_conf --------------11---11112333799988654334467787744222255667776410112233--332111110
Q gi|254780916|r 286 --------------LP---QVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIK--QISISDKAL 346 (482)
Q Consensus 286 --------------~~---~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~--~~~ls~~a~ 346 (482)
.+ .+-...|+++++-|+..+.+. -||- .+++..++..++.+..+++... ...+++++.
T Consensus 724 ~i~~~~~~~~~~~~~~~~~~~l~~~F~PEFlnRiD~iv~F-~pL~--~~~l~~Iv~~~l~~l~~rL~~~~i~l~~~~~a~ 800 (857)
T PRK10865 724 LIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVF-HPLG--EQHIASIAQIQLQRLYKRLEERGYEIHISDEAL 800 (857)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCEEEEE-CCCC--HHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_conf 9986506556688999999999864798888237848982-7899--999999999999999999997798499888999
Q ss_pred CCCCCCCCC--CCHHHHHHHHHHHHH
Q ss_conf 001223389--868999999999987
Q gi|254780916|r 347 SLLTKYPWI--DNVQELKNILLRAVI 370 (482)
Q Consensus 347 ~~L~~y~WP--GNvREL~n~i~r~~i 370 (482)
..|....+- ---|.|+.+|++-+.
T Consensus 801 ~~l~~~gyd~~~GARpl~r~I~~~i~ 826 (857)
T PRK10865 801 KLLSENGYDPVYGARPLKRAIQQQIE 826 (857)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 99998488977471378999999988
No 93
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.26 E-value=1.5e-11 Score=101.32 Aligned_cols=223 Identities=14% Similarity=0.220 Sum_probs=156.5
Q ss_pred CCCCCCCCCCCCCCCCCCCC----CCCCEEE---EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 11122222222222222223----4432048---8732777436799999984267543321012346554210024331
Q gi|254780916|r 140 DSLIAVSPAMIQVVDLARKA----GDCAIPI---MIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLF 212 (482)
Q Consensus 140 ~~LiG~S~~m~~v~~~i~~~----a~~~~~v---li~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lF 212 (482)
..++|+..++..|-+.+.+. ...+.|+ |+.|++|+||+.+|+++-..-......+|.+||+.+.+..--|.|.
T Consensus 509 ~~ViGQd~AI~~vs~ai~rsraGl~~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~E~hsvsrLI 588 (823)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYMEKHTVSKLI 588 (823)
T ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHC
T ss_conf 78407699999999999999708998999746899878998877999999999974782025885351015542076745
Q ss_pred CCCCCCCCCCCCCCCCC----CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE---EEEECCCCC
Q ss_conf 12555532211100123----44667147516642001889998888776420011235532123431---565214332
Q gi|254780916|r 213 GDVDLQTKNSAQFLGKF----IEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVR---LIFLTEKNL 285 (482)
Q Consensus 213 G~~~~~~~~~~~~~g~~----~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R---iIa~t~~~L 285 (482)
|..-|+-|=.. -|.| .+--...++||||+...+++..-||++|++|+.. +...+++||| ||.+||.--
T Consensus 589 GaPPGYVGy~e--GG~LTeaVrr~PysVvLfDEIEKAHpdV~nilLQvlDdG~Lt---D~~Gr~vdF~NtIIImTSNlGs 663 (823)
T CHL00095 589 GSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLT---DSKGRTIDFKNTLIIMTSNLGS 663 (823)
T ss_pred CCCCCCCCCCC--CCCHHHHHHCCCCEEEEECHHHHCCHHHHHHHHHHCCCCCCC---CCCCCEEECEEEEEEECCCCCH
T ss_conf 89987667787--882019887199869986213113889999887651688434---8999988431039997165055
Q ss_pred CCC--------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 111--------------------------------111233379998865433446778774422225566777641011
Q gi|254780916|r 286 LPQ--------------------------------VKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTK 333 (482)
Q Consensus 286 ~~~--------------------------------~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~ 333 (482)
+.. .-...|+++++-||..+.+. -||. ++|+..+++.++....++
T Consensus 664 ~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFlnRiDeii~F-~~L~--~~~l~~Iv~~~l~~l~~r 740 (823)
T CHL00095 664 KVIEKGGGSLGFKLLEDGTKLDEKQYKRLSNLVNEELKQYFRPEFLNRLDEIIVF-RPLT--KDEVWEIAEIMLKELFKR 740 (823)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEE-CCCC--HHHHHHHHHHHHHHHHHH
T ss_conf 8887413443433344543220235899999999999843798787327827861-8999--999999999999999999
Q ss_pred CCCC--CCCCCCCCCCCCCCCCC-C-CCHHHHHHHHHHHHH
Q ss_conf 2233--33211111000122338-9-868999999999987
Q gi|254780916|r 334 NAIK--QISISDKALSLLTKYPW-I-DNVQELKNILLRAVI 370 (482)
Q Consensus 334 ~~~~--~~~ls~~a~~~L~~y~W-P-GNvREL~n~i~r~~i 370 (482)
.... ...+++++...|....+ | ---|.|+.+|++-+.
T Consensus 741 l~~~~i~l~~~~~a~~~l~~~gy~~~~GARpl~R~I~~~i~ 781 (823)
T CHL00095 741 LNNQGIQLEVDERFKTLLAKEGYNPLYGARPLRRAIMRLLE 781 (823)
T ss_pred HHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 99689859988899999999587977681368899999988
No 94
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.25 E-value=1.8e-11 Score=100.69 Aligned_cols=201 Identities=19% Similarity=0.221 Sum_probs=131.5
Q ss_pred CCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 211111111222222222---22222223443204887327774367999999842675433210123465542100243
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQ---VVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKF 210 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~---v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~ 210 (482)
-....++.+||++..+-. +++.|+ +..-.++.+.|++||||+++|+.|-+.+. .+|+.+|...-...-+...
T Consensus 22 mRP~~Lde~vGQ~hllg~g~~Lrr~i~--~~~~~S~Il~GPPGtGKTTLA~iIA~~t~---~~F~~lsAv~sgvkdlr~i 96 (726)
T PRK13341 22 LRPRTLEEFVGQDHILGEGRLLRRAIK--ADRVGSLILYGPPGVGKTTLARIIANHTR---AHFSSLNAVLAGVKDLRAE 96 (726)
T ss_pred HCCCCHHHHCCCHHHCCCCCHHHHHHH--CCCCCEEEEECCCCCCHHHHHHHHHHHHC---CCEEEEECCCCCHHHHHHH
T ss_conf 299987773595754289828999997--69998278889799999999999988748---8679985620377999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCC-CCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 31125555322111001234466-71475166420018899988887764200112355321234315652143321111
Q gi|254780916|r 211 LFGDVDLQTKNSAQFLGKFIEAN-GGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQV 289 (482)
Q Consensus 211 lFG~~~~~~~~~~~~~g~~~~a~-~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~ 289 (482)
+ ..+ ..+ +..-+ .-.||+||||.+...-|.-||-++++|.+ -+|.+|+.|+--.|
T Consensus 97 -i------~~A-~~~---~~~~g~~tILFIDEIHRfNK~QQD~LLp~vE~G~i-------------~LIGATTENP~F~v 152 (726)
T PRK13341 97 -V------DAA-KER---LERHGKRTILFIDEVHRFNKAQQDALLPWVENGTV-------------TLIGATTENPYFEV 152 (726)
T ss_pred -H------HHH-HHH---HHHCCCCEEEEEECHHHCCHHHHHHHHHHHCCCEE-------------EEEEECCCCCCEEE
T ss_conf -9------999-999---87459965999862542588789987888606838-------------99970478974364
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 11233379998865433446778774422225566777641011223333211111000122338986899999999998
Q gi|254780916|r 290 KSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAV 369 (482)
Q Consensus 290 ~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~ 369 (482)
..- |.-|..++ .+-||.+ +||..++..-++...+.++.....++++|++.|..+. -|..|-+=|.++-++
T Consensus 153 n~A-----LlSR~~vf--~L~~L~~--~dl~~il~rAl~d~~~g~~~~~i~i~~~al~~l~~~s-~GDaR~aLN~LElav 222 (726)
T PRK13341 153 NKA-----LVSRSRLF--RLKSLED--EDLHQLLKRALQDKERGYGDRNIDLEPEAEKHLVDVA-NGDARSLLNALELAV 222 (726)
T ss_pred CHH-----HHHHCEEE--EECCCCH--HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_conf 298-----88323466--7438999--9999999999876743256678775989999999975-973999999999999
Q ss_pred HHCC
Q ss_conf 7438
Q gi|254780916|r 370 IGLK 373 (482)
Q Consensus 370 i~~~ 373 (482)
..+.
T Consensus 223 ~~~~ 226 (726)
T PRK13341 223 ESTP 226 (726)
T ss_pred HHCC
T ss_conf 7074
No 95
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.25 E-value=7e-12 Score=103.58 Aligned_cols=221 Identities=15% Similarity=0.212 Sum_probs=154.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCC----CCCEEE---EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 111222222222222222234----432048---8732777436799999984267543321012346554210024331
Q gi|254780916|r 140 DSLIAVSPAMIQVVDLARKAG----DCAIPI---MIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLF 212 (482)
Q Consensus 140 ~~LiG~S~~m~~v~~~i~~~a----~~~~~v---li~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lF 212 (482)
..++|+..++..|-+.|.+.- ..+.|+ |+.|++|+||+-+|+++-..-......+|.+||+.+.+..--|.|.
T Consensus 566 ~~ViGQ~~Av~~v~~ai~~sraGl~d~~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR~DMSEy~E~hsvsrLi 645 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLK 645 (852)
T ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHCCHHHHHHHC
T ss_conf 99728499999999999998717999999856899878998778999999999971986114784224321043687863
Q ss_pred CCCCCCCCCCCCCCCCC----CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE---EEEECCCCC
Q ss_conf 12555532211100123----44667147516642001889998888776420011235532123431---565214332
Q gi|254780916|r 213 GDVDLQTKNSAQFLGKF----IEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVR---LIFLTEKNL 285 (482)
Q Consensus 213 G~~~~~~~~~~~~~g~~----~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R---iIa~t~~~L 285 (482)
|..-|+-|=.. -|.| ..--...++||||+...+++..-||++|++|+.. +...+++||| ||.+||.--
T Consensus 646 GaPPGYVGy~e--GG~LTe~Vrr~PysVvLfDEIEKAHpdV~nilLQvlD~G~Lt---D~~Gr~vdF~NtIIImTSN~Gs 720 (852)
T TIGR03345 646 GSPPGYVGYGE--GGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVME---DGEGREIDFKNTVILLTSNAGS 720 (852)
T ss_pred CCCCCCCCCCC--CCHHHHHHHHCCCEEEEECHHHHCCHHHHHHHHHHHCCCEEE---CCCCCEEECEEEEEEECCCHHH
T ss_conf 89997667487--772109888099868886113002889999999872467775---7999988452129997572447
Q ss_pred -------------------CCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCCC
Q ss_conf -------------------11111---12333799988654334467787744222255667776410112----23333
Q gi|254780916|r 286 -------------------LPQVK---SHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKN----AIKQI 339 (482)
Q Consensus 286 -------------------~~~~~---~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~----~~~~~ 339 (482)
.+.+. ...||+++.-|+..+++. ||- .+++..++..++.+..++. |. ..
T Consensus 721 ~~i~~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFlnRi~ii~F~--~L~--~~~l~~Iv~~~l~~l~~rL~~~~~i-~l 795 (852)
T TIGR03345 721 DLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYL--PLD--DDVLAAIVRLKLDRIARRLKENHGA-EL 795 (852)
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCEEEEEEC--CCC--HHHHHHHHHHHHHHHHHHHHHCCCC-EE
T ss_conf 999864037655566899999999999834798886456689736--899--9999999999999999999862896-89
Q ss_pred CCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHH
Q ss_conf 211111000122338--9868999999999987
Q gi|254780916|r 340 SISDKALSLLTKYPW--IDNVQELKNILLRAVI 370 (482)
Q Consensus 340 ~ls~~a~~~L~~y~W--PGNvREL~n~i~r~~i 370 (482)
.+++++..+|....+ .=--|.|+.+|++-+.
T Consensus 796 ~~~~~~~~~l~~~g~~~~~GARpl~r~I~~~i~ 828 (852)
T TIGR03345 796 VYSEALVEHIVARCTEVESGARNIDAILNQTLL 828 (852)
T ss_pred EECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 988999999998289977686438999999988
No 96
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.23 E-value=2.2e-11 Score=100.08 Aligned_cols=223 Identities=19% Similarity=0.240 Sum_probs=154.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCC----CCCEEE---EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 111222222222222222234----432048---8732777436799999984267543321012346554210024331
Q gi|254780916|r 140 DSLIAVSPAMIQVVDLARKAG----DCAIPI---MIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLF 212 (482)
Q Consensus 140 ~~LiG~S~~m~~v~~~i~~~a----~~~~~v---li~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lF 212 (482)
..++|+..++..|.+.+.+.- +-+.|+ |+.|++|+||+.+|+++-..-......++.+||+.+.+..--|.|.
T Consensus 565 ~rViGQd~AI~~I~~aI~~sraGL~dp~rP~GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDMSEy~E~hsvsrLi 644 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLI 644 (852)
T ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHCCHHHHHHHC
T ss_conf 89717099999999999999718888999745899867887768999999999985585206984304430122477855
Q ss_pred CCCCCCCCCCCCCCCCCC----CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE---EEEECCCCC
Q ss_conf 125555322111001234----4667147516642001889998888776420011235532123431---565214332
Q gi|254780916|r 213 GDVDLQTKNSAQFLGKFI----EANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVR---LIFLTEKNL 285 (482)
Q Consensus 213 G~~~~~~~~~~~~~g~~~----~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R---iIa~t~~~L 285 (482)
|..-|+-|-.. -|.+- .--...++||||+...++++.-||+++++|+.. +...+++||| ||.+||..-
T Consensus 645 GaPPGYVGy~e--gG~Lte~vr~~PysVvL~DEIEKAh~~V~~~lLQilD~G~lt---D~~Gr~vdF~NtiiimTSN~Ga 719 (852)
T TIGR03346 645 GAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLT---DGQGRTVDFRNTVIIMTSNLGS 719 (852)
T ss_pred CCCCCCCCCCC--CCEECHHHHHCCCEEEEECCHHHHCHHHHHHHHHHHCCCEEE---CCCCCEEEEEEEEEEEECCCCH
T ss_conf 89997677687--874239898198879985305430768999999882367430---7999888535568986154065
Q ss_pred CC------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCC
Q ss_conf 11------------------1111233379998865433446778774422225566777641011223--333211111
Q gi|254780916|r 286 LP------------------QVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAI--KQISISDKA 345 (482)
Q Consensus 286 ~~------------------~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~--~~~~ls~~a 345 (482)
.. ..-...|+++|+-|+..+.+ .-||. .+++..++..++.+..++... -...+++++
T Consensus 720 ~~i~~~~~~~~~~~~~~~~~~~~~~~F~PEflnRid~ii~-F~~L~--~~~l~~I~~~~l~~l~~~l~~~~i~l~~~~~~ 796 (852)
T TIGR03346 720 QFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVV-FHPLG--REQIARIVEIQLGRLRKRLAERKITLELSDAA 796 (852)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCEEEE-ECCCC--HHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_conf 9997411455579999999999996589989963786898-37899--99999999999999999999779849988899
Q ss_pred CCCCCCCCCC--CCHHHHHHHHHHHHH
Q ss_conf 0001223389--868999999999987
Q gi|254780916|r 346 LSLLTKYPWI--DNVQELKNILLRAVI 370 (482)
Q Consensus 346 ~~~L~~y~WP--GNvREL~n~i~r~~i 370 (482)
...|....+- ---|.|+.+|++-+.
T Consensus 797 ~~~l~~~g~~~~~GAR~l~r~i~~~i~ 823 (852)
T TIGR03346 797 LDFLAEAGYDPVYGARPLKRAIQREIE 823 (852)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 999998488977471569999999988
No 97
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.20 E-value=3.3e-11 Score=98.81 Aligned_cols=158 Identities=18% Similarity=0.130 Sum_probs=102.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC----CCCCCCCCCCCC---------
Q ss_conf 1111111122222222222222223443204887327774367999999842675----433210123465---------
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKR----AFFPFFIVNCGM--------- 201 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r----~~~~fi~v~c~~--------- 201 (482)
...-|..++|+...-..+. +.-+...--.|||.|+.||||++++|++++.-+. ++.|| ||--
T Consensus 7 ~~fPf~aIvGQe~~k~aLl--l~av~p~iGgVLi~G~~GtgKStlvRala~lLP~i~~v~~~~f---~~~p~~p~~~~~~ 81 (347)
T CHL00081 7 PVFPFTAIVGQEEMKLALL--LNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKNDPF---NSDPRDPDLMSDE 81 (347)
T ss_pred CCCCHHHHCCHHHHHHHHH--HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCC---CCCCCCCCCCCHH
T ss_conf 8898406538499999999--9825788786998789987499999999985787422068876---7898981002426
Q ss_pred ----------------------CCCCCCHHHHHCCCC---CC-CCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf ----------------------542100243311255---55-3221110012344667147516642001889998888
Q gi|254780916|r 202 ----------------------IDQDKIEKFLFGDVD---LQ-TKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYN 255 (482)
Q Consensus 202 ----------------------~~~~~~e~~lFG~~~---~~-~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~ 255 (482)
+|-..-|..++|..+ +. .|...-..|++.+||+|.||+|||..|+..+|.-||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~p~v~lPlgaTEDrv~GslDie~al~~G~~~f~pGlLa~A~rGiLyvDEINll~d~~v~~LLd 161 (347)
T CHL00081 82 VRERIRNGEKIPTKKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLD 161 (347)
T ss_pred HHHHHCCCCCCCCEECCCCEEECCCCCCCCEECCCHHHHHHHHCCCCCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHH
T ss_conf 66543146667521146862536888852301140009989845871156531222038858861454323799999999
Q ss_pred HHHHHH--CCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 776420--011235532123431565214332111111233379998865
Q gi|254780916|r 256 FIETGK--IEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRIS 303 (482)
Q Consensus 256 ~l~~~~--~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~ 303 (482)
++++|. +++-|=....++.|=+|++ .|++ +|.+|+-|..|..
T Consensus 162 a~a~G~~~VEReG~S~~~Pa~F~liaT--~NPe----EgeLrp~llDRF~ 205 (347)
T CHL00081 162 SAASGWNTVEREGISIRHPARFVLIGS--GNPE----EGELRPQLLDRFG 205 (347)
T ss_pred HHHCCEEEECCCCEEECCCCCEEEEEC--CCCC----CCCCCHHHHHHEE
T ss_conf 985580898046423305750068855--7865----5674888882632
No 98
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.16 E-value=7.5e-10 Score=89.26 Aligned_cols=208 Identities=17% Similarity=0.170 Sum_probs=124.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHC--CCCCCCCCCCCCCCCCC-CCCCHHHHHC
Q ss_conf 11111122222222222222223443204887327774367999999842--67543321012346554-2100243311
Q gi|254780916|r 137 CALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES--GKRAFFPFFIVNCGMID-QDKIEKFLFG 213 (482)
Q Consensus 137 ~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~--s~r~~~~fi~v~c~~~~-~~~~e~~lFG 213 (482)
..+++++|+......+...+.. ..--++|+.|++||||+.+|+++-.. +.-....++.+|++.-. -+.+.+.+
T Consensus 13 ~~l~di~g~~~~~~~L~~~i~~--~~~phlLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd~r~id~vr~~i-- 88 (318)
T PRK00440 13 RSLDEVVGQEEIVERLKSFVKE--KNMPHLLFAGPPGTGKTTAALALARELYGEYWRENFLELNASDERGIDVIRNKI-- 88 (318)
T ss_pred CCHHHHCCCHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHH--
T ss_conf 9899941969999999999987--998669888959988999999999997698643476895164566717899999--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHH
Q ss_conf 25555322111001234466714751664200188999888877642001123553212343156521433211111123
Q gi|254780916|r 214 DVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHV 293 (482)
Q Consensus 214 ~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~ 293 (482)
+.+. .. .-+.....-.++|||++.|+...|..|++.+++- +.++|+|.+|+.. ......
T Consensus 89 --~~~~--~~---~~~~~~~~kiiiiDE~d~l~~~aq~aL~~~mE~~-----------~~~~~fil~~n~~-~kii~~-- 147 (318)
T PRK00440 89 --KEFA--RT---APVGGAPFKIIFLDEADNLTSDAQQALRRTMEMY-----------SQTTRFILSCNYS-SKIIDP-- 147 (318)
T ss_pred --HHHH--HH---CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC-----------CCCCEEEEECCCC-CCCCCC--
T ss_conf --9999--72---6778997389998685532255678887643105-----------6662588634883-337615--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 33799988654334467787744222255667776410112233332111110001223389868999999999987438
Q gi|254780916|r 294 FRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLK 373 (482)
Q Consensus 294 fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~ 373 (482)
+--| ...|+++|+.+ ++|. ..|...|.+.| ..++++++..+....= ||+|.--|.++.+.. .
T Consensus 148 ----i~SR--c~~i~f~~~~~--~~i~----~~L~~I~~~E~---i~~~~~~l~~i~~~s~-gdlR~ain~Lq~~~~--~ 209 (318)
T PRK00440 148 ----IQSR--CAVFRFSPLPK--EAVI----ERLRYIAKNEG---LEITDDALEAIYYVSE-GDMRKAINALQAAAA--T 209 (318)
T ss_pred ----HHHH--HEEEECCCCCH--HHHH----HHHHHHHHHCC---CCCCHHHHHHHHHHCC-CCHHHHHHHHHHHHH--C
T ss_conf ----5655--10111578999--9999----99999999859---9989999999998649-989999999999997--4
Q ss_pred CCCCCHHHHHHHHC
Q ss_conf 98106889545421
Q gi|254780916|r 374 DSHLTEDRFVLLLS 387 (482)
Q Consensus 374 ~~~i~~~~~~~~l~ 387 (482)
+..++.+.+....+
T Consensus 210 ~~~it~~~v~~~~~ 223 (318)
T PRK00440 210 GKEVTEEAVYKITG 223 (318)
T ss_pred CCCCCHHHHHHHHC
T ss_conf 89878999999976
No 99
>PRK01905 DNA-binding protein Fis; Provisional
Probab=99.15 E-value=7.1e-11 Score=96.47 Aligned_cols=49 Identities=31% Similarity=0.347 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 4325899999999999999982872789997848998899999998188
Q gi|254780916|r 429 DGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREYNI 477 (482)
Q Consensus 429 ~~~~~~l~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~~gi 477 (482)
+.+...++++|+.+|..+|++|+||+++||++|||+|+||++||++|||
T Consensus 28 ~ly~~vl~evE~pLi~~vl~~~~gNQ~kAA~~LGinR~TLRkKlk~ygl 76 (77)
T PRK01905 28 DVYDMVLSCVEKPLLEVVMEQAGGNQSLAAEYLGINRNTLRKKLQQHGL 76 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf 6999999998999999999984594999999978658889999998089
No 100
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.15 E-value=2.1e-10 Score=93.13 Aligned_cols=120 Identities=14% Similarity=0.151 Sum_probs=99.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEEC-C--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 288389986998999999999998898899989-3--7999986089989999785469888999999998578983999
Q gi|254780916|r 9 RHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVN-V--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIV 85 (482)
Q Consensus 9 ~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~-~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIi 85 (482)
...|||++||++..+..+...|...||++..+. + .+.+.+...+||+|++|+.||..|-++-+ .+.+..+.-|+|+
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~pDvVildie~p~rd~~e~~-~~~~~~~~~piv~ 82 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQPDVVILDIEMPRRDIIEAL-LLASENVARPIVA 82 (194)
T ss_pred CCCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCEEEEECCCCCCCHHHHH-HHHHCCCCCCEEE
T ss_conf 665303424113555678989987597387654134475067785299879996678773289998-9860589987899
Q ss_pred EECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 92689999999888505743222222222222222222222222
Q gi|254780916|r 86 QTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVV 129 (482)
Q Consensus 86 iT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~ 129 (482)
+|++++...+..+...|+..|++||++..++...+.-|..+...
T Consensus 83 lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf~~ 126 (194)
T COG3707 83 LTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRFEE 126 (194)
T ss_pred EECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 97167858999999738749883476542104799999998899
No 101
>PRK00430 fis DNA-binding protein Fis; Provisional
Probab=99.14 E-value=8.4e-11 Score=95.96 Aligned_cols=52 Identities=27% Similarity=0.446 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 4543258999999999999999828727899978489988999999981888
Q gi|254780916|r 427 GQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREYNIE 478 (482)
Q Consensus 427 ~~~~~~~~l~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~~gi~ 478 (482)
..+.+...++|+|+.+|..+|++|+||+++||++|||+|+||++||++|||.
T Consensus 47 ~~~ly~~vl~evE~pLl~~vL~~t~gNqskAA~~LGInR~TLRkKlk~ygl~ 98 (98)
T PRK00430 47 VNDLYELVLAEVEAPLLDMVMQYTRGNQTRAALMLGINRGTLRKKLKKYGMN 98 (98)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 2069999999989999999999966959999999787788999999984889
No 102
>pfam00493 MCM MCM2/3/5 family.
Probab=99.14 E-value=6.6e-10 Score=89.63 Aligned_cols=114 Identities=16% Similarity=0.214 Sum_probs=84.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCC-CCC--CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 4320488732777436799999984267543321012-346--5542100243311255553221110012344667147
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIV-NCG--MIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTI 237 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v-~c~--~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl 237 (482)
..+.+||+.|.+||||+.+.++++..++|. -|++- .++ +++.... ++..+|...-..|.+-.|++|++
T Consensus 55 Rg~ihiLLvGdPG~gKSqlLk~~~~~~pr~--~~tsg~~ss~~GLTa~~~-------~d~~~~~~~leaGalvlAd~Gv~ 125 (327)
T pfam00493 55 RGDINVLLVGDPGTAKSQLLKYVAKLAPRA--VYTSGKGSSAAGLTAAVV-------RDPDTGEWTLEAGALVLADGGVC 125 (327)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCC--EEECCCCCCCCCCEEEEE-------EECCCCCEEEECCCEEECCCCEE
T ss_conf 365118984699815609999999868870--883177665677615899-------80688836983684775589827
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCEEEEECCC
Q ss_conf 5166420018899988887764200112--355321234315652143
Q gi|254780916|r 238 VLEEPDALPLAVQGRIYNFIETGKIEFF--DSRGAIRLDVRLIFLTEK 283 (482)
Q Consensus 238 ~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~RiIa~t~~ 283 (482)
++||++.++...|..|+.+++++.+.-- |-....+..|-|||++|-
T Consensus 126 cIDEfdk~~~~d~saL~EAMEqqtVsIaKaGi~~tL~ar~sVlAaaNP 173 (327)
T pfam00493 126 CIDEFDKMNEEDRVAIHEAMEQQTISIAKAGIVATLNARCSVLAAANP 173 (327)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCEEEEECCCEEEEECCCCEEEEEECC
T ss_conf 850055588767999999998681776338538972587179985277
No 103
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=2e-10 Score=93.34 Aligned_cols=223 Identities=20% Similarity=0.260 Sum_probs=157.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCC----CCCEEE---EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 111222222222222222234----432048---8732777436799999984267543321012346554210024331
Q gi|254780916|r 140 DSLIAVSPAMIQVVDLARKAG----DCAIPI---MIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLF 212 (482)
Q Consensus 140 ~~LiG~S~~m~~v~~~i~~~a----~~~~~v---li~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lF 212 (482)
..++|+..++..|-+.|+++- ..+.|+ |+.|++|+||+-+|+++-..-......+|.+|++.+-+..--|.|.
T Consensus 491 ~rViGQd~AV~~v~~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLI 570 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLI 570 (786)
T ss_pred CCEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHH
T ss_conf 65017399999999999998569999998735788667886569999999999965997444554568777787799872
Q ss_pred CCCCCCCCCCCCCCCCCCCC----CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE---EEEECCCCC
Q ss_conf 12555532211100123446----67147516642001889998888776420011235532123431---565214332
Q gi|254780916|r 213 GDVDLQTKNSAQFLGKFIEA----NGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVR---LIFLTEKNL 285 (482)
Q Consensus 213 G~~~~~~~~~~~~~g~~~~a----~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R---iIa~t~~~L 285 (482)
|...|+-|-.. -|.+-+| --..++||||+...++++.-||++|++|+. .+.+.+++||| ||.+||.--
T Consensus 571 GaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrL---TD~~Gr~VdFrNtiIImTSN~Gs 645 (786)
T COG0542 571 GAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRL---TDGQGRTVDFRNTIIIMTSNAGS 645 (786)
T ss_pred CCCCCCCEECC--CCCHHHHHHCCCCEEEEECHHHHCCHHHHHHHHHHHCCCCE---ECCCCCEEECCEEEEEEECCCCH
T ss_conf 79998720065--54003766069986888412644088999999998467805---54899888430028998450265
Q ss_pred CCCC---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCCCC
Q ss_conf 1111---------------------112333799988654334467787744222255667776410112233--33211
Q gi|254780916|r 286 LPQV---------------------KSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIK--QISIS 342 (482)
Q Consensus 286 ~~~~---------------------~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~--~~~ls 342 (482)
..+. -...|++++.-|+..+ |..-||.+ +++..+++.++++...++... ...++
T Consensus 646 ~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~I-I~F~~L~~--~~l~~Iv~~~L~~l~~~L~~~~i~l~~s 722 (786)
T COG0542 646 EEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEI-IPFNPLSK--EVLERIVDLQLNRLAKRLAERGITLELS 722 (786)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCE-EECCCCCH--HHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 98975313432100467889999999853899898512617-85067998--9999999999999999998689559988
Q ss_pred CCCCCCCCCCCC--CCCHHHHHHHHHHHHH
Q ss_conf 111000122338--9868999999999987
Q gi|254780916|r 343 DKALSLLTKYPW--IDNVQELKNILLRAVI 370 (482)
Q Consensus 343 ~~a~~~L~~y~W--PGNvREL~n~i~r~~i 370 (482)
+++..+|...-+ ..--|-|+++|++-+.
T Consensus 723 ~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~ 752 (786)
T COG0542 723 DEAKDFLAEKGYDPEYGARPLRRAIQQEIE 752 (786)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 899999999646877673679999999998
No 104
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.12 E-value=3.8e-10 Score=91.34 Aligned_cols=204 Identities=20% Similarity=0.212 Sum_probs=133.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 11111112222222222222222344320488732777436799999984267543321012346554210024331125
Q gi|254780916|r 136 HCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDV 215 (482)
Q Consensus 136 ~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~ 215 (482)
-.....|+|....++++.+. .+-.+..+.|++||||+.+|+.|-... +.+|..+|...-...-+
T Consensus 26 ~vGQ~HLlg~~~~lrr~v~~-----~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~~gvkdl-------- 89 (436)
T COG2256 26 VVGQEHLLGEGKPLRRAVEA-----GHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVTSGVKDL-------- 89 (436)
T ss_pred HCCHHHHHCCCCHHHHHHHC-----CCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEECCCCCCHHHH--------
T ss_conf 55718661899438999964-----998605777899988889999998761---77669951523467999--------
Q ss_pred CCCCCCCCCCCCCCCCC------C-CCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 55532211100123446------6-7147516642001889998888776420011235532123431565214332111
Q gi|254780916|r 216 DLQTKNSAQFLGKFIEA------N-GGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQ 288 (482)
Q Consensus 216 ~~~~~~~~~~~g~~~~a------~-~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~ 288 (482)
...+++| + .-.||+||||++...-|.-||-++++|.+ -+|.+|+.|+.-.
T Consensus 90 ----------r~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~i-------------ilIGATTENPsF~ 146 (436)
T COG2256 90 ----------REIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTI-------------ILIGATTENPSFE 146 (436)
T ss_pred ----------HHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHHHCCCEE-------------EEEECCCCCCCEE
T ss_conf ----------99999999987258834998722533374456551033248868-------------9996267898714
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 11123337999886543344677877442222556677764101122333321111100012233898689999999999
Q gi|254780916|r 289 VKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRA 368 (482)
Q Consensus 289 ~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~ 368 (482)
+.... .-|-- .+.+-||- .+||..++..-+..-.+.++.....++++|++.|..+. -|..|-+=|.+|-+
T Consensus 147 ln~AL-----lSR~~--vf~lk~L~--~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s-~GD~R~aLN~LE~~ 216 (436)
T COG2256 147 LNPAL-----LSRAR--VFELKPLS--SEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLS-NGDARRALNLLELA 216 (436)
T ss_pred ECHHH-----HHHHH--EEEEECCC--HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf 03888-----61104--15651699--89999999999865413777655668889999999862-86199998899999
Q ss_pred HHHCCCC-CCCHHHHHHHHCC
Q ss_conf 8743898-1068895454212
Q gi|254780916|r 369 VIGLKDS-HLTEDRFVLLLSR 388 (482)
Q Consensus 369 ~i~~~~~-~i~~~~~~~~l~~ 388 (482)
+.+.... .+..+.+...+..
T Consensus 217 ~~~~~~~~~~~~~~l~~~l~~ 237 (436)
T COG2256 217 ALSAEPDEVLILELLEEILQR 237 (436)
T ss_pred HHHCCCCCCCCHHHHHHHHHH
T ss_conf 986277752479999999865
No 105
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.11 E-value=1.2e-10 Score=94.86 Aligned_cols=144 Identities=19% Similarity=0.200 Sum_probs=101.3
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC-----CCCCCCCC
Q ss_conf 2222222344320488732777436799999984267543321012346554210024331125555-----32211100
Q gi|254780916|r 152 VVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQ-----TKNSAQFL 226 (482)
Q Consensus 152 v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~-----~~~~~~~~ 226 (482)
+...+-.+..+..|||+.|++||||+++|+.+-..- +.+|+.|+| +.++..+.++|..... ++...-..
T Consensus 32 ~~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l---~~~~~~i~~---t~~l~p~d~~G~~~~~~~~~~~~~~~~~~ 105 (329)
T COG0714 32 VIELALLALLAGGHVLLEGPPGVGKTLLARALARAL---GLPFVRIQC---TPDLLPSDLLGTYAYAALLLEPGEFRFVP 105 (329)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEC---CCCCCHHHHCCHHHHHHHHCCCCEEEEEC
T ss_conf 999999999859977877989877799999999983---898189956---89988888205688876642577189846
Q ss_pred CCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 123446671475166420018899988887764200112355-32123431565214332111111233379998865
Q gi|254780916|r 227 GKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSR-GAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRIS 303 (482)
Q Consensus 227 g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~-~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~ 303 (482)
|-+-.+.++.||+|||...++..|.-||.+|++++++--|.. ...+..+.+|+++| ..+.-....+.+.++.|..
T Consensus 106 gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vt~~~~~~~~~~~~f~viaT~N--p~e~~g~~~l~eA~ldRf~ 181 (329)
T COG0714 106 GPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQN--PGEYEGTYPLPEALLDRFL 181 (329)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCEEEECCCCCCCCCCCCEEEEECC--CCCCCCCCCCCHHHHCCCE
T ss_conf 873345133899870345898899999999972689707966533799878998268--6765788789988881038
No 106
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=99.09 E-value=1.4e-10 Score=94.32 Aligned_cols=142 Identities=15% Similarity=0.115 Sum_probs=90.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCC-CCCCCC----CCCCCCC--CCCHHHH
Q ss_conf 11112222222222222222344320488732777436799999984267543-321012----3465542--1002433
Q gi|254780916|r 139 LDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAF-FPFFIV----NCGMIDQ--DKIEKFL 211 (482)
Q Consensus 139 ~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~-~~fi~v----~c~~~~~--~~~e~~l 211 (482)
|.+++|+..+- +.++-+|.-..+||+.|++|+||+++|+.|...-+--. ...+.+ ..+++.. .++...=
T Consensus 2 f~di~GQ~~ak----rAl~iAaaG~H~lLl~GpPG~GKTmlA~rl~~iLP~l~~~e~le~~~i~S~~g~~~~~~l~~~rP 77 (207)
T pfam01078 2 LADVKGQEQAK----RALEIAAAGGHNLLMIGPPGSGKTMLAKRLPGILPPLTEQEALEVTAIHSVAGLGGDGGLIRRRP 77 (207)
T ss_pred HHHHCCCHHHH----HHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 76863859999----99999854787589788998029999976301489987899887776423036877777445798
Q ss_pred HC--C----CCCCC-CCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCCEEEEECC
Q ss_conf 11--2----55553-2211100123446671475166420018899988887764200--11235532123431565214
Q gi|254780916|r 212 FG--D----VDLQT-KNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKI--EFFDSRGAIRLDVRLIFLTE 282 (482)
Q Consensus 212 FG--~----~~~~~-~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~--~~~g~~~~~~~~~RiIa~t~ 282 (482)
|- | ..+.. |...-+.|.+-.|++|.|||||+.+++..++..|...|+++++ .|.+..-..+.+|.+|+++|
T Consensus 78 fr~PHhs~s~~aliGGg~~~~PGeIslAH~GVLFLDE~~Ef~~~vle~LrqpLE~~~v~IsRa~~~~~~PA~f~LvaA~N 157 (207)
T pfam01078 78 FRAPHHSASAAALVGGGSIPRPGEISLAHNGVLFLDELPEFSRRVLESLRQPLEDGEITISRARAKVTFPARFQLVAAMN 157 (207)
T ss_pred CCCCCCCCCHHHCCCCCCCCCCCCEEECCCCEEEECCHHHCCHHHHHHHHHHHCCCCEEEEECCCEEEECCCEEEEEECC
T ss_conf 65788764363322688889997066636878884764653988999998766049489995675898604348888505
Q ss_pred CC
Q ss_conf 33
Q gi|254780916|r 283 KN 284 (482)
Q Consensus 283 ~~ 284 (482)
-=
T Consensus 158 PC 159 (207)
T pfam01078 158 PC 159 (207)
T ss_pred CC
T ss_conf 77
No 107
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.07 E-value=4e-10 Score=91.15 Aligned_cols=184 Identities=14% Similarity=0.207 Sum_probs=113.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC---CCCCCCEEE
Q ss_conf 32048873277743679999998426754332101234655421002433112555532211100123---446671475
Q gi|254780916|r 162 CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKF---IEANGGTIV 238 (482)
Q Consensus 162 ~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~---~~a~~Gtl~ 238 (482)
...-||+.|.+||||+++|+++-... +-||+.++.+.+ -+.++|... ..-...| +...--.||
T Consensus 258 ~PkGvLL~GpPG~GKtl~AKAvA~e~---~~p~l~l~~~~l-----~~~~vGesE------~~~r~~f~~A~~~aP~ilf 323 (491)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANEW---NLPLLRLDVGKL-----FGGIVGESE------SRMRQMIQLAETISPCILW 323 (491)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEHHHH-----HHHHCCHHH------HHHHHHHHHHHHHCCEEEE
T ss_conf 99879997999987899999998663---894699667997-----560067049------9999999999861985899
Q ss_pred ECCCCHH-H-----------HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC---CCCCCCHHHHHHHHHHHHH
Q ss_conf 1664200-1-----------88999888877642001123553212343156521433---2111111233379998865
Q gi|254780916|r 239 LEEPDAL-P-----------LAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKN---LLPQVKSHVFRKDLYYRIS 303 (482)
Q Consensus 239 l~ei~~L-~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~---L~~~~~~g~fr~dLy~rL~ 303 (482)
+|||+.+ + ..+...+|..+++ ....|=|||+||.. ..+++..|+|.+-+|
T Consensus 324 iDEidk~~~~~~~~~d~g~s~rv~~~~Lt~m~e-----------~~~~VfViattN~~~~L~pellR~GRFD~~~~---- 388 (491)
T CHL00195 324 IDEIDKAFSGLDSKGDSGTSNRVLATFITWLSE-----------KKSPVFVVATANNIDSLPLELLRKGRFDEIFF---- 388 (491)
T ss_pred EEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC-----------CCCCEEEEEECCCCCCCCHHHCCCCCCCEEEE----
T ss_conf 746545425888888872328999999998646-----------89976999958997558987708987770476----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--HCCCCCCCHHH
Q ss_conf 4334467787744222255667776410112233332111110001223389868999999999987--43898106889
Q gi|254780916|r 304 VFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVI--GLKDSHLTEDR 381 (482)
Q Consensus 304 ~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i--~~~~~~i~~~~ 381 (482)
|.+|...+|.+ +++-++.++... ....++-+.+.. ....|.| .|++++|..++. .+.+..++.+|
T Consensus 389 ---v~lP~~~~R~~----I~~ihl~~~~~~---~~~~~d~~~la~-~t~gfsG--AeIe~~v~~A~~~A~~~~r~~~~~d 455 (491)
T CHL00195 389 ---LDLPNLEEREL----IFKIHLKRFRPN---SWQNYDIEILSQ-LTNKFSG--AEIEQSIIEAMHHAFSEKREFTTED 455 (491)
T ss_pred ---CCCCCHHHHHH----HHHHHHHCCCCC---CCCCCCHHHHHH-HCCCCCH--HHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf ---48959899999----999998544788---755469999997-6859888--9999999999999987588665899
Q ss_pred HHHHHC
Q ss_conf 545421
Q gi|254780916|r 382 FVLLLS 387 (482)
Q Consensus 382 ~~~~l~ 387 (482)
+.....
T Consensus 456 l~~a~~ 461 (491)
T CHL00195 456 ICLALK 461 (491)
T ss_pred HHHHHH
T ss_conf 999998
No 108
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.05 E-value=1.3e-09 Score=87.53 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=106.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCC---------------
Q ss_conf 11111111222222222222222234432048873277743679999998426754332101234---------------
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNC--------------- 199 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c--------------- 199 (482)
.+.-+..++|+.+.=..+. +..+-..=..|||.|+.||||+++||+|+..-+-. .-|. +|
T Consensus 12 ~~~pf~aivGqd~lk~aL~--l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~--~~V~-gc~f~cdP~~P~~~c~~ 86 (423)
T COG1239 12 ENLPFTAIVGQDPLKLALG--LNAVDPQIGGALIAGEKGTAKSTLARALADLLPEI--EVVI-GCPFNCDPDDPEEMCDE 86 (423)
T ss_pred HCCCHHHHCCCHHHHHHHH--HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC--CEEC-CCCCCCCCCCHHHHHHH
T ss_conf 5166565437537778876--53026310426876688752779999999867963--3216-88788998870555199
Q ss_pred --------------------CCCCCCCCHHHHHCCCC---CCC-CCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf --------------------65542100243311255---553-221110012344667147516642001889998888
Q gi|254780916|r 200 --------------------GMIDQDKIEKFLFGDVD---LQT-KNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYN 255 (482)
Q Consensus 200 --------------------~~~~~~~~e~~lFG~~~---~~~-~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~ 255 (482)
-++|..--|..+-|..+ +.. |...-..|++.+||+|.||+|||..|+..+|.-||.
T Consensus 87 c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd 166 (423)
T COG1239 87 CRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLD 166 (423)
T ss_pred HHHHCCCCCCCCCCCEECCEECCCCCCCHHHHCCCCCHHHHHHCCCCCCCCCCHHHCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 98620232445422100312238876304330045679999726830027751100358879872334351899999999
Q ss_pred HHHHH--HCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 77642--0011235532123431565214332111111233379998865
Q gi|254780916|r 256 FIETG--KIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRIS 303 (482)
Q Consensus 256 ~l~~~--~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~ 303 (482)
++++| .+++-|-.-.-+++|=+|++.| ++ +|.+|+-|..|..
T Consensus 167 ~aaeG~n~vereGisi~hpa~fvligTmN--PE----eGeLrpqLlDRfg 210 (423)
T COG1239 167 VAAEGVNDVEREGISIRHPARFLLIGTMN--PE----EGELRPQLLDRFG 210 (423)
T ss_pred HHHHCCCEEEECCEEECCCCCEEEEEECC--CC----CCCCCHHHHHHHC
T ss_conf 99717740335750313676179996448--54----4663246675411
No 109
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.02 E-value=6.2e-10 Score=89.82 Aligned_cols=200 Identities=14% Similarity=0.162 Sum_probs=116.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC---CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 11111111222222222222222234---432048873277743679999998426754332101234655421002433
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAG---DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFL 211 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a---~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~l 211 (482)
....++.++|+......+...++..- ..-.+++++|++||||+.+||.|-+..+ .+|..++...+...
T Consensus 19 RP~~l~e~vGQehl~~~l~~~i~a~~~~~~~l~h~lf~GPPG~GKTTlAriiAk~~~---~~~~~~s~~~i~~~------ 89 (234)
T pfam05496 19 RPRRLDEYIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG---VNIRITSGPALEKP------ 89 (234)
T ss_pred CCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHC---CCEEEECCHHHHHH------
T ss_conf 989766606949999999999998874277766278878999988899999998408---75376142666438------
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCC-EEEECCCCHHHHHHHHHHHHHHHHHHCCC-CCCCCC------CCCCCEEEEECCC
Q ss_conf 112555532211100123446671-47516642001889998888776420011-235532------1234315652143
Q gi|254780916|r 212 FGDVDLQTKNSAQFLGKFIEANGG-TIVLEEPDALPLAVQGRIYNFIETGKIEF-FDSRGA------IRLDVRLIFLTEK 283 (482)
Q Consensus 212 FG~~~~~~~~~~~~~g~~~~a~~G-tl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~-~g~~~~------~~~~~RiIa~t~~ 283 (482)
.+-.+.+...+.+ .||+||||.+....|.-||-.++++.+.- +|.... ..-.|-+|.||+.
T Consensus 90 -----------~di~~~l~~~~~~~ILFIDEIHr~nK~qqd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P~FtLIgATTe 158 (234)
T pfam05496 90 -----------GDLAAILTNLEPGDVLFIDEIHRLNRAVEEILYPAMEDFRLDIVIGKGPSARSIRLDLPPFTLVGATTR 158 (234)
T ss_pred -----------HHHHHHHHHCCCCCEEEEECHHHCCHHHHHHCCCCCCCCEEEEEECCCCCCEEEECCCCCEEEEEECCC
T ss_conf -----------999999984589988999665435876887445533461699996367663246526897599852156
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 32111111233379998865433446778774422225566777641011223333211111000122338986899999
Q gi|254780916|r 284 NLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKN 363 (482)
Q Consensus 284 ~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n 363 (482)
+- .+..-|.-|.+. ..++-|| ..+||..++ ++.++..| ..++++|+..+..+. -|..|.--|
T Consensus 159 ~~-------~l~~pl~sR~~i-~~~l~~l--~~edl~~il----~r~~~~l~---i~i~~eal~~IA~~s-~Gd~R~ALn 220 (234)
T pfam05496 159 AG-------LLTSPLRDRFGI-VLRLEFY--SVEELEEIV----KRSARILG---VEIDEEGAAEIARRS-RGTPRIANR 220 (234)
T ss_pred CC-------CCCHHHHHHHHH-EEECCCC--CHHHHHHHH----HHHHHHCC---CCCCHHHHHHHHHHC-CCCHHHHHH
T ss_conf 66-------477779976211-2442468--999999999----99999839---995999999999977-998999989
Q ss_pred HHHHHHHHC
Q ss_conf 999998743
Q gi|254780916|r 364 ILLRAVIGL 372 (482)
Q Consensus 364 ~i~r~~i~~ 372 (482)
.++|++-.+
T Consensus 221 lLe~v~d~a 229 (234)
T pfam05496 221 LLRRVRDFA 229 (234)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 110
>pfam02954 HTH_8 Bacterial regulatory protein, Fis family.
Probab=99.00 E-value=5.3e-10 Score=90.31 Aligned_cols=42 Identities=45% Similarity=0.720 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 999999999999999828727899978489988999999981
Q gi|254780916|r 434 RLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREY 475 (482)
Q Consensus 434 ~l~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~~ 475 (482)
+++++|+.+|..||++|+||+++||+.|||||+|||+||++|
T Consensus 1 tl~~~Er~~I~~aL~~~~gn~~~aA~~LGisr~tL~~kmkky 42 (42)
T pfam02954 1 SLEEVEKELIEAALERTGGNKSKAARLLGISRRTLYRKLKKY 42 (42)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 989999999999999949979999999796999999999739
No 111
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.00 E-value=2.2e-09 Score=86.01 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=81.1
Q ss_pred HHHHHHHHHHC-C--CEEEEEC---C--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 99999999988-9--8899989---3--7999986089989999785469888999999998578983999926899999
Q gi|254780916|r 23 IKIIKDHVESY-G--YDVFIVN---V--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQTTQDNIKI 94 (482)
Q Consensus 23 ~~~l~~~L~~~-G--~~v~~a~---~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT~~~~~~~ 94 (482)
..-++.+|+.. | |.+..++ + +|+..+....+|++++|+.||++||+++++++++++|++.+|++|.|++...
T Consensus 3 ~~gi~sl~~~~~~~~~~l~vv~e~~~g~EAl~~~~~~~v~~~LmDi~mP~~dGL~~~~~L~r~~P~vriLVLTm~d~e~~ 82 (205)
T PRK11475 3 SIGIESLFDKFPGNPYKLHIFSSQSSFQDAMSRISFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIEAR 82 (205)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHH
T ss_conf 78899998418998348999505456999986288666438985389999766999999999789971899974768799
Q ss_pred HHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 998885-0574322222222222222222222
Q gi|254780916|r 95 LNCFLY-NRISKFFLNLVSRKQLCDSIICALR 125 (482)
Q Consensus 95 ~~~a~~-~g~~d~l~KP~~~~~L~~~i~~al~ 125 (482)
...++. .|+..|+.|-...+.|...+..+..
T Consensus 83 v~~aL~~aga~Gyl~K~~~~~eL~~Ai~~~~~ 114 (205)
T PRK11475 83 LIGSLSPSPLDGVLSKASTLEILQQELFLSLN 114 (205)
T ss_pred HHHHHHHHHCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 99999984166888567889999999999870
No 112
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.99 E-value=1e-09 Score=88.31 Aligned_cols=115 Identities=14% Similarity=0.200 Sum_probs=94.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHC-CCEEEE-ECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 883899869989999999999988-988999-893--7999986089989999785469888999999998578983999
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESY-GYDVFI-VNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIV 85 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~-G~~v~~-a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIi 85 (482)
+.+|+++||++..+..+..++... ++++.. +.+ .++..+....+|++++|+.||+++|+++...++...|..+|++
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fldI~~~~~~G~ela~~i~~~~~~~~Ivf 80 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGLRPDLVFLDIAMPDINGIELAARIRKGDPRPAIVF 80 (244)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEE
T ss_conf 98517714767679999999887442111133123031788876025776999723765244999998615698853999
Q ss_pred EECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 92689999999888505743222222222222222222222
Q gi|254780916|r 86 QTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALRE 126 (482)
Q Consensus 86 iT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~ 126 (482)
+|+|+ +.+..+....+.||+.||+...++...+....+.
T Consensus 81 vt~~~--~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 81 VTAHD--EYAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred EEEHH--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 98615--4323331334667742854268999999998887
No 113
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.98 E-value=1e-08 Score=81.22 Aligned_cols=253 Identities=17% Similarity=0.235 Sum_probs=153.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC---CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 11111111222222222222222234---432048873277743679999998426754332101234655421002433
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAG---DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFL 211 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a---~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~l 211 (482)
....++.++|+......+.-.+..+- .+--+||+.|++|.||+++|+.|-+.-. ..|...+..++...
T Consensus 20 RP~~l~efiGQ~~i~~~L~v~i~Aak~r~e~ldH~Ll~GPPGlGKTTLA~iiA~E~~---~~~~~tsGP~lek~------ 90 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG---VNIRITSGPALEKA------ 90 (328)
T ss_pred CCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHC---CCCEECCCCCCCCH------
T ss_conf 988576635959999999999999996499988057658899889999999999868---88156245001674------
Q ss_pred HCCCCCCCCCCCCCCCCCCCC-CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCC----CCC---CCCEEEEECCC
Q ss_conf 112555532211100123446-6714751664200188999888877642001123553----212---34315652143
Q gi|254780916|r 212 FGDVDLQTKNSAQFLGKFIEA-NGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRG----AIR---LDVRLIFLTEK 283 (482)
Q Consensus 212 FG~~~~~~~~~~~~~g~~~~a-~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~----~~~---~~~RiIa~t~~ 283 (482)
.+-.+.+-.. .|-.||+||||.|+..++.-|.-++++-++.-+=+.. .+. ..|-+|.||++
T Consensus 91 -----------~DL~~iLt~l~~~dvLFIDEIHRl~~~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~pFTLIGATTr 159 (328)
T PRK00080 91 -----------GDLAALLTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred -----------HHHHHHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHHCEEEEEECCCCCCEEEECCCCCEEEEECCCC
T ss_conf -----------789999960887876765065324888998857987752345786478653245558998347401367
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 321111112333799988654334467787744-----------222255667776410112233332111110001223
Q gi|254780916|r 284 NLLPQVKSHVFRKDLYYRISVFLINISTLRSRS-----------EDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKY 352 (482)
Q Consensus 284 ~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~-----------eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y 352 (482)
- |.. -.|||+|- +|+..+ +.+.|..++. .+++++...+..+
T Consensus 160 ~-------g~L--------------s~PLrdRFGi~~~l~~Y~~eeL~~I----i~rsa~~l~i---~i~~~~~~eIA~r 211 (328)
T PRK00080 160 A-------GLL--------------TSPLRDRFGIVQRLEFYTVEELEKI----VKRSARILGI---EIDEEGALEIARR 211 (328)
T ss_pred C-------CCC--------------CHHHHHHCCCEEEECCCCHHHHHHH----HHHHHHHHCC---CCCHHHHHHHHHH
T ss_conf 6-------657--------------7678975793366345899999999----9999998398---8789999999986
Q ss_pred CCCCCHHHHHHHHHHHH---HHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
Q ss_conf 38986899999999998---743898106889545421244543223432222223344432100000000112344454
Q gi|254780916|r 353 PWIDNVQELKNILLRAV---IGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQD 429 (482)
Q Consensus 353 ~WPGNvREL~n~i~r~~---i~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (482)
.- |.=|---+.++|.- .....+.|+.+.....+...+...
T Consensus 212 SR-GTPRiAnrLLrRvrDfa~v~~~~~I~~~~~~~aL~~l~ID~------------------------------------ 254 (328)
T PRK00080 212 SR-GTPRIANRLLRRVRDFAQVKGDGIITREIADKALDMLGVDE------------------------------------ 254 (328)
T ss_pred CC-CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCC------------------------------------
T ss_conf 38-98399999999999999983799659999999999569863------------------------------------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 325899999999999999982872---7899978489988999999981
Q gi|254780916|r 430 GEVRRLSDIEKEIIGLAMKLYRAQ---MSEVARRLGIGRSTLYRKIREY 475 (482)
Q Consensus 430 ~~~~~l~e~E~~~I~~aL~~~~Gn---~~~aA~~LGIsR~tL~rKlk~~ 475 (482)
.-|++.++.|+....+.++|. ..--|..+|..+.|+-..+.-|
T Consensus 255 ---~GLd~~Dr~~L~~l~~~f~GgPVGl~tLAa~lge~~~TIEdv~EPy 300 (328)
T PRK00080 255 ---LGLDEMDRKYLLTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPY 300 (328)
T ss_pred ---CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHH
T ss_conf ---4899889999999998529977009999999779821688875189
No 114
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.98 E-value=6.3e-09 Score=82.71 Aligned_cols=209 Identities=19% Similarity=0.204 Sum_probs=122.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHC--CCCCCCCCCCCCCCCCCCC----CCHHH
Q ss_conf 11111122222222222222223443204887327774367999999842--6754332101234655421----00243
Q gi|254780916|r 137 CALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES--GKRAFFPFFIVNCGMIDQD----KIEKF 210 (482)
Q Consensus 137 ~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~--s~r~~~~fi~v~c~~~~~~----~~e~~ 210 (482)
..+++++|+....+.+...+.. ..--.+|+.|++||||+.+|+++-.. +......+..+||+.+... ..+..
T Consensus 12 ~~~~dvvGq~~i~~~L~~~~~~--~~~phlLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~~i~~~~ 89 (337)
T PRK12402 12 SLFEDILGQESVVDHLSALAAS--GNLPHLVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKKYLVEDP 89 (337)
T ss_pred CCHHHHCCCHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEECCC
T ss_conf 9799803979999999999977--99876988892984899999999999679975678333116531135640010166
Q ss_pred ----HHCCCCCCCCCCC-CC-CCCC--------CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
Q ss_conf ----3112555532211-10-0123--------44667147516642001889998888776420011235532123431
Q gi|254780916|r 211 ----LFGDVDLQTKNSA-QF-LGKF--------IEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVR 276 (482)
Q Consensus 211 ----lFG~~~~~~~~~~-~~-~g~~--------~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 276 (482)
+++.. ...+... +. .-.+ ..+..-.++|||.+.|+...|..|++.|++- +.++|
T Consensus 90 ~~~~~~~~~-~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe~-----------~~~~~ 157 (337)
T PRK12402 90 RFAHFYDDP-KRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMERY-----------SETCR 157 (337)
T ss_pred CHHHHHCCH-HHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC-----------CCCEE
T ss_conf 423442015-332773789999999998614887788049997071317999999999887408-----------87669
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 56521433211111123337999886543344677877442222------556677764101122333321111100012
Q gi|254780916|r 277 LIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIP------WLVHFFLQSFCTKNAIKQISISDKALSLLT 350 (482)
Q Consensus 277 iIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~------~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~ 350 (482)
+|.+|+.. ..+ +||+|.|...+. .-+...|...+++.|. .+++++++.+.
T Consensus 158 fIl~t~~~-~~i--------------------i~tI~SRC~~i~F~~~s~~~i~~~L~~I~~~E~i---~~~~~~l~~ia 213 (337)
T PRK12402 158 FIFSTTQP-SKL--------------------IPPIRSRCLPLFFRPVPDDEIRSVLESIAAAEGV---EISDDGLDLIA 213 (337)
T ss_pred EEEECCCC-CCC--------------------CHHHHHHCEEEECCCCCHHHHHHHHHHHHHHCCC---CCCHHHHHHHH
T ss_conf 98723864-447--------------------5247762445435898999999999999998499---98999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 23389868999999999987438981068895454
Q gi|254780916|r 351 KYPWIDNVQELKNILLRAVIGLKDSHLTEDRFVLL 385 (482)
Q Consensus 351 ~y~WPGNvREL~n~i~r~~i~~~~~~i~~~~~~~~ 385 (482)
... -||+|.--|.++.+.. ..+..++...+...
T Consensus 214 ~~s-~GdlR~ain~Lq~~~~-~~~~~~~~~~~~~~ 246 (337)
T PRK12402 214 YYA-EGDLRKAILTLQLAAE-AEGEVTTEAALEEL 246 (337)
T ss_pred HHC-CCCHHHHHHHHHHHHH-HCCCCCCHHHHHHH
T ss_conf 986-9989999999999987-27997718899998
No 115
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.95 E-value=9e-09 Score=81.63 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=83.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCC---CCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 43204887327774367999999842675433210123---465542100243311255553221110012344667147
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVN---CGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTI 237 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~---c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl 237 (482)
..+.+||+.|++||||+.+-++++..++|+ -|++-. -++++.... ++..+|...-..|.+-.|++|.+
T Consensus 234 Rg~ihiLLvGDPGtgKSqlLk~~~~iaprs--vytsG~gsS~aGLTaav~-------rd~~~ge~~leaGALVlAD~Gic 304 (509)
T smart00350 234 RGDINILLLGDPGTAKSQLLKYVEKTAPRA--VYTTGKGSSAVGLTAAVT-------RDPETREFTLEGGALVLADNGVC 304 (509)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCE--EEEECCCCCCCCCEEEEE-------ECCCCCCEEECCCCEECCCCCEE
T ss_conf 154149984699823629999999858860--687344455577068999-------81788837872564120567547
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCEEEEECCC
Q ss_conf 5166420018899988887764200112--355321234315652143
Q gi|254780916|r 238 VLEEPDALPLAVQGRIYNFIETGKIEFF--DSRGAIRLDVRLIFLTEK 283 (482)
Q Consensus 238 ~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~RiIa~t~~ 283 (482)
++||.+.|+...+..|+.+++.+.+.-- |=.......+-|+||+|-
T Consensus 305 cIDEfdKm~~~dr~alhEaMEQQtisiaKaGi~~tL~aR~sVlAAaNP 352 (509)
T smart00350 305 CIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANP 352 (509)
T ss_pred EEEEHHHCCHHHHHHHHHHHHHCEEEEECCCEEEEEECCCEEEEEECC
T ss_conf 852132078778999999997487787437517998557359986556
No 116
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.91 E-value=3.9e-08 Score=77.11 Aligned_cols=209 Identities=16% Similarity=0.148 Sum_probs=129.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC----CCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 48873277743679999998426754332101234655421002433112555----53221110012344667147516
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDL----QTKNSAQFLGKFIEANGGTIVLE 240 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~----~~~~~~~~~g~~~~a~~Gtl~l~ 240 (482)
=|+|.|+.||+|+++++.+...-+ ...||+.+ |...-|..|||--+- .+|...-..|+|.+|++|.||+|
T Consensus 27 Gvlirg~~Gtakst~~r~l~~llp-~~~p~~~l-----Pl~~tedrl~G~lDi~~tL~~G~~v~~~GLLa~A~~gvLyvd 100 (584)
T PRK13406 27 GVVLRARAGPVRDRWLAALRALLP-AGTPLRRL-----PPGIADDRLLGGLDLAATLRAGRPVAERGLLAEADGGVLVLA 100 (584)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCC-CCCCEEEC-----CCCCCHHHHCCCCCHHHHHHCCCEECCCCHHHCCCCCEEEEE
T ss_conf 189977999579999999997568-99984656-----999974151471259999976898525753330369989985
Q ss_pred CCCHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64200188999888877642--0011235532123431565214332111111233379998865433446778774422
Q gi|254780916|r 241 EPDALPLAVQGRIYNFIETG--KIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSED 318 (482)
Q Consensus 241 ei~~L~~~~Q~~Ll~~l~~~--~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eD 318 (482)
|++.|+..+...|+.++..| .++|-|-....++.|-+|+..+...++. ...+-|-.||. +.+.+-.++.+-.+
T Consensus 101 evnll~d~lv~~Ll~a~~~G~~~vEReGiS~~~parf~LIa~deg~e~de----~~~~~l~dRla-~~vd~~~~~~~~~~ 175 (584)
T PRK13406 101 MAERLEPGTAARLAAALDAGEVAIERDGLALRMPARFGLVALDEGAEEDE----RAPAALADRLA-FHLDLDGLALRDTR 175 (584)
T ss_pred CHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC----CHHHHHHHHHC-CCCCHHHHHHHHHH
T ss_conf 14737888999999998548740025876635665058999467887643----11078887650-70681676666401
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH------HHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 2255667776410112233332111110001223389868999999------9999874389810688954542
Q gi|254780916|r 319 IPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNI------LLRAVIGLKDSHLTEDRFVLLL 386 (482)
Q Consensus 319 I~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~------i~r~~i~~~~~~i~~~~~~~~l 386 (482)
-......=+.. + +...+...++++.++.+...-.-.+|.=++.- .+-+..+.....++.+|+....
T Consensus 176 ~~~~~~~~i~~-A-r~~L~~V~i~d~~~~~l~~~a~~~gv~g~Ra~i~~~raArA~AAl~Gr~~V~~~Dl~~Aa 247 (584)
T PRK13406 176 EFPIDADDIAA-A-RARLAAVRVPPEAIEALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEADIALAA 247 (584)
T ss_pred HHHHHHHHHHH-H-HHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 11123689999-9-986786666999999999999983998620999999999999997499978899999999
No 117
>PRK08903 hypothetical protein; Validated
Probab=98.85 E-value=2.4e-08 Score=78.62 Aligned_cols=209 Identities=14% Similarity=0.093 Sum_probs=124.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2222111111112222222222222222344---3204887327774367999999842675433210123465542100
Q gi|254780916|r 131 SQENEHCALDSLIAVSPAMIQVVDLARKAGD---CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKI 207 (482)
Q Consensus 131 ~~~~~~~~~~~LiG~S~~m~~v~~~i~~~a~---~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~ 207 (482)
-......+++.++..+. ..+...+.+.+. ...+++|.|++|+||+++.+++.+.....+..-+.++|...+...
T Consensus 9 ~~l~~~~tfdnFv~g~n--~~~~~~l~~~~~~~~~~~~l~i~G~~G~GKTHLl~a~~~~~~~~~~~~~yl~~~~~~~~~- 85 (227)
T PRK08903 9 LGPPPPPTFDNFIAGEN--AELVTRLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAAASEGGKNARYLDPASPLLAF- 85 (227)
T ss_pred CCCCCCCCHHCCCCCCH--HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHH-
T ss_conf 99999876431557775--999999998874388786699989999988899999999998069974996511045777-
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 24331125555322111001234466714751664200188999888877642001123553212343156521433211
Q gi|254780916|r 208 EKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLP 287 (482)
Q Consensus 208 e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~ 287 (482)
+ | .+ +...+++|+|+.+....|..|+.++..-. . + -...++.+++.++..
T Consensus 86 ~---~----------------~~--~~d~l~iDDi~~i~~~~q~~lF~l~N~~~-~----~----~~~~ll~s~~~~p~~ 135 (227)
T PRK08903 86 D---F----------------DP--RAELYAVDDVERLDDAQQIALFNLFNRVR-A----H----GKTALLVAGPAAPLA 135 (227)
T ss_pred H---H----------------HH--CCCEEEEECCCCCCCHHHHHHHHHHHHHH-H----C----CCCEEEECCCCCHHH
T ss_conf 4---2----------------00--18989996411489569999999999999-7----2----994899718997120
Q ss_pred CCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 1111233379998865-433446778774422225566777641011223333211111000122338986899999999
Q gi|254780916|r 288 QVKSHVFRKDLYYRIS-VFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILL 366 (482)
Q Consensus 288 ~~~~g~fr~dLy~rL~-~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~ 366 (482)
+ .+++||--||+ +..+.++|+-+ . +....+.+.+...| ..++++++++|..+ .++|+|+|..++.
T Consensus 136 l----~~~~DL~SRl~~gl~~~i~~pdd-----e-~~~~iL~~~a~~rg---l~l~~~v~~yl~~r-~~R~~~~L~~~l~ 201 (227)
T PRK08903 136 L----DVREDLRTRLGWGLVYEVKPLSD-----E-DKIAALKAAAAERG---LQLADEVPDYLLTH-FRRDMPSLMALLD 201 (227)
T ss_pred C----CCCHHHHHHHHCCCEEEEECCCH-----H-HHHHHHHHHHHHCC---CCCCHHHHHHHHHH-HCCCHHHHHHHHH
T ss_conf 1----20089999993897389979799-----9-99999999999629---99988999999998-3478999999999
Q ss_pred HHHH--HCCCCCCCHHHHHHHH
Q ss_conf 9987--4389810688954542
Q gi|254780916|r 367 RAVI--GLKDSHLTEDRFVLLL 386 (482)
Q Consensus 367 r~~i--~~~~~~i~~~~~~~~l 386 (482)
++-. ...+..||..-+...+
T Consensus 202 ~Ld~~sl~~kr~iTi~lvkevL 223 (227)
T PRK08903 202 ALDRYSLEQKRAVTLPLLREML 223 (227)
T ss_pred HHHHHHHHCCCCCCHHHHHHHH
T ss_conf 9999999829999999999985
No 118
>PRK04195 replication factor C large subunit; Provisional
Probab=98.84 E-value=2e-08 Score=79.16 Aligned_cols=203 Identities=19% Similarity=0.247 Sum_probs=120.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC---CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCHHHHH
Q ss_conf 11111122222222222222223443---20488732777436799999984267543321012346554-210024331
Q gi|254780916|r 137 CALDSLIAVSPAMIQVVDLARKAGDC---AIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMID-QDKIEKFLF 212 (482)
Q Consensus 137 ~~~~~LiG~S~~m~~v~~~i~~~a~~---~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~-~~~~e~~lF 212 (482)
..+.+++|++...+.+..-+...... ..++|+.|++||||+++|++|-..- +-.++.+|++.-- .+.++.. .
T Consensus 11 k~~~divg~~~~v~~l~~Wl~~w~~g~~~~k~lLL~GPpGvGKTT~a~~lAk~~---g~~viElNASD~R~~~~I~~~-i 86 (403)
T PRK04195 11 KSLSDVVGNEKAKKQLREWIESWLKGKPPKKALLLYGPPGVGKTSLAHALANDY---GWEVIELNASDQRTKDVIERV-A 86 (403)
T ss_pred CCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEECCCCCCCHHHHHHH-H
T ss_conf 989998588999999999999987399657469988939987999999999984---998599771011478999999-9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHH----HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 12555532211100123446671475166420018899----98888776420011235532123431565214332111
Q gi|254780916|r 213 GDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQ----GRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQ 288 (482)
Q Consensus 213 G~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q----~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~ 288 (482)
+. +.+ ...++ ....-.++|||++.|+...| ..|++++++. ...||+++|-.....
T Consensus 87 ~~--~~~-----~~sl~-~~~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s-------------~~PiIli~Nd~~~~~ 145 (403)
T PRK04195 87 GE--AST-----SGSLF-GAKRKLILLDEVDGIHGNADRGGVRAILEIIKKA-------------KNPIILTANDPYDPS 145 (403)
T ss_pred HH--HHH-----CCCCC-CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC-------------CCEEEEEECCCCCCC
T ss_conf 98--760-----68877-8873499963434457244479999999998548-------------870899826845567
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 11123337999886543344677877442222556677764101122333321111100012233898689999999999
Q gi|254780916|r 289 VKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRA 368 (482)
Q Consensus 289 ~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~ 368 (482)
.. .++. .+..|.++|+... + +...|.+.|.+.|. .+++++++.+.... .|.+|..-|.++-+
T Consensus 146 ~~--~lrs------~c~~i~F~~~~~~--~----I~~~L~~I~~~Egi---~i~~~aL~~Ia~~s-~GDlR~aIN~LQ~~ 207 (403)
T PRK04195 146 LR--PLRN------ACLMIEFKRLSKR--S----IVPVLKRICRKEGI---ECEEEALREIAERS-GGDLRSAINDLQAI 207 (403)
T ss_pred HH--HHHH------HHHHCCCCCCCHH--H----HHHHHHHHHHHCCC---CCCHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf 17--7997------6612217994999--9----99999999997699---99999999999987-97399999999999
Q ss_pred HHHCCCCCCCHHHHHH
Q ss_conf 8743898106889545
Q gi|254780916|r 369 VIGLKDSHLTEDRFVL 384 (482)
Q Consensus 369 ~i~~~~~~i~~~~~~~ 384 (482)
. ..+..++.+++..
T Consensus 208 ~--~~~~~~~~~~~~~ 221 (403)
T PRK04195 208 A--EGGGRITLDDVKT 221 (403)
T ss_pred H--CCCCCCCHHHHHH
T ss_conf 7--4899775666664
No 119
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.84 E-value=2.2e-08 Score=78.82 Aligned_cols=208 Identities=14% Similarity=0.128 Sum_probs=122.3
Q ss_pred CCCCCCCCCCC-CCCC-CCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 22111111112-2222-222222222223443204887327774367999999842675433210123465542100243
Q gi|254780916|r 133 ENEHCALDSLI-AVSP-AMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKF 210 (482)
Q Consensus 133 ~~~~~~~~~Li-G~S~-~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~ 210 (482)
.+...+++.++ |.+. +...+...+.. ....+++|.|++|+||+++++++-+.....+...+.++|..+.....+
T Consensus 8 l~~~~tfdnFi~~~N~~~~~~l~~~~~~--~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~~~~~~-- 83 (226)
T TIGR03420 8 LPDDPTFDNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPE-- 83 (226)
T ss_pred CCCCCCHHCCCCCCHHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHH--
T ss_conf 9998763123658679999999987646--688869998999998899999999998626995799529998775399--
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHH--HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 311255553221110012344667147516642001--889998888776420011235532123431565214332111
Q gi|254780916|r 211 LFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALP--LAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQ 288 (482)
Q Consensus 211 lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~--~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~ 288 (482)
.+ ..++ +...|++|+|+.+. ...|..|+.++..-. ....+||.+++..+.++
T Consensus 84 ~l--------------~~l~--~~d~l~iDDi~~i~~~~~~e~~lF~l~N~~~----------~~~~~ilits~~~p~~l 137 (226)
T TIGR03420 84 VL--------------EGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVR----------EAGGRLLIAGRAAPAQL 137 (226)
T ss_pred HH--------------HHCC--CCCEEEEECHHHHCCCHHHHHHHHHHHHHHH----------HHCCEEEEECCCCHHHC
T ss_conf 99--------------7274--4899999663334378378999999999998----------65282898678882320
Q ss_pred CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 1112333799988654-334467787744222255667776410112233332111110001223389868999999999
Q gi|254780916|r 289 VKSHVFRKDLYYRISV-FLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLR 367 (482)
Q Consensus 289 ~~~g~fr~dLy~rL~~-~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r 367 (482)
- .+.+||--||+. ..++++++-+ +....+ +.+.+...| ..+++++++.|..+ .+.|+|+|++++.+
T Consensus 138 ~---~~l~dL~SRl~~~~~~~I~~pdd--~~~~~i----L~k~~~~r~---i~i~~~vi~yl~~r-~~R~~~~l~~~l~~ 204 (226)
T TIGR03420 138 P---LRLPDLRTRLAWGLVFQLPPLSD--EEKIAA----LQSRAARRG---LQLPDEVADYLLRH-GSRDMGSLMALLDA 204 (226)
T ss_pred C---CCHHHHHHHHHCCCEEECCCCCH--HHHHHH----HHHHHHHCC---CCCCHHHHHHHHHH-CCCCHHHHHHHHHH
T ss_conf 3---20177999996885685279999--999999----999999859---98899999999986-37989999999999
Q ss_pred HHH--HCCCCCCCHHHHH
Q ss_conf 987--4389810688954
Q gi|254780916|r 368 AVI--GLKDSHLTEDRFV 383 (482)
Q Consensus 368 ~~i--~~~~~~i~~~~~~ 383 (482)
+-. +..+..|+..-+.
T Consensus 205 Ld~~sl~~kr~ITi~l~k 222 (226)
T TIGR03420 205 LDRASLAAKRKITIPFVK 222 (226)
T ss_pred HHHHHHHHCCCCCHHHHH
T ss_conf 999999808999999999
No 120
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.82 E-value=2e-08 Score=79.12 Aligned_cols=217 Identities=18% Similarity=0.225 Sum_probs=127.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC----------CC-CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 22111111112222222222222222----------34-43204887327774367999999842675433210123465
Q gi|254780916|r 133 ENEHCALDSLIAVSPAMIQVVDLARK----------AG-DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGM 201 (482)
Q Consensus 133 ~~~~~~~~~LiG~S~~m~~v~~~i~~----------~a-~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~ 201 (482)
+.....++++-|-..+.+.+++.+.- +. ....-||+.|++||||+++|+++-..+ +.+|+.|+++.
T Consensus 125 e~P~v~~~dIGGl~~~k~el~E~velPl~~pe~f~~~Gi~pPkGvLLyGPPGtGKTllAkAvA~e~---~~~fi~v~~s~ 201 (390)
T PRK03992 125 ESPDVTYEDIGGLDEQIREVREAVELPLKNPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSE 201 (390)
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEHHH
T ss_conf 799998466149899999999999998659899997699999727868989997899999999874---88879966799
Q ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC---CCCEEEECCCCHHHH-----------HHHHHHHHHHHHHHCCCCCC
Q ss_conf 5421002433112555532211100123446---671475166420018-----------89998888776420011235
Q gi|254780916|r 202 IDQDKIEKFLFGDVDLQTKNSAQFLGKFIEA---NGGTIVLEEPDALPL-----------AVQGRIYNFIETGKIEFFDS 267 (482)
Q Consensus 202 ~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a---~~Gtl~l~ei~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~ 267 (482)
+-. ...|+. ...-.-+|+.| ..-.+|+|||+.+.. .+|.-+..+|.+= ++
T Consensus 202 l~s-----k~vGes------ek~vr~lF~~Ar~~aP~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~em-----DG 265 (390)
T PRK03992 202 LVQ-----KFIGEG------ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEM-----DG 265 (390)
T ss_pred HHH-----CCCCHH------HHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC-----CC
T ss_conf 752-----454179------99999999999970990897143256633567788862088999999999974-----48
Q ss_pred CCCCCCCCEEEEECCCC--CC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 53212343156521433--21-1111123337999886543344677877442222556677764101122333321111
Q gi|254780916|r 268 RGAIRLDVRLIFLTEKN--LL-PQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDK 344 (482)
Q Consensus 268 ~~~~~~~~RiIa~t~~~--L~-~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~ 344 (482)
-. ...++.||+|||.. |+ .+...|+|.. .+.|.+|.-.+|.+ | +..++.. .... ..++-+
T Consensus 266 ~~-~~~~V~VIaATNrpd~LDpAllRpGRFDr-------~I~iplPd~~~R~~-I---lki~~~~----~~l~-~dvdl~ 328 (390)
T PRK03992 266 FD-PRGNVKIIAATNRPDILDPALLRPGRFDR-------IIEVPLPDEEGRLE-I---LKIHTRK----MNLA-DDVDLE 328 (390)
T ss_pred CC-CCCCEEEEEECCCCHHCCHHHHCCCCCCE-------EEEECCCCHHHHHH-H---HHHHHCC----CCCC-CCCCHH
T ss_conf 77-77882799606981005977754776523-------88708949999999-9---9998479----9999-888999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHC---CCCCCCHHHHHHHHCC
Q ss_conf 1000122338986899999999998743---8981068895454212
Q gi|254780916|r 345 ALSLLTKYPWIDNVQELKNILLRAVIGL---KDSHLTEDRFVLLLSR 388 (482)
Q Consensus 345 a~~~L~~y~WPGNvREL~n~i~r~~i~~---~~~~i~~~~~~~~l~~ 388 (482)
.+..... .| +-.+|+++|..|.+.+ ....|+.+||...+.+
T Consensus 329 ~lA~~T~-G~--SGADI~~lc~EA~m~Air~~r~~i~~~Df~~Ai~k 372 (390)
T PRK03992 329 ELAELTE-GA--SGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEK 372 (390)
T ss_pred HHHHHCC-CC--CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 9997687-99--89999999999999999858986089999999999
No 121
>CHL00176 ftsH cell division protein; Validated
Probab=98.82 E-value=1.8e-08 Score=79.52 Aligned_cols=217 Identities=18% Similarity=0.245 Sum_probs=126.8
Q ss_pred CCCCCCCCCCCCCCCCCCCC---CCCCCCC-------CCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 22211111111222222222---2222222-------3443204887327774367999999842675433210123465
Q gi|254780916|r 132 QENEHCALDSLIAVSPAMIQ---VVDLARK-------AGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGM 201 (482)
Q Consensus 132 ~~~~~~~~~~LiG~S~~m~~---v~~~i~~-------~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~ 201 (482)
.......|.+..|...+-++ +.+.++. =|....-||+.|++||||+++||++-.. ++-||+.+..+.
T Consensus 169 ~~~~~vtF~DVaG~~eaK~el~EivdfLk~P~k~~~~Gak~PkGvLL~GpPGTGKTlLAkAvAgE---a~vpF~~~sgs~ 245 (631)
T CHL00176 169 EAKTGITFNDVAGVEEAKEELEEVVTFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE---AEVPFFSISGSE 245 (631)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCC---CCCCEEEEEHHH
T ss_conf 78999775322885899999999999835958876449968965898898998788999998565---588469988378
Q ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC---CEEEECCCCHHHHH----------H-HHHHHHHHHHHHCCCCCC
Q ss_conf 542100243311255553221110012344667---14751664200188----------9-998888776420011235
Q gi|254780916|r 202 IDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANG---GTIVLEEPDALPLA----------V-QGRIYNFIETGKIEFFDS 267 (482)
Q Consensus 202 ~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~---Gtl~l~ei~~L~~~----------~-Q~~Ll~~l~~~~~~~~g~ 267 (482)
+. +...|. ..++...+|++|.. -.+|+|||+.+... . ..-|-++|-+ +++
T Consensus 246 F~-----e~~vGv------ga~rVR~LF~~Ar~~aP~IiFIDEiDaig~~Rg~~~~gg~~e~e~tlnqLL~e-----mDG 309 (631)
T CHL00176 246 FV-----EMFVGV------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGVGGGNDEREQTLNQLLTE-----MDG 309 (631)
T ss_pred HH-----HHHCCH------HHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH-----HCC
T ss_conf 55-----642155------58999999999986399699987101201147898889850899999999998-----428
Q ss_pred CCCCCCCCEEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 53212343156521433--2-11111123337999886543344677877442222556677764101122333321111
Q gi|254780916|r 268 RGAIRLDVRLIFLTEKN--L-LPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDK 344 (482)
Q Consensus 268 ~~~~~~~~RiIa~t~~~--L-~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~ 344 (482)
-. ....+=+|+|||+. | ..++..|+|.. .+.|.+|....|.+ | +.+++... .+. ..++-+
T Consensus 310 f~-~~~gViViaATNrpd~LDpALlRPGRFDR-------~I~V~lPD~~gR~~-I---L~vh~k~~--~l~---~dvdl~ 372 (631)
T CHL00176 310 FE-GNKGVIVIAATNRIDILDAALLRPGRFDR-------QVTVSLPDFEGRLD-I---LKVHARNK--KLA---EDVSLE 372 (631)
T ss_pred CC-CCCCEEEEEECCCCCCCCHHHCCCCCCCE-------EEEECCCCHHHHHH-H---HHHHHHCC--CCC---CCHHHH
T ss_conf 88-78886999825885545686626887754-------99826989899999-9---99997078--666---530099
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHH---CCCCCCCHHHHHHHHC
Q ss_conf 100012233898689999999999874---3898106889545421
Q gi|254780916|r 345 ALSLLTKYPWIDNVQELKNILLRAVIG---LKDSHLTEDRFVLLLS 387 (482)
Q Consensus 345 a~~~L~~y~WPGNvREL~n~i~r~~i~---~~~~~i~~~~~~~~l~ 387 (482)
.++... ..| .--+|.|++..+.+. .....|+..|+...+.
T Consensus 373 ~iA~~T-~Gf--SGAdLanlvNEAal~AaR~~~~~it~~d~~~Aid 415 (631)
T CHL00176 373 LIARRT-PGF--SGADLANLLNEAAILAARRRKNQITMSEIDEAID 415 (631)
T ss_pred HHHHHC-CCC--CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 998626-998--6788876999999999984777647889999999
No 122
>CHL00181 cbbX CbbX; Provisional
Probab=98.82 E-value=1.8e-08 Score=79.55 Aligned_cols=166 Identities=18% Similarity=0.223 Sum_probs=96.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHH----HHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 4320488732777436799999----984267543321012346554210024331125555322111001234466714
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRF----IHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGT 236 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~----iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gt 236 (482)
....++++.|.+||||+++||. +|..+--+.+.|+.++.+.+-..- . |.|. ......+++|-||.
T Consensus 57 ~~s~h~vF~GnPGTGKTTVARl~a~il~~lG~L~~g~vve~~r~dLvg~y--------v-G~Ta--~kt~~~i~~a~GGV 125 (287)
T CHL00181 57 SPGLHMSFTGSPGTGKTTVALKMADILYRLGYIKKGHLITVTRDDLVGQY--------I-GHTA--PKTKEVLKKAMGGV 125 (287)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHCCCC--------C-CCCH--HHHHHHHHHCCCCE
T ss_conf 87653888789986799999999999998699558958995358841635--------3-5216--99999999645987
Q ss_pred EEECCCCHHH---------HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 7516642001---------8899988887764200112355321234315652143321111112333799988654334
Q gi|254780916|r 237 IVLEEPDALP---------LAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLI 307 (482)
Q Consensus 237 l~l~ei~~L~---------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i 307 (482)
||+||-..|. .+.=.-|+..+++.+ . ++=+|.+-..+ + ++ .|- +
T Consensus 126 LfIDEAY~L~~~~~~~dfg~eaidtLl~~me~~~--------~---~lvvI~AGY~~--e-M~--~fl-------~---- 178 (287)
T CHL00181 126 LFIDEAYYLYKPDNERDYGAEAIEILLQVMENQR--------D---DLVVIFAGYKD--R-MD--KFY-------E---- 178 (287)
T ss_pred EEEECHHHHCCCCCCCCCHHHHHHHHHHHHHHCC--------C---CEEEEEECCHH--H-HH--HHH-------H----
T ss_conf 9982446535788999837999999999987079--------9---88999846789--9-99--999-------8----
Q ss_pred HHHHHHHHH-----------HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-------CCCCCCHHHHHHHHHHHH
Q ss_conf 467787744-----------22225566777641011223333211111000122-------338986899999999998
Q gi|254780916|r 308 NISTLRSRS-----------EDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTK-------YPWIDNVQELKNILLRAV 369 (482)
Q Consensus 308 ~iPpLReR~-----------eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~-------y~WPGNvREL~n~i~r~~ 369 (482)
.=|-|+.|- +++..++..++.+. + ..+++++...+.. .+--||-|+.+|+++++.
T Consensus 179 ~NpGL~sRf~~~i~F~dYt~~EL~~I~~~~~~~~----~---~~l~~~a~~~l~~~~~~~~~~~~FGNaR~vrnl~e~a~ 251 (287)
T CHL00181 179 SNPGLSSRVANHVDFPDYTPEELLQIAKMMLEEQ----Q---YQLTPEAEKVLLDYIKRRMEQPLFANARSVRNAIDRAR 251 (287)
T ss_pred HCCCHHHHCCCEEECCCCCHHHHHHHHHHHHHHC----C---CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 5904787688723779859999999999999986----9---82587999999999998508999874899999999999
Q ss_pred HH
Q ss_conf 74
Q gi|254780916|r 370 IG 371 (482)
Q Consensus 370 i~ 371 (482)
..
T Consensus 252 ~~ 253 (287)
T CHL00181 252 MR 253 (287)
T ss_pred HH
T ss_conf 99
No 123
>COG2901 Fis Factor for inversion stimulation Fis, transcriptional activator [Transcription / DNA replication, recombination, and repair]
Probab=98.80 E-value=8.9e-09 Score=81.67 Aligned_cols=50 Identities=28% Similarity=0.498 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 54325899999999999999982872789997848998899999998188
Q gi|254780916|r 428 QDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREYNI 477 (482)
Q Consensus 428 ~~~~~~~l~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~~gi 477 (482)
.+.+...|.|+|+.++..+++.|+||+++||.+|||+|.||++|+|+||+
T Consensus 48 ~~lY~mVL~evE~PLL~~VM~~~~gNQtrAa~mLGinR~TLRKKLkqygl 97 (98)
T COG2901 48 NDLYEMVLAEVEQPLLDMVMQYTRGNQTRAALMLGINRGTLRKKLKKYGL 97 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf 34999999999738999999993264889999974328899999998267
No 124
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.80 E-value=2.1e-08 Score=79.09 Aligned_cols=201 Identities=19% Similarity=0.219 Sum_probs=131.8
Q ss_pred CCCEEE-EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC-CCCC--CCCCCE
Q ss_conf 432048-873277743679999998426754332101234655421002433112555532211100-1234--466714
Q gi|254780916|r 161 DCAIPI-MIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFL-GKFI--EANGGT 236 (482)
Q Consensus 161 ~~~~~v-li~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~-g~~~--~a~~Gt 236 (482)
....|| ++.|++|+||+.+|+.|-..-. .+|+.+.++++.+ |+|+-||+.-+-||-..++ -.+. ...|=.
T Consensus 346 ~~kg~IlclvGpPGvGKTSl~~sIA~al~---r~f~rislGGv~D---eaeirGHrrTYvgampGrii~~l~~a~~~nPv 419 (784)
T PRK10787 346 KIKGPILCLVGPPGVGKTSLGQSIAKATG---RKYVRMALGGVRD---EAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPL 419 (784)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC---CCEEEEECCCCCC---HHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 67787799646998772469999999858---9869980688788---88825643343443683899999974898856
Q ss_pred EEECCCCHHHHHHH----HHHHHHHH---HHHCCCCCCCCCCC---CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 75166420018899----98888776---42001123553212---3431565214332111111233379998865433
Q gi|254780916|r 237 IVLEEPDALPLAVQ----GRIYNFIE---TGKIEFFDSRGAIR---LDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFL 306 (482)
Q Consensus 237 l~l~ei~~L~~~~Q----~~Ll~~l~---~~~~~~~g~~~~~~---~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~ 306 (482)
++||||+.|+.+.+ ..||.+|+ +..|. +-.-..+ ++|-+||+.| ++. +
T Consensus 420 ~llDEiDK~~~~~~Gdp~salLEvLDpeQN~~F~--Dhyl~~~~DlS~v~Fi~TaN-~~~--i----------------- 477 (784)
T PRK10787 420 FLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFS--DHYLEVDYDLSDVMFVATSN-SMN--I----------------- 477 (784)
T ss_pred EEEHHHHHHCCCCCCCHHHHHHHHCCHHHCCCCC--CCEEECCCCHHHEEEEEECC-CCC--C-----------------
T ss_conf 6500355522455899889999845976556400--03220464522258997327-677--8-----------------
Q ss_pred HHHHHHHHHHHHHH----------HH-HHHHHHHHCCCCCCC--CCCCCCCCCCCC-CCCCCCCCHHHHHHHHHH----H
Q ss_conf 44677877442222----------55-667776410112233--332111110001-223389868999999999----9
Q gi|254780916|r 307 INISTLRSRSEDIP----------WL-VHFFLQSFCTKNAIK--QISISDKALSLL-TKYPWIDNVQELKNILLR----A 368 (482)
Q Consensus 307 i~iPpLReR~eDI~----------~L-~~~fl~~~~~~~~~~--~~~ls~~a~~~L-~~y~WPGNvREL~n~i~r----~ 368 (482)
-+||++|.|=|. .+ -+|.+.+..+++|.. ...|+++|+..+ ..|.+-.-||+|+..+.. +
T Consensus 478 --p~pLlDRmE~i~~~gYt~~eK~~Ia~~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~~ytrEaGvR~ler~i~~i~rk~ 555 (784)
T PRK10787 478 --PAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKA 555 (784)
T ss_pred --CHHHHHHEEEEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf --767763121554116767889999997453999998289965674399999998753365444251688999999999
Q ss_pred HH--H-CCC---CCCCHHHHHHHHCCCCC
Q ss_conf 87--4-389---81068895454212445
Q gi|254780916|r 369 VI--G-LKD---SHLTEDRFVLLLSREGK 391 (482)
Q Consensus 369 ~i--~-~~~---~~i~~~~~~~~l~~~~~ 391 (482)
+. . ... -.|+.+++...++....
T Consensus 556 ~~~~~~~~~~~~~~i~~~~l~~~lg~~~~ 584 (784)
T PRK10787 556 VKQLLLDKSLKHIEINGDNLHDYLGVQRF 584 (784)
T ss_pred HHHHHCCCCCCCEEECHHHHHHHHCCCCC
T ss_conf 99997078878558889999998299878
No 125
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804 Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous. Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (IPR010388 from INTERPRO). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis, (IPR011953 from INTERPRO, IPR006537 from INTERPRO, IPR006538 from INTERPRO) . The two pathways differ in the point of cobalt insertion during corrin ring formation . There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction . Cobaltochelatase shows similarities with magnesium chelatase, which is also a complex ATP-dependent enzyme made up of two separable components. However, unlike the situation in cobaltochelatase, one of these two components is membrane bound in magnesium chelatase . .
Probab=98.78 E-value=1e-08 Score=81.21 Aligned_cols=239 Identities=15% Similarity=0.155 Sum_probs=133.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC----CCCCCC---------CCCC------
Q ss_conf 111122222222222222223443204887327774367999999842675----433210---------1234------
Q gi|254780916|r 139 LDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKR----AFFPFF---------IVNC------ 199 (482)
Q Consensus 139 ~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r----~~~~fi---------~v~c------ 199 (482)
|..+||+-.-=+.+ .++-+-..=--|||.||-||||+++||.||+..+- ++.||- =-.|
T Consensus 3 F~AiVGQe~LK~AL--LL~Av~P~iGGVLirG~KGTAKSTaaR~L~~LLP~i~~v~gC~f~cdP~~P~~~C~~C~~~~~~ 80 (688)
T TIGR02442 3 FTAIVGQEDLKLAL--LLNAVNPRIGGVLIRGEKGTAKSTAARGLAALLPDIDVVAGCPFSCDPDDPEEWCEECRRKLEE 80 (688)
T ss_pred CCCCCCHHHHHHHH--HHEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 74221427986532--1002526637078877888627898884876160236640478887778870400676755520
Q ss_pred -------------CCCCCCCCHHHHHCCCC---CC-CCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHH--
Q ss_conf -------------65542100243311255---55-322111001234466714751664200188999888877642--
Q gi|254780916|r 200 -------------GMIDQDKIEKFLFGDVD---LQ-TKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETG-- 260 (482)
Q Consensus 200 -------------~~~~~~~~e~~lFG~~~---~~-~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~-- 260 (482)
=.||-.-=|..++|.-+ +. .|...=.+|+|.+||+|.||+|||.-|.-.+=.-||.+...|
T Consensus 81 ~G~~~~~~~~~~~V~LPlgATEDRVvG~LDi~~al~~G~~~FqPGLLA~AhrGiLYiDEVNLLdDhlVD~lLDaaA~G~n 160 (688)
T TIGR02442 81 QGTLPSEQRPVPFVNLPLGATEDRVVGSLDIERALKEGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVN 160 (688)
T ss_pred CCCCCCCCCCCEEEECCCCCCHHHHCCHHHHHHHHHHCHHHHCCCCHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCE
T ss_conf 47753135873588658775233221305489998718566078861754687167852001441477899998764800
Q ss_pred HCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH---HH------HHHHHHHHHHHHHHHC
Q ss_conf 00112355321234315652143321111112333799988654334467787---74------4222255667776410
Q gi|254780916|r 261 KIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLR---SR------SEDIPWLVHFFLQSFC 331 (482)
Q Consensus 261 ~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLR---eR------~eDI~~L~~~fl~~~~ 331 (482)
.++|=|=.-.-++ |+|-.-+-|+| +|.+|+-|..|..-. |.+-.-+ +| +.....==..|..+|.
T Consensus 161 ~VEREG~S~~Hpa--rf~L~GTMNPE----EG~LRPQLLDRFGL~-V~v~~~~d~~~R~Ev~~Rrl~~d~dP~~F~~~~~ 233 (688)
T TIGR02442 161 RVEREGLSVSHPA--RFVLIGTMNPE----EGDLRPQLLDRFGLC-VDVAASRDPEERVEVIRRRLAFDADPEAFAARWA 233 (688)
T ss_pred EEEECCCCHHCHH--HHHHHCCCCCC----HHHHCHHHHHHHHCE-EEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 6763574300114--55322037852----211022324244011-5502435866899999999754026778899999
Q ss_pred CCC------------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH------HHHHHHCCCCCCCHHHHHHHH
Q ss_conf 112------------2333321111100012233898689999999------999874389810688954542
Q gi|254780916|r 332 TKN------------AIKQISISDKALSLLTKYPWIDNVQELKNIL------LRAVIGLKDSHLTEDRFVLLL 386 (482)
Q Consensus 332 ~~~------------~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i------~r~~i~~~~~~i~~~~~~~~l 386 (482)
.+. =.+-..++++.+.++..----+||.=.+.-| +-++.+.....++.+||....
T Consensus 234 ~~~~~L~~~I~~AR~lLp~V~l~d~~~~~I~~lc~~~~V~GhRAdi~~~raArAlAAl~GR~~V~~eDv~~Aa 306 (688)
T TIGR02442 234 AEQEELRERIAAARSLLPSVRLSDSLLRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAA 306 (688)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEECHHHHHHHH
T ss_conf 9999999999999975477658889999999999972888525999999999999877288535377899999
No 126
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=98.78 E-value=2.4e-09 Score=85.69 Aligned_cols=177 Identities=22% Similarity=0.297 Sum_probs=122.3
Q ss_pred CCCEE-E-EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC------C
Q ss_conf 43204-8-87327774367999999842675433210123465542100243311255553221110012344------6
Q gi|254780916|r 161 DCAIP-I-MIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIE------A 232 (482)
Q Consensus 161 ~~~~~-v-li~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~------a 232 (482)
...-| | ++.|++|+||+.+|+.|=..= +..||.+..+++.++ +|+=||+.-+=||-. |++-+ .
T Consensus 446 ~~~GpqIlClvGPPGVGKTSlg~SIA~AL---nRkFvR~SlGG~~De---AEIrGHRRTYvGAMP---GriiQ~lk~~~t 516 (941)
T TIGR00763 446 KMKGPQILCLVGPPGVGKTSLGKSIAKAL---NRKFVRFSLGGVRDE---AEIRGHRRTYVGAMP---GRIIQGLKKAKT 516 (941)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHH---CCEEEEEEECCCEEH---HHCCCCCCCCCCCCH---HHHHHHHHHCCC
T ss_conf 88887678720726954222789999996---880499952672203---112786432034672---578999876041
Q ss_pred CCCEEEECCCCHHH--HHHHH----HHHHHH---HHHHCCCCCCCCCCCC---CCE--EEEECCCCCCCCCCHHHHHHHH
Q ss_conf 67147516642001--88999----888877---6420011235532123---431--5652143321111112333799
Q gi|254780916|r 233 NGGTIVLEEPDALP--LAVQG----RIYNFI---ETGKIEFFDSRGAIRL---DVR--LIFLTEKNLLPQVKSHVFRKDL 298 (482)
Q Consensus 233 ~~Gtl~l~ei~~L~--~~~Q~----~Ll~~l---~~~~~~~~g~~~~~~~---~~R--iIa~t~~~L~~~~~~g~fr~dL 298 (482)
.|=-+.||||+-++ -+.|. -||.+| |+..|.- =+-.+++ +|= +||+.|.
T Consensus 517 ~NPl~LlDEIDK~~~~~~~~GDPaSALLEvLDPEQN~~F~D--HYldvp~DLS~V~CyFi~TAN~--------------- 579 (941)
T TIGR00763 517 KNPLILLDEIDKIGLKSSFRGDPASALLEVLDPEQNNAFSD--HYLDVPFDLSKVLCYFIATANS--------------- 579 (941)
T ss_pred CCCEEEEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCC--CCCCCCCCHHHHHHHEEECCCC---------------
T ss_conf 58806862022001678865563788864128643604255--3002340042002100024475---------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHH-HHHHHHCCCCCCC--CCCCCCCCCCCCCCCCC-CCCHHHHHHH
Q ss_conf 9886543344677877442222----------5566-7776410112233--33211111000122338-9868999999
Q gi|254780916|r 299 YYRISVFLINISTLRSRSEDIP----------WLVH-FFLQSFCTKNAIK--QISISDKALSLLTKYPW-IDNVQELKNI 364 (482)
Q Consensus 299 y~rL~~~~i~iPpLReR~eDI~----------~L~~-~fl~~~~~~~~~~--~~~ls~~a~~~L~~y~W-PGNvREL~n~ 364 (482)
+.. |- +|||||.|=|. .+++ |++-+.-..+|.. ...|+++|+..|..|.- =--||.|+.-
T Consensus 580 ---~d~--IP-~PLLDRMEvI~lsGY~~~EK~~IA~~yLiP~~~~~~GL~~~~l~~~d~al~~lI~~YtREaGVRNL~r~ 653 (941)
T TIGR00763 580 ---IDT--IP-RPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKISDEALLLLIKYYTREAGVRNLERQ 653 (941)
T ss_pred ---CCC--CC-CCCCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf ---767--77-221374024523888767899999854713679870888132212689999999875132021338999
Q ss_pred HHHHH
Q ss_conf 99998
Q gi|254780916|r 365 LLRAV 369 (482)
Q Consensus 365 i~r~~ 369 (482)
|+.++
T Consensus 654 I~~i~ 658 (941)
T TIGR00763 654 IEKIC 658 (941)
T ss_pred HHHHH
T ss_conf 99999
No 127
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=98.77 E-value=4.6e-09 Score=83.72 Aligned_cols=219 Identities=17% Similarity=0.244 Sum_probs=136.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCC-------CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 22222222211111111222222222---22222223-------443204887327774367999999842675433210
Q gi|254780916|r 126 EGVVPSQENEHCALDSLIAVSPAMIQ---VVDLARKA-------GDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFF 195 (482)
Q Consensus 126 ~~~~~~~~~~~~~~~~LiG~S~~m~~---v~~~i~~~-------a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi 195 (482)
+.+...++.....|.+.-|..++=++ |.+.++.= |+...=||+.|++||||+|+|||+=-. ++=||.
T Consensus 45 ~Ak~~~~~~~kv~F~DVAG~dEAKeEl~EiVdFLK~P~kf~~LGaKIPKGVLLvGPPGTGKTLLAKAvAGE---A~VPFF 121 (505)
T TIGR01241 45 KAKLLNEEKPKVTFKDVAGIDEAKEELVEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE---AGVPFF 121 (505)
T ss_pred HHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCC---CCCCCE
T ss_conf 89873058981322344453233343331342226963798727889871473178784246788752025---889624
Q ss_pred CCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC---CEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC--CC
Q ss_conf 123465542100243311255553221110012344667---1475166420018899988887764200112355--32
Q gi|254780916|r 196 IVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANG---GTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSR--GA 270 (482)
Q Consensus 196 ~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~---Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~--~~ 270 (482)
+|.-|.+ -+.+-|- ..++..-+|++|.. ..+|+|||+.-..+=+ .-.-.|+| ++
T Consensus 122 ~iSGSdF-----VEMFVGV------GASRVRDLFeqAK~nAPCIIFIDEIDAVGr~RG----------aG~lGGGnDERE 180 (505)
T TIGR01241 122 SISGSDF-----VEMFVGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRG----------AGELGGGNDERE 180 (505)
T ss_pred EECCCCE-----EECCCCC------CCEEHHHHHHHHHHHCCCEEEEECHHHCCCCCC----------CCCCCCCCCHHH
T ss_conf 7407610-----1112056------400014457999971897056401000033356----------436676541355
Q ss_pred CCC--------------CCEEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 123--------------43156521433--2-111111233379998865433446778774422225566777641011
Q gi|254780916|r 271 IRL--------------DVRLIFLTEKN--L-LPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTK 333 (482)
Q Consensus 271 ~~~--------------~~RiIa~t~~~--L-~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~ 333 (482)
.+. .|=||||||++ | ..|+.-|+|++ .+.|..|-++.|.+ | |+=++++
T Consensus 181 QTLNQLLVEMDGF~~~~gvIv~AATNRPDvLD~ALLRPGRFDR-------Qv~V~~PD~~GR~~-I-------L~VH~~~ 245 (505)
T TIGR01241 181 QTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDR-------QVVVDLPDIKGREE-I-------LKVHAKN 245 (505)
T ss_pred HHHHHHHEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC-------EEECCCCCHHHHHH-H-------HHHHHCC
T ss_conf 4332331331785898857998504884116510068787445-------13458887467899-9-------9998548
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHH-HC--CCCCCCHHHHHHHHCC
Q ss_conf 223333211111000122338986-8999999999987-43--8981068895454212
Q gi|254780916|r 334 NAIKQISISDKALSLLTKYPWIDN-VQELKNILLRAVI-GL--KDSHLTEDRFVLLLSR 388 (482)
Q Consensus 334 ~~~~~~~ls~~a~~~L~~y~WPGN-vREL~n~i~r~~i-~~--~~~~i~~~~~~~~l~~ 388 (482)
.. ++++.--.-.+--=||= =-+|.|+|=-|.+ .+ ....|+..|+..+..+
T Consensus 246 ~k-----La~~vdL~~~Ar~TPGfSGADLaNl~NEAALlAAR~n~~~i~~~~~eeA~Dr 299 (505)
T TIGR01241 246 KK-----LAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAVDR 299 (505)
T ss_pred CC-----CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHH
T ss_conf 89-----9702477999701568767889999999999986179865628889878776
No 128
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.3e-08 Score=77.63 Aligned_cols=226 Identities=18% Similarity=0.204 Sum_probs=138.1
Q ss_pred CCCCCEEEEEEC----CCCCHHHHHHHHHHHC------CCC-CCCCCCCC---CCCCC--CCCCCHHHHHCCC--CCC--
Q ss_conf 344320488732----7774367999999842------675-43321012---34655--4210024331125--555--
Q gi|254780916|r 159 AGDCAIPIMIQG----EFGVGKKRLSRFIHES------GKR-AFFPFFIV---NCGMI--DQDKIEKFLFGDV--DLQ-- 218 (482)
Q Consensus 159 ~a~~~~~vli~G----e~GtGK~~~A~~iH~~------s~r-~~~~fi~v---~c~~~--~~~~~e~~lFG~~--~~~-- 218 (482)
+......+...+ ..|.++...++.+-.. +.. ...-|+.. +-+.+ ....-.+.|||.. +.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG 206 (647)
T COG1067 127 LGPIEQQIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPKNFVELSPLDGAPVVFATGAIADQLLGSVRHDPYQG 206 (647)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCHHHCCEEEEECCCCC
T ss_conf 22466666540455346216778998888765312531033304556540235589679668777465361277768887
Q ss_pred ----CCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC----------CCCCCCCEEEEECCCC
Q ss_conf ----32211100123446671475166420018899988887764200112355----------3212343156521433
Q gi|254780916|r 219 ----TKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSR----------GAIRLDVRLIFLTEKN 284 (482)
Q Consensus 219 ----~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~----------~~~~~~~RiIa~t~~~ 284 (482)
|+-..-+.|.+.+||||.||+|+|..|+...|-++|..++++++...|+. .++++|+.+|.+-+.+
T Consensus 207 ~l~~~~~~~i~pGaVHkAngGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~ 286 (647)
T COG1067 207 GLGTTGHIRVKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNRE 286 (647)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHH
T ss_conf 66788864236761101258479997566328398999999998244566576740248615788855654899408899
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC---------C
Q ss_conf -211111123337999886543344677877442222556677764101122333321111100012233---------8
Q gi|254780916|r 285 -LLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYP---------W 354 (482)
Q Consensus 285 -L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~---------W 354 (482)
+..+-..-.+|-++|---..+.=.+| ...+.-..+++.|.+..++..+.+ .++.+|.+.|..|- .
T Consensus 287 ~l~~l~~~~~~r~~g~~y~ae~~~~m~---~~~~nr~k~~~~~~q~v~~d~~ip--~~~~~Av~~li~~a~R~Ag~~~~L 361 (647)
T COG1067 287 DLEDLHEPDRSRIEGFGYEAEFEDTMP---ITDANRSKLVQFYVQELARDGNIP--HLDKDAVEELIREAARRAGDQNKL 361 (647)
T ss_pred HHHHHCCCCHHHHHHCCEEEEECCCCC---CCHHHHHHHHHHHHHHHHHCCCCC--CCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 997655347778840556899768889---986899999999999998628999--888899999999999861656502
Q ss_pred CCCHHHHHHHHHHHHHHCCC---CCCCHHHHHHHHCCC
Q ss_conf 98689999999999874389---810688954542124
Q gi|254780916|r 355 IDNVQELKNILLRAVIGLKD---SHLTEDRFVLLLSRE 389 (482)
Q Consensus 355 PGNvREL~n~i~r~~i~~~~---~~i~~~~~~~~l~~~ 389 (482)
+=+.|+|.|+++-+...+.. ..|+.+|+...+.+.
T Consensus 362 tl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~ 399 (647)
T COG1067 362 TLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQKR 399 (647)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 14899999999986688853786647699999999874
No 129
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=98.70 E-value=4.5e-08 Score=76.69 Aligned_cols=241 Identities=18% Similarity=0.242 Sum_probs=134.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC----CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 111112222222222222222344----3204887327774367999999842675433210123465542100243311
Q gi|254780916|r 138 ALDSLIAVSPAMIQVVDLARKAGD----CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG 213 (482)
Q Consensus 138 ~~~~LiG~S~~m~~v~~~i~~~a~----~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG 213 (482)
.+.+++|+-..-+++.=.|+ +|+ +=-+||+.|++|-||+++|+-|=+ . ..+||--.+.-.+|
T Consensus 2 ~L~eFiGQ~~vk~~L~l~I~-AAk~R~e~LDH~LL~GPPGLGKTTLA~IiA~------E--mg~~l~iTsGP~L~----- 67 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIE-AAKMRQEALDHLLLYGPPGLGKTTLAHIIAN------E--MGVNLKITSGPALE----- 67 (305)
T ss_pred CCHHCCCCHHHHHHHHHHHH-HHHHCCCCCCCEEEECCCCCCHHHHHHHHHH------H--HCCCCEEEECCCCC-----
T ss_conf 80110582889999999999-9982489734166317568746789999999------8--38932674067554-----
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCC-C---CCCCCCC---CCEEEEECCCCC
Q ss_conf 25555322111001234-46671475166420018899988887764200112-3---5532123---431565214332
Q gi|254780916|r 214 DVDLQTKNSAQFLGKFI-EANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFF-D---SRGAIRL---DVRLIFLTEKNL 285 (482)
Q Consensus 214 ~~~~~~~~~~~~~g~~~-~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~-g---~~~~~~~---~~RiIa~t~~~L 285 (482)
-..+-.|.+- .-.|-.||+||||.|++.+=.-|.=++|+=+..=+ | +.+.++. .|-+|-||++.
T Consensus 68 -------kPgDlaaiLt~L~~gDVLFIDEIHRL~p~~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~ldLpPFTLvGATTR~- 139 (305)
T TIGR00635 68 -------KPGDLAAILTNLEEGDVLFIDEIHRLSPAIEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA- 139 (305)
T ss_pred -------CHHHHHHHHHHCCCCCEEECCHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCC-
T ss_conf -------757899999705689631012565048334531053001217877871289852576068694420000347-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-----
Q ss_conf 11111123337999886543344677877442222556-------677764101122333321111100012233-----
Q gi|254780916|r 286 LPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLV-------HFFLQSFCTKNAIKQISISDKALSLLTKYP----- 353 (482)
Q Consensus 286 ~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~-------~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~----- 353 (482)
|..- -|||+|-.=+..|= ...+.+.+..++. .+++++...+...+
T Consensus 140 ------G~lt--------------~PLrdRFG~~~rl~fY~~~EL~~Iv~R~A~~L~~---ei~~~~a~~IArrSRGTPR 196 (305)
T TIGR00635 140 ------GMLT--------------SPLRDRFGIILRLEFYTPEELAEIVSRSAGLLNI---EIEQEAALEIARRSRGTPR 196 (305)
T ss_pred ------CCCC--------------CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHCCCCHH
T ss_conf ------7410--------------3133454474540268987899998753344143---0077899999875478637
Q ss_pred -------CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCC
Q ss_conf -------8986899999999998743898106889545421244543223432222223344432100000000112344
Q gi|254780916|r 354 -------WIDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAI 426 (482)
Q Consensus 354 -------WPGNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (482)
| ||..-.| ..++.|+.+-....+.. .
T Consensus 197 IAnRLLRR---VRDfA~V-------~~~~~I~~~i~~~AL~~-------------------------------------L 229 (305)
T TIGR00635 197 IANRLLRR---VRDFAQV-------RGQGVITRDIALKALEM-------------------------------------L 229 (305)
T ss_pred HHHHHHHH---HHHHHHH-------HCCCCCCHHHHHHHHHH-------------------------------------H
T ss_conf 88877676---6448887-------26787388999999886-------------------------------------2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHCCCHHHHHHHH
Q ss_conf 454325899999999999999982872---7899978489988999999
Q gi|254780916|r 427 GQDGEVRRLSDIEKEIIGLAMKLYRAQ---MSEVARRLGIGRSTLYRKI 472 (482)
Q Consensus 427 ~~~~~~~~l~e~E~~~I~~aL~~~~Gn---~~~aA~~LGIsR~tL~rKl 472 (482)
. -+..=|+++.++++....++|+|- ..--|-.||+.+.|+-.+.
T Consensus 230 ~--iD~~GLd~~D~~~L~~li~~f~GGPVGl~tlA~a~GEd~~TiEdv~ 276 (305)
T TIGR00635 230 D--IDELGLDEIDRKLLSVLIEKFQGGPVGLDTLAAALGEDADTIEDVY 276 (305)
T ss_pred C--CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHCCC
T ss_conf 5--3330057998999999998628985238989988557511142034
No 130
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=98.69 E-value=3.2e-08 Score=77.73 Aligned_cols=158 Identities=19% Similarity=0.243 Sum_probs=110.7
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCC--CC
Q ss_conf 2222222222222234432048873277743679999998426754332101234655421002433112555532--21
Q gi|254780916|r 145 VSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTK--NS 222 (482)
Q Consensus 145 ~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~--~~ 222 (482)
+.+++++|.....+.-++.-||.+.|++||||+.+|..+=.. .+.|-+-++. +.++-.+-|-|...+.+. ..
T Consensus 3 ~t~~v~~v~~R~l~yL~~G~PvHl~GPaG~GKT~LA~hvA~~---r~RPV~l~~G---d~eL~~~DLvG~~~g~~~~kv~ 76 (265)
T TIGR02640 3 ETDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARK---RDRPVVLING---DAELTTSDLVGSYAGYTRKKVV 76 (265)
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH---CCCCEEEEEC---CCCCCCCCCCCCCCCCEEEEEE
T ss_conf 772379999987663227886674478885568999999973---6896899865---8232654423154675222232
Q ss_pred CC---CC--------------CCCCCCCCC-EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC-----CCCCCCCEEEE
Q ss_conf 11---00--------------123446671-475166420018899988887764200112355-----32123431565
Q gi|254780916|r 223 AQ---FL--------------GKFIEANGG-TIVLEEPDALPLAVQGRIYNFIETGKIEFFDSR-----GAIRLDVRLIF 279 (482)
Q Consensus 223 ~~---~~--------------g~~~~a~~G-tl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~-----~~~~~~~RiIa 279 (482)
.+ +. .+...+.+| ||+-||=.+=-|..-.=||.++|||-..-.|.. -.++-+||+|.
T Consensus 77 DqfihnV~K~~d~~~~~W~D~rLt~Av~eG~TLVYdEF~RskP~~nNVLLSvlEE~vL~LPg~~~~~~Yv~VhP~FR~If 156 (265)
T TIGR02640 77 DQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVLEEGVLELPGKRGESRYVDVHPEFRVIF 156 (265)
T ss_pred ECCEEEEECCCCCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEE
T ss_conf 01211134251220026678357899756972766475788620456567555523215888787787225788702463
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2143321111112333799988654334467
Q gi|254780916|r 280 LTEKNLLPQVKSHVFRKDLYYRISVFLINIS 310 (482)
Q Consensus 280 ~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iP 310 (482)
+||.. +-..=..=..-|..||-++.+.-|
T Consensus 157 TSNp~--EYAGVh~~QDALlDRL~ti~~D~~ 185 (265)
T TIGR02640 157 TSNPV--EYAGVHETQDALLDRLVTISMDYP 185 (265)
T ss_pred CCCCC--CCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 14870--105767716677664400457854
No 131
>PRK05642 DNA replication initiation factor; Validated
Probab=98.68 E-value=1.1e-07 Score=73.85 Aligned_cols=210 Identities=13% Similarity=0.119 Sum_probs=124.6
Q ss_pred CCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 222211111111222-2-222222222222344-3204887327774367999999842675433210123465542100
Q gi|254780916|r 131 SQENEHCALDSLIAV-S-PAMIQVVDLARKAGD-CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKI 207 (482)
Q Consensus 131 ~~~~~~~~~~~LiG~-S-~~m~~v~~~i~~~a~-~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~ 207 (482)
-..+...+|+.++.. + .+...+...+..... ...++.|.|++|+||+++.+++-..-...+.+.+.++|..+....
T Consensus 10 ~~l~~~~tfdnFi~g~N~~a~~~~~~l~~~~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~~~~~~~- 88 (234)
T PRK05642 10 VRLRDDATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG- 88 (234)
T ss_pred CCCCCCCCHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH-
T ss_conf 9999977730357187599999999987606787788389988999988999999999998079967997899987544-
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHH--HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 243311255553221110012344667147516642001--889998888776420011235532123431565214332
Q gi|254780916|r 208 EKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALP--LAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNL 285 (482)
Q Consensus 208 e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~--~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L 285 (482)
.++| -.++.+ ..+++|+|+.++ ...|..|+.++..- .....++|.+++..+
T Consensus 89 -~~~~--------------~~l~~~--d~l~IDDi~~i~g~~~~e~~lF~l~N~~----------~~~~~~llits~~~P 141 (234)
T PRK05642 89 -PELL--------------DNLEQY--ELVCIDDLDVIAGKADWEEALFHLFNRL----------RDSGRRLLLAASKSP 141 (234)
T ss_pred -HHHH--------------HHHHHC--CEEEEECHHHHCCCHHHHHHHHHHHHHH----------HHCCCEEEEECCCCH
T ss_conf -9998--------------624227--9898936455468859999999999999----------983995999578795
Q ss_pred CCCCCHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 111111233379998865-4334467787--7442222556677764101122333321111100012233898689999
Q gi|254780916|r 286 LPQVKSHVFRKDLYYRIS-VFLINISTLR--SRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELK 362 (482)
Q Consensus 286 ~~~~~~g~fr~dLy~rL~-~~~i~iPpLR--eR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~ 362 (482)
.++- ...+||=-||+ +..++++|+- +|.. - +.+.+...| ..++++++++|.++ ++.|+++|.
T Consensus 142 ~~l~---~~l~DL~SRl~~~~~~~i~~l~d~~~~~-------i-L~~~a~~rg---i~l~~~v~~yl~~r-~~R~~~~L~ 206 (234)
T PRK05642 142 RELP---VKLPDLKSRLTLALVFQMRGLSDEDKLR-------A-LQLRASRRG---LHLTDEVGHFILTR-GTRSMSALF 206 (234)
T ss_pred HHHC---CCHHHHHHHHHCCCEEEECCCCHHHHHH-------H-HHHHHHHCC---CCCCHHHHHHHHHH-CCCCHHHHH
T ss_conf 5523---0016799999578127514899899999-------9-999977546---89998999999997-358899999
Q ss_pred HHHHHHHH--HCCCCCCCHHHHH
Q ss_conf 99999987--4389810688954
Q gi|254780916|r 363 NILLRAVI--GLKDSHLTEDRFV 383 (482)
Q Consensus 363 n~i~r~~i--~~~~~~i~~~~~~ 383 (482)
+++.++-. +.....||..-+.
T Consensus 207 ~~l~~Ld~~sl~~kr~iTiplvk 229 (234)
T PRK05642 207 DLLERLDQASLQAQRKLTIPFLK 229 (234)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 99999999999838999999999
No 132
>KOG0730 consensus
Probab=98.68 E-value=2.6e-08 Score=78.32 Aligned_cols=175 Identities=18% Similarity=0.222 Sum_probs=108.5
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC---CCCCEE
Q ss_conf 43204887327774367999999842675433210123465542100243311255553221110012344---667147
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIE---ANGGTI 237 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~---a~~Gtl 237 (482)
+-..-||+.|++||||+++|++|-+.+ ..+|+.|.|. + +-|..+|+....-. -.|.+ +.--.+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~---~~nFlsvkgp----E-L~sk~vGeSEr~ir------~iF~kAR~~aP~Ii 531 (693)
T KOG0730 466 SPPKGVLLYGPPGCGKTLLAKALANEA---GMNFLSVKGP----E-LFSKYVGESERAIR------EVFRKARQVAPCII 531 (693)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEECCCH----H-HHHHHCCCHHHHHH------HHHHHHHHCCCEEE
T ss_conf 887547777899862478999986463---5872641578----9-98775182589999------99999862698377
Q ss_pred EECCCCHHHHHH-------HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC---CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 516642001889-------998888776420011235532123431565214332---1111112333799988654334
Q gi|254780916|r 238 VLEEPDALPLAV-------QGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNL---LPQVKSHVFRKDLYYRISVFLI 307 (482)
Q Consensus 238 ~l~ei~~L~~~~-------Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L---~~~~~~g~fr~dLy~rL~~~~i 307 (482)
|||||+.+..+= +.++|..|-+- +++- ...-+|=|||+||++. ..++.-|+|.+=+| |
T Consensus 532 FfDEiDsi~~~R~g~~~~v~~RVlsqLLtE----mDG~-e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiy-------V 599 (693)
T KOG0730 532 FFDEIDALAGSRGGSSSGVTDRVLSQLLTE----MDGL-EALKNVLVIAATNRPDMIDPALLRPGRLDRIIY-------V 599 (693)
T ss_pred EHHHHHHHHHCCCCCCCCHHHHHHHHHHHH----CCCC-CCCCCEEEEECCCCHHHCCHHHCCCCCCCEEEE-------E
T ss_conf 446666666304787551489999999987----0041-014708999505881012697759865330575-------1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCC--CCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 4677877442222556677764101122333321111-1000122--3389868999999999987438981
Q gi|254780916|r 308 NISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDK-ALSLLTK--YPWIDNVQELKNILLRAVIGLKDSH 376 (482)
Q Consensus 308 ~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~-a~~~L~~--y~WPGNvREL~n~i~r~~i~~~~~~ 376 (482)
-+|-+.-|.+ | ++...++.. ++++ -++.|.. --+. -+||.++|++|...+-...
T Consensus 600 plPD~~aR~~-I-------lk~~~kkmp-----~~~~vdl~~La~~T~g~S--GAel~~lCq~A~~~a~~e~ 656 (693)
T KOG0730 600 PLPDLEARLE-I-------LKQCAKKMP-----FSEDVDLEELAQATEGYS--GAEIVAVCQEAALLALRES 656 (693)
T ss_pred CCCCHHHHHH-H-------HHHHHHCCC-----CCCCCCHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHH
T ss_conf 5834788999-9-------999973399-----986556999999854677--3899999999999999875
No 133
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.67 E-value=6e-08 Score=75.79 Aligned_cols=208 Identities=12% Similarity=0.033 Sum_probs=120.7
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC--CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22222111111112-2222222222222223--44320488732777436799999984267543321012346554210
Q gi|254780916|r 130 PSQENEHCALDSLI-AVSPAMIQVVDLARKA--GDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDK 206 (482)
Q Consensus 130 ~~~~~~~~~~~~Li-G~S~~m~~v~~~i~~~--a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~ 206 (482)
.-......+|+.++ |.+.... ..+... .....+++|.|++|+||+++.+++.+.....+..-+.+.|.... .
T Consensus 12 ~~~l~~~~tfdnFi~g~n~~~~---~al~~~~~~~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~~~--~ 86 (235)
T PRK08084 12 PLYLPDDETFASFYPGDNDSLL---AALQNVLRQEHSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDKRA--W 86 (235)
T ss_pred CCCCCCCCCHHCCCCCCCHHHH---HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHH--H
T ss_conf 8999997663023448869999---9999998578987699989999888999999999997079857998779866--5
Q ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHH--HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 0243311255553221110012344667147516642001--88999888877642001123553212343156521433
Q gi|254780916|r 207 IEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALP--LAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKN 284 (482)
Q Consensus 207 ~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~--~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~ 284 (482)
+..+++ .-++ +-..+++|+|+.+. ...|..|+.++..-. . .-+++||.+++..
T Consensus 87 ~~~~~l--------------~~l~--~~dll~iDDi~~i~g~~~~ee~lF~l~N~~~-~--------~g~~~ll~ts~~~ 141 (235)
T PRK08084 87 FVPEVL--------------EGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRIL-E--------SGKTRLLITGDRP 141 (235)
T ss_pred HHHHHH--------------HHHH--HCCEEEEECHHHHCCCHHHHHHHHHHHHHHH-H--------HCCCEEEEECCCC
T ss_conf 179999--------------8764--1898998274554699789999999999999-8--------4896699967988
Q ss_pred CCCCCCHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 2111111233379998865-433446778--7744222255667776410112233332111110001223389868999
Q gi|254780916|r 285 LLPQVKSHVFRKDLYYRIS-VFLINISTL--RSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQEL 361 (482)
Q Consensus 285 L~~~~~~g~fr~dLy~rL~-~~~i~iPpL--ReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL 361 (482)
+.++- .+-+||--||+ +..++++|+ -+|.+ | +.+.+...|. .++++..++|.. .++.|+|+|
T Consensus 142 P~~l~---~~l~DL~SRl~~g~~~~i~~~dde~~~~-i-------L~~~a~~rgl---~l~~~V~~yl~~-~~~R~~~~L 206 (235)
T PRK08084 142 PRQLN---LGLPDLASRLDWGQIYKLQPLSDEEKLQ-A-------LQLRARLRGF---ELPEDVGRFLLK-RLDREMRTL 206 (235)
T ss_pred HHHCC---CCCHHHHHHHHCCCEEEECCCCHHHHHH-H-------HHHHHHHCCC---CCCHHHHHHHHH-HCCCCHHHH
T ss_conf 24302---3128899999569727855999899999-9-------9999997399---999899999998-615889999
Q ss_pred HHHHHHHHH--HCCCCCCCHHHH
Q ss_conf 999999987--438981068895
Q gi|254780916|r 362 KNILLRAVI--GLKDSHLTEDRF 382 (482)
Q Consensus 362 ~n~i~r~~i--~~~~~~i~~~~~ 382 (482)
.+++.++-. +..+..||..-+
T Consensus 207 ~~~l~~Ld~~Sl~~kr~iTip~v 229 (235)
T PRK08084 207 FMTLDQLDKASITAQRKLTIPFV 229 (235)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 99999999999981999999999
No 134
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=98.66 E-value=4.2e-08 Score=76.89 Aligned_cols=202 Identities=17% Similarity=0.220 Sum_probs=116.5
Q ss_pred CCCCCCCC-CCCCCCCCCCCCCCCCCC----CCCEEEEEECCCCCHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCC
Q ss_conf 11111111-222222222222222234----4320488732777436799999984267--5433210123465542100
Q gi|254780916|r 135 EHCALDSL-IAVSPAMIQVVDLARKAG----DCAIPIMIQGEFGVGKKRLSRFIHESGK--RAFFPFFIVNCGMIDQDKI 207 (482)
Q Consensus 135 ~~~~~~~L-iG~S~~m~~v~~~i~~~a----~~~~~vli~Ge~GtGK~~~A~~iH~~s~--r~~~~fi~v~c~~~~~~~~ 207 (482)
...+|+.+ +|.+- +..+..+.+++ ..--|++|.|++|+||+++.+++-+... ..+...+.+++..+....+
T Consensus 3 ~~~TFdnF~vg~~N--~~a~~~~~~i~~~~~~~~npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~~~~~~~ 80 (219)
T pfam00308 3 KRYTFENFVIGSSN--RFAHAAALAVAEAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEEFLNDFV 80 (219)
T ss_pred CCCCCCCCCCCCCH--HHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHH
T ss_conf 99871020236838--9999999999967587678269988999988899999999999849998288843999999889
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHH--HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 2433112555532211100123446671475166420018--89998888776420011235532123431565214332
Q gi|254780916|r 208 EKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPL--AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNL 285 (482)
Q Consensus 208 e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~--~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L 285 (482)
+ .+. . +........++.+ ..|++|+|+.+.. ..|..|+.++..-. ....++|.+++.++
T Consensus 81 ~-~l~---~---~~~~~f~~~l~~~--d~l~iDDi~~l~~~~~~ee~lf~l~N~~~----------~~~~~lllts~~~p 141 (219)
T pfam00308 81 D-ALR---D---NKIEAFKKSYRNV--DLLLIDDIQFLAGKEKTQEEFFHTFNALH----------ENNKQIVLTSDRPP 141 (219)
T ss_pred H-HHH---C---CCHHHHHHHHHHC--CHHHHCCHHHHCCCHHHHHHHHHHHHHHH----------HCCCEEEEECCCCC
T ss_conf 9-998---1---8888999997632--33652236765686478999999999999----------72986999779981
Q ss_pred CCCCCHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 1111112333799988654-3--344677877442222556677764101122333321111100012233898689999
Q gi|254780916|r 286 LPQVKSHVFRKDLYYRISV-F--LINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELK 362 (482)
Q Consensus 286 ~~~~~~g~fr~dLy~rL~~-~--~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~ 362 (482)
.++- .+.+||--||+. . .|..|.--+|. .++.+.+.+.|. .+++++.+.|.++ +++++|+|.
T Consensus 142 ~~l~---~~~~dL~SRL~~g~~~~i~~pdd~~~~--------~iL~~~a~~r~l---~l~~~v~~yl~~r-~~R~~r~L~ 206 (219)
T pfam00308 142 KELE---GFEDRLRSRFEWGLIIAIEPPDLETRL--------AILRKKAEEENI---NIPNEVLNFIAQR-ITDNVRELE 206 (219)
T ss_pred CCCC---CCCHHHHHHHHCCEEEECCCCCHHHHH--------HHHHHHHHHCCC---CCCHHHHHHHHHH-CCCCHHHHH
T ss_conf 0024---532779999868756611699999999--------999999998499---9999999999984-279899999
Q ss_pred HHHHHHHHHC
Q ss_conf 9999998743
Q gi|254780916|r 363 NILLRAVIGL 372 (482)
Q Consensus 363 n~i~r~~i~~ 372 (482)
.++.++...+
T Consensus 207 ~~L~~L~~~~ 216 (219)
T pfam00308 207 GALNRLLAFA 216 (219)
T ss_pred HHHHHHHHHH
T ss_conf 9999999855
No 135
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR; InterPro: IPR011785 This entry represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor . These proteins contain a Helix-Turn-Helix motif of the "fis" type..
Probab=98.64 E-value=4.7e-08 Score=76.53 Aligned_cols=45 Identities=31% Similarity=0.509 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 899999999999999982872789997848998899999998188
Q gi|254780916|r 433 RRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREYNI 477 (482)
Q Consensus 433 ~~l~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~~gi 477 (482)
++.+=+|+.+|+.||+-+++|++.||++||+||.+||-||++|||
T Consensus 409 ettdvvE~~cieAALeLtr~NR~sAAE~LgLSRQSLY~KLrrYgL 453 (453)
T TIGR02040 409 ETTDVVEQLCIEAALELTRDNRASAAEILGLSRQSLYVKLRRYGL 453 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 058999999999999860041789999974346888888774079
No 136
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=7.5e-08 Score=75.11 Aligned_cols=217 Identities=18% Similarity=0.213 Sum_probs=134.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 2211111111222222222222222234-----------43204887327774367999999842675433210123465
Q gi|254780916|r 133 ENEHCALDSLIAVSPAMIQVVDLARKAG-----------DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGM 201 (482)
Q Consensus 133 ~~~~~~~~~LiG~S~~m~~v~~~i~~~a-----------~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~ 201 (482)
+....+++.+-|-...++++++.++-=- .-..-||+.|++||||+++||++-+. .+..||.|..+.
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~---T~AtFIrvvgSE 220 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ---TDATFIRVVGSE 220 (406)
T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHC---CCCEEEEECCHH
T ss_conf 58987865335889999999998403366888999749999971276689997588999998720---586699942199
Q ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC---CCEEEECCCCHH-----------HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 54210024331125555322111001234466---714751664200-----------1889998888776420011235
Q gi|254780916|r 202 IDQDKIEKFLFGDVDLQTKNSAQFLGKFIEAN---GGTIVLEEPDAL-----------PLAVQGRIYNFIETGKIEFFDS 267 (482)
Q Consensus 202 ~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~---~Gtl~l~ei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~ 267 (482)
+- ....|+ |+.- ...+|+.|. --.+|+|||+.. ..++|.-++.+|.+= ++
T Consensus 221 lV-----qKYiGE-----GaRl-VRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql-----DG 284 (406)
T COG1222 221 LV-----QKYIGE-----GARL-VRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL-----DG 284 (406)
T ss_pred HH-----HHHHCC-----CHHH-HHHHHHHHHHCCCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC-----CC
T ss_conf 99-----998341-----1699-99999987414984999831122311113688885099999999999860-----58
Q ss_pred CCCCCCCCEEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 53212343156521433--2-11111123337999886543344677877442222556677764101122333321111
Q gi|254780916|r 268 RGAIRLDVRLIFLTEKN--L-LPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDK 344 (482)
Q Consensus 268 ~~~~~~~~RiIa~t~~~--L-~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~ 344 (482)
-.+ .-|++||+|||+. | ..+..-|+|.. -+.+-+|..+.|.+ | ++-++++.+.. ..++=+
T Consensus 285 FD~-~~nvKVI~ATNR~D~LDPALLRPGR~DR-------kIEfplPd~~gR~~-I-------l~IHtrkM~l~-~dvd~e 347 (406)
T COG1222 285 FDP-RGNVKVIMATNRPDILDPALLRPGRFDR-------KIEFPLPDEEGRAE-I-------LKIHTRKMNLA-DDVDLE 347 (406)
T ss_pred CCC-CCCEEEEEECCCCCCCCHHHCCCCCCCC-------EEECCCCCHHHHHH-H-------HHHHHHHCCCC-CCCCHH
T ss_conf 897-8876899855885555766508875453-------01168989789999-9-------99876214676-676999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHH---CCCCCCCHHHHHHHHCC
Q ss_conf 100012233898689999999999874---38981068895454212
Q gi|254780916|r 345 ALSLLTKYPWIDNVQELKNILLRAVIG---LKDSHLTEDRFVLLLSR 388 (482)
Q Consensus 345 a~~~L~~y~WPGNvREL~n~i~r~~i~---~~~~~i~~~~~~~~l~~ 388 (482)
.+..+.. -=|-.||+++|.-|-+. ....+++.+||.....+
T Consensus 348 ~la~~~~---g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 348 LLARLTE---GFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEK 391 (406)
T ss_pred HHHHHCC---CCCHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHH
T ss_conf 9987538---9956779999998759999860473339999999999
No 137
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.63 E-value=4e-08 Score=77.07 Aligned_cols=133 Identities=15% Similarity=0.118 Sum_probs=93.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCC-------------------------C
Q ss_conf 111111222222222222222234432048873277743679999998426754-------------------------3
Q gi|254780916|r 137 CALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRA-------------------------F 191 (482)
Q Consensus 137 ~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~-------------------------~ 191 (482)
..+.++.|+.. .++.+.-+|.-..++|+.|++|+||+++|+.+...-+-- .
T Consensus 188 ~D~~dv~Gq~~----akraleIAAAGgHnlLl~GpPG~GKTMlA~rlp~ILPpLt~~e~lEv~~I~Svag~~~~~~~~~~ 263 (506)
T PRK09862 188 HDLSDVVGQEQ----GKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQ 263 (506)
T ss_pred CCHHHHCCCHH----HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 67565369799----99999997446886598769994598999775123899898999999999987189877775466
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHC--CCCCCCC
Q ss_conf 32101234655421002433112555532211100123446671475166420018899988887764200--1123553
Q gi|254780916|r 192 FPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKI--EFFDSRG 269 (482)
Q Consensus 192 ~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~--~~~g~~~ 269 (482)
.||-.-.-++ =..-|+| |...-++|-+-.|++|.|||||..+.+..+..-|-+-|++|++ .|.++.-
T Consensus 264 rPfR~PHHs~-----S~~aliG------GG~~~~PGEISLAH~GVLFLDElpEF~r~vLe~LRqPLE~g~I~IsRa~~~~ 332 (506)
T PRK09862 264 RPFRSPHHSA-----SLTAMVG------GGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKI 332 (506)
T ss_pred CCEECCCCCC-----CHHHHHC------CCCCCCCCCEEECCCCEEEECCHHCCCHHHHHHHHHHHCCCEEEEEECCCEE
T ss_conf 8503788765-----4766637------9999999722213575788455000688899987762247759999668679
Q ss_pred CCCCCCEEEEECCCC
Q ss_conf 212343156521433
Q gi|254780916|r 270 AIRLDVRLIFLTEKN 284 (482)
Q Consensus 270 ~~~~~~RiIa~t~~~ 284 (482)
..+.+|.+|+++|-=
T Consensus 333 ~~PA~F~LVaAmNPC 347 (506)
T PRK09862 333 TYPARFQLVAAMNPS 347 (506)
T ss_pred EECCHHHHEHHCCCC
T ss_conf 861533111103788
No 138
>PRK08727 hypothetical protein; Validated
Probab=98.62 E-value=1.8e-07 Score=72.50 Aligned_cols=208 Identities=16% Similarity=0.154 Sum_probs=124.2
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 22111111112-22222222222222234432048873277743679999998426754332101234655421002433
Q gi|254780916|r 133 ENEHCALDSLI-AVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFL 211 (482)
Q Consensus 133 ~~~~~~~~~Li-G~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~l 211 (482)
.....+++.++ |.+..+..+...+ ...+..++.|.|++|+||+++++++.+.....+..-..+.|........
T Consensus 12 ~~~~~tfdnFi~~~n~~~a~l~~~~--~~~~~~~lyl~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~l~~~~~~~~---- 85 (233)
T PRK08727 12 APSDQRFDSYIAAPDGLLAQLQALA--AGQSSDWLYLSGPAGTGKTHLALSLCAAAEQAGRSSAYLPLQAAAGRLR---- 85 (233)
T ss_pred CCCCCCHHHCCCCCHHHHHHHHHHH--CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHH----
T ss_conf 9972242120678559999999874--3888898999899999889999999999982799728844788532025----
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHH--HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 11255553221110012344667147516642001--8899988887764200112355321234315652143321111
Q gi|254780916|r 212 FGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALP--LAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQV 289 (482)
Q Consensus 212 FG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~--~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~ 289 (482)
+...-++ ....+++|+|+.+. ..-|..|+.++..- ...+.+++.+++..+.++-
T Consensus 86 ------------~~l~~le--~~~ll~iDDid~i~g~~~~e~aLFhL~N~~----------~~~~~~ll~ts~~~P~~l~ 141 (233)
T PRK08727 86 ------------DALEALE--GRSLVALDGVDSIAGQREDEVALFDFHNRA----------RAAGITLLYTARQMPDGLA 141 (233)
T ss_pred ------------HHHHHHC--CCCEEEEECCHHCCCCHHHHHHHHHHHHHH----------HHCCCEEEEECCCCHHHHC
T ss_conf ------------6775310--389789855011269827999999999999----------8619838997798956623
Q ss_pred CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 11233379998865-43344677877442222556677764101122333321111100012233898689999999999
Q gi|254780916|r 290 KSHVFRKDLYYRIS-VFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRA 368 (482)
Q Consensus 290 ~~g~fr~dLy~rL~-~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~ 368 (482)
...+||--||+ +..+.++|+-|-. -+. .+.+.+...| ..++++++++|.++ ++-|++.|.+++.++
T Consensus 142 ---~~l~DL~SRL~~~~~~~l~~~dD~~-~~~-----iL~~~a~~rg---l~l~~~V~~Yll~r-~~R~~~~l~~~l~~L 208 (233)
T PRK08727 142 ---LVLPDLRSRLSQCIRIGLPVLDDVA-RAA-----VLRDRAQRRG---LALDEAAIDWLLTH-GERELAGLVALLDRL 208 (233)
T ss_pred ---CCHHHHHHHHHCCCEEEECCCCHHH-HHH-----HHHHHHHHCC---CCCCHHHHHHHHHH-CCCCHHHHHHHHHHH
T ss_conf ---1002199999669228857889799-999-----9999999869---99998999999985-688999999999999
Q ss_pred H--HHCCCCCCCHHHHH
Q ss_conf 8--74389810688954
Q gi|254780916|r 369 V--IGLKDSHLTEDRFV 383 (482)
Q Consensus 369 ~--i~~~~~~i~~~~~~ 383 (482)
- .+.....||..-+.
T Consensus 209 D~~SL~~kr~iTip~vk 225 (233)
T PRK08727 209 DRESLAAKRRITVPFLR 225 (233)
T ss_pred HHHHHHCCCCCCHHHHH
T ss_conf 99999808988899999
No 139
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.3e-08 Score=78.78 Aligned_cols=265 Identities=19% Similarity=0.210 Sum_probs=151.8
Q ss_pred CCEEE-EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC-CCCC--CCCCCEE
Q ss_conf 32048-873277743679999998426754332101234655421002433112555532211100-1234--4667147
Q gi|254780916|r 162 CAIPI-MIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFL-GKFI--EANGGTI 237 (482)
Q Consensus 162 ~~~~v-li~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~-g~~~--~a~~Gtl 237 (482)
...|| ++.|++|+||+.+++.|-..-. .+|+.+..+++.+ |+|+-||+.-+-|+-..++ -.+. ...|-..
T Consensus 348 ~kGpILcLVGPPGVGKTSLgkSIA~al~---RkfvR~sLGGvrD---EAEIRGHRRTYIGaMPGrIiQ~mkka~~~NPv~ 421 (782)
T COG0466 348 LKGPILCLVGPPGVGKTSLGKSIAKALG---RKFVRISLGGVRD---EAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVF 421 (782)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHC---CCEEEEECCCCCC---HHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEE
T ss_conf 7885799978998870118999999958---9779995476542---777535531233568728999999867768747
Q ss_pred EECCCCHHHHHHH----HHHHHHHH---HHHCCCCCCCCCCC---CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5166420018899----98888776---42001123553212---34315652143321111112333799988654334
Q gi|254780916|r 238 VLEEPDALPLAVQ----GRIYNFIE---TGKIEFFDSRGAIR---LDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLI 307 (482)
Q Consensus 238 ~l~ei~~L~~~~Q----~~Ll~~l~---~~~~~~~g~~~~~~---~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i 307 (482)
.||||+.|+.+.| ..||.+|+ +..|.- -.-..+ ++|-+||+.|.= +. |
T Consensus 422 LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~D--hYLev~yDLS~VmFiaTANsl------------------~t--I 479 (782)
T COG0466 422 LLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSD--HYLEVPYDLSKVMFIATANSL------------------DT--I 479 (782)
T ss_pred EEECHHHCCCCCCCCHHHHHHHHCCHHHCCCHHH--CCCCCCCCHHHEEEEEECCCC------------------CC--C
T ss_conf 8640333167777886888886269765676122--201676644325888603751------------------32--9
Q ss_pred HHHHHHHHHHHHHH----------H-HHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCC-CCCCHHHHHHHH----HHHH
Q ss_conf 46778774422225----------5-667776410112233--3321111100012233-898689999999----9998
Q gi|254780916|r 308 NISTLRSRSEDIPW----------L-VHFFLQSFCTKNAIK--QISISDKALSLLTKYP-WIDNVQELKNIL----LRAV 369 (482)
Q Consensus 308 ~iPpLReR~eDI~~----------L-~~~fl~~~~~~~~~~--~~~ls~~a~~~L~~y~-WPGNvREL~n~i----~r~~ 369 (482)
=.||.+|.|=|.. + -+|.+-+.-+++|.+ -..|+++|+..+.+|. ----||.|+..+ +.++
T Consensus 480 -P~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~ 558 (782)
T COG0466 480 -PAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAA 558 (782)
T ss_pred -CHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -8678430305642688869999999984456899975998233556589999999987676210389999999999999
Q ss_pred HH----CCCC--CCCHHHHHHHHCCCCCCCCCCC--------CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 74----3898--1068895454212445432234--------32222223344432100000000112344454325899
Q gi|254780916|r 370 IG----LKDS--HLTEDRFVLLLSREGKKEREFH--------TETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRL 435 (482)
Q Consensus 370 i~----~~~~--~i~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 435 (482)
.. .... .++...+...++...-...... ...+++...- .... ......|..+.-...-.|
T Consensus 559 ~~i~~~~~k~~~~i~~~~l~~yLG~~~f~~~~~~~~~~vGvVtGLAWT~vGG----d~L~--IE~~~~~Gkg~l~lTG~L 632 (782)
T COG0466 559 KKILLKKEKSIVKIDEKNLKKYLGVPVFRYGKAEEEDQVGVVTGLAWTEVGG----DLLT--IEAVKMPGKGKLTLTGSL 632 (782)
T ss_pred HHHHHCCCCCCEEECHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCC----EEEE--EEEEEECCCCCEEEECCH
T ss_conf 9997257566244278899997398634753112478870585444424786----4899--988871687507996057
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCH
Q ss_conf 999999999999982872789997848998
Q gi|254780916|r 436 SDIEKEIIGLAMKLYRAQMSEVARRLGIGR 465 (482)
Q Consensus 436 ~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR 465 (482)
-++=|+=+..||...+- -|..+||..
T Consensus 633 GdVMKESa~~A~s~vrs----~a~~~~i~~ 658 (782)
T COG0466 633 GDVMKESAQAALSYVRS----RAEKLGIDP 658 (782)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHCCCCC
T ss_conf 99999999999999999----898719983
No 140
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.61 E-value=1.3e-07 Score=73.41 Aligned_cols=219 Identities=16% Similarity=0.255 Sum_probs=125.5
Q ss_pred CCCCCCCCCCCCCCCCCCC---CCCCCCCC-------CCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 2221111111122222222---22222222-------3443204887327774367999999842675433210123465
Q gi|254780916|r 132 QENEHCALDSLIAVSPAMI---QVVDLARK-------AGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGM 201 (482)
Q Consensus 132 ~~~~~~~~~~LiG~S~~m~---~v~~~i~~-------~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~ 201 (482)
.......|.+..|...+-+ ++.+.+.. =|....-||+.|++||||+++||++-.. ++-||+.+..+.
T Consensus 144 ~~~~~vtF~DVaG~~eaK~el~EiVdfLk~P~k~~~~Gak~PkGvLL~GPPGtGKTlLAkAvAgE---a~vpF~~~sgse 220 (644)
T PRK10733 144 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE---AKVPFFTISGSD 220 (644)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCC---CCCEEEEEEHHH
T ss_conf 77898771040897899999999999812979999749979985177798998778999998645---598089978477
Q ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC---CEEEECCCCHHHH----------HHHHH-HHHHHHHHHCCCCCC
Q ss_conf 542100243311255553221110012344667---1475166420018----------89998-888776420011235
Q gi|254780916|r 202 IDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANG---GTIVLEEPDALPL----------AVQGR-IYNFIETGKIEFFDS 267 (482)
Q Consensus 202 ~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~---Gtl~l~ei~~L~~----------~~Q~~-Ll~~l~~~~~~~~g~ 267 (482)
+.+ ...|. ..++..-+|++|.. -.+|+|||+.+.. +.... |-++|-+ +++
T Consensus 221 f~e-----~~vGv------ga~rVR~lF~~Ar~~aP~IIFIDEiDaig~~R~~~~~gg~~e~~~tlNqlL~E-----mDG 284 (644)
T PRK10733 221 FVE-----MFVGV------GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVE-----MDG 284 (644)
T ss_pred HHH-----EEEEC------CHHHHHHHHHHHHHCCCEEEEEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHH-----HHC
T ss_conf 302-----22530------68999999999996699799995322036667898889832888789999999-----548
Q ss_pred CCCCCCCCEEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 53212343156521433--2-11111123337999886543344677877442222556677764101122333321111
Q gi|254780916|r 268 RGAIRLDVRLIFLTEKN--L-LPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDK 344 (482)
Q Consensus 268 ~~~~~~~~RiIa~t~~~--L-~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~ 344 (482)
-.. ...+=+|++||+. | ..+..-|+|.. .+.|.+|-..+|.+ ++..++++. ... ..++-+
T Consensus 285 f~~-~~~ViviaATNrpd~LD~ALlRPGRFDr-------~I~V~lPd~~~R~~----ILkvh~~~~----~l~-~dvdl~ 347 (644)
T PRK10733 285 FEG-NEGIIVIAATNRPDVLDPALLRPGRFDR-------QVVVGLPDVRGREQ----ILKVHMRRV----PLA-PDIDAA 347 (644)
T ss_pred CCC-CCCEEEEEECCCCCCCCHHHHCCCCCCE-------EEEECCCCHHHHHH----HHHHHHCCC----CCC-CCCCHH
T ss_conf 888-7876999626997554777716888655-------99977989889999----999996488----777-311589
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHH---CCCCCCCHHHHHHHHCCC
Q ss_conf 100012233898689999999999874---389810688954542124
Q gi|254780916|r 345 ALSLLTKYPWIDNVQELKNILLRAVIG---LKDSHLTEDRFVLLLSRE 389 (482)
Q Consensus 345 a~~~L~~y~WPGNvREL~n~i~r~~i~---~~~~~i~~~~~~~~l~~~ 389 (482)
.++.... -|.| -+|+|++..|.+. .....|+..|+.....+.
T Consensus 348 ~lA~~T~-GfSG--ADLaNlvNEAAl~AaR~~k~~It~~d~e~A~drV 392 (644)
T PRK10733 348 IIARGTP-GFSG--ADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 392 (644)
T ss_pred HHHCCCC-CCCH--HHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 8844599-8670--3332599999999987087543076689988885
No 141
>KOG0480 consensus
Probab=98.61 E-value=2.6e-07 Score=71.26 Aligned_cols=210 Identities=14% Similarity=0.220 Sum_probs=128.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCC---CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 4320488732777436799999984267543321012---3465542100243311255553221110012344667147
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIV---NCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTI 237 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v---~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl 237 (482)
..+.+|+|.|.+||||.-+=++.-+.|+|+ -++.= ..|+++..++ ++..+|...--.|.+-.|++|..
T Consensus 376 RGDinv~iVGDPgt~KSQfLk~v~~fsPR~--vYtsGkaSSaAGLTaaVv-------kD~esgdf~iEAGALmLADnGIC 446 (764)
T KOG0480 376 RGDINVCIVGDPGTGKSQFLKAVCAFSPRS--VYTSGKASSAAGLTAAVV-------KDEESGDFTIEAGALMLADNGIC 446 (764)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC--EEECCCCCCCCCCEEEEE-------ECCCCCCEEEECCCEEECCCCEE
T ss_conf 677318995799713889999986548731--585076344346468997-------63777733553473788169668
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCEEEEECCC-----CCCCCCCHH------HH-HHHHH----
Q ss_conf 5166420018899988887764200112--355321234315652143-----321111112------33-37999----
Q gi|254780916|r 238 VLEEPDALPLAVQGRIYNFIETGKIEFF--DSRGAIRLDVRLIFLTEK-----NLLPQVKSH------VF-RKDLY---- 299 (482)
Q Consensus 238 ~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~RiIa~t~~-----~L~~~~~~g------~f-r~dLy---- 299 (482)
++||-+.|...-|..|+.+++.+.+.-- |-.-......-||||+|. |=..-+.++ .+ |=|||
T Consensus 447 CIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLl 526 (764)
T KOG0480 447 CIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILL 526 (764)
T ss_pred EECHHCCCCHHHHHHHHHHHHHHEEHHEECCEEEEECCHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHHHHHCEEEEEE
T ss_conf 83100035707689999998751000330206886222355555327767745533006652277804542222799993
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-----------
Q ss_conf --------8865433446778774422225--------5667776410112233332111110001223-----------
Q gi|254780916|r 300 --------YRISVFLINISTLRSRSEDIPW--------LVHFFLQSFCTKNAIKQISISDKALSLLTKY----------- 352 (482)
Q Consensus 300 --------~rL~~~~i~iPpLReR~eDI~~--------L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y----------- 352 (482)
|.++...+.+ +-..+|-.. .++.|+. |++ .-.+.++.+|-+.|..+
T Consensus 527 D~~nE~~D~~ia~hIld~---h~~i~~~~~~~~~~~~e~vrkYi~-yAR---~~~P~ls~ea~~~lve~Y~~lR~~~~~~ 599 (764)
T KOG0480 527 DDCNEVVDYAIARHILDL---HRGIDDATERVCVYTLEQVRKYIR-YAR---NFKPKLSKEASEMLVEKYKGLRQRDAQG 599 (764)
T ss_pred CCCCHHHHHHHHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHHH-HHH---HCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 578667779999999987---436211023256664999999999-987---5375324899999999999987741025
Q ss_pred ----CCCCCHHHHHHHHHHHHHH---CCCCCCCHHHHHHHH
Q ss_conf ----3898689999999999874---389810688954542
Q gi|254780916|r 353 ----PWIDNVQELKNILLRAVIG---LKDSHLTEDRFVLLL 386 (482)
Q Consensus 353 ----~WPGNvREL~n~i~r~~i~---~~~~~i~~~~~~~~l 386 (482)
.||=-||||+++|+-.-.. .-...++.+++....
T Consensus 600 ~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~ 640 (764)
T KOG0480 600 NNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAV 640 (764)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 67666650699989899999999863324232699999999
No 142
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.61 E-value=8.3e-07 Score=67.76 Aligned_cols=258 Identities=20% Similarity=0.246 Sum_probs=140.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC---CCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 11111112222222222222222---344320488732777436799999984267543321012346554210024331
Q gi|254780916|r 136 HCALDSLIAVSPAMIQVVDLARK---AGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLF 212 (482)
Q Consensus 136 ~~~~~~LiG~S~~m~~v~~~i~~---~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lF 212 (482)
...+..++|+...-..+.=.|+. -...--.||+.|++|.||+++|+-|-+. .-+||...+...+|.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~E--------mgvn~k~tsGp~leK--- 90 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANE--------LGVNLKITSGPALEK--- 90 (332)
T ss_pred CCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH--------HCCCEEECCCCCCCC---
T ss_conf 654888518399999999999999844987674786479987688899999998--------567737636620157---
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCC-C---CCCCCCC---CCEEEEECCCC
Q ss_conf 125555322111001234-46671475166420018899988887764200112-3---5532123---43156521433
Q gi|254780916|r 213 GDVDLQTKNSAQFLGKFI-EANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFF-D---SRGAIRL---DVRLIFLTEKN 284 (482)
Q Consensus 213 G~~~~~~~~~~~~~g~~~-~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~-g---~~~~~~~---~~RiIa~t~~~ 284 (482)
..+-.+++- .-.|-.||+||||.|++.+-.-|.-++++-+..-+ | +.+.++. .|-+|.||++-
T Consensus 91 ---------~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~ 161 (332)
T COG2255 91 ---------PGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRA 161 (332)
T ss_pred ---------HHHHHHHHHCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHEEEEEEECCCCCCCEEECCCCCEEEEEECCCC
T ss_conf ---------26599998639867767772553147428989646753105778972487553476379981375101346
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--C
Q ss_conf 211111123337999886543344677877442222556-------6777641011223333211111000122338--9
Q gi|254780916|r 285 LLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLV-------HFFLQSFCTKNAIKQISISDKALSLLTKYPW--I 355 (482)
Q Consensus 285 L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~-------~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~W--P 355 (482)
|.. --|||+|-.=+..|- ...+.+.+..++. .+++++...+..+.- |
T Consensus 162 -------G~l--------------t~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i---~i~~~~a~eIA~rSRGTP 217 (332)
T COG2255 162 -------GML--------------TNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI---EIDEEAALEIARRSRGTP 217 (332)
T ss_pred -------CCC--------------CCHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHCCCCC
T ss_conf -------645--------------63368862860454058889999999988887387---768579999998636993
Q ss_pred C-CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 8-689999999999874389810688954542124454322343222222334443210000000011234445432589
Q gi|254780916|r 356 D-NVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRR 434 (482)
Q Consensus 356 G-NvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (482)
- -.|=|+.|-..+-+ ..+..|+.+-....+.... -+..-
T Consensus 218 RIAnRLLrRVRDfa~V-~~~~~I~~~ia~~aL~~L~---------------------------------------Vd~~G 257 (332)
T COG2255 218 RIANRLLRRVRDFAQV-KGDGDIDRDIADKALKMLD---------------------------------------VDELG 257 (332)
T ss_pred HHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHC---------------------------------------CCCCC
T ss_conf 8999999999999998-1688204899999998729---------------------------------------64025
Q ss_pred HHHHHHHHHHHHHHHHCCC---HHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 9999999999999982872---789997848998899999998188
Q gi|254780916|r 435 LSDIEKEIIGLAMKLYRAQ---MSEVARRLGIGRSTLYRKIREYNI 477 (482)
Q Consensus 435 l~e~E~~~I~~aL~~~~Gn---~~~aA~~LGIsR~tL~rKlk~~gi 477 (482)
|+++.+.++....+.++|. ..--|..+|..|.|+-.++.-|=|
T Consensus 258 Ld~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLi 303 (332)
T COG2255 258 LDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLI 303 (332)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 5689999999999973799823999999965767778888748998
No 143
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.59 E-value=1e-07 Score=74.16 Aligned_cols=141 Identities=13% Similarity=0.100 Sum_probs=102.2
Q ss_pred CEEEEECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 88999893--7999986089989999785469888999999998578983999926899999998885057432222222
Q gi|254780916|r 35 YDVFIVNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVS 112 (482)
Q Consensus 35 ~~v~~a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT~~~~~~~~~~a~~~g~~d~l~KP~~ 112 (482)
|+|.++.. .+++.+...++|.+++|++||+++|+++|+.+++.- .. ++++|+.++...-..+...|+.+|+.||++
T Consensus 13 ~~v~~a~~g~~~l~~~~~~~~~~~lld~~m~~~~~~~~~~~lk~~~-~~-~v~~t~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (435)
T COG3706 13 KEVATAKKGLIALAILLDHKPDYKLLDVMMPGMDGFELCRRLKAEP-AT-VVMVTALDDSAPRVRGLKAGADDFLTKPVN 90 (435)
T ss_pred HHHHHCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHCCC-CC-EEEEEECCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 5463425427799997448987487410068867301998763587-51-699860378777556776313441367777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 22222222222222222222221111111122222222222222223443204887327774367999999842
Q gi|254780916|r 113 RKQLCDSIICALREGVVPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES 186 (482)
Q Consensus 113 ~~~L~~~i~~al~~~~~~~~~~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~ 186 (482)
...+..+.....+......+...........+.|+.+..- ...-||+..+..+--..+.+.+-..
T Consensus 91 ~~~~~~r~~~l~~~k~~~de~~~~~~~~~~~~~~~~~~~~---------~~~kILvvdD~~~~~~~l~~~L~~~ 155 (435)
T COG3706 91 DSQLFLRAKSLVRLKCSIDELRLREETGGELGVSPLLPED---------APKKILVVDDDATQRERLRRILQVE 155 (435)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCC---------CCCEEEEECCCHHHHHHHHHHHHHC
T ss_conf 1778875266314444578985145654212356455556---------6750899748077999999998753
No 144
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=3e-07 Score=70.88 Aligned_cols=217 Identities=14% Similarity=0.158 Sum_probs=123.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC----CCCCCCCC-CCCCCCCCCCCHH
Q ss_conf 111111112222222222222222344320488732777436799999984267----54332101-2346554210024
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGK----RAFFPFFI-VNCGMIDQDKIEK 209 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~----r~~~~fi~-v~c~~~~~~~~e~ 209 (482)
....|..++|+....+.+...+.. .......|+.|+.||||+.+||.+-..-. ....|--. -+|.++.......
T Consensus 11 RP~~f~dvvgQ~~v~~~L~n~i~~-~~i~hayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C~~i~~g~~~D 89 (541)
T PRK05563 11 RPRTFEDVVGQEHITTTLKNQIIN-NRIAHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEICKKINEGLLMD 89 (541)
T ss_pred CCCCHHHHCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCC
T ss_conf 899776624849999999999984-9932045303879958999999999995799988898575148899985689887
Q ss_pred HHHCCCCCCC--CCCCCCCCCCC-------CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
Q ss_conf 3311255553--22111001234-------46671475166420018899988887764200112355321234315652
Q gi|254780916|r 210 FLFGDVDLQT--KNSAQFLGKFI-------EANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFL 280 (482)
Q Consensus 210 ~lFG~~~~~~--~~~~~~~g~~~-------~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~ 280 (482)
-+ +-+++. |-..-| .+.+ .+.--...+||+|-|+...+..||+.|++. +.++++|.+
T Consensus 90 v~--Eidaas~~gvd~iR-~~~~~~~~~p~~~~~Kv~IiDEvhmls~~a~nallKtlEeP-----------p~~~~Fila 155 (541)
T PRK05563 90 VI--EIDAASNNGVDDIR-EIIENVKYPPQEGKYKVYIMDEVHMLSQGAVNAFLKTLEEP-----------PSNVIFILA 155 (541)
T ss_pred EE--EECCCCCCCHHHHH-HHHHHCEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC-----------CCCCEEEEE
T ss_conf 36--62444447889999-99976104876787059999772338999999999998548-----------777569997
Q ss_pred CCCCCC---C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 143321---1-111123337999886543344677877442222556677764101122333321111100012233898
Q gi|254780916|r 281 TEKNLL---P-QVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWID 356 (482)
Q Consensus 281 t~~~L~---~-~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPG 356 (482)
|+..-. . +....+|+ --.|.. ..++.+ |...+.+.|. .++++|+.++.... -|
T Consensus 156 tte~~ki~~tI~SRcq~f~--------f~~i~~----------~~i~~~-L~~I~~~E~i---~~~~~al~lIa~~s-~G 212 (541)
T PRK05563 156 TTDPQKLPITILSRCQRFD--------FKRIKV----------KDIFKR-LRKIVEEQGI---FADDKSLNLIARMS-DG 212 (541)
T ss_pred CCCCCCCCHHHHHHEEEEE--------EEECCH----------HHHHHH-HHHHHHHCCC---CCCHHHHHHHHHHC-CC
T ss_conf 6984427455674213577--------543899----------999999-9999998499---98789999999745-99
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
Q ss_conf 6899999999998743898106889545421244
Q gi|254780916|r 357 NVQELKNILLRAVIGLKDSHLTEDRFVLLLSREG 390 (482)
Q Consensus 357 NvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~~ 390 (482)
-+|.=-+++.+++..+ ++.|+.+++...++...
T Consensus 213 smRDAlslLdQ~is~~-~~~it~~~v~~~lG~~~ 245 (541)
T PRK05563 213 AMRDALSILDQAISMG-DGKVDYDDVVSMLGLVT 245 (541)
T ss_pred CHHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCCC
T ss_conf 7788999999999835-99866999999968999
No 145
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=1.6e-06 Score=65.80 Aligned_cols=213 Identities=15% Similarity=0.126 Sum_probs=124.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCC----CCCCCCCCC-----CCCCCCCC-
Q ss_conf 11111111222222222222222234432048873277743679999998426----754332101-----23465542-
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESG----KRAFFPFFI-----VNCGMIDQ- 204 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s----~r~~~~fi~-----v~c~~~~~- 204 (482)
....|+.++|+....+.+...+.. ......-|++|+.||||+.+||.+-..- .-.++|-.. -+|.++..
T Consensus 16 RP~~f~~liGQ~~~~~~l~n~i~~-~~~~~aylf~G~rG~GKTt~Ari~ak~lnc~~~~~~~~~~~~c~~c~~c~~i~~~ 94 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILN-DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEKCTNCISFNNH 94 (507)
T ss_pred CCCCHHHHCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 799765623939999999999973-9966347745879978899999999996799988889988888887678998658
Q ss_pred ---CCCHHHHHCCCCCC--CCCCCCCCCCCCC-------CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf ---10024331125555--3221110012344-------66714751664200188999888877642001123553212
Q gi|254780916|r 205 ---DKIEKFLFGDVDLQ--TKNSAQFLGKFIE-------ANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIR 272 (482)
Q Consensus 205 ---~~~e~~lFG~~~~~--~~~~~~~~g~~~~-------a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 272 (482)
+.+| .+++ ||-..-| -+++. +.--..++||+|-|+.+.+..||+.|++. +
T Consensus 95 ~~~dv~E------iDaas~~gv~~ir-~l~~~~~~~p~~~~~kv~iidE~hmls~~a~nallktlEep-----------p 156 (507)
T PRK06645 95 NHPDIIE------IDAASKTSVDDIR-RIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP-----------P 156 (507)
T ss_pred CCCCEEE------EECCCCCCHHHHH-HHHHHCCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCC-----------C
T ss_conf 9998599------6378888889999-99863551787674358995214224899999999974278-----------6
Q ss_pred CCCEEEEECCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 34315652143321----11111233379998865433446778774422225566777641011223333211111000
Q gi|254780916|r 273 LDVRLIFLTEKNLL----PQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSL 348 (482)
Q Consensus 273 ~~~RiIa~t~~~L~----~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~ 348 (482)
.++++|.+|+..=. -+....+|+ + |+=+...++.| |...+.+.+ ..++++|+.+
T Consensus 157 ~~~~Fi~atte~~kip~ti~srcq~f~-------------~-----~~i~~~~i~~~-l~~i~~~E~---~~~~~~al~~ 214 (507)
T PRK06645 157 PHIIFIFATTEVQKIPATIISRCQRYD-------------L-----RRLSFEEIFKL-LEYITKQEN---LKADIEALRI 214 (507)
T ss_pred CCEEEEEECCCHHHCCHHHHHHCEEEE-------------E-----ECCCHHHHHHH-HHHHHHHCC---CCCCHHHHHH
T ss_conf 443899974853648378885432787-------------5-----45997999999-999999768---7777899999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHCCC
Q ss_conf 122338986899999999998743--89810688954542124
Q gi|254780916|r 349 LTKYPWIDNVQELKNILLRAVIGL--KDSHLTEDRFVLLLSRE 389 (482)
Q Consensus 349 L~~y~WPGNvREL~n~i~r~~i~~--~~~~i~~~~~~~~l~~~ 389 (482)
+.... -|-+|.=-+++.++...+ .++.|+.+++..-++-.
T Consensus 215 ia~~a-~Gs~RDalslldqai~~~~~~~~~I~~~~V~~MLGl~ 256 (507)
T PRK06645 215 IAYKS-EGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLV 256 (507)
T ss_pred HHHHC-CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
T ss_conf 99855-9986789999999999754898702699999983899
No 146
>KOG1051 consensus
Probab=98.56 E-value=2.7e-07 Score=71.23 Aligned_cols=230 Identities=14% Similarity=0.145 Sum_probs=133.2
Q ss_pred CCCCCCCCCCCCCCCCCCCC------CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 11222222222222222234------432048873277743679999998426754332101234655421002433112
Q gi|254780916|r 141 SLIAVSPAMIQVVDLARKAG------DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGD 214 (482)
Q Consensus 141 ~LiG~S~~m~~v~~~i~~~a------~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~ 214 (482)
.++|+..++..|-+.|.+.- +.+...|+.|++|+||+-+|+++-.+-......||.|||+.+.+ -+.+-|-
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e---vskligs 639 (898)
T KOG1051 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE---VSKLIGS 639 (898)
T ss_pred HCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECHHHHHH---HHHCCCC
T ss_conf 4466377899999999843203578888858999788841389999999999728864268961455555---6530489
Q ss_pred CCCCCC--CCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE---EEEECCCCCCCCC
Q ss_conf 555532--21110012344667147516642001889998888776420011235532123431---5652143321111
Q gi|254780916|r 215 VDLQTK--NSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVR---LIFLTEKNLLPQV 289 (482)
Q Consensus 215 ~~~~~~--~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R---iIa~t~~~L~~~~ 289 (482)
..++-| +..+-...+..--.-.++||||+...+.+|..|++++++|++.. .+.+.++++ ||-++|..-....
T Consensus 640 p~gyvG~e~gg~LteavrrrP~sVvLfdeIEkAh~~v~n~llq~lD~GrltD---s~Gr~Vd~kN~I~IMTsn~~~~~i~ 716 (898)
T KOG1051 640 PPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTD---SHGREVDFKNAIFIMTSNVGSSAIA 716 (898)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHHCCCCCC---CCCCEEECCCEEEEEECCCCHHHHH
T ss_conf 9555463057788899716996599983022228889999999986274005---8886750464599994263166664
Q ss_pred -----------------------------CH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf -----------------------------11----233379998865433446778774422225566777641011223
Q gi|254780916|r 290 -----------------------------KS----HVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAI 336 (482)
Q Consensus 290 -----------------------------~~----g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~ 336 (482)
.. ..||+++.-|++.+.+..|-=|+--..|...-...+.+-.++.+
T Consensus 717 ~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~~e~~~r~~~~~- 795 (898)
T KOG1051 717 NDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQLTEIEKRLEERE- 795 (898)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 0454100012310001233201333334320135655686785555405541425556666555667788887766667-
Q ss_pred CCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 3332111110001--2233898689999999999874389810
Q gi|254780916|r 337 KQISISDKALSLL--TKYPWIDNVQELKNILLRAVIGLKDSHL 377 (482)
Q Consensus 337 ~~~~ls~~a~~~L--~~y~WPGNvREL~n~i~r~~i~~~~~~i 377 (482)
-...+++.+...+ ..|+.-+-.|-++..|++.+..+-...+
T Consensus 796 ~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~~~ 838 (898)
T KOG1051 796 LLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEAL 838 (898)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999889997665305768477766899999999887776531
No 147
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.55 E-value=8.3e-07 Score=67.74 Aligned_cols=231 Identities=15% Similarity=0.127 Sum_probs=128.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEECCCCCHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCC-----CCH
Q ss_conf 111112222222222222222344--32048873277743679999998426754--332101234655421-----002
Q gi|254780916|r 138 ALDSLIAVSPAMIQVVDLARKAGD--CAIPIMIQGEFGVGKKRLSRFIHESGKRA--FFPFFIVNCGMIDQD-----KIE 208 (482)
Q Consensus 138 ~~~~LiG~S~~m~~v~~~i~~~a~--~~~~vli~Ge~GtGK~~~A~~iH~~s~r~--~~~fi~v~c~~~~~~-----~~e 208 (482)
..+.|.+.-..++.+...+..+.. ...+++|.|.+||||+++++.+-..-... +-.|+.|||..+... .+-
T Consensus 28 vP~~l~~Re~Ei~~l~~~l~~~l~g~~~~n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~~~t~~~i~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPSNVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQIDRTRYAILSEIA 107 (394)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 89989885999999999999997599998479988999989999999999999746896599996966898999999999
Q ss_pred HHHHCCCCCCCCCCC----CC-CCCCCCCCCC-EEEECCCCHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC
Q ss_conf 433112555532211----10-0123446671-47516642001889-99888877642001123553212343156521
Q gi|254780916|r 209 KFLFGDVDLQTKNSA----QF-LGKFIEANGG-TIVLEEPDALPLAV-QGRIYNFIETGKIEFFDSRGAIRLDVRLIFLT 281 (482)
Q Consensus 209 ~~lFG~~~~~~~~~~----~~-~g~~~~a~~G-tl~l~ei~~L~~~~-Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t 281 (482)
..|+|+.-..+|-.. +. ...+..-++- .++||||+.|-... |.-|..++.-.. .. ..+.+-+|+.+
T Consensus 108 ~~L~~~~~p~~G~s~~~~~~~l~~~l~~~~~~~ivvLDEiD~L~~~~~~~vLY~L~r~~~------~~-~~~~~~vI~Is 180 (394)
T PRK00411 108 RSLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLVEKEGNDVLYSLLRAHE------EY-PGARIGVIGIS 180 (394)
T ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCC------CC-CCCCEEEEEEE
T ss_conf 995699898778789999999999861669758999965540203665089999985402------26-88738999997
Q ss_pred CC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--CCCH
Q ss_conf 43-32111111233379998865433446778774422225566777641011223333211111000122338--9868
Q gi|254780916|r 282 EK-NLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPW--IDNV 358 (482)
Q Consensus 282 ~~-~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~W--PGNv 358 (482)
|. ++.+ .|.+-+--+|+.-.|..||-..- .|-.++.+=++. +...-.++++++.....+.= .|+.
T Consensus 181 N~~~~~~-----~Ldprv~S~l~~~~i~F~PY~~~--qL~~IL~~R~~~-----af~~gv~~~~~i~~~A~~~a~~~GDa 248 (394)
T PRK00411 181 SDLTFLY-----ILDPRVKSVFGPEEIVFPPYTAD--EIFDILKDRVEE-----GFYPGVVSDEVLELIADLTGREHGDA 248 (394)
T ss_pred CCCCHHH-----HHHHHHHCCCCCEEEEECCCCHH--HHHHHHHHHHHH-----CCCCCCCCHHHHHHHHHHHHHCCCCH
T ss_conf 6871776-----64077750278628985899989--999999999984-----14556789789999999985504758
Q ss_pred HHHHHHHHHHHHHCC---CCCCCHHHHHHHHC
Q ss_conf 999999999987438---98106889545421
Q gi|254780916|r 359 QELKNILLRAVIGLK---DSHLTEDRFVLLLS 387 (482)
Q Consensus 359 REL~n~i~r~~i~~~---~~~i~~~~~~~~l~ 387 (482)
|.=-.++++|.-.+. .+.++.+|+.....
T Consensus 249 R~Aldllr~A~e~Ae~~g~~~Vt~~hV~~A~~ 280 (394)
T PRK00411 249 RVAIDLLRRAGEIAEREGSRKVTEEDVRKAYE 280 (394)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 99999999999999971899658999999999
No 148
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.54 E-value=1.2e-07 Score=73.59 Aligned_cols=91 Identities=20% Similarity=0.280 Sum_probs=66.0
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-----CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 32048873277743679999998426754332101234655421-----0024331125555322111001234466714
Q gi|254780916|r 162 CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQD-----KIEKFLFGDVDLQTKNSAQFLGKFIEANGGT 236 (482)
Q Consensus 162 ~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~-----~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gt 236 (482)
..++||+.|++||||+++|+.+-.. -+-||+.+||..+++. -+|+-+.--.. ...+-++.|..|.
T Consensus 108 ~KsNILliGPTG~GKTlla~tLAk~---l~vPF~iaDAT~lTEaGYVGeDVE~ii~~Llq-------~Ad~dve~Ae~GI 177 (411)
T PRK05342 108 QKSNILLIGPTGSGKTLLAQTLARI---LNVPFAIADATTLTEAGYVGEDVENILLKLLQ-------AADYDVEKAQRGI 177 (411)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHH---HCCCEEEEEECEECCCCCCCCCHHHHHHHHHH-------HCCCCHHHHHCCE
T ss_conf 3453899899997788999999998---69998998612001267456079999999999-------8288899883682
Q ss_pred EEECCCCHHHH--------------HHHHHHHHHHHHHHC
Q ss_conf 75166420018--------------899988887764200
Q gi|254780916|r 237 IVLEEPDALPL--------------AVQGRIYNFIETGKI 262 (482)
Q Consensus 237 l~l~ei~~L~~--------------~~Q~~Ll~~l~~~~~ 262 (482)
+|+|||+.+.. -+|.-||..++...+
T Consensus 178 V~IDEIDKIarks~~~s~trDVSgEGVQqaLLkiiEGt~v 217 (411)
T PRK05342 178 VYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVA 217 (411)
T ss_pred EEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 8885023454247888887776512489999998758714
No 149
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=5.6e-07 Score=68.92 Aligned_cols=215 Identities=16% Similarity=0.185 Sum_probs=124.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC---C-CCCCCC-CCCCCCCCCCCCHH
Q ss_conf 111111112222222222222222344320488732777436799999984267---5-433210-12346554210024
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGK---R-AFFPFF-IVNCGMIDQDKIEK 209 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~---r-~~~~fi-~v~c~~~~~~~~e~ 209 (482)
....|+.++|+....+.+...+.+ .....-.|+.|+.||||+.+|+.+-..-. . ...|-- --+|..+.......
T Consensus 10 RP~~F~dvvGQe~i~~~L~nal~~-~ri~HAyLF~GP~GtGKts~ArifAkaLnC~~~~~~~pC~~C~~C~~i~~g~~~D 88 (557)
T PRK07270 10 RSQTFDEMVGQEVVATTLKQAVES-GKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNNCDICRDITNGSLED 88 (557)
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCC
T ss_conf 899876714819999999999985-9954044210899868999999999995799989999888777999987589997
Q ss_pred HHHCCCCCCCCC-CCCCCCC-----C--CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC
Q ss_conf 331125555322-1110012-----3--4466714751664200188999888877642001123553212343156521
Q gi|254780916|r 210 FLFGDVDLQTKN-SAQFLGK-----F--IEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLT 281 (482)
Q Consensus 210 ~lFG~~~~~~~~-~~~~~g~-----~--~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t 281 (482)
++ +.++.... ..+-..+ + .++..-..++||++.|+...|..||+.|++. +.++.+|.+|
T Consensus 89 -vi-Eidaas~~gVd~IRei~~~~~~~P~~~~yKV~IIDEah~Ls~~A~NALLKtLEEP-----------P~~~vFIL~T 155 (557)
T PRK07270 89 -VI-EIDAASNNGVDEIRDIRDKSTYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEP-----------TENVVFILAT 155 (557)
T ss_pred -EE-EECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCC-----------CCCEEEEEEE
T ss_conf -48-7347776788999999998423877788389997144534999999899985289-----------9876999984
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 433211111123337999886543344677877442-------2225566777641011223333211111000122338
Q gi|254780916|r 282 EKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSE-------DIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPW 354 (482)
Q Consensus 282 ~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~e-------DI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~W 354 (482)
+.. ..+ +|+.+.|.. +...++.+ |...+.+.|. .++++|+.++....
T Consensus 156 tep-~kI--------------------l~TI~SRCQrf~F~~i~~~~i~~~-L~~I~~~E~i---~~~~~aL~~Ia~~a- 209 (557)
T PRK07270 156 TEL-HKI--------------------PATILSRVQRFEFKSIKTKAIREH-LAWILDKEGI---SFEVEALNLIARRA- 209 (557)
T ss_pred CCH-HHC--------------------CHHHHHHHHHCCCCCCCHHHHHHH-HHHHHHHCCC---CCCHHHHHHHHHHC-
T ss_conf 994-759--------------------288874300010888999999999-9999998399---86999999999977-
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf 98689999999999874389810688954542124
Q gi|254780916|r 355 IDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSRE 389 (482)
Q Consensus 355 PGNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~ 389 (482)
-|-.|.=-+++.+++..+.+..|+.+++...++..
T Consensus 210 ~G~mRdAlsiLdQ~~s~~~~~~it~~~v~~~~G~~ 244 (557)
T PRK07270 210 EGGMRDALSILDQALSLSQDNQVTIAIAEEITGSI 244 (557)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
T ss_conf 99687899999999971799976799999996899
No 150
>PRK09581 pleD response regulator PleD; Reviewed
Probab=98.52 E-value=5e-07 Score=69.32 Aligned_cols=117 Identities=17% Similarity=0.242 Sum_probs=95.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHC--CCCCEE
Q ss_conf 28838998699899999999999889889998937--99998608998999978546988899999999857--898399
Q gi|254780916|r 9 RHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKI--PIVPII 84 (482)
Q Consensus 9 ~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~--p~ipvI 84 (482)
...+|++|||+......+...|... +.+....+. ++.......+|++++|..|++.+|+.++..++... ..+|++
T Consensus 154 ~~~~il~v~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~~~~~~~~d~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~i~ 232 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILKEE-FRVDVLSDPEEALIRAAEGNYDLIIVSASFENYDPLRLCSQLRSKERTRYVPIL 232 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHH-CCEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 6761999879679999999997533-246885486999987435797689975656766468999999714343573299
Q ss_pred EEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 992689999999888505743222222222222222222222
Q gi|254780916|r 85 VQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALRE 126 (482)
Q Consensus 85 iiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~ 126 (482)
.++..++......+...|+.+|+.+|++..++...+...+++
T Consensus 233 ~~~~~~~~~~~~~~~~~g~~d~~~~~~~~~e~~~r~~~~~~~ 274 (457)
T PRK09581 233 LLVDEDEDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred EEECCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 995688616676664146522884378627555879999998
No 151
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=98.52 E-value=5.8e-07 Score=68.82 Aligned_cols=53 Identities=23% Similarity=0.372 Sum_probs=48.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCC
Q ss_conf 838998699899999999999889889998937--99998608998999978546
Q gi|254780916|r 11 KRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINC 63 (482)
Q Consensus 11 ~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP 63 (482)
.|||||||++.++..++.+|+..||+|.+++++ +++.+.+.+||+|++|+.||
T Consensus 1 ~kVLivdD~~~~~~~l~~~l~~~g~~v~~~~~g~~~~~~~~~~~~dlil~D~~mP 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEKPDLILLDIMMP 55 (55)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 9899993799999999999997899999988999999999749999999967687
No 152
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.51 E-value=4.8e-06 Score=62.38 Aligned_cols=215 Identities=15% Similarity=0.156 Sum_probs=127.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC---CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 4320488732777436799999984267543321012346---5542100243311255553221110012344667147
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCG---MIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTI 237 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~---~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl 237 (482)
..+.+||+.|.+||||+.+=+++++.++|+ -|.+--++ +++.... ++..||...-..|.+-.|++|.+
T Consensus 317 RGDInILLvGDPgtaKSqlLk~v~~~aPr~--vytsgkgss~~GLTAav~-------rd~~tge~~LeaGALVlAD~Gv~ 387 (682)
T COG1241 317 RGDIHILLVGDPGTAKSQLLKYVAKLAPRG--VYTSGKGSSAAGLTAAVV-------RDKVTGEWVLEAGALVLADGGVC 387 (682)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHCCCE--EEECCCCCCCCCCEEEEE-------ECCCCCEEEEECCEEEEECCCEE
T ss_conf 242269981798251999999988648840--797264125457306999-------70677607886777999249779
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCCCEEEEECCCC-----CCCCCCHH-HHHHHHHHHHHHH----
Q ss_conf 5166420018899988887764200112355--3212343156521433-----21111112-3337999886543----
Q gi|254780916|r 238 VLEEPDALPLAVQGRIYNFIETGKIEFFDSR--GAIRLDVRLIFLTEKN-----LLPQVKSH-VFRKDLYYRISVF---- 305 (482)
Q Consensus 238 ~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiIa~t~~~-----L~~~~~~g-~fr~dLy~rL~~~---- 305 (482)
++||.+.|+...+..|..+++.+.+.--.+. ...++.|-++||+|-- ...-+.++ .|...|.-|--.+
T Consensus 388 cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~ 467 (682)
T COG1241 388 CIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLK 467 (682)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCEEEECCCCEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHHHCCEEEEEC
T ss_conf 99705677767899999998752751205542541114444566518877767999997885589835775177547705
Q ss_pred -----------HHHHHHHHHHH--HH-------------HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC------
Q ss_conf -----------34467787744--22-------------22556677764101122333321111100012233------
Q gi|254780916|r 306 -----------LINISTLRSRS--ED-------------IPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYP------ 353 (482)
Q Consensus 306 -----------~i~iPpLReR~--eD-------------I~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~------ 353 (482)
--+|...+... ++ =+.+++.|+.- +++. ..+.++++|.+.|..|.
T Consensus 468 D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~Y-AR~~--v~P~lt~ea~e~l~~~Yv~~Rk~ 544 (682)
T COG1241 468 DDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISY-ARKN--VTPVLTEEAREELEDYYVEMRKK 544 (682)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-HHCC--CCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 78885335999999999863456532233332222234658999999998-7505--89612899999999999876520
Q ss_pred ---------CCCCHHHHHHHHHHHHHHC---CCCCCCHHHHHHHHC
Q ss_conf ---------8986899999999998743---898106889545421
Q gi|254780916|r 354 ---------WIDNVQELKNILLRAVIGL---KDSHLTEDRFVLLLS 387 (482)
Q Consensus 354 ---------WPGNvREL~n~i~r~~i~~---~~~~i~~~~~~~~l~ 387 (482)
.|=-+|||+.+|+-+-..+ -...++.+|+..++.
T Consensus 545 ~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~ 590 (682)
T COG1241 545 SALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIR 590 (682)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 1223456754561999999999999988654447778899999999
No 153
>pfam06490 FleQ Flagellar regulatory protein FleQ. This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to pfam00072, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (pfam00072).
Probab=98.48 E-value=1.1e-06 Score=66.92 Aligned_cols=106 Identities=18% Similarity=0.183 Sum_probs=81.5
Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHH-HCC-CCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 3899869989999999999988988999893799998-608-99899997854698889999999985789839999268
Q gi|254780916|r 12 RVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSDLSTI-SKI-QVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQTTQ 89 (482)
Q Consensus 12 rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~al~~l-~~~-~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT~~ 89 (482)
||||||||+..+.-++.+|+..|.++..++++++... .+. ...+++.+..++ +..+.++.+.+..|.+||++++.+
T Consensus 1 kILvIddd~~r~~~L~~ILeFlGE~~~~~~~~~~~~~~~~~~~~a~~v~~~~~~--~~~~~l~~l~~~~p~~Pvlllg~~ 78 (109)
T pfam06490 1 KILVIDDDAERRHDLSTILEFLGEQCEAVSSEDLSAALLSSRWEALAVILGSVS--GLADLLKALAKWDPHLPVLLLGEH 78 (109)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCEEEEEECCCC--CHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 989986888999979999986499649954889889886378852999967852--099999999964889999998788
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999998885057432222222222222222222
Q gi|254780916|r 90 DNIKILNCFLYNRISKFFLNLVSRKQLCDSIICAL 124 (482)
Q Consensus 90 ~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al 124 (482)
++... ...+..-+.+|++-.+|.+.++++.
T Consensus 79 ~~~~~-----~~nvvg~Le~Pl~Y~qL~daLh~cQ 108 (109)
T pfam06490 79 DSAAE-----LANVIGELEEPLNYPQLTDLLHRCQ 108 (109)
T ss_pred CCHHH-----CCCEEEEECCCCCHHHHHHHHHHHC
T ss_conf 75212-----0552587078898799999998752
No 154
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.47 E-value=3.3e-07 Score=70.57 Aligned_cols=221 Identities=17% Similarity=0.232 Sum_probs=131.4
Q ss_pred CCCCCCCCCC-CCCCCC--CCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCCC
Q ss_conf 2211111111-222222--22222222223443204887327774367999999842675--433210123465542100
Q gi|254780916|r 133 ENEHCALDSL-IAVSPA--MIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKR--AFFPFFIVNCGMIDQDKI 207 (482)
Q Consensus 133 ~~~~~~~~~L-iG~S~~--m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r--~~~~fi~v~c~~~~~~~~ 207 (482)
.+...+|+.+ +|.|-. .......+..-+..--|++|.|.+|.||+++-++|-+.-.. .+...+-+.+ +.+
T Consensus 112 Ln~~yTFdnFVvG~sN~lA~aAA~~Va~~pg~~yNPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~ta-----e~F 186 (447)
T PRK00149 112 LNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVSS-----EKF 186 (447)
T ss_pred CCCCCCCCCCEECCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEH-----HHH
T ss_conf 885560326222698599999999998376767785589779988788999999999998589972899549-----999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHH--HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 243311255553221110012344667147516642001--889998888776420011235532123431565214332
Q gi|254780916|r 208 EKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALP--LAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNL 285 (482)
Q Consensus 208 e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~--~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L 285 (482)
..++-..-+ .+......-.+..+ -.|++|+|+-+. ..+|.-++..+..-. ..+=+||.++.+.+
T Consensus 187 ~~~~v~al~--~~~~~~Fr~~yr~~--DvLliDDiqfl~gk~~tqeeff~~fn~l~----------~~~kqiv~tsd~~P 252 (447)
T PRK00149 187 TNDFVKALR--NNAMEEFKEKYRSV--DVLLIDDIQFLAGKEKTQEEFFHTFNALH----------ENNKQIVITSDRPP 252 (447)
T ss_pred HHHHHHHHH--CCCHHHHHHHHHCC--CEEEECHHHHHHCCHHHHHHHHHHHHHHH----------HCCCEEEEECCCCH
T ss_conf 999999985--18699999999728--85432148886055779999999999999----------84996899578896
Q ss_pred CCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 111111233379998865---43344677877442222556677764101122333321111100012233898689999
Q gi|254780916|r 286 LPQVKSHVFRKDLYYRIS---VFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELK 362 (482)
Q Consensus 286 ~~~~~~g~fr~dLy~rL~---~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~ 362 (482)
.++- .|.+.|.-|++ +..|.-|-+--|.. ++++.++..+. .+++++++.+.. ...+|||||+
T Consensus 253 ~~l~---~l~~rL~SRf~~Gl~~~i~~Pd~e~r~~--------Il~~k~~~~~~---~l~~~v~~~iA~-~~~~nvR~Le 317 (447)
T PRK00149 253 KELE---GLEDRLRSRFEWGLTVDIEPPDLETRVA--------ILQKKAEEEGI---NLPNEVLEFIAK-RIRSNIRELE 317 (447)
T ss_pred HHCC---CCCHHHHHHHHCCEEEECCCCCHHHHHH--------HHHHHHHHCCC---CCCHHHHHHHHH-HCCCCHHHHH
T ss_conf 7656---5117788676376265105999999999--------99999997289---999899999997-1268899999
Q ss_pred HHHHHHHHH--CCCCCCCHHHHHHHHC
Q ss_conf 999999874--3898106889545421
Q gi|254780916|r 363 NILLRAVIG--LKDSHLTEDRFVLLLS 387 (482)
Q Consensus 363 n~i~r~~i~--~~~~~i~~~~~~~~l~ 387 (482)
.++-++... ..+..|+.+.+...+.
T Consensus 318 Gal~~l~a~~~~~~~~i~~~~~~~~l~ 344 (447)
T PRK00149 318 GALNRLVAYASLTGRPITLELAKEALK 344 (447)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 999999999998689999999999999
No 155
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1e-07 Score=74.17 Aligned_cols=140 Identities=16% Similarity=0.139 Sum_probs=94.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH------------------CCC--------C
Q ss_conf 11111112222222222222222344320488732777436799999984------------------267--------5
Q gi|254780916|r 136 HCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHE------------------SGK--------R 189 (482)
Q Consensus 136 ~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~------------------~s~--------r 189 (482)
...+.+++|++.+ .+.+.-+|....++|+.|++||||+++|.-+.. .+. -
T Consensus 175 ~~D~~DV~GQ~~A----KrAleiAAAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~~~~~~~~~~~ 250 (490)
T COG0606 175 APDFKDVKGQEQA----KRALEIAAAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLK 250 (490)
T ss_pred CCCHHHHCCCHHH----HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 7666664384999----999999984388678756998865676423102599987088899988876354324678641
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHH--CCCCCC
Q ss_conf 433210123465542100243311255553221110012344667147516642001889998888776420--011235
Q gi|254780916|r 190 AFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGK--IEFFDS 267 (482)
Q Consensus 190 ~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~--~~~~g~ 267 (482)
...||..=.-+ .=...|.| |...-++|-+-.|+||.|||||..+-...+=..|-.=|++|+ ++|.++
T Consensus 251 ~~rPFr~PHHs-----aS~~aLvG------GG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~ 319 (490)
T COG0606 251 IHRPFRAPHHS-----ASLAALVG------GGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGS 319 (490)
T ss_pred EECCCCCCCCC-----CHHHHHHC------CCCCCCCCCEEEECCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 10787688740-----22889737------89988987354303877886144210599999973741258179997587
Q ss_pred CCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 53212343156521433211111
Q gi|254780916|r 268 RGAIRLDVRLIFLTEKNLLPQVK 290 (482)
Q Consensus 268 ~~~~~~~~RiIa~t~~~L~~~~~ 290 (482)
.-..+.+|.+|+++|-.+--.-.
T Consensus 320 ~v~ypa~Fqlv~AmNpcpcG~~~ 342 (490)
T COG0606 320 KVTYPARFQLVAAMNPCPCGNLG 342 (490)
T ss_pred EEEEEEEEEEHHHCCCCCCCCCC
T ss_conf 16872126775223999764788
No 156
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=98.45 E-value=4.9e-07 Score=69.39 Aligned_cols=200 Identities=16% Similarity=0.123 Sum_probs=113.5
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH-CCCCCEEEEECCCCH----HHHHHHHHCCCCCCCCCCCCCCCCCCC-------
Q ss_conf 99899997854698889999999985-789839999268999----999988850574322222222222222-------
Q gi|254780916|r 52 QVNVIFLSLINCEDDKENILKNIVDK-IPIVPIIVQTTQDNI----KILNCFLYNRISKFFLNLVSRKQLCDS------- 119 (482)
Q Consensus 52 ~~dlillD~~mP~~dGlell~~i~~~-~p~ipvIiiT~~~~~----~~~~~a~~~g~~d~l~KP~~~~~L~~~------- 119 (482)
.+||.++|. =.++|..+-+. ..++|-.-....+.. .........--..++++|...+..++-
T Consensus 35 g~~VyIC~e------C~~lc~~~l~e~~~~~~~~~~gerd~~~~~~~~~~~~~~~~~~~~lP~P~eik~~LD~YVIGQe~ 108 (452)
T TIGR00382 35 GPGVYICDE------CIELCHDILEEELNSLLALKTGERDGTRLRRKESKEVEEELELSELPTPKEIKAHLDEYVIGQEQ 108 (452)
T ss_pred CCCCEECHH------HHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCC
T ss_conf 898227512------89988887766542000000254310235654202456666652478827999972136123101
Q ss_pred --------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf --------222222222222222111111112222222222222222344320488732777436799999984267543
Q gi|254780916|r 120 --------IICALREGVVPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAF 191 (482)
Q Consensus 120 --------i~~al~~~~~~~~~~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~ 191 (482)
|-+..+|-.......+....+ |. --.+.++.+=-+.++||+.|+||+||+++|+.+=.. =+
T Consensus 109 AKKVLsVAVYNHYKRl~~~~~n~~~d~~D-----~n---velehleeVEL~KSNILLiGPTGSGKTLLAqTLA~~---L~ 177 (452)
T TIGR00382 109 AKKVLSVAVYNHYKRLNLKEKNKKSDNGD-----SN---VELEHLEEVELSKSNILLIGPTGSGKTLLAQTLARI---LN 177 (452)
T ss_pred CCEEEEEEEHHHHHHHHHHHHCCCCCCCC-----CH---HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH---CC
T ss_conf 05254324112466653243045558840-----00---235444443330066245468885268999999987---38
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC---------CCCCCCCCCCEEEECCCCHHHH--------------H
Q ss_conf 3210123465542100243311255553221110---------0123446671475166420018--------------8
Q gi|254780916|r 192 FPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQF---------LGKFIEANGGTIVLEEPDALPL--------------A 248 (482)
Q Consensus 192 ~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~---------~g~~~~a~~Gtl~l~ei~~L~~--------------~ 248 (482)
=||..-|..+|++. |+++ .+..+ .+=.++|..|.+|+|||+..+. -
T Consensus 178 VPfAiADATtLTEA-------GYVG----EDVENIL~~Llq~ad~DV~kA~kGIiYIDEIDKIaRkSEN~SITRDVSGEG 246 (452)
T TIGR00382 178 VPFAIADATTLTEA-------GYVG----EDVENILLKLLQAADYDVEKAQKGIIYIDEIDKIARKSENPSITRDVSGEG 246 (452)
T ss_pred CCEEECCHHHHHCC-------CCCC----CCHHHHHHHHHHHCCCCHHHHCCCEEEEECCCCHHHHCCCCEEEEEECCCH
T ss_conf 87421111102006-------6424----228899999987414552452785089842231012157780112217554
Q ss_pred HHHHHHHHHHHHHCC---CCCCCCC--------CCCCCEEEEE
Q ss_conf 999888877642001---1235532--------1234315652
Q gi|254780916|r 249 VQGRIYNFIETGKIE---FFDSRGA--------IRLDVRLIFL 280 (482)
Q Consensus 249 ~Q~~Ll~~l~~~~~~---~~g~~~~--------~~~~~RiIa~ 280 (482)
+|+.||..|+ |.+. |-||-+. -++|.=+||+
T Consensus 247 VQQALLKi~E-GTvA~vPPqGGRKHP~~~~iqiDTs~ILFICG 288 (452)
T TIGR00382 247 VQQALLKIIE-GTVANVPPQGGRKHPQQEFIQIDTSNILFICG 288 (452)
T ss_pred HHHHHHHHHH-CCEEEECCCCCCCCCCCCEEEECCCCEEEEEC
T ss_conf 9999998760-32343175448868865768864764001105
No 157
>PRK06893 DNA replication initiation factor; Validated
Probab=98.44 E-value=9.6e-07 Score=67.28 Aligned_cols=207 Identities=15% Similarity=0.086 Sum_probs=118.3
Q ss_pred CCCCCCCCCCC-CCCC-CCCCCCCCCCCCCCCCEE-EEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 22111111112-2222-222222222223443204-88732777436799999984267543321012346554210024
Q gi|254780916|r 133 ENEHCALDSLI-AVSP-AMIQVVDLARKAGDCAIP-IMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEK 209 (482)
Q Consensus 133 ~~~~~~~~~Li-G~S~-~m~~v~~~i~~~a~~~~~-vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~ 209 (482)
..+...++.++ |.+. .+..+.+ ..+....| +.|.|++|+||+++.+++-+.-...+.+-+.+.|.. .
T Consensus 9 ~~~~~tfdnF~~~~n~~~~~~l~~---~~~~~~~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~-------~ 78 (229)
T PRK06893 9 QIDDETLDNFYSDNNLLLLDSLRK---NFIDLKQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK-------S 78 (229)
T ss_pred CCCCCCHHCCCCCCHHHHHHHHHH---HCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHH-------H
T ss_conf 998665431546874999999997---550246987999899999889999999999997189859997377-------5
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHH--HHHHHHHHHHHHHHHCCCCCCCCCCCCCC-EEEEECCCCCC
Q ss_conf 3311255553221110012344667147516642001--88999888877642001123553212343-15652143321
Q gi|254780916|r 210 FLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALP--LAVQGRIYNFIETGKIEFFDSRGAIRLDV-RLIFLTEKNLL 286 (482)
Q Consensus 210 ~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~--~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~-RiIa~t~~~L~ 286 (482)
+-|.. ..- . -++ +...+++|+|+.+. .+.|..|+.++..-. .... .++.+++.++.
T Consensus 79 ~~~~~------~~l--~-~l~--~~d~l~iDDi~~i~g~~~~e~~lF~l~N~l~----------~~~~~~ll~ss~~~p~ 137 (229)
T PRK06893 79 QYFSP------AVL--E-NLE--QQDLVCLDDLQAVIGNEEWELAIFDLFNRIK----------ESGKTLLLISANQSPH 137 (229)
T ss_pred HHCCH------HHH--H-HHH--HCCEEEEECHHHHCCCHHHHHHHHHHHHHHH----------HCCCCEEEEECCCCHH
T ss_conf 64069------999--8-765--4797999672342488389999999999999----------7599179985798833
Q ss_pred CCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 11111233379998865-43344677877442222556677764101122333321111100012233898689999999
Q gi|254780916|r 287 PQVKSHVFRKDLYYRIS-VFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNIL 365 (482)
Q Consensus 287 ~~~~~g~fr~dLy~rL~-~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i 365 (482)
++- ...+||--||+ +..++++|+-+-. -+ ..+.+.+...|. .+++++++++.++ ++.|+++|..++
T Consensus 138 ~l~---~~l~DL~SRl~~~~~~~i~~~dd~~-~~-----~iL~~~a~~rgl---~l~~~v~~yl~~r-~~R~~~~l~~~l 204 (229)
T PRK06893 138 ALQ---IKLPDLASRLTWGEIYQLNDLTDEQ-KI-----EVLQRNAYQRGI---ELSDETANFLLKR-LDRDMHTLFDAL 204 (229)
T ss_pred HHC---CHHHHHHHHHHCCEEEEECCCCHHH-HH-----HHHHHHHHHCCC---CCCHHHHHHHHHH-HCCCHHHHHHHH
T ss_conf 221---0026799999688369966777579-99-----999999996499---9998999999998-347899999999
Q ss_pred HHHHH--HCCCCCCCHHHHH
Q ss_conf 99987--4389810688954
Q gi|254780916|r 366 LRAVI--GLKDSHLTEDRFV 383 (482)
Q Consensus 366 ~r~~i--~~~~~~i~~~~~~ 383 (482)
.++-. +...+.||..-+.
T Consensus 205 ~~Ld~~sl~~kr~iTiplvk 224 (229)
T PRK06893 205 DLLDKASLQAQRKLTIPFVK 224 (229)
T ss_pred HHHHHHHHHHCCCCCHHHHH
T ss_conf 99999999808999999999
No 158
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.44 E-value=7.8e-08 Score=75.01 Aligned_cols=151 Identities=14% Similarity=0.150 Sum_probs=97.0
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC--CCC--CCCCC-CC
Q ss_conf 22222223443204887327774367999999842675433210123465542100243311255--553--22111-00
Q gi|254780916|r 152 VVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVD--LQT--KNSAQ-FL 226 (482)
Q Consensus 152 v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~--~~~--~~~~~-~~ 226 (482)
+.+.+--++-+..+|++.|++||+|+.+||.+...= .++.|...=..-++. -+|+||..+ +.. |...+ ..
T Consensus 28 ~i~l~lLaalagehvlllGPPGtAKS~larrl~~~~--~~a~~FeyLltRFst---PeElFGP~si~~Lk~~g~y~R~t~ 102 (498)
T PRK13531 28 AIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF--QHARAFEYLMTRFST---PEEVFGPLSIQALKDEGRYERLTS 102 (498)
T ss_pred HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH--CCCHHHHHHHHCCCC---HHHHCCCCCHHHHHHCCEEEEECC
T ss_conf 999999999728946988899513889999999985--574089999874698---888538332998711784897226
Q ss_pred CCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE-EEEECCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 12344667147516642001889998888776420011235532123431-56521433211111123337999886543
Q gi|254780916|r 227 GKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVR-LIFLTEKNLLPQVKSHVFRKDLYYRISVF 305 (482)
Q Consensus 227 g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R-iIa~t~~~L~~~~~~g~fr~dLy~rL~~~ 305 (482)
|.+-.|+ ..|||||-.-+.....-||.+|.++.|+. +...+++..+ +|+|||.=+++ +.=-+-||.|+ .+
T Consensus 103 G~LP~A~--iaFLDEIfKansAILNtLLtilNEr~f~n--G~~~~~vPL~~li~ASNElP~~----~~~L~AlyDRf-L~ 173 (498)
T PRK13531 103 GYLPEAE--IVFLDEIWKAGPAILNTLLTAINERRFRN--GAHEEKIPMRLLVAASNELPEA----DSSLEALYDRM-LI 173 (498)
T ss_pred CCCCCCE--EEHHHHHHHCCHHHHHHHHHHHHHHEECC--CCCEECCCHHHHHHCCCCCCCC----CCCHHHHHHHH-HH
T ss_conf 7588661--31578786148899999999864640347--9831304468864304679999----84078888764-41
Q ss_pred HHHHHHHHHHH
Q ss_conf 34467787744
Q gi|254780916|r 306 LINISTLRSRS 316 (482)
Q Consensus 306 ~i~iPpLReR~ 316 (482)
.+.|.|+.++.
T Consensus 174 R~~v~~v~~~~ 184 (498)
T PRK13531 174 RLWLDKVQDKA 184 (498)
T ss_pred HEECCCCCCHH
T ss_conf 02231316766
No 159
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=98.43 E-value=3.7e-07 Score=70.22 Aligned_cols=213 Identities=17% Similarity=0.214 Sum_probs=123.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 222111111112222222222222222344-----------320488732777436799999984267543321012346
Q gi|254780916|r 132 QENEHCALDSLIAVSPAMIQVVDLARKAGD-----------CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCG 200 (482)
Q Consensus 132 ~~~~~~~~~~LiG~S~~m~~v~~~i~~~a~-----------~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~ 200 (482)
.++....+.++-|=...|+++++.+.-=-. -..=||+.|++||||+++|+++-+. .+.-||.|=.|
T Consensus 114 ~E~P~V~y~diGGL~~Q~~E~~E~v~LPlk~PeLF~~vGI~PPKGvLLyGPPGtGKTLlAKAvA~e---t~ATFIrvVgS 190 (364)
T TIGR01242 114 EERPNVSYEDIGGLEKQIREIREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE---TNATFIRVVGS 190 (364)
T ss_pred ECCCCEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCC---CCCEEEEEEHH
T ss_conf 217823340267878999999888734688831677628898986570075797688999986314---55126886044
Q ss_pred CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC---CCCEEEECCCCHH-----------HHHHHHHHHHHHHH-HHCCCC
Q ss_conf 55421002433112555532211100123446---6714751664200-----------18899988887764-200112
Q gi|254780916|r 201 MIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEA---NGGTIVLEEPDAL-----------PLAVQGRIYNFIET-GKIEFF 265 (482)
Q Consensus 201 ~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a---~~Gtl~l~ei~~L-----------~~~~Q~~Ll~~l~~-~~~~~~ 265 (482)
.+ + ....|+ ||. =..+.|+.| .-..+|+|||+.. ..++|.-|+++|.+ .-|.+-
T Consensus 191 El----V-~KyIGE-----GAr-LV~~~F~LAkEKaPsIiFIDEiDAiaakR~~~~TsGdREV~RTlmQLLAElDGFd~r 259 (364)
T TIGR01242 191 EL----V-RKYIGE-----GAR-LVREVFELAKEKAPSIIFIDEIDAIAAKRVDSSTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred HH----H-HHHHCC-----HHH-HHHHHHHHHHCCCCCEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 44----4-444133-----168-999999985306981686101333543211467787315788999999752488876
Q ss_pred CCCCCCCCCCEEEEECCCC-C--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 3553212343156521433-2--111111233379998865433446778774422225566777641011223333211
Q gi|254780916|r 266 DSRGAIRLDVRLIFLTEKN-L--LPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISIS 342 (482)
Q Consensus 266 g~~~~~~~~~RiIa~t~~~-L--~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls 342 (482)
| ||.||+|||+. + ..+..-|+|.. .+.+-+|.++=|.+ | |+-+.++.... ..++
T Consensus 260 g-------~VkviaATNR~DilDPA~LRPGRFDR-------~IEVPlP~~~GR~e-I-------lkiHTr~~~la-~dVd 316 (364)
T TIGR01242 260 G-------NVKVIAATNRPDILDPAILRPGRFDR-------IIEVPLPDFEGRLE-I-------LKIHTRKMKLA-EDVD 316 (364)
T ss_pred C-------CEEEEEECCCCHHCCCCCCCCCCCCC-------EEECCCCCCCCHHH-H-------HHHHHCCCCCC-CCCC
T ss_conf 7-------61688720762020432148886132-------57316978322056-6-------55521000012-3568
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHH---CCCCCCCHHHHHH
Q ss_conf 11100012233898689999999999874---3898106889545
Q gi|254780916|r 343 DKALSLLTKYPWIDNVQELKNILLRAVIG---LKDSHLTEDRFVL 384 (482)
Q Consensus 343 ~~a~~~L~~y~WPGNvREL~n~i~r~~i~---~~~~~i~~~~~~~ 384 (482)
=++++.+..= .. -.+|+.+|--|-.. .....+|.+|+..
T Consensus 317 l~~~A~~TeG-~s--GAdlKAi~tEAG~~AIR~~r~~vT~~Df~k 358 (364)
T TIGR01242 317 LEAIAKLTEG-AS--GADLKAICTEAGMFAIREERDYVTMDDFLK 358 (364)
T ss_pred HHHHHHHHCC-CC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7999987478-86--630423434620477774456766999999
No 160
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=98.42 E-value=1.4e-07 Score=73.24 Aligned_cols=228 Identities=21% Similarity=0.257 Sum_probs=131.0
Q ss_pred CCCCCC--CCCCCCCCCCCCCCCCCCCCC---CCEEEEEECCCCCHHHHHHHHH----HHCCCCCCCC-C--CCCCCCCC
Q ss_conf 111111--112222222222222222344---3204887327774367999999----8426754332-1--01234655
Q gi|254780916|r 135 EHCALD--SLIAVSPAMIQVVDLARKAGD---CAIPIMIQGEFGVGKKRLSRFI----HESGKRAFFP-F--FIVNCGMI 202 (482)
Q Consensus 135 ~~~~~~--~LiG~S~~m~~v~~~i~~~a~---~~~~vli~Ge~GtGK~~~A~~i----H~~s~r~~~~-f--i~v~c~~~ 202 (482)
.....+ .|+|....|..+...+.-+-. ...+|||.|+|||||+++++++ +..+..++.. | +.|||..+
T Consensus 10 ~dY~Pden~i~hRdeqI~~l~~~L~~~l~PG~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~~~ 89 (383)
T TIGR02928 10 PDYVPDENRIVHRDEQIEELAKALRPILRPGSRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQIL 89 (383)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 57702742466867899999999887506748987258878889878899999999999986226997158999778546
Q ss_pred CCC-C----CHHHH----HCCCCCCCCCCCCC----CC-CCCCCCCCE--EEECCCCHH--HHHHHH-----HHHHHHHH
Q ss_conf 421-0----02433----11255553221110----01-234466714--751664200--188999-----88887764
Q gi|254780916|r 203 DQD-K----IEKFL----FGDVDLQTKNSAQF----LG-KFIEANGGT--IVLEEPDAL--PLAVQG-----RIYNFIET 259 (482)
Q Consensus 203 ~~~-~----~e~~l----FG~~~~~~~~~~~~----~g-~~~~a~~Gt--l~l~ei~~L--~~~~Q~-----~Ll~~l~~ 259 (482)
+.. . +-..| +|..=..||=..++ .- .++...+|+ ++||||+.| .. ... -|-.+...
T Consensus 90 ~T~y~~~~~L~~~ln~~~~~~~vP~tG~s~~~~~~~l~~~l~~~~~~~~~ivLDEiD~Lv~~~-~d~PAyS~~LY~L~Ra 168 (383)
T TIGR02928 90 DTSYQVLVELANQLNRRGSGEEVPTTGLSTSEVFRELYKELNRERGDSLIIVLDEIDKLVRKD-DDDPAYSKLLYQLSRA 168 (383)
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCC-CCCHHHHHHHHHHHHH
T ss_conf 846999999999851577888898877878999999999983201887999862310221588-8880787885343310
Q ss_pred HHCCCCCCCCCCC-CCCEEEEECCC-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC-
Q ss_conf 2001123553212-34315652143-----321111112333799988654334467787744-222255667776410-
Q gi|254780916|r 260 GKIEFFDSRGAIR-LDVRLIFLTEK-----NLLPQVKSHVFRKDLYYRISVFLINISTLRSRS-EDIPWLVHFFLQSFC- 331 (482)
Q Consensus 260 ~~~~~~g~~~~~~-~~~RiIa~t~~-----~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~-eDI~~L~~~fl~~~~- 331 (482)
.++.... +.+=||+.||. +|...|++- |+--.|..||=-+.- .|| |+.=.
T Consensus 169 ------~~~~~~~~~~vgvIgISND~~f~~~Ld~RVkSs---------L~~eei~FpPYdA~eL~~I-------L~~R~v 226 (383)
T TIGR02928 169 ------RENGDLENAKVGVIGISNDLKFRENLDPRVKSS---------LCEEEIVFPPYDAEELRDI-------LENRAV 226 (383)
T ss_pred ------HHCCCCCCCCEEEEEEECCCHHHHHCCCCEECC---------CCCCCCEECCCCHHHHHHH-------HHHHHH
T ss_conf ------003577885348999865714364457530132---------4874004079886999999-------972031
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHH---HCCCCCCCHHHHHHHH
Q ss_conf 11223333211111000122338--9868999999999987---4389810688954542
Q gi|254780916|r 332 TKNAIKQISISDKALSLLTKYPW--IDNVQELKNILLRAVI---GLKDSHLTEDRFVLLL 386 (482)
Q Consensus 332 ~~~~~~~~~ls~~a~~~L~~y~W--PGNvREL~n~i~r~~i---~~~~~~i~~~~~~~~l 386 (482)
+. .-..=-++++++.+-.++.= -|+-|.=--+++.|.- ......++.+|+..+-
T Consensus 227 ~~-AF~dGvl~d~VI~lcAA~aAq~hGDAR~AiDLLR~AGe~A~~~g~~~Vt~~HV~~A~ 285 (383)
T TIGR02928 227 EK-AFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEEAQ 285 (383)
T ss_pred HH-CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 20-336885462279999998620678789999999987687531576310088899999
No 161
>KOG0731 consensus
Probab=98.42 E-value=6.8e-07 Score=68.37 Aligned_cols=216 Identities=17% Similarity=0.191 Sum_probs=123.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 2211111111222222222222222----------234432048873277743679999998426754332101234655
Q gi|254780916|r 133 ENEHCALDSLIAVSPAMIQVVDLAR----------KAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMI 202 (482)
Q Consensus 133 ~~~~~~~~~LiG~S~~m~~v~~~i~----------~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~ 202 (482)
......|.+.-|...+-+++.+.+. .=|....=|||+|++||||+++|+++-.. ++=||+.++.+.+
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE---AgVPF~svSGSEF 380 (774)
T KOG0731 304 GNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSVSGSEF 380 (774)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCC---CCCCEEEECHHHH
T ss_conf 8988760102670899999999999843989998747767675178789998678999988530---5896464133788
Q ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC---CEEEECCCCHHHHHHHH-----------H-HHHHHHHHHCCCCCC
Q ss_conf 42100243311255553221110012344667---14751664200188999-----------8-888776420011235
Q gi|254780916|r 203 DQDKIEKFLFGDVDLQTKNSAQFLGKFIEANG---GTIVLEEPDALPLAVQG-----------R-IYNFIETGKIEFFDS 267 (482)
Q Consensus 203 ~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~---Gtl~l~ei~~L~~~~Q~-----------~-Ll~~l~~~~~~~~g~ 267 (482)
- |+|+-. ..++...+|..|.. -.+|+|||+.....-+. . |-++|-+ +++
T Consensus 381 v------E~~~g~-----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~e-----mDg 444 (774)
T KOG0731 381 V------EMFVGV-----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVE-----MDG 444 (774)
T ss_pred H------HHHCCC-----CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-----HCC
T ss_conf 8------876034-----348889999874326980797145420031255666678880788899988787-----527
Q ss_pred CCCCCCCCEEEEECCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 53212343156521433---211111123337999886543344677877442222556677764101122333321111
Q gi|254780916|r 268 RGAIRLDVRLIFLTEKN---LLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDK 344 (482)
Q Consensus 268 ~~~~~~~~RiIa~t~~~---L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~ 344 (482)
.... ..|=++|+||+. -..++.-|+|.. .+.|.+|...+|. +|.. -+.+..... .++.
T Consensus 445 f~~~-~~vi~~a~tnr~d~ld~allrpGRfdr-------~i~i~~p~~~~r~-~i~~-------~h~~~~~~~---~e~~ 505 (774)
T KOG0731 445 FETS-KGVIVLAATNRPDILDPALLRPGRFDR-------QIQIDLPDVKGRA-SILK-------VHLRKKKLD---DEDV 505 (774)
T ss_pred CCCC-CCEEEEECCCCCCCCCHHHCCCCCCCC-------CEECCCCCHHHHH-HHHH-------HHHHCCCCC---CCHH
T ss_conf 7677-847998116886642887649875555-------2324698514168-9999-------986215776---3156
Q ss_pred CCCCCCCCCCCCCH-HHHHHHHHHHHHHC---CCCCCCHHHHHHHHC
Q ss_conf 10001223389868-99999999998743---898106889545421
Q gi|254780916|r 345 ALSLLTKYPWIDNV-QELKNILLRAVIGL---KDSHLTEDRFVLLLS 387 (482)
Q Consensus 345 a~~~L~~y~WPGNv-REL~n~i~r~~i~~---~~~~i~~~~~~~~l~ 387 (482)
-+.. .+-.=||+. -+|.|++-.+.+.+ ....|+..++...+.
T Consensus 506 dl~~-~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~ 551 (774)
T KOG0731 506 DLSK-LASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIE 551 (774)
T ss_pred HHHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 7999-986089996789986424999999873367301564999999
No 162
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=98.42 E-value=7e-08 Score=75.35 Aligned_cols=96 Identities=19% Similarity=0.238 Sum_probs=61.6
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC---CCCCEEEECCC
Q ss_conf 887327774367999999842675433210123465542100243311255553221110012344---66714751664
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIE---ANGGTIVLEEP 242 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~---a~~Gtl~l~ei 242 (482)
||+.|++||||+++|++|-+.. +.+|+.++|+.+..... |.. ...-...|.. .+...||+||+
T Consensus 1 iLl~GppGtGKT~~a~~la~~~---~~~~~~v~~~~~~~~~~-----g~~------~~~i~~~f~~a~~~~p~Il~iDe~ 66 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKEL---GAPFIEISGSELVSKYV-----GES------EKRLRELFEAAKKLAPCVIFIDEI 66 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHH---CCCCEECCCCCCCCCCC-----CHH------HHHHHHHHHHHHHCCCCEEEECHH
T ss_conf 9878999999999999999997---89853324201222334-----506------888999999999749918983116
Q ss_pred CHHHHH-----------HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 200188-----------99988887764200112355321234315652143
Q gi|254780916|r 243 DALPLA-----------VQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEK 283 (482)
Q Consensus 243 ~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~ 283 (482)
+.+... .+..|+..++.- .....++.+|++||.
T Consensus 67 d~l~~~~~~~~~~~~~~~~~~ll~~ld~~--------~~~~~~v~~I~tTN~ 110 (131)
T pfam00004 67 DALAGSRGSGGDSESRRVVNQLLTELDGF--------TSSLSKVIVIAATNR 110 (131)
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHC--------CCCCCCEEEEEECCC
T ss_conf 77751678888875132687899998502--------246887699997599
No 163
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=1.3e-05 Score=59.30 Aligned_cols=222 Identities=17% Similarity=0.207 Sum_probs=123.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCC----CCC-CCCCCCCCCCCCCH
Q ss_conf 2111111112222222222222222344320488732777436799999984267543----321-01234655421002
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAF----FPF-FIVNCGMIDQDKIE 208 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~----~~f-i~v~c~~~~~~~~e 208 (482)
.....|..++|+.-..+.+...+.. .....--|++|..|+||+.+||.+-+.-.-.+ .|- .--+|..+.+..+-
T Consensus 10 ~RP~~f~e~vGQ~~v~~~l~nal~~-~rl~haylf~G~rGvGKTt~aRi~Ak~lnC~~~~~~~pcg~C~~C~~i~~g~~~ 88 (816)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALDG-GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFV 88 (816)
T ss_pred HCCCCHHHHCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 0898576623849999999999970-986314751178988888999999998678999998978775557877558877
Q ss_pred HHHHCCCCCC-CCCCCCCCCCCCCC-------CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
Q ss_conf 4331125555-32211100123446-------671475166420018899988887764200112355321234315652
Q gi|254780916|r 209 KFLFGDVDLQ-TKNSAQFLGKFIEA-------NGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFL 280 (482)
Q Consensus 209 ~~lFG~~~~~-~~~~~~~~g~~~~a-------~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~ 280 (482)
.. =+.++. .....+...+++.+ .--..+|||+|-|+.....-||..|++- +-+|.+|.+
T Consensus 89 d~--iEiDaAS~~~vd~~r~l~~~~~y~p~~~r~KvyiiDEvHmls~~afnalLKtlEep-----------P~hv~Fila 155 (816)
T PRK07003 89 DY--VEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEP-----------PPHVKFILA 155 (816)
T ss_pred CE--EEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCC-----------CCCEEEEEE
T ss_conf 54--78635543576899999986224786674479998415433999999999840379-----------866489995
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 14332111111233379998865433446778774422225566777641011223333211111000122338986899
Q gi|254780916|r 281 TEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQE 360 (482)
Q Consensus 281 t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvRE 360 (482)
|+.. .++- .-....=|-|.|..++ .++| ..| |...+.+.+ ..++++|+.+|.... -|-+|.
T Consensus 156 TTd~-~k~p-~tilSRc~~f~l~~~~---------~~~i---~~~-l~~i~~~E~---i~~e~~al~lia~~a-~GsmRD 216 (816)
T PRK07003 156 TTDP-QKIP-VTVLSRCLQFNLKQMP---------AGHI---VSH-LERILGEER---IAFEPQALRLLARAA-QGSMRD 216 (816)
T ss_pred CCCH-HHCC-HHHHHHHHHCCCCCCC---------HHHH---HHH-HHHHHHHCC---CCCCHHHHHHHHHHC-CCCHHH
T ss_conf 5880-1152-8898777652236799---------9999---999-999999829---977999999999976-773788
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf 99999999874389810688954542124
Q gi|254780916|r 361 LKNILLRAVIGLKDSHLTEDRFVLLLSRE 389 (482)
Q Consensus 361 L~n~i~r~~i~~~~~~i~~~~~~~~l~~~ 389 (482)
=-++..+++..+ ++.|+.+++..-++..
T Consensus 217 alsl~dQaia~~-~g~~~~~~v~~mLG~~ 244 (816)
T PRK07003 217 ALSLTDQAIAYS-ANEVTETAVSGMLGAL 244 (816)
T ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHCCC
T ss_conf 885999999846-9973799999985888
No 164
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.40 E-value=6.6e-07 Score=68.42 Aligned_cols=220 Identities=16% Similarity=0.168 Sum_probs=125.8
Q ss_pred CCCCCCCCCC-CCCCCCCCC--CCCCCCCCCC----CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2211111111-222222222--2222222344----32048873277743679999998426754332101234655421
Q gi|254780916|r 133 ENEHCALDSL-IAVSPAMIQ--VVDLARKAGD----CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQD 205 (482)
Q Consensus 133 ~~~~~~~~~L-iG~S~~m~~--v~~~i~~~a~----~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~ 205 (482)
.+....|+.+ +|.|-.+.. ....+...+. .=-|++|.|.+|.||+++-++|-+.-...+...+-+ +.+
T Consensus 104 lNp~ytFd~FVvG~~N~lA~~aa~~va~~~~~~~g~~yNPLfIyG~~GlGKTHLL~AIgn~i~~~~~kV~Yv-----tae 178 (455)
T PRK12422 104 VDPEMTFANFLVTPENDLPFRILQEFAKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVSALRESGGKILYV-----SSE 178 (455)
T ss_pred CCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE-----CHH
T ss_conf 897783558331586099999999998375535887678758878999978999999999853799869997-----499
Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHH--HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 002433112555532211100123446671475166420018--899988887764200112355321234315652143
Q gi|254780916|r 206 KIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPL--AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEK 283 (482)
Q Consensus 206 ~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~--~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~ 283 (482)
.+..++...-+ .+......-.+..+ -.|++|+|+-+.- .+|.-++..+..=. ..+=+||.++.+
T Consensus 179 ~F~~~~v~ai~--~~~~~~Fr~~yr~~--DvLLIDDIQfl~gK~~tqeEff~tfN~L~----------~~~KQIVitsDr 244 (455)
T PRK12422 179 LFTEHLVSAIR--SGEMQRFRSFYRNV--DALFIEDIEVFSGKGATQEEFFHTFNSLH----------TEGKLIVISSSY 244 (455)
T ss_pred HHHHHHHHHHH--CCCHHHHHHHHHCC--CEEEEEHHHHHHCCHHHHHHHHHHHHHHH----------HCCCEEEEECCC
T ss_conf 99999999997--58899999999638--87763147887284889999999999999----------859969996898
Q ss_pred CCCCCCCHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 32111111233379998865-43--3446778774422225566777641011223333211111000122338986899
Q gi|254780916|r 284 NLLPQVKSHVFRKDLYYRIS-VF--LINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQE 360 (482)
Q Consensus 284 ~L~~~~~~g~fr~dLy~rL~-~~--~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvRE 360 (482)
.+.++- .|.+.|.-|+. ++ .|.-|-+-.|.. ++.+.++..+. .+++++++.+ .-...+||||
T Consensus 245 ~P~el~---~l~~RL~SRf~~GL~v~I~~Pd~etr~~--------Il~~k~~~~~~---~l~~ev~~~i-A~~i~~niRe 309 (455)
T PRK12422 245 APGDLK---AMEERLISRFEWGIAIPIHPLTREGLRS--------FLMRQAEQLSI---RIEETALDFL-IQALSSNVKT 309 (455)
T ss_pred CHHHHH---HHHHHHHHHHHCCEEECCCCCCHHHHHH--------HHHHHHHHCCC---CCCHHHHHHH-HHHHHHHHHH
T ss_conf 957651---2689999886376132168999899999--------99999987188---8844689999-9997551799
Q ss_pred HHHHHHHHHHH-----CCCCCCCHHHHHHHH
Q ss_conf 99999999874-----389810688954542
Q gi|254780916|r 361 LKNILLRAVIG-----LKDSHLTEDRFVLLL 386 (482)
Q Consensus 361 L~n~i~r~~i~-----~~~~~i~~~~~~~~l 386 (482)
|+..+.++... ..+..++.+.+...+
T Consensus 310 LeGal~~l~~~~~~~~~~~~~i~~~~~~~~l 340 (455)
T PRK12422 310 LLHALTLLAKRVAYKKLSHQLLYEDDIKALL 340 (455)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 9999999999999871568836499999999
No 165
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.39 E-value=9e-06 Score=60.42 Aligned_cols=112 Identities=11% Similarity=0.091 Sum_probs=87.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHH-HCCC-CCEEEE
Q ss_conf 28838998699899999999999889889998937999986089989999785469888999999998-5789-839999
Q gi|254780916|r 9 RHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSDLSTISKIQVNVIFLSLINCEDDKENILKNIVD-KIPI-VPIIVQ 86 (482)
Q Consensus 9 ~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~al~~l~~~~~dlillD~~mP~~dGlell~~i~~-~~p~-ipvIii 86 (482)
..++||+||+++..+..+...|..+|++|..+.+ ++.+....+|++++|+.||.+++.+.+..... ..+. -++|++
T Consensus 535 ~g~~vlvve~~~~~~~~l~~~L~~~g~~v~~~~~--~~~l~~~~~D~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~il~ 612 (920)
T PRK11107 535 AGKRLLYVEPNSLAAQATLDLLSETPLEVTYSPT--LSQLPEAHYDYLLLGCPVTFREPLTMLHERLAKAKSMTDFLILA 612 (920)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCC--HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 5876999769778999999999974964575178--87751368887996166666540667899986300357846997
Q ss_pred ECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 268999999988850574322222222222222222
Q gi|254780916|r 87 TTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIIC 122 (482)
Q Consensus 87 T~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~ 122 (482)
+..............|...++.||+...+|...+..
T Consensus 613 ~~s~~~~~~~~~~~~~~~~~L~kPv~~~~L~~~L~~ 648 (920)
T PRK11107 613 LPCHEQVNAEQLKQPGADACLSKPLSETRLLPALLT 648 (920)
T ss_pred ECCCCHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHC
T ss_conf 156434557887642530211277768899998722
No 166
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=98.35 E-value=2.9e-06 Score=63.93 Aligned_cols=215 Identities=17% Similarity=0.215 Sum_probs=133.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHC---CCCCCCCCCC-CCCCCCCC---
Q ss_conf 2221111111122222222222222223443204887327774367999999842---6754332101-23465542---
Q gi|254780916|r 132 QENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES---GKRAFFPFFI-VNCGMIDQ--- 204 (482)
Q Consensus 132 ~~~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~---s~r~~~~fi~-v~c~~~~~--- 204 (482)
+.-....|++++|++-..+.+...+.. ..-..-=|..|+.||||+.+||-+=.. ......|-=. =+|-++..
T Consensus 6 RKyRP~~F~d~~GQ~~iv~tL~NAi~~-~ri~HAYLF~GpRGtGKTS~ARIfAKaLNC~~~~~~PCn~C~~C~~i~~g~~ 84 (363)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVKTLKNAIKN-GRIAHAYLFSGPRGTGKTSIARIFAKALNCQGPDGEPCNECESCKEINSGSS 84 (363)
T ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCC
T ss_conf 223788611023517999999999971-8966234502859976355899999986588787787777502277652898
Q ss_pred -CCCHHHHHCCCCCCC--CCCCCCCCCCCC----CCC---CEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf -100243311255553--221110012344----667---1475166420018899988887764200112355321234
Q gi|254780916|r 205 -DKIEKFLFGDVDLQT--KNSAQFLGKFIE----ANG---GTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLD 274 (482)
Q Consensus 205 -~~~e~~lFG~~~~~~--~~~~~~~g~~~~----a~~---Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 274 (482)
|.+| -+|+. |-..-| -+.+. -.. =.-.+||+|=||...=.-||..|||. |.+
T Consensus 85 ~DviE------iDAASN~gVD~IR-~l~e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTLEEP-----------P~h 146 (363)
T TIGR02397 85 LDVIE------IDAASNNGVDDIR-ELRENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTLEEP-----------PEH 146 (363)
T ss_pred CCEEE------ECCCCCCCHHHHH-HHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC-----------CCC
T ss_conf 66688------6486568788999-99873036875544335887323028656899987652279-----------876
Q ss_pred CEEEEECCCC----CCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 3156521433----2111111233--379998865433446778774422225566777641011223333211111000
Q gi|254780916|r 275 VRLIFLTEKN----LLPQVKSHVF--RKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSL 348 (482)
Q Consensus 275 ~RiIa~t~~~----L~~~~~~g~f--r~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~ 348 (482)
|-+|.||+.. ..=+....+| ++ |...- ++.| |+..+.+.| ..++++|+++
T Consensus 147 V~FIlATTE~~KiP~TIlSRCQrF~Fk~----------i~~~~----------i~~~-L~~I~~~E~---I~~e~~AL~~ 202 (363)
T TIGR02397 147 VVFILATTEPHKIPATILSRCQRFDFKR----------IPLED----------IVER-LKKILDKEG---IKIEDEALEL 202 (363)
T ss_pred EEEEEECCCHHHCCCCCEEECEEECCCC----------CCHHH----------HHHH-HHHHHHHHC---CCCCHHHHHH
T ss_conf 2888734871120554021000312678----------99899----------9999-999998708---8317789999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHCCCC
Q ss_conf 12233898689999999999874389--8106889545421244
Q gi|254780916|r 349 LTKYPWIDNVQELKNILLRAVIGLKD--SHLTEDRFVLLLSREG 390 (482)
Q Consensus 349 L~~y~WPGNvREL~n~i~r~~i~~~~--~~i~~~~~~~~l~~~~ 390 (482)
+..+. -|=+|.=.+++.+++....+ +.|+.+++...++-..
T Consensus 203 IA~~a-~GS~RDAlsllDQ~~~~~~~~DG~i~~~~v~~~lGl~~ 245 (363)
T TIGR02397 203 IARAA-DGSMRDALSLLDQAISFGNGSDGKITYEDVNEMLGLVD 245 (363)
T ss_pred HHHHC-CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC
T ss_conf 99962-89610688999999982688788657899999835777
No 167
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=5.7e-06 Score=61.83 Aligned_cols=219 Identities=15% Similarity=0.150 Sum_probs=125.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC----CCC-CCCC-CCCCCCCCC---
Q ss_conf 2111111112222222222222222344320488732777436799999984267----543-3210-123465542---
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGK----RAF-FPFF-IVNCGMIDQ--- 204 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~----r~~-~~fi-~v~c~~~~~--- 204 (482)
-....|++++|+....+.+...+.. .....-.|+.|+.||||+.+||.+-..=. ..+ .|-- --+|..+..
T Consensus 11 YRP~~F~dvVGQ~~vv~~L~nai~~-~ri~HAyLF~GprGtGKTT~ArilAkaLnC~~~~~~~~pCg~C~~C~~I~~g~~ 89 (462)
T PRK06305 11 YRPQTFSEILGQDAVVTVLKNALRF-NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAICKEISSGTS 89 (462)
T ss_pred HCCCCHHHHCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf 3889876604909999999999984-997623430389985999999999999679999888898876688899863899
Q ss_pred -CCCHHHHHCCCCCCC--CCCCCCC----CCCCCCC--CCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf -100243311255553--2211100----1234466--714751664200188999888877642001123553212343
Q gi|254780916|r 205 -DKIEKFLFGDVDLQT--KNSAQFL----GKFIEAN--GGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDV 275 (482)
Q Consensus 205 -~~~e~~lFG~~~~~~--~~~~~~~----g~~~~a~--~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 275 (482)
+.+| .+++. |-..-|. -.+.-+. .-..+|||++.|+...+..||+.|++. +.++
T Consensus 90 ~DViE------iDaAs~~gVddIRel~e~v~~~P~~~~yKVyIIDEvhmLs~~AfNALLKtLEEP-----------P~~v 152 (462)
T PRK06305 90 LDVIE------IDGASHRGIEDIRQINETVLFTPSKSQYKIYIIDEVHMLTKEAFNSLLKTLEEP-----------PQHV 152 (462)
T ss_pred CCEEE------ECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHHCC-----------CCCE
T ss_conf 98686------435534466899999977100886775059998152117999999999986189-----------8774
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 15652143321111112333799988654334467787744222255667776410112233332111110001223389
Q gi|254780916|r 276 RLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWI 355 (482)
Q Consensus 276 RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WP 355 (482)
++|.+|+.. .++... ..-| +-.+.+.++. .+|| +.| |...+.+.+ ..++++|+.++.... -
T Consensus 153 ~FILaTTe~-~KIp~T------IlSR--CQrf~F~~i~--~~~I---~~~-L~~I~~~E~---i~~e~~AL~lIA~~a-~ 213 (462)
T PRK06305 153 KFFLATTEI-HKIPGT------ILSR--CQKMHLKRIP--EETI---IDK-LALIAQQDG---IETSREALLPIARAA-Q 213 (462)
T ss_pred EEEEEECCH-HHCCHH------HHHH--HHEEECCCCC--HHHH---HHH-HHHHHHHCC---CCCCHHHHHHHHHHC-C
T ss_conf 999981881-428547------8765--4023325799--9999---999-999999839---985999999999985-8
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
Q ss_conf 86899999999998743898106889545421244
Q gi|254780916|r 356 DNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREG 390 (482)
Q Consensus 356 GNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~~ 390 (482)
|-+|.=.+++.+++.. .++.|+.+++...++-..
T Consensus 214 GsmRDAlslLDQ~i~~-~~~~it~~~V~~~lG~v~ 247 (462)
T PRK06305 214 GSLRDAESLYDYVVGL-FPKSLSPDTVAKALGLLS 247 (462)
T ss_pred CCHHHHHHHHHHHHHH-CCCCCCHHHHHHHHCCCC
T ss_conf 9587899999999984-799868999999868998
No 168
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=2.8e-06 Score=63.97 Aligned_cols=223 Identities=14% Similarity=0.182 Sum_probs=128.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCC-----CCCCCCCCCCCCHH
Q ss_conf 1111111122222222222222223443204887327774367999999842675433210-----12346554210024
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFF-----IVNCGMIDQDKIEK 209 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi-----~v~c~~~~~~~~e~ 209 (482)
.-..|+.+||+....+.+...+.. .....--|+.|+.||||+.+||.+-..-.-.++|-. --+|..|....--+
T Consensus 10 RP~~F~eviGQe~v~~~L~~Ai~~-gri~HAYLFsGprG~GKTt~ARilAkaLNC~~~~~~~PCg~C~sC~~i~~g~~~~ 88 (775)
T PRK07764 10 RPATFAEVVGQEHVTEPLSTALDS-GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTSTPCGVCDSCVALAPGGPGS 88 (775)
T ss_pred CCCCHHHHCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCC
T ss_conf 788766622859999999999981-9976337623788878889999999996689999989888876378886389888
Q ss_pred HHHCCCCCC-CCCCCCCCCCCCC-------CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC
Q ss_conf 331125555-3221110012344-------66714751664200188999888877642001123553212343156521
Q gi|254780916|r 210 FLFGDVDLQ-TKNSAQFLGKFIE-------ANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLT 281 (482)
Q Consensus 210 ~lFG~~~~~-~~~~~~~~g~~~~-------a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t 281 (482)
.-+=+.++. .+...+-..+.+. ..--..+|||+|-|+......||+.|++- +.++-+|.+|
T Consensus 89 ~DviEiDAAS~~gVddiReL~e~~~y~P~~~ryKVyIIDEaHmls~~afNALLKtLEEP-----------P~hvvFIlaT 157 (775)
T PRK07764 89 LDVVEIDAASHGGVDDARELRERAFFAPAQSRYRIFIIDEAHMVTTAGFNALLKIVEEP-----------PEHLIFIFAT 157 (775)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHCHHHHHHHHHHHCCC-----------CCCEEEEEEC
T ss_conf 86687315655688999999985476876786359998535440799999998862278-----------6462799954
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 433211111123337999886543344-6778774422225566777641011223333211111000122338986899
Q gi|254780916|r 282 EKNLLPQVKSHVFRKDLYYRISVFLIN-ISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQE 360 (482)
Q Consensus 282 ~~~L~~~~~~g~fr~dLy~rL~~~~i~-iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvRE 360 (482)
+.. +++... ..-|-..+.++ || .++| ..+|.+.|.+.|. .++++++.++..... |-+|.
T Consensus 158 Tep-~kip~T------I~SRcq~f~Fr~i~-----~~~~----~~~l~~i~~~E~i---~~~~~al~li~r~~~-Gs~RD 217 (775)
T PRK07764 158 TEP-EKVIGT------IRSRTHHYPFRLVP-----PGTM----RPYLERICAQEGV---VVDDAVLPLVIRAGG-GSPRD 217 (775)
T ss_pred CCH-HHCCHH------HHHHCCCCCCCCCC-----HHHH----HHHHHHHHHHCCC---CCCHHHHHHHHHHCC-CCHHH
T ss_conf 873-547167------76410234526699-----9999----9999999998399---879899999999828-96676
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf 99999999874389810688954542124
Q gi|254780916|r 361 LKNILLRAVIGLKDSHLTEDRFVLLLSRE 389 (482)
Q Consensus 361 L~n~i~r~~i~~~~~~i~~~~~~~~l~~~ 389 (482)
=-+++.+++..+.++.|+.++....++..
T Consensus 218 alS~ldQl~a~~~~~~v~~~~a~~llG~~ 246 (775)
T PRK07764 218 TLSVLDQLLAGAGDDGVTYERAVALLGVT 246 (775)
T ss_pred HHHHHHHHHHCCCCCCEEHHHHHHHHCCC
T ss_conf 89999999840488841099999985888
No 169
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=7.1e-06 Score=61.15 Aligned_cols=216 Identities=17% Similarity=0.201 Sum_probs=122.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCC----CCCCCCC-CCCCCCCCCC----C
Q ss_conf 11111111222222222222222234432048873277743679999998426----7543321-0123465542----1
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESG----KRAFFPF-FIVNCGMIDQ----D 205 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s----~r~~~~f-i~v~c~~~~~----~ 205 (482)
....|+.++|+....+.+...+.. .......|+.|+.||||+.+||.+-..= .....|- .--+|..+.. +
T Consensus 9 RP~~F~evIGQe~iv~~L~nAi~~-~Rl~HAYLFsGPrGvGKTt~ArifAkaLnC~~~~~~~PCg~C~sC~~i~~g~hpD 87 (523)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDN-NRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPSSTPCGTCAQCQAALEGRHID 87 (523)
T ss_pred CCCCHHHCCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCC
T ss_conf 899654404949999999999985-9967158757899868899999999997599999989888788899986489998
Q ss_pred CCHHHHHCCCCCCC-CCCCCCCCCCCC-------CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
Q ss_conf 00243311255553-221110012344-------6671475166420018899988887764200112355321234315
Q gi|254780916|r 206 KIEKFLFGDVDLQT-KNSAQFLGKFIE-------ANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRL 277 (482)
Q Consensus 206 ~~e~~lFG~~~~~~-~~~~~~~g~~~~-------a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 277 (482)
.+| .++.. ....+-..+.+. +..-..++||++.|+.+.+..||..|++. +.++.+
T Consensus 88 ViE------iDaasn~gID~IReLie~~~~~P~~gryKV~IIDEah~Lt~~A~NALLKTLEEP-----------P~~vvF 150 (523)
T PRK08451 88 IIE------MDAASNRGIDDIRNLIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP-----------PSYVKF 150 (523)
T ss_pred EEE------ECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCC-----------CCCCEE
T ss_conf 551------055333689999999997235886797279998260304899999999970389-----------878379
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 65214332111111233379998865433446778774422225566777641011223333211111000122338986
Q gi|254780916|r 278 IFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDN 357 (482)
Q Consensus 278 Ia~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGN 357 (482)
|.+|+.. ..+... ..-|-. .+.+.++ ....++.| |...+.+.+ ..++++|+.++.... -|-
T Consensus 151 ILaTTep-~KLp~T------IlSRCQ--~f~Fk~I-----~~~~I~~~-L~~I~~~E~---i~~e~~AL~~IA~~a-~Gs 211 (523)
T PRK08451 151 ILATTDP-LKLPAT------ILSRTQ--HFRFKQI-----PQNSIISH-LKTILNKEG---VSYEPEALEILARSG-SGS 211 (523)
T ss_pred EEECCCH-HHCHHH------HHHHHH--CCCCCCC-----CHHHHHHH-HHHHHHHCC---CCCCHHHHHHHHHHC-CCC
T ss_conf 9975994-768488------874203--1103379-----99999999-999999839---987999999999977-894
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
Q ss_conf 8999999999987438981068895454212
Q gi|254780916|r 358 VQELKNILLRAVIGLKDSHLTEDRFVLLLSR 388 (482)
Q Consensus 358 vREL~n~i~r~~i~~~~~~i~~~~~~~~l~~ 388 (482)
+|.=-+++.+++..+. +.|+.+++...++.
T Consensus 212 lRDalslLdQ~i~~~~-~~i~~~~v~~~lG~ 241 (523)
T PRK08451 212 LRDTLTLLDQAIIFCK-NAITESKVADMLGL 241 (523)
T ss_pred HHHHHHHHHHHHHHCC-CCCCHHHHHHHHCC
T ss_conf 8689879999998479-98779999998588
No 170
>KOG0733 consensus
Probab=98.31 E-value=1.1e-06 Score=66.98 Aligned_cols=195 Identities=16% Similarity=0.216 Sum_probs=111.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC----------CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11111112222222222222222344----------32048873277743679999998426754332101234655421
Q gi|254780916|r 136 HCALDSLIAVSPAMIQVVDLARKAGD----------CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQD 205 (482)
Q Consensus 136 ~~~~~~LiG~S~~m~~v~~~i~~~a~----------~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~ 205 (482)
+..+..+-|-+.....+.+.+..+-. -..-||+.|++||||+.+|++|-... .-||+.|+...+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~vPf~~isApei--- 259 (802)
T KOG0733 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GVPFLSISAPEI--- 259 (802)
T ss_pred CCCHHHCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCEEEECCHHH---
T ss_conf 86365416738999999999988528116866287799751644899864789999975212---885485141465---
Q ss_pred CCHHHHHCCCCCCCCCCCCCC-CCCCCCCCC---EEEECCCCHHHHH-------HHH----HHHHHHHHHHCCCCCCCCC
Q ss_conf 002433112555532211100-123446671---4751664200188-------999----8888776420011235532
Q gi|254780916|r 206 KIEKFLFGDVDLQTKNSAQFL-GKFIEANGG---TIVLEEPDALPLA-------VQG----RIYNFIETGKIEFFDSRGA 270 (482)
Q Consensus 206 ~~e~~lFG~~~~~~~~~~~~~-g~~~~a~~G---tl~l~ei~~L~~~-------~Q~----~Ll~~l~~~~~~~~g~~~~ 270 (482)
+ .|..|....++ -+|++|.+- .+|+|||+...+. +-. .||.-+++-.....
T Consensus 260 -v--------SGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~----- 325 (802)
T KOG0733 260 -V--------SGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKT----- 325 (802)
T ss_pred -H--------CCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----
T ss_conf -3--------15575228999999998736697599851100136440457889999999999985100256666-----
Q ss_pred CCCCCEEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 12343156521433--2-11111123337999886543344677877442222556677764101122333321111100
Q gi|254780916|r 271 IRLDVRLIFLTEKN--L-LPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALS 347 (482)
Q Consensus 271 ~~~~~RiIa~t~~~--L-~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~ 347 (482)
..-.|-+|++||++ | ..+-..|+|..+ +.|.+|.=-.|. +| |...|+...... .|+-+-++
T Consensus 326 ~g~~VlVIgATnRPDslDpaLRRaGRFdrE-------I~l~vP~e~aR~-~I-------L~~~~~~lrl~g-~~d~~qlA 389 (802)
T KOG0733 326 KGDPVLVIGATNRPDSLDPALRRAGRFDRE-------ICLGVPSETARE-EI-------LRIICRGLRLSG-DFDFKQLA 389 (802)
T ss_pred CCCCEEEEECCCCCCCCCHHHHCCCCCCCE-------EEECCCCHHHHH-HH-------HHHHHHHCCCCC-CCCHHHHH
T ss_conf 899769982478976558777325655323-------530689668899-99-------999986277787-76899997
Q ss_pred CCCCCCCCCCHH-HHHHHHHHHHH
Q ss_conf 012233898689-99999999987
Q gi|254780916|r 348 LLTKYPWIDNVQ-ELKNILLRAVI 370 (482)
Q Consensus 348 ~L~~y~WPGNvR-EL~n~i~r~~i 370 (482)
.| -||=|. .|+.++..|..
T Consensus 390 ~l----TPGfVGADL~AL~~~Aa~ 409 (802)
T KOG0733 390 KL----TPGFVGADLMALCREAAF 409 (802)
T ss_pred HC----CCCCCCHHHHHHHHHHHH
T ss_conf 51----887521419999999999
No 171
>KOG2028 consensus
Probab=98.30 E-value=4.4e-07 Score=69.67 Aligned_cols=219 Identities=20% Similarity=0.237 Sum_probs=116.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCE-EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 222222111111112222222222222222344-320-488732777436799999984267543321012346554210
Q gi|254780916|r 129 VPSQENEHCALDSLIAVSPAMIQVVDLARKAGD-CAI-PIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDK 206 (482)
Q Consensus 129 ~~~~~~~~~~~~~LiG~S~~m~~v~~~i~~~a~-~~~-~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~ 206 (482)
..++......+++.+|++...-. .-.++.+.. ... ++.+.|++||||+.+||.|-..|....-.||.+....-..
T Consensus 127 PLaermRPktL~dyvGQ~hlv~q-~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t-- 203 (554)
T KOG2028 127 PLAERMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKT-- 203 (554)
T ss_pred CHHHHCCCCHHHHHCCHHHHCCC-CHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCH--
T ss_conf 74554184368775053441483-268999987088870588669987658899999860577742799974145661--
Q ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCC--------CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
Q ss_conf 02433112555532211100123446--------6714751664200188999888877642001123553212343156
Q gi|254780916|r 207 IEKFLFGDVDLQTKNSAQFLGKFIEA--------NGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLI 278 (482)
Q Consensus 207 ~e~~lFG~~~~~~~~~~~~~g~~~~a--------~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI 278 (482)
.+..+.||+| ..-.||+|||+..-..-|.-+|-.+++|.+ -+|
T Consensus 204 ----------------~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I-------------~lI 254 (554)
T KOG2028 204 ----------------NDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDI-------------TLI 254 (554)
T ss_pred ----------------HHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHCCCCEECCCCE-------------EEE
T ss_conf ----------------889999999887876524406987377655323211003421306706-------------998
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCC--CCCC--CCCCCCCCCCCCCC
Q ss_conf 5214332111111233379998865433446778774422225566777641--0112--2333--32111110001223
Q gi|254780916|r 279 FLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSF--CTKN--AIKQ--ISISDKALSLLTKY 352 (482)
Q Consensus 279 a~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~--~~~~--~~~~--~~ls~~a~~~L~~y 352 (482)
.+|+.|+.=.+.. -|.-|--+++++ +|. .+.+..+..+=+... +++. +.+. ..++..+++.| .|
T Consensus 255 GATTENPSFqln~-----aLlSRC~VfvLe--kL~--~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyl-a~ 324 (554)
T KOG2028 255 GATTENPSFQLNA-----ALLSRCRVFVLE--KLP--VNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYL-AY 324 (554)
T ss_pred ECCCCCCCCCHHH-----HHHHCCCEEEEC--CCC--HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH-HH
T ss_conf 5366897601127-----787316066733--688--8999999999987632102568899983124568899999-87
Q ss_pred CCCCCHHHHHHHHHHH--HHHCCCC-----CCCHHHHHHHHCCC
Q ss_conf 3898689999999999--8743898-----10688954542124
Q gi|254780916|r 353 PWIDNVQELKNILLRA--VIGLKDS-----HLTEDRFVLLLSRE 389 (482)
Q Consensus 353 ~WPGNvREL~n~i~r~--~i~~~~~-----~i~~~~~~~~l~~~ 389 (482)
---|.-|-=-|.++-. ......+ .++.+|+...+...
T Consensus 325 lsdGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028 325 LSDGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHC
T ss_conf 04731888877899999988752477656400288899998531
No 172
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.29 E-value=1.2e-06 Score=66.66 Aligned_cols=206 Identities=16% Similarity=0.172 Sum_probs=105.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCC-------CCCCCCCCCCCCCCCC
Q ss_conf 111111112222222222222222344320488732777436799999984267543-------3210123465542100
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAF-------FPFFIVNCGMIDQDKI 207 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~-------~~fi~v~c~~~~~~~~ 207 (482)
.....++++|+...++++.+-++| .+..+.++.||+|+||+.+++.+-..=-..+ ..++.+|.+++
T Consensus 174 ~~GklDpvIGRd~EI~r~i~IL~R--R~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~~L----- 246 (823)
T CHL00095 174 YEGNLDPVIGRDKEIERVIQILGR--RTKNNPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIGLL----- 246 (823)
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHH--HCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHH-----
T ss_conf 838999875956999999999977--3248850237999879999999999760889986875993688428877-----
Q ss_pred HHHHHCCCCCCCCCCCCCC-C---CCCCCCCCEEEECCCCHH--------HHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 2433112555532211100-1---234466714751664200--------188999888877642001123553212343
Q gi|254780916|r 208 EKFLFGDVDLQTKNSAQFL-G---KFIEANGGTIVLEEPDAL--------PLAVQGRIYNFIETGKIEFFDSRGAIRLDV 275 (482)
Q Consensus 208 e~~lFG~~~~~~~~~~~~~-g---~~~~a~~Gtl~l~ei~~L--------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 275 (482)
+=|-+ +-|....|. + -+.++.+-.||+||||.+ +.+.-.-|--+|..| ++
T Consensus 247 ---~AGtk--yRGeFEeRlk~il~ei~~~~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLarG-------------el 308 (823)
T CHL00095 247 ---LAGTK--YRGEFEERIKKIMDEIKKANNIILVIDEIHTLIGAGAAEGAIDAANILKPALARG-------------KL 308 (823)
T ss_pred ---HHCCC--CCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHCC-------------CC
T ss_conf ---53342--2267999999999999857986999735165328897666431788765786489-------------86
Q ss_pred EEEEECCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHCCCCCCCCC
Q ss_conf 1565214332-111111233379998865433446778774422225566777---------------641011223333
Q gi|254780916|r 276 RLIFLTEKNL-LPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFL---------------QSFCTKNAIKQI 339 (482)
Q Consensus 276 RiIa~t~~~L-~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl---------------~~~~~~~~~~~~ 339 (482)
|+|.+|+.+= .+-++. ...|=-|...+.|.=|+.-+-..=+.-+...|= -+++.+|=. -+
T Consensus 309 ~~IGATT~~EYrk~iEk---D~AL~RRFq~V~V~EPs~e~t~~IL~gl~~~yE~~H~V~i~d~Ai~aav~LS~RYi~-dr 384 (823)
T CHL00095 309 QCIGATTLEEYRKHIEK---DPALERRFQPVYVGEPSVEETIEILLGLRDRYEKHHNLSISDKALEAAAKLSDQYIK-DR 384 (823)
T ss_pred EEEEECCHHHHHHHHHC---CHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CC
T ss_conf 69970788999998530---588996268410289987999999999999998750885047899999998776403-77
Q ss_pred CCCCCCCCC---------CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 211111000---------122338986899999999998
Q gi|254780916|r 340 SISDKALSL---------LTKYPWIDNVQELKNILLRAV 369 (482)
Q Consensus 340 ~ls~~a~~~---------L~~y~WPGNvREL~n~i~r~~ 369 (482)
.+++.|+.+ +..+..|..+.+++.-+..+.
T Consensus 385 ~LPDKAIDllDeA~A~~~~~~~~~~~~~~~~~~~~~~~~ 423 (823)
T CHL00095 385 FLPDKAIDLLDEAGSRVRLINKQLPPAARELDKELRHIL 423 (823)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 782178888999989999873258678999999999999
No 173
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=2.8e-05 Score=56.97 Aligned_cols=222 Identities=14% Similarity=0.170 Sum_probs=123.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC----CCCCCC-CCCCCCCCCCCCH
Q ss_conf 21111111122222222222222223443204887327774367999999842675----433210-1234655421002
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKR----AFFPFF-IVNCGMIDQDKIE 208 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r----~~~~fi-~v~c~~~~~~~~e 208 (482)
-....|..+||+.-..+.+...+.. .....--|++|..||||+.+||.+-..-.- ...|-- --+|..+....+-
T Consensus 10 ~RP~~f~e~vGQ~~v~~~L~nal~~-~rl~haylf~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C~~C~~i~~g~~~ 88 (717)
T PRK08853 10 WRPTQFKEVVGQSHVLTALENALAH-NRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQCATCKEIDEGRFV 88 (717)
T ss_pred HCCCCHHHHCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCC
T ss_conf 1798565513859999999999970-997405761088988898999999998678999999978887026767447877
Q ss_pred HHHHCCCCCC-CCCCCCCCCCCCCC-------CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
Q ss_conf 4331125555-32211100123446-------671475166420018899988887764200112355321234315652
Q gi|254780916|r 209 KFLFGDVDLQ-TKNSAQFLGKFIEA-------NGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFL 280 (482)
Q Consensus 209 ~~lFG~~~~~-~~~~~~~~g~~~~a-------~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~ 280 (482)
..+ +.++. .....+-.-+++.+ .--..+|||+|-|+......||..|++. +-+|.+|.+
T Consensus 89 d~~--EiDaAs~~~vdd~rel~~~~~y~p~~~~yKvyiiDEvHmls~~afnAlLKtlEEP-----------P~hv~Fila 155 (717)
T PRK08853 89 DLL--EIDAASRTKVEDTRELLDNVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-----------PEYVKFLLA 155 (717)
T ss_pred CEE--EECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCC-----------CCCEEEEEE
T ss_conf 524--5405656788999999985554887785479998305443899999998760378-----------756489984
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 14332111111233379998865433446778774422225566777641011223333211111000122338986899
Q gi|254780916|r 281 TEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQE 360 (482)
Q Consensus 281 t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvRE 360 (482)
|+.. .++- .-.+.+=+-|.|..+. .++| +.| |.....+.+ ..++++|+.++.... -|-+|.
T Consensus 156 TT~~-~kip-~TilSRc~~f~l~~~~---------~~~i---~~~-l~~i~~~E~---i~~~~~al~~ia~~a-~Gs~Rd 216 (717)
T PRK08853 156 TTDP-QKLP-VTILSRCLQFHLKPIS---------VDQI---HQQ-LDFVLDKEQ---VSAEARALGLIAHAA-DGSMRD 216 (717)
T ss_pred CCCH-HHCC-HHHHHHHHHCCCCCCC---------HHHH---HHH-HHHHHHHCC---CCCCHHHHHHHHHHC-CCCHHH
T ss_conf 3873-4373-8898765442326899---------9999---999-999999759---876999999999976-883778
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf 99999999874389810688954542124
Q gi|254780916|r 361 LKNILLRAVIGLKDSHLTEDRFVLLLSRE 389 (482)
Q Consensus 361 L~n~i~r~~i~~~~~~i~~~~~~~~l~~~ 389 (482)
=-+++.+++... ++.++.+++..-++..
T Consensus 217 alsl~dqaia~~-~g~~~~~~v~~mlg~~ 244 (717)
T PRK08853 217 ALSLTDQAIALG-NGQVTTDIVSHMLGTL 244 (717)
T ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHCCC
T ss_conf 888999999965-8971699999985888
No 174
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.28 E-value=3.4e-06 Score=63.38 Aligned_cols=226 Identities=12% Similarity=0.105 Sum_probs=116.4
Q ss_pred CCCCCCCCCCCCCCCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCHHH--HHCCCCC
Q ss_conf 12222222222222222344-32048873277743679999998426754332101234655421-00243--3112555
Q gi|254780916|r 142 LIAVSPAMIQVVDLARKAGD-CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQD-KIEKF--LFGDVDL 217 (482)
Q Consensus 142 LiG~S~~m~~v~~~i~~~a~-~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~-~~e~~--lFG~~~~ 217 (482)
+.=.|+.-+++...+.-... ....++|+||.||||+++.|.+=..-....-.++.+....++.. ++..- -||..-.
T Consensus 21 ~~y~s~~h~~al~~L~~~l~~~~g~~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~l~~~~ll~~i~~~lg~~~~ 100 (269)
T TIGR03015 21 FFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETE 100 (269)
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 41478669999999999996489659997299898899999999845934548999769999999999999998598988
Q ss_pred CCC--CCCCCC-C-CCCCC---CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 532--211100-1-23446---6714751664200188999888877642001123553212343156521433211111
Q gi|254780916|r 218 QTK--NSAQFL-G-KFIEA---NGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVK 290 (482)
Q Consensus 218 ~~~--~~~~~~-g-~~~~a---~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~ 290 (482)
..+ ...+.. . +.+.. ..-.|++||-+.||.+.=..| |.|-+-+. ++.+ -+.+|-.-...|.+...
T Consensus 101 ~~~~~~~~~~l~~~L~~~~~~g~~~vliIDEAq~L~~~~Le~L-r~L~n~e~---~~~~----ll~iiL~GqpeL~~~L~ 172 (269)
T TIGR03015 101 GRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEEL-RMLSNFQT---DNAK----LLQIFLVGQPEFRETLQ 172 (269)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHH-HHHHCCCC---CCCC----CEEEEEECCHHHHHHHC
T ss_conf 9899999999999999999669946999724221999999999-99970135---8887----04899957867999872
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1233379998865433446778774422225566777641011223-333211111000122338986899999999998
Q gi|254780916|r 291 SHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAI-KQISISDKALSLLTKYPWIDNVQELKNILLRAV 369 (482)
Q Consensus 291 ~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~-~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~ 369 (482)
...++. |-.|++ ..++++||. ++|...-++|=++.. |. ...-|+++|++.+..+. -|+-|..-++|.+++
T Consensus 173 ~~~~~~-l~qRI~-~~~~L~pl~--~eet~~YI~~RL~~A----G~~~~~~Ft~~A~~~I~~~S-~G~PR~IN~Lc~~aL 243 (269)
T TIGR03015 173 SPQLQQ-LRQRII-ASCHLGPLD--REETREYIEHRLERA----GNRDAPVFSEGAFDAIHRFS-RGIPRLINILCDRLL 243 (269)
T ss_pred CCCHHH-HHHCEE-EEEEECCCC--HHHHHHHHHHHHHHC----CCCCCCCCCHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_conf 740254-555076-799847999--899999999999866----99999985999999999986-990089999999999
Q ss_pred H---HCCCCCCCHHHHHH
Q ss_conf 7---43898106889545
Q gi|254780916|r 370 I---GLKDSHLTEDRFVL 384 (482)
Q Consensus 370 i---~~~~~~i~~~~~~~ 384 (482)
+ ......|+.+.+..
T Consensus 244 l~a~~~~~~~I~~~~v~~ 261 (269)
T TIGR03015 244 LSAFLEEKREIGGEEVRE 261 (269)
T ss_pred HHHHHHCCCCCCHHHHHH
T ss_conf 999994888679999999
No 175
>KOG0478 consensus
Probab=98.27 E-value=3.4e-06 Score=63.38 Aligned_cols=116 Identities=13% Similarity=0.192 Sum_probs=76.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 43204887327774367999999842675433210123465542100243311255553221110012344667147516
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLE 240 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ 240 (482)
.++.+||+.|.+||||+.+=+++|..++|. .+..=-. ...+.-+..=-+++.|+-..-..|.+-.++||..+||
T Consensus 460 R~~INILL~GDPGtsKSqlLqyv~~l~pRg--~yTSGkG----sSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCID 533 (804)
T KOG0478 460 RGDINILLVGDPGTSKSQLLQYCHRLLPRG--VYTSGKG----SSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCID 533 (804)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCC--EEECCCC----CCHHCCEEEEEECCCCCEEEEECCCEEECCCCEEECH
T ss_conf 455228994699867899999999747754--0405876----3022003567765765546650484897289657711
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCEEEEECC
Q ss_conf 6420018899988887764200112--35532123431565214
Q gi|254780916|r 241 EPDALPLAVQGRIYNFIETGKIEFF--DSRGAIRLDVRLIFLTE 282 (482)
Q Consensus 241 ei~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~RiIa~t~ 282 (482)
|.+.|+-+.|.-|+.++|.+.+.-- |--......+-|+|+.|
T Consensus 534 EFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaAN 577 (804)
T KOG0478 534 EFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAAN 577 (804)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEEEEC
T ss_conf 23333277889999999876311743022342166530344535
No 176
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.27 E-value=1.3e-06 Score=66.38 Aligned_cols=200 Identities=13% Similarity=0.190 Sum_probs=105.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCC---C----CCCCCCCCCCCCCCCCCCC
Q ss_conf 11111111222222222222222234432048873277743679999998426---7----5433210123465542100
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESG---K----RAFFPFFIVNCGMIDQDKI 207 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s---~----r~~~~fi~v~c~~~~~~~~ 207 (482)
.....+++||....++++.+-++| .+.-+.++.||+|+||+.++..+-..= . -++...+.+|.+++-
T Consensus 173 ~~gkldpvIGRd~EI~r~i~IL~R--R~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~I~~LDlg~L~---- 246 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV---- 246 (857)
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHC--CCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHH----
T ss_conf 829999885829999999999702--57899758789998899999999999983899978816902473388786----
Q ss_pred HHHHHCCCCCCCCCCCCCC-CCCCC---C-CCCEEEECCCCHH--------HHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 2433112555532211100-12344---6-6714751664200--------18899988887764200112355321234
Q gi|254780916|r 208 EKFLFGDVDLQTKNSAQFL-GKFIE---A-NGGTIVLEEPDAL--------PLAVQGRIYNFIETGKIEFFDSRGAIRLD 274 (482)
Q Consensus 208 e~~lFG~~~~~~~~~~~~~-g~~~~---a-~~Gtl~l~ei~~L--------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 274 (482)
=|-+ +-|....|. ..+.+ . .+-.||+||||.+ +.+.-.-|--+|..| +
T Consensus 247 ----AGak--yRGeFEeRLk~il~ev~~~~~~iILFIDEiHtlvGaG~~~G~~DaaNlLKPaLaRG-------------e 307 (857)
T PRK10865 247 ----AGAK--YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-------------E 307 (857)
T ss_pred ----HCCC--CCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHHCC-------------C
T ss_conf ----1476--52117999999999998478986999734354336887777534788867887379-------------8
Q ss_pred CEEEEECCCCCCCCCCHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHCCC
Q ss_conf 3156521433211111123337------9998865433446778774422225566777---------------641011
Q gi|254780916|r 275 VRLIFLTEKNLLPQVKSHVFRK------DLYYRISVFLINISTLRSRSEDIPWLVHFFL---------------QSFCTK 333 (482)
Q Consensus 275 ~RiIa~t~~~L~~~~~~g~fr~------dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl---------------~~~~~~ 333 (482)
+|+|++|+.+ .||+ -|=-|...+.|.=|+--+-.+=+.-+...|= -+++.+
T Consensus 308 lr~IGATT~~--------EYrk~iEkD~AL~RRFq~V~V~EPs~e~ti~ILrgl~~~yE~hH~V~itdeAl~aAV~LS~R 379 (857)
T PRK10865 308 LHCVGATTLD--------EYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHR 379 (857)
T ss_pred CEEEEECCHH--------HHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHC
T ss_conf 5499945899--------99987134588998537100689987999999998888998737915879999999998624
Q ss_pred CCCCCCCCCCCCCCC---------CCCCCCCCCHHHHHHHHHHH
Q ss_conf 223333211111000---------12233898689999999999
Q gi|254780916|r 334 NAIKQISISDKALSL---------LTKYPWIDNVQELKNILLRA 368 (482)
Q Consensus 334 ~~~~~~~ls~~a~~~---------L~~y~WPGNvREL~n~i~r~ 368 (482)
|= +-+.+++.|+.+ +.....|..+.+|++-+..+
T Consensus 380 YI-~dR~LPDKAIDLLDeA~A~vr~~~~~~p~~l~~l~~~i~~l 422 (857)
T PRK10865 380 YI-ADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQL 422 (857)
T ss_pred CC-CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 56-66678148988999998888763246844689999999999
No 177
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=98.26 E-value=2.6e-06 Score=64.24 Aligned_cols=128 Identities=14% Similarity=0.258 Sum_probs=66.6
Q ss_pred CCCEEEECCCCHHH------------HHHHHHHHHHHHHHHCC-CCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 67147516642001------------88999888877642001-123553212343156521433211111123337999
Q gi|254780916|r 233 NGGTIVLEEPDALP------------LAVQGRIYNFIETGKIE-FFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLY 299 (482)
Q Consensus 233 ~~Gtl~l~ei~~L~------------~~~Q~~Ll~~l~~~~~~-~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy 299 (482)
+.|.+|||||+.+. ..+|.-||..++-..+. +.| .-.+-++-+||+---+ .+.-.-+-++|-
T Consensus 248 q~GIVFIDEIDKIa~~~~~~g~DVS~EGVQrdLLpivEGt~V~tK~G--~V~TdhILFIasGAFh---~sKPSDLIPEl~ 322 (442)
T PRK05201 248 QNGIVFIDEIDKIAKRGEGSGPDVSREGVQRDLLPLVEGSTVSTKYG--MVKTDHILFIASGAFH---VAKPSDLIPELQ 322 (442)
T ss_pred HCCCEEECHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC--CCCCCEEEEECCCCCC---CCCCCHHHHHHC
T ss_conf 61704511465653035788989773307888788753885556777--6025503455045001---478202249871
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC-------CHHHHHHH
Q ss_conf 886543344677877442222--------556677764101122333321111100012233898-------68999999
Q gi|254780916|r 300 YRISVFLINISTLRSRSEDIP--------WLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWID-------NVQELKNI 364 (482)
Q Consensus 300 ~rL~~~~i~iPpLReR~eDI~--------~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPG-------NvREL~n~ 364 (482)
-||-+ .+.+-||- .+|+- .|+..|-.-|..+ |.. ..|+++|+..+....+-- --|-|+.+
T Consensus 323 GRlPv-~v~L~~L~--~~dl~~ILtepknsL~kQy~~Lf~~e-gv~-L~Ft~~Al~~IA~~A~~~n~~~~~iGAR~L~tI 397 (442)
T PRK05201 323 GRFPI-RVELDALT--EEDFVRILTEPKASLIKQYQALLATE-GVT-LEFTDDAIRRIAEIAYQVNEKTENIGARRLHTV 397 (442)
T ss_pred CCCEE-EEECCCCC--HHHHHHHHCCCCHHHHHHHHHHHHHC-CCE-EEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 75505-88824499--99999996786157899999998624-967-998479999999999985144766773788999
Q ss_pred HHHHHH
Q ss_conf 999987
Q gi|254780916|r 365 LLRAVI 370 (482)
Q Consensus 365 i~r~~i 370 (482)
+++++.
T Consensus 398 ~E~vl~ 403 (442)
T PRK05201 398 MEKLLE 403 (442)
T ss_pred HHHHHH
T ss_conf 999989
No 178
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=1e-05 Score=60.02 Aligned_cols=221 Identities=18% Similarity=0.166 Sum_probs=125.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCC----CCC-CCCCCCCCCCCCCH
Q ss_conf 2111111112222222222222222344320488732777436799999984267543----321-01234655421002
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAF----FPF-FIVNCGMIDQDKIE 208 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~----~~f-i~v~c~~~~~~~~e 208 (482)
-....|+.++|+....+.+...+.. ......-|+.|+.||||+.+||.+-..=.-.+ .|- .--+|..+.....-
T Consensus 10 YRP~~F~dvvGQe~vv~~L~nai~~-~rl~HAyLFsGprG~GKTt~ArilAk~LnC~~~~~~~PCg~C~sC~~i~~g~~~ 88 (560)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIEK-NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTIMPCGECFSCKSIDNDSSL 88 (560)
T ss_pred HCCCCHHHHCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 2898654403949999999999974-997743663289987899999999999659999998888788788887459998
Q ss_pred HHHHCCCCCC--CCCCCCCCCCCCC-------CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE
Q ss_conf 4331125555--3221110012344-------667147516642001889998888776420011235532123431565
Q gi|254780916|r 209 KFLFGDVDLQ--TKNSAQFLGKFIE-------ANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIF 279 (482)
Q Consensus 209 ~~lFG~~~~~--~~~~~~~~g~~~~-------a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa 279 (482)
. ++ +.+++ ++-..-| .+.+. +..-..+|||++.|+...|..||+.|++. +.++++|.
T Consensus 89 D-vi-Eidaasn~~VddIR-~l~e~v~~~P~~~~yKV~IIDEahmLt~~A~NALLKtLEEP-----------P~~~~FIL 154 (560)
T PRK06647 89 D-VI-EIDGASNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEP-----------PPYIVFIF 154 (560)
T ss_pred C-EE-EECCCCCCCHHHHH-HHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCC-----------CCCEEEEE
T ss_conf 7-57-64364548889999-99998632876687069996465655999999999986348-----------87559999
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 21433211111123337999886543344677877442222556677764101122333321111100012233898689
Q gi|254780916|r 280 LTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQ 359 (482)
Q Consensus 280 ~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvR 359 (482)
+|+.. ..+.. -..-| +-.+...||.+ +|| +.| |+..+.+.+ ..++++|+.++.... -|-+|
T Consensus 155 aTte~-~KI~~------TI~SR--CQ~f~Fk~i~~--~~I---~~~-L~~I~~~E~---i~~e~~AL~lIa~~a-~Gs~R 215 (560)
T PRK06647 155 ATTEV-HKLPA------TIKSR--CQHFNFRLLSL--EKI---YEM-LKKVCLEDD---IKYEDEALKWIAYKS-GGSVR 215 (560)
T ss_pred ECCCH-HHCHH------HHHHH--HEEEECCCCCH--HHH---HHH-HHHHHHHCC---CCCCHHHHHHHHHHC-CCCHH
T ss_conf 77994-76848------99965--10410555999--999---999-999998679---887999999999977-89588
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf 999999999874389810688954542124
Q gi|254780916|r 360 ELKNILLRAVIGLKDSHLTEDRFVLLLSRE 389 (482)
Q Consensus 360 EL~n~i~r~~i~~~~~~i~~~~~~~~l~~~ 389 (482)
.=-+++.+++..+ ++.|+.+++...++-.
T Consensus 216 Dalslldq~i~~~-~~~i~~~~v~~~lG~~ 244 (560)
T PRK06647 216 DAYTLFDQIVSFS-NSDITLEQIRSKMGLT 244 (560)
T ss_pred HHHHHHHHHHHCC-CCCCCHHHHHHHHCCC
T ss_conf 8999999999607-9977899999986898
No 179
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=4.8e-06 Score=62.34 Aligned_cols=211 Identities=15% Similarity=0.235 Sum_probs=112.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC----CCCCCC-CCCCCCCC----CC
Q ss_conf 1111111122222222222222223443204887327774367999999842675----433210-12346554----21
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKR----AFFPFF-IVNCGMID----QD 205 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r----~~~~fi-~v~c~~~~----~~ 205 (482)
....|++++|+....+.+...+. -.....--|+.|+.||||+.+||.+-..=.- ...|-- --+|..+. .+
T Consensus 11 RP~~F~dvvGQ~~v~~~L~nai~-~~ri~HAyLF~GprGtGKts~Ari~AkaLnC~~~~~~~pC~~C~~C~~i~~g~~~D 89 (563)
T PRK06674 11 RPQKFEDVVGQEHVTKTLQNALL-QEKVSHAYLFSGPRGTGKTSIAKVFAKAVNCEHAPVAEPCNECPSCLGITNGSISD 89 (563)
T ss_pred CCCCHHHHCCHHHHHHHHHHHHH-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCC
T ss_conf 89976552480999999999998-49965034312899868999999999985799999988776687899985589987
Q ss_pred CCHHHHHCCCCCCCCCCCCCCC------CCC--CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
Q ss_conf 0024331125555322111001------234--46671475166420018899988887764200112355321234315
Q gi|254780916|r 206 KIEKFLFGDVDLQTKNSAQFLG------KFI--EANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRL 277 (482)
Q Consensus 206 ~~e~~lFG~~~~~~~~~~~~~g------~~~--~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 277 (482)
.+| .++......+.+- .+. .+..-..++||++.|+...+..||..|++. +.++.+
T Consensus 90 viE------iDaasn~gVd~IR~i~~~v~~~P~~~~yKV~IIDeah~Lt~~A~NALLKtLEEP-----------P~~viF 152 (563)
T PRK06674 90 VLE------IDAASNNGVDEIRDIRDKVKFAPSAVEYKVYIIDEVHMLSIGAFNALLKTLEEP-----------PGHVIF 152 (563)
T ss_pred EEE------ECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHHCC-----------CCCEEE
T ss_conf 798------525555787999999998264886787379998545637999999999986388-----------756499
Q ss_pred EEECCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 652143321111-----112333799988654334467787744222255667776410112233332111110001223
Q gi|254780916|r 278 IFLTEKNLLPQV-----KSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKY 352 (482)
Q Consensus 278 Ia~t~~~L~~~~-----~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y 352 (482)
|.+|+.. ..+. ...+|+ | -.|.. +| ++.+ |...+.+.|. .++++|+.++...
T Consensus 153 ILaTtep-~ki~~TI~SRCQrf~---F-----~ri~~-------~~---i~~r-L~~I~~~E~i---~~~~~aL~~Ia~~ 209 (563)
T PRK06674 153 ILATTEP-HKIPPTIISRCQRFD---F-----RRISV-------ND---IVER-LSTVVTNEGT---QVEDEALQIIARA 209 (563)
T ss_pred EEECCCH-HHCCHHHHHHHEEEE---C-----CCCCH-------HH---HHHH-HHHHHHHCCC---CCCHHHHHHHHHH
T ss_conf 9965994-758478873310312---7-----88999-------99---9999-9999998499---9878899999997
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
Q ss_conf 389868999999999987438981068895454212
Q gi|254780916|r 353 PWIDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSR 388 (482)
Q Consensus 353 ~WPGNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~ 388 (482)
. -|-+|.=-+++.+++..+ ++.|+.+++...++.
T Consensus 210 a-~GsmRDAlsiLdQ~~s~~-~~~i~~~~v~~~lG~ 243 (563)
T PRK06674 210 A-DGGMRDALSLLDQAISFS-DERVTTEDVLAVTGA 243 (563)
T ss_pred C-CCCHHHHHHHHHHHHHHC-CCCCCHHHHHHHHCC
T ss_conf 6-997889999999999715-997689999998689
No 180
>KOG0745 consensus
Probab=98.24 E-value=1.5e-06 Score=66.01 Aligned_cols=94 Identities=21% Similarity=0.297 Sum_probs=67.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-----CCHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 432048873277743679999998426754332101234655421-----002433112555532211100123446671
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQD-----KIEKFLFGDVDLQTKNSAQFLGKFIEANGG 235 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~-----~~e~~lFG~~~~~~~~~~~~~g~~~~a~~G 235 (482)
-..++||+.|++|+||+++|+.+-..- +-||+..||.+++.. -+|+-+-- - ...-.+-.|+|..|
T Consensus 224 LeKSNvLllGPtGsGKTllaqTLAr~l---dVPfaIcDcTtLTQAGYVGeDVEsvi~K---L----l~~A~~nVekAQqG 293 (564)
T KOG0745 224 LEKSNVLLLGPTGSGKTLLAQTLARVL---DVPFAICDCTTLTQAGYVGEDVESVIQK---L----LQEAEYNVEKAQQG 293 (564)
T ss_pred EECCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEECCCCHHHCCCCCCCHHHHHHH---H----HHHCCCCHHHHHCC
T ss_conf 403547997788876438999999970---8876873255220055345429999999---9----99725789988267
Q ss_pred EEEECCCCHHH--------------HHHHHHHHHHHHHHHCCCC
Q ss_conf 47516642001--------------8899988887764200112
Q gi|254780916|r 236 TIVLEEPDALP--------------LAVQGRIYNFIETGKIEFF 265 (482)
Q Consensus 236 tl~l~ei~~L~--------------~~~Q~~Ll~~l~~~~~~~~ 265 (482)
.+|||||+.+. .-+|..||.+|+- .+--|
T Consensus 294 IVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEG-tvVnV 336 (564)
T KOG0745 294 IVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEG-TVVNV 336 (564)
T ss_pred EEEEEHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCC-CEECC
T ss_conf 38876012441367654544456626699999998526-27702
No 181
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=3.9e-05 Score=55.91 Aligned_cols=222 Identities=14% Similarity=0.214 Sum_probs=118.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCC----CC-CCCCCCCCCCCCCH
Q ss_conf 21111111122222222222222223443204887327774367999999842675433----21-01234655421002
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFF----PF-FIVNCGMIDQDKIE 208 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~----~f-i~v~c~~~~~~~~e 208 (482)
.....|+.++|+.-..+.+...+.. ......-|++|..|+||+.+||.+-..-.-.++ |- .--+|..+....+-
T Consensus 10 ~Rp~~f~~~vGQ~~v~~~l~na~~~-~r~~haylf~G~rG~GKtt~ari~ak~lnc~~~~~~~pcg~c~~c~~i~~g~~~ 88 (643)
T PRK07994 10 WRPQTFADVVGQEHVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFV 88 (643)
T ss_pred HCCCCHHHHCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 2888666653879999999999982-986634874589988888999999999679999999978767768988658988
Q ss_pred HHHHCCCCCC-CCCCCCCCCCCCCC-------CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
Q ss_conf 4331125555-32211100123446-------671475166420018899988887764200112355321234315652
Q gi|254780916|r 209 KFLFGDVDLQ-TKNSAQFLGKFIEA-------NGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFL 280 (482)
Q Consensus 209 ~~lFG~~~~~-~~~~~~~~g~~~~a-------~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~ 280 (482)
. ++ +.++. .....+-..+++.+ .--..++||+|-|+...+.-||..|++. +.++.+|.+
T Consensus 89 d-~~-eidaas~~~vd~~rel~~~~~y~p~~~r~kvyiidEvhmls~~afnalLKtlEeP-----------p~hv~fila 155 (643)
T PRK07994 89 D-LI-EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-----------PAHVKFLLA 155 (643)
T ss_pred C-EE-EEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCC-----------CHHCEEEEE
T ss_conf 7-58-8636777888999999984466887785369997221015899999999862378-----------610089986
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 14332111111233379998865433446778774422225566777641011223333211111000122338986899
Q gi|254780916|r 281 TEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQE 360 (482)
Q Consensus 281 t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvRE 360 (482)
|+.. .++.. -.+.+=+=|-|. .| ....++.| |...+.+.+ ..++++|+.++.... -|-+|.
T Consensus 156 TT~~-~k~p~-TilSRC~~f~~~--~~----------~~~~i~~~-l~~i~~~e~---i~~~~~al~~ia~~a-~gs~rd 216 (643)
T PRK07994 156 TTDP-QKLPV-TILSRCLQFHLK--AL----------DVEQIRHQ-LEHILNEEH---IAHEPRALQLLARAA-DGSLRD 216 (643)
T ss_pred CCCH-HHCCH-HHHHHHHHEECC--CC----------CHHHHHHH-HHHHHHHCC---CCCCHHHHHHHHHHC-CCCHHH
T ss_conf 0774-54847-899777650016--69----------99999999-999999759---987889999999974-786566
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf 99999999874389810688954542124
Q gi|254780916|r 361 LKNILLRAVIGLKDSHLTEDRFVLLLSRE 389 (482)
Q Consensus 361 L~n~i~r~~i~~~~~~i~~~~~~~~l~~~ 389 (482)
=-++..+++.. .++.|+.+++...++..
T Consensus 217 alsl~dq~i~~-~~~~~~~~~v~~mlg~~ 244 (643)
T PRK07994 217 ALSLTDQAIAS-GDGQVSTQAVSAMLGTL 244 (643)
T ss_pred HHHHHHHHHHH-CCCCCCHHHHHHHHCCC
T ss_conf 88899999986-58974799999985899
No 182
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=98.24 E-value=2.6e-06 Score=64.27 Aligned_cols=165 Identities=18% Similarity=0.252 Sum_probs=102.1
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHH----HCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 432048873277743679999998----4267543321012346554210024331125555322111001234466714
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIH----ESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGT 236 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH----~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gt 236 (482)
....+.+..|-|||||++|||.|= +..=-..|.+|.+-=|. |-|+==|. +|.. ..-.+.+|-||.
T Consensus 40 ~~~LHMiFKGNPGTGKTTVAR~~gklf~emnvL~KGH~iE~ERAD---------LVGEYIGH-TAqk-TRe~~kkA~GGv 108 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARLLGKLFKEMNVLSKGHLIEVERAD---------LVGEYIGH-TAQK-TREVIKKALGGV 108 (261)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC---------CCCCCCCC-HHHH-HHHHHHHHCCCC
T ss_conf 844787742786684389999999998533756788678876222---------12232030-0489-999999863880
Q ss_pred EEECCCCHHH--------HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 7516642001--------88999888877642001123553212343156521433211111123337999886543344
Q gi|254780916|r 237 IVLEEPDALP--------LAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLIN 308 (482)
Q Consensus 237 l~l~ei~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~ 308 (482)
||+||==.|+ .+.=.-|++.+++++- ++=+|.| -+..+-=|.|+..
T Consensus 109 LFiDEAYSLaRGGEKDFGKEAIDtLVK~mEd~~~-----------~lvlILA------------GY~~EM~yFL~~N--- 162 (261)
T TIGR02881 109 LFIDEAYSLARGGEKDFGKEAIDTLVKAMEDQRN-----------ELVLILA------------GYSDEMDYFLSLN--- 162 (261)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC-----------CEEEEEE------------CCHHHHHHHHHCC---
T ss_conf 0557777761488887662088899998761569-----------8689970------------8768999986207---
Q ss_pred HHHHHHH-----------HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC----CC-----CCCHHHHHHHHHHH
Q ss_conf 6778774-----------4222255667776410112233332111110001223----38-----98689999999999
Q gi|254780916|r 309 ISTLRSR-----------SEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKY----PW-----IDNVQELKNILLRA 368 (482)
Q Consensus 309 iPpLReR-----------~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y----~W-----PGNvREL~n~i~r~ 368 (482)
|-|+-| .|.+..++..++++- -..||++|...|..| +| -||-|=.+|+||+|
T Consensus 163 -PGL~SRFPi~i~FPdY~~eeL~~Ia~~m~~~R-------eY~Lt~~A~~~lr~~l~~~~~~~~~~~sNaR~vRN~iE~A 234 (261)
T TIGR02881 163 -PGLRSRFPISIDFPDYTVEELMEIAERMVKER-------EYKLTEEAKWKLREHLAKVDQLSSREFSNARYVRNIIEKA 234 (261)
T ss_pred -CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHH-------HHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf -79777665054188998889999999998646-------4225788999999997412444210057620124288999
Q ss_pred HH
Q ss_conf 87
Q gi|254780916|r 369 VI 370 (482)
Q Consensus 369 ~i 370 (482)
+=
T Consensus 235 IR 236 (261)
T TIGR02881 235 IR 236 (261)
T ss_pred HH
T ss_conf 99
No 183
>KOG2004 consensus
Probab=98.23 E-value=1.2e-06 Score=66.51 Aligned_cols=176 Identities=22% Similarity=0.282 Sum_probs=115.2
Q ss_pred CCEEE-EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC------CCC
Q ss_conf 32048-87327774367999999842675433210123465542100243311255553221110012344------667
Q gi|254780916|r 162 CAIPI-MIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIE------ANG 234 (482)
Q Consensus 162 ~~~~v-li~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~------a~~ 234 (482)
+.-+| .+.|++|+||+.+||.|-..-.| .|..+..+++.+. +++=||+.-+-||-. |++.+ .+|
T Consensus 436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnR---kFfRfSvGG~tDv---AeIkGHRRTYVGAMP---GkiIq~LK~v~t~N 506 (906)
T KOG2004 436 VQGKILCFVGPPGVGKTSIAKSIARALNR---KFFRFSVGGMTDV---AEIKGHRRTYVGAMP---GKIIQCLKKVKTEN 506 (906)
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHCC---CEEEEECCCCCCH---HHHCCCCEEEECCCC---HHHHHHHHHHCCCC
T ss_conf 78837998689987732189999998487---4699853663427---764254211001488---48999998617788
Q ss_pred CEEEECCCCHHHHHHH----HHHHHHHH---HHHCCCCCCCCCCCCC---CEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 1475166420018899----98888776---4200112355321234---315652143321111112333799988654
Q gi|254780916|r 235 GTIVLEEPDALPLAVQ----GRIYNFIE---TGKIEFFDSRGAIRLD---VRLIFLTEKNLLPQVKSHVFRKDLYYRISV 304 (482)
Q Consensus 235 Gtl~l~ei~~L~~~~Q----~~Ll~~l~---~~~~~~~g~~~~~~~~---~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~ 304 (482)
--++||||+.+....| ..||.+|+ +..|. +-.-.+++| |-+||+.| -.+
T Consensus 507 PliLiDEvDKlG~g~qGDPasALLElLDPEQNanFl--DHYLdVp~DLSkVLFicTAN--~id----------------- 565 (906)
T KOG2004 507 PLILIDEVDKLGSGHQGDPASALLELLDPEQNANFL--DHYLDVPVDLSKVLFICTAN--VID----------------- 565 (906)
T ss_pred CEEEEEHHHHHCCCCCCCHHHHHHHHCCHHHCCCHH--HHCCCCCCCHHHEEEEEECC--CCC-----------------
T ss_conf 658853223417887798689998743965355345--42026642111068898536--445-----------------
Q ss_pred HHHHHHHHHHHHHHHH----------HHHH-HHHHHHCCCCCCCC--CCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHH
Q ss_conf 3344677877442222----------5566-77764101122333--321111100012233-8986899999999998
Q gi|254780916|r 305 FLINISTLRSRSEDIP----------WLVH-FFLQSFCTKNAIKQ--ISISDKALSLLTKYP-WIDNVQELKNILLRAV 369 (482)
Q Consensus 305 ~~i~iPpLReR~eDI~----------~L~~-~fl~~~~~~~~~~~--~~ls~~a~~~L~~y~-WPGNvREL~n~i~r~~ 369 (482)
+| =|||++|.|=|. .+++ |++.+....+|..+ ..++++|+..|..|. ----||.|+.-|+.++
T Consensus 566 -tI-P~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~ 642 (906)
T KOG2004 566 -TI-PPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKIC 642 (906)
T ss_pred -CC-CHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -69-856641223220367227989999998412578987499878658629999999999988876778999999999
No 184
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=98.23 E-value=9.4e-07 Score=67.37 Aligned_cols=217 Identities=15% Similarity=0.217 Sum_probs=151.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCC----CCCEEE---EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 111222222222222222234----432048---8732777436799999984267543321012346554210024331
Q gi|254780916|r 140 DSLIAVSPAMIQVVDLARKAG----DCAIPI---MIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLF 212 (482)
Q Consensus 140 ~~LiG~S~~m~~v~~~i~~~a----~~~~~v---li~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lF 212 (482)
..+.||..++..|-..|.+.- ..+.|| |..|+||+||+=+||.+=..= +=+|+.+|+|-+-+-.-=|.|-
T Consensus 497 ~kIfGQD~AI~~lv~aiK~SrAGl~~~nkP~GSFLF~GPTGVGKTElak~LA~~L---Gv~l~RFDMSEYmEKHTVsRLI 573 (774)
T TIGR02639 497 AKIFGQDEAIEQLVSAIKRSRAGLGEPNKPVGSFLFVGPTGVGKTELAKQLAEEL---GVHLLRFDMSEYMEKHTVSRLI 573 (774)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHH---CCHHCCCCCHHHHHHHHHHHHH
T ss_conf 1315158999999999999874247788816888864798962578899999970---8200104650446899998741
Q ss_pred CCCC--------CC-CCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE---EEEE
Q ss_conf 1255--------55-3221110012344667147516642001889998888776420011235532123431---5652
Q gi|254780916|r 213 GDVD--------LQ-TKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVR---LIFL 280 (482)
Q Consensus 213 G~~~--------~~-~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R---iIa~ 280 (482)
|..- |. |.|.... =+-.|.||||+..-++.=.=||++++..+ +-++..+++||| +|=+
T Consensus 574 GsPPGYVGfEqGGLLT~AvrK~-------P~cVLLLDEIEKAHpDI~NILLQVMD~At---LTDN~GrKaDFRNVILIMT 643 (774)
T TIGR02639 574 GSPPGYVGFEQGGLLTDAVRKH-------PHCVLLLDEIEKAHPDIYNILLQVMDYAT---LTDNNGRKADFRNVILIMT 643 (774)
T ss_pred CCCCCCCCCCCCCCCHHHHCCC-------CCEEEHHHHHHHHHHHHHHHHHHHHCCCE---EECCCCCEEEECCEEEEEC
T ss_conf 6888851316777212233128-------85354234666631336667876633543---4058885763113688840
Q ss_pred CCCCCCCCCCHH-HHHHHHHH-HH--HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCCCCCCCC--CCCCC
Q ss_conf 143321111112-33379998-86--5433446778774422-----------22556677764101122333--32111
Q gi|254780916|r 281 TEKNLLPQVKSH-VFRKDLYY-RI--SVFLINISTLRSRSED-----------IPWLVHFFLQSFCTKNAIKQ--ISISD 343 (482)
Q Consensus 281 t~~~L~~~~~~g-~fr~dLy~-rL--~~~~i~iPpLReR~eD-----------I~~L~~~fl~~~~~~~~~~~--~~ls~ 343 (482)
||.-..++-+.- -|-.+--- .- .+-.+.=|=-|.|-++ +..++..+|.++..++..+. ..|++
T Consensus 644 SNaGa~E~~~~~iGF~~~~~~~~~~~Aikk~F~PEFRNRLDaii~F~~L~~~~~~~i~~K~l~el~~~L~eK~v~l~l~~ 723 (774)
T TIGR02639 644 SNAGAREMSKNPIGFGGERVEDKSEKAIKKLFSPEFRNRLDAIIAFNDLSEEVAEKIVKKFLDELQKQLNEKNVELELTD 723 (774)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECH
T ss_conf 37001023677644255541233488897315874201334644169988999999999999999975530653787647
Q ss_pred CCCCCCCCCCCCCC--HHHHHHHHHHHH
Q ss_conf 11000122338986--899999999998
Q gi|254780916|r 344 KALSLLTKYPWIDN--VQELKNILLRAV 369 (482)
Q Consensus 344 ~a~~~L~~y~WPGN--vREL~n~i~r~~ 369 (482)
+|..+|..--+--+ .|+|..+|+.-+
T Consensus 724 ~a~~~LA~KGY~~efGARpl~R~I~~~i 751 (774)
T TIGR02639 724 DAIKYLAEKGYDEEFGARPLARVIQEEI 751 (774)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 8999998636781105544899988741
No 185
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=98.21 E-value=4.3e-07 Score=69.78 Aligned_cols=251 Identities=12% Similarity=0.088 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHCCCEE-----EE--ECC-----H-------HHHHHH-CCCCCEEEE-ECCC-CCC--CH----H-HHHH
Q ss_conf 9999999999889889-----99--893-----7-------999986-089989999-7854-698--88----9-9999
Q gi|254780916|r 22 QIKIIKDHVESYGYDV-----FI--VNV-----S-------DLSTIS-KIQVNVIFL-SLIN-CED--DK----E-NILK 72 (482)
Q Consensus 22 ~~~~l~~~L~~~G~~v-----~~--a~~-----~-------al~~l~-~~~~dlill-D~~m-P~~--dG----l-ell~ 72 (482)
-|+-++..|.-.||+. .. |-. + |...+. +++.|.=.| |+.+ .+| || + -++.
T Consensus 40 sreRVksAl~Ns~F~fP~~rI~iNLAPAdl~KeG~~FDLpIAI~ilaaseq~da~~L~~yl~lGEL~LdG~lR~i~gvlP 119 (505)
T TIGR00368 40 SRERVKSALKNSGFKFPAKRITINLAPADLPKEGGRFDLPIAIGILAASEQLDAKKLDEYLFLGELALDGKLRGIKGVLP 119 (505)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCCCHHHHHHH
T ss_conf 67899999861576688540166538888766788863389999999863330431440110011332475110456899
Q ss_pred HHH-HHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC----CCCCCC-------CCCCCCCCCCCCC
Q ss_conf 999-8578983999926899999998885057432222222222222222----222222-------2222222111111
Q gi|254780916|r 73 NIV-DKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSII----CALREG-------VVPSQENEHCALD 140 (482)
Q Consensus 73 ~i~-~~~p~ipvIiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~----~al~~~-------~~~~~~~~~~~~~ 140 (482)
-+. +....+..||+...+..|+ ++-+|..-|+.+ +..+.++-+. +.+... ...........+.
T Consensus 120 ~~~~A~k~~~~~~iVp~~N~~Ea---Slv~G~~~y~~~--~L~~vv~fl~ql~~~~L~~~t~~~~~~~~~~s~~~~~DL~ 194 (505)
T TIGR00368 120 AIALAQKSGRKFIIVPKENAEEA---SLVDGLNVYGAD--HLKEVVKFLEQLGSEKLPPRTNTKAKSIINVSLIIDLDLK 194 (505)
T ss_pred HHHHHHHCCCCEEEECCCCCCCE---EEECCCCEEHHH--HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHCCCC
T ss_conf 99999865876776216675520---266387402047--4899999997623101777545553103441320104432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC-CCCCCCCCCC-CCCCCCC-----CCH-HHHH
Q ss_conf 112222222222222222344320488732777436799999984267-5433210123-4655421-----002-4331
Q gi|254780916|r 141 SLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGK-RAFFPFFIVN-CGMIDQD-----KIE-KFLF 212 (482)
Q Consensus 141 ~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~-r~~~~fi~v~-c~~~~~~-----~~e-~~lF 212 (482)
+++|++. -++-++-+|.-..++|+.|++||||+++|+.+...=+ -.+.-.+.++ .-++... .+- ..=|
T Consensus 195 dv~GQ~~----akRAleIAaAGGHNlll~GPPGsGKTmla~r~~giLP~L~~~EalE~~~v~S~~~~l~~~~~~~rQRPF 270 (505)
T TIGR00368 195 DVKGQQH----AKRALEIAAAGGHNLLLLGPPGSGKTMLASRLQGILPPLTNEEALETARVLSLVGKLIDRKQWKRQRPF 270 (505)
T ss_pred CCCCHHH----CCHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCC
T ss_conf 2545101----102677753135643767824962689998751057864512666678888888757652301106867
Q ss_pred C--CCCC----C-CCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHH----HHHH--CCCCCCCCC-CCCCCEEE
Q ss_conf 1--2555----5-322111001234466714751664200188999888877----6420--011235532-12343156
Q gi|254780916|r 213 G--DVDL----Q-TKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFI----ETGK--IEFFDSRGA-IRLDVRLI 278 (482)
Q Consensus 213 G--~~~~----~-~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l----~~~~--~~~~g~~~~-~~~~~RiI 278 (482)
- |=.+ . -|...-++|-+-.|++|.|||||.-+ ...+.|.+| |+|+ +.|-.+.-. .+.+|.+|
T Consensus 271 R~PHHsAS~~~lvGGG~~P~PGEiSLAhnGvLFLDEl~E----F~r~vL~~LR~PlEdg~i~iSRa~~ki~kyPA~FqL~ 346 (505)
T TIGR00368 271 RSPHHSASKPALVGGGSIPKPGEISLAHNGVLFLDELPE----FKRKVLDALREPLEDGSISISRAKAKIFKYPARFQLV 346 (505)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEHHCCCCHHHHCCHH----HHHHHHHHHCCCCCCCCEEEEECCCHHHCCCHHHHHH
T ss_conf 786500256664058752228512020054104322204----4678998717874267068863220100087245567
Q ss_pred EECCCCC
Q ss_conf 5214332
Q gi|254780916|r 279 FLTEKNL 285 (482)
Q Consensus 279 a~t~~~L 285 (482)
+|+|-.+
T Consensus 347 aAmNpcP 353 (505)
T TIGR00368 347 AAMNPCP 353 (505)
T ss_pred HHHCCCC
T ss_conf 5617887
No 186
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=2.4e-05 Score=57.36 Aligned_cols=215 Identities=18% Similarity=0.212 Sum_probs=126.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC-----CCCCCCCC-----CCCCCCC
Q ss_conf 2111111112222222222222222344320488732777436799999984267-----54332101-----2346554
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGK-----RAFFPFFI-----VNCGMID 203 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~-----r~~~~fi~-----v~c~~~~ 203 (482)
-....|..++|+....+.+...+. ........|++|..||||+++||.+-..-. ..++|-.. -+|.++.
T Consensus 17 ~rp~~f~~~~gq~~~~~~l~~~~~-~~~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~c~~c~~i~ 95 (600)
T PRK09111 17 YRPQTFDDLIGQEAMVRTLRNAFE-TGRIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGVGEHCQAIM 95 (600)
T ss_pred CCCCCHHHHCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 179877663385999999999997-2984204764578987899999999999669887666899889899886589886
Q ss_pred CC----CCHHHHHCCCCCC-CCCCCCCCCCCCC-------CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 21----0024331125555-3221110012344-------6671475166420018899988887764200112355321
Q gi|254780916|r 204 QD----KIEKFLFGDVDLQ-TKNSAQFLGKFIE-------ANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAI 271 (482)
Q Consensus 204 ~~----~~e~~lFG~~~~~-~~~~~~~~g~~~~-------a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~ 271 (482)
.. .+| .+++ .....+-.-+++. +.--...+||+|-|+.+.-..||..|++.
T Consensus 96 ~~~~~d~~e------~daas~~~v~~~r~~~~~~~~~p~~~~~kv~iidevhmls~~afnallktleep----------- 158 (600)
T PRK09111 96 EGRHVDVIE------MDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEP----------- 158 (600)
T ss_pred CCCCCCEEE------EECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC-----------
T ss_conf 689987588------515545788899999986053887775469996001105799999999876259-----------
Q ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 23431565214332111111233379998865433446778774----42222556677764101122333321111100
Q gi|254780916|r 272 RLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSR----SEDIPWLVHFFLQSFCTKNAIKQISISDKALS 347 (482)
Q Consensus 272 ~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR----~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~ 347 (482)
+.+|.+|.+|+..=. +++.|=+=..| +=+...|+.| |...+.+.+ ..++++|+.
T Consensus 159 p~~~~fi~att~~~k------------------~p~ti~src~~f~~~~~~~~~~~~~-l~~i~~~e~---~~~~~~al~ 216 (600)
T PRK09111 159 PPHVKFIFATTEIRK------------------VPVTVLSRCQRFDLRRIEAEVLAAH-LARIAEKEG---VEVEPDALA 216 (600)
T ss_pred CCCEEEEEECCCHHH------------------CCHHHHHHHHEECCCCCCHHHHHHH-HHHHHHHCC---CCCCHHHHH
T ss_conf 865499996285343------------------7589985441201057999999999-999998607---686677999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
Q ss_conf 0122338986899999999998743898106889545421244
Q gi|254780916|r 348 LLTKYPWIDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREG 390 (482)
Q Consensus 348 ~L~~y~WPGNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~~ 390 (482)
++.... -|-+|.=-+++.+++.. .++.|+.+++...++-..
T Consensus 217 ~ia~~a-~GS~RDaLSlLDQai~~-~~~~i~~~~v~~mLGl~d 257 (600)
T PRK09111 217 LIARAA-EGSVRDGLSLLDQAIAH-GAGEVTAEQVRDMLGLAD 257 (600)
T ss_pred HHHHHC-CCCCCHHHHHHHHHHHC-CCCCCCHHHHHHHHCCCC
T ss_conf 999974-89842189999999972-798756999999868876
No 187
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=5.4e-05 Score=54.95 Aligned_cols=218 Identities=15% Similarity=0.180 Sum_probs=122.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCC----CCCC-CCCCCCCCCC---
Q ss_conf 2111111112222222222222222344320488732777436799999984267543----3210-1234655421---
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAF----FPFF-IVNCGMIDQD--- 205 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~----~~fi-~v~c~~~~~~--- 205 (482)
-....|..++|+.-..+.+...+.. .....--|+.|..|+||+.+||.+-..-.-.+ .|-= --+|-.+...
T Consensus 10 ~RP~~F~e~vGQ~~v~~~L~nal~~-~rl~haylf~G~rGvGKTt~Ari~Ak~lNC~~~~~~~pCg~C~~C~~i~~g~~~ 88 (704)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDE-GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYV 88 (704)
T ss_pred HCCCCHHHHCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 1887475641869999999999981-997523750278987888999999999679999999978777767878558998
Q ss_pred -CCHHHHHCCCCCC-CCCCCCCCCCCCCC-------CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
Q ss_conf -0024331125555-32211100123446-------67147516642001889998888776420011235532123431
Q gi|254780916|r 206 -KIEKFLFGDVDLQ-TKNSAQFLGKFIEA-------NGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVR 276 (482)
Q Consensus 206 -~~e~~lFG~~~~~-~~~~~~~~g~~~~a-------~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 276 (482)
++| .++. .....+-..+++.+ .--..+|||+|-|+.....-||..|++. +..+.
T Consensus 89 D~~E------iDaAs~~~vdd~R~l~~~~~y~P~~~~yKVyiiDEvhmLs~~afNAlLKtLEEP-----------P~~v~ 151 (704)
T PRK08691 89 DLLE------IDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP-----------PEHVK 151 (704)
T ss_pred CEEE------EECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCC-----------CCCEE
T ss_conf 7477------424544588999999985346886785359998315443899999999861479-----------75608
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 56521433211111123337999886543344677877442222556677764101122333321111100012233898
Q gi|254780916|r 277 LIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWID 356 (482)
Q Consensus 277 iIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPG 356 (482)
+|.+|+.. .++.. -.+.+=+-|.|.. =+...++.| |...+.+.+ ..++++|+.++.... -|
T Consensus 152 FilaTTdp-~Klp~-TIlSRC~~f~l~~------------~~~~~i~~~-L~~i~~~E~---i~~e~~al~~ia~~a-~G 212 (704)
T PRK08691 152 FILATTDP-HKVPV-TVLSRCLQFVLRN------------MTAQQVADH-LAHVLDSEK---IAYEPPALQLLGRAA-AG 212 (704)
T ss_pred EEEECCCH-HHCCH-HHHHHHHHHCCCC------------CCHHHHHHH-HHHHHHHCC---CCCCHHHHHHHHHHC-CC
T ss_conf 99854884-64758-9998887710268------------999999999-999999839---856899999999975-78
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf 689999999999874389810688954542124
Q gi|254780916|r 357 NVQELKNILLRAVIGLKDSHLTEDRFVLLLSRE 389 (482)
Q Consensus 357 NvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~ 389 (482)
-+|.=-+++.+++... ++.++.+++..-++..
T Consensus 213 s~RDalslldQaia~~-~g~~~~~~v~~mLG~~ 244 (704)
T PRK08691 213 SMRDALSLLDQAIALG-SGKVAENDVRQMIGAV 244 (704)
T ss_pred CHHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCC
T ss_conf 5777988999999964-8962699999985888
No 188
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.20 E-value=2.9e-06 Score=63.92 Aligned_cols=221 Identities=17% Similarity=0.172 Sum_probs=128.0
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC----CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCC--CCCCCCCCCCC
Q ss_conf 2222111111112-22222222222222234----43204887327774367999999842675433--21012346554
Q gi|254780916|r 131 SQENEHCALDSLI-AVSPAMIQVVDLARKAG----DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFF--PFFIVNCGMID 203 (482)
Q Consensus 131 ~~~~~~~~~~~Li-G~S~~m~~v~~~i~~~a----~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~--~fi~v~c~~~~ 203 (482)
...+....|+.++ |.|- +-.+..+..++ ...-|++|.|++|.||+++.++|-+....... .++.+....+.
T Consensus 78 ~~l~~~ytFdnFv~g~~N--~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~ 155 (408)
T COG0593 78 SGLNPKYTFDNFVVGPSN--RLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT 155 (408)
T ss_pred CCCCCCCCHHHEEECCCH--HHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHH
T ss_conf 568988855422047744--999999999875668868957998799997899999999999862998648850489989
Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC
Q ss_conf 210024331125555322111001234466714751664200188--999888877642001123553212343156521
Q gi|254780916|r 204 QDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLA--VQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLT 281 (482)
Q Consensus 204 ~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~--~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t 281 (482)
.+.+.+-.. +......-.. +=..|++|+|+.+... .|.-++..+..=. .. .-+||.++
T Consensus 156 ~~~v~a~~~-------~~~~~Fk~~y---~~dlllIDDiq~l~gk~~~qeefFh~FN~l~-----~~-----~kqIvlts 215 (408)
T COG0593 156 NDFVKALRD-------NEMEKFKEKY---SLDLLLIDDIQFLAGKERTQEEFFHTFNALL-----EN-----GKQIVLTS 215 (408)
T ss_pred HHHHHHHHH-------HHHHHHHHHH---CCCEEEECHHHHHCCCHHHHHHHHHHHHHHH-----HC-----CCEEEEEC
T ss_conf 999999885-------0488888764---2673555138675677157999999999888-----50-----88799970
Q ss_pred CCCCCCCCCHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 4332111111233379998865-43--34467787744222255667776410112233332111110001223389868
Q gi|254780916|r 282 EKNLLPQVKSHVFRKDLYYRIS-VF--LINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNV 358 (482)
Q Consensus 282 ~~~L~~~~~~g~fr~dLy~rL~-~~--~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNv 358 (482)
.+.+.++. .+.+||.-|+. +. .|+-|.+..|..= |.+.+...+ ..++++++..+. ..++.|+
T Consensus 216 dr~P~~l~---~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai--------L~kka~~~~---~~i~~ev~~~la-~~~~~nv 280 (408)
T COG0593 216 DRPPKELN---GLEDRLRSRLEWGLVVEIEPPDDETRLAI--------LRKKAEDRG---IEIPDEVLEFLA-KRLDRNV 280 (408)
T ss_pred CCCCHHHC---CCCHHHHHHHHCEEEEEECCCCHHHHHHH--------HHHHHHHCC---CCCCHHHHHHHH-HHHHCCH
T ss_conf 78832211---03588998986305775279888999999--------999998658---888879999999-9700309
Q ss_pred HHHHHHHHHHHHH--CCCCCCCHHHHHHHHCC
Q ss_conf 9999999999874--38981068895454212
Q gi|254780916|r 359 QELKNILLRAVIG--LKDSHLTEDRFVLLLSR 388 (482)
Q Consensus 359 REL~n~i~r~~i~--~~~~~i~~~~~~~~l~~ 388 (482)
|||+-.+.++... ..+..|+.+.+...+..
T Consensus 281 ReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~ 312 (408)
T COG0593 281 RELEGALNRLDAFALFTKRAITIDLVKEILKD 312 (408)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99999999999999853875769999999998
No 189
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D; InterPro: IPR011776 This entry represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (IPR011775 from INTERPRO), this subunit is not found in archaea.; GO: 0005524 ATP binding, 0016851 magnesium chelatase activity, 0015995 chlorophyll biosynthetic process.
Probab=98.20 E-value=1e-05 Score=60.10 Aligned_cols=216 Identities=18% Similarity=0.179 Sum_probs=134.1
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCCC--CCCCCCCC------------------------------------CCCCCCCC
Q ss_conf 88732777436799999984267543--32101234------------------------------------65542100
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIHESGKRAF--FPFFIVNC------------------------------------GMIDQDKI 207 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH~~s~r~~--~~fi~v~c------------------------------------~~~~~~~~ 207 (482)
|.|.|-.||||..++|++|+.=+... .+-+..|| ..+|-+.=
T Consensus 20 v~I~~r~Gtgk~al~ral~~~Lp~~~~~~g~~i~~~~PA~P~~W~~~~~ER~~~~~GlsD~~~~~~~~~~p~~~lP~~vt 99 (705)
T TIGR02031 20 VAIRARAGTGKTALARALAEILPPIEELEGSIISNADPAEPDEWEDDLDERIEEEAGLSDSEVKVVIVKAPFVELPLGVT 99 (705)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEECCCCCC
T ss_conf 55416777388999999998588874326620147888887323445654233204776662204650564102589873
Q ss_pred HHHHHCCCCC----CCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCCEEEEEC
Q ss_conf 2433112555----53221110012344667147516642001889998888776420--01123553212343156521
Q gi|254780916|r 208 EKFLFGDVDL----QTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGK--IEFFDSRGAIRLDVRLIFLT 281 (482)
Q Consensus 208 e~~lFG~~~~----~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~--~~~~g~~~~~~~~~RiIa~t 281 (482)
|..|.|-.+- ..|...-+.|+|.+|++|.||+|.++.|....-.+|+.+|.+|. ++|=|=..-.++++=+|++=
T Consensus 100 edrL~G~iDve~sl~~G~~V~~~GlL~~A~~gvlyvd~~~lld~~~~n~l~~AL~~G~~~vEREGiS~~~Pa~f~Liaty 179 (705)
T TIGR02031 100 EDRLLGGIDVEESLASGQRVLQPGLLDEANRGVLYVDSLNLLDDSLVNRLLDALDEGVVIVEREGISVVHPAKFVLIATY 179 (705)
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCHHHCCCCCEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEC
T ss_conf 20302640020146878254407603116897043154541106899999988654976888656563047673036631
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCC----------------CC
Q ss_conf 433211111123337999886543--344677877442222556677764---101122333----------------32
Q gi|254780916|r 282 EKNLLPQVKSHVFRKDLYYRISVF--LINISTLRSRSEDIPWLVHFFLQS---FCTKNAIKQ----------------IS 340 (482)
Q Consensus 282 ~~~L~~~~~~g~fr~dLy~rL~~~--~i~iPpLReR~eDI~~L~~~fl~~---~~~~~~~~~----------------~~ 340 (482)
+-. + -.+.+|+-|.+||.-+ ...+-++..|. .|.-+.+.|-+. +...++-+. ..
T Consensus 180 dp~--E--~~~~lr~~L~DRla~~v~~~~~~~~~~R~-~iv~~~~~F~~~~~~~~~~~~~e~~~~~~~ie~ARe~L~~V~ 254 (705)
T TIGR02031 180 DPA--E--GDGALREHLLDRLALIVSLEEVASLEARV-EIVRRAELFSELQEEVFEEVNDELLLLRGQIEAARELLPQVT 254 (705)
T ss_pred CCC--C--CCCCCCHHHHHHHHHEECCHHCCCHHHHH-HHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 777--7--87766204540344110511025788899-998899888750663201157624578999999998567873
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHH------HHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 11111000122338986899999------99999874389810688954542
Q gi|254780916|r 341 ISDKALSLLTKYPWIDNVQELKN------ILLRAVIGLKDSHLTEDRFVLLL 386 (482)
Q Consensus 341 ls~~a~~~L~~y~WPGNvREL~n------~i~r~~i~~~~~~i~~~~~~~~l 386 (482)
+|.+-++.|..-..-+=|.=++. +.+-...+.....++.+|+....
T Consensus 255 is~eq~~~lv~~a~~lGv~g~RAdLfa~raA~a~AAl~gR~~V~~eDL~~AV 306 (705)
T TIGR02031 255 ISAEQVKELVLTALSLGVEGHRADLFAVRAAKALAALEGRTEVEEEDLKLAV 306 (705)
T ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 6489999999999973887301789999999999998707245888999887
No 190
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.18 E-value=1.6e-06 Score=65.74 Aligned_cols=200 Identities=15% Similarity=0.188 Sum_probs=106.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC-------CCCCCCCCCCCCCCCCCC
Q ss_conf 1111111122222222222222223443204887327774367999999842675-------433210123465542100
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKR-------AFFPFFIVNCGMIDQDKI 207 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r-------~~~~fi~v~c~~~~~~~~ 207 (482)
.....++++|....++++.+-++| .+.-+.++.||+|+||+.++..+-..=-. ++...+.+|.+++-
T Consensus 168 ~~gklDpviGRd~Ei~r~i~IL~R--r~KNNpiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~LDlg~Lv---- 241 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSR--RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALI---- 241 (852)
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHH--HCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEHHHHH----
T ss_conf 828999773836999999999987--32489721279998799999999999866999978851851275288775----
Q ss_pred HHHHHCCCCCCCCCCCCCC-CCCCC---CC-CCEEEECCCCHH--------HHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 2433112555532211100-12344---66-714751664200--------18899988887764200112355321234
Q gi|254780916|r 208 EKFLFGDVDLQTKNSAQFL-GKFIE---AN-GGTIVLEEPDAL--------PLAVQGRIYNFIETGKIEFFDSRGAIRLD 274 (482)
Q Consensus 208 e~~lFG~~~~~~~~~~~~~-g~~~~---a~-~Gtl~l~ei~~L--------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 274 (482)
=|-+ +-|....|. ..+++ ++ +-.||+||||.| +.+.-.-|=-+|..| .
T Consensus 242 ----AGtk--yRGeFEeRlk~ii~ev~~~~~~iILFIDEiHtliGaG~~~G~~DAaNlLKPaLarG-------------e 302 (852)
T TIGR03346 242 ----AGAK--YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-------------E 302 (852)
T ss_pred ----CCCC--CCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHCC-------------C
T ss_conf ----2153--00789999999999998589987999612555326887666410677743787479-------------8
Q ss_pred CEEEEECCCCCCCCCCHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHCCC
Q ss_conf 3156521433211111123337------9998865433446778774422225566777---------------641011
Q gi|254780916|r 275 VRLIFLTEKNLLPQVKSHVFRK------DLYYRISVFLINISTLRSRSEDIPWLVHFFL---------------QSFCTK 333 (482)
Q Consensus 275 ~RiIa~t~~~L~~~~~~g~fr~------dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl---------------~~~~~~ 333 (482)
+|+|++|+.+ .||+ -|=-|...+.|.=|+.-+-..=+.-+...|= -+++.+
T Consensus 303 lr~IgATT~~--------EYrk~iEkD~AL~RRFq~I~V~EPs~e~t~~IL~gl~~~yE~hH~V~i~d~Ai~aav~LS~R 374 (852)
T TIGR03346 303 LHCIGATTLD--------EYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHR 374 (852)
T ss_pred CEEEEECCHH--------HHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHCC
T ss_conf 5599827899--------99988322688997377120479986899999997699997627926739999999997134
Q ss_pred CCCCCCCCCCCCCCCC---------CCCCCCCCHHHHHHHHHHH
Q ss_conf 2233332111110001---------2233898689999999999
Q gi|254780916|r 334 NAIKQISISDKALSLL---------TKYPWIDNVQELKNILLRA 368 (482)
Q Consensus 334 ~~~~~~~ls~~a~~~L---------~~y~WPGNvREL~n~i~r~ 368 (482)
|= +-+.+++.|+.+| ....+|-.+.+++.-+.++
T Consensus 375 Yi-~~R~LPDKAIDlLDeA~a~~~~~~~~~p~~l~~~~~~~~~l 417 (852)
T TIGR03346 375 YI-TDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQL 417 (852)
T ss_pred CC-CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 66-77889618999999999988762378946799999999999
No 191
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.13 E-value=1.2e-06 Score=66.53 Aligned_cols=166 Identities=21% Similarity=0.333 Sum_probs=95.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC------CCCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 2221111111122222222222------22222344-3204887327774367999999842675433210123465542
Q gi|254780916|r 132 QENEHCALDSLIAVSPAMIQVV------DLARKAGD-CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQ 204 (482)
Q Consensus 132 ~~~~~~~~~~LiG~S~~m~~v~------~~i~~~a~-~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~ 204 (482)
.......+++.||+-.+-++++ +.=.+... ...+||..|++||||++.|+++-+. .+-||+.|+..
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane---~kvp~l~vkat---- 185 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE---AKVPLLLVKAT---- 185 (368)
T ss_pred HHHCCCCHHHHHCHHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCC---CCCCEEEECHH----
T ss_conf 66136617664163988888799999964968763457541687789996487999987254---57854871168----
Q ss_pred CCCHHHHHC-CCCCCCCCCCCCC-CCCCC---CCCCEEEECCCCHHHHH--HHHH------HHHHHHHHHCCCCCCCCCC
Q ss_conf 100243311-2555532211100-12344---66714751664200188--9998------8887764200112355321
Q gi|254780916|r 205 DKIEKFLFG-DVDLQTKNSAQFL-GKFIE---ANGGTIVLEEPDALPLA--VQGR------IYNFIETGKIEFFDSRGAI 271 (482)
Q Consensus 205 ~~~e~~lFG-~~~~~~~~~~~~~-g~~~~---a~~Gtl~l~ei~~L~~~--~Q~~------Ll~~l~~~~~~~~g~~~~~ 271 (482)
+|.| |.+ ..++++ -+++. +.--.+||||++.+.++ .|.- ..++|-+. ...+..+.
T Consensus 186 -----~liGehVG----dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTe-lDgi~ene-- 253 (368)
T COG1223 186 -----ELIGEHVG----DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTE-LDGIKENE-- 253 (368)
T ss_pred -----HHHHHHHH----HHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-CCCCCCCC--
T ss_conf -----88887743----5989999999988751984998400245553045788645499999999985-01744577--
Q ss_pred CCCCEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2343156521433--2111111233379998865433446778774422225566777641
Q gi|254780916|r 272 RLDVRLIFLTEKN--LLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSF 330 (482)
Q Consensus 272 ~~~~RiIa~t~~~--L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~ 330 (482)
-+=.||+||+. |+..+ ..+|-++ +.+.+|.=+||.+ +.+++++.+
T Consensus 254 --GVvtIaaTN~p~~LD~ai-RsRFEeE-------IEF~LP~~eEr~~----ile~y~k~~ 300 (368)
T COG1223 254 --GVVTIAATNRPELLDPAI-RSRFEEE-------IEFKLPNDEERLE----ILEYYAKKF 300 (368)
T ss_pred --CEEEEEECCCHHHCCHHH-HHHHHHE-------EEEECCCHHHHHH----HHHHHHHHC
T ss_conf --569995059846507888-8655650-------6564888589999----999989858
No 192
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.3e-06 Score=66.34 Aligned_cols=193 Identities=16% Similarity=0.150 Sum_probs=100.2
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC---CCCEEE
Q ss_conf 32048873277743679999998426754332101234655421002433112555532211100123446---671475
Q gi|254780916|r 162 CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEA---NGGTIV 238 (482)
Q Consensus 162 ~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a---~~Gtl~ 238 (482)
...-||+.|++||||+++|+++-..+ +.+|+.++++.+.. ..+|+.. ..-.-.|..| ....+|
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~~l~s-----k~vGese------k~ir~~F~~A~~~~p~iif 340 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGSELLS-----KWVGESE------KNIRELFEKARKLAPSIIF 340 (494)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC---CCCEEEECCHHHHH-----HHHHHHH------HHHHHHHHHHHHCCCCEEE
T ss_conf 88369998899975899999987544---98248843355540-----7765999------9999999999966998897
Q ss_pred ECCCCHHHHHHHHH----HHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 16642001889998----88877642001123553212343156521433--2-11111123337999886543344677
Q gi|254780916|r 239 LEEPDALPLAVQGR----IYNFIETGKIEFFDSRGAIRLDVRLIFLTEKN--L-LPQVKSHVFRKDLYYRISVFLINIST 311 (482)
Q Consensus 239 l~ei~~L~~~~Q~~----Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~--L-~~~~~~g~fr~dLy~rL~~~~i~iPp 311 (482)
+|||+.+-..-... -.|++.+--+..- .-+...+|.+|++||.. + ..+...|+|++ .+.|..|.
T Consensus 341 iDEiDs~~~~r~~~~~~~~~rv~~~ll~~~d--~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~-------~i~v~~pd 411 (494)
T COG0464 341 IDEIDSLASGRGPSEDGSGRRVVGQLLTELD--GIEKAEGVLVIAATNRPDDLDPALLRPGRFDR-------LIYVPLPD 411 (494)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH--CCCCCCCEEEEECCCCCCCCCHHHHCCCCCEE-------EEEECCCC
T ss_conf 4886667412899876379999999999974--75443764899647983326875624366303-------78717989
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHC
Q ss_conf 87744222255667776410112233332111110001223389868999999999987438----98106889545421
Q gi|254780916|r 312 LRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLK----DSHLTEDRFVLLLS 387 (482)
Q Consensus 312 LReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~----~~~i~~~~~~~~l~ 387 (482)
..+|.+=+ .+++....... ...++-+.+...... | .-.++.++++.+....- ...++.+|+...+.
T Consensus 412 ~~~r~~i~----~~~~~~~~~~~---~~~~~~~~l~~~t~~-~--sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~ 481 (494)
T COG0464 412 LEERLEIF----KIHLRDKKPPL---AEDVDLEELAEITEG-Y--SGADIAALVREAALEALREARRREVTLDDFLDALK 481 (494)
T ss_pred HHHHHHHH----HHHHCCCCCCH---HHHHHHHHHHHHHCC-C--CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 89999999----99854156511---556419999987527-7--89999999999999899854577634999999986
No 193
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.11 E-value=4.1e-06 Score=62.81 Aligned_cols=204 Identities=16% Similarity=0.181 Sum_probs=108.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC-------CCCCCCCCCCCCCCCCCC
Q ss_conf 1111111122222222222222223443204887327774367999999842675-------433210123465542100
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKR-------AFFPFFIVNCGMIDQDKI 207 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r-------~~~~fi~v~c~~~~~~~~ 207 (482)
.....+++||....++++.+-++| .+..+.++.||+|+||+.++..+-..=-. ++...+.+|.+++
T Consensus 182 ~~gklDPvIGRd~EI~r~iqIL~R--r~KNNPiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDlg~L----- 254 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLR--RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL----- 254 (852)
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHH--HCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEEHHHH-----
T ss_conf 839999886949999999999986--2479974657999879999999999997699986774385678678888-----
Q ss_pred HHHHHCCCCCCCCCCCCCC-CCCCC---CCC-CEEEECCCCHHH--------HHHHHHHHH-HHHHHHCCCCCCCCCCCC
Q ss_conf 2433112555532211100-12344---667-147516642001--------889998888-776420011235532123
Q gi|254780916|r 208 EKFLFGDVDLQTKNSAQFL-GKFIE---ANG-GTIVLEEPDALP--------LAVQGRIYN-FIETGKIEFFDSRGAIRL 273 (482)
Q Consensus 208 e~~lFG~~~~~~~~~~~~~-g~~~~---a~~-Gtl~l~ei~~L~--------~~~Q~~Ll~-~l~~~~~~~~g~~~~~~~ 273 (482)
+=|-+ +-|....|. +.+.+ +.+ -.||+||||.+= .+. ..+|. +|..|
T Consensus 255 ---vAGtk--yRGeFEeRlk~ii~ei~~~~~~iILFIDEiHtlvGAG~~~G~~Da-aNiLKPaLarG------------- 315 (852)
T TIGR03345 255 ---QAGAS--VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDA-ANLLKPALARG------------- 315 (852)
T ss_pred ---HHCCC--CCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCCCCH-HHHHHHHHHCC-------------
T ss_conf ---64035--763599999999999984899769996348775289988886227-88751787378-------------
Q ss_pred CCEEEEECCCCCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHCCCCCC
Q ss_conf 43156521433211111123337--99988654334467787744222255667776---------------41011223
Q gi|254780916|r 274 DVRLIFLTEKNLLPQVKSHVFRK--DLYYRISVFLINISTLRSRSEDIPWLVHFFLQ---------------SFCTKNAI 336 (482)
Q Consensus 274 ~~RiIa~t~~~L~~~~~~g~fr~--dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~---------------~~~~~~~~ 336 (482)
++|+|.+|+.+=- ...|-+ -|=-|...+.|.=|+--+-.+=+.-|...|=. +.+.+|=
T Consensus 316 elr~IGATT~~EY----rk~iEkD~AL~RRFq~V~V~EPs~eeti~IL~glk~~yE~hH~V~i~d~Ai~aAv~LS~RYI- 390 (852)
T TIGR03345 316 ELRTIAATTWAEY----KKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI- 390 (852)
T ss_pred CCEEEEECCHHHH----HHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHC-
T ss_conf 7349983578999----88864268899624755279998799999999879998554796870899999999987215-
Q ss_pred CCCCCCCCCCCCC---------CCCCCCCCHHHHHHHHHHHH
Q ss_conf 3332111110001---------22338986899999999998
Q gi|254780916|r 337 KQISISDKALSLL---------TKYPWIDNVQELKNILLRAV 369 (482)
Q Consensus 337 ~~~~ls~~a~~~L---------~~y~WPGNvREL~n~i~r~~ 369 (482)
+-+.+++.|+.+| .....|-.+.+|++-+..+-
T Consensus 391 ~dR~LPDKAIDLlDeA~A~~~~~~~~~p~~l~~~~~~~~~~~ 432 (852)
T TIGR03345 391 PGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALE 432 (852)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 545584278999999999999860489568999999999999
No 194
>KOG0734 consensus
Probab=98.11 E-value=9.1e-06 Score=60.39 Aligned_cols=210 Identities=17% Similarity=0.258 Sum_probs=116.6
Q ss_pred CCCCCCCCCCCCCCCC---CCCCCCCC------CCC-CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 2111111112222222---22222222------234-4320488732777436799999984267543321012346554
Q gi|254780916|r 134 NEHCALDSLIAVSPAM---IQVVDLAR------KAG-DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMID 203 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m---~~v~~~i~------~~a-~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~ 203 (482)
..+..|++.-|...+= ++|.+.++ ++. ....-||++|++||||+++||+|-.. ++-||.....+.
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE---A~VPFF~~sGSE-- 372 (752)
T KOG0734 298 MKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE---AGVPFFYASGSE-- 372 (752)
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCC---CCCCEEECCCCC--
T ss_conf 416550021472789999999999860908764314758885387689997556999986055---689747416620--
Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCCCCCC---CCEEEECCCCHHH-----HHHH---HHHHHHHHH-HHCCCCCCCCCC
Q ss_conf 210024331125555322111001234466---7147516642001-----8899---988887764-200112355321
Q gi|254780916|r 204 QDKIEKFLFGDVDLQTKNSAQFLGKFIEAN---GGTIVLEEPDALP-----LAVQ---GRIYNFIET-GKIEFFDSRGAI 271 (482)
Q Consensus 204 ~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~---~Gtl~l~ei~~L~-----~~~Q---~~Ll~~l~~-~~~~~~g~~~~~ 271 (482)
+++.+-|. | ..+...+|.+|. --.+|+|||+... .+.+ .-|-++|-+ .-|.+ +.
T Consensus 373 ---FdEm~VGv-----G-ArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q---Ne-- 438 (752)
T KOG0734 373 ---FDEMFVGV-----G-ARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ---NE-- 438 (752)
T ss_pred ---HHHHHHCC-----C-HHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCC---CC--
T ss_conf ---44542201-----4-8999999999873498599972002205667862778999899999998428676---88--
Q ss_pred CCCCEEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 2343156521433--2-111111233379998865433446778774422225566777641011223333211111000
Q gi|254780916|r 272 RLDVRLIFLTEKN--L-LPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSL 348 (482)
Q Consensus 272 ~~~~RiIa~t~~~--L-~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~ 348 (482)
-+=||++||.+ | ..++.-|+|.. .+++..|-+|-|.| | ..+++.+.-... .++++.
T Consensus 439 --GiIvigATNfpe~LD~AL~RPGRFD~-------~v~Vp~PDv~GR~e-I---L~~yl~ki~~~~-----~VD~~i--- 497 (752)
T KOG0734 439 --GIIVIGATNFPEALDKALTRPGRFDR-------HVTVPLPDVRGRTE-I---LKLYLSKIPLDE-----DVDPKI--- 497 (752)
T ss_pred --CEEEEECCCCHHHHHHHHCCCCCCCE-------EEECCCCCCCCHHH-H---HHHHHHCCCCCC-----CCCHHH---
T ss_conf --66999516874555687348875533-------67468977332899-9---999983487656-----778767---
Q ss_pred CCCCCCCC-CHHHHHHHHHHHHHHC---CCCCCCHHHHHH
Q ss_conf 12233898-6899999999998743---898106889545
Q gi|254780916|r 349 LTKYPWID-NVQELKNILLRAVIGL---KDSHLTEDRFVL 384 (482)
Q Consensus 349 L~~y~WPG-NvREL~n~i~r~~i~~---~~~~i~~~~~~~ 384 (482)
....-|| +-.+|.|+|-+|.+-+ ....++..++.-
T Consensus 498 -iARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~ 536 (752)
T KOG0734 498 -IARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEF 536 (752)
T ss_pred -HCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf -226889876578998888999999863740110887765
No 195
>KOG0733 consensus
Probab=98.08 E-value=4.5e-06 Score=62.57 Aligned_cols=130 Identities=22% Similarity=0.279 Sum_probs=81.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC---CEEE
Q ss_conf 3204887327774367999999842675433210123465542100243311255553221110012344667---1475
Q gi|254780916|r 162 CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANG---GTIV 238 (482)
Q Consensus 162 ~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~---Gtl~ 238 (482)
...-||+.|++|+||+++|+++-+.+. ..||.|-. .+++ +.--|+. .-| ..-.|..|.. -.+|
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag---~NFisVKG----PELl-NkYVGES---ErA---VR~vFqRAR~saPCVIF 609 (802)
T KOG0733 544 APSGVLLCGPPGCGKTLLAKAVANEAG---ANFISVKG----PELL-NKYVGES---ERA---VRQVFQRARASAPCVIF 609 (802)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCC---CCEEEECC----HHHH-HHHHHHH---HHH---HHHHHHHHHCCCCEEEE
T ss_conf 987238757998618899999850304---75476238----8999-8774237---899---99999986238983898
Q ss_pred ECCCCHHHH-------HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC---CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 166420018-------89998888776420011235532123431565214332---11111123337999886543344
Q gi|254780916|r 239 LEEPDALPL-------AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNL---LPQVKSHVFRKDLYYRISVFLIN 308 (482)
Q Consensus 239 l~ei~~L~~-------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L---~~~~~~g~fr~dLy~rL~~~~i~ 308 (482)
+|||+.|-+ +.-.+++..|-+- +++-. ....|-||++||++- ..+..-|+|..=|| +.
T Consensus 610 FDEiDaL~p~R~~~~s~~s~RvvNqLLtE----lDGl~-~R~gV~viaATNRPDiIDpAiLRPGRlDk~Ly-------V~ 677 (802)
T KOG0733 610 FDEIDALVPRRSDEGSSVSSRVVNQLLTE----LDGLE-ERRGVYVIAATNRPDIIDPAILRPGRLDKLLY-------VG 677 (802)
T ss_pred ECCHHHCCCCCCCCCCHHHHHHHHHHHHH----HCCCC-CCCCEEEEEECCCCCCCCHHHCCCCCCCCEEE-------EC
T ss_conf 51112027655777750589999999987----31621-11425999506897655565518775574245-------06
Q ss_pred HHHHHHHHH
Q ss_conf 677877442
Q gi|254780916|r 309 ISTLRSRSE 317 (482)
Q Consensus 309 iPpLReR~e 317 (482)
+|+-.||.+
T Consensus 678 lPn~~eR~~ 686 (802)
T KOG0733 678 LPNAEERVA 686 (802)
T ss_pred CCCHHHHHH
T ss_conf 998788999
No 196
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=7.2e-06 Score=61.10 Aligned_cols=96 Identities=22% Similarity=0.267 Sum_probs=68.2
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC---------CCCC
Q ss_conf 3443204887327774367999999842675433210123465542100243311255553221110---------0123
Q gi|254780916|r 159 AGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQF---------LGKF 229 (482)
Q Consensus 159 ~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~---------~g~~ 229 (482)
+--+.++||+.|++|+||+++|+.+-.. -+-||..-||.++++. |+. |.+... ..-.
T Consensus 93 vEL~KSNILLiGPTGsGKTlLAqTLAk~---LnVPFaiADATtLTEA-------GYV----GEDVENillkLlqaadydV 158 (408)
T COG1219 93 VELSKSNILLIGPTGSGKTLLAQTLAKI---LNVPFAIADATTLTEA-------GYV----GEDVENILLKLLQAADYDV 158 (408)
T ss_pred EEEEECCEEEECCCCCCHHHHHHHHHHH---HCCCEEECCCCCHHHC-------CCC----CHHHHHHHHHHHHHCCCCH
T ss_conf 3532031799888997577999999998---4898475144412106-------635----5008999999998764588
Q ss_pred CCCCCCEEEECCCCHHHH--------------HHHHHHHHHHHHH--HCCCCCCC
Q ss_conf 446671475166420018--------------8999888877642--00112355
Q gi|254780916|r 230 IEANGGTIVLEEPDALPL--------------AVQGRIYNFIETG--KIEFFDSR 268 (482)
Q Consensus 230 ~~a~~Gtl~l~ei~~L~~--------------~~Q~~Ll~~l~~~--~~~~~g~~ 268 (482)
+.|..|.+|+|||+.++. -+|..||..++-. .+-|-|+.
T Consensus 159 ~rAerGIIyIDEIDKIarkSen~SITRDVSGEGVQQALLKiiEGTvasVPPqGGR 213 (408)
T COG1219 159 ERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGR 213 (408)
T ss_pred HHHHCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCC
T ss_conf 8882885998510254205789872343673589999999970751023999888
No 197
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=98.07 E-value=2.8e-05 Score=56.90 Aligned_cols=42 Identities=31% Similarity=0.378 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 999999999999999828727899978489988999999981
Q gi|254780916|r 434 RLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREY 475 (482)
Q Consensus 434 ~l~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~~ 475 (482)
+++.++.+.|.++|+.|+||++++|+.|||.|+||.||+.|-
T Consensus 138 S~~rl~WEhIqrvl~e~~~NiSeTARrL~MHRRTLqRkL~KR 179 (182)
T COG4567 138 SADRLRWEHIQRVLEECEGNISETARRLNMHRRTLQRKLAKR 179 (182)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 456766999999999937777899999621399999997414
No 198
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=0.00014 Score=52.04 Aligned_cols=222 Identities=14% Similarity=0.155 Sum_probs=120.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCC-----CCCCCCCCCCCCCH
Q ss_conf 2111111112222222222222222344320488732777436799999984267543321-----01234655421002
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPF-----FIVNCGMIDQDKIE 208 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~f-----i~v~c~~~~~~~~e 208 (482)
.....|..++|+.-..+.+...+.. .....--|++|..|+||+.+||.+-+.-.-..++- .--+|..+....+-
T Consensus 10 ~rp~~f~~~~gq~~~~~~l~~~~~~-~~~~~a~lf~g~rg~gkt~~ar~~a~~lnc~~~~~~~pc~~c~~c~~i~~~~~~ 88 (663)
T PRK08770 10 WRPKRFAELVGQEHVVRALSNALDS-GRVHHAFLFTGTRGVGKTTIARIFAKSLNCETGTSADPCGQCPACLDIDAGRYI 88 (663)
T ss_pred HCCCCHHHHCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 0887464522859999999999970-997404762279988888999999998678999999978778778988548988
Q ss_pred HHHHCCCCCC-CCCCCCCCCCCCC-------CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
Q ss_conf 4331125555-3221110012344-------6671475166420018899988887764200112355321234315652
Q gi|254780916|r 209 KFLFGDVDLQ-TKNSAQFLGKFIE-------ANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFL 280 (482)
Q Consensus 209 ~~lFG~~~~~-~~~~~~~~g~~~~-------a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~ 280 (482)
..+ +.++. .....+-.-+++. ..--..++||+|-|+...=.-||..|++- +-+|.+|.+
T Consensus 89 d~~--e~daas~~~v~~~r~~~~~~~~~p~~~~~kvy~idevhmls~~~fna~lktleep-----------p~~v~f~~a 155 (663)
T PRK08770 89 DLL--EIDAASNTGVDDVREVIENAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEP-----------PEHVKFLLA 155 (663)
T ss_pred CEE--EEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCC-----------CCCEEEEEE
T ss_conf 658--8646765888999999984435887774369997004332899999998740278-----------644289985
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 14332111111233379998865433446778774422225566777641011223333211111000122338986899
Q gi|254780916|r 281 TEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQE 360 (482)
Q Consensus 281 t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvRE 360 (482)
|+.. .++- --.+.+=|-|-|.- |.. ++ ++.| |.....+.+ ..++++|+..+.. .=-|-+|.
T Consensus 156 tt~~-~k~p-~t~~src~~f~~~~--~~~-------~~---~~~~-l~~~~~~e~---~~~~~~~~~~~~~-~~~gs~rd 216 (663)
T PRK08770 156 TTDP-QKLP-VTVLSRCLQFNLKR--LDE-------DQ---IQGQ-MTRILAAEQ---IESDPSAIVQLSK-AADGSLRD 216 (663)
T ss_pred CCCH-HHCC-HHHHHHHHHCCCCC--CCH-------HH---HHHH-HHHHHHHCC---CCCCHHHHHHHHH-HCCCCHHH
T ss_conf 4873-3374-89998887634377--999-------99---9999-999999839---9769999999999-74785677
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf 99999999874389810688954542124
Q gi|254780916|r 361 LKNILLRAVIGLKDSHLTEDRFVLLLSRE 389 (482)
Q Consensus 361 L~n~i~r~~i~~~~~~i~~~~~~~~l~~~ 389 (482)
=-++..+++..+ ++.|+.+++..-++..
T Consensus 217 ~lsl~~q~~~~~-~~~~~~~~v~~mlg~~ 244 (663)
T PRK08770 217 GLSLLDQAIAYA-GGALREDVVRTMLGTV 244 (663)
T ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHCCC
T ss_conf 888999999866-8976899999984888
No 199
>PRK09087 hypothetical protein; Validated
Probab=98.03 E-value=3.6e-05 Score=56.19 Aligned_cols=199 Identities=17% Similarity=0.186 Sum_probs=116.0
Q ss_pred CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCEE-EEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 11111111-22222222222222223443204-88732777436799999984267543321012346554210024331
Q gi|254780916|r 135 EHCALDSL-IAVSPAMIQVVDLARKAGDCAIP-IMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLF 212 (482)
Q Consensus 135 ~~~~~~~L-iG~S~~m~~v~~~i~~~a~~~~~-vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lF 212 (482)
....++.+ +|.+- +..++.+.+......| +.|.|+.|+||+++++...+.+. .. .+++..++.+..
T Consensus 16 ~~~~~dnF~vs~~N--~~a~~~l~~~~~w~~~~~~L~Gp~gsGKTHL~~~~~~~~~---a~--~~~~~~~~~~~~----- 83 (226)
T PRK09087 16 PGYGRDDLVVTESN--RAAVSLVDRWPNWPSPVVVLAGPVGSGKTHLASIWREKAD---AL--LVHPNEIGSDAA----- 83 (226)
T ss_pred CCCCCCCEEECCCH--HHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC---CE--EECHHHCCHHHH-----
T ss_conf 77873364775769--9999999847267777589989999988699999999809---96--836687474667-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHH
Q ss_conf 12555532211100123446671475166420018899988887764200112355321234315652143321111112
Q gi|254780916|r 213 GDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSH 292 (482)
Q Consensus 213 G~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g 292 (482)
....++.+++|+++..+.+ +..|+.++..= +....+++.+++.++.++--.
T Consensus 84 -----------------~~~~~~~~~idd~d~~~~d-Ee~LFhl~N~~----------~~~~~~LLlts~~~p~~l~~~- 134 (226)
T PRK09087 84 -----------------NAAAERPVLIEDIDAGGFD-ETGLFHLINSV----------RQAGTSLLMTSRLWPSAWNVK- 134 (226)
T ss_pred -----------------HHHCCCCEEEECCCCCCCC-HHHHHHHHHHH----------HHCCCEEEEECCCCHHHCCCC-
T ss_conf -----------------6532798899748777747-89999999999----------853987999889895666762-
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--
Q ss_conf 3337999886543-3446778774422225566777641011223333211111000122338986899999999998--
Q gi|254780916|r 293 VFRKDLYYRISVF-LINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAV-- 369 (482)
Q Consensus 293 ~fr~dLy~rL~~~-~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~-- 369 (482)
.+||=-||+.. .++++++- |- +....+.+.+..-| ..++++.+.+|..+ ++-++..|.+++.++=
T Consensus 135 --L~DL~SRL~~~~~~~I~~pd----D~--ll~~~L~k~~~~r~---l~l~~~v~~yll~r-~~Rs~~~l~~~l~~LD~~ 202 (226)
T PRK09087 135 --LPDLKSRLKAATVVEIGEPD----DA--LLSGVIFKLFADRQ---LYVEPHVVYYLVSR-MERSLFAAQTIVERLDRL 202 (226)
T ss_pred --CHHHHHHHHCCEEEEECCCC----HH--HHHHHHHHHHHHCC---CCCCHHHHHHHHHH-CCCCHHHHHHHHHHHHHH
T ss_conf --46899998578579835999----89--99999999987576---57888899999984-588999999999999999
Q ss_pred HHCCCCCCCHHHHHHHH
Q ss_conf 74389810688954542
Q gi|254780916|r 370 IGLKDSHLTEDRFVLLL 386 (482)
Q Consensus 370 i~~~~~~i~~~~~~~~l 386 (482)
.+..+..||..-+...+
T Consensus 203 SL~~kr~ITiplikevL 219 (226)
T PRK09087 203 ALERKSRITRALAAEVL 219 (226)
T ss_pred HHHCCCCCCHHHHHHHH
T ss_conf 99818999899999999
No 200
>PHA02244 ATPase-like protein
Probab=98.02 E-value=1.1e-05 Score=59.72 Aligned_cols=130 Identities=26% Similarity=0.305 Sum_probs=88.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCC
Q ss_conf 22222222222222223443204887327774367999999842675433210123465542100243311255553221
Q gi|254780916|r 143 IAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNS 222 (482)
Q Consensus 143 iG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~ 222 (482)
+...|...--...+.++.+.+.||.+.|..|+||+.+|+-|-..- +-||--.+. + .-|-+|-|..++ .|..
T Consensus 99 iasnpt~hy~~~~i~~~v~~nipV~L~G~AGsGKt~~A~qIA~aL---dl~FYf~gA--I---~~ef~L~Gf~DA-nG~y 169 (383)
T PHA02244 99 IASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEAL---DLDFYFMNA--I---MDEFELKGFIDA-NGKF 169 (383)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH---CCCCEECHH--H---HHHHHCCCEECC-CCCE
T ss_conf 147863234587899987359856997588886348999999985---888244132--3---013430125648-9967
Q ss_pred CC--CCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 11--00123446671475166420018899988887764200112355321234315652143
Q gi|254780916|r 223 AQ--FLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEK 283 (482)
Q Consensus 223 ~~--~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~ 283 (482)
.. ..-.|+ +||.++||||+.--+..=..|-.+|.++.+....+.-..+-|||+|++.|-
T Consensus 170 h~T~f~kaFk--~GGLfLlDEiDASnP~aL~~lNaALAN~fm~FPdG~V~~HedFr~IAagNT 230 (383)
T PHA02244 170 HETPFYEAFK--KGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred ECCHHHHHHH--CCCEEEEEHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEEEEECCC
T ss_conf 2638999986--188799732004487999999899864763476421100576389972465
No 201
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=5.9e-05 Score=54.67 Aligned_cols=209 Identities=15% Similarity=0.168 Sum_probs=117.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHC----CCCCCCCCC-CCCCCCCCC----C
Q ss_conf 1111111122222222222222223443204887327774367999999842----675433210-123465542----1
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES----GKRAFFPFF-IVNCGMIDQ----D 205 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~----s~r~~~~fi-~v~c~~~~~----~ 205 (482)
....|+.++|+....+.+...+.+= .....-|+.|+.|+||+.+||.+-.. +.....|-- --+|..+.. +
T Consensus 11 RPk~F~eIIGQe~iv~~L~nAI~~~-RiaHAYLFsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~sC~~I~~g~h~D 89 (613)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVD 89 (613)
T ss_pred CCCCHHHHCCCHHHHHHHHHHHHCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCC
T ss_conf 7997655238299999999999849-976227755899848899999999996699999999888887899985699998
Q ss_pred CCHHHHHCCCCCCCC-CCCCCCCCCCC-------CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
Q ss_conf 002433112555532-21110012344-------6671475166420018899988887764200112355321234315
Q gi|254780916|r 206 KIEKFLFGDVDLQTK-NSAQFLGKFIE-------ANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRL 277 (482)
Q Consensus 206 ~~e~~lFG~~~~~~~-~~~~~~g~~~~-------a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 277 (482)
.+| .+++.. ...+-..+.+. ...-..++||.+.|+.+.+..||..|++. +.++.+
T Consensus 90 viE------Idaasn~gIDeIReLie~~~~~P~~gkyKV~IIDEah~Ln~~AaNALLKtLEEP-----------P~~viF 152 (613)
T PRK05896 90 IVE------LDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP-----------PKHVVF 152 (613)
T ss_pred EEE------EECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHCCCC-----------CCCCEE
T ss_conf 688------406555788999999997085875799459998162217999999999853489-----------878379
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6521433211111123337999886543344677877442-------222556677764101122333321111100012
Q gi|254780916|r 278 IFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSE-------DIPWLVHFFLQSFCTKNAIKQISISDKALSLLT 350 (482)
Q Consensus 278 Ia~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~e-------DI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~ 350 (482)
|.+|+.. .. -+|+.+-|.. +...++.+ |...+.+.+ ..++++|+..+.
T Consensus 153 IL~Ttep-~K--------------------LLpTIlSRCQrf~Fkri~~~~I~~~-L~~I~~kE~---i~ie~~AL~~Ia 207 (613)
T PRK05896 153 IFATTEF-QK--------------------IPLTIISRCQRYNFKKLNNSELQEL-LKSIAKKEK---IKIEDNAIDKIA 207 (613)
T ss_pred EEEECCH-HH--------------------CCHHHHHCCCCEECCCCCHHHHHHH-HHHHHHHCC---CCCCHHHHHHHH
T ss_conf 9982881-54--------------------9376640355001788998999999-999999739---987899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
Q ss_conf 23389868999999999987438981068895454212
Q gi|254780916|r 351 KYPWIDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSR 388 (482)
Q Consensus 351 ~y~WPGNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~ 388 (482)
... -|-+|.=-+++.+++.. .++.|+.+++...++-
T Consensus 208 ~~a-dGs~RDAlslLdQ~~~~-~~~~it~~~v~~~~g~ 243 (613)
T PRK05896 208 DLA-DGSLRDGLSILDQLSTF-KNKKIDIEDINKTFGL 243 (613)
T ss_pred HHC-CCCHHHHHHHHHHHHHH-CCCCCCHHHHHHHHCC
T ss_conf 976-88487898899999983-5688629999999677
No 202
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.00 E-value=2.6e-06 Score=64.21 Aligned_cols=154 Identities=16% Similarity=0.230 Sum_probs=84.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC-------CCCCCCCCCCCCCCCCCCC
Q ss_conf 111111112222222222222222344320488732777436799999984267-------5433210123465542100
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGK-------RAFFPFFIVNCGMIDQDKI 207 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~-------r~~~~fi~v~c~~~~~~~~ 207 (482)
.....+++||....++++.+-++| .+.-+.++.||+|+||+.++..+-..=- -++...+.+|.+++
T Consensus 181 r~gklDPviGR~~Ei~r~i~iL~R--r~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~Ldl~~L----- 253 (758)
T PRK11034 181 RVGGIDPLIGREKELERAIQVLCR--RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL----- 253 (758)
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHH--HCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHH-----
T ss_conf 828999873848999999999976--3258960216999869999999999997389976558988998458778-----
Q ss_pred HHHHHCCCCCCCCCCCCCC----CCCCCCCCCEEEECCCCHHH---------HHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 2433112555532211100----12344667147516642001---------8899988887764200112355321234
Q gi|254780916|r 208 EKFLFGDVDLQTKNSAQFL----GKFIEANGGTIVLEEPDALP---------LAVQGRIYNFIETGKIEFFDSRGAIRLD 274 (482)
Q Consensus 208 e~~lFG~~~~~~~~~~~~~----g~~~~a~~Gtl~l~ei~~L~---------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 274 (482)
+=|.+ +-|....|. .-++...+-.||+||||.+= .+.-.-|--+|..| +
T Consensus 254 ---iAGtk--yRGefEeRlk~vi~e~~~~~~~ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~LarG-------------~ 315 (758)
T PRK11034 254 ---LAGTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-------------K 315 (758)
T ss_pred ---HCCCC--CCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCC-------------C
T ss_conf ---61686--41549999999999998579859998043442268876777646788745787469-------------7
Q ss_pred CEEEEECCCCCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q ss_conf 31565214332111111233379--99886543344677877442
Q gi|254780916|r 275 VRLIFLTEKNLLPQVKSHVFRKD--LYYRISVFLINISTLRSRSE 317 (482)
Q Consensus 275 ~RiIa~t~~~L~~~~~~g~fr~d--Ly~rL~~~~i~iPpLReR~e 317 (482)
+|+|.+|+.+=-. ..|-+| |=-|...+.|.=|+.-+-..
T Consensus 316 l~~IgaTT~~EYr----k~iekD~AL~RRFq~V~V~EPs~e~t~~ 356 (758)
T PRK11034 316 IRVIGSTTYQEFS----NIFEKDRALARRFQKIDITEPSIEETVQ 356 (758)
T ss_pred CEEEEECCHHHHH----HCCCCCHHHHHCCCEEECCCCCHHHHHH
T ss_conf 2399943779987----5032147888428265318999899999
No 203
>KOG0727 consensus
Probab=97.98 E-value=1e-05 Score=60.09 Aligned_cols=136 Identities=18% Similarity=0.221 Sum_probs=84.3
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC--
Q ss_conf 222222234432048873277743679999998426754332101234655421002433112555532211100123--
Q gi|254780916|r 152 VVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKF-- 229 (482)
Q Consensus 152 v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~-- 229 (482)
++++|+. .-..-||+.|++||||+++|+++-++. ...||.|+.+.+- ..-.|+.. .- ....|
T Consensus 180 ly~qigi--dpprgvllygppg~gktml~kava~~t---~a~firvvgsefv-----qkylgegp-----rm-vrdvfrl 243 (408)
T KOG0727 180 LYKQIGI--DPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFV-----QKYLGEGP-----RM-VRDVFRL 243 (408)
T ss_pred HHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHHCC---CHHEEEECCHHHH-----HHHHCCCC-----HH-HHHHHHH
T ss_conf 9997088--998622775799975789999986126---1114463018999-----99855483-----89-9999998
Q ss_pred -CCCCCCEEEECCCCHH-----------HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC--C-CCCCCHHHH
Q ss_conf -4466714751664200-----------188999888877642001123553212343156521433--2-111111233
Q gi|254780916|r 230 -IEANGGTIVLEEPDAL-----------PLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKN--L-LPQVKSHVF 294 (482)
Q Consensus 230 -~~a~~Gtl~l~ei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~--L-~~~~~~g~f 294 (482)
.+-.-..+|+|||+.. ..++|.-|+.+|..- ++ -....|+.+|-+||+- | ..+..-|++
T Consensus 244 akenapsiifideidaiatkrfdaqtgadrevqril~ellnqm-----dg-fdq~~nvkvimatnradtldpallrpgrl 317 (408)
T KOG0727 244 AKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQM-----DG-FDQTTNVKVIMATNRADTLDPALLRPGRL 317 (408)
T ss_pred HHCCCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC-----CC-CCCCCCEEEEEECCCCCCCCHHHCCCCCC
T ss_conf 7616983798622456766412444463189999999999751-----47-67666558998327555668766287643
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3799988654334467787744222
Q gi|254780916|r 295 RKDLYYRISVFLINISTLRSRSEDI 319 (482)
Q Consensus 295 r~dLy~rL~~~~i~iPpLReR~eDI 319 (482)
.. .|+.| |++|+.--
T Consensus 318 dr---------kiefp-lpdrrqkr 332 (408)
T KOG0727 318 DR---------KIEFP-LPDRRQKR 332 (408)
T ss_pred CC---------CCCCC-CCCHHHHH
T ss_conf 44---------43577-98546652
No 204
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=5.5e-05 Score=54.89 Aligned_cols=209 Identities=16% Similarity=0.196 Sum_probs=112.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCC---CCCC--CCCCCCCCCC---CCCCC
Q ss_conf 11111111222222222222222234432048873277743679999998426---7543--3210123465---54210
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESG---KRAF--FPFFIVNCGM---IDQDK 206 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s---~r~~--~~fi~v~c~~---~~~~~ 206 (482)
....|..++|+....+.+...+.. ......-|+.|+.||||+.+||.+-..- ...+ +| --.|.. -+.+.
T Consensus 13 RPk~F~EVIGQe~Vv~tL~nAI~~-gRIaHAYLF~GPRGvGKTT~ARIfAKaLNC~~~~d~~~p--C~~C~~~~~~s~DV 89 (718)
T PRK07133 13 RPKKFDEIKGQDHIIETLKNIIKS-GKISHAYLFSGPHGTGKTSVAKIFANALNCSHKTDLIEP--CQNCIENFNNNLDI 89 (718)
T ss_pred CCCCHHHHCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC--CCCHHHCCCCCCCE
T ss_conf 899754422859999999999974-997505862389986889999999999679999999997--70214304789873
Q ss_pred CHHHHHCCCCCCCC-CCCCCCCCCCC-----CCC--CEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
Q ss_conf 02433112555532-21110012344-----667--14751664200188999888877642001123553212343156
Q gi|254780916|r 207 IEKFLFGDVDLQTK-NSAQFLGKFIE-----ANG--GTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLI 278 (482)
Q Consensus 207 ~e~~lFG~~~~~~~-~~~~~~g~~~~-----a~~--Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI 278 (482)
+| .+++.. ...+-..+.+. ..| -...+||+|-|+.+.+..||..|++. +.++-+|
T Consensus 90 iE------IDAASn~gVDdIReLie~v~y~P~~gkYKVyIIDEvHMLS~~AfNALLKtLEEP-----------P~hvvFI 152 (718)
T PRK07133 90 IE------MDAASNNGVDEIRELRENVKNLPQISKYKIYIIDEVHMLSKSAFNALLKTLEEP-----------PKHVIFI 152 (718)
T ss_pred EE------ECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCC-----------CCCCEEE
T ss_conf 77------545566888999999998255887787249999662007999999999850279-----------8782799
Q ss_pred EECCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5214332----111111233379998865433446778774422225566777641011223333211111000122338
Q gi|254780916|r 279 FLTEKNL----LPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPW 354 (482)
Q Consensus 279 a~t~~~L----~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~W 354 (482)
.+|+..= .-+....+| .+ |+=+...++.| |...+.+.+ ..++++|+.++....
T Consensus 153 LaTTep~KIP~TIlSRCQrF-------------dF-----krI~~~~I~~~-L~~I~~kE~---I~~e~eAL~lIA~~a- 209 (718)
T PRK07133 153 LATTDVQKIPLTILSRVQRF-------------NF-----RRISEDVIVHQ-LENILEKEK---IKYEKNALKLIASLA- 209 (718)
T ss_pred EEECCHHHCCHHHHHCCEEE-------------EC-----CCCCHHHHHHH-HHHHHHHCC---CCCCHHHHHHHHHHC-
T ss_conf 97088254848774122033-------------58-----88999999999-999999859---977899999999976-
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC
Q ss_conf 986899999999998743898106889545421
Q gi|254780916|r 355 IDNVQELKNILLRAVIGLKDSHLTEDRFVLLLS 387 (482)
Q Consensus 355 PGNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~ 387 (482)
-|-+|.=-+++.++...+ ++.|+..++...++
T Consensus 210 ~GSmRDAlSlLDQv~~f~-ng~it~k~v~~~~G 241 (718)
T PRK07133 210 SGSLRDALSIADQVSIFG-NGNITLKNVNELFG 241 (718)
T ss_pred CCCHHHHHHHHHHHHHHC-CCCCCHHHHHHHHC
T ss_conf 884888987999999854-89872999999967
No 205
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.94 E-value=7.4e-06 Score=61.01 Aligned_cols=118 Identities=16% Similarity=0.121 Sum_probs=69.4
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH---HHHCCCCCCCCCCCCCCCCCCCCCC---CE
Q ss_conf 20488732777436799999984267543321012346554210024---3311255553221110012344667---14
Q gi|254780916|r 163 AIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEK---FLFGDVDLQTKNSAQFLGKFIEANG---GT 236 (482)
Q Consensus 163 ~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~---~lFG~~~~~~~~~~~~~g~~~~a~~---Gt 236 (482)
...++|.|++||||+.+++.+-........+++.++|.......... ..+................++.|.. +.
T Consensus 2 ~~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 97899999997029999999998726689968998759989888987653000112210519999999999998449989
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 75166420018899988887764200112355321234315652143
Q gi|254780916|r 237 IVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEK 283 (482)
Q Consensus 237 l~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~ 283 (482)
+|+||++.+....+..+....... ..........+..+|++++.
T Consensus 82 iiiDei~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~vi~~~n~ 125 (148)
T smart00382 82 LILDEITSLLDAEQEALLLLLEEL---RLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred EEEECCHHHCCCCCHHHHHHHHHH---HHHCCCCCCCCEEEEEEECC
T ss_conf 998275021476207999999999---98517657899899995699
No 206
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=8.5e-06 Score=60.60 Aligned_cols=214 Identities=16% Similarity=0.228 Sum_probs=122.0
Q ss_pred CCCCCCCCCCCCCCCCC---CCCCCCCCCC-------CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 21111111122222222---2222222234-------4320488732777436799999984267543321012346554
Q gi|254780916|r 134 NEHCALDSLIAVSPAMI---QVVDLARKAG-------DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMID 203 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~---~v~~~i~~~a-------~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~ 203 (482)
.....|.+..|..++-+ ++.+.++.-. ....-||+.|++||||+++|+++-.. ++=||..+..+.+-
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgE---A~VPFf~iSGS~FV 220 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGE---AGVPFFSISGSDFV 220 (596)
T ss_pred CCCCCHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHCC---CCCCCEECCCHHHH
T ss_conf 667675664186799999999999863855667523534565268559998727899998454---68983530344464
Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC---CEEEECCCCHHHHHH----------H-HHHHHHHHHHHCCCCCCCC
Q ss_conf 2100243311255553221110012344667---147516642001889----------9-9888877642001123553
Q gi|254780916|r 204 QDKIEKFLFGDVDLQTKNSAQFLGKFIEANG---GTIVLEEPDALPLAV----------Q-GRIYNFIETGKIEFFDSRG 269 (482)
Q Consensus 204 ~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~---Gtl~l~ei~~L~~~~----------Q-~~Ll~~l~~~~~~~~g~~~ 269 (482)
+ .+-| . ..++..-+|++|.. -.+|+|||+.....- . ..|-++|.+-- ..++++
T Consensus 221 e-----mfVG-v-----GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmD--GF~~~~ 287 (596)
T COG0465 221 E-----MFVG-V-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMD--GFGGNE 287 (596)
T ss_pred H-----HHCC-C-----CCHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC--CCCCCC
T ss_conf 4-----3147-8-----8388899999855159966987634331454577889980699999988885201--578887
Q ss_pred CCCCCCEEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 212343156521433--2-1111112333799988654334467787744222255667776410112233332111110
Q gi|254780916|r 270 AIRLDVRLIFLTEKN--L-LPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKAL 346 (482)
Q Consensus 270 ~~~~~~RiIa~t~~~--L-~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~ 346 (482)
. +=+|++||+. | ..+...|+|.. .+.|..|-++.|.+=. +-+++. +.++++.-
T Consensus 288 g----viviaaTNRpdVlD~ALlRpgRFDR-------qI~V~~PDi~gRe~Il--------kvH~~~-----~~l~~~V~ 343 (596)
T COG0465 288 G----VIVIAATNRPDVLDPALLRPGRFDR-------QILVELPDIKGREQIL--------KVHAKN-----KPLAEDVD 343 (596)
T ss_pred C----EEEECCCCCCCCCHHHHCCCCCCCE-------EEECCCCCHHHHHHHH--------HHHHHC-----CCCCCCCC
T ss_conf 5----4885267874333176528877662-------5544785156578887--------886415-----77776678
Q ss_pred CCCCCCCCCCCHH-HHHHHHHHHHH-H--CCCCCCCHHHHHHHHC
Q ss_conf 0012233898689-99999999987-4--3898106889545421
Q gi|254780916|r 347 SLLTKYPWIDNVQ-ELKNILLRAVI-G--LKDSHLTEDRFVLLLS 387 (482)
Q Consensus 347 ~~L~~y~WPGNvR-EL~n~i~r~~i-~--~~~~~i~~~~~~~~l~ 387 (482)
-....+.-||..- .|.|++=.+.+ . .....++..++.....
T Consensus 344 l~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~d 388 (596)
T COG0465 344 LKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAID 388 (596)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCHHHHHH
T ss_conf 889864377856306765566889999883684675345388999
No 207
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00022 Score=50.66 Aligned_cols=223 Identities=12% Similarity=0.169 Sum_probs=126.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCC----CCCC-CCCCCCCCCCCCH
Q ss_conf 2111111112222222222222222344320488732777436799999984267543----3210-1234655421002
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAF----FPFF-IVNCGMIDQDKIE 208 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~----~~fi-~v~c~~~~~~~~e 208 (482)
.....|..++|+.-..+.+...+.. .....--|++|..|+||+.+||.+-..-.-.. .|-= --+|..+....+-
T Consensus 10 ~rp~~f~~~vgq~~v~~~l~~a~~~-~r~~haylf~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~c~~c~~i~~g~~~ 88 (696)
T PRK06872 10 WRPKTFSEVVGQEHILTALSNGLKE-NRLHHAYLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECENCKAIEEGNFI 88 (696)
T ss_pred HCCCCHHHHCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 1887564523859999999999971-986304751178988888999999998678999999978886225767447877
Q ss_pred HHHHCCCCCC-CCCCCCCCCCCCCC-------CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
Q ss_conf 4331125555-32211100123446-------671475166420018899988887764200112355321234315652
Q gi|254780916|r 209 KFLFGDVDLQ-TKNSAQFLGKFIEA-------NGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFL 280 (482)
Q Consensus 209 ~~lFG~~~~~-~~~~~~~~g~~~~a-------~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~ 280 (482)
..+ +.++. .+...+-.-+++.+ .--.-++||+|-|+......||..|++- +..|.+|.+
T Consensus 89 d~~--eidaas~~~v~~~r~l~~~~~~~p~~~~~kvy~idevhmls~~~fnallktleep-----------p~~v~f~la 155 (696)
T PRK06872 89 DLI--EIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEP-----------PEYVKFLLA 155 (696)
T ss_pred CEE--EEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCHHHHHHHHHHHCCC-----------CCCEEEEEE
T ss_conf 546--7505655788999999984545776775479997005443899999998750279-----------754489984
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 14332111111233379998865433446778774422225566777641011223333211111000122338986899
Q gi|254780916|r 281 TEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQE 360 (482)
Q Consensus 281 t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvRE 360 (482)
|+.. .+ +-.-.+..=|-|.|..+ +...++.|+ ...+.+.+ ..++++|+.+|... =-|-+|.
T Consensus 156 tt~~-~k-~p~tilsrc~~f~~~~~------------~~~~i~~~l-~~i~~~e~---~~~~~~al~~~a~~-a~gs~rd 216 (696)
T PRK06872 156 TTDP-QK-LPITILSRCMQFHLKAL------------DQTQIAQHL-EFILTQEN---IPFESPALEKLAKA-AQGSIRD 216 (696)
T ss_pred CCCH-HH-CCHHHHHHHHHEECCCC------------CHHHHHHHH-HHHHHHCC---CCCCHHHHHHHHHH-CCCCHHH
T ss_conf 3863-22-74889876653002689------------999999999-99999849---97799999999997-5895677
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
Q ss_conf 999999998743898106889545421244
Q gi|254780916|r 361 LKNILLRAVIGLKDSHLTEDRFVLLLSREG 390 (482)
Q Consensus 361 L~n~i~r~~i~~~~~~i~~~~~~~~l~~~~ 390 (482)
=-++..+++... ++.|+.+++..-++...
T Consensus 217 alsl~dqai~~~-~g~~~~~~v~~mlg~~~ 245 (696)
T PRK06872 217 SLSLTDQAIAMS-NANITLDVVSNMLGLLD 245 (696)
T ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHCCCC
T ss_conf 888999999975-89616999999858887
No 208
>PRK06620 hypothetical protein; Validated
Probab=97.87 E-value=0.00025 Score=50.21 Aligned_cols=163 Identities=15% Similarity=0.210 Sum_probs=92.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 20488732777436799999984267543321012346554210024331125555322111001234466714751664
Q gi|254780916|r 163 AIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEP 242 (482)
Q Consensus 163 ~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei 242 (482)
..+++|.|++|+||+++++..-+.+ +..+ +++..+++. .+ .+.+.+++|+|
T Consensus 44 ~~~l~I~Gp~gSGKTHL~~i~~~~~---~a~~--~~~~~~~~~----------------------~~--~~~~~~iiddi 94 (214)
T PRK06620 44 KFTLLIKGPSSSGKTYLTKIWQNLS---NAYI--IKDIFFNEE----------------------IL--EKYNAFIIEDI 94 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH---CCEE--ECHHHCCHH----------------------HH--HHCCCEEEECC
T ss_conf 5559998799998899999999982---8588--151214587----------------------88--43793798467
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_conf 2001889998888776420011235532123431565214332111111233379998865433-446778774422225
Q gi|254780916|r 243 DALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFL-INISTLRSRSEDIPW 321 (482)
Q Consensus 243 ~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~-i~iPpLReR~eDI~~ 321 (482)
+..+.+..-.|+..+.+. ...++.+++..+.+. . -+||--||..+. +.+.+. +| .
T Consensus 95 d~~~e~~lfhlfN~~~~~-------------~~~llits~~~p~~~----~-L~DL~SRl~~~~~~~i~~P----dD-~- 150 (214)
T PRK06620 95 ENWQEPALLHIFNIINEK-------------QKYLLLTSSDKSRNF----T-LPDLSSRIKSVLSILLNSP----DD-E- 150 (214)
T ss_pred CCCCHHHHHHHHHHHHHC-------------CCEEEEEECCCCCCC----C-CCCHHHHHHCCCEEECCCC----CH-H-
T ss_conf 757467999999999715-------------987999827985224----5-3578999854644332698----98-9-
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--HCCCCCCCHHHH
Q ss_conf 5667776410112233332111110001223389868999999999987--438981068895
Q gi|254780916|r 322 LVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVI--GLKDSHLTEDRF 382 (482)
Q Consensus 322 L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i--~~~~~~i~~~~~ 382 (482)
+....+.+++...+ ..++++.++.|..+ .+-|++.+..++..+-- +..+..|+..-+
T Consensus 151 l~~~ll~k~~~~r~---i~i~~~vi~yl~~r-i~Rs~~~l~~~v~~ld~~sl~~kr~Iti~li 209 (214)
T PRK06620 151 LIKILIFKHFSISS---VTISRQIIDFLLVN-LPREYSKIIEILENINYFALISKRKITISLV 209 (214)
T ss_pred HHHHHHHHHHHHCC---CCCCHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 99999999999869---98875599999998-5178999999999999999983999889999
No 209
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=97.85 E-value=0.00016 Score=51.63 Aligned_cols=223 Identities=11% Similarity=0.133 Sum_probs=125.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCC----C-CCCCCCCCCCCCCH
Q ss_conf 211111111222222222222222234432048873277743679999998426754332----1-01234655421002
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFP----F-FIVNCGMIDQDKIE 208 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~----f-i~v~c~~~~~~~~e 208 (482)
.....|..++|+.-..+.+...+.. .....--|++|..|+||+.+||.+-+.-.-..++ - .--+|..+....+-
T Consensus 10 ~rp~~f~~~~gq~~~~~~l~~~~~~-~~~~~a~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~c~~i~~~~~~ 88 (705)
T PRK05648 10 WRPRSFREMVGQTHVLKALINALDN-QRLHHAYLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSVCREIDEGRFV 88 (705)
T ss_pred HCCCCHHHHCCHHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 1787576632819999999999970-986304650078988898999999998677899988978776004666248977
Q ss_pred HHHHCCCCCC-CCCCCCCCCCCCC-------CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
Q ss_conf 4331125555-3221110012344-------6671475166420018899988887764200112355321234315652
Q gi|254780916|r 209 KFLFGDVDLQ-TKNSAQFLGKFIE-------ANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFL 280 (482)
Q Consensus 209 ~~lFG~~~~~-~~~~~~~~g~~~~-------a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~ 280 (482)
..+ +.++. .....+-.-+++. ..--..++||+|-|+...=.-||..|++- +.+|.+|.+
T Consensus 89 d~~--e~d~as~~~v~~~r~~~~~~~~~p~~~~~kv~~idevhmls~~~fnallktleep-----------p~~v~f~~a 155 (705)
T PRK05648 89 DLI--EVDAASRTKVEDTRELLDNVQYAPTRGRYKVYLIDEVHMLSSHSFNALLKTLEEP-----------PPHVKFLLA 155 (705)
T ss_pred CEE--EECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCHHHHHHHHHHCCCC-----------CCCEEEEEE
T ss_conf 634--4515544788999999985551776774579998426541799999998740479-----------754599984
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 14332111111233379998865433446778774422225566777641011223333211111000122338986899
Q gi|254780916|r 281 TEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQE 360 (482)
Q Consensus 281 t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvRE 360 (482)
|+.. .++- --.+.+=|-|.|..+ ....++.|+ .....+.| ..++++|+.++... --|-+|.
T Consensus 156 tt~~-~k~p-~t~~src~~~~~~~~------------~~~~~~~~l-~~~~~~e~---~~~~~~~~~~~~~~-~~g~~rd 216 (705)
T PRK05648 156 TTDP-QKLP-VTILSRCLQFSLKNM------------SPERVVEHL-SHVLGAEN---VPFEEDALWLLGRA-ADGSMRD 216 (705)
T ss_pred CCCH-HHCC-HHHHHHHHHCCCCCC------------CHHHHHHHH-HHHHHHCC---CCCCHHHHHHHHHH-CCCCHHH
T ss_conf 2873-5375-899976643023689------------999999999-99999759---97789999999997-4896777
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
Q ss_conf 999999998743898106889545421244
Q gi|254780916|r 361 LKNILLRAVIGLKDSHLTEDRFVLLLSREG 390 (482)
Q Consensus 361 L~n~i~r~~i~~~~~~i~~~~~~~~l~~~~ 390 (482)
=-++..+++..+ ++.|+.+++..-++...
T Consensus 217 ~ls~~dq~~~~~-~~~~~~~~v~~mlg~~~ 245 (705)
T PRK05648 217 AMSLTDQAIAFG-EGKVLAADVRAMLGTLD 245 (705)
T ss_pred HHHHHHHHHHCC-CCCCCHHHHHHHHCCCC
T ss_conf 999999998606-88407999999858887
No 210
>PRK08116 hypothetical protein; Validated
Probab=97.80 E-value=1.9e-05 Score=58.07 Aligned_cols=139 Identities=19% Similarity=0.207 Sum_probs=78.0
Q ss_pred CCCCCCCCCCCCCC---CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHC-CCCCCCCCC
Q ss_conf 22222222222234---43204887327774367999999842675433210123465542100243311-255553221
Q gi|254780916|r 147 PAMIQVVDLARKAG---DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNS 222 (482)
Q Consensus 147 ~~m~~v~~~i~~~a---~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG-~~~~~~~~~ 222 (482)
+++....+.+.... ..+..+++.|.+||||+++|-+|-+.--..+.+-+-++.. +++ .+|.. ..++.....
T Consensus 89 ~a~~~a~~Y~~~f~~~~~~~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~----~ll-~~lk~~~~~~~~~~~ 163 (262)
T PRK08116 89 KAYKVAVKYVKKFEEMKKESVGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVP----ELL-NRIKSTYNSEGKEDE 163 (262)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH----HHH-HHHHHHHHCCCCHHH
T ss_conf 999999999998987364686189989899989999999999999879939998899----999-999999863561019
Q ss_pred CCCCCCCCCCCCCEEEECCCCH--HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 1100123446671475166420--01889998888776420011235532123431565214332111111233379998
Q gi|254780916|r 223 AQFLGKFIEANGGTIVLEEPDA--LPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYY 300 (482)
Q Consensus 223 ~~~~g~~~~a~~Gtl~l~ei~~--L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~ 300 (482)
.+....+.. ---|+||+++. .+...+..|+.+|+.+. . ..++ +|.+||.+++++.. .|-+-.|.
T Consensus 164 ~e~l~~l~~--~dLLIiDDlG~e~~t~w~~e~lf~IIn~Ry-~---~~kp------tIiTTNl~~~eL~~--~~~~Ri~s 229 (262)
T PRK08116 164 NEIIRALDN--ADLLILDDLGAEKDTEWVREKLYNIIDSRY-R---KGLP------TIFTTNLSLEELKN--QYGKRTYS 229 (262)
T ss_pred HHHHHHHHC--CCEEEEEHHCCCCCCHHHHHHHHHHHHHHH-H---CCCC------EEEECCCCHHHHHH--HHHHHHHH
T ss_conf 999998612--998998322145698789999999999999-7---6999------89987999999999--86379999
Q ss_pred HHHH
Q ss_conf 8654
Q gi|254780916|r 301 RISV 304 (482)
Q Consensus 301 rL~~ 304 (482)
||..
T Consensus 230 Rl~e 233 (262)
T PRK08116 230 RILE 233 (262)
T ss_pred HHHH
T ss_conf 9986
No 211
>KOG0989 consensus
Probab=97.80 E-value=0.00015 Score=51.85 Aligned_cols=208 Identities=17% Similarity=0.157 Sum_probs=112.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE-EEEECCCCCHHHHHHHHHHHCCCCCCCCC----CCCCCCCCCC-CCCH
Q ss_conf 1111111122222222222222223443204-88732777436799999984267543321----0123465542-1002
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIP-IMIQGEFGVGKKRLSRFIHESGKRAFFPF----FIVNCGMIDQ-DKIE 208 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~-vli~Ge~GtGK~~~A~~iH~~s~r~~~~f----i~v~c~~~~~-~~~e 208 (482)
....++.++|+....+.+...+.+ -+.| .|+.|++||||+..|++.-..-.- ...| ...|.+.... +..-
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~---~~lp~~LFyGPpGTGKTStalafar~L~~-~~~~~~rvl~lnaSderGisvvr 106 (346)
T KOG0989 31 RPKTFDELAGQEHVVQVLKNALLR---RILPHYLFYGPPGTGKTSTALAFARALNC-EQLFPCRVLELNASDERGISVVR 106 (346)
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHH---CCCCEEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCCHHHHCCCCCCCCCCHH
T ss_conf 787377650159999999999860---68860786689998676899999998557-42355542431366001431006
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 43311255553221110012344667147516642001889998888776420011235532123431565214332111
Q gi|254780916|r 209 KFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQ 288 (482)
Q Consensus 209 ~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~ 288 (482)
..+++..+- +.......|.- .----++.|||-+.|+-+.|.-|.|++++- .-.+|+|..||.- ..+
T Consensus 107 ~Kik~fakl-~~~~~~~~~~~-~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~-----------s~~trFiLIcnyl-sri 172 (346)
T KOG0989 107 EKIKNFAKL-TVLLKRSDGYP-CPPFKIIILDECDSMTSDAQAALRRTMEDF-----------SRTTRFILICNYL-SRI 172 (346)
T ss_pred HHHCCHHHH-HHCCCCCCCCC-CCCCEEEEEECHHHHHHHHHHHHHHHHHCC-----------CCCEEEEEECCCH-HHC
T ss_conf 652379987-50255656788-986328997416453099999999998625-----------4665999973885-647
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 11123337999886543344677877442222556677764101122333321111100012233898689999999999
Q gi|254780916|r 289 VKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRA 368 (482)
Q Consensus 289 ~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~ 368 (482)
+ .-+--|.+ .++.|||-+ +||-.- |+..|.+.|. .++++|++.+..+. -|..|.=..+++.+
T Consensus 173 i------~pi~SRC~--KfrFk~L~d--~~iv~r----L~~Ia~~E~v---~~d~~al~~I~~~S-~GdLR~Ait~Lqsl 234 (346)
T KOG0989 173 I------RPLVSRCQ--KFRFKKLKD--EDIVDR----LEKIASKEGV---DIDDDALKLIAKIS-DGDLRRAITTLQSL 234 (346)
T ss_pred C------HHHHHHHH--HHCCCCCCH--HHHHHH----HHHHHHHHCC---CCCHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_conf 7------28774677--712887644--789999----9999888589---97878999999973-87289999999986
Q ss_pred HHHCCCCCCCHH
Q ss_conf 874389810688
Q gi|254780916|r 369 VIGLKDSHLTED 380 (482)
Q Consensus 369 ~i~~~~~~i~~~ 380 (482)
.. .|..|+..
T Consensus 235 s~--~gk~It~~ 244 (346)
T KOG0989 235 SL--LGKRITTS 244 (346)
T ss_pred HC--CCCCCCHH
T ss_conf 10--47636458
No 212
>KOG0737 consensus
Probab=97.78 E-value=2.5e-05 Score=57.28 Aligned_cols=177 Identities=17% Similarity=0.189 Sum_probs=96.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 32048873277743679999998426754332101234655421002433112555532211100123446671475166
Q gi|254780916|r 162 CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEE 241 (482)
Q Consensus 162 ~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~e 241 (482)
-..-||+.|++||||+++|+++-.. +..+||.|..+.+++ +-||+..-...+......++ ..-.+|+||
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Ake---aga~fInv~~s~lt~-----KWfgE~eKlv~AvFslAsKl---~P~iIFIDE 194 (386)
T KOG0737 126 PPKGILLYGPPGTGKTMLAKAIAKE---AGANFINVSVSNLTS-----KWFGEAQKLVKAVFSLASKL---QPSIIFIDE 194 (386)
T ss_pred CCCCCEECCCCCCHHHHHHHHHHHH---CCCCCCEEECCCCCH-----HHHHHHHHHHHHHHHHHHHC---CCCEEEHHH
T ss_conf 8643051189982188999999987---279710001365532-----66777888999998206534---861565665
Q ss_pred CCHHHHHHH---HHHHHHHHHHHCCCC-CCC-CCCCCCCEEEEECCCC--CCCCCCHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 420018899---988887764200112-355-3212343156521433--211111123337999886-54334467787
Q gi|254780916|r 242 PDALPLAVQ---GRIYNFIETGKIEFF-DSR-GAIRLDVRLIFLTEKN--LLPQVKSHVFRKDLYYRI-SVFLINISTLR 313 (482)
Q Consensus 242 i~~L~~~~Q---~~Ll~~l~~~~~~~~-g~~-~~~~~~~RiIa~t~~~--L~~~~~~g~fr~dLy~rL-~~~~i~iPpLR 313 (482)
|+.+-..=| ..-.+.+ ..+|.-. ++. ..-...+-|++|||++ |++.+ .-|+ ..++|.+|...
T Consensus 195 vds~L~~R~s~dHEa~a~m-K~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAi---------iRR~p~rf~V~lP~~~ 264 (386)
T KOG0737 195 VDSFLGQRRSTDHEATAMM-KNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAI---------IRRLPRRFHVGLPDAE 264 (386)
T ss_pred HHHHHHHCCCCHHHHHHHH-HHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHH---------HHHCCCEEEECCCCHH
T ss_conf 8889864046427999999-99999986164678871599970799984378999---------9847643653798444
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 74422225566777641011223333211111000-122338986899999999998743
Q gi|254780916|r 314 SRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSL-LTKYPWIDNVQELKNILLRAVIGL 372 (482)
Q Consensus 314 eR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~-L~~y~WPGNvREL~n~i~r~~i~~ 372 (482)
+|. .|.-+ +|+.-..+- .|+-.-++. =..|. -++|+|+|..|....
T Consensus 265 qR~-kILkv---iLk~e~~e~-----~vD~~~iA~~t~GyS----GSDLkelC~~Aa~~~ 311 (386)
T KOG0737 265 QRR-KILKV---ILKKEKLED-----DVDLDEIAQMTEGYS----GSDLKELCRLAALRP 311 (386)
T ss_pred HHH-HHHHH---HHCCCCCCC-----CCCHHHHHHHCCCCC----HHHHHHHHHHHHHHH
T ss_conf 499-99999---942434687-----769888887608986----778999999876768
No 213
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.76 E-value=8.5e-05 Score=53.53 Aligned_cols=114 Identities=14% Similarity=0.189 Sum_probs=75.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCC---CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 4320488732777436799999984267543321012---3465542100243311255553221110012344667147
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIV---NCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTI 237 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v---~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl 237 (482)
..+.+||+.|.+||+|.-+-+++|..++|. -|..= ..++++.... ..+..||...--.|.+-.|++|..
T Consensus 491 RgdIniLl~GDPgtaKSQlL~yv~~iaPRg--vytsGkgsSavGLTA~v~------~~d~~tg~~~LEaGALVLaD~Gvc 562 (916)
T PTZ00111 491 RGIINVLLCGDPGTAKSQLLHYTHLLSPRS--IYTSGKSSSSVGLTASIK------FNESDNGRAMIQPGAVVLANGGVC 562 (916)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCE--EEECCCCCCCCCCEEEEE------ECCCCCCCEEEECCCEEECCCCEE
T ss_conf 454059995799601899999999728742--674598654226468998------326887868985480897279879
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCEEEEECC
Q ss_conf 5166420018899988887764200112--35532123431565214
Q gi|254780916|r 238 VLEEPDALPLAVQGRIYNFIETGKIEFF--DSRGAIRLDVRLIFLTE 282 (482)
Q Consensus 238 ~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~RiIa~t~ 282 (482)
++||.+.|+...+..|..+++.+.+.-- |-.-.....+-|+|+.|
T Consensus 563 cIDEFDKM~~~~rs~lhEaMEQQtvSIAKAGI~~tLnARtSvLAaAN 609 (916)
T PTZ00111 563 CIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCN 609 (916)
T ss_pred EEEHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHCC
T ss_conf 96222036856788999988663123532350454120345655328
No 214
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=97.74 E-value=9e-05 Score=53.35 Aligned_cols=189 Identities=16% Similarity=0.231 Sum_probs=115.8
Q ss_pred CCCCCCCCCC-CCCEEEEEECCCCCHHHHHH----HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC
Q ss_conf 2222222234-43204887327774367999----999842675433210123465542100243311255553221110
Q gi|254780916|r 151 QVVDLARKAG-DCAIPIMIQGEFGVGKKRLS----RFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQF 225 (482)
Q Consensus 151 ~v~~~i~~~a-~~~~~vli~Ge~GtGK~~~A----~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~ 225 (482)
+++....-.+ .-...+-.+|.+||||+.+| ..+|..+.-+.+.+|++.- ++++ -...||. ....
T Consensus 45 ~~r~~~~l~~~~P~lhm~ftG~PGtGkttva~~m~~~l~~lGy~r~G~~~~~tr----ddlv-Gqy~Ght------aPkt 113 (284)
T TIGR02880 45 RLRQKLGLASAAPSLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLV-GQYIGHT------APKT 113 (284)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEH----HHHH-HHHHCCC------CCHH
T ss_conf 999874221048832677516898724899999999998715400362678530----0131-1221257------7226
Q ss_pred CCCCCCCCCCEEEECCCCHHHH---------HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHH
Q ss_conf 0123446671475166420018---------8999888877642001123553212343156521433211111123337
Q gi|254780916|r 226 LGKFIEANGGTIVLEEPDALPL---------AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRK 296 (482)
Q Consensus 226 ~g~~~~a~~Gtl~l~ei~~L~~---------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~ 296 (482)
...+.+|.||.||+||--.|-. +.-.-||+++++.+ -++=||.+--.| |-
T Consensus 114 ke~lk~a~GGvlfideayyly~P~nerdyG~eaieillq~men~r-----------~~lvvi~aGy~~----------rm 172 (284)
T TIGR02880 114 KEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR-----------DDLVVILAGYKD----------RM 172 (284)
T ss_pred HHHHHHHCCCEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCCC-----------CCEEEEEECCHH----------HH
T ss_conf 899987428736642203321776410223799999999872365-----------537888717078----------88
Q ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9998865-------433446778774422225566777641011223333211111000122338986899999999998
Q gi|254780916|r 297 DLYYRIS-------VFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAV 369 (482)
Q Consensus 297 dLy~rL~-------~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~ 369 (482)
|-||.=| ..+|..|--. .+++..++..+++....++.......-.+.+..=...+|=.|-|-.+|.+.|+-
T Consensus 173 ~~f~~snPG~~sr~a~h~~fPdy~--~~~l~~ia~~~l~~~~y~~~~~~~~~~~~y~~~r~~~P~f~nars~rna~dr~r 250 (284)
T TIGR02880 173 DSFFESNPGLSSRVAHHVDFPDYS--EEELLAIAELMLEEQQYRLSAEAEEALADYIALRRKQPFFANARSIRNALDRAR 250 (284)
T ss_pred HHHHHCCCCHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 887511786246776431588877--678999999988654121118899999999998631783146788999998898
Q ss_pred HHCC
Q ss_conf 7438
Q gi|254780916|r 370 IGLK 373 (482)
Q Consensus 370 i~~~ 373 (482)
+-..
T Consensus 251 lr~a 254 (284)
T TIGR02880 251 LRQA 254 (284)
T ss_pred HHHH
T ss_conf 8889
No 215
>KOG0738 consensus
Probab=97.73 E-value=9e-05 Score=53.34 Aligned_cols=174 Identities=18% Similarity=0.180 Sum_probs=97.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC---CCCEEEEC
Q ss_conf 048873277743679999998426754332101234655421002433112555532211100123446---67147516
Q gi|254780916|r 164 IPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEA---NGGTIVLE 240 (482)
Q Consensus 164 ~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a---~~Gtl~l~ 240 (482)
.-||+.|++||||+++|+++..... .-|..|..+.+..- --|+. ..-..=+|+.| .--|+|||
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~---tTFFNVSsstltSK-----wRGeS------EKlvRlLFemARfyAPStIFiD 311 (491)
T KOG0738 246 KGVLMVGPPGTGKTLLAKAVATECG---TTFFNVSSSTLTSK-----WRGES------EKLVRLLFEMARFYAPSTIFID 311 (491)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC---CEEEEECHHHHHHH-----HCCCH------HHHHHHHHHHHHHHCCCEEEHH
T ss_conf 0005567999747899999988616---72787402456555-----32526------9999999999987488535335
Q ss_pred CCCHHH------------HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 642001------------88999888877642001123553212343156521433211111123337999886543344
Q gi|254780916|r 241 EPDALP------------LAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLIN 308 (482)
Q Consensus 241 ei~~L~------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~ 308 (482)
||+.|. ..+-..||-.++ | ++......--|-+.|+||-+- +. ++ .||..|=-| +-|.
T Consensus 312 EIDslcs~RG~s~EHEaSRRvKsELLvQmD-G----~~~t~e~~k~VmVLAATN~PW-di-DE-AlrRRlEKR---IyIP 380 (491)
T KOG0738 312 EIDSLCSQRGGSSEHEASRRVKSELLVQMD-G----VQGTLENSKVVMVLAATNFPW-DI-DE-ALRRRLEKR---IYIP 380 (491)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-C----CCCCCCCCEEEEEEECCCCCC-CH-HH-HHHHHHHHH---EEEE
T ss_conf 677887257986503678888889999863-3----444445651699984368982-05-79-999987630---3312
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 677877442222556677764101122333321111100012233898689999999999874389
Q gi|254780916|r 309 ISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKD 374 (482)
Q Consensus 309 iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~~ 374 (482)
+|.--.|..=|..+.. ... .....-.++..+.+..|. -.+..|+|+.+.++.-.
T Consensus 381 LP~~~~R~~Li~~~l~----~~~----~~~~~~~~~lae~~eGyS----GaDI~nvCreAsm~~mR 434 (491)
T KOG0738 381 LPDAEARSALIKILLR----SVE----LDDPVNLEDLAERSEGYS----GADITNVCREASMMAMR 434 (491)
T ss_pred CCCHHHHHHHHHHHHC----CCC----CCCCCCHHHHHHHHCCCC----HHHHHHHHHHHHHHHHH
T ss_conf 8787899999997623----566----888756999999856887----37799999999999999
No 216
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I; InterPro: IPR011775 This entry represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll . This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. It is also found in certain archaea not known to make chlorins.; GO: 0005524 ATP binding, 0016851 magnesium chelatase activity, 0006779 porphyrin biosynthetic process.
Probab=97.71 E-value=7.7e-05 Score=53.83 Aligned_cols=185 Identities=18% Similarity=0.197 Sum_probs=108.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC----CCCCCCCCCCCC-------------
Q ss_conf 111122222222222222223443204887327774367999999842675----433210123465-------------
Q gi|254780916|r 139 LDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKR----AFFPFFIVNCGM------------- 201 (482)
Q Consensus 139 ~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r----~~~~fi~v~c~~------------- 201 (482)
|..|+|+.. | ++-=.++-+--.=-=|||.|..||||++.-|++=+.=+. ++.| +||+=
T Consensus 3 F~AIVGQ~e-m-KlAllL~vidP~IGGVmvmGdRGTgKSTavRALAalLP~IkaVagcP---~n~~Ps~~~~~c~e~r~~ 77 (340)
T TIGR02030 3 FSAIVGQEE-M-KLALLLTVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCP---FNSAPSDREELCEEVRIL 77 (340)
T ss_pred CEEEECHHH-H-HHHHHHEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCCC---CCCCCCCCCCCCHHHHHH
T ss_conf 315641688-8-77775200068856288867789835689999997499407861768---788888861357677775
Q ss_pred ---------------------CCCCCCHHHHHCC---CCCCC-CCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf ---------------------5421002433112---55553-2211100123446671475166420018899988887
Q gi|254780916|r 202 ---------------------IDQDKIEKFLFGD---VDLQT-KNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNF 256 (482)
Q Consensus 202 ---------------------~~~~~~e~~lFG~---~~~~~-~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~ 256 (482)
+|--.-|...-|- +++.| |...-.+|+|.+||.|-||+|||.-|.-.+=.-||-+
T Consensus 78 ~~~~Gkt~~~~~i~~pvpvVDLPLGaTEDRVcGtlDIerALt~GvkAFePGLLArANRG~LYiDEVNLLeDHlVDvLLDv 157 (340)
T TIGR02030 78 EDSSGKTKKLAVIEKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGYLYIDEVNLLEDHLVDVLLDV 157 (340)
T ss_pred HHCCCCCCCCEEEECCCCEEECCCCCCCCCEECHHHHHHHHHCCCCCCCCCCHHHHCCCCEEEEEEHHHHHHHHHHHHHH
T ss_conf 31268656751551576536479886213134402476775047210366304666178425521000124566566522
Q ss_pred HHHH--HCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH----HHHHHHHH----HHHHHHHHHHHHH
Q ss_conf 7642--001123553212343156521433211111123337999886543----34467787----7442222556677
Q gi|254780916|r 257 IETG--KIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVF----LINISTLR----SRSEDIPWLVHFF 326 (482)
Q Consensus 257 l~~~--~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~----~i~iPpLR----eR~eDI~~L~~~f 326 (482)
=+.| .++|=|= ++.=..|++--=|.|++ +|.+|+-|+.|.... +|+=|.+| +|+..--.==+-|
T Consensus 158 AasG~NvVEREG~--SiRHPARFVLVGSGNPE----EGeLRPQLLDRFGlhaeirt~rdve~RVeiv~rR~eyDadp~aF 231 (340)
T TIGR02030 158 AASGVNVVEREGV--SIRHPARFVLVGSGNPE----EGELRPQLLDRFGLHAEIRTVRDVEERVEIVKRRDEYDADPFAF 231 (340)
T ss_pred CCCCCEEEEECCE--EEECCCCEEEECCCCCC----CCCCCCHHHHHCCCEEEEECCCCHHHHHHHEEEHHHHCCCCCHH
T ss_conf 0478305863560--23037635871578887----66667401524465278722677222012201003317788534
Q ss_pred HHHHCCCC
Q ss_conf 76410112
Q gi|254780916|r 327 LQSFCTKN 334 (482)
Q Consensus 327 l~~~~~~~ 334 (482)
+++|..+.
T Consensus 232 ~ekw~~E~ 239 (340)
T TIGR02030 232 VEKWAKED 239 (340)
T ss_pred HHHHHHHH
T ss_conf 55578889
No 217
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.00024 Score=50.41 Aligned_cols=223 Identities=14% Similarity=0.151 Sum_probs=125.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC-----CCCCCC-----CCCCCCCC
Q ss_conf 21111111122222222222222223443204887327774367999999842675-----433210-----12346554
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKR-----AFFPFF-----IVNCGMID 203 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r-----~~~~fi-----~v~c~~~~ 203 (482)
-....|..+||+.-..+.+...+.. .....--|++|..|+||+.+||.+-..-.- ..++-. --+|-.+.
T Consensus 10 ~RP~~F~~~vGQ~~v~~~l~na~~~-~r~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~C~~i~ 88 (721)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQ-QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRACTEID 88 (721)
T ss_pred HCCCCHHHHCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 0798665532859999999999971-997544750279988898999999999768998667898788787765468775
Q ss_pred CCCCHHHHHCCCCCC-CCCCCCCCCCCCC-------CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 210024331125555-3221110012344-------66714751664200188999888877642001123553212343
Q gi|254780916|r 204 QDKIEKFLFGDVDLQ-TKNSAQFLGKFIE-------ANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDV 275 (482)
Q Consensus 204 ~~~~e~~lFG~~~~~-~~~~~~~~g~~~~-------a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 275 (482)
...+-.. + +.++. .....+-.-+++. ..--..++||+|-|+...-.-||..|++- +-+|
T Consensus 89 ~g~~~d~-~-EiDaas~~~v~~~r~l~~~~~y~P~~~~~KvyiiDevhmls~~afnalLKtlEeP-----------P~hv 155 (721)
T PRK12323 89 AGRFVDY-I-EMDAASNRGVDEMAQLLDQAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP-----------PPHV 155 (721)
T ss_pred CCCCCCE-E-EEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCC-----------CCCE
T ss_conf 6898764-7-7436767888999999985455887664469998540005899999999840179-----------7553
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 15652143321111112333799988654334467787744222255667776410112233332111110001223389
Q gi|254780916|r 276 RLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWI 355 (482)
Q Consensus 276 RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WP 355 (482)
.+|.+|+.. .++- .-....=+-|.|.- =+...++.| |...+.+.+ ..++++|+.++... =-
T Consensus 156 ~FilaTT~~-~Kip-~TilSRc~~f~~~~------------~~~~~i~~~-l~~i~~~E~---i~~~~~al~~ia~~-a~ 216 (721)
T PRK12323 156 KFILATTDP-QKIP-VTVLSRCLQFNLKQ------------MPPGHIVSH-LDAILGQEG---IGHEGNALRLLAQA-AH 216 (721)
T ss_pred EEEEECCCH-HHCC-HHHHHHHHHCCCCC------------CCHHHHHHH-HHHHHHHCC---CCCCHHHHHHHHHH-CC
T ss_conf 899943863-4485-88987765423478------------999999999-999999839---97799999999997-58
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
Q ss_conf 86899999999998743898106889545421244
Q gi|254780916|r 356 DNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREG 390 (482)
Q Consensus 356 GNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~~ 390 (482)
|-+|.=-+++.+++..+. +.|+.+++...++...
T Consensus 217 Gs~RDalslldQaia~~~-g~~~~~~v~~mlg~~d 250 (721)
T PRK12323 217 GSMRDALSLTDQAIAYSA-GNVSEEAVRGMLGAID 250 (721)
T ss_pred CCHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCC
T ss_conf 964768889999998658-9626999999868887
No 218
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.59 E-value=8.1e-05 Score=53.67 Aligned_cols=137 Identities=16% Similarity=0.198 Sum_probs=83.0
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHH--HHCCCCCCCCCCC
Q ss_conf 22222222222223443204887327774367999999842675433210123465542100243--3112555532211
Q gi|254780916|r 146 SPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKF--LFGDVDLQTKNSA 223 (482)
Q Consensus 146 S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~--lFG~~~~~~~~~~ 223 (482)
-+++...+..+..........++.|.+||||+++|-+|-+.--.+..+.+-+..+ +++... -|+..+ . ...
T Consensus 79 ~~al~~a~~y~enf~~~~~gLlF~G~~GTGKThLA~aIan~Li~~G~sVlf~t~~----dLl~~lr~t~~~~~-~--~e~ 151 (242)
T PRK07952 79 MNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVA----DIMSAMKDTFRNSE-T--SEE 151 (242)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH----HHHHHHHHHHHCCC-C--CHH
T ss_conf 9999999999986543887179978999978999999999999879949997799----99999999980687-5--699
Q ss_pred CCCCCCCCCCCCEEEECCCCH--HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 100123446671475166420--018899988887764200112355321234315652143321111112333799988
Q gi|254780916|r 224 QFLGKFIEANGGTIVLEEPDA--LPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYR 301 (482)
Q Consensus 224 ~~~g~~~~a~~Gtl~l~ei~~--L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~r 301 (482)
+..-.+. +-.-|+|||++. .+...+..|..++..+. . ..+| .|.+||.+++++-. .+-+-.+.|
T Consensus 152 ~~l~~l~--~~dLLIiDdlG~e~~t~~~~~~lf~iId~Ry-~---~~kp------~IitTNl~~~eL~~--~lGeR~~dR 217 (242)
T PRK07952 152 QLLNDLS--NVDLLVIDEIGVQTESRYEKVIINQIVDRRS-S---SKRP------TGMLTNSNMEEMTK--LLGERVMDR 217 (242)
T ss_pred HHHHHHH--CCCEEEEECCCCCCCCHHHHHHHHHHHHHHH-H---CCCC------EEEEECCCHHHHHH--HHHHHHHHH
T ss_conf 9999863--1898987301466588889999999999999-7---1698------89981799999999--970899999
Q ss_pred HH
Q ss_conf 65
Q gi|254780916|r 302 IS 303 (482)
Q Consensus 302 L~ 303 (482)
|.
T Consensus 218 l~ 219 (242)
T PRK07952 218 MR 219 (242)
T ss_pred HH
T ss_conf 97
No 219
>PRK08181 transposase; Validated
Probab=97.57 E-value=3.5e-05 Score=56.22 Aligned_cols=138 Identities=12% Similarity=0.118 Sum_probs=73.2
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 23443204887327774367999999842675433210123465542100243311255553221110012344667147
Q gi|254780916|r 158 KAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTI 237 (482)
Q Consensus 158 ~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl 237 (482)
+......+|+|.|++||||+++|-+|-..--+.+..-.-+.|+.+=.++..+ +.+ +........+..+ --|
T Consensus 101 ~fi~~~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~~~L~~a----~~~---~~~~~~~~~l~~~--dLL 171 (269)
T PRK08181 101 SWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVA----RRE---LQLESAIAKLDKF--DLL 171 (269)
T ss_pred HHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH----HHC---CCHHHHHHHHHCC--CEE
T ss_conf 5886487089989999878899999999999879939997899999999997----755---8399999997444--601
Q ss_pred EECCCCHHHHHHHH--HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCC---CCCHHHHHHHHHHHH----HHHHHH
Q ss_conf 51664200188999--888877642001123553212343156521433211---111123337999886----543344
Q gi|254780916|r 238 VLEEPDALPLAVQG--RIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLP---QVKSHVFRKDLYYRI----SVFLIN 308 (482)
Q Consensus 238 ~l~ei~~L~~~~Q~--~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~---~~~~g~fr~dLy~rL----~~~~i~ 308 (482)
+|||++.+|.+.+. -|++++.++ +.+ + -+|.+||.+..+ ...+...-.-+..|| .++.+.
T Consensus 172 IiDe~G~~~~~~~~~~~lf~lI~~R-ye~----~------S~IITSn~~~~~W~~~f~D~~la~AiLDRLvH~a~~i~l~ 240 (269)
T PRK08181 172 ILDDLAYVTKDQAETSVLFELISAR-YER----R------SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMN 240 (269)
T ss_pred EEHHCCCCCCCHHHHHHHHHHHHHH-HCC----C------CEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCEEEEEEC
T ss_conf 2201056679989999999999998-578----8------8899889997788775386889999999870152899755
Q ss_pred HHHHHHH
Q ss_conf 6778774
Q gi|254780916|r 309 ISTLRSR 315 (482)
Q Consensus 309 iPpLReR 315 (482)
=++.|-|
T Consensus 241 GeSyR~k 247 (269)
T PRK08181 241 VESYRRR 247 (269)
T ss_pred CCCCCCH
T ss_conf 8761205
No 220
>PRK06526 transposase; Provisional
Probab=97.55 E-value=6.3e-05 Score=54.46 Aligned_cols=111 Identities=13% Similarity=0.094 Sum_probs=65.0
Q ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 22344320488732777436799999984267543321012346554210024331125555322111001234466714
Q gi|254780916|r 157 RKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGT 236 (482)
Q Consensus 157 ~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gt 236 (482)
+.......+|+|.|++||||+++|-+|-..--+++.+-.-+.|..+-.++..+ +. .|........+..++ -
T Consensus 92 ~~fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~a----~~---~g~~~~~~~~l~~~d--L 162 (254)
T PRK06526 92 LDFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAA----HH---AGRLQDELVKLGRIP--L 162 (254)
T ss_pred CCHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHH----HH---CCCHHHHHHHHHCCC--E
T ss_conf 71776588789989999868999999999999869967998779999999998----85---580999999851368--7
Q ss_pred EEECCCCHHHHHHH--HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 75166420018899--9888877642001123553212343156521433211
Q gi|254780916|r 237 IVLEEPDALPLAVQ--GRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLP 287 (482)
Q Consensus 237 l~l~ei~~L~~~~Q--~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~ 287 (482)
|+|||++..|.+.. .-|+.++.++ +.+ . -+|-+||.+..+
T Consensus 163 LIiDe~g~~~~~~~~a~~lf~li~~R-ye~-------~---S~IiTSn~~~~~ 204 (254)
T PRK06526 163 LIVDEVGYIPFEAEAANLFFQLVSSR-YER-------A---SLIVTSNKPFGR 204 (254)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHH-HCC-------C---CEEEECCCCHHH
T ss_conf 76502136447889999999999999-745-------8---867665898668
No 221
>KOG1969 consensus
Probab=97.55 E-value=0.0022 Score=43.50 Aligned_cols=179 Identities=17% Similarity=0.256 Sum_probs=94.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCHHHHHCCCC--CCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 48873277743679999998426754332101234655-42100243311255--5532211100123446671475166
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMI-DQDKIEKFLFGDVD--LQTKNSAQFLGKFIEANGGTIVLEE 241 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~-~~~~~e~~lFG~~~--~~~~~~~~~~g~~~~a~~Gtl~l~e 241 (482)
=.|++|++|-||+++|+.|-..+.. .-+.||.+.- +...++..+-+-.. .+.+|.+ +--+|++||
T Consensus 328 ilLL~GppGlGKTTLAHViAkqaGY---sVvEINASDeRt~~~v~~kI~~avq~~s~l~ads---------rP~CLViDE 395 (877)
T KOG1969 328 ILLLCGPPGLGKTTLAHVIAKQAGY---SVVEINASDERTAPMVKEKIENAVQNHSVLDADS---------RPVCLVIDE 395 (877)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC---EEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCC---------CCCEEEEEC
T ss_conf 6875368878724799999986285---4887325554347889999999886411225688---------863599842
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCC---CC------CCCE-EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42001889998888776420011235532---12------3431-56521433211111123337999886543344677
Q gi|254780916|r 242 PDALPLAVQGRIYNFIETGKIEFFDSRGA---IR------LDVR-LIFLTEKNLLPQVKSHVFRKDLYYRISVFLINIST 311 (482)
Q Consensus 242 i~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~---~~------~~~R-iIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPp 311 (482)
|+--|...=.-++..+....-.-.|.... .+ .=.| |||.+|-=....... +|. ..-+...+||
T Consensus 396 IDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~--Lr~-----~A~ii~f~~p 468 (877)
T KOG1969 396 IDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRP--LRP-----FAEIIAFVPP 468 (877)
T ss_pred CCCCCHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCHHHHH--CCC-----CEEEEEECCC
T ss_conf 468728999999999974161421686632034555304654587789864755533331--021-----0489995699
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 87744222255667776410112233332111110001223389868999999999987438
Q gi|254780916|r 312 LRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLK 373 (482)
Q Consensus 312 LReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~ 373 (482)
.-.|--+- |+..|...|+ ..+..++..|..|. -+.||-=-|.++.+.....
T Consensus 469 ~~s~Lv~R-------L~~IC~rE~m---r~d~~aL~~L~el~-~~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969 469 SQSRLVER-------LNEICHRENM---RADSKALNALCELT-QNDIRSCINTLQFLASNVD 519 (877)
T ss_pred CHHHHHHH-------HHHHHHHHCC---CCCHHHHHHHHHHH-CCHHHHHHHHHHHHHHHCC
T ss_conf 76689999-------9999764157---78878999999986-1309888889999997044
No 222
>KOG0736 consensus
Probab=97.52 E-value=7.9e-05 Score=53.74 Aligned_cols=120 Identities=21% Similarity=0.249 Sum_probs=65.3
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC---CCCEEE
Q ss_conf 32048873277743679999998426754332101234655421002433112555532211100123446---671475
Q gi|254780916|r 162 CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEA---NGGTIV 238 (482)
Q Consensus 162 ~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a---~~Gtl~ 238 (482)
-.+-||+.|++||||+++|+++-..- +-.|+.|-. ++++. .--|+. ..+..-.|++| .--.+|
T Consensus 704 kRSGILLYGPPGTGKTLlAKAVATEc---sL~FlSVKG----PELLN-MYVGqS------E~NVR~VFerAR~A~PCVIF 769 (953)
T KOG0736 704 KRSGILLYGPPGTGKTLLAKAVATEC---SLNFLSVKG----PELLN-MYVGQS------EENVREVFERARSAAPCVIF 769 (953)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC---EEEEEEECC----HHHHH-HHHCCH------HHHHHHHHHHHHCCCCEEEE
T ss_conf 13505887799985579999987543---036785058----89988-774301------88899999985446974998
Q ss_pred ECCCCHHHHH---------HHHHHHH-HHHHHHCCCCCCCCCCCCCCEEEEECCCC-C--CCCCCHHHHHHHHH
Q ss_conf 1664200188---------9998888-77642001123553212343156521433-2--11111123337999
Q gi|254780916|r 239 LEEPDALPLA---------VQGRIYN-FIETGKIEFFDSRGAIRLDVRLIFLTEKN-L--LPQVKSHVFRKDLY 299 (482)
Q Consensus 239 l~ei~~L~~~---------~Q~~Ll~-~l~~~~~~~~g~~~~~~~~~RiIa~t~~~-L--~~~~~~g~fr~dLy 299 (482)
+|||+.|.+. +-.|... +|.+= -|-+..-.-++=||.|||++ | ..+..-|+|.+=+|
T Consensus 770 FDELDSlAP~RG~sGDSGGVMDRVVSQLLAEL----Dgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvy 839 (953)
T KOG0736 770 FDELDSLAPNRGRSGDSGGVMDRVVSQLLAEL----DGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVY 839 (953)
T ss_pred ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH----HCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCEEEE
T ss_conf 31212327567887886540899999999986----26667888865998258885545765538876552488
No 223
>PRK12377 putative replication protein; Provisional
Probab=97.49 E-value=6.9e-05 Score=54.18 Aligned_cols=146 Identities=15% Similarity=0.156 Sum_probs=78.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC----CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 1111111222222222222222234----432048873277743679999998426754332101234655421002433
Q gi|254780916|r 136 HCALDSLIAVSPAMIQVVDLARKAG----DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFL 211 (482)
Q Consensus 136 ~~~~~~LiG~S~~m~~v~~~i~~~a----~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~l 211 (482)
+..|+.+.-+++..+....++..++ ....++++.|.+||||+++|-+|-..--+....-.-+.++ +++ ..|
T Consensus 70 ~~~f~ny~~~~~~~~~a~~~a~~~~~~F~~~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~~----dLv-~~L 144 (248)
T PRK12377 70 KCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP----DVM-SRL 144 (248)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH----HHH-HHH
T ss_conf 386345645787899999999999998731886089989999878899999999999879969998899----999-999
Q ss_pred HCC-CCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHH--HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 112-555532211100123446671475166420018899--98888776420011235532123431565214332111
Q gi|254780916|r 212 FGD-VDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQ--GRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQ 288 (482)
Q Consensus 212 FG~-~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q--~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~ 288 (482)
... .++.+. ....-.+. .-.-|+|||++..|.+.+ ..|..++..+ ++.. ++ +|.+||.+..+.
T Consensus 145 ~~a~~~g~~~--~k~l~~l~--~~dLLIIDElG~~~~s~~~~~llfqlI~~R-y~~~---ks------~IiTTNL~f~ew 210 (248)
T PRK12377 145 HESYDNGQSG--EKFLQELC--KVDLLVLDEIGIQRETKNEQVVLNQIIDRR-TASM---RS------VGMLTNLNHEAM 210 (248)
T ss_pred HHHHHCCCCH--HHHHHHHH--CCCEEEEHHCCCCCCCHHHHHHHHHHHHHH-HHCC---CC------EEEECCCCHHHH
T ss_conf 9999848509--99999973--389898600057889867999999999999-8557---98------689758997799
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 11123337999886
Q gi|254780916|r 289 VKSHVFRKDLYYRI 302 (482)
Q Consensus 289 ~~~g~fr~dLy~rL 302 (482)
-+ .|-+..+.||
T Consensus 211 ~~--ilgdailDRL 222 (248)
T PRK12377 211 ST--LLGERVMDRM 222 (248)
T ss_pred HH--HHHHHHHHHH
T ss_conf 88--8759999999
No 224
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.46 E-value=0.00025 Score=50.17 Aligned_cols=123 Identities=15% Similarity=0.174 Sum_probs=63.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC----CCC-----------------CCCCCCCCCC
Q ss_conf 2222222222222222344320488732777436799999984267----543-----------------3210123465
Q gi|254780916|r 143 IAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGK----RAF-----------------FPFFIVNCGM 201 (482)
Q Consensus 143 iG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~----r~~-----------------~~fi~v~c~~ 201 (482)
++..+....+...+..-......+|+.|++|+||+.+|.++=..-. ... -.|+.+|-+.
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~ 83 (325)
T COG0470 4 VPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSD 83 (325)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCC
T ss_conf 33235899999999865888761003799999789999999999658664334552002244432025688659977321
Q ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC
Q ss_conf 54210024331125555322111001234466714751664200188999888877642001123553212343156521
Q gi|254780916|r 202 IDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLT 281 (482)
Q Consensus 202 ~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t 281 (482)
.....+.-+.-. .+....... + .....-.+++||++.|....|..|++.+++. +.+.++|..|
T Consensus 84 ~~~~~i~~~~vr---~~~~~~~~~-~--~~~~~kviiidead~mt~~A~nallk~lEep-----------~~~~~~il~~ 146 (325)
T COG0470 84 LRKIDIIVEQVR---ELAEFLSES-P--LEGGYKVVIIDEADKLTEDAANALLKTLEEP-----------PKNTRFILIT 146 (325)
T ss_pred CCCCCCHHHHHH---HHHHHCCCC-C--CCCCCEEEEEECCCCCCHHHHHHHHHHCCCC-----------CCCEEEEEEE
T ss_conf 333300699999---999860446-5--6677269997320326988887675433248-----------8871699974
Q ss_pred C
Q ss_conf 4
Q gi|254780916|r 282 E 282 (482)
Q Consensus 282 ~ 282 (482)
+
T Consensus 147 n 147 (325)
T COG0470 147 N 147 (325)
T ss_pred C
T ss_conf 9
No 225
>KOG0732 consensus
Probab=97.46 E-value=7.3e-05 Score=54.00 Aligned_cols=173 Identities=16% Similarity=0.156 Sum_probs=90.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC---CEEEEC
Q ss_conf 04887327774367999999842675433210123465542100243311255553221110012344667---147516
Q gi|254780916|r 164 IPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANG---GTIVLE 240 (482)
Q Consensus 164 ~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~---Gtl~l~ 240 (482)
.-||..|++||||+++||++-..-.+.+..+-.. ...-. -.-+.-+|+. ..+-.=+|++|.. -.+|+|
T Consensus 300 rgvL~~GppGTGkTl~araLa~~~s~~~~kisff-mrkga--D~lskwvgEa------ERqlrllFeeA~k~qPSIIffd 370 (1080)
T KOG0732 300 RGVLFHGPPGTGKTLMARALAAACSRGNRKISFF-MRKGA--DCLSKWVGEA------ERQLRLLFEEAQKTQPSIIFFD 370 (1080)
T ss_pred CCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHH-HHCCC--HHHCCCCCCH------HHHHHHHHHHHHCCCCEEEECC
T ss_conf 6323028998725688886665405411020244-31484--4332544757------7889988988744485177305
Q ss_pred CCCHHH-----HHHHHH------HHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC---CCCCCHHHHHHHHHHHHHHH-
Q ss_conf 642001-----889998------888776420011235532123431565214332---11111123337999886543-
Q gi|254780916|r 241 EPDALP-----LAVQGR------IYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNL---LPQVKSHVFRKDLYYRISVF- 305 (482)
Q Consensus 241 ei~~L~-----~~~Q~~------Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L---~~~~~~g~fr~dLy~rL~~~- 305 (482)
||+-|. ...|.+ ||-++ + .-+-.-.|.+|.+||+.- ..+..-|+|..++|+-|...
T Consensus 371 eIdGlapvrSskqEqih~SIvSTLLaLm-d--------GldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ 441 (1080)
T KOG0732 371 EIDGLAPVRSSKQEQIHASIVSTLLALM-D--------GLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVD 441 (1080)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHC-C--------CCCCCCCEEEECCCCCCCCCCHHHCCCCCCCEEEEEECCCHH
T ss_conf 5566465653667774456777788760-4--------777778658971567833246544288666525750378667
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCCCCCCCCCCCCCCCCCCC
Q ss_conf -34467787744222255667776410112----233332111110001223389
Q gi|254780916|r 306 -LINISTLRSRSEDIPWLVHFFLQSFCTKN----AIKQISISDKALSLLTKYPWI 355 (482)
Q Consensus 306 -~i~iPpLReR~eDI~~L~~~fl~~~~~~~----~~~~~~ls~~a~~~L~~y~WP 355 (482)
.-++=-++-|+-. +++..+++..++... |.+.+.+..+|.=...+-.+|
T Consensus 442 ar~~Il~Ihtrkw~-~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~P 495 (1080)
T KOG0732 442 ARAKILDIHTRKWE-PPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFP 495 (1080)
T ss_pred HHHHHHHHHCCCCC-CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 88899987515777-8877789999988623400578998888875543045658
No 226
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.46 E-value=0.00013 Score=52.12 Aligned_cols=143 Identities=13% Similarity=0.243 Sum_probs=85.7
Q ss_pred CCCCC--CCCCCC----CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC
Q ss_conf 22222--222222----222223443204887327774367999999842675433210123465542100243311255
Q gi|254780916|r 143 IAVSP--AMIQVV----DLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVD 216 (482)
Q Consensus 143 iG~S~--~m~~v~----~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~ 216 (482)
.|.|| -|..++ +.+........++|+.|.+||||+++|.+|-+.--.++...+-+....+-+. +.+.-|...
T Consensus 157 ~~~sprenm~~i~~~~~~fi~~F~~~~~nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~ta~~L~~~-l~~~~~~~~- 234 (330)
T PRK06835 157 EPISPRENMENILEKCLNFIKNFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYRTSDELIEN-LREIRFNND- 234 (330)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH-HHHHHCCCC-
T ss_conf 898989999999999999987247888866988999998899999999999987994999629999999-999754576-
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCH--HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 5532211100123446671475166420--01889998888776420011235532123431565214332111111233
Q gi|254780916|r 217 LQTKNSAQFLGKFIEANGGTIVLEEPDA--LPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVF 294 (482)
Q Consensus 217 ~~~~~~~~~~g~~~~a~~Gtl~l~ei~~--L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~f 294 (482)
+........+..++ -|+||+++. .+......|+.++.++.-. .+ -.|.+||-+++++.+ .+
T Consensus 235 ---~~~~~~~~~l~~~D--LLIIDDLG~E~~t~~~~~~Lf~iIN~R~~~----~k------~tIITTNl~~~eL~~--~y 297 (330)
T PRK06835 235 ---NDAPELEDLLINCD--LLIIDDLGTESITEFSKTELFNLINKRLLM----NK------KMIISTNLSLEELLK--TY 297 (330)
T ss_pred ---CCHHHHHHHHHHCC--EEEEECCCCCCCCHHHHHHHHHHHHHHHHC----CC------CEEEECCCCHHHHHH--HH
T ss_conf ---44899999996189--899721034558868999999999999867----99------979988999899999--87
Q ss_pred HHHHHHHHHH
Q ss_conf 3799988654
Q gi|254780916|r 295 RKDLYYRISV 304 (482)
Q Consensus 295 r~dLy~rL~~ 304 (482)
.+-.|-||-.
T Consensus 298 ~eRi~SRi~~ 307 (330)
T PRK06835 298 SERIASRLLG 307 (330)
T ss_pred HHHHHHHHHH
T ss_conf 4899999981
No 227
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00037 Score=49.02 Aligned_cols=202 Identities=18% Similarity=0.211 Sum_probs=107.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCC-CCCCC-CCCCCCCCCCCC-CCHHHHHCCC-C-CCCCCCCCC----CCCCCCCCCC
Q ss_conf 488732777436799999984267-54332-101234655421-0024331125-5-553221110----0123446671
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIHESGK-RAFFP-FFIVNCGMIDQD-KIEKFLFGDV-D-LQTKNSAQF----LGKFIEANGG 235 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH~~s~-r~~~~-fi~v~c~~~~~~-~~e~~lFG~~-~-~~~~~~~~~----~g~~~~a~~G 235 (482)
+++|.|.+||||+.+++.+-..-. -+... ++.|||-.++.. .+-+.++-.. + ..+|..... .-..-...++
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~ 123 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGK 123 (366)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 07998899987328999999999733156757999513078787999999998268997676326899999997774187
Q ss_pred E--EEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4--75166420018899988887764200112355321234315652143321111112333799988654334467787
Q gi|254780916|r 236 T--IVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLR 313 (482)
Q Consensus 236 t--l~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLR 313 (482)
| +.|||++.|-...|.-|..++... ....+.+=+|+.+|.. .. ...|.+.+--+|....|..||=-
T Consensus 124 ~~IvvLDEid~L~~~~~~~LY~L~r~~--------~~~~~~v~vi~i~n~~--~~--~~~ld~rv~s~l~~~~I~F~pY~ 191 (366)
T COG1474 124 TVIVILDEVDALVDKDGEVLYSLLRAP--------GENKVKVSIIAVSNDD--KF--LDYLDPRVKSSLGPSEIVFPPYT 191 (366)
T ss_pred EEEEEECCHHHHHCCCCCHHHHEECCC--------CCCCEEEEEEEEECCH--HH--HHHHHHHHHHCCCCCEEEECCCC
T ss_conf 599997647654154641455111247--------7675379999973548--89--99875667650687635528989
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHCC---CCCCCHHHHHHH
Q ss_conf 7442222556677764101122333321111100012--23389868999999999987438---981068895454
Q gi|254780916|r 314 SRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLT--KYPWIDNVQELKNILLRAVIGLK---DSHLTEDRFVLL 385 (482)
Q Consensus 314 eR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~--~y~WPGNvREL~n~i~r~~i~~~---~~~i~~~~~~~~ 385 (482)
.- .|.+-.-++. +.+.....++++++++.. ...=-|..|---.+++++.-.+. .+.++.+++...
T Consensus 192 a~-----el~~Il~~R~--~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a 261 (366)
T COG1474 192 AE-----ELYDILRERV--EEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREA 261 (366)
T ss_pred HH-----HHHHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 89-----9999999999--8540468748039999999887618647760899999999865407885370047889
No 228
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=97.43 E-value=0.0001 Score=52.93 Aligned_cols=122 Identities=16% Similarity=0.259 Sum_probs=75.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHH----HHHHCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 211111111222222222222222234432048873277743679999----9984267543321012346554210024
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSR----FIHESGKRAFFPFFIVNCGMIDQDKIEK 209 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~----~iH~~s~r~~~~fi~v~c~~~~~~~~e~ 209 (482)
..+-..++|||+-..+++..+-+||=-+.| | |..||+|+||+.+|. .|-+.+ .+|+.|-.+
T Consensus 202 A~~GkiDPLIGRE~EleRtiQvLCRR~KNN-P-l~VGEPGVGKTAI~EGLA~~I~~~~-------------kvPe~Lkn~ 266 (774)
T TIGR02639 202 AKNGKIDPLIGREDELERTIQVLCRRKKNN-P-LLVGEPGVGKTAIVEGLAQRIAEGQ-------------KVPEVLKNA 266 (774)
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHCCCCCCC-C-CEECCCCCCHHHHHHHHHHHHHCCC-------------CCCHHHCCC
T ss_conf 860887873456688742333203456788-7-2044888644899999999864156-------------467002478
Q ss_pred HHH---------C--CCCCCCCCCCCCCCCCCCCCCC-EEEECCCCHH---------HHHHHHHHHH-HHHHHHCCCCCC
Q ss_conf 331---------1--2555532211100123446671-4751664200---------1889998888-776420011235
Q gi|254780916|r 210 FLF---------G--DVDLQTKNSAQFLGKFIEANGG-TIVLEEPDAL---------PLAVQGRIYN-FIETGKIEFFDS 267 (482)
Q Consensus 210 ~lF---------G--~~~~~~~~~~~~~g~~~~a~~G-tl~l~ei~~L---------~~~~Q~~Ll~-~l~~~~~~~~g~ 267 (482)
.+| | +++-|-.-..+.+--+++..+- .||+||||.+ +++. ..||. +|.+|.+
T Consensus 267 ~IY~LDmG~LLAGTKYRGDFE~RLK~V~~Ei~~~~~anILFIDEIHTIVGAGATSGGsmDA-SNLLKPaL~~G~i----- 340 (774)
T TIGR02639 267 KIYSLDMGTLLAGTKYRGDFEERLKAVVSEIEKEPNANILFIDEIHTIVGAGATSGGSMDA-SNLLKPALASGKI----- 340 (774)
T ss_pred CEEEECHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCCCHHHHH-HHHHHHHHHCCCE-----
T ss_conf 3454043456410245424789999999998528999546641101033178787515524-4321125307877-----
Q ss_pred CCCCCCCCEEEEECCCC
Q ss_conf 53212343156521433
Q gi|254780916|r 268 RGAIRLDVRLIFLTEKN 284 (482)
Q Consensus 268 ~~~~~~~~RiIa~t~~~ 284 (482)
|.|-||+..
T Consensus 341 --------RCIGsTTy~ 349 (774)
T TIGR02639 341 --------RCIGSTTYE 349 (774)
T ss_pred --------EEECCCCHH
T ss_conf --------862265248
No 229
>KOG0739 consensus
Probab=97.38 E-value=0.00014 Score=52.00 Aligned_cols=123 Identities=20% Similarity=0.262 Sum_probs=71.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC---CCEEEEC
Q ss_conf 0488732777436799999984267543321012346554210024331125555322111001234466---7147516
Q gi|254780916|r 164 IPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEAN---GGTIVLE 240 (482)
Q Consensus 164 ~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~---~Gtl~l~ 240 (482)
.-+|+.|++||||..+|+++-.. ++..|..|..+.+ .|.-.|+.. .-...+|+.|. -..+|+|
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATE---AnSTFFSvSSSDL-----vSKWmGESE------kLVknLFemARe~kPSIIFiD 232 (439)
T KOG0739 167 RGILLYGPPGTGKSYLAKAVATE---ANSTFFSVSSSDL-----VSKWMGESE------KLVKNLFEMARENKPSIIFID 232 (439)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH---CCCCEEEEEHHHH-----HHHHHCCHH------HHHHHHHHHHHHCCCCEEEEE
T ss_conf 25788679997577999998741---4770687301788-----998732179------999999999873499479863
Q ss_pred CCCHHHH-----------HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6420018-----------8999888877642001123553212343156521433--21111112333799988654334
Q gi|254780916|r 241 EPDALPL-----------AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKN--LLPQVKSHVFRKDLYYRISVFLI 307 (482)
Q Consensus 241 ei~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~--L~~~~~~g~fr~dLy~rL~~~~i 307 (482)
||+.|.- .....+|-.+| -||-+.. -+-+..+||.+ |+..+.. +|-+..| |
T Consensus 233 EiDslcg~r~enEseasRRIKTEfLVQMq-----GVG~d~~---gvLVLgATNiPw~LDsAIRR-RFekRIY-------I 296 (439)
T KOG0739 233 EIDSLCGSRSENESEASRRIKTEFLVQMQ-----GVGNDND---GVLVLGATNIPWVLDSAIRR-RFEKRIY-------I 296 (439)
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHH-----CCCCCCC---CEEEEECCCCCHHHHHHHHH-HHHCCEE-------C
T ss_conf 44443268877711777777778887640-----6665888---64897237884367799998-7650230-------1
Q ss_pred HHHHHHHHH
Q ss_conf 467787744
Q gi|254780916|r 308 NISTLRSRS 316 (482)
Q Consensus 308 ~iPpLReR~ 316 (482)
-+|-...|.
T Consensus 297 PLPe~~AR~ 305 (439)
T KOG0739 297 PLPEAHARA 305 (439)
T ss_pred CCCCHHHHH
T ss_conf 087378765
No 230
>KOG0729 consensus
Probab=97.36 E-value=0.00019 Score=51.12 Aligned_cols=213 Identities=15% Similarity=0.199 Sum_probs=111.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 22211111111222222222222222234-----------4320488732777436799999984267543321012346
Q gi|254780916|r 132 QENEHCALDSLIAVSPAMIQVVDLARKAG-----------DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCG 200 (482)
Q Consensus 132 ~~~~~~~~~~LiG~S~~m~~v~~~i~~~a-----------~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~ 200 (482)
++......+++-|.-..+.++++.++--- .-..-||+.|++||||+++||++-+ |.+.-||.|-.+
T Consensus 169 EekPDvTY~DvGGCKeqIEklREVVE~PlL~PErfv~LGIdPPKGvllyGPPGtGKTL~ARAVAN---RTdAcFIRViGS 245 (435)
T KOG0729 169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN---RTDACFIRVIGS 245 (435)
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHC---CCCCEEEEEHHH
T ss_conf 12798630345366999999999884325588888752789987337868999861089998745---667458763118
Q ss_pred CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC---EEEECCCCHH-----------HHHHHHHHHHHHHH-HHCCCC
Q ss_conf 55421002433112555532211100123446671---4751664200-----------18899988887764-200112
Q gi|254780916|r 201 MIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGG---TIVLEEPDAL-----------PLAVQGRIYNFIET-GKIEFF 265 (482)
Q Consensus 201 ~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~G---tl~l~ei~~L-----------~~~~Q~~Ll~~l~~-~~~~~~ 265 (482)
.+-.. ..|+ ||.- ..-+|+.|..- .+|+|||+.. ..++|.-.|.++.. .-|.|-
T Consensus 246 ELVQK-----YvGE-----GARM-VRElFeMAr~KKACiiFFDEiDAiGGaRFDDg~ggDNEVQRTMLEli~QLDGFDpR 314 (435)
T KOG0729 246 ELVQK-----YVGE-----GARM-VRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR 314 (435)
T ss_pred HHHHH-----HHHH-----HHHH-HHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999-----8624-----6899-99999985236527998410102267203578887279999999999860377888
Q ss_pred CCCCCCCCCCEEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 3553212343156521433--2-111111233379998865433446778774422225566777641011223333211
Q gi|254780916|r 266 DSRGAIRLDVRLIFLTEKN--L-LPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISIS 342 (482)
Q Consensus 266 g~~~~~~~~~RiIa~t~~~--L-~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls 342 (482)
| |..+..+||++ | ..++.-|++.. -+.+-+|-|.-|. |.+.-+++..+.. +.+-
T Consensus 315 G-------NIKVlmATNRPdtLDpALlRPGRlDR-------KVEF~LPDlegR~--------~I~kIHaksMsve-rdIR 371 (435)
T KOG0729 315 G-------NIKVLMATNRPDTLDPALLRPGRLDR-------KVEFGLPDLEGRT--------HIFKIHAKSMSVE-RDIR 371 (435)
T ss_pred C-------CEEEEEECCCCCCCCHHHCCCCCCCC-------CEECCCCCCCCCC--------EEEEEECCCCCCC-CCHH
T ss_conf 8-------75898634898876876628764231-------1210587623551--------2577741114423-2216
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHH---HCCCCCCCHHHHHH
Q ss_conf 1110001223389868999999999987---43898106889545
Q gi|254780916|r 343 DKALSLLTKYPWIDNVQELKNILLRAVI---GLKDSHLTEDRFVL 384 (482)
Q Consensus 343 ~~a~~~L~~y~WPGNvREL~n~i~r~~i---~~~~~~i~~~~~~~ 384 (482)
-+.+..|..-. --.|++++|-.+-+ .+...+.++.|+..
T Consensus 372 ~eLlarLCpns---TGAeiRSVCtEAGMfAIraRRkvaTEKDFL~ 413 (435)
T KOG0729 372 FELLARLCPNS---TGAEIRSVCTEAGMFAIRARRKVATEKDFLD 413 (435)
T ss_pred HHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998658897---4257888887743788887762200888999
No 231
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=97.36 E-value=0.00025 Score=50.17 Aligned_cols=111 Identities=20% Similarity=0.240 Sum_probs=61.9
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 23443204887327774367999999842675433210123465542100243311255553221110012344667147
Q gi|254780916|r 158 KAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTI 237 (482)
Q Consensus 158 ~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl 237 (482)
..-....+|+++|++||||+++|-+|=..--+.+....-+.+. ++++..-....+ +...+....+..+ -.|
T Consensus 42 ~~i~~~~Nlll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~~~----~L~~~l~~~~~~---~~~~~~l~~~~~~--dlL 112 (178)
T pfam01695 42 DWIEQAENLLLLGPPGVGKTHLACALGHQACRAGYSVLFTRTP----DLVEQLKRARGD---GRLARTLQRLAKA--DLL 112 (178)
T ss_pred CCHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECH----HHHHHHHHHHHC---CCHHHHHHHHHCC--CEE
T ss_conf 7421587689989999878999999999999869859999616----799999987526---7499999996258--978
Q ss_pred EECCCCHHHH--HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 5166420018--89998888776420011235532123431565214332111
Q gi|254780916|r 238 VLEEPDALPL--AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQ 288 (482)
Q Consensus 238 ~l~ei~~L~~--~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~ 288 (482)
+||+++..+. .....|+.++..+ +.+ + -+|.+||.++.+.
T Consensus 113 IiDDlG~~~~s~~~~~~lf~li~~R-ye~----~------stIiTSN~~~~~W 154 (178)
T pfam01695 113 ILDDIGYLPLSQEAAHLLFELISDR-YER----R------STILTSNLPFGEW 154 (178)
T ss_pred EEEHHCCCCCCHHHHHHHHHHHHHH-HCC----C------CEEEECCCCHHHH
T ss_conf 8720016568989999999999999-756----8------8687768997899
No 232
>PRK09183 transposase/IS protein; Provisional
Probab=97.34 E-value=0.00013 Score=52.16 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=61.8
Q ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 223443204887327774367999999842675433--21012346554210024331125555322111001-234466
Q gi|254780916|r 157 RKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFF--PFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLG-KFIEAN 233 (482)
Q Consensus 157 ~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~--~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g-~~~~a~ 233 (482)
+..-....+|+|.|++||||+++|-+|=..--+.+. -|++ + .++++..--.+.+ |....... .+..
T Consensus 95 ~~fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~--~----~~L~~~L~~a~~~---~~~~~~l~r~l~~-- 163 (258)
T PRK09183 95 LSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT--A----ADLLLQLSTAQRQ---GRYKTTLQRGVMA-- 163 (258)
T ss_pred CCHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE--H----HHHHHHHHHHHHC---CCHHHHHHHHHCC--
T ss_conf 816655886799899998689999999999998799399978--9----9999999999876---8599999987434--
Q ss_pred CCEEEECCCCHHHHHHHHH--HHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 7147516642001889998--88877642001123553212343156521433211
Q gi|254780916|r 234 GGTIVLEEPDALPLAVQGR--IYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLP 287 (482)
Q Consensus 234 ~Gtl~l~ei~~L~~~~Q~~--Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~ 287 (482)
-.-|+|||++.+|.+.+.. |+.++.++ +.+ . -+|.+||.+..+
T Consensus 164 ~dLLIiDdlG~~~~~~~~~~~lfeli~~R-ye~-------~---S~IiTSn~~~~~ 208 (258)
T PRK09183 164 PRLLIIDEIGYLPFSQEEANLFFQVIAKR-YEK-------G---AMILTSNLPFGQ 208 (258)
T ss_pred CCEEEEHHHHCCCCCHHHHHHHHHHHHHH-HCC-------C---CEEEECCCCHHH
T ss_conf 65144313315468888999999999998-576-------7---789988999789
No 233
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=97.28 E-value=0.00019 Score=51.12 Aligned_cols=128 Identities=11% Similarity=0.045 Sum_probs=81.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 111111112222222222222222344--320488732777436799999984267543321012346554210024331
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGD--CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLF 212 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~--~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lF 212 (482)
....++.|+|-......+.+...+... ...+||+.|..||||+.+.++++..-...+-.+|.|....+..= ..|+
T Consensus 23 d~v~l~~L~Gie~Qk~~l~~NT~~F~~G~pAnnvLLwG~RGtGKSSlVKall~~~~~~gLrlIEv~k~~L~~L---p~i~ 99 (248)
T pfam05673 23 DPVDLDDLVGIDRQKEALLRNTEQFLAGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVDKDDLGDL---PDIV 99 (248)
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHCCH---HHHH
T ss_conf 9899889349399999999999999808986136767689898889999999986314956999878887219---9999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 125555322111001234466714751664200188999888877642001123553212343156521433
Q gi|254780916|r 213 GDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKN 284 (482)
Q Consensus 213 G~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~ 284 (482)
.. ...+.-+| .||+|.+.==+.+..=|.|+.+-+| |-...+.|++|-|+||+-
T Consensus 100 ~~-------l~~~~~kF------IiF~DDLSFe~~d~~yk~LKs~LeG------~l~~~p~NvliYaTSNRR 152 (248)
T pfam05673 100 DL-------LRGRPYRF------ILFCDDLSFEEGESSYKALKSVLEG------GLEARPDNVLIYATSNRR 152 (248)
T ss_pred HH-------HHCCCCCE------EEEECCCCCCCCCHHHHHHHHHHCC------CCCCCCCEEEEEEECCCH
T ss_conf 99-------96499757------9996355767897369999999657------644688738999842700
No 234
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.21 E-value=0.00079 Score=46.70 Aligned_cols=206 Identities=16% Similarity=0.195 Sum_probs=112.1
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC---CC---CCCCCCCCCCCCC
Q ss_conf 34432048873277743679999998426754332101234655421002433112555---53---2211100123446
Q gi|254780916|r 159 AGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDL---QT---KNSAQFLGKFIEA 232 (482)
Q Consensus 159 ~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~---~~---~~~~~~~g~~~~a 232 (482)
++....-+.++||.||||+++.|++-+.-.....--+.++--.++...+-..+|-.-.. .+ -......++.+..
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~ 126 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALV 126 (269)
T ss_pred HHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 75178559997447776369999999855788517998357630178899999998405832006889999999999999
Q ss_pred CC----CEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 67----14751664200188999888877642001123553212343156521433211111123337999886543344
Q gi|254780916|r 233 NG----GTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLIN 308 (482)
Q Consensus 233 ~~----Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~ 308 (482)
.. -.++.||-++|..+. -.-||.+.+..- ++.++ .+++-.-..-|........+++ +=||.- +.|+
T Consensus 127 ~~g~r~v~l~vdEah~L~~~~-le~Lrll~nl~~---~~~~~----l~ivL~Gqp~L~~~lr~~~l~e-~~~R~~-ir~~ 196 (269)
T COG3267 127 KKGKRPVVLMVDEAHDLNDSA-LEALRLLTNLEE---DSSKL----LSIVLIGQPKLRPRLRLPVLRE-LEQRID-IRIE 196 (269)
T ss_pred HHCCCCEEEEEHHHHHHCHHH-HHHHHHHHHHCC---CCCCC----EEEEECCCCCCCHHHCHHHHHH-HHHEEE-EEEE
T ss_conf 817887378501676617548-999999886203---46672----1145507801143544288985-431677-8995
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 677877442222556677764101122333321111100012--233898689999999999874389810688
Q gi|254780916|r 309 ISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLT--KYPWIDNVQELKNILLRAVIGLKDSHLTED 380 (482)
Q Consensus 309 iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~--~y~WPGNvREL~n~i~r~~i~~~~~~i~~~ 380 (482)
+||+-+= .+...+.|-++.. +.+..-|+++|+..+. ..-||+=|.++--..--++..+.++-++.+
T Consensus 197 l~P~~~~--~t~~yl~~~Le~a----~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~Al~~a~~a~~~~v~~a 264 (269)
T COG3267 197 LPPLTEA--ETGLYLRHRLEGA----GLPEPLFSDDALLLIHEASQGIPRLINNLATLALDAAYSAGEDGVSEA 264 (269)
T ss_pred CCCCCHH--HHHHHHHHHHHCC----CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 3886747--8999999998505----899666770578999998525548999988999999987399751256
No 235
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.00043 Score=48.54 Aligned_cols=107 Identities=15% Similarity=0.149 Sum_probs=64.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHC----CCCCCCC-CCCCCCCCCCCCCCHHHHH
Q ss_conf 1111122222222222222223443204887327774367999999842----6754332-1012346554210024331
Q gi|254780916|r 138 ALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES----GKRAFFP-FFIVNCGMIDQDKIEKFLF 212 (482)
Q Consensus 138 ~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~----s~r~~~~-fi~v~c~~~~~~~~e~~lF 212 (482)
.|+.++|+....+.+...+.+ .......|++|+.|+||+.+|+.+=.. ....+.| ++.++-
T Consensus 2 ~f~~iiGq~~i~~~L~~~i~~-~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D~~~~~~------------- 67 (313)
T PRK05564 2 SFRTIIGHENIKNRIDNSIIK-GKFSHASLIVGEDGIGKSILAKEIANKILGKSEQREYVDIIEYKP------------- 67 (313)
T ss_pred CHHHCCCHHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEC-------------
T ss_conf 832326829999999999987-998750432799985099999999999828997788986588633-------------
Q ss_pred CCCCCCCCCCCCCCCCCC-------CCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 125555322111001234-------466714751664200188999888877642
Q gi|254780916|r 213 GDVDLQTKNSAQFLGKFI-------EANGGTIVLEEPDALPLAVQGRIYNFIETG 260 (482)
Q Consensus 213 G~~~~~~~~~~~~~g~~~-------~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~ 260 (482)
..+..-+-..-| .+.+ ++..-..++|+.+.|+.+.+..||..|||.
T Consensus 68 -~~~~~I~vd~IR-~l~~~~~~~p~~g~~KV~II~~ae~m~~~AaNALLKtLEEP 120 (313)
T PRK05564 68 -INKKSIGVDDIR-NIIEEVNKKPYEGDKKVIIIYKSEKMTEQAQNAFLKTIEEP 120 (313)
T ss_pred -CCCCCCCHHHHH-HHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHCCCCC
T ss_conf -225699989999-99999840862589569998077775899999984550368
No 236
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.16 E-value=0.0015 Score=44.75 Aligned_cols=212 Identities=17% Similarity=0.226 Sum_probs=118.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC----CCCCCCCC-CCCCCCCCC----
Q ss_conf 111111112222222222222222344320488732777436799999984267----54332101-234655421----
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGK----RAFFPFFI-VNCGMIDQD---- 205 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~----r~~~~fi~-v~c~~~~~~---- 205 (482)
....|+.++|+...-..+...+. ......--|+.|+.||||+.+||.+-..-. -...|... .+|-++...
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~-~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~D 89 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALE-NGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLID 89 (515)
T ss_pred CCCCHHHHCCCHHHHHHHHHHHH-HCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 83007776364899999999998-08423336513777767104999999995688987777225316668651488641
Q ss_pred CCHHHHHCCCCC-CCCCCCCCCCCCC-------CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
Q ss_conf 002433112555-5322111001234-------46671475166420018899988887764200112355321234315
Q gi|254780916|r 206 KIEKFLFGDVDL-QTKNSAQFLGKFI-------EANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRL 277 (482)
Q Consensus 206 ~~e~~lFG~~~~-~~~~~~~~~g~~~-------~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 277 (482)
++| -++ +....++-.-+.+ +++--..++||+|-|+......||..||+. +.+|-+
T Consensus 90 viE------iDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP-----------P~hV~F 152 (515)
T COG2812 90 VIE------IDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP-----------PSHVKF 152 (515)
T ss_pred CHH------HHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCC-----------CCCEEE
T ss_conf 011------364445486799999987246886666418998318764378888875111368-----------667489
Q ss_pred EEECCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 65214332----11111123337999886543344677877442222556677764101122333321111100012233
Q gi|254780916|r 278 IFLTEKNL----LPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYP 353 (482)
Q Consensus 278 Ia~t~~~L----~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~ 353 (482)
|.+|+..- .-+....+| .+.-++ .++|... ++.++.+.+ ..++++|+..+.. .
T Consensus 153 IlATTe~~Kip~TIlSRcq~f------~fkri~---------~~~I~~~----L~~i~~~E~---I~~e~~aL~~ia~-~ 209 (515)
T COG2812 153 ILATTEPQKIPNTILSRCQRF------DFKRLD---------LEEIAKH----LAAILDKEG---INIEEDALSLIAR-A 209 (515)
T ss_pred EEECCCCCCCCHHHHHCCCCC------CCCCCC---------HHHHHHH----HHHHHHHCC---CCCCHHHHHHHHH-H
T ss_conf 985388676840455212202------225799---------9999999----999987448---7547999999999-8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
Q ss_conf 89868999999999987438981068895454212
Q gi|254780916|r 354 WIDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSR 388 (482)
Q Consensus 354 WPGNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~ 388 (482)
--|-.|+--+.+.++...+. +.|+.+.+...++.
T Consensus 210 a~Gs~RDalslLDq~i~~~~-~~It~~~v~~~lG~ 243 (515)
T COG2812 210 AEGSLRDALSLLDQAIAFGE-GEITLESVRDMLGL 243 (515)
T ss_pred CCCCHHHHHHHHHHHHHCCC-CCCCHHHHHHHHCC
T ss_conf 28974567778999997067-76569999999688
No 237
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.06 E-value=0.0012 Score=45.48 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=18.7
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHH
Q ss_conf 2222222222223443204887327774367999
Q gi|254780916|r 147 PAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLS 180 (482)
Q Consensus 147 ~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A 180 (482)
..|.++...+.+.-.+..|||+.||+|+||+++.
T Consensus 1157 ~~m~rl~~lv~~Cl~~kepvlLVgetgcgktt~c 1190 (4600)
T COG5271 1157 EPMCRLERLVGKCLVTKEPVLLVGETGCGKTTGC 1190 (4600)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH
T ss_conf 4302336687776523685489961475435789
No 238
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.0019 Score=44.03 Aligned_cols=136 Identities=13% Similarity=0.156 Sum_probs=71.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHH----HCCCCCCCCCC--CCC--C---C----C
Q ss_conf 111111222222222222222234432048873277743679999998----42675433210--123--4---6----5
Q gi|254780916|r 137 CALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIH----ESGKRAFFPFF--IVN--C---G----M 201 (482)
Q Consensus 137 ~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH----~~s~r~~~~fi--~v~--c---~----~ 201 (482)
..+..++|+..+.+.+.+.+. -.....-.|++|+.|+||.++|+.+= ........|-- ..+ | . +
T Consensus 20 r~~~~liGq~~~~~~L~~a~~-~gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~~r~i~~g 98 (352)
T PRK09112 20 SENNRLFGHEEARAFLAQAYR-EGRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPLWRQIAQG 98 (352)
T ss_pred CCHHHHCCHHHHHHHHHHHHH-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 446462786999999999998-4996524653589980899999999999866998666865567888787789999748
Q ss_pred CCCCCCH-HHHHCCCCC-C-CC---CCCCCC-CCCC--CCCCC--EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 5421002-433112555-5-32---211100-1234--46671--47516642001889998888776420011235532
Q gi|254780916|r 202 IDQDKIE-KFLFGDVDL-Q-TK---NSAQFL-GKFI--EANGG--TIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGA 270 (482)
Q Consensus 202 ~~~~~~e-~~lFG~~~~-~-~~---~~~~~~-g~~~--~a~~G--tl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~ 270 (482)
-..++++ ..-|-.+.+ + +. ...+.. ..|. ...|| .+++|+.+.|+...+..||+.||+.
T Consensus 99 ~hpdl~~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~aaNALLK~LEEP---------- 168 (352)
T PRK09112 99 AHPNLLHLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP---------- 168 (352)
T ss_pred CCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCC----------
T ss_conf 9999565534322021454335777999999998454886688069998187874699999999985348----------
Q ss_pred CCCCCEEEEECCCC
Q ss_conf 12343156521433
Q gi|254780916|r 271 IRLDVRLIFLTEKN 284 (482)
Q Consensus 271 ~~~~~RiIa~t~~~ 284 (482)
+.++.+|..|+..
T Consensus 169 -p~~~~fiLit~~~ 181 (352)
T PRK09112 169 -PARALFILISHSS 181 (352)
T ss_pred -CCCEEEEEEECCH
T ss_conf -9874899886997
No 239
>KOG0744 consensus
Probab=97.03 E-value=0.0011 Score=45.63 Aligned_cols=87 Identities=16% Similarity=0.219 Sum_probs=52.1
Q ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHH------CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 22344320488732777436799999984------267543321012346554210024331125555322111001234
Q gi|254780916|r 157 RKAGDCAIPIMIQGEFGVGKKRLSRFIHE------SGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFI 230 (482)
Q Consensus 157 ~~~a~~~~~vli~Ge~GtGK~~~A~~iH~------~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~ 230 (482)
..+...+.=||+.|++||||+.+.+++-+ .+....+.+|.+||.++ =|.-|++.+---.-..+.+--+.
T Consensus 171 tnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsL-----FSKWFsESgKlV~kmF~kI~ELv 245 (423)
T KOG0744 171 TNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSL-----FSKWFSESGKLVAKMFQKIQELV 245 (423)
T ss_pred CCEEEEEEEEEEECCCCCCHHHHHHHHHHHHEEEECCCCCCCEEEEEEHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7446641489985799988227999998751465237644406999704678-----89887121138999999999997
Q ss_pred CCCCC--EEEECCCCHHHHH
Q ss_conf 46671--4751664200188
Q gi|254780916|r 231 EANGG--TIVLEEPDALPLA 248 (482)
Q Consensus 231 ~a~~G--tl~l~ei~~L~~~ 248 (482)
+-.|- .+.+||++.|...
T Consensus 246 ~d~~~lVfvLIDEVESLa~a 265 (423)
T KOG0744 246 EDRGNLVFVLIDEVESLAAA 265 (423)
T ss_pred HCCCCEEEEEEHHHHHHHHH
T ss_conf 17896899980787888999
No 240
>KOG0726 consensus
Probab=96.99 E-value=0.0019 Score=44.01 Aligned_cols=139 Identities=17% Similarity=0.214 Sum_probs=77.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-----------CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 1111111222222222222222234-----------43204887327774367999999842675433210123465542
Q gi|254780916|r 136 HCALDSLIAVSPAMIQVVDLARKAG-----------DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQ 204 (482)
Q Consensus 136 ~~~~~~LiG~S~~m~~v~~~i~~~a-----------~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~ 204 (482)
...+..+-|-...++++.+.++--- .-..-|.+.|++||||+++|+++-+.. ...|+.|-.+.
T Consensus 181 ~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT---SATFlRvvGse--- 254 (440)
T KOG0726 181 QETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT---SATFLRVVGSE--- 254 (440)
T ss_pred HHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCC---CHHHHHHHHHH---
T ss_conf 011134425789999999863388898789997288999705886799975368888772455---21245565089---
Q ss_pred CCCHHHHHCCCCCCCCCCCCCCCCCCC---CCCCEEEECCCCHHH-----------HHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 100243311255553221110012344---667147516642001-----------889998888776420011235532
Q gi|254780916|r 205 DKIEKFLFGDVDLQTKNSAQFLGKFIE---ANGGTIVLEEPDALP-----------LAVQGRIYNFIETGKIEFFDSRGA 270 (482)
Q Consensus 205 ~~~e~~lFG~~~~~~~~~~~~~g~~~~---a~~Gtl~l~ei~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~ 270 (482)
++. .-.|.- + .-..-+|.. -.-..+|+|||+... .+.|.-+|.+|.. +++...
T Consensus 255 -LiQ-kylGdG-----p-klvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQ-----ldGFds 321 (440)
T KOG0726 255 -LIQ-KYLGDG-----P-KLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ-----LDGFDS 321 (440)
T ss_pred -HHH-HHHCCC-----H-HHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH-----CCCCCC
T ss_conf -999-873655-----1-999999988875298269864001104521347885078999999999874-----268665
Q ss_pred CCCCCEEEEECCCC--C-CCCCCHHHH
Q ss_conf 12343156521433--2-111111233
Q gi|254780916|r 271 IRLDVRLIFLTEKN--L-LPQVKSHVF 294 (482)
Q Consensus 271 ~~~~~RiIa~t~~~--L-~~~~~~g~f 294 (482)
.-|+.+|-+||+= | ..++.-|+.
T Consensus 322 -rgDvKvimATnrie~LDPaLiRPGrI 347 (440)
T KOG0726 322 -RGDVKVIMATNRIETLDPALIRPGRI 347 (440)
T ss_pred -CCCEEEEEECCCCCCCCHHHCCCCCC
T ss_conf -67758997416534467755278754
No 241
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00023 Score=50.46 Aligned_cols=125 Identities=14% Similarity=0.202 Sum_probs=67.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCC-------CCCCCCCCCCCCCC
Q ss_conf 11111111222222222222222234432048873277743679999998426754332-------10123465542100
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFP-------FFIVNCGMIDQDKI 207 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~-------fi~v~c~~~~~~~~ 207 (482)
.....++.||....++++.+-+.|= +.-+-++.||+|+||+.++..+-..=-..+-| .+.+|.+++
T Consensus 165 r~gklDPvIGRd~EI~r~iqIL~RR--~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L----- 237 (786)
T COG0542 165 REGKLDPVIGRDEEIRRTIQILSRR--TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL----- 237 (786)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHCC--CCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEECHHHH-----
T ss_conf 6589887737479999999998356--889984766898889999989999974699997875887997148767-----
Q ss_pred HHHHHCCCCCCCCCCCCCC-C---CCCCCCCCEEEECCCCHHHH---------HHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 2433112555532211100-1---23446671475166420018---------899988887764200112355321234
Q gi|254780916|r 208 EKFLFGDVDLQTKNSAQFL-G---KFIEANGGTIVLEEPDALPL---------AVQGRIYNFIETGKIEFFDSRGAIRLD 274 (482)
Q Consensus 208 e~~lFG~~~~~~~~~~~~~-g---~~~~a~~Gtl~l~ei~~L~~---------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 274 (482)
.=|-+ +-|....|. + -++++.+-.||+||||.+=- +.-.-|--+|.-| .
T Consensus 238 ---vAGak--yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~g~a~DAaNiLKPaLARG-------------e 299 (786)
T COG0542 238 ---VAGAK--YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-------------E 299 (786)
T ss_pred ---HCCCC--CCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCC-------------C
T ss_conf ---46465--35738999999999985179849998235540577766666512566467787458-------------7
Q ss_pred CEEEEECCCC
Q ss_conf 3156521433
Q gi|254780916|r 275 VRLIFLTEKN 284 (482)
Q Consensus 275 ~RiIa~t~~~ 284 (482)
.|.|.+|+.+
T Consensus 300 L~~IGATT~~ 309 (786)
T COG0542 300 LRCIGATTLD 309 (786)
T ss_pred EEEEEECCHH
T ss_conf 3799735589
No 242
>KOG0742 consensus
Probab=96.95 E-value=0.006 Score=40.49 Aligned_cols=133 Identities=20% Similarity=0.234 Sum_probs=69.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--HHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 4887327774367999999842675433210123465542100--24331125555322111001234466714751664
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKI--EKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEP 242 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~--e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei 242 (482)
+||+.|++||||+++||-|-..|.--..-..-=|.+-+-.+-+ .-+||.- +...+.|+ -||+||-
T Consensus 386 NilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDW------akkS~rGL-------llFIDEA 452 (630)
T KOG0742 386 NILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDW------AKKSRRGL-------LLFIDEA 452 (630)
T ss_pred HEEEECCCCCCHHHHHHHHHHHCCCCEEHHCCCCCCCCHHHHHHHHHHHHHH------HHHCCCCE-------EEEEHHH
T ss_conf 0032479998604999999885287410013787555217889999998788------75156644-------9986116
Q ss_pred CH---------HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC--CCCCCCHHHHHHHHHHHHH-HHHHHHH
Q ss_conf 20---------0188999888877642001123553212343156521433--2111111233379998865-4334467
Q gi|254780916|r 243 DA---------LPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKN--LLPQVKSHVFRKDLYYRIS-VFLINIS 310 (482)
Q Consensus 243 ~~---------L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~--L~~~~~~g~fr~dLy~rL~-~~~i~iP 310 (482)
+. ||.. |..-|++|- +|.|.+ .-++-++.+||++ |+..|. .|++ ++.+.+|
T Consensus 453 DAFLceRnktymSEa-qRsaLNAlL----fRTGdq---SrdivLvlAtNrpgdlDsAV~---------DRide~veFpLP 515 (630)
T KOG0742 453 DAFLCERNKTYMSEA-QRSALNALL----FRTGDQ---SRDIVLVLATNRPGDLDSAVN---------DRIDEVVEFPLP 515 (630)
T ss_pred HHHHHHHCCCCCCHH-HHHHHHHHH----HHCCCC---CCCEEEEEECCCCCCHHHHHH---------HHHHHHEECCCC
T ss_conf 789987520102588-999998898----762565---542689960588321016787---------655541306899
Q ss_pred HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 787744222255667776410
Q gi|254780916|r 311 TLRSRSEDIPWLVHFFLQSFC 331 (482)
Q Consensus 311 pLReR~eDI~~L~~~fl~~~~ 331 (482)
---||-- |+..|++++-
T Consensus 516 GeEERfk----ll~lYlnkyi 532 (630)
T KOG0742 516 GEEERFK----LLNLYLNKYI 532 (630)
T ss_pred CHHHHHH----HHHHHHHHHH
T ss_conf 7789999----9999999981
No 243
>KOG0728 consensus
Probab=96.95 E-value=0.002 Score=43.86 Aligned_cols=168 Identities=17% Similarity=0.215 Sum_probs=91.4
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC---CCCEEE
Q ss_conf 32048873277743679999998426754332101234655421002433112555532211100123446---671475
Q gi|254780916|r 162 CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEA---NGGTIV 238 (482)
Q Consensus 162 ~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a---~~Gtl~ 238 (482)
...-||+.|++||||+++||+..+++. ..||.|..+.+- ....|+. +.- ...+|-.| .-..+|
T Consensus 180 QPKGvlLygppgtGktLlaraVahht~---c~firvsgselv-----qk~igeg-----srm-vrelfvmarehapsiif 245 (404)
T KOG0728 180 QPKGVLLYGPPGTGKTLLARAVAHHTD---CTFIRVSGSELV-----QKYIGEG-----SRM-VRELFVMAREHAPSIIF 245 (404)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCC---EEEEEECHHHHH-----HHHHHHH-----HHH-HHHHHHHHHHCCCCEEE
T ss_conf 876048846999756299999875414---079996449999-----9985013-----899-99999998750882675
Q ss_pred ECCCCHH-----------HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC-C--CCCCCHHHHHHHHHHHHHH
Q ss_conf 1664200-----------188999888877642001123553212343156521433-2--1111112333799988654
Q gi|254780916|r 239 LEEPDAL-----------PLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKN-L--LPQVKSHVFRKDLYYRISV 304 (482)
Q Consensus 239 l~ei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~-L--~~~~~~g~fr~dLy~rL~~ 304 (482)
.|||+.. .-++|.-.|.+|..- ++.+ -+-|..+|-+||+= . ..+..-|+...
T Consensus 246 mdeidsigs~r~e~~~ggdsevqrtmlellnql-----dgfe-atknikvimatnridild~allrpgridr-------- 311 (404)
T KOG0728 246 MDEIDSIGSSRVESGSGGDSEVQRTMLELLNQL-----DGFE-ATKNIKVIMATNRIDILDPALLRPGRIDR-------- 311 (404)
T ss_pred EHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-----CCCC-CCCCEEEEEECCCCCCCCHHHCCCCCCCC--------
T ss_conf 000012123434578986389999999999740-----2400-03662699841642224686638775455--------
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHH
Q ss_conf 3344677877-4422225566777641011223333211111000122338986-8999999999987
Q gi|254780916|r 305 FLINISTLRS-RSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDN-VQELKNILLRAVI 370 (482)
Q Consensus 305 ~~i~iPpLRe-R~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGN-vREL~n~i~r~~i 370 (482)
.|+.||=.| -+-|| |.-++++.+.. +++.-.-++ -..||- -.|++.+|-.+-.
T Consensus 312 -kiefp~p~e~ar~~i-------lkihsrkmnl~-rgi~l~kia----ekm~gasgaevk~vcteagm 366 (404)
T KOG0728 312 -KIEFPPPNEEARLDI-------LKIHSRKMNLT-RGINLRKIA----EKMPGASGAEVKGVCTEAGM 366 (404)
T ss_pred -CCCCCCCCHHHHHHH-------HHHHHHHHHHH-CCCCHHHHH----HHCCCCCCCHHHHHHHHHHH
T ss_conf -564899877888789-------98855530133-066789999----86789863025434335457
No 244
>KOG0740 consensus
Probab=96.90 E-value=0.00031 Score=49.59 Aligned_cols=132 Identities=23% Similarity=0.259 Sum_probs=71.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-HHHHHCCCCCCCCCCCCCCCCCCCC---CCCEEEEC
Q ss_conf 4887327774367999999842675433210123465542100-2433112555532211100123446---67147516
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKI-EKFLFGDVDLQTKNSAQFLGKFIEA---NGGTIVLE 240 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~-e~~lFG~~~~~~~~~~~~~g~~~~a---~~Gtl~l~ 240 (482)
.+|+.|++||||+++|++|-..|. .-|..|..+++..--+ |+|-++| .+|.-| .-+.+|+|
T Consensus 188 glLLfGPpgtGKtmL~~aiAsE~~---atff~iSassLtsK~~Ge~eK~vr------------alf~vAr~~qPsvifid 252 (428)
T KOG0740 188 GLLLFGPPGTGKTMLAKAIATESG---ATFFNISASSLTSKYVGESEKLVR------------ALFKVARSLQPSVIFID 252 (428)
T ss_pred HHHEECCCCCCHHHHHHHHHHHHC---CEEEECCHHHHHHHCCCHHHHHHH------------HHHHHHHHCCCEEEEEC
T ss_conf 112005898844799999986206---657630688865324670778999------------99999871397089840
Q ss_pred CCCHH-----------HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 64200-----------188999888877642001123553212343156521433--21111112333799988654334
Q gi|254780916|r 241 EPDAL-----------PLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKN--LLPQVKSHVFRKDLYYRISVFLI 307 (482)
Q Consensus 241 ei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~--L~~~~~~g~fr~dLy~rL~~~~i 307 (482)
||+.+ +...+.. +|-+. .|.+..-.-.+.+|++||.+ +++.+.. +|..-+| |
T Consensus 253 Eidslls~Rs~~e~e~srr~kte---fLiq~----~~~~s~~~drvlvigaTN~P~e~Dea~~R-rf~kr~y-------i 317 (428)
T KOG0740 253 EIDSLLSKRSDNEHESSRRLKTE---FLLQF----DGKNSAPDDRVLVIGATNRPWELDEAARR-RFVKRLY-------I 317 (428)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHH---HHHHH----CCCCCCCCCEEEEEECCCCCHHHHHHHHH-HHCCEEE-------E
T ss_conf 25678863687545445556557---77654----04457888707998158883677888888-7103155-------3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46778774422225566777641
Q gi|254780916|r 308 NISTLRSRSEDIPWLVHFFLQSF 330 (482)
Q Consensus 308 ~iPpLReR~eDI~~L~~~fl~~~ 330 (482)
.+|-=-.|.. ++.++|.+.
T Consensus 318 plPd~etr~~----~~~~ll~~~ 336 (428)
T KOG0740 318 PLPDYETRSL----LWKQLLKEQ 336 (428)
T ss_pred CCCCHHHHHH----HHHHHHHHC
T ss_conf 5988789999----999999768
No 245
>KOG0477 consensus
Probab=96.89 E-value=0.0011 Score=45.71 Aligned_cols=113 Identities=16% Similarity=0.183 Sum_probs=72.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCC---CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 32048873277743679999998426754332101234---655421002433112555532211100123446671475
Q gi|254780916|r 162 CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNC---GMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIV 238 (482)
Q Consensus 162 ~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c---~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~ 238 (482)
-+.+||+.|.+||||.-+-+++-+.|+|+ -|.+=-. .+++... +++.-++...---|.+-.|++|..+
T Consensus 481 GDinvLL~GDPGTaKSQFLKY~eK~s~RA--V~tTGqGASavGLTa~v-------~KdPvtrEWTLEaGALVLADkGvCl 551 (854)
T KOG0477 481 GDINVLLLGDPGTAKSQFLKYAEKTSPRA--VFTTGQGASAVGLTAYV-------RKDPVTREWTLEAGALVLADKGVCL 551 (854)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCE--EEECCCCCCCCCEEEEE-------EECCCCCEEEECCCEEEECCCCEEE
T ss_conf 44028984699822899999998627531--68506775433326887-------5178653036516728972685377
Q ss_pred ECCCCHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCEEEEECCC
Q ss_conf 16642001889998888776420011--2355321234315652143
Q gi|254780916|r 239 LEEPDALPLAVQGRIYNFIETGKIEF--FDSRGAIRLDVRLIFLTEK 283 (482)
Q Consensus 239 l~ei~~L~~~~Q~~Ll~~l~~~~~~~--~g~~~~~~~~~RiIa~t~~ 283 (482)
+||-+.|.-.-.+.+..+++.+.+.- -|--......|-+||++|-
T Consensus 552 IDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanP 598 (854)
T KOG0477 552 IDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANP 598 (854)
T ss_pred EEHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEECCC
T ss_conf 41211204011015999987512014466689988755443000277
No 246
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.82 E-value=0.003 Score=42.57 Aligned_cols=135 Identities=16% Similarity=0.185 Sum_probs=71.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH--CCCCCCCCCCCCCCC---CCCCC-----CC
Q ss_conf 111112222222222222222344320488732777436799999984--267543321012346---55421-----00
Q gi|254780916|r 138 ALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHE--SGKRAFFPFFIVNCG---MIDQD-----KI 207 (482)
Q Consensus 138 ~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~--~s~r~~~~fi~v~c~---~~~~~-----~~ 207 (482)
.+..++|+..+.+.+.+.+.. .......|++|+.|+||..+|+.+=. .+......+-...|. .++.+ .+
T Consensus 15 ~~~~liGqe~~~~~L~~a~~~-grl~HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~~p~~r~i 93 (363)
T PRK07471 15 ETTALFGHAAAEAALLDAYRS-GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPDHPVARRI 93 (363)
T ss_pred CCCCCCCHHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHH
T ss_conf 827316819999999999985-9976458767999818899999999998579997777767870531258777289999
Q ss_pred HHH----HHCCCCCCCC-----------CCCCCC-CCCC--CCCC--CEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 243----3112555532-----------211100-1234--4667--147516642001889998888776420011235
Q gi|254780916|r 208 EKF----LFGDVDLQTK-----------NSAQFL-GKFI--EANG--GTIVLEEPDALPLAVQGRIYNFIETGKIEFFDS 267 (482)
Q Consensus 208 e~~----lFG~~~~~~~-----------~~~~~~-g~~~--~a~~--Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~ 267 (482)
.+. ++.-...... +..+.. ..+. -..| -.+++|+.+.|....+..||..|||.
T Consensus 94 ~~~~hpdl~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~aaNALLK~LEEP------- 166 (363)
T PRK07471 94 AAGAHGGLLTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP------- 166 (363)
T ss_pred HCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCC-------
T ss_conf 5269998466762001133321244539999999999724852489669998687873889999999972158-------
Q ss_pred CCCCCCCCEEEEECCCC
Q ss_conf 53212343156521433
Q gi|254780916|r 268 RGAIRLDVRLIFLTEKN 284 (482)
Q Consensus 268 ~~~~~~~~RiIa~t~~~ 284 (482)
+.++-+|..|+..
T Consensus 167 ----P~~t~fiLit~~~ 179 (363)
T PRK07471 167 ----PARSLLLLVSHAP 179 (363)
T ss_pred ----CCCEEEEEEECCH
T ss_conf ----9883899863997
No 247
>PRK06921 hypothetical protein; Provisional
Probab=96.82 E-value=0.0022 Score=43.49 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=66.2
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 4320488732777436799999984267-543321012346554210024331125555322111001234466714751
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGK-RAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVL 239 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~-r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l 239 (482)
....++++.|++|+||+++|-+|-..-- +...+-+-++- .+ +|..-+............+.+| --|++
T Consensus 114 ~~~~~l~f~G~~G~GKThLa~aIa~~Ll~~~~~~Vly~~~----~~-----~~~~lk~~~~~~~~~l~~~~~~--dlLII 182 (265)
T PRK06921 114 CRKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF----VE-----GFGDLKDDFDLLEAKLNRMKKV--EVLFI 182 (265)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEH----HH-----HHHHHHHHHHHHHHHHHHHHCC--CEEEE
T ss_conf 7766279972898988999999999999962971999887----99-----9999998888899999986329--99998
Q ss_pred CCC-------CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 664-------200188999888877642001123553212343156521433211111123337999886
Q gi|254780916|r 240 EEP-------DALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRI 302 (482)
Q Consensus 240 ~ei-------~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL 302 (482)
|++ +..+.....++...|..+.. ..+| +|.+|+.++++++. +.+-+.-||
T Consensus 183 DDLfk~~~G~e~~te~~~~~lf~iIN~Ry~----~~kp------tIiSSNl~~~~L~~---i~e~i~SRi 239 (265)
T PRK06921 183 DDLFKPVNGKPRATEWQIEQTYSVVNYRYL----NHKP------ILISSELTIDELLD---IDEALGSRI 239 (265)
T ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHH----CCCC------EEEECCCCHHHHHH---HHHHHHHHH
T ss_conf 221223479878988999999999999997----6999------89986899899987---637988889
No 248
>KOG0730 consensus
Probab=96.81 E-value=0.0008 Score=46.66 Aligned_cols=125 Identities=21% Similarity=0.255 Sum_probs=69.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC----CCEE
Q ss_conf 320488732777436799999984267543321012346554210024331125555322111001234466----7147
Q gi|254780916|r 162 CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEAN----GGTI 237 (482)
Q Consensus 162 ~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~----~Gtl 237 (482)
-...+|..|++||||+.+++++-+... ..|+.+||..+ .+.+-|+.+ ..- .-.|++|. .-++
T Consensus 217 ~prg~Ll~gppg~Gkt~l~~aVa~e~~---a~~~~i~~pel-----i~k~~gEte----~~L--R~~f~~a~k~~~psii 282 (693)
T KOG0730 217 PPRGLLLYGPPGTGKTFLVRAVANEYG---AFLFLINGPEL-----ISKFPGETE----SNL--RKAFAEALKFQVPSII 282 (693)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHC---CEEEECCCHHH-----HHHCCCCHH----HHH--HHHHHHHHCCCCCEEE
T ss_conf 998744438999981899999999737---22574062899-----985246317----789--9999998665998077
Q ss_pred EECCCCHHHH----------HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC--CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 5166420018----------8999888877642001123553212343156521433--211111123337999886543
Q gi|254780916|r 238 VLEEPDALPL----------AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKN--LLPQVKSHVFRKDLYYRISVF 305 (482)
Q Consensus 238 ~l~ei~~L~~----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~--L~~~~~~g~fr~dLy~rL~~~ 305 (482)
|+|||+.+-+ ..-..|+.++.. .+ -..++=+|++|++. |......|+|..++
T Consensus 283 ~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg--------~~-~~~~vivl~atnrp~sld~alRRgRfd~ev------- 346 (693)
T KOG0730 283 FIDELDALCPKREGADDVESRVVSQLLTLLDG--------LK-PDAKVIVLAATNRPDSLDPALRRGRFDREV------- 346 (693)
T ss_pred EHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH--------CC-CCCCEEEEEECCCCCCCCHHHHCCCCCCEE-------
T ss_conf 58767623776433324888999999999852--------76-767469997158855568565247885315-------
Q ss_pred HHHHHHHHHHH
Q ss_conf 34467787744
Q gi|254780916|r 306 LINISTLRSRS 316 (482)
Q Consensus 306 ~i~iPpLReR~ 316 (482)
.|.+|.--+|.
T Consensus 347 ~IgiP~~~~Rl 357 (693)
T KOG0730 347 EIGIPGSDGRL 357 (693)
T ss_pred EECCCCCHHHH
T ss_conf 74489833588
No 249
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=96.80 E-value=0.0019 Score=43.92 Aligned_cols=126 Identities=21% Similarity=0.291 Sum_probs=59.2
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC---CCCEEE
Q ss_conf 32048873277743679999998426754332101234655421002433112555532211100123446---671475
Q gi|254780916|r 162 CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEA---NGGTIV 238 (482)
Q Consensus 162 ~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a---~~Gtl~ 238 (482)
-..-||+.|++||||+++|+++-+. .+..|+.+|... +.|..+|+.. .+-...|++| .-..+|
T Consensus 239 PPkG~ll~GPPGtGktllaka~ane---~~a~f~~inGPe-----imsky~Ge~e------~~lr~if~eaeenaP~iif 304 (980)
T TIGR01243 239 PPKGVLLYGPPGTGKTLLAKAVANE---AGAYFIAINGPE-----IMSKYYGESE------ERLREIFKEAEENAPSIIF 304 (980)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHH---CCCEEEEECCCH-----HHHHHCCCCH------HHHHHHHHHHHHCCCCEEE
T ss_conf 9873587558986178999998753---055178850603-----4433136307------8999999865305870787
Q ss_pred ECCCCHHHHH-------HHHH----HHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC--C-CCCCCHHHHHHHHHHHHHH
Q ss_conf 1664200188-------9998----88877642001123553212343156521433--2-1111112333799988654
Q gi|254780916|r 239 LEEPDALPLA-------VQGR----IYNFIETGKIEFFDSRGAIRLDVRLIFLTEKN--L-LPQVKSHVFRKDLYYRISV 304 (482)
Q Consensus 239 l~ei~~L~~~-------~Q~~----Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~--L-~~~~~~g~fr~dLy~rL~~ 304 (482)
+|||+.+.+. +..+ ||.+++ +-+.+- .+=+|.+||++ + ..+-.-|+|..+
T Consensus 305 ideidaiaPkr~e~~Geve~r~v~qlltlmd--------Glk~rG-~v~viGatnrP~a~dPalrrPGrfdre------- 368 (980)
T TIGR01243 305 IDEIDAIAPKREEVTGEVEKRVVAQLLTLMD--------GLKGRG-KVIVIGATNRPDALDPALRRPGRFDRE------- 368 (980)
T ss_pred EECHHHCCCCCCCHHHHHHHHHHHHHHHHHH--------HHCCCC-EEEEEECCCCCCCCCHHHCCCCCCCCE-------
T ss_conf 4121100764100001688999999999974--------002487-289981468850026224278864433-------
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 3344677877442
Q gi|254780916|r 305 FLINISTLRSRSE 317 (482)
Q Consensus 305 ~~i~iPpLReR~e 317 (482)
+.|.+|-=+.|+|
T Consensus 369 i~~~~Pd~~~r~e 381 (980)
T TIGR01243 369 IEIGVPDKEGRKE 381 (980)
T ss_pred EEECCCCHHHHHH
T ss_conf 5741885456788
No 250
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=96.76 E-value=0.00091 Score=46.25 Aligned_cols=129 Identities=19% Similarity=0.169 Sum_probs=75.2
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 22222222234432048873277743679999998426754332101234655421002433112555532211100123
Q gi|254780916|r 150 IQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKF 229 (482)
Q Consensus 150 ~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~ 229 (482)
.++++.++- .-..-||+.|++||||+++|+++-..|. ..||.|....+ -|.-.|+..- +...---+-
T Consensus 564 ~~~f~k~G~--~PP~Gvll~GPPGtGktllakava~es~---anfi~v~GPe~-----lskWvGese~---~ir~if~~a 630 (980)
T TIGR01243 564 PEVFEKLGI--RPPKGVLLFGPPGTGKTLLAKAVATESG---ANFIAVRGPEI-----LSKWVGESEK---AIREIFRKA 630 (980)
T ss_pred HHHHHHCCC--CCCCCEEEECCCCCCHHHHHHHHHHCCC---CCEEEECCCHH-----HHHHHCHHHH---HHHHHHHHH
T ss_conf 589986078--8997348746898616888887740145---64677407312-----2344032479---999999986
Q ss_pred CCCCCCEEEECCCCHHHHHH---------HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC---CCCCCHHHHHH
Q ss_conf 44667147516642001889---------998888776420011235532123431565214332---11111123337
Q gi|254780916|r 230 IEANGGTIVLEEPDALPLAV---------QGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNL---LPQVKSHVFRK 296 (482)
Q Consensus 230 ~~a~~Gtl~l~ei~~L~~~~---------Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L---~~~~~~g~fr~ 296 (482)
.+|.-..+|+|||+.+.+.- -.++...|- .-+++- ....++=+|++||++- ..++.-|+|..
T Consensus 631 rq~aP~~~f~deidaiaP~rG~~~~~~~vtd~~~nqll----~e~dG~-~~~~~vvvi~atnrPdi~dPallrPGr~dr 704 (980)
T TIGR01243 631 RQAAPAIIFFDEIDAIAPARGASLDEKGVTDRIVNQLL----TELDGL-EELSDVVVIAATNRPDILDPALLRPGRLDR 704 (980)
T ss_pred HHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHH----HHHHCC-CCCCCEEEEEECCCCCCCCCCCCCCCCCCE
T ss_conf 41287378730211105412442100102689999999----864044-343665898615887423610048874121
No 251
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.76 E-value=0.0012 Score=45.33 Aligned_cols=62 Identities=16% Similarity=0.285 Sum_probs=43.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC----CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 111111112222222222222222344----3204887327774367999999842675433210123
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGD----CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVN 198 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~----~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~ 198 (482)
....|+.+.|....+.++......+|. ...=+++.|+.|+||+.+|+.+-..-.+ .|+-++.
T Consensus 53 rY~~F~dffGme~~i~~iV~~~ksAA~g~e~~kqIllL~GPVGsGKSsl~e~LK~glE~--y~~Y~i~ 118 (358)
T pfam08298 53 RYPAFADFFGMEETIERIVNYFRHAAQGLEERKQILYLLGPVGGGKSSLAERLKKLLEL--VPIYALK 118 (358)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC--CCEEEEC
T ss_conf 25542320015999999999999997236721058999778987758999999987205--8648844
No 252
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.74 E-value=0.0021 Score=43.74 Aligned_cols=226 Identities=13% Similarity=0.139 Sum_probs=129.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC---CCCEEEEEECCCCCHHHHHHH----HHHHCCCCC---CCCCCCCCCCCCCCC---
Q ss_conf 1111222222222222222234---432048873277743679999----998426754---332101234655421---
Q gi|254780916|r 139 LDSLIAVSPAMIQVVDLARKAG---DCAIPIMIQGEFGVGKKRLSR----FIHESGKRA---FFPFFIVNCGMIDQD--- 205 (482)
Q Consensus 139 ~~~LiG~S~~m~~v~~~i~~~a---~~~~~vli~Ge~GtGK~~~A~----~iH~~s~r~---~~~fi~v~c~~~~~~--- 205 (482)
.+.+.++-...+.++..++.-- .+..-+.|.|-+||||+...+ .++...... .-.||.||+-.++.-
T Consensus 266 pe~lpcRe~E~~~I~~Fie~~i~q~GtG~cLYISGVPGTGKTATV~eVIr~L~~~~~~~~lp~F~fVEINGMkLt~P~qa 345 (650)
T PTZ00112 266 PEYILGREKEAKEIRTFLETGIKQGGTGQILYISGVPGTGKTATVYMVIKELQNKKLKGQLPWFNLFEINGVNLVHPNAA 345 (650)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEECCCHHHH
T ss_conf 74477707899999999986411688665699978999980036999999999999708999815999736377987889
Q ss_pred --CCHHHHHCCCCCCC-CCCCCCCCCCCCCCC-CEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC
Q ss_conf --00243311255553-221110012344667-14751664200188999888877642001123553212343156521
Q gi|254780916|r 206 --KIEKFLFGDVDLQT-KNSAQFLGKFIEANG-GTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLT 281 (482)
Q Consensus 206 --~~e~~lFG~~~~~~-~~~~~~~g~~~~a~~-Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t 281 (482)
.+=..|+|.+.... .+..--.-.|-.... -.|++||++.|--.-|.-|..+++=. ....+.+=+|+..
T Consensus 346 Y~~L~e~Ltg~k~~~~~~A~~lL~k~F~~~r~p~VlLvDELD~LvTkkQ~VlYNLFdWP--------T~~~SkLIVIaIA 417 (650)
T PTZ00112 346 YRVFYKKLFNKKPPNALNSYKELDKLFNNNRTPSILIVDEADYIVTKTQKVLFTLFDWP--------TKKNSKLILIIIS 417 (650)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHCCCCEEEECCCCC--------CCCCCEEEEEEEE
T ss_conf 99999998489888678999999998268997189997157777636774577736688--------9888707999985
Q ss_pred -CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCCCCH
Q ss_conf -4332111111233379998865433446778774422225566777641011223333211111000122--3389868
Q gi|254780916|r 282 -EKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTK--YPWIDNV 358 (482)
Q Consensus 282 -~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~--y~WPGNv 358 (482)
+-||.+.+. ++ .=-||.-..|..+|-.-. .+..++.+=|+ + ...|+++|+++... ....|..
T Consensus 418 NTMDLPERL~-~R----VsSRLGltRltF~PYt~~--QL~eII~sRL~------~--~~~f~~dAIQl~ARKVAavSGDA 482 (650)
T PTZ00112 418 NTMDLPYKMK-PS----CRSRLAFGRLVFSPYKYQ--QIEKVIKERLE------N--CEIIDHTALQLCARRVTNYSGDM 482 (650)
T ss_pred ECCCCCHHHH-HH----HHHHCCCCEECCCCCCHH--HHHHHHHHHHC------C--CCCCCHHHHHHHHHHHHHHCCHH
T ss_conf 0678606566-66----555228850043998999--99999999862------6--77788789999988887503148
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHC
Q ss_conf 99999999998743898106889545421
Q gi|254780916|r 359 QELKNILLRAVIGLKDSHLTEDRFVLLLS 387 (482)
Q Consensus 359 REL~n~i~r~~i~~~~~~i~~~~~~~~l~ 387 (482)
|-==.+|+||+....+..|+..|+.....
T Consensus 483 RRALdICRRAvE~~~~~ki~~~~i~~a~n 511 (650)
T PTZ00112 483 RKALQICKLAFENKNGGKITPRDMTRASN 511 (650)
T ss_pred HHHHHHHHHHHHHCCCCEEEHHHHHHHHH
T ss_conf 99999999999735687342489999988
No 253
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.70 E-value=0.0022 Score=43.61 Aligned_cols=132 Identities=11% Similarity=0.075 Sum_probs=67.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC---CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 11111222222222222222234---432048873277743679999998426754332101234655421002433112
Q gi|254780916|r 138 ALDSLIAVSPAMIQVVDLARKAG---DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGD 214 (482)
Q Consensus 138 ~~~~LiG~S~~m~~v~~~i~~~a---~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~ 214 (482)
....+-+.+...+..+..+...+ .....+++.|.+||||+++|-+|=..--+++.+..-+.++ +++. +|
T Consensus 77 ~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~----el~~-~L--- 148 (254)
T COG1484 77 EEFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP----DLLS-KL--- 148 (254)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH----HHHH-HH---
T ss_conf 430235885566999999999998732588289989999879999999999999839849998859----9999-99---
Q ss_pred CCCCCCCCCCCCCC-CC-CCCCCEEEECCCCHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 55553221110012-34-466714751664200188--999888877642001123553212343156521433211111
Q gi|254780916|r 215 VDLQTKNSAQFLGK-FI-EANGGTIVLEEPDALPLA--VQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVK 290 (482)
Q Consensus 215 ~~~~~~~~~~~~g~-~~-~a~~Gtl~l~ei~~L~~~--~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~ 290 (482)
+.+... ...... .. ..+---|+||+|+..+.. ...-++.+|....-++ +.|.+||.+..++-.
T Consensus 149 -k~~~~~-~~~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~-----------~~~~tsN~~~~~~~~ 215 (254)
T COG1484 149 -KAAFDE-GRLEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESR-----------SLIITSNLSFGEWDE 215 (254)
T ss_pred -HHHHHC-CCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHC-----------CCCEEECCCHHHHHH
T ss_conf -998745-5268999988752898998236776688155879999999999730-----------542020588278886
No 254
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=96.60 E-value=0.074 Score=32.76 Aligned_cols=267 Identities=14% Similarity=0.115 Sum_probs=127.3
Q ss_pred CCCEEE-EEECCCCCHHHHHHHHHHH-CCC--CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 432048-8732777436799999984-267--543321012346554210024331125555322111001234466714
Q gi|254780916|r 161 DCAIPI-MIQGEFGVGKKRLSRFIHE-SGK--RAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGT 236 (482)
Q Consensus 161 ~~~~~v-li~Ge~GtGK~~~A~~iH~-~s~--r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gt 236 (482)
..=.|| ||.||---=+....+.|-+ ... ..+-.++.++|...+.+.+.+++ +..++|. +.-.
T Consensus 13 k~l~pvyli~G~e~~li~~~~~~i~~~~~~~~~~~~n~~~~d~~~~~~~~l~~~~------------~t~slf~--~krl 78 (336)
T PRK05574 13 KGLAPVYLLYGDEPLLLQEAKDAIRAAARAQGFDERNVFTVDGSETDWDDVLEAC------------QSLPLFS--DRKL 78 (336)
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHH------------CCCCCCC--CCEE
T ss_conf 7898679998586999999999999986077865305899716869999999986------------4899778--9759
Q ss_pred EEECCCCHHHHH----HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH--HHHHHHH
Q ss_conf 751664200188----9998888776420011235532123431565214332111111233379998865--4334467
Q gi|254780916|r 237 IVLEEPDALPLA----VQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRIS--VFLINIS 310 (482)
Q Consensus 237 l~l~ei~~L~~~----~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~--~~~i~iP 310 (482)
+++++...++.. .-..|...+++. +...++ ++..+...+....... .+|--+. +..|...
T Consensus 79 Viv~~~~~~~~k~~~~~l~~l~~~l~~~---------~~~~~l-vli~~~~~~d~~~k~~----k~~k~l~~~~~~i~~~ 144 (336)
T PRK05574 79 VELRLPEGLTGKKGEEALKRLEAYLENP---------LPHTDL-LLLAPLPKLDKRKEKS----AWFKALKKKAVVVEAQ 144 (336)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHCC---------CCCCEE-EEEEECCCCCHHHHHH----HHHHHHHHCEEEEEEC
T ss_conf 9998887665311379999999987079---------999769-9998778633688889----9999998480799806
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
Q ss_conf 78774422225566777641011223333211111000122338986899999999998743898106889545421244
Q gi|254780916|r 311 TLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREG 390 (482)
Q Consensus 311 pLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~~ 390 (482)
++.+ .+++..+..++.+ .|. .++++|.+.|..+ -+||.+.+.|-++.++..+.++.|+.+++........
T Consensus 145 ~~~~--~~l~~~i~~~~~~----~g~---~i~~~a~~~L~~~-~g~dl~~l~~EleKL~ly~~~~~It~~dV~~~v~~~~ 214 (336)
T PRK05574 145 TPKE--AELPQWIQQRLKQ----QGL---RIDAAALQLLAER-VEGNLLALAQEIEKLALLYPDGKITLEDVEEAVPDSA 214 (336)
T ss_pred CCCH--HHHHHHHHHHHHH----CCC---CCCHHHHHHHHHH-HHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
T ss_conf 9998--9999999999998----499---9898999999997-2113999999999999837888878999999861643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHH
Q ss_conf 543223432222223344432100000000112344454325899-9999999999999828727899978489988999
Q gi|254780916|r 391 KKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRL-SDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLY 469 (482)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~ 469 (482)
........+.... ......-.....+.....+. -.....+ ..+.+-+....+...+.+...+|+.|||...-.+
T Consensus 215 ~~~~f~L~dai~~--~~~~~al~~l~~l~~~~~~~---~~il~~l~~~~r~l~~ik~~~~~g~~~~~i~~~l~i~~~~~~ 289 (336)
T PRK05574 215 RFDVFDLVDAILA--GKIARALRILDGLRLEGEEP---IKLLAALQREFRLLLQLKILLQQGYPLQQLFKELRVWPYRRK 289 (336)
T ss_pred CCCHHHHHHHHHC--CCHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHH
T ss_conf 3567999999987--89999999999999779972---999999999999999999998769999999988399999999
Q ss_pred H
Q ss_conf 9
Q gi|254780916|r 470 R 470 (482)
Q Consensus 470 r 470 (482)
.
T Consensus 290 ~ 290 (336)
T PRK05574 290 L 290 (336)
T ss_pred H
T ss_conf 9
No 255
>KOG0652 consensus
Probab=96.60 E-value=0.0051 Score=40.97 Aligned_cols=212 Identities=16% Similarity=0.190 Sum_probs=103.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC----------CCC-CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 2211111111222222222222222----------234-43204887327774367999999842675433210123465
Q gi|254780916|r 133 ENEHCALDSLIAVSPAMIQVVDLAR----------KAG-DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGM 201 (482)
Q Consensus 133 ~~~~~~~~~LiG~S~~m~~v~~~i~----------~~a-~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~ 201 (482)
+......+.+-|-...++++.+.|- .+. .-..-||..|++||||+++||+--.. -+..|..+..-
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaq---T~aTFLKLAgP- 239 (424)
T KOG0652 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQ---TNATFLKLAGP- 239 (424)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHH---CCCHHHHHCCH-
T ss_conf 68743200032578999999988614565687887468889972276579997577999999874---01068873264-
Q ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCCCC---CCCCEEEECCCCHHH-----------HHHHHHHHHHHHHHHCCCCCC
Q ss_conf 542100243311255553221110012344---667147516642001-----------889998888776420011235
Q gi|254780916|r 202 IDQDKIEKFLFGDVDLQTKNSAQFLGKFIE---ANGGTIVLEEPDALP-----------LAVQGRIYNFIETGKIEFFDS 267 (482)
Q Consensus 202 ~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~---a~~Gtl~l~ei~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~ 267 (482)
. +-..+.|.. +.- ....|.. -.--.+|+||++... .++|.-.|.+|..- ++
T Consensus 240 ---Q-LVQMfIGdG-----AkL-VRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQL-----DG 304 (424)
T KOG0652 240 ---Q-LVQMFIGDG-----AKL-VRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL-----DG 304 (424)
T ss_pred ---H-HHHHHHCCH-----HHH-HHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC-----CC
T ss_conf ---7-776653341-----889-99999875334983899730023233436531234389999999999860-----48
Q ss_pred CCCCCCCCEEEEECCCC-C--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCC
Q ss_conf 53212343156521433-2--11111123337999886543344677877442222556677764101122333-32111
Q gi|254780916|r 268 RGAIRLDVRLIFLTEKN-L--LPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQ-ISISD 343 (482)
Q Consensus 268 ~~~~~~~~RiIa~t~~~-L--~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~-~~ls~ 343 (482)
..+ .-++.+||+||+- . ..+..+|++.. -+.+..|.=-.|. -| ++-++++.+... ..|.+
T Consensus 305 Fss-~~~vKviAATNRvDiLDPALlRSGRLDR-------KIEfP~Pne~aRa-rI-------lQIHsRKMnv~~DvNfeE 368 (424)
T KOG0652 305 FSS-DDRVKVIAATNRVDILDPALLRSGRLDR-------KIEFPHPNEEARA-RI-------LQIHSRKMNVSDDVNFEE 368 (424)
T ss_pred CCC-CCCEEEEEECCCCCCCCHHHHHCCCCCC-------CCCCCCCCHHHHH-HH-------HHHHHHCCCCCCCCCHHH
T ss_conf 997-5626788521643434888864466444-------4348899778988-99-------988640057788879899
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHH---CCCCCCCHHHHHH
Q ss_conf 1100012233898689999999999874---3898106889545
Q gi|254780916|r 344 KALSLLTKYPWIDNVQELKNILLRAVIG---LKDSHLTEDRFVL 384 (482)
Q Consensus 344 ~a~~~L~~y~WPGNvREL~n~i~r~~i~---~~~~~i~~~~~~~ 384 (482)
|..-.=-=|-.|++.+|-.+-+. .....++.+|+..
T Consensus 369 -----LaRsTddFNGAQcKAVcVEAGMiALRr~atev~heDfme 407 (424)
T KOG0652 369 -----LARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFME 407 (424)
T ss_pred -----HHHCCCCCCCHHHEEEHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf -----853335667232133005540899864653012788999
No 256
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=96.55 E-value=0.01 Score=38.84 Aligned_cols=220 Identities=13% Similarity=0.179 Sum_probs=104.0
Q ss_pred CCCCCCCC---CCCCCCCCCCCCCCCCE-EEEEECCCCCHHHHHHHHH---HH---CCCCCCCCCCCCCCCCCCCC--CC
Q ss_conf 11122222---22222222222344320-4887327774367999999---84---26754332101234655421--00
Q gi|254780916|r 140 DSLIAVSP---AMIQVVDLARKAGDCAI-PIMIQGEFGVGKKRLSRFI---HE---SGKRAFFPFFIVNCGMIDQD--KI 207 (482)
Q Consensus 140 ~~LiG~S~---~m~~v~~~i~~~a~~~~-~vli~Ge~GtGK~~~A~~i---H~---~s~r~~~~fi~v~c~~~~~~--~~ 207 (482)
+.-||... ++.++-+.+..--.... .+||.|++|.||+++.+-- |. ...+..-|-+.+.+..-|.+ +.
T Consensus 34 ~rWIgY~~A~~~L~~Le~Ll~~P~~~Rmp~lLlvGdsnnGKT~Iv~rF~~~hp~~~d~~~~~~PVl~vq~P~~p~~~~lY 113 (302)
T pfam05621 34 DRWIGYPRAVEALNRLEALYAWPNKQRMPNLLLVGPTNNGKSMIVEKFRRAHPAGSDADQEHIPVLVVQMPSEPSVIRFY 113 (302)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHH
T ss_conf 85327789999999999998468646887558870798878999999999679987866670218999769998868999
Q ss_pred HHHH--HCCCCCCCCCC----CCCCCCCCCCCCCEEEECCCCHH---HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
Q ss_conf 2433--11255553221----11001234466714751664200---188999888877642001123553212343156
Q gi|254780916|r 208 EKFL--FGDVDLQTKNS----AQFLGKFIEANGGTIVLEEPDAL---PLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLI 278 (482)
Q Consensus 208 e~~l--FG~~~~~~~~~----~~~~g~~~~a~~Gtl~l~ei~~L---~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI 278 (482)
.+-| +|..-..++.. .+...+|...+-..|.+||++++ +...|..++.+|.. +|..-.+ =||
T Consensus 114 ~~IL~~l~aP~~~~~~~~~~~~~~~~ll~~~~vrmLIIDEiHnlL~Gs~~~qr~~ln~LK~-----L~Nel~I----piV 184 (302)
T pfam05621 114 VALLAAMGAPLRPRPRLPEMEQLALALLRKVGVRMLVIDELHNVLAGNSVNRREFLNLLRF-----LGNELRI----PLV 184 (302)
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCHHHHHHHHHHHHH-----HHHCCCC----CEE
T ss_conf 9999983787788877899999999999974987899854365604868899999999999-----8636587----869
Q ss_pred EECCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCC-CCCCC
Q ss_conf 521433211111-----12333799988654334467787744222255667776410112233-332111110-00122
Q gi|254780916|r 279 FLTEKNLLPQVK-----SHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIK-QISISDKAL-SLLTK 351 (482)
Q Consensus 279 a~t~~~L~~~~~-----~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~-~~~ls~~a~-~~L~~ 351 (482)
+.-..+--..+. +++|. ++.+|.-+. .+|...|...|-.. .-.. +-.++...+ +.+..
T Consensus 185 ~vGt~eA~~ai~tD~QlasRF~----------~~~Lp~W~~-d~ef~~LL~sfe~~----LPL~~~S~L~~~~~a~~I~~ 249 (302)
T pfam05621 185 GVGTRDAYLAIRSDDQLENRFE----------PMLLPPWEA-NDDCCSLLASFAAS----LPLRRPSPIATLDMARYLLT 249 (302)
T ss_pred EECCHHHHHHHHCCHHHHHHCC----------CCCCCCCCC-CCHHHHHHHHHHHH----CCCCCCCCCCCHHHHHHHHH
T ss_conf 9531999999706888885058----------611688889-80899999999986----88877768888999999999
Q ss_pred CCCCCCHHHHHHHHHHHH---HHCCCCCCCHHHHHH
Q ss_conf 338986899999999998---743898106889545
Q gi|254780916|r 352 YPWIDNVQELKNILLRAV---IGLKDSHLTEDRFVL 384 (482)
Q Consensus 352 y~WPGNvREL~n~i~r~~---i~~~~~~i~~~~~~~ 384 (482)
.. -||+.|+.+++..++ +.+....|+.+.+..
T Consensus 250 ~S-eG~iGei~~Ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T pfam05621 250 RS-EGTIGELAHLLMAAAIAAVESGEEAINHRTLSM 284 (302)
T ss_pred HC-CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 85-992879999999999999847871008999966
No 257
>KOG0741 consensus
Probab=96.54 E-value=0.0039 Score=41.76 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=10.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 04887327774367999999842
Q gi|254780916|r 164 IPIMIQGEFGVGKKRLSRFIHES 186 (482)
Q Consensus 164 ~~vli~Ge~GtGK~~~A~~iH~~ 186 (482)
.-+|+.|++||||+++||-|-..
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkM 279 (744)
T KOG0741 257 KGILLYGPPGTGKTLIARQIGKM 279 (744)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 35788779998701899998787
No 258
>COG2508 Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.52 E-value=0.0098 Score=38.97 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=29.9
Q ss_pred HHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH----CCCCCC
Q ss_conf 9999828727899978489988999999981----888144
Q gi|254780916|r 445 LAMKLYRAQMSEVARRLGIGRSTLYRKIREY----NIEVDS 481 (482)
Q Consensus 445 ~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~~----gi~~d~ 481 (482)
.++-.++||.++||+.|.|.||||.+||+|. |++.++
T Consensus 360 ~~yl~~~~ni~~tAk~L~iHRNTL~YRi~kieEltg~dL~~ 400 (421)
T COG2508 360 RAYLKNNGNISATAKRLFVHRNTLRYRLKKIEELTGIDLKD 400 (421)
T ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99998489799999983745423999999999994879877
No 259
>TIGR01815 TrpE-clade3 anthranilate synthase; InterPro: IPR010112 This entry represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.; GO: 0004049 anthranilate synthase activity, 0000162 tryptophan biosynthetic process.
Probab=96.51 E-value=0.0071 Score=39.96 Aligned_cols=104 Identities=14% Similarity=0.153 Sum_probs=75.2
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH-HHHHHHCCCCCEEEEECCCCC-CCHHHHHHHHHHH-CCCCCEE
Q ss_conf 528838998699899999999999889889998937-999986089989999785469-8889999999985-7898399
Q gi|254780916|r 8 DRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS-DLSTISKIQVNVIFLSLINCE-DDKENILKNIVDK-IPIVPII 84 (482)
Q Consensus 8 ~~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~-al~~l~~~~~dlillD~~mP~-~dGlell~~i~~~-~p~ipvI 84 (482)
..-++||+||.|.++...|+.+|++-|-.|+|...+ +-+++.+.+||+|+|.= =|| -.-+++-..|++. .-++||=
T Consensus 522 q~G~~iLLvDHeDSFVHTLAnY~RqTGAsVTTlRh~~ae~~fd~~rPDLVVLSP-GPGrP~dFdv~~Ti~aa~ar~lP~F 600 (726)
T TIGR01815 522 QEGKRILLVDHEDSFVHTLANYLRQTGASVTTLRHSFAEELFDEERPDLVVLSP-GPGRPKDFDVKETIKAALARDLPVF 600 (726)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCEEEECC-CCCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 258779998547543777788876348755304304789997327998898687-3123875447889999997289857
Q ss_pred EE-ECCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99-268999999988850574322222222222
Q gi|254780916|r 85 VQ-TTQDNIKILNCFLYNRISKFFLNLVSRKQL 116 (482)
Q Consensus 85 ii-T~~~~~~~~~~a~~~g~~d~l~KP~~~~~L 116 (482)
=+ -| .+.++++ +-|.-+-|..|.+=+-=
T Consensus 601 GVCLG---LQg~vEa-fGG~L~vL~~P~HGK~s 629 (726)
T TIGR01815 601 GVCLG---LQGLVEA-FGGELDVLAIPVHGKAS 629 (726)
T ss_pred EEHHH---HHHHHHH-HCCCCCCCCCCCCCCCC
T ss_conf 74134---6899987-46721357888788633
No 260
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.50 E-value=0.0026 Score=43.05 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=66.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-----------CCCCEEEEEECCCCCHHHHHHHHHHHCCCC--CC-CC-CCCCCCCC
Q ss_conf 11111122222222222222223-----------443204887327774367999999842675--43-32-10123465
Q gi|254780916|r 137 CALDSLIAVSPAMIQVVDLARKA-----------GDCAIPIMIQGEFGVGKKRLSRFIHESGKR--AF-FP-FFIVNCGM 201 (482)
Q Consensus 137 ~~~~~LiG~S~~m~~v~~~i~~~-----------a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r--~~-~~-fi~v~c~~ 201 (482)
..|+.++|+-.+.+.++..++.- ......-|+.|+.|+||+.+|+++-..-.= .+ .| -.--+|..
T Consensus 2 ~~f~~ivGQe~v~~~L~~A~~~~R~~~~~~~~~~~~~~HAyLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~~~cg~C~~C~~ 81 (395)
T PRK07940 2 GVWDRLVGQDAVVAELRAAARAARADSAHSAAAGSGMTHAWLFTGPPGSGRSNAARAFAAALQCTDPGVPGCGECRACRT 81 (395)
T ss_pred CCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 97013159299999999999836343443333468766037636899878899999999996699999999987878999
Q ss_pred CCC----CCCHHHHHCCCCCCCCCCCCCCCCC-------CCCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 542----1002433112555532211100123-------4466714751664200188999888877642
Q gi|254780916|r 202 IDQ----DKIEKFLFGDVDLQTKNSAQFLGKF-------IEANGGTIVLEEPDALPLAVQGRIYNFIETG 260 (482)
Q Consensus 202 ~~~----~~~e~~lFG~~~~~~~~~~~~~g~~-------~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~ 260 (482)
+.. |..+ +-. .+.+-...+-..+. .+++.-..++|+.+.|....+..||..|+|.
T Consensus 82 i~~g~hpDv~~---i~p-~~~~i~id~iR~l~~~~~~~p~~~~~kv~ii~~a~~m~~~a~NalLKtLEEP 147 (395)
T PRK07940 82 VLAGTHPDVRV---VVP-EGLSIGVDEVREIVQIAARRPTTGRWRIVVIEDADRLTERAANALLKAVEEP 147 (395)
T ss_pred HHCCCCCCEEE---EEC-CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCC
T ss_conf 87689987189---826-8776889999999999852730379559998077874899999999852178
No 261
>PRK13566 anthranilate synthase; Provisional
Probab=96.49 E-value=0.024 Score=36.19 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=18.6
Q ss_pred CCEEEEECCC--CCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 9899997854--698889999999985789839999
Q gi|254780916|r 53 VNVIFLSLIN--CEDDKENILKNIVDKIPIVPIIVQ 86 (482)
Q Consensus 53 ~dlillD~~m--P~~dGlell~~i~~~~p~ipvIii 86 (482)
+.+|++--.- ...+-+++.+.+|..+|..-+-++
T Consensus 260 FQvVlSqrf~~~~~~~p~~~Yr~LR~~NPSPYm~~~ 295 (724)
T PRK13566 260 FEVVPGQTFYEPCERSPSELFRRLKRINPSPYGFLI 295 (724)
T ss_pred EEECCCEEECCCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 998471577345899999999999706999738999
No 262
>PRK04132 replication factor C small subunit; Provisional
Probab=96.42 E-value=0.0028 Score=42.78 Aligned_cols=109 Identities=18% Similarity=0.189 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH--CCCCCCCCCCCCCCCCCCCCCCHHHH---
Q ss_conf 1111112222222222222222344320488732777436799999984--26754332101234655421002433---
Q gi|254780916|r 137 CALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHE--SGKRAFFPFFIVNCGMIDQDKIEKFL--- 211 (482)
Q Consensus 137 ~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~--~s~r~~~~fi~v~c~~~~~~~~e~~l--- 211 (482)
..++.++|+.....++.+.+.+ .|--+.|.-|++||||++.|-++-. ++......|+.+|.+.--......+.
T Consensus 22 k~LddIVgQehIVkRLK~YVk~--~smPHLLFaGPPGvGKt~~al~lar~l~ge~wr~nflelnas~~~~~~~~~~~v~~ 99 (863)
T PRK04132 22 QRLDEIVGQDHIVKRLKHYVKT--GSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKE 99 (863)
T ss_pred CCHHHHCCHHHHHHHHHHHHCC--CCCCCEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 6165522749999999988623--88854430489987714478888887614314555664144212363488887775
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 11255553221110012344667147516642001889998888776
Q gi|254780916|r 212 FGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIE 258 (482)
Q Consensus 212 FG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~ 258 (482)
||..+. +--|.-+.||+||.+-|..+.|..+-+..+
T Consensus 100 ~~~~~p-----------~~~~~~k~~~~de~~~l~~d~~~~~r~~~e 135 (863)
T PRK04132 100 FARTKP-----------IGGASFKIIFLDEADALTQDAQQALRRTME 135 (863)
T ss_pred CCCCCC-----------CCCCCCCEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 068664-----------578654246443656401011577876677
No 263
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.34 E-value=0.0033 Score=42.25 Aligned_cols=124 Identities=16% Similarity=0.176 Sum_probs=72.2
Q ss_pred CCCCCCCCCCCCCC--CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCC--CC
Q ss_conf 22222222222234--432048873277743679999998426754332101234655421002433112555532--21
Q gi|254780916|r 147 PAMIQVVDLARKAG--DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTK--NS 222 (482)
Q Consensus 147 ~~m~~v~~~i~~~a--~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~--~~ 222 (482)
.+...+.+.+..+. ....-++|.|..||||+.++-+|.+.-.+++.+.+-+.... ++ .+| +++++ ..
T Consensus 139 ~a~~~a~~F~~~y~~~~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~v~~p~----~~-~~l----K~s~~d~s~ 209 (306)
T PRK08939 139 DALMAALDFLEAYKPGEKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTLVHFPE----FI-REL----KNAISDGSV 209 (306)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHH----HH-HHH----HHHHCCCCH
T ss_conf 999999999997376988877889899999899999999999998699299987599----99-999----998648988
Q ss_pred CCCCCCCCCCCCCEEEECCCCH--HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 1100123446671475166420--0188999888877642001123553212343156521433211111
Q gi|254780916|r 223 AQFLGKFIEANGGTIVLEEPDA--LPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVK 290 (482)
Q Consensus 223 ~~~~g~~~~a~~Gtl~l~ei~~--L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~ 290 (482)
....-.+..+ -.|+||+|+. ++..+...+|.+|-+.++. ...| .+.+||-+++++-.
T Consensus 210 ~~~i~~~k~~--~vLiLDDiGaE~~t~W~rd~vl~~IL~~Rm~---~~lP------TffTSN~~~~eLe~ 268 (306)
T PRK08939 210 KEKIDAVKEA--PVLMLDDIGAEQMSSWVRDEVLGVILQYRMQ---EELP------TFFTSNFDFDELEH 268 (306)
T ss_pred HHHHHHHHCC--CEEEEECCCCCCCCHHHHHHHHHHHHHHHHH---CCCC------EEEECCCCHHHHHH
T ss_conf 9999998449--9899844465426777899899999999997---4999------79977999999999
No 264
>TIGR02688 TIGR02688 conserved hypothetical protein TIGR02688; InterPro: IPR014061 Members of this entry are uncharacterised proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families IPR004815 from INTERPRO (ATP-dependent protease La) or IPR003111 from INTERPRO (ATP-dependent protease La (LON) domain). The proteins in this entry are encoded by genes repeatedly found downstream of another gene that encodes an uncharacterised protein of about 880 amino acids in length (see IPR014060 from INTERPRO)..
Probab=96.34 E-value=0.0028 Score=42.83 Aligned_cols=168 Identities=21% Similarity=0.326 Sum_probs=105.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 43204887327774367999999842675433210-12346554210024331125555322111001234466714751
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFF-IVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVL 239 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi-~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l 239 (482)
..+.+..=.|+-||||+++=+-| .|.+ -|..+.++... | |........|++.. .-.+.|
T Consensus 215 E~N~Nl~ELgPk~TGKSY~Y~n~--------Sp~~~liSGG~~T~A~----L------FyN~~t~~~Glv~~--~D~Vaf 274 (470)
T TIGR02688 215 EKNYNLVELGPKGTGKSYIYENL--------SPYVILISGGEITVAK----L------FYNISTRKIGLVGL--WDVVAF 274 (470)
T ss_pred CCCCCEEEECCCCCCCCHHEECC--------CCCEEEEECCCCCCCC----C------EEECCCCCCCEEEE--EEEEEE
T ss_conf 28713487578887730010067--------8777998388205330----0------24756886433431--335655
Q ss_pred CCCCHH----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCC----CCCHH--------HHHHH--HHHH
Q ss_conf 664200----188999888877642001123553212343156521433211----11112--------33379--9988
Q gi|254780916|r 240 EEPDAL----PLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLP----QVKSH--------VFRKD--LYYR 301 (482)
Q Consensus 240 ~ei~~L----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~----~~~~g--------~fr~d--Ly~r 301 (482)
|||..+ |.++=..|=..|++|+|.| |+.+...+++=++.--|.|.++ ++... .||+| +++|
T Consensus 275 DEv~~~~~~~~~e~~~~LK~Y~e~G~f~R-GG~~~~~s~AS~v~~GNVn~~~~~E~~~~~~~Lf~~LPe~~r~DsAFLDR 353 (470)
T TIGR02688 275 DEVATLKFEKPKELIGILKDYLESGSFTR-GGDETLSSDASFVFLGNVNVNLTSESMVKQSDLFSPLPEFMREDSAFLDR 353 (470)
T ss_pred CCHHCCCCCCCHHHHHHHHHHHHCCCCCC-CCCEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 02101001680678877555642576301-56311011323776631468888787466666430387220000147867
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHH
Q ss_conf 65433--446778774422225566777641011223333211111000122-3389868999
Q gi|254780916|r 302 ISVFL--INISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTK-YPWIDNVQEL 361 (482)
Q Consensus 302 L~~~~--i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~-y~WPGNvREL 361 (482)
+..+- =+||-+|+-+ +-+++.+|.. ..+=.||+.-|.+ +++.+++.++
T Consensus 354 iHgylPGWeipki~qs~-----------e~f~~~YG~~-vDyfaE~L~~lR~~~~~~~~~~r~ 404 (470)
T TIGR02688 354 IHGYLPGWEIPKIRQSK-----------EMFSNGYGLV-VDYFAEALRELREDHEYADLVDRH 404 (470)
T ss_pred HHHCCCCCCCCCCCCCH-----------HHHHCCCCEE-EHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 74038886335125631-----------2433554256-304789999841637866786676
No 265
>KOG0482 consensus
Probab=96.19 E-value=0.015 Score=37.72 Aligned_cols=113 Identities=18% Similarity=0.221 Sum_probs=75.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC---CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 4320488732777436799999984267543321012346---5542100243311255553221110012344667147
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCG---MIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTI 237 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~---~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl 237 (482)
.-+.+|++.|.+|+-|.-+-.+|-..++|. .+-+=-.+ +++...+ ++.-||.-.---|.+-.|++|..
T Consensus 373 RGdINicLmGDPGVAKSQLLkyi~rlapRg--vYTTGrGSSGVGLTAAVm-------kDpvTgEM~LEGGALVLAD~GIC 443 (721)
T KOG0482 373 RGDINICLMGDPGVAKSQLLKYISRLAPRG--VYTTGRGSSGVGLTAAVM-------KDPVTGEMVLEGGALVLADGGIC 443 (721)
T ss_pred ECCEEEEECCCCCHHHHHHHHHHHHCCCCC--CEECCCCCCCCCCCHHHH-------CCCCCCEEEECCCEEEECCCCEE
T ss_conf 253469963897133899999998507665--030388877655111211-------37777706860663897169657
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCEEEEECC
Q ss_conf 516642001889998888776420011--235532123431565214
Q gi|254780916|r 238 VLEEPDALPLAVQGRIYNFIETGKIEF--FDSRGAIRLDVRLIFLTE 282 (482)
Q Consensus 238 ~l~ei~~L~~~~Q~~Ll~~l~~~~~~~--~g~~~~~~~~~RiIa~t~ 282 (482)
++||.+.|...-...+..+++.+.+.- -|-.......+-|+|+.|
T Consensus 444 CIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAAN 490 (721)
T KOG0482 444 CIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAAN 490 (721)
T ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
T ss_conf 61233323033357999998765445634201000505677665447
No 266
>PRK07914 hypothetical protein; Reviewed
Probab=96.15 E-value=0.13 Score=31.03 Aligned_cols=259 Identities=13% Similarity=0.113 Sum_probs=126.0
Q ss_pred CEEE-EEECCCCCHHH-HHHHHHHHCCCC---CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 2048-87327774367-999999842675---433210123465542100243311255553221110012344667147
Q gi|254780916|r 163 AIPI-MIQGEFGVGKK-RLSRFIHESGKR---AFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTI 237 (482)
Q Consensus 163 ~~~v-li~Ge~GtGK~-~~A~~iH~~s~r---~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl 237 (482)
..|| ||.|+-.-=.+ .+.+.++....+ .+-++..++.+..+...+... ..+.+| ++.-.+
T Consensus 4 pAPvyLi~G~E~~L~erav~~~~~~ar~~~~~~d~~~~~l~a~~~~~~~l~~~-------------~spSLF--ae~RlV 68 (320)
T PRK07914 4 PSPLHLVLGDEELLVERAVAAVLRSARKRAGTADVPVDRLRAGDVSTYELAEL-------------LSPSLF--AEERVV 68 (320)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHH-------------HCCCCC--CCCEEE
T ss_conf 99879997081999999999999999850379984346621466888899987-------------186766--884499
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH---HHHHHHHHH
Q ss_conf 51664200188999888877642001123553212343156521433211111123337999886543---344677877
Q gi|254780916|r 238 VLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVF---LINISTLRS 314 (482)
Q Consensus 238 ~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~---~i~iPpLRe 314 (482)
++.+.++++.+....|+..+.+. -+..+=|+..+..+ . ++-||..|.-. .+..|+|..
T Consensus 69 vv~~~~~~~~~~~~~l~~yl~~p----------~~~t~LV~~h~gg~------k---~Kkl~~~lkk~ga~v~~~~~l~k 129 (320)
T PRK07914 69 VLEAAAEAGKDAVALIESAAADL----------PAGTVLVVVHSGGG------R---AKALANQLRKLGAQVHPCARITK 129 (320)
T ss_pred EEECCCCCCHHHHHHHHHHHCCC----------CCCEEEEEEECCCC------H---HHHHHHHHHHCCCEEEECCCCCC
T ss_conf 98361102688999999985299----------99808999705874------0---46799999976998986556588
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 44222255667776410112233332111110001223389868999999999987438981068895454212445432
Q gi|254780916|r 315 RSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKER 394 (482)
Q Consensus 315 R~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~~~~~~ 394 (482)
..|=+ .|+.+-.+..|+ .++++|.+.|..- -=+|++||.+.|.+++... ++.|+.+++............
T Consensus 130 ~~e~~-----~~v~~e~~~~g~---~i~~~A~~~Lv~~-vG~dl~eLaae~~qL~~d~-~g~It~~~V~~~~~g~~e~~~ 199 (320)
T PRK07914 130 ASERA-----DFVRKEFRSLRV---KVDDETVTALLDA-VGSDIRELASACSQLVADT-GGAVDAAAVRRYHSGKAEVKG 199 (320)
T ss_pred HHHHH-----HHHHHHHHHCCC---CCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHCCCCEEEH
T ss_conf 68999-----999999998599---9999999999999-8623999999999996057-997369999999289712209
Q ss_pred CCCCCCCCCCCCCCCCCC--CHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 234322222233444321--000000001123444543258999999999999999828727899978489988999999
Q gi|254780916|r 395 EFHTETACTCYTEGKSSD--TILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKI 472 (482)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKl 472 (482)
....+. ...+.... ..+.+......+... ....|..-=| .|.++ ..-+|+..+.|+.|||..=.+.+-+
T Consensus 200 F~vaDa----a~~g~~~~AL~~lr~al~~G~~pv~---i~~alA~~~R-~la~v-~~~~~~~~~~A~~lg~~Pw~v~ka~ 270 (320)
T PRK07914 200 FDIADK----AVAGDVAGAAEALRWAMMRGEPHVV---LADALAEAVH-TIGRV-GPLSGDPYRLAGQLGMPPWRVQKAQ 270 (320)
T ss_pred HHHHHH----HHCCCHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHH-HHHHH-HHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999----9878999999999999974997499---9999999999-99998-8613998999988299959999999
Q ss_pred HH
Q ss_conf 98
Q gi|254780916|r 473 RE 474 (482)
Q Consensus 473 k~ 474 (482)
+.
T Consensus 271 ~q 272 (320)
T PRK07914 271 KQ 272 (320)
T ss_pred HH
T ss_conf 99
No 267
>KOG0735 consensus
Probab=96.14 E-value=0.0054 Score=40.78 Aligned_cols=138 Identities=21% Similarity=0.237 Sum_probs=60.3
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC-CCCCCC---CCCCEE
Q ss_conf 3204887327774367999999842675433210123465542100243311255553221110-012344---667147
Q gi|254780916|r 162 CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQF-LGKFIE---ANGGTI 237 (482)
Q Consensus 162 ~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~-~g~~~~---a~~Gtl 237 (482)
...-||+.|++||||+++|-++-..+. -.||.|-. ++++ +...| +..+. .-+|+. |.--.|
T Consensus 700 ~~~giLLyGppGcGKT~la~a~a~~~~---~~fisvKG----PElL-~KyIG-------aSEq~vR~lF~rA~~a~PCiL 764 (952)
T KOG0735 700 LRTGILLYGPPGCGKTLLASAIASNSN---LRFISVKG----PELL-SKYIG-------ASEQNVRDLFERAQSAKPCIL 764 (952)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCC---EEEEEECC----HHHH-HHHHC-------CCHHHHHHHHHHHHCCCCEEE
T ss_conf 655458877999857888888885378---05998258----8999-98745-------007889999998651497489
Q ss_pred EECCCCHHHHH-------HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC-C--CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 51664200188-------999888877642001123553212343156521433-2--1111112333799988654334
Q gi|254780916|r 238 VLEEPDALPLA-------VQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKN-L--LPQVKSHVFRKDLYYRISVFLI 307 (482)
Q Consensus 238 ~l~ei~~L~~~-------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~-L--~~~~~~g~fr~dLy~rL~~~~i 307 (482)
|+||.+.+.+. +-.|....|-+. +++-+. ---|-|+|+|+++ | ..+..-|+|.+-.| -
T Consensus 765 FFDEfdSiAPkRGhDsTGVTDRVVNQlLTe----lDG~Eg-l~GV~i~aaTsRpdliDpALLRpGRlD~~v~-------C 832 (952)
T KOG0735 765 FFDEFDSIAPKRGHDSTGVTDRVVNQLLTE----LDGAEG-LDGVYILAATSRPDLIDPALLRPGRLDKLVY-------C 832 (952)
T ss_pred EECCCCCCCCCCCCCCCCCHHHHHHHHHHH----HCCCCC-CCEEEEEEECCCCCCCCHHHCCCCCCCEEEE-------C
T ss_conf 712102437666877777429999999876----036334-4538999733783436776628876540156-------7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 4677877442222556677
Q gi|254780916|r 308 NISTLRSRSEDIPWLVHFF 326 (482)
Q Consensus 308 ~iPpLReR~eDI~~L~~~f 326 (482)
.+|.=-||-|=+..|...+
T Consensus 833 ~~P~~~eRl~il~~ls~s~ 851 (952)
T KOG0735 833 PLPDEPERLEILQVLSNSL 851 (952)
T ss_pred CCCCCHHHHHHHHHHHHCC
T ss_conf 9989289999999985345
No 268
>pfam03709 OKR_DC_1_N Orn/Lys/Arg decarboxylase, N-terminal domain. This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure.
Probab=96.10 E-value=0.045 Score=34.27 Aligned_cols=66 Identities=18% Similarity=0.306 Sum_probs=51.4
Q ss_pred HHHHHHHHHHCCCEEEEECC-H-HHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 99999999988988999893-7-99998608-9989999785469888999999998578983999926899
Q gi|254780916|r 23 IKIIKDHVESYGYDVFIVNV-S-DLSTISKI-QVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQTTQDN 91 (482)
Q Consensus 23 ~~~l~~~L~~~G~~v~~a~~-~-al~~l~~~-~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT~~~~ 91 (482)
.+.+...|+..||+|..+.+ + +...++.. +.++|++|| +....+++++++++.+++||-+++-+..
T Consensus 6 ~~~l~~~l~~~~~~vv~~~~~~d~~~~~~~~~~i~avil~~---~~~~~~ll~~ir~~n~~lPvFl~~~~~~ 74 (111)
T pfam03709 6 SRELAEALEATGREVVDATSTDDLLSLIETFTDIAAVVLSW---DDEARGLLDEIRRRNFDLPVFLLAETRT 74 (111)
T ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEEE---CHHHHHHHHHHHHHCCCCCEEEEECHHH
T ss_conf 89999999978988997487899999998387876899984---6068999999997478999898844125
No 269
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.07 E-value=0.0046 Score=41.29 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=44.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC----CCEEEEEECCCCCHHHHHHHHHH----HCCCCCCCCCCCCCCC
Q ss_conf 1112222222222222222344----32048873277743679999998----4267543321012346
Q gi|254780916|r 140 DSLIAVSPAMIQVVDLARKAGD----CAIPIMIQGEFGVGKKRLSRFIH----ESGKRAFFPFFIVNCG 200 (482)
Q Consensus 140 ~~LiG~S~~m~~v~~~i~~~a~----~~~~vli~Ge~GtGK~~~A~~iH----~~s~r~~~~fi~v~c~ 200 (482)
+.+.|....+.++.+.++.+|. ...=+++.|+.|+||+.+++.|- ++|....++.-++.-.
T Consensus 51 d~~fG~e~~i~~~V~~~k~AA~g~~~~k~IllL~GPvGsGKStl~~~Lk~~lE~ys~t~eG~~Y~~~w~ 119 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWN 119 (361)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 131164899999999999998446712569999889988779999999999998626776855999833
No 270
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.06 E-value=0.029 Score=35.59 Aligned_cols=38 Identities=18% Similarity=0.089 Sum_probs=28.1
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 22222222344320488732777436799999984267
Q gi|254780916|r 151 QVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGK 188 (482)
Q Consensus 151 ~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~ 188 (482)
.+++.+.--.....-|.|.|++|+||+++.+.|-..-+
T Consensus 15 ~il~~isl~i~~Ge~v~i~G~sGsGKSTLl~~l~Gl~~ 52 (166)
T cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 88944588988999999995899988999999869876
No 271
>PRK05629 hypothetical protein; Validated
Probab=96.02 E-value=0.15 Score=30.59 Aligned_cols=186 Identities=12% Similarity=0.099 Sum_probs=103.2
Q ss_pred CCCCCEEE-EEECCCCCHHHHHHH-HHH---HCCCC-CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34432048-873277743679999-998---42675-4332101234655421002433112555532211100123446
Q gi|254780916|r 159 AGDCAIPI-MIQGEFGVGKKRLSR-FIH---ESGKR-AFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEA 232 (482)
Q Consensus 159 ~a~~~~~v-li~Ge~GtGK~~~A~-~iH---~~s~r-~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a 232 (482)
.|+-.-|| ||.||-.-=.+..-+ .++ ..... .+-.+..+++...+...+.+. . ....| +
T Consensus 11 ~~~~~pPvYLl~G~E~yLid~a~~~l~~~i~~~~~~~~~~n~~~~~~~e~~~~~l~~a-----------~--~~~~F--~ 75 (331)
T PRK05629 11 PISVQPAVHLVLGEDEFLAERARINIVHDIRSSMASPDSLQVTTLKASEITQGELLDA-----------L--SPSLF--A 75 (331)
T ss_pred CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHH-----------C--CCCCC--C
T ss_conf 9999999799971719999999999999998628874462258850787999999987-----------3--75888--8
Q ss_pred CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH--HHHHHHH
Q ss_conf 67147516642001889998888776420011235532123431565214332111111233379998865--4334467
Q gi|254780916|r 233 NGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRIS--VFLINIS 310 (482)
Q Consensus 233 ~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~--~~~i~iP 310 (482)
+.-.+++.+.+.++...+..++..+.+ +.+.-+=|++....| . |+-||-.|. +..++.+
T Consensus 76 ~~RlVvv~~~~~~~~~~~d~ll~y~~~----------p~p~t~LV~~~~~~d------k---rkkl~k~l~k~g~v~e~~ 136 (331)
T PRK05629 76 EDRVVVLTNMDQAGQDAVDLALSAAVD----------PSPGTYLIVMHSGGG------R---SKSMVKKLEKVAVVHDAA 136 (331)
T ss_pred CCEEEEEECHHHCCHHHHHHHHHHHHC----------CCCCEEEEEEECCCC------C---CHHHHHHHHCCEEEEECC
T ss_conf 825999957253064479999998419----------999649999845875------1---067999986074698668
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf 7877442222556677764101122333321111100012233898689999999999874389810688954542124
Q gi|254780916|r 311 TLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDSHLTEDRFVLLLSRE 389 (482)
Q Consensus 311 pLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~ 389 (482)
+|.++ |++..+... .++.| +.++++|.+.|..+ .-.|.++|.|-|+.++. ..++.|+.+++.......
T Consensus 137 ~l~~~--~l~~wi~~~----~~~~g---~~i~~~A~~~L~~~-~G~DL~~l~~El~KL~~-~~~g~It~e~V~~~~~~~ 204 (331)
T PRK05629 137 KLKDR--DRPGWVKQE----FKNHK---VQVTPDVIHALLEG-VGSDLRELASAVSQLVE-DTQGNVTVEKVRAYYVGV 204 (331)
T ss_pred CCCHH--HHHHHHHHH----HHHCC---CCCCHHHHHHHHHH-HCCCHHHHHHHHHHHHC-CCCCCCCHHHHHHHHCCC
T ss_conf 89999--999999999----99869---99799999999999-68049999999999840-779985899999982697
No 272
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.01 E-value=0.0076 Score=39.73 Aligned_cols=121 Identities=16% Similarity=0.102 Sum_probs=63.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC----CCCCC-------C
Q ss_conf 111112222222222222222344320488732777436799999984267543321012346----55421-------0
Q gi|254780916|r 138 ALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCG----MIDQD-------K 206 (482)
Q Consensus 138 ~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~----~~~~~-------~ 206 (482)
.|+.++|+..+...+...+.+ .......|+.|+.|+||..+|+.+-..=.-.+.+-....|. .-|+= .
T Consensus 2 ~F~~iiGq~~~~~~L~~ai~~-~rl~hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~~~~~~~~~ri~~~nHPDl~~i~P~~~ 80 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIEQ-NRIAPAYLFAGPEGVGRKLAALRFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQ 80 (314)
T ss_pred CCCCCCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCEEEEECCCC
T ss_conf 833125949999999999985-9967448778999832999999999998578999976655875189997788605620
Q ss_pred CHHHHHCCCCC-CCCC---------CCC--CC-CCC----CCCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 02433112555-5322---------111--00-123----446671475166420018899988887764
Q gi|254780916|r 207 IEKFLFGDVDL-QTKN---------SAQ--FL-GKF----IEANGGTIVLEEPDALPLAVQGRIYNFIET 259 (482)
Q Consensus 207 ~e~~lFG~~~~-~~~~---------~~~--~~-g~~----~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~ 259 (482)
.+..++....+ ..+. ..+ .. ..+ -++..-.+++++.+.|..+.+..||..||+
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m~~~AaNaLLKtLEE 150 (314)
T PRK07399 81 HQGKLITASEAEEAGLKRKSPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE 150 (314)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCC
T ss_conf 0345455778987653026877787999999999973188568847999889787199999999986147
No 273
>TIGR00764 lon_rel ATP-dependent protease, putative; InterPro: IPR004663 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the archaeal lon protease homologs, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein conserved region.; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0030163 protein catabolic process.
Probab=95.95 E-value=0.01 Score=38.75 Aligned_cols=142 Identities=18% Similarity=0.193 Sum_probs=82.1
Q ss_pred CCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC----------CCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 00123446671475166420018899988887764200112355----------32123431565214332111111233
Q gi|254780916|r 225 FLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSR----------GAIRLDVRLIFLTEKNLLPQVKSHVF 294 (482)
Q Consensus 225 ~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~----------~~~~~~~RiIa~t~~~L~~~~~~g~f 294 (482)
..|.+.+|+.|.||+|||..++...|..++..+++++|--.|.+ .++++|+-++++-+.+ .+. .+
T Consensus 227 ~~g~~h~~~~g~l~~d~~~~~~~~~~~~~l~~~~~~~~p~~g~~~~~~g~~~~~~p~pcdf~l~~~g~~~--~~~---~~ 301 (662)
T TIGR00764 227 EAGAIHRAHKGVLYIDEIGTLPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLD--DLE---GL 301 (662)
T ss_pred HHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCHH--HHH---HC
T ss_conf 3221233205505540113221135788887654113543567765556412115666214455146545--654---10
Q ss_pred HHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC---------CCCCCHHHHH
Q ss_conf 37999886543--3446-7787744222255667776410112233332111110001223---------3898689999
Q gi|254780916|r 295 RKDLYYRISVF--LINI-STLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKY---------PWIDNVQELK 362 (482)
Q Consensus 295 r~dLy~rL~~~--~i~i-PpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y---------~WPGNvREL~ 362 (482)
+.-|..|+.++ .+.+ -.+-+-++.-..|+++..++..+.... ..|+.++..-+... ...=.+|+|-
T Consensus 302 ~~~l~~~~~g~gy~~~~~~~~~~~~~~~~~l~~f~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~g~~~~l~l~l~~l~ 379 (662)
T TIGR00764 302 HPALRSRIRGYGYEVYLKDTMPDTPENRDKLVQFVAQEVKKDGRL--PHFTRDAVEEIVREAQRRAGRKDHLTLRLRELG 379 (662)
T ss_pred CHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHCCCCCCCEEHHHHHH
T ss_conf 045665430144168872667775024789999999987624788--864267899999998862276442010256663
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999987438
Q gi|254780916|r 363 NILLRAVIGLK 373 (482)
Q Consensus 363 n~i~r~~i~~~ 373 (482)
++++.+--.+.
T Consensus 380 ~~~~~~~d~~~ 390 (662)
T TIGR00764 380 GLVRAAGDIAK 390 (662)
T ss_pred HHHHHHCCHHC
T ss_conf 36653100111
No 274
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.94 E-value=0.0054 Score=40.76 Aligned_cols=118 Identities=20% Similarity=0.332 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH---C-CCCCCCCC-CCCCCCCCC----CCCCHH
Q ss_conf 11112222222222222222344320488732777436799999984---2-67543321-012346554----210024
Q gi|254780916|r 139 LDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHE---S-GKRAFFPF-FIVNCGMID----QDKIEK 209 (482)
Q Consensus 139 ~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~---~-s~r~~~~f-i~v~c~~~~----~~~~e~ 209 (482)
.+.++|.=+.+.+.....-.-.......|+.|+.|+||..+|+++=. + ++....|= .--+|..+. +|...
T Consensus 4 ~~~~~~~Q~~i~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~C~~~~~~~HPD~~~- 82 (329)
T PRK08058 4 WEQLTALQPIVVKMLQNSIAKNRLAHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIESGNHPDVHL- 82 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEE-
T ss_conf 7888831899999999999859966156557899988999999999997399999999887888999987699997677-
Q ss_pred HHHCCCCCCCCCCCCCCCC---C----CCCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 3311255553221110012---3----4466714751664200188999888877642
Q gi|254780916|r 210 FLFGDVDLQTKNSAQFLGK---F----IEANGGTIVLEEPDALPLAVQGRIYNFIETG 260 (482)
Q Consensus 210 ~lFG~~~~~~~~~~~~~g~---~----~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~ 260 (482)
++. ++.+-...+-.-+ + .+++.-..++++.+.|..+.+..||..|||.
T Consensus 83 -i~p--~~~~i~idqiR~L~~~~~~~p~~g~~KV~II~~Ae~m~~~AaNALLKtLEEP 137 (329)
T PRK08058 83 -VAP--DGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEP 137 (329)
T ss_pred -ECC--CCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHHCC
T ss_conf -456--6140779999999999643875788679997347762999999999986468
No 275
>KOG0651 consensus
Probab=95.90 E-value=0.016 Score=37.46 Aligned_cols=137 Identities=13% Similarity=0.157 Sum_probs=75.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC-----------CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 211111111222222222222222234-----------432048873277743679999998426754332101234655
Q gi|254780916|r 134 NEHCALDSLIAVSPAMIQVVDLARKAG-----------DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMI 202 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~~v~~~i~~~a-----------~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~ 202 (482)
..+..++.+-|-...+.++++.++--- .-..-++|.|++||||++.||++-..-. -.|+.+-.+++
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg---~nfl~v~ss~l 202 (388)
T KOG0651 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMG---VNFLKVVSSAL 202 (388)
T ss_pred CCCCCHHHHCCHHHHHHHHHHHEEEECCCCHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEEHHHH
T ss_conf 554678771783888899886557402481002345777882568767999864599999998659---85477447666
Q ss_pred CCCCC------HHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHH-----------HHHHHHHHHHHHHHH-HCCC
Q ss_conf 42100------24331125555322111001234466714751664200-----------188999888877642-0011
Q gi|254780916|r 203 DQDKI------EKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDAL-----------PLAVQGRIYNFIETG-KIEF 264 (482)
Q Consensus 203 ~~~~~------e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L-----------~~~~Q~~Ll~~l~~~-~~~~ 264 (482)
-+..+ -.+.|.+. .. . .--.+|+|||+.. ...+|.-|..++..= .|.
T Consensus 203 v~kyiGEsaRlIRemf~yA------~~-~-------~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd- 267 (388)
T KOG0651 203 VDKYIGESARLIRDMFRYA------RE-V-------IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFD- 267 (388)
T ss_pred HHHHCCCHHHHHHHHHHHH------HH-H-------CCEEEEEHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHCCCH-
T ss_conf 3300265788999999778------65-2-------7557751012311457733555205999999999987421401-
Q ss_pred CCCCCCCCCCCEEEEECCCCC---CCCCCHHHH
Q ss_conf 235532123431565214332---111111233
Q gi|254780916|r 265 FDSRGAIRLDVRLIFLTEKNL---LPQVKSHVF 294 (482)
Q Consensus 265 ~g~~~~~~~~~RiIa~t~~~L---~~~~~~g~f 294 (482)
.--.|.+|++||..- ..++..|++
T Consensus 268 ------~l~rVk~ImatNrpdtLdpaLlRpGRl 294 (388)
T KOG0651 268 ------TLHRVKTIMATNRPDTLDPALLRPGRL 294 (388)
T ss_pred ------HCCCCCEEEECCCCCCCCHHHCCCCCC
T ss_conf ------206631798538866566554287521
No 276
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=95.81 E-value=0.0075 Score=39.77 Aligned_cols=98 Identities=21% Similarity=0.303 Sum_probs=61.1
Q ss_pred CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCC-----CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 671475166420018899988887764200112355321234315652143321-----111112333799988654334
Q gi|254780916|r 233 NGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLL-----PQVKSHVFRKDLYYRISVFLI 307 (482)
Q Consensus 233 ~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~-----~~~~~g~fr~dLy~rL~~~~i 307 (482)
--|.||+||+|-|..+.=.-|-|+|++ .+.| =||.+||+-.. +...-.-+--||+.||=.++
T Consensus 275 vpGVLFIDEvHMLDiEcFsfLnralEs-~laP-----------ivI~ATNRG~~~IRGTd~~sPHGiP~DlLDRllII~- 341 (395)
T pfam06068 275 VPGVLFIDEVHMLDIECFSFLNRALES-ELAP-----------IVILATNRGICTIRGTDIISPHGIPLDLLDRLLIIT- 341 (395)
T ss_pred ECCCEEEECCHHCCHHHHHHHHHHHCC-CCCC-----------EEEEEECCCCEEECCCCCCCCCCCCHHHHHHEEEEE-
T ss_conf 427468850000005899888776505-6787-----------699984465203525677588899877773025885-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4677877442222556677764101122333321111100012233
Q gi|254780916|r 308 NISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYP 353 (482)
Q Consensus 308 ~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~ 353 (482)
..-=-.+||..+ +..-|++.+ ..++++|+..|....
T Consensus 342 ---T~py~~~ei~~I----i~iRa~~E~---v~l~~~al~~L~~ig 377 (395)
T pfam06068 342 ---TEPYTREEIKQI----LEIRAQEEG---VEISEEALDLLAKIG 377 (395)
T ss_pred ---CCCCCHHHHHHH----HHHHHHHHC---CCCCHHHHHHHHHHH
T ss_conf ---688998999999----998777607---877989999999865
No 277
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.79 E-value=0.021 Score=36.68 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=17.3
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 23443204887327774367999999842675433210123465
Q gi|254780916|r 158 KAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGM 201 (482)
Q Consensus 158 ~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~ 201 (482)
|+.+...|+|+.|-+|+||+.+-.++-... ++.++.||.+.
T Consensus 1538 RAmqv~kpilLEGsPGVGKTSlItaLAr~t---G~kliRINLSe 1578 (4600)
T COG5271 1538 RAMQVGKPILLEGSPGVGKTSLITALARKT---GKKLIRINLSE 1578 (4600)
T ss_pred HHHHCCCCEEECCCCCCCHHHHHHHHHHHH---CCCEEEEECCC
T ss_conf 998528854622799866789999999974---57247863201
No 278
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=95.76 E-value=0.029 Score=35.62 Aligned_cols=83 Identities=19% Similarity=0.326 Sum_probs=41.2
Q ss_pred EEEEECCCCCHHHHHHHHHH-HCCCC---CCCCC-CCCCCCCCCCC---CCHHHHHCCCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf 48873277743679999998-42675---43321-01234655421---0024331125555322111-00123446671
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIH-ESGKR---AFFPF-FIVNCGMIDQD---KIEKFLFGDVDLQTKNSAQ-FLGKFIEANGG 235 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH-~~s~r---~~~~f-i~v~c~~~~~~---~~e~~lFG~~~~~~~~~~~-~~g~~~~a~~G 235 (482)
.|+|.|++|+||+++++.+- ..+.. +...| +.+.|..++.. -+...|+-+-......... ..-.+...+.-
T Consensus 2 ~i~i~G~aG~GKTtll~kl~~~wa~g~~~~~~~~vf~~~~r~~~~~~~~sl~~ll~~~~~~~~~~~~~~~~~~~~~~~k~ 81 (165)
T pfam05729 2 TVILQGEAGSGKTTLLQKLALLWAQGKLPQDFDFVFFLPCRELSRSGEASLADLLFSQWPEPAAPVSEVWAVILELPERV 81 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 89998279898999999999999869843697289999956707776689999999876774576378999998397728
Q ss_pred EEEECCCCHHHH
Q ss_conf 475166420018
Q gi|254780916|r 236 TIVLEEPDALPL 247 (482)
Q Consensus 236 tl~l~ei~~L~~ 247 (482)
-++||.+++++.
T Consensus 82 L~ilDGlDE~~~ 93 (165)
T pfam05729 82 LLILDGLDELAS 93 (165)
T ss_pred EEEECCHHHHCC
T ss_conf 999648455144
No 279
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=95.75 E-value=0.0071 Score=39.95 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=31.2
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 43204887327774367999999842675433210123465542
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQ 204 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~ 204 (482)
.+..+||-.|+||+||+=+||-|=..+ +.|||.|-.+-+++
T Consensus 45 V~PKNILMiGpTGVGKTEIARRlAKL~---~aPFiKVEAtKfTE 85 (463)
T TIGR00390 45 VTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFTE 85 (463)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEEEEEE
T ss_conf 587430432788985447999999984---48914666410011
No 280
>KOG1808 consensus
Probab=95.74 E-value=0.0099 Score=38.93 Aligned_cols=122 Identities=16% Similarity=0.206 Sum_probs=76.6
Q ss_pred CCCCCCCCCCCCCCCCC-CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHC-CCCCCCCCCC
Q ss_conf 22222222222223443-204887327774367999999842675433210123465542100243311-2555532211
Q gi|254780916|r 146 SPAMIQVVDLARKAGDC-AIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSA 223 (482)
Q Consensus 146 S~~m~~v~~~i~~~a~~-~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG-~~~~~~~~~~ 223 (482)
++..++....+.++-.+ ..|+||+|++|+||+.+...+-.. ....++.+|--... + -.++.| +....+|...
T Consensus 422 T~~vq~~la~~~~a~~~~~~pillqG~tssGKtsii~~la~~---~g~~~vrinnheht-d--~qeyig~y~~~~~g~l~ 495 (1856)
T KOG1808 422 TPRVQKNLADLARAISSGKFPILLQGPTSSGKTSIIKELARA---TGKNIVRINNHEHT-D--LQEYIGTYVADDNGDLV 495 (1856)
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHH---HCCCCEEHHCCCCC-H--HHHHHHHHEECCCCCEE
T ss_conf 689998899999999658998677547676811599999998---54673420024633-3--99998665007889725
Q ss_pred CCCCCCCC-CCCC-EEEECCCCHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCC
Q ss_conf 10012344-6671-475166420018899988887764-20011235532123
Q gi|254780916|r 224 QFLGKFIE-ANGG-TIVLEEPDALPLAVQGRIYNFIET-GKIEFFDSRGAIRL 273 (482)
Q Consensus 224 ~~~g~~~~-a~~G-tl~l~ei~~L~~~~Q~~Ll~~l~~-~~~~~~g~~~~~~~ 273 (482)
-+.|.+-+ +.+| -+|||+|.--+-+.=.-|.|+|.+ ++++-...+..++.
T Consensus 496 freg~LV~Alr~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~ 548 (1856)
T KOG1808 496 FREGVLVQALRNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKA 548 (1856)
T ss_pred EEHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECC
T ss_conf 53468999987087798402012406789999840454041256344323224
No 281
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=95.57 E-value=0.0087 Score=39.31 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=36.7
Q ss_pred HHHHHC----CCCCEEEEECC-CCCCCH---HHHHHHHHHHCCCCCEEEEECCCCHHHHHHH
Q ss_conf 999860----89989999785-469888---9999999985789839999268999999988
Q gi|254780916|r 45 LSTISK----IQVNVIFLSLI-NCEDDK---ENILKNIVDKIPIVPIIVQTTQDNIKILNCF 98 (482)
Q Consensus 45 l~~l~~----~~~dlillD~~-mP~~dG---lell~~i~~~~p~ipvIiiT~~~~~~~~~~a 98 (482)
+..+.. ..+++|++|-- -=..+. +-+++.+....|++.||+|||.-+.+.....
T Consensus 175 L~e~~~d~~L~~y~~iIiDEaHERsl~~D~LLg~Lk~ll~~R~dLKvIimSATid~e~fs~y 236 (1295)
T PRK11131 175 LAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSRH 236 (1295)
T ss_pred HHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
T ss_conf 99862099878877799868556880199999999999833999889995586897999965
No 282
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.53 E-value=0.025 Score=36.11 Aligned_cols=107 Identities=8% Similarity=0.130 Sum_probs=54.6
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC---CC-----CCCC
Q ss_conf 432048873277743679999998426754332101234655421002433112555532211100---12-----3446
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFL---GK-----FIEA 232 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~---g~-----~~~a 232 (482)
....--|+.|+.|+||...|+.+-..-.-... -..+|...+.+...-...+ ...+..+.. .. ++..
T Consensus 18 klsHAYLF~G~~G~Gk~~~a~~~a~~l~~~~~--~~~~~~~~~~~~~~id~~~----~~i~~~~i~~~i~~~~~~~~~~~ 91 (303)
T PRK07132 18 KISHSFLLKSNYNNDLDESILYFLNKFNNLQS--LNLNLEELPYNIFLFDIFD----EDLSKEEFLSAIEKFSFSSFVSN 91 (303)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCEEECCCC----CCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 97616886789986799999999999729987--8887545653230413322----20016889999999973665568
Q ss_pred CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 6714751664200188999888877642001123553212343156521433
Q gi|254780916|r 233 NGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKN 284 (482)
Q Consensus 233 ~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~ 284 (482)
..-..++||++.|+.+.+..||..|++. +.++.+|.+|+..
T Consensus 92 ~~Kv~IIdea~~lt~~A~NaLLKtLEEP-----------p~~~~fil~t~~~ 132 (303)
T PRK07132 92 QKKILIIKNIEKTSNSSLNALLKTIEEP-----------SKNTYFLLTTKNI 132 (303)
T ss_pred CEEEEEEECHHHCCHHHHHHHHHHCCCC-----------CCCEEEEEEECCH
T ss_conf 7069998165533999999999870389-----------8684899972882
No 283
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.36 E-value=0.015 Score=37.59 Aligned_cols=286 Identities=15% Similarity=0.122 Sum_probs=136.1
Q ss_pred HHHHHCCCCC--EEEEECCCCCCCHHHHHHHH--HHHCCCCCEEEEECCC-------CHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 9998608998--99997854698889999999--9857898399992689-------99999988850574322222222
Q gi|254780916|r 45 LSTISKIQVN--VIFLSLINCEDDKENILKNI--VDKIPIVPIIVQTTQD-------NIKILNCFLYNRISKFFLNLVSR 113 (482)
Q Consensus 45 l~~l~~~~~d--lillD~~mP~~dGlell~~i--~~~~p~ipvIiiT~~~-------~~~~~~~a~~~g~~d~l~KP~~~ 113 (482)
..++++.+.. .|| +.-|...|-..+.-- ++..+++|++-++|.. -.|+..++++.-+---+ -..
T Consensus 55 v~mik~gk~aGrgiL--i~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~qa~RraIGvri---kE~ 129 (450)
T COG1224 55 VKMIKQGKMAGRGIL--IVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQALRRAIGVRI---KET 129 (450)
T ss_pred HHHHHHCCCCCCEEE--EECCCCCCHHHHHHHHHHHHCCCCCCEEECCCEEEEECCCHHHHHHHHHHHHHCEEE---EEE
T ss_conf 999971766661799--978999768899999999858999821501332233100088999999998645486---466
Q ss_pred CCCCCCCCCC--CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCE-EEEEECCCCCH----HHH
Q ss_conf 2222222222--22222222222-1111111122222222222-------22222344320-48873277743----679
Q gi|254780916|r 114 KQLCDSIICA--LREGVVPSQEN-EHCALDSLIAVSPAMIQVV-------DLARKAGDCAI-PIMIQGEFGVG----KKR 178 (482)
Q Consensus 114 ~~L~~~i~~a--l~~~~~~~~~~-~~~~~~~LiG~S~~m~~v~-------~~i~~~a~~~~-~vli~Ge~GtG----K~~ 178 (482)
.....-.... .++...+-..- ......-+.-.+..|.+.+ +++.+.....- -|.|.-|+|.= +..
T Consensus 130 reV~EGeV~~l~i~~~~~p~~~y~~~~~~~~i~LkT~d~~k~~~lg~~i~~ql~~~~V~~GDVI~Id~etG~V~klGrs~ 209 (450)
T COG1224 130 REVYEGEVVELEIRRARNPLNPYGKVPSGAIITLKTKDEEKTLRLGPEIAEQLVKEGVEEGDVIYIDAETGRVKKLGRSK 209 (450)
T ss_pred EEEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEECCHHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCC
T ss_conf 68887789999876235799876655453289999636645762598999999983744587899982566799942242
Q ss_pred HHHHHHHC-------CCCCCCCC------C-CCCCCCCCCC-----CCHHHHHCCCCCCCCCC----CC-CCCCCCC---
Q ss_conf 99999842-------67543321------0-1234655421-----00243311255553221----11-0012344---
Q gi|254780916|r 179 LSRFIHES-------GKRAFFPF------F-IVNCGMIDQD-----KIEKFLFGDVDLQTKNS----AQ-FLGKFIE--- 231 (482)
Q Consensus 179 ~A~~iH~~-------s~r~~~~f------i-~v~c~~~~~~-----~~e~~lFG~~~~~~~~~----~~-~~g~~~~--- 231 (482)
.+.. ..+ -+-..+|. + .|..-.++.. -+-+.+||..+.-+... +. ..+++++
T Consensus 210 ~~~~-~~~dl~~~~~V~~P~Gev~K~KEi~~~vTLHDlDv~nar~~G~~sl~~~~~~eI~~evR~~vn~~V~~~ieeGkA 288 (450)
T COG1224 210 ARAR-EDFDLEDTRFVPLPEGEVQKRKEIVQTVTLHDLDVANARAQGILSLFSGGTGEITDEVREEVNEKVKKWIEEGKA 288 (450)
T ss_pred CCCC-CCCCCCCEEEEECCCCCEEEEEEEEEEEEEHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCE
T ss_conf 3354-223344217987798852566778999870031343204111375652776657889999999999999854957
Q ss_pred -CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCC-----CCCHHHHHHHHHHHHHHH
Q ss_conf -66714751664200188999888877642001123553212343156521433211-----111123337999886543
Q gi|254780916|r 232 -ANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLP-----QVKSHVFRKDLYYRISVF 305 (482)
Q Consensus 232 -a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~-----~~~~g~fr~dLy~rL~~~ 305 (482)
-=-|.||+||+|-|..+.=.-|-|+|++ .|.| =||.|||+-... ...-.-.-.||+.||-.
T Consensus 289 ElVpGVLFIDEvHmLDIE~FsFlnrAlEs-e~aP-----------Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllI- 355 (450)
T COG1224 289 ELVPGVLFIDEVHMLDIECFSFLNRALES-ELAP-----------IIILATNRGMTKIRGTDIESPHGIPLDLLDRLLI- 355 (450)
T ss_pred EEECCEEEEECHHHHHHHHHHHHHHHHHC-CCCC-----------EEEEECCCCEEEECCCCCCCCCCCCHHHHHHEEE-
T ss_conf 86134289732134557899999987631-4675-----------7999717750012166776888898766622567-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 344677877442222556677764101122333321111100012233898689
Q gi|254780916|r 306 LINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQ 359 (482)
Q Consensus 306 ~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvR 359 (482)
++.+.--+++|..++.. -+++.+ ..++++|++.|..-.----+|
T Consensus 356 ---I~t~py~~~EireIi~i----Ra~ee~---i~l~~~Ale~L~~ig~etSLR 399 (450)
T COG1224 356 ---ISTRPYSREEIREIIRI----RAKEED---IELSDDALEYLTDIGEETSLR 399 (450)
T ss_pred ---EECCCCCHHHHHHHHHH----HHHHHC---CCCCHHHHHHHHHHCHHHHHH
T ss_conf ---74477988999999997----643540---304888999997515034489
No 284
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.18 E-value=0.049 Score=33.99 Aligned_cols=98 Identities=13% Similarity=0.076 Sum_probs=60.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 204887327774367999999842675433210123465542--100243311255553221110012344667147516
Q gi|254780916|r 163 AIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQ--DKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLE 240 (482)
Q Consensus 163 ~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~--~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ 240 (482)
.-+||+.|-.||||+.+-+++|+.-.-....+|.|+-..+.. .+++ +|=+ +.-+| .||.|
T Consensus 85 ANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~-~Lr~-----------~~~kF------IlFcD 146 (287)
T COG2607 85 ANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVE-LLRA-----------RPEKF------ILFCD 146 (287)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHH-HHHC-----------CCCEE------EEEEC
T ss_conf 523677637777747999999999874177079976888865799999-9961-----------88608------99956
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 64200188999888877642001123553212343156521433
Q gi|254780916|r 241 EPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKN 284 (482)
Q Consensus 241 ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~ 284 (482)
...==.-+.--|.|...-+ |+-..++.||=+-|++|+.
T Consensus 147 DLSFe~gd~~yK~LKs~Le------G~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 147 DLSFEEGDDAYKALKSALE------GGVEGRPANVLFYATSNRR 184 (287)
T ss_pred CCCCCCCCHHHHHHHHHHC------CCCCCCCCEEEEEEECCCC
T ss_conf 7777778138999999853------8855688707999715875
No 285
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=95.07 E-value=0.012 Score=38.32 Aligned_cols=60 Identities=18% Similarity=0.171 Sum_probs=40.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 111112222222222222222344320488732777436799999984267543321012
Q gi|254780916|r 138 ALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIV 197 (482)
Q Consensus 138 ~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v 197 (482)
..+.++-....-..+.+.++.+.....++||.|++|+||+++.+++=..-+..+..+++|
T Consensus 114 tl~~L~~~g~~~~~~~~~L~~~v~~~~~ilIsG~TGSGKTT~l~all~~i~~~~~riiti 173 (283)
T pfam00437 114 TLDDLGMTGAFDADIAEFLRQAVQARGNILVSGGTGSGKTTLLYALLNEINTDDERIVTI 173 (283)
T ss_pred CHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 999973897785999999999998197599988999988999999998408777627873
No 286
>PRK13409 putative ATPase RIL; Provisional
Probab=94.98 E-value=0.23 Score=29.32 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=35.6
Q ss_pred HHHHHHHHCCCE------EEEECCHH-----HHHHHCCCCCEEEEECCCCCCCH---HHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 999999988988------99989379-----99986089989999785469888---99999999857898399992689
Q gi|254780916|r 25 IIKDHVESYGYD------VFIVNVSD-----LSTISKIQVNVIFLSLINCEDDK---ENILKNIVDKIPIVPIIVQTTQD 90 (482)
Q Consensus 25 ~l~~~L~~~G~~------v~~a~~~a-----l~~l~~~~~dlillD~~mP~~dG---lell~~i~~~~p~ipvIiiT~~~ 90 (482)
.+..+++..|.+ +..-+.+. ++..--..||+.++|--....|= +.+.+.+++....-.|||+| |+
T Consensus 192 ~~~el~~~lgL~~~~~r~~~~lSgG~~qrv~~a~~l~~~~~~~~lDEPtn~LDi~~r~~l~~~lr~L~~~~tvIVVe-HD 270 (590)
T PRK13409 192 KLDEVVEELGLENVLDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVE-HD 270 (590)
T ss_pred HHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE-EH
T ss_conf 89999997399535379300289989999999999843999899648755489999999999999985698689998-63
No 287
>PRK11477 carbohydrate diacid transcriptional activator CdaR; Provisional
Probab=94.94 E-value=0.036 Score=34.95 Aligned_cols=32 Identities=22% Similarity=0.048 Sum_probs=28.8
Q ss_pred HHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999828727899978489988999999981
Q gi|254780916|r 444 GLAMKLYRAQMSEVARRLGIGRSTLYRKIREY 475 (482)
Q Consensus 444 ~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~~ 475 (482)
..++-.+|||.++||+.|.|.|+||.+||+|.
T Consensus 327 L~~yfe~n~si~~tA~~L~IHRNTL~YRL~KI 358 (385)
T PRK11477 327 LAAWFRHNVQPLATSKALFIHRNTLEYRLNRI 358 (385)
T ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999809999999998486450699999999
No 288
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=94.93 E-value=0.022 Score=36.42 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=20.2
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 432048873277743679999998
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIH 184 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH 184 (482)
..+..|+|.||+|+||+..++.|=
T Consensus 84 ~~~QsIiiSGESGaGKTe~~K~il 107 (691)
T cd01380 84 EKNQSIIVSGESGAGKTVSAKYIM 107 (691)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 998069996279998779999999
No 289
>PRK01172 ski2-like helicase; Provisional
Probab=94.91 E-value=0.026 Score=36.01 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=32.4
Q ss_pred CCCEEEEE-CCCCCC--CH--H-HHHHHHHHHCCCCCEEEEECC-CCHHHHHHHHHCCCC
Q ss_conf 99899997-854698--88--9-999999985789839999268-999999988850574
Q gi|254780916|r 52 QVNVIFLS-LINCED--DK--E-NILKNIVDKIPIVPIIVQTTQ-DNIKILNCFLYNRIS 104 (482)
Q Consensus 52 ~~dlillD-~~mP~~--dG--l-ell~~i~~~~p~ipvIiiT~~-~~~~~~~~a~~~g~~ 104 (482)
..++|+.| +.|=+. =| + .++.+++...|++.+|.+||. ++.+.... +.++.
T Consensus 135 ~v~~vViDEiH~i~d~~RG~~lE~~l~kl~~l~~~~qiIgLSATi~N~~~la~--WL~a~ 192 (674)
T PRK01172 135 DVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNANELAQ--WLNAS 192 (674)
T ss_pred CCCEEEEECCEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH--HHCCC
T ss_conf 36989982652506877249999999999853866079971578689999998--83885
No 290
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.023 Score=36.33 Aligned_cols=123 Identities=16% Similarity=0.297 Sum_probs=61.1
Q ss_pred CCCEEEECCCCHHHHH------------HHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEEECCCC---CCCCCC--HHHH
Q ss_conf 6714751664200188------------99988887764200112355321234-3156521433---211111--1233
Q gi|254780916|r 233 NGGTIVLEEPDALPLA------------VQGRIYNFIETGKIEFFDSRGAIRLD-VRLIFLTEKN---LLPQVK--SHVF 294 (482)
Q Consensus 233 ~~Gtl~l~ei~~L~~~------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~-~RiIa~t~~~---L~~~~~--~g~f 294 (482)
+.|.+|+|||+..... +|.-||-+++-..+.- -+.+++.| .-+||+---. +.+++- +|+|
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~T--KyG~VkTdHILFIasGAFh~sKPSDLiPELQGRf 327 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVST--KYGPVKTDHILFIASGAFHVAKPSDLIPELQGRF 327 (444)
T ss_pred HCCEEEEEHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCEEEC--CCCCCCCCEEEEEECCCEECCCHHHCCHHHCCCC
T ss_conf 56908973466787437889988664320102103105754431--5444014437887148200378132176662777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH-------H
Q ss_conf 37999886543344677877442222--------55667776410112233332111110001223389868-------9
Q gi|254780916|r 295 RKDLYYRISVFLINISTLRSRSEDIP--------WLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNV-------Q 359 (482)
Q Consensus 295 r~dLy~rL~~~~i~iPpLReR~eDI~--------~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNv-------R 359 (482)
.+.+++-+|- .+|.- .|+..|-+-+. ..|.. ..|+++|+..+....|-=|- |
T Consensus 328 ---------PIRVEL~~Lt--~~Df~rILtep~~sLikQY~aLlk-TE~v~-l~FtddaI~~iAeiA~~vN~~~ENIGAR 394 (444)
T COG1220 328 ---------PIRVELDALT--KEDFERILTEPKASLIKQYKALLK-TEGVE-LEFTDDAIKRIAEIAYQVNEKTENIGAR 394 (444)
T ss_pred ---------CEEEECCCCC--HHHHHHHHCCCHHHHHHHHHHHHH-HCCEE-EEECHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf ---------3488704489--989999963760789999999973-15834-8853799999999999855430001178
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999987
Q gi|254780916|r 360 ELKNILLRAVI 370 (482)
Q Consensus 360 EL~n~i~r~~i 370 (482)
-|..++++++-
T Consensus 395 RLhTvlErlLe 405 (444)
T COG1220 395 RLHTVLERLLE 405 (444)
T ss_pred HHHHHHHHHHH
T ss_conf 89999999998
No 291
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.81 E-value=0.13 Score=31.07 Aligned_cols=110 Identities=13% Similarity=0.136 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHC----CCCCCCCC-CCCCCCCC----CCCCCHHHHHCCCCCCC
Q ss_conf 22222222223443204887327774367999999842----67543321-01234655----42100243311255553
Q gi|254780916|r 149 MIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES----GKRAFFPF-FIVNCGMI----DQDKIEKFLFGDVDLQT 219 (482)
Q Consensus 149 m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~----s~r~~~~f-i~v~c~~~----~~~~~e~~lFG~~~~~~ 219 (482)
.+..++++-.-.....-.|+.|+.|+||..+|+.+=.. .+....|= .--+|..+ .+|... ++-+.++-+
T Consensus 8 ~~~~w~~l~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~~~HPD~~~--i~pe~~~~~ 85 (328)
T PRK05707 8 QQSLWQQLAGRGRHAHAYLLHGPAGIGKRALAERLAAFLLCEAPQGGGACGSCKGCQLLAAGSHPDNFV--LEPEEADKP 85 (328)
T ss_pred CHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEE--EECCCCCCC
T ss_conf 489999999779822046447999867999999999998489999989998888999987589998799--842666776
Q ss_pred CCCCCCCCCC-------CCCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 2211100123-------4466714751664200188999888877642
Q gi|254780916|r 220 KNSAQFLGKF-------IEANGGTIVLEEPDALPLAVQGRIYNFIETG 260 (482)
Q Consensus 220 ~~~~~~~g~~-------~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~ 260 (482)
-...+-..+. .+.+.-..++++.+.|....+..||..|||.
T Consensus 86 I~IdqIR~l~~~~~~~~~~g~~KV~iI~~Ae~m~~~AaNALLKtLEEP 133 (328)
T PRK05707 86 IKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEP 133 (328)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHCHHHHHHHHHHHHCC
T ss_conf 979999999999831766789579995028773899999999985078
No 292
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=94.74 E-value=0.037 Score=34.90 Aligned_cols=78 Identities=17% Similarity=0.134 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHC-CCCC-------CCCCC
Q ss_conf 222222223443204887327774367999999842675433210123465542100243311-2555-------53221
Q gi|254780916|r 151 QVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDL-------QTKNS 222 (482)
Q Consensus 151 ~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG-~~~~-------~~~~~ 222 (482)
.+.+.|.-.-+--.-|=|.|++||||+++||.|=--=.-..| =|.+|.+.+. ..+.|-|| |.+. |.|..
T Consensus 344 ~~l~gi~F~~~aGe~laIIGPSgSGKStLaR~~vG~W~~~~G-~VRLDGadl~--qWD~e~lG~~iGYLPQdvELF~GTv 420 (556)
T TIGR01842 344 PTLRGISFAIQAGEALAIIGPSGSGKSTLARILVGIWPPASG-SVRLDGADLK--QWDRETLGKHIGYLPQDVELFSGTV 420 (556)
T ss_pred HHHCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCC-CEEEEHHHHH--CCCHHHCCCCCCCCCCCCCCCCCCH
T ss_conf 422786215637745888747865258898788721013565-3364033440--2375365880154798505076767
Q ss_pred CCCCCCCCC
Q ss_conf 110012344
Q gi|254780916|r 223 AQFLGKFIE 231 (482)
Q Consensus 223 ~~~~g~~~~ 231 (482)
.+++-+|++
T Consensus 421 a~NIARF~e 429 (556)
T TIGR01842 421 AENIARFGE 429 (556)
T ss_pred HHHCCCCCC
T ss_conf 640244688
No 293
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.72 E-value=0.25 Score=28.99 Aligned_cols=121 Identities=22% Similarity=0.220 Sum_probs=67.6
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHC--CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC----CCC--
Q ss_conf 43204887327774367999999842--6754332101234655421002433112555532211100123----446--
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHES--GKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKF----IEA-- 232 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~--s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~----~~a-- 232 (482)
.+...|.++|.+||||+.+|+.+-.. +.+.++.+--|... |.=..|..+.|.+... +....+.|.| ++|
T Consensus 192 ktKknvIL~G~pGtGKT~lAk~lA~~l~g~~~~~rv~~Vqfh--psysYEDfi~Gyrp~~-~gf~~~~G~f~~~~~~A~~ 268 (459)
T PRK11331 192 TIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFH--QSYSYEDFIQGYRPNG-VGFRRKDGIFYNFCQQAKE 268 (459)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEC--CCCCHHHHHCCCCCCC-CCCEECCCHHHHHHHHHHH
T ss_conf 458827965899988789999999997078877846899835--8866178764605688-8613268369999999984
Q ss_pred ---CCCEEEECCCCHHHHH-HHHHHHHHHHHHHC------CC---C--CCCCCCCCCCEEEEECCCC
Q ss_conf ---6714751664200188-99988887764200------11---2--3553212343156521433
Q gi|254780916|r 233 ---NGGTIVLEEPDALPLA-VQGRIYNFIETGKI------EF---F--DSRGAIRLDVRLIFLTEKN 284 (482)
Q Consensus 233 ---~~Gtl~l~ei~~L~~~-~Q~~Ll~~l~~~~~------~~---~--g~~~~~~~~~RiIa~t~~~ 284 (482)
+.=.+++|||..--.+ .=.-|+.+|+..+- .- - |..=.++.|+.||.+-|-.
T Consensus 269 ~p~~~y~~iideinr~~~~~~fgel~~liE~dkR~~~~~~~l~ys~~~~~~f~vP~Nl~iigtmNta 335 (459)
T PRK11331 269 QPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTA 335 (459)
T ss_pred CCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEECCCCCEEEEEECCCC
T ss_conf 9898769998432033889999999999641256765225630036888533468865999850334
No 294
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.65 E-value=0.055 Score=33.65 Aligned_cols=112 Identities=14% Similarity=0.089 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCCCHHHHHCCCCCCCCCC
Q ss_conf 22222222222222344320488732777436799999984267543321--0123465542100243311255553221
Q gi|254780916|r 145 VSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPF--FIVNCGMIDQDKIEKFLFGDVDLQTKNS 222 (482)
Q Consensus 145 ~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~f--i~v~c~~~~~~~~e~~lFG~~~~~~~~~ 222 (482)
+|.+++.+...+.+ .......|+.|+.|+||..+|+.+-..=--.+.|- ..+. ....+|..+ ++-..++.....
T Consensus 2 ~~~~We~L~~~i~~-~Rl~HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~p~~~~~i~-~~~HPD~~~--i~pe~k~~~~~I 77 (290)
T PRK05917 2 ENAAWEALLQRVRD-QKVPSAILLHGQDLSNLSQYAYELASLILLESSPEAQYKIS-QKIHPDIHE--FFPEGKGRLHSI 77 (290)
T ss_pred CCHHHHHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH-HCCCCCEEE--ECCCCCCCCCCH
T ss_conf 85499999999983-99660687689998659999999999985789961688987-468998599--615777887867
Q ss_pred CCCCCCCC-------CCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 11001234-------466714751664200188999888877642
Q gi|254780916|r 223 AQFLGKFI-------EANGGTIVLEEPDALPLAVQGRIYNFIETG 260 (482)
Q Consensus 223 ~~~~g~~~-------~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~ 260 (482)
.+...+.+ +...-..++++.+.|..+.+..||..|||.
T Consensus 78 d~iR~l~~~i~~~p~~g~~KV~IId~Ad~Mn~~AaNALLKtLEEP 122 (290)
T PRK05917 78 ETPRAIKKQIWIHPYEANYKIYIIHEADRMTLDAISAFLKVLEDP 122 (290)
T ss_pred HHHHHHHHHHCCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCC
T ss_conf 899999999641864688269997567763899999999973479
No 295
>KOG0481 consensus
Probab=94.62 E-value=0.094 Score=32.01 Aligned_cols=216 Identities=16% Similarity=0.127 Sum_probs=113.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 432048873277743679999998426754332101---23465542100243311255553221110012344667147
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFI---VNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTI 237 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~---v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl 237 (482)
.-+.+||+.|.+||-|.-+-+.+-..|+-+ -+-. -..|+++...+- +..|...----|.+-.|+||.+
T Consensus 362 RGDINVLLLGDPgtAKSQlLKFvEkvsPIa--VYTSGKGSSAAGLTASV~R-------D~~tReFylEGGAMVLADgGVv 432 (729)
T KOG0481 362 RGDINVLLLGDPGTAKSQLLKFVEKVSPIA--VYTSGKGSSAAGLTASVIR-------DPSTREFYLEGGAMVLADGGVV 432 (729)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHCCCEE--EEECCCCCCCCCCEEEEEE-------CCCCCEEEEECCEEEEECCCEE
T ss_conf 264028983698526899999998608637--9946887643346246786-------6876338982665998169789
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCEEEEECCCCC---CCCC---CHHHHHHHHHHH--------
Q ss_conf 51664200188999888877642001--1235532123431565214332---1111---112333799988--------
Q gi|254780916|r 238 VLEEPDALPLAVQGRIYNFIETGKIE--FFDSRGAIRLDVRLIFLTEKNL---LPQV---KSHVFRKDLYYR-------- 301 (482)
Q Consensus 238 ~l~ei~~L~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~~RiIa~t~~~L---~~~~---~~g~fr~dLy~r-------- 301 (482)
++||-+.|-.+-...+..+++.+.+. .-|-.....+.+-+.|+.|.-. +++- +.=.|-.-.+-|
T Consensus 433 CIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVK 512 (729)
T KOG0481 433 CIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVK 512 (729)
T ss_pred EEEHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEEEEE
T ss_conf 83000025820156898998765577755052256424033445337866554346785556322346764513799983
Q ss_pred ----------H--HHHHHHHH---HHHHH---HHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCC---------
Q ss_conf ----------6--54334467---78774---4222255667776410112-2333321111100012233---------
Q gi|254780916|r 302 ----------I--SVFLINIS---TLRSR---SEDIPWLVHFFLQSFCTKN-AIKQISISDKALSLLTKYP--------- 353 (482)
Q Consensus 302 ----------L--~~~~i~iP---pLReR---~eDI~~L~~~fl~~~~~~~-~~~~~~ls~~a~~~L~~y~--------- 353 (482)
| .++.+++- ...+- .+|. +--+++++|-.-. -+-.+.+|++|-+.|.+|.
T Consensus 513 D~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~e--i~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q 590 (729)
T KOG0481 513 DEHDEERDITLAKHVINVHVSKANAQTDSQEENEGE--IPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQ 590 (729)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 367603536898775310004444556743347882--238999999999986038888999999998779678778877
Q ss_pred ----------CCCCHHHHHHHHHHHHH---HCCCCCCCHHHHHHHHC
Q ss_conf ----------89868999999999987---43898106889545421
Q gi|254780916|r 354 ----------WIDNVQELKNILLRAVI---GLKDSHLTEDRFVLLLS 387 (482)
Q Consensus 354 ----------WPGNvREL~n~i~r~~i---~~~~~~i~~~~~~~~l~ 387 (482)
-|=-||||+.+|+-+-. +.-.+.-++.|+...+.
T Consensus 591 ~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~R 637 (729)
T KOG0481 591 HEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEALR 637 (729)
T ss_pred HHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 54312546777635899999999998887610785466777999998
No 296
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=94.60 E-value=0.1 Score=31.73 Aligned_cols=103 Identities=14% Similarity=0.136 Sum_probs=55.2
Q ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEE-CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46988899999999857898399992-68999999988850574322222222222222222222222222222111111
Q gi|254780916|r 62 NCEDDKENILKNIVDKIPIVPIIVQT-TQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVVPSQENEHCALD 140 (482)
Q Consensus 62 mP~~dGlell~~i~~~~p~ipvIiiT-~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~~~~~~~~~~~~ 140 (482)
||..+-...+.++. ..+.|.|++| +....+.+..+++.+-.--+.-+....+|...+..-+.+...++ ..-|..+-
T Consensus 65 ~~~~~r~~~i~~~~--~~~~P~iI~sk~~~~p~~l~~~a~~~~~pil~s~~~ts~l~~~l~~yL~~~lA~~-~~vHGvl~ 141 (308)
T COG1493 65 LSSEERKKRIGKLF--SLDTPALIVSKGLPIPEELLDAAKKYNIPILTSKLSTSELSFTLTNYLSRPLAER-VNVHGVLL 141 (308)
T ss_pred CCHHHHHHHHHHHH--CCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCCC-EEEEEEEE
T ss_conf 58455899999974--7699779997899997899999887099669853318999999999861310520-25546899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 1122222222222222223443204887327774367999999842
Q gi|254780916|r 141 SLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES 186 (482)
Q Consensus 141 ~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~ 186 (482)
.+.| .-|||+|++|.||+-+|=.+=..
T Consensus 142 ~I~G-------------------vGVLItG~SG~GKSElALeLi~r 168 (308)
T COG1493 142 DIFG-------------------VGVLITGPSGAGKSELALELIKR 168 (308)
T ss_pred EEEE-------------------EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9942-------------------58999878988776899999984
No 297
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=94.55 E-value=0.044 Score=34.37 Aligned_cols=68 Identities=25% Similarity=0.402 Sum_probs=34.1
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHH-H---CCCCCCCCCCCCCCCCCC-CCCCHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 432048873277743679999998-4---267543321012346554-210024331125555322111001234
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIH-E---SGKRAFFPFFIVNCGMID-QDKIEKFLFGDVDLQTKNSAQFLGKFI 230 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH-~---~s~r~~~~fi~v~c~~~~-~~~~e~~lFG~~~~~~~~~~~~~g~~~ 230 (482)
..+..|+|.||+|+||+..++.|= . .|......--.+...-+. .-++| =||..+-...+.+.|-|++-
T Consensus 86 ~~nQsIiiSGESGAGKTes~K~il~yL~~~~~~~~~~~~~i~~~il~~npiLE--AFGNAkT~~N~NSSRFGK~i 158 (674)
T cd01384 86 GKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLE--AFGNAKTVRNNNSSRFGKFV 158 (674)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH--HHHCCCCCCCCCCCCCCEEE
T ss_conf 89966999558988889999999999999718887654169999987514999--85155656898767510678
No 298
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=94.40 E-value=0.35 Score=28.01 Aligned_cols=119 Identities=12% Similarity=0.056 Sum_probs=57.5
Q ss_pred EEEECCCCHH----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC-------CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 4751664200----1889998888776420011235532123431565214-------3321111112333799988654
Q gi|254780916|r 236 TIVLEEPDAL----PLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTE-------KNLLPQVKSHVFRKDLYYRISV 304 (482)
Q Consensus 236 tl~l~ei~~L----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~-------~~L~~~~~~g~fr~dLy~rL~~ 304 (482)
.++++|+-.. +...+.-|+++|+... ..|.- =||+-|+ .+....-....|-+|++.-..+
T Consensus 131 iILIEE~Pn~~~~d~~~fr~~L~~~L~s~~------~~PlV---~IiSEt~s~~g~~~~~~~~~ta~rLlg~eIl~hp~i 201 (490)
T pfam03215 131 LILVEELPNQFYSDAEKFREVIREVLQSIW------HLPLI---FCLTECNSLEGDNNQDRFGIDAETIMTKDILIMPRI 201 (490)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHCC------CCCEE---EEEEECCCCCCCCCCCCCCCHHHHHCCHHHHHCCCC
T ss_conf 999965887442366999999999997089------99879---999704666677643323210786359888708896
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 334467787744222255667776410112233332111110001223389868999999999987
Q gi|254780916|r 305 FLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVI 370 (482)
Q Consensus 305 ~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i 370 (482)
..|..=|.. |......|.+.+.+.++....-....++.+..- --|.||-=-|.++-.+.
T Consensus 202 ~~I~FNpIA------pT~M~KaL~~I~~kE~~~~~~~~~~~le~Ia~~-S~GDIRsAInsLQF~~~ 260 (490)
T pfam03215 202 DTITFNPIA------PTFMKKALVRISVQEGKLKSPKSDSKLEVICQE-AGGDLRSAINSLQFSSS 260 (490)
T ss_pred CEEEECCCC------HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-CCCCHHHHHHHHHHHCC
T ss_conf 369868887------889999999999985765567520389999986-48729999999998626
No 299
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=94.37 E-value=0.045 Score=34.26 Aligned_cols=78 Identities=23% Similarity=0.359 Sum_probs=45.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCCCH---------HHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 43204887327774367999999842675433210123-4655421002---------4331125555322111001234
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVN-CGMIDQDKIE---------KFLFGDVDLQTKNSAQFLGKFI 230 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~-c~~~~~~~~e---------~~lFG~~~~~~~~~~~~~g~~~ 230 (482)
.-+..|+|+||+|.||+--|+.|-++ |..|. |.+.....+| -|=||..+-.-.+-+.|-|++-
T Consensus 150 ~eNQtIiISGESGAGKTe~aK~ImqY-------lasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyi 222 (1463)
T COG5022 150 KENQTIIISGESGAGKTENAKRIMQY-------LASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYI 222 (1463)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHH-------HHHHCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCEE
T ss_conf 89853999647888830889999999-------99860678621899999998416288872364002367731234518
Q ss_pred C---CCCCEEEECCCCHH
Q ss_conf 4---66714751664200
Q gi|254780916|r 231 E---ANGGTIVLEEPDAL 245 (482)
Q Consensus 231 ~---a~~Gtl~l~ei~~L 245 (482)
+ -++|++.=..|+.-
T Consensus 223 kI~Fd~~g~I~GA~I~~Y 240 (1463)
T COG5022 223 KIEFDENGEICGAKIETY 240 (1463)
T ss_pred EEEECCCCCEECHHHHHH
T ss_conf 999779984510223555
No 300
>TIGR00634 recN DNA repair protein RecN; InterPro: IPR004604 DNA repair protein RecN is thought to be DNA damage inducible and involved in recombinational processes. The N-terminal region of most of the bacterial RecN proteins sequenced to date contains an ATP/GTP binding domain within an SMC-like motif. SMC-like domains are involved in chromosomal scaffolding and segregation. It is possible that the function of RecN in homologous recombination is either structural or enzymatic or both. RecN may be involved in the proper positioning of the recombining segments of DNA, ensuring normal recombination. The observation that inactivation of this gene leads to a decreased transformation efficiency, as well as increased sensitivity to DNA-damaging agents, may be due to some defect in chromosomal partitioning or positioning during these recombination-dependent processes . The protein may function presynaptically to process double-stranded breaks to produce 3 single-stranded DNA intermediates during recombination. ; GO: 0005524 ATP binding, 0006281 DNA repair, 0006310 DNA recombination.
Probab=94.35 E-value=0.031 Score=35.40 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=26.9
Q ss_pred EEECCCCCHHHHHHHHHHH-CCCCCCCCCCCCCCC
Q ss_conf 8732777436799999984-267543321012346
Q gi|254780916|r 167 MIQGEFGVGKKRLSRFIHE-SGKRAFFPFFIVNCG 200 (482)
Q Consensus 167 li~Ge~GtGK~~~A~~iH~-~s~r~~~~fi~v~c~ 200 (482)
.|+|||||||+++--+||- .|.|.+..+|.-.|.
T Consensus 26 VLTGETGaGKSm~i~Al~LL~G~r~~~~~vR~G~~ 60 (605)
T TIGR00634 26 VLTGETGAGKSMIIDALSLLLGQRAGASLVRSGEN 60 (605)
T ss_pred EEECCCCCCHHHHHHHHHHCCCCCCCCCEEECCCC
T ss_conf 43046455078877669870588547631233787
No 301
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.29 E-value=0.12 Score=31.40 Aligned_cols=68 Identities=22% Similarity=0.230 Sum_probs=48.2
Q ss_pred CCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 211111111222222---222222222234432048873277743679999998426754332101234655
Q gi|254780916|r 134 NEHCALDSLIAVSPA---MIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMI 202 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~---m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~ 202 (482)
......++++|+-.+ +--+.+.++.=--.-.-|||.|++||||+.+|-+|-..- ..+-||++++.+.+
T Consensus 33 ~~k~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF~~isgsEi 103 (450)
T COG1224 33 KAKFIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL-GEDVPFVAISGSEI 103 (450)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCEEECCCEE
T ss_conf 874768861124988876259999997176666179997899976889999999985-89998215013322
No 302
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ; InterPro: IPR013364 Proteins in this entry are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase (IPR013363 from INTERPRO) of a type-IV secretion-like system of the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii..
Probab=94.27 E-value=0.027 Score=35.83 Aligned_cols=32 Identities=25% Similarity=0.159 Sum_probs=25.1
Q ss_pred EEEECCCCCHHHHHHHHHHHCC--CCCCCCCCCC
Q ss_conf 8873277743679999998426--7543321012
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIHESG--KRAFFPFFIV 197 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH~~s--~r~~~~fi~v 197 (482)
=||.||||+||+++|-+|+.+- ...++..|++
T Consensus 152 GLiCG~TGSGKSTl~AaiY~~~l~t~pdRKivT~ 185 (374)
T TIGR02525 152 GLICGETGSGKSTLAAAIYRHCLETYPDRKIVTY 185 (374)
T ss_pred EEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 0221778972899999999985074889707986
No 303
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=94.26 E-value=0.018 Score=37.16 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=36.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 111111112222222222222222344320488732777436799999984
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHE 185 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~ 185 (482)
.-+++++++-..---..-++.+..+-.+..+|||.|=|||||+++|.|+=+
T Consensus 111 ~vfTLDdYV~~gimtaaQ~d~l~~Av~ar~NIlv~GGTGSGKTTLaNAlla 161 (315)
T TIGR02782 111 RVFTLDDYVEAGIMTAAQRDVLREAVAARKNILVVGGTGSGKTTLANALLA 161 (315)
T ss_pred CCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 104707776404455789999999997129889981458857999999999
No 304
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.23 E-value=0.02 Score=36.73 Aligned_cols=47 Identities=17% Similarity=0.068 Sum_probs=35.1
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 222222222344320488732777436799999984267543321012
Q gi|254780916|r 150 IQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIV 197 (482)
Q Consensus 150 ~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v 197 (482)
.++.+.+..+.....+|+|.|++|+||+.+.+++-..-+.. ..++++
T Consensus 12 ~~~~~~L~~~v~~~~nIlIsG~tGSGKTTll~al~~~i~~~-~rivti 58 (186)
T cd01130 12 PLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD-ERIITI 58 (186)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCC-CCEEEE
T ss_conf 99999999999859989998999998999999999613345-645984
No 305
>pfam02310 B12-binding B12 binding domain. This domain binds to B12 (adenosylcobamide), it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase.
Probab=94.22 E-value=0.46 Score=27.16 Aligned_cols=75 Identities=15% Similarity=0.240 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEECC----HH-HHHHHCCCCCEEEEECCC-CCCCH-HHHHHHHHHHCCCCCEEEEECC
Q ss_conf 69989999999999988988999893----79-999860899899997854-69888-9999999985789839999268
Q gi|254780916|r 17 DKDDEQIKIIKDHVESYGYDVFIVNV----SD-LSTISKIQVNVIFLSLIN-CEDDK-ENILKNIVDKIPIVPIIVQTTQ 89 (482)
Q Consensus 17 DDd~~~~~~l~~~L~~~G~~v~~a~~----~a-l~~l~~~~~dlillD~~m-P~~dG-lell~~i~~~~p~ipvIiiT~~ 89 (482)
|=-|.-...++..|+..||+|...+. .+ .+.+.+.+||+|-+...| ...+. .++++.+|+..|++++|+--.+
T Consensus 11 ~~~plGl~~la~~l~~~G~~V~~~d~~~~~~~i~~~i~~~~pdiVgiS~~~~~~~~~~~~l~~~ik~~~p~~~iv~GG~~ 90 (121)
T pfam02310 11 DLHPLGLNYVAAALRAAGFEVILLGADVPPEDIVEAIRAENPDVVGLSALMTTNLPAAKELARLLKRIRPGVKVVVGGPH 90 (121)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 75848999999999985995001024799999999999809999999523211211368999999985989759983876
Q ss_pred CC
Q ss_conf 99
Q gi|254780916|r 90 DN 91 (482)
Q Consensus 90 ~~ 91 (482)
.+
T Consensus 91 ~t 92 (121)
T pfam02310 91 PT 92 (121)
T ss_pred CC
T ss_conf 34
No 306
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.22 E-value=0.11 Score=31.51 Aligned_cols=100 Identities=15% Similarity=0.090 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC--
Q ss_conf 222222223443204887327774367999999842675433210123465542100243311255553221110012--
Q gi|254780916|r 151 QVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGK-- 228 (482)
Q Consensus 151 ~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~-- 228 (482)
.+++.+.--.....-|-|.|++|+||+++.+.|...-....+.+ .++.. .-+++.....|...++..+
T Consensus 14 ~vl~~is~~i~~ge~~~l~G~NGsGKTTl~~~l~G~~~~~~G~i-~~~~~---------~~i~y~~QLSgGqkqr~~la~ 83 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV-TWGST---------VKIGYFEQLSGGEKMRLALAK 83 (144)
T ss_pred EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEE-EECCC---------CEEEEEHHCCHHHHHHHHHHH
T ss_conf 99963489987999999998999849999999848988985099-99996---------089987007999999999999
Q ss_pred CCCCCCCEEEECCCCH-HHHHHHHHHHHHHHHH
Q ss_conf 3446671475166420-0188999888877642
Q gi|254780916|r 229 FIEANGGTIVLEEPDA-LPLAVQGRIYNFIETG 260 (482)
Q Consensus 229 ~~~a~~Gtl~l~ei~~-L~~~~Q~~Ll~~l~~~ 260 (482)
.-..+.-.++|||... |.+..+..+.+.|.+.
T Consensus 84 al~~~p~iliLDEPt~~LD~~~~~~i~~~l~~~ 116 (144)
T cd03221 84 LLLENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 972599899995775558999999999999970
No 307
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.21 E-value=0.086 Score=32.28 Aligned_cols=78 Identities=21% Similarity=0.236 Sum_probs=45.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH--HHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 48873277743679999998426754332101234655421002--4331125555322111001234466714751664
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIE--KFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEP 242 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e--~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei 242 (482)
.++|.|+.++||+++.+.++...... ++-+|--.+..+..+ ..+... .. .... ...-+|||||
T Consensus 39 i~~i~GpR~~GKTtllk~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~~--------~~---~~~~-~~~yifLDEI 103 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRAY--------IE---LKER-EKSYIFLDEI 103 (398)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC---EEEEECCCCCCCHHHHHHHHHHH--------HH---HHCC-CCCEEEEEEE
T ss_conf 49998886477899999999747773---59997362000135677899999--------98---5222-5745999833
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 2001889998888776
Q gi|254780916|r 243 DALPLAVQGRIYNFIE 258 (482)
Q Consensus 243 ~~L~~~~Q~~Ll~~l~ 258 (482)
+..+.. +..|-.+.+
T Consensus 104 q~v~~W-~~~lk~l~d 118 (398)
T COG1373 104 QNVPDW-ERALKYLYD 118 (398)
T ss_pred CCCHHH-HHHHHHHHC
T ss_conf 376108-999999975
No 308
>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=94.17 E-value=0.13 Score=31.09 Aligned_cols=118 Identities=15% Similarity=0.057 Sum_probs=60.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCCC---CCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC-CEE
Q ss_conf 3204887327774367999999842675433---210123465542100243311255553221110012344667-147
Q gi|254780916|r 162 CAIPIMIQGEFGVGKKRLSRFIHESGKRAFF---PFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANG-GTI 237 (482)
Q Consensus 162 ~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~---~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~-Gtl 237 (482)
...-+.|.|..|+||+++--..++.-+-..+ +|... +..+-..+ ..+-|..+.. . ... =+.|++ -.|
T Consensus 60 ~~kGlYl~G~VGrGKTmLMDlFy~~lp~~~K~R~HFh~F-M~~vH~~l--~~~~~~~dpl----~-~va-~~l~~~~~lL 130 (361)
T pfam03969 60 PVRGLYLWGGVGRGKTHLMDSFFESLPGERKRRTHFHRF-MFRVHDEL--TTLQGGDDPL----P-IAA-DRFANEARLL 130 (361)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHH-HHHHHHHH--HHHHCCCCCH----H-HHH-HHHHHCCCEE
T ss_conf 998689889988869999999998677534445667899-99999999--9976677638----9-999-9997258779
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 5166420018899988887764200112355321234315652143321111112333799
Q gi|254780916|r 238 VLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDL 298 (482)
Q Consensus 238 ~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dL 298 (482)
|+||.+--.. .-+.+|.-|-+.-|. ..+.+|++||..+++|-..|.-|+.+
T Consensus 131 CfDEFqV~DI-aDAMIL~rLf~~Lf~---------~gvvlV~TSN~~P~~LY~~GLqR~~F 181 (361)
T pfam03969 131 CFDEFEVDDI-GDAMILGRLFEALFA---------RGVSLVATSNTAPEQLYRNGLNRQRF 181 (361)
T ss_pred EEEEEEECCH-HHHHHHHHHHHHHHH---------CCCEEEEECCCCHHHHHCCCCCHHHH
T ss_conf 9763561678-889999999999997---------79789980899989983687417788
No 309
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=94.16 E-value=0.51 Score=26.85 Aligned_cols=188 Identities=14% Similarity=0.090 Sum_probs=96.7
Q ss_pred CEEEEEECCCCCHHHHHHHHH-HHCCCCCCCCCCCCC--CCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 204887327774367999999-842675433210123--46554210024331125555322111001234466714751
Q gi|254780916|r 163 AIPIMIQGEFGVGKKRLSRFI-HESGKRAFFPFFIVN--CGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVL 239 (482)
Q Consensus 163 ~~~vli~Ge~GtGK~~~A~~i-H~~s~r~~~~fi~v~--c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l 239 (482)
-.-+|+.||----+...++.| .......+.||-.++ ...+..+ .+.||.+-. ...+|. +.-.+++
T Consensus 20 ~~~~LlyG~d~glv~e~~~~l~~~~~~~~~~~f~~~~l~~~el~~d--~~~l~de~~--------t~slF~--~~rlI~i 87 (343)
T PRK06585 20 IRAVLLYGPDRGLVRERARRLAKSVVDDPDDPFAVVRLDGDELDAD--PARLEDEAN--------TISLFG--GRRLIWV 87 (343)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHCC--HHHHHHHHH--------CCCCCC--CCEEEEE
T ss_conf 6589996387647999999999972556678741577479988339--999999984--------768768--9848997
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66420018899988887764200112355321234315652143321111112333799988654334467787744222
Q gi|254780916|r 240 EEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDI 319 (482)
Q Consensus 240 ~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI 319 (482)
++.++ ++...|++---.+. -++.+|..+ .+|.. ...+|+ +|-. +...+.+|--.+=..++
T Consensus 88 ~~~~d-------~~~~~l~~~l~~~~-------~~~~lIi~a-~~L~k---~skLrk-~~e~-~~~~~~i~cY~d~~~~l 147 (343)
T PRK06585 88 RAGGK-------SLAAALKALLAEPP-------GDAFIVIEA-GDLKK---GSSLRK-LFET-AASAAAIPCYADDERDL 147 (343)
T ss_pred ECCCH-------HHHHHHHHHHHCCC-------CCEEEEEEC-CCCCC---CCHHHH-HHHH-CCCEEEEEECCCCHHHH
T ss_conf 26872-------56999999981789-------982899973-89773---118999-9986-47869995006998899
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHCCCC
Q ss_conf 2556677764101122333321111100012233898689999999999874-3898106889545421244
Q gi|254780916|r 320 PWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIG-LKDSHLTEDRFVLLLSREG 390 (482)
Q Consensus 320 ~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~-~~~~~i~~~~~~~~l~~~~ 390 (482)
+.++..++.++ |. +++++|++.|..+- .||-..++|-++.+... ...+.|+.+++...+....
T Consensus 148 ~~~i~~~l~~~----g~---~i~~~a~~~L~~~~-g~d~~~~~~EleKL~ly~~~~~~It~edv~~~v~~~~ 211 (343)
T PRK06585 148 ARLIDDELAKA----GL---RITPDARAYLVALL-GGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDAS 211 (343)
T ss_pred HHHHHHHHHHC----CC---CCCHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
T ss_conf 99999999982----99---97799999999873-4279999999999999848999789999999868641
No 310
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.08 E-value=0.095 Score=32.00 Aligned_cols=109 Identities=18% Similarity=0.155 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCCCCCC---CCCEEEEEECCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCHHHHHC-CCCC--
Q ss_conf 2222222222222234---43204887327774367999999842675-433210123465542100243311-2555--
Q gi|254780916|r 145 VSPAMIQVVDLARKAG---DCAIPIMIQGEFGVGKKRLSRFIHESGKR-AFFPFFIVNCGMIDQDKIEKFLFG-DVDL-- 217 (482)
Q Consensus 145 ~S~~m~~v~~~i~~~a---~~~~~vli~Ge~GtGK~~~A~~iH~~s~r-~~~~fi~v~c~~~~~~~~e~~lFG-~~~~-- 217 (482)
-+|.-+..++++.++- ....-.|+.|+.|+||..+|+.+=..--- ...+-..-+|.. ++. -| |.+-
T Consensus 5 ~~PWq~~~~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~llc~~~~~~~~~~~~~----~i~---~g~HPD~~~ 77 (319)
T PRK08769 5 FSPWQQRAFDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPALAQRTRQ----LIA---AGTHPDLQL 77 (319)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH----HHH---CCCCCCEEE
T ss_conf 5877689999999999769942068758999878999999999998379979765433889----996---689989687
Q ss_pred ------CCCCC-------CCCCCCCC-------CCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf ------53221-------11001234-------466714751664200188999888877642
Q gi|254780916|r 218 ------QTKNS-------AQFLGKFI-------EANGGTIVLEEPDALPLAVQGRIYNFIETG 260 (482)
Q Consensus 218 ------~~~~~-------~~~~g~~~-------~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~ 260 (482)
.++.. .+-..+.+ +...-.+++|+.+.|....+..||..|||-
T Consensus 78 i~~~~~~~~~k~k~~I~IdqiR~l~~~~~~~p~~g~~KV~IId~Ad~mn~~AaNalLK~LEEP 140 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRSACNALLKTLEEP 140 (319)
T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCC
T ss_conf 753444454311234869999999999613720279569998066752899999999982279
No 311
>KOG0991 consensus
Probab=94.01 E-value=0.046 Score=34.23 Aligned_cols=187 Identities=17% Similarity=0.223 Sum_probs=95.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCE-EEEEECCCCCHHHHHHHHHH-H-CCCCCCCCCCCCCCCCCCC-CCCH--HHH
Q ss_conf 111112222222222222222344320-48873277743679999998-4-2675433210123465542-1002--433
Q gi|254780916|r 138 ALDSLIAVSPAMIQVVDLARKAGDCAI-PIMIQGEFGVGKKRLSRFIH-E-SGKRAFFPFFIVNCGMIDQ-DKIE--KFL 211 (482)
Q Consensus 138 ~~~~LiG~S~~m~~v~~~i~~~a~~~~-~vli~Ge~GtGK~~~A~~iH-~-~s~r~~~~fi~v~c~~~~~-~~~e--~~l 211 (482)
.+.+++|+-..|.++.-.+ + .-+. +++|.|++||||++.+..+- . .++.-......+|.+.--. +.+- -..
T Consensus 25 ~l~dIVGNe~tv~rl~via-~--~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~ 101 (333)
T KOG0991 25 VLQDIVGNEDTVERLSVIA-K--EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKM 101 (333)
T ss_pred HHHHHHCCHHHHHHHHHHH-H--CCCCCCEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 9988217798999999999-7--289986675279998616489999999838066657632057655460899999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCH
Q ss_conf 11255553221110012344667147516642001889998888776420011235532123431565214332111111
Q gi|254780916|r 212 FGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKS 291 (482)
Q Consensus 212 FG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~ 291 (482)
|..++ -.+-....-.+.|||-+.|.-..|..|-|.++=. ...+|+..++|.. ++.++-
T Consensus 102 FAQ~k----------v~lp~grhKIiILDEADSMT~gAQQAlRRtMEiy-----------S~ttRFalaCN~s-~KIiEP 159 (333)
T KOG0991 102 FAQKK----------VTLPPGRHKIIILDEADSMTAGAQQALRRTMEIY-----------SNTTRFALACNQS-EKIIEP 159 (333)
T ss_pred HHHHH----------CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-----------CCCCHHHHHHCCH-HHHHHH
T ss_conf 98720----------3489985248996152202068999999999997-----------0632000001542-132226
Q ss_pred HHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 233379-9-98865433446778774422225566777641011223333211111000122338986899999999998
Q gi|254780916|r 292 HVFRKD-L-YYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAV 369 (482)
Q Consensus 292 g~fr~d-L-y~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~ 369 (482)
=.=|-- | |.|| +|--.|.+ +.+.++. ....++++.++++. +---|..||=-|-++-.+
T Consensus 160 IQSRCAiLRyskl--------------sd~qiL~R--l~~v~k~---Ekv~yt~dgLeaii-fta~GDMRQalNnLQst~ 219 (333)
T KOG0991 160 IQSRCAILRYSKL--------------SDQQILKR--LLEVAKA---EKVNYTDDGLEAII-FTAQGDMRQALNNLQSTV 219 (333)
T ss_pred HHHHHHHHHHCCC--------------CHHHHHHH--HHHHHHH---HCCCCCCCHHHHHH-HHCCCHHHHHHHHHHHHH
T ss_conf 7734576532226--------------78999999--9999987---07887711477855-441661999999999874
No 312
>KOG1051 consensus
Probab=93.97 E-value=0.021 Score=36.68 Aligned_cols=108 Identities=19% Similarity=0.245 Sum_probs=57.4
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 111111222-2222222222222344320488732777436799999984267543321012346554210024331125
Q gi|254780916|r 137 CALDSLIAV-SPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDV 215 (482)
Q Consensus 137 ~~~~~LiG~-S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~ 215 (482)
...++.+|. ...++++.+-+.+--. +-| +|.|++|+||+.++..+-+.-.+.+-|-.--++..+.-+ +.+...|.+
T Consensus 183 gk~dPvigr~deeirRvi~iL~Rr~k-~NP-vLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~-~g~l~aGa~ 259 (898)
T KOG1051 183 GKLDPVIGRHDEEIRRVIEILSRKTK-NNP-VLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALD-FGSLVAGAK 259 (898)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCC-CCC-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEE-HHHCCCCCC
T ss_conf 68788658852889999999814678-996-698368777216899999876617888533455248987-000035864
Q ss_pred -CC-CCCCCCCCCCCCCCCCCC-EEEECCCCHHHH
Q ss_conf -55-532211100123446671-475166420018
Q gi|254780916|r 216 -DL-QTKNSAQFLGKFIEANGG-TIVLEEPDALPL 247 (482)
Q Consensus 216 -~~-~~~~~~~~~g~~~~a~~G-tl~l~ei~~L~~ 247 (482)
.+ +-+-.....-..+.+++| .||++|++.+-.
T Consensus 260 ~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg 294 (898)
T KOG1051 260 RRGEFEERLKELLKEVESGGGGVILFLGELHWLVG 294 (898)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEC
T ss_conf 21278899999999985479868998321432204
No 313
>COG1204 Superfamily II helicase [General function prediction only]
Probab=93.94 E-value=0.033 Score=35.20 Aligned_cols=105 Identities=14% Similarity=0.130 Sum_probs=55.8
Q ss_pred CCEEEECCCHHHHHHHHHH--HHHCCCEEEEE-CC-----------------HH-HHHHHCC------CCCEEEEE-CCC
Q ss_conf 8389986998999999999--99889889998-93-----------------79-9998608------99899997-854
Q gi|254780916|r 11 KRVLIIDKDDEQIKIIKDH--VESYGYDVFIV-NV-----------------SD-LSTISKI------QVNVIFLS-LIN 62 (482)
Q Consensus 11 ~rILIVDDd~~~~~~l~~~--L~~~G~~v~~a-~~-----------------~a-l~~l~~~------~~dlillD-~~m 62 (482)
+-|.||=.-.-..+....+ ++..|++|... ++ .+ +..+.++ ..++|++| +.|
T Consensus 78 k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~ 157 (766)
T COG1204 78 KVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHL 157 (766)
T ss_pred CEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCCCEEEECHHHHHHHHHCCCCHHHCCCEEEEEEEEE
T ss_conf 38999075999999999866688659779996488655533414588799746786676506753334016899942101
Q ss_pred CCCC-----HHHHHHHHHHHCCCCCEEEEECC-CCHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 6988-----89999999985789839999268-99999998885057432222222222222
Q gi|254780916|r 63 CEDD-----KENILKNIVDKIPIVPIIVQTTQ-DNIKILNCFLYNRISKFFLNLVSRKQLCD 118 (482)
Q Consensus 63 P~~d-----Glell~~i~~~~p~ipvIiiT~~-~~~~~~~~a~~~g~~d~l~KP~~~~~L~~ 118 (482)
-+.+ ...++.+++...+.+-+|-+|+. ++.+. -|-+.++..+ ..+|.+..+..
T Consensus 158 l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~e--vA~wL~a~~~-~~~~rp~~l~~ 216 (766)
T COG1204 158 LGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAEE--VADWLNAKLV-ESDWRPVPLRR 216 (766)
T ss_pred CCCCCCCCEEHHHHHHHHHHCCCEEEEEEEEECCCHHH--HHHHHCCCCC-CCCCCCCCCCC
T ss_conf 48756586402279888852755179887311688899--9998588355-56778862015
No 314
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=93.94 E-value=0.5 Score=26.86 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=19.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 432048873277743679999998
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIH 184 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH 184 (482)
.-..-|-|.|++|+||++++|.|-
T Consensus 35 ~~GE~v~iiG~nGsGKSTL~r~l~ 58 (281)
T PRK13633 35 KKGEFLVILGHNGSGKSTIAKHMN 58 (281)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 799899999999984999999997
No 315
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=93.93 E-value=0.077 Score=32.63 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=19.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 43204887327774367999999
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFI 183 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~i 183 (482)
..+..|+|.||+|+||+..++.|
T Consensus 92 ~~~QsIiiSGESGaGKTe~~K~i 114 (692)
T cd01385 92 KVNQCIVISGESGSGKTESTNFL 114 (692)
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
T ss_conf 99828999648989878999999
No 316
>KOG0735 consensus
Probab=93.93 E-value=0.058 Score=33.52 Aligned_cols=78 Identities=23% Similarity=0.266 Sum_probs=47.5
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 43204887327774367999999842-67543321012346554210024331125555322111001234466714751
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHES-GKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVL 239 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~-s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l 239 (482)
-....|||.|..|+||+.++++|-+. +.--...+..++|+++...-+|+.==--...|+.+ .+-.-..++|
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~--------~~~~PSiIvL 500 (952)
T KOG0735 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEA--------LWYAPSIIVL 500 (952)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECHHCCCHHHHHHHHHHHHHHHHH--------HHHCCCEEEE
T ss_conf 34661898679987776999999987515650699997522104204899999999999998--------8637808997
Q ss_pred CCCCHHH
Q ss_conf 6642001
Q gi|254780916|r 240 EEPDALP 246 (482)
Q Consensus 240 ~ei~~L~ 246 (482)
|+++.|-
T Consensus 501 Ddld~l~ 507 (952)
T KOG0735 501 DDLDCLA 507 (952)
T ss_pred CCHHHHH
T ss_conf 0503540
No 317
>TIGR02418 acolac_catab acetolactate synthase, catabolic; InterPro: IPR012782 Acetolactate synthase is a thiamin pyrophosphate-dependent enzyme that combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. It exists in two distinct forms that have different properties, though they are clearly related , . The biosynthetic form, found in plants, fungi and bacteria, is involved in the biosynthesis of branched-chain amino acids and contains non-catalytic FAD. The catabolic form is found only in some bacteria, participates in butanediol fermentation, and does not contain FAD. This entry represents the catabolic form of acetolactate synthase, generally found in species that posses acetolactate decarboxylase, which is often encoded in the same operon. The enzyme is thought to be a homotetramer, though this has not conclusively been shown. Each monomer consists of three distinct domains, designated, starting from the N-terminus, as alpha, beta and gamma . The core of the alpha and gamma domains is a six-stranded parallel beta sheet surrounded by alpha helices, while the the beta domain forms a double Rossman fold. The thiamin pyrophosphate cofactor has an unusual conformation that has not been seen in other enzymes using this cofactor, including the biosynthetic form of acetolactate synthase. The active site is located in a funnel at the dimer interface, bordered by residues from all three domains.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding.
Probab=93.89 E-value=0.025 Score=36.10 Aligned_cols=276 Identities=13% Similarity=0.157 Sum_probs=151.8
Q ss_pred HHHHHCCC-----EEEEEC---CHH-HH-HHH--CCCCCEEEEECCCCCCCHH-HHHHHHHHHCCCCCEEEEECCCC---
Q ss_conf 99998898-----899989---379-99-986--0899899997854698889-99999998578983999926899---
Q gi|254780916|r 28 DHVESYGY-----DVFIVN---VSD-LS-TIS--KIQVNVIFLSLINCEDDKE-NILKNIVDKIPIVPIIVQTTQDN--- 91 (482)
Q Consensus 28 ~~L~~~G~-----~v~~a~---~~a-l~-~l~--~~~~dlillD~~mP~~dGl-ell~~i~~~~p~ipvIiiT~~~~--- 91 (482)
..|++.+- +...+. +++ |+ .+. ..+|.|+|.= .=||.+=| +-|-.-.. ..| |||-|.|+=-
T Consensus 30 daLeD~~iGqkvP~lIv~RHEqNAaFMAqavGRlTGkpGV~lvT-SGPG~sNL~TGl~TAn~-EGD-PVvAiGG~VkR~D 106 (553)
T TIGR02418 30 DALEDKGIGQKVPELIVVRHEQNAAFMAQAVGRLTGKPGVALVT-SGPGVSNLVTGLLTANS-EGD-PVVAIGGQVKRAD 106 (553)
T ss_pred CHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEE-CCCCHHHHHHHHHEECC-CCC-HHHHCCCCCCHHH
T ss_conf 02207887754761541322145899999986305998659980-68881446743310156-776-3541167763244
Q ss_pred ------HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------C-CCCCCCC-------CCCC
Q ss_conf ------99999888505743222222222222222222222222222221----------1-1111112-------2222
Q gi|254780916|r 92 ------IKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVVPSQENE----------H-CALDSLI-------AVSP 147 (482)
Q Consensus 92 ------~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~~~~~~~----------~-~~~~~Li-------G~S~ 147 (482)
..+=.-++..-+++|=.---+++.|-+.+.+|.|-...-+.-.. . ......| -.++
T Consensus 107 ~~k~tHQS~d~valf~piTKYSaEvqd~~~lsE~vaNAfR~A~~Gk~GAaFvS~PQDV~~~kp~s~~~i~~~~~P~~Gaa 186 (553)
T TIGR02418 107 LLKLTHQSMDNVALFRPITKYSAEVQDPDALSEVVANAFRLAESGKPGAAFVSLPQDVVDSKPVSVKAIPAVAAPKLGAA 186 (553)
T ss_pred HHHHHHCCHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCC
T ss_conf 22233011245777078020134566676547899999999971489662550573214887555345212214678887
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCC-CCCCC-CCCCCCHHHHHCCCCCCCCCCCCC
Q ss_conf 2222222222234432048873277743679999998426754332101-23465-542100243311255553221110
Q gi|254780916|r 148 AMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFI-VNCGM-IDQDKIEKFLFGDVDLQTKNSAQF 225 (482)
Q Consensus 148 ~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~-v~c~~-~~~~~~e~~lFG~~~~~~~~~~~~ 225 (482)
+-.++-..++++.+...|||+.|-.|+- .-.++|+|.+-+...-|+|. ...|+ ++.|+...++||..+-|..-.-+.
T Consensus 187 ~~~~i~~~~~~I~~Ak~PVlLlG~~aS~-~~~~~Av~rll~k~~LPvVeTfQgAG~vsrele~~TFfGRvGLFrNQ~GD~ 265 (553)
T TIGR02418 187 ADADIDEVAEAIKNAKLPVLLLGLRASS-QETTEAVRRLLKKTQLPVVETFQGAGVVSRELEDETFFGRVGLFRNQPGDK 265 (553)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCC-HHHHHHHHHHHCCCCCCCEEEEECCEEECHHCCCCCCEECCCCCCCCCCHH
T ss_conf 3889999999998319966985047888-899999999864606882140200513110024565210011445870025
Q ss_pred CCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 01234466714751664200188999888877642001123553212343156521433211111123337999886543
Q gi|254780916|r 226 LGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVF 305 (482)
Q Consensus 226 ~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~ 305 (482)
||++|+ |+|- |+.=|. +|+|-.=|+ ..+++||..= ...++ +
T Consensus 266 --LLk~aD---LvIt-IGYdPI-------------EYep~~WN~--~~~~~Iv~iD-----~~~A~-------------i 306 (553)
T TIGR02418 266 --LLKQAD---LVIT-IGYDPI-------------EYEPRNWNS--ELDATIVHID-----VEPAE-------------I 306 (553)
T ss_pred --HHHHCC---EEEE-ECCCCE-------------ECCHHHCCC--CCCCEEEEEE-----EEEEE-------------H
T ss_conf --775669---7898-338850-------------307554477--8872068973-----14421-------------2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3446778774422225566777641011223333211111000122
Q gi|254780916|r 306 LINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTK 351 (482)
Q Consensus 306 ~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~ 351 (482)
..+.=|=||=-.||+.=++++.++.... ..|++++.+.|..
T Consensus 307 ~~~yqP~~eLvGdia~tl~~l~~~~~~~-----~~L~~~~~~~L~~ 347 (553)
T TIGR02418 307 DNNYQPDLELVGDIASTLDLLAERVEGF-----YELPEDAQDILED 347 (553)
T ss_pred HHCCCCCHHHHCCHHHHHHHHHHHHCCC-----CCCCHHHHHHHHH
T ss_conf 0036861443257277799995862466-----1058889999999
No 318
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=93.86 E-value=0.04 Score=34.64 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=18.4
Q ss_pred EEEECCCCCHHHHHHHHHHHC
Q ss_conf 887327774367999999842
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIHES 186 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH~~ 186 (482)
|.|.|++||||+++|+.|=..
T Consensus 3 I~ISGpPGSGktTvA~~lA~~ 23 (173)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEK 23 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 887358968647899999986
No 319
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.85 E-value=0.46 Score=27.18 Aligned_cols=96 Identities=14% Similarity=0.136 Sum_probs=49.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC------C----CCCCCHHHHHCCCCCCC-CCCCCC--CC
Q ss_conf 43204887327774367999999842675433210123465------5----42100243311255553-221110--01
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGM------I----DQDKIEKFLFGDVDLQT-KNSAQF--LG 227 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~------~----~~~~~e~~lFG~~~~~~-~~~~~~--~g 227 (482)
....-.|+.|+.|+||+.+|+.+-..-- ...|--.-.|+. + .+|... .-..++-+ +-..-| ..
T Consensus 21 r~~HA~L~~G~~G~Gk~~la~~~a~~ll-C~~~~~~~~Cg~C~sC~l~~~g~HPD~~~---i~~~~~k~I~vd~IR~l~~ 96 (324)
T PRK06871 21 RGHHALLFKADSGLGTEQLIRALAQWLM-CQAPGDEQPCGQCHSCHLFQAGNHPDFHI---LEPIDGKDIGVDQVREINE 96 (324)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHCCCCCCEEE---EECCCCCCCCHHHHHHHHH
T ss_conf 9543787689999789999999999982-89999999888898999997389998799---8467888788999999999
Q ss_pred CC----CCCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 23----4466714751664200188999888877642
Q gi|254780916|r 228 KF----IEANGGTIVLEEPDALPLAVQGRIYNFIETG 260 (482)
Q Consensus 228 ~~----~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~ 260 (482)
.+ .+.+.-.+++++.+.|....+..||..|||.
T Consensus 97 ~~~~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEP 133 (324)
T PRK06871 97 KVSQFAQQGGNKVVYIQGAERLTEAAANALLKTLEEP 133 (324)
T ss_pred HHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf 9864622059669997588885799999999983389
No 320
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=93.71 E-value=0.04 Score=34.68 Aligned_cols=96 Identities=17% Similarity=0.164 Sum_probs=52.8
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCC--CCCCCCCCCCCCCC----------------------CCCCC
Q ss_conf 2222222234432048873277743679999998426--75433210123465----------------------54210
Q gi|254780916|r 151 QVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESG--KRAFFPFFIVNCGM----------------------IDQDK 206 (482)
Q Consensus 151 ~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s--~r~~~~fi~v~c~~----------------------~~~~~ 206 (482)
.+.+.+.---..+.-+-|.|-+|+||+++|+.+=.+- +-..| =|.+|.-. ++..-
T Consensus 488 ~~L~di~L~I~~n~k~tiVGmSGSGKsTLaKLLV~FfePQ~~sG-~I~Lng~~l~~iD~h~LRq~INYlPQeP~IF~GsI 566 (710)
T TIGR01193 488 NVLSDISLTIKKNEKITIVGMSGSGKSTLAKLLVGFFEPQAESG-EILLNGISLKDIDRHELRQFINYLPQEPYIFSGSI 566 (710)
T ss_pred CCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCC-EEEECCCCHHHCCHHHHCCCCCCCCCCCEEECCCH
T ss_conf 32026423650785489973679748999987520358998877-36527824453373444123355688784512317
Q ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 02433112555532211100123446671475166420018899988
Q gi|254780916|r 207 IEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRI 253 (482)
Q Consensus 207 ~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~L 253 (482)
+|..|.|.+.+.+...-.+.=.+.| .=++|+.||.-.|+.|
T Consensus 567 LeNLLlGak~~~~~~~i~~A~~iAE------Ik~DIe~mp~Gy~T~L 607 (710)
T TIGR01193 567 LENLLLGAKENVSQDEILKAVEIAE------IKDDIEKMPLGYQTEL 607 (710)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHCC------CHHHHHHCCCCCCEEE
T ss_conf 8876503789989899998840201------1245831888766000
No 321
>COG3910 Predicted ATPase [General function prediction only]
Probab=93.69 E-value=0.18 Score=30.05 Aligned_cols=37 Identities=32% Similarity=0.450 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCCCCCCCCCEEE-EEECCCCCHHHHHHHHHHH
Q ss_conf 2222222222222234432048-8732777436799999984
Q gi|254780916|r 145 VSPAMIQVVDLARKAGDCAIPI-MIQGEFGVGKKRLSRFIHE 185 (482)
Q Consensus 145 ~S~~m~~v~~~i~~~a~~~~~v-li~Ge~GtGK~~~A~~iH~ 185 (482)
+=|+|+.+...+ ....|| .|+||.|+||.++-.+|-.
T Consensus 22 slPa~r~l~~~L----eF~apIT~i~GENGsGKSTLLEaiA~ 59 (233)
T COG3910 22 SLPAFRHLEERL----EFRAPITFITGENGSGKSTLLEAIAA 59 (233)
T ss_pred CCHHHHHHHHHC----CCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 356777554422----34686489976898657889999996
No 322
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=93.67 E-value=0.048 Score=34.08 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=18.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 432048873277743679999998
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIH 184 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH 184 (482)
..+..|+|.||+|+||+..++.|=
T Consensus 84 ~~nQsIIiSGESGAGKTEstK~im 107 (767)
T cd01386 84 RRDQSIIFLGRSGAGKTTSCKHAL 107 (767)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 899579995589888889999999
No 323
>PRK06762 hypothetical protein; Provisional
Probab=93.60 E-value=0.055 Score=33.66 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=31.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 488732777436799999984267543321012346554210024331125
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDV 215 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~ 215 (482)
=|.|.|.+|+||+.+|+.+|..-.+ +|+-++.+.+-.++.-.+
T Consensus 4 LIiiRGNSgSGKtT~Ak~L~~~~G~--------g~lLvsQD~vRR~mLr~k 46 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLGR--------GTLLVSQDVVRRDMLRVK 46 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC--------CCEEEEHHHHHHHHHHCC
T ss_conf 8999788888878999999998688--------857853758999984055
No 324
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=93.52 E-value=0.23 Score=29.26 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=30.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 048873277743679999998426754332101234655421002
Q gi|254780916|r 164 IPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIE 208 (482)
Q Consensus 164 ~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e 208 (482)
.=|+|+|+.|+||++++..+-..-.-..| =|-+|..-++.+..|
T Consensus 350 elvFliG~NGsGKST~~~LLtGL~~PqsG-~I~ldg~pV~~e~le 393 (546)
T COG4615 350 ELVFLIGGNGSGKSTLAMLLTGLYQPQSG-EILLDGKPVSAEQLE 393 (546)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCC-CEEECCCCCCCCCHH
T ss_conf 38999888996388999999706688888-266789348844789
No 325
>pfam05707 Zot Zonular occludens toxin (Zot). This family consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophages present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers
Probab=93.48 E-value=0.093 Score=32.06 Aligned_cols=78 Identities=17% Similarity=0.163 Sum_probs=41.1
Q ss_pred EEEECCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC-CCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 8873277743679999998426-75433210123465542100243311255553-221110012344667147516642
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIHESG-KRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQT-KNSAQFLGKFIEANGGTIVLEEPD 243 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH~~s-~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~-~~~~~~~g~~~~a~~Gtl~l~ei~ 243 (482)
.||+|-+|+||++.|=..|-.- -.++.| |..|..++..+.+ .+.||...... .......-+...-+|+-+++||.+
T Consensus 3 ~litG~pGsGKS~~aV~~~i~~al~~GR~-V~tNI~gL~~~~~-~~~~~~~~~~~~~~~~~~~~w~~~p~g~liViDE~~ 80 (183)
T pfam05707 3 YLITGKPGSGKTLEAVSYHILPALKKGRK-VITNIDGLNLERF-PKVFGEDVRERLEDIGYMDPWRTYPKGALLVIDEAQ 80 (183)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCE-EEECCCCCCCHHC-CCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCH
T ss_conf 99935999962299999999999878998-9987865352210-122344454320000122233149998799998976
Q ss_pred HH
Q ss_conf 00
Q gi|254780916|r 244 AL 245 (482)
Q Consensus 244 ~L 245 (482)
..
T Consensus 81 ~~ 82 (183)
T pfam05707 81 TW 82 (183)
T ss_pred HH
T ss_conf 55
No 326
>PRK05637 anthranilate synthase component II; Provisional
Probab=93.43 E-value=0.39 Score=27.69 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=54.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEECC-HHHHHHHCCCCCEEEEEC--CCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 883899869989999999999988988999893-799998608998999978--54698889999999985789839999
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNV-SDLSTISKIQVNVIFLSL--INCEDDKENILKNIVDKIPIVPIIVQ 86 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~-~al~~l~~~~~dlillD~--~mP~~dGlell~~i~~~~p~ipvIii 86 (482)
++|||+||...++-..+...|+..|++|.+..+ ..++.+....||.|++.= -.|...|. .++-++.....+||+=+
T Consensus 1 M~~ILlIDnyDSFT~Nl~~~l~~~g~~v~V~rn~~~~~~~~~~~pd~ivlSPGPg~P~d~g~-~~~~~~~~~~~iPILGI 79 (208)
T PRK05637 1 MTHVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPVETILAANPDLICLSPGPGYPADAGN-MMALIERTLGQIPLLGI 79 (208)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCEEEECCCCCCHHHCCC-HHHHHHHHHCCCCEEEH
T ss_conf 97799994889759999999986799079996999999998519995999999999577757-49999997356982211
Q ss_pred E
Q ss_conf 2
Q gi|254780916|r 87 T 87 (482)
Q Consensus 87 T 87 (482)
-
T Consensus 80 C 80 (208)
T PRK05637 80 C 80 (208)
T ss_pred H
T ss_conf 4
No 327
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=93.41 E-value=0.65 Score=26.08 Aligned_cols=88 Identities=15% Similarity=0.114 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHCCCEEEEECC----HHH-HHHHCCCCCEEEEECCCCCCC-HHHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 9999999999988988999893----799-998608998999978546988-8999999998578983999926899999
Q gi|254780916|r 21 EQIKIIKDHVESYGYDVFIVNV----SDL-STISKIQVNVIFLSLINCEDD-KENILKNIVDKIPIVPIIVQTTQDNIKI 94 (482)
Q Consensus 21 ~~~~~l~~~L~~~G~~v~~a~~----~al-~~l~~~~~dlillD~~mP~~d-Glell~~i~~~~p~ipvIiiT~~~~~~~ 94 (482)
.-...++..|++.||+|..... ..+ +.++..+||+|-...+.+... ..++++.+|+..|++++|+--.|.+...
T Consensus 3 LGl~ylaa~L~~~G~~v~~~d~~~~~~~~e~~~~~~~pdvvg~s~~~~~~~~~~~~~~~~k~~~p~~~iv~GG~h~t~~p 82 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATFFP 82 (127)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCH
T ss_conf 79999999999789957998578762039999864996999999768899999999999999789978998598745499
Q ss_pred HHHHHHCCCCCCCCC
Q ss_conf 998885057432222
Q gi|254780916|r 95 LNCFLYNRISKFFLN 109 (482)
Q Consensus 95 ~~~a~~~g~~d~l~K 109 (482)
...+.....||+..
T Consensus 83 -~~~l~~~~~D~vv~ 96 (127)
T cd02068 83 -EEILEEPGVDFVVI 96 (127)
T ss_pred -HHHHHCCCCCEEEE
T ss_conf -99970758778996
No 328
>PRK07261 topology modulation protein; Provisional
Probab=93.25 E-value=0.079 Score=32.55 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=26.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 048873277743679999998426754332101234
Q gi|254780916|r 164 IPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNC 199 (482)
Q Consensus 164 ~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c 199 (482)
+-|+|.|-+|+||+++||.|.+. -+-|++.+|.
T Consensus 1 MrI~IiG~sGsGKSTlAr~L~~~---~~ip~~~LD~ 33 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARFLGQH---YNCPVLHLDQ 33 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH---HCCCEEEECC
T ss_conf 98999889998689999999998---7979797022
No 329
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.21 E-value=0.38 Score=27.70 Aligned_cols=159 Identities=15% Similarity=0.181 Sum_probs=72.1
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHH
Q ss_conf 88732777436799999984267543321012346554210024331125555322111001234466714751664200
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDAL 245 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L 245 (482)
|=|.|-+|+||+++|+.|++.-+ +|.-+..+.+ .-..+ -+.....|..=.|..+.+
T Consensus 2 IgIaG~S~SGKTTla~~L~~~l~---------~~~iI~qDdy-----------Yk~~~----~~~~~~~~~~NfDhP~Ai 57 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILP---------NCCVIHQDDF-----------FKPED----EIPVDENGFKQWDVLEAL 57 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHCC---------CCEEECCCCC-----------CCCCC----CCCHHHCCCCCCCCCCCC
T ss_conf 89968888759999999999879---------9889715446-----------78843----276213057687670120
Q ss_pred HHHHHHHHHHHHHHHH-CC-CCCCC----CCCC-------CCCEEEEECC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1889998888776420-01-12355----3212-------3431565214-33211111123337999886543344677
Q gi|254780916|r 246 PLAVQGRIYNFIETGK-IE-FFDSR----GAIR-------LDVRLIFLTE-KNLLPQVKSHVFRKDLYYRISVFLINIST 311 (482)
Q Consensus 246 ~~~~Q~~Ll~~l~~~~-~~-~~g~~----~~~~-------~~~RiIa~t~-~~L~~~~~~g~fr~dLy~rL~~~~i~iPp 311 (482)
..+.-..-|+.|.++. +. ++-+. .+.. ...|---... .+..-.+-+|.| ..+-|.
T Consensus 58 D~~~l~~~L~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~p~~iiIvEG~l-----------l~~~~~ 126 (187)
T cd02024 58 DMEAMMSTLDYWRETGHFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFL-----------LYNYKP 126 (187)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEEEECHH-----------HCCCHH
T ss_conf 589999999999948976431013343566775674102221120001146896499991778-----------719899
Q ss_pred HHHHHHHHHHHHH-----HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 8774422225566-----777641011223333211111000122338986899
Q gi|254780916|r 312 LRSRSEDIPWLVH-----FFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQE 360 (482)
Q Consensus 312 LReR~eDI~~L~~-----~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvRE 360 (482)
||+.- |+...++ .+..+..+..-....+++++-...+.++-||+=+.-
T Consensus 127 lr~l~-DlkiFvd~~~d~~l~RR~~Rd~~~~~~g~~~D~~~yf~~~V~P~y~k~ 179 (187)
T cd02024 127 LVDLF-DIRYFLRVPYETCKRRREARTGYVTLEGFWPDPPGYFDGHVWPMYLKH 179 (187)
T ss_pred HHHHC-CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCEECHHHHHH
T ss_conf 99863-967999699999999975257854268478999526525041538988
No 330
>PTZ00014 myosin A; Provisional
Probab=93.10 E-value=0.091 Score=32.13 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=21.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 4320488732777436799999984
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHE 185 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~ 185 (482)
..+..|+|.||+|+||+-.++.|=+
T Consensus 182 ~~nQsIiISGESGAGKTEstK~im~ 206 (821)
T PTZ00014 182 KYSQTIIVSGESGAGKTEATKQMMR 206 (821)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 9981699982798997899999999
No 331
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=93.04 E-value=0.61 Score=26.27 Aligned_cols=119 Identities=9% Similarity=0.147 Sum_probs=57.9
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHH
Q ss_conf 88732777436799999984267543321012346554210024331125555322111001234466714751664200
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDAL 245 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L 245 (482)
|++.|..|+||+.+.+.++........|-+-+|...+....+.-+++-- +|...-..--.-.+..|++-.+++|--+.-
T Consensus 2 IlilGl~~sGKTtil~~l~~~~~~~~~pT~G~~~~~i~~~~~~l~iwD~-gG~~~~r~~w~~Yy~~~~~iIfVvDssd~~ 80 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDV-GGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEEEEC-CCCCCCCHHHHHHCCCCCEEEEEEECCHHH
T ss_conf 9999989998899999995799689778688166999989889999989-997244636787555762799999863067
Q ss_pred HH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 18-89998888776420011235532123431565214332111111233
Q gi|254780916|r 246 PL-AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVF 294 (482)
Q Consensus 246 ~~-~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~f 294 (482)
.. +.+..|-.++++... ...+ =+|.+...|+...+.....
T Consensus 81 ~~~ea~~~l~~ll~~~~~------~~~p---iLIlaNK~Dl~~~~~~~ei 121 (169)
T cd04158 81 RVSEAHSELAKLLTEKEL------RDAL---LLIFANKQDVAGALSVEEM 121 (169)
T ss_pred HHHHHHHHHHHHHHHHHH------CCCE---EEEEEECCCCCCCCCHHHH
T ss_conf 799999999999712753------7984---9999735567779899999
No 332
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=93.01 E-value=0.13 Score=31.05 Aligned_cols=122 Identities=13% Similarity=0.182 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCC---CCCCCEEEEEECCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCCCC-CCCCHH-------HHH
Q ss_conf 222222222222---3443204887327774367999999842---67543321012346554-210024-------331
Q gi|254780916|r 147 PAMIQVVDLARK---AGDCAIPIMIQGEFGVGKKRLSRFIHES---GKRAFFPFFIVNCGMID-QDKIEK-------FLF 212 (482)
Q Consensus 147 ~~m~~v~~~i~~---~a~~~~~vli~Ge~GtGK~~~A~~iH~~---s~r~~~~fi~v~c~~~~-~~~~e~-------~lF 212 (482)
|..+..++++.. ......-.||.|+.|+||+.+|+.+-.. ......| |+.-. ..++.+ .++
T Consensus 6 PWl~~~~~~l~~~~~~~rl~HA~L~~g~~G~Gk~~la~~la~~LlC~~~~~~~-----Cg~C~sC~l~~~g~HPD~~~i~ 80 (319)
T PRK06090 6 PWLVPVWQNWKSGLDAERIPGALLLQSDEGLGVESLVELFSHALLCQNYQSEA-----CGFCHSCELMKSGNHPDLHVIK 80 (319)
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC-----CCCCHHHHHHHCCCCCCCEEEE
T ss_conf 88379999999999869963067667999857999999999998089999998-----8778779998758999823661
Q ss_pred CCCCCCCCCCCC-C-C-CCC-CCC---CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 125555322111-0-0-123-446---6714751664200188999888877642001123553212343156521433
Q gi|254780916|r 213 GDVDLQTKNSAQ-F-L-GKF-IEA---NGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKN 284 (482)
Q Consensus 213 G~~~~~~~~~~~-~-~-g~~-~~a---~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~ 284 (482)
-++++-+-...+ | . -.+ ..+ ..-.+++++.+.|....+..||..|||. +.++-+|..|+..
T Consensus 81 pe~~~k~I~vd~IR~l~~~~~~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEP-----------p~~t~fiL~t~~~ 148 (319)
T PRK06090 81 PEKEGKSITVEQIRQCNRLAQESSQLGGYRLFVIEPADAMNESASNALLKTLEEP-----------APNCLFLLVTHNQ 148 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCC-----------CCCEEEEEEECCH
T ss_conf 2335676879999999999754521069369998144434999999999984289-----------9883899876851
No 333
>PRK05657 RNA polymerase sigma factor RpoS; Validated
Probab=92.99 E-value=0.2 Score=29.76 Aligned_cols=49 Identities=29% Similarity=0.455 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHCC---CHHHHHHHHCCCH-----------HHHHHHHHHHCCCCCCC
Q ss_conf 9999999999999998287---2789997848998-----------89999999818881449
Q gi|254780916|r 434 RLSDIEKEIIGLAMKLYRA---QMSEVARRLGIGR-----------STLYRKIREYNIEVDSL 482 (482)
Q Consensus 434 ~l~e~E~~~I~~aL~~~~G---n~~~aA~~LGIsR-----------~tL~rKlk~~gi~~d~~ 482 (482)
.|.+-|+.+|..-+-..++ ...+.|+.+|||| ..|++.+++-||+.|++
T Consensus 265 ~L~~REr~II~~RfGL~~~e~~TL~EIg~~lgvSRERVRQIE~~AL~KLR~~l~~~~l~~~~~ 327 (328)
T PRK05657 265 ELNDKQREVIERRFGLNGYEAATLEEVAREIGLTRERVRQIQVEALRRLREILQTQGLSKDAL 327 (328)
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHC
T ss_conf 699999999999808899896059999989697999999999999999879999869973424
No 334
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.95 E-value=0.035 Score=35.09 Aligned_cols=50 Identities=22% Similarity=0.258 Sum_probs=34.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 11111122222222222222223443204887327774367999999842
Q gi|254780916|r 137 CALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES 186 (482)
Q Consensus 137 ~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~ 186 (482)
...++++.....-....+.++.+.....+++|.|.+|+||+++.+++-..
T Consensus 118 ~tl~dlv~~g~~t~~~~~~L~~aV~~r~nilVsGgTGSGKTTllnaL~~~ 167 (323)
T PRK13833 118 IPLDDYVRSKVMTEAQASTIRSAISSRLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred CCHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 99999987699999999999999981896899917777568999999986
No 335
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=92.93 E-value=0.14 Score=30.90 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=19.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 43204887327774367999999
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFI 183 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~i 183 (482)
..+..|+|.||+|+||+..++.|
T Consensus 90 ~~~QsIiisGESGaGKTes~K~i 112 (677)
T smart00242 90 KENQSIIISGESGAGKTENTKKI 112 (677)
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
T ss_conf 99927999688988877999999
No 336
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.90 E-value=0.28 Score=28.64 Aligned_cols=107 Identities=20% Similarity=0.164 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH--HHHHCCCCCCCCCCCCCCCC--
Q ss_conf 22222234432048873277743679999998426754332101234655421002--43311255553221110012--
Q gi|254780916|r 153 VDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIE--KFLFGDVDLQTKNSAQFLGK-- 228 (482)
Q Consensus 153 ~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e--~~lFG~~~~~~~~~~~~~g~-- 228 (482)
.+.+.--.....-+.|.|++|+||+++.+.|-..-....+ -|.++...+...... ..-.|......|...++..+
T Consensus 15 l~~i~~~i~~Ge~~~i~G~nGaGKSTLl~~l~gl~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v~QLSgGqkqrv~iA~ 93 (157)
T cd00267 15 LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSG-EILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALAR 93 (157)
T ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 8211789879979999878899989999999588479962-899999999979999999406087668869999999999
Q ss_pred CCCCCCCEEEECCCCH-HHHHHHHHHHHHHHHH
Q ss_conf 3446671475166420-0188999888877642
Q gi|254780916|r 229 FIEANGGTIVLEEPDA-LPLAVQGRIYNFIETG 260 (482)
Q Consensus 229 ~~~a~~Gtl~l~ei~~-L~~~~Q~~Ll~~l~~~ 260 (482)
--..+--.++|||... |.+..+..+...+.+-
T Consensus 94 al~~~p~ililDEPtsgLD~~~~~~l~~~i~~l 126 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLREL 126 (157)
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 997099999996987668999999999999999
No 337
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=92.89 E-value=0.66 Score=26.05 Aligned_cols=120 Identities=12% Similarity=0.192 Sum_probs=58.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCC----CCCCCCCCCCCE
Q ss_conf 4320488732777436799999984267543321012346554210024331125555322111----001234466714
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQ----FLGKFIEANGGT 236 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~----~~g~~~~a~~Gt 236 (482)
.-..-|++.|..|+||+.+-+.++.......-|-+-+|...+....++-.++- ++...+ -.-.+..|++-.
T Consensus 11 kk~~kililG~~~~GKTsil~~l~~~~~~~~~pTvg~~~~~~~~~~~~l~iwD-----~~Gqe~~r~l~~~Yy~~a~~iI 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWD-----VGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEE-----CCCCCCCCHHHHHHCCCCCEEE
T ss_conf 88899999988999989999999659977757978810799998989999998-----9998545536777557761899
Q ss_pred EEECCCCHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 75166420018-89998888776420011235532123431565214332111111233
Q gi|254780916|r 237 IVLEEPDALPL-AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVF 294 (482)
Q Consensus 237 l~l~ei~~L~~-~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~f 294 (482)
+++|--..-+. +.+..|..++++... +..+ =+|.+...|+...+.....
T Consensus 86 fVvD~sd~~~~~~~~~~l~~~l~~~~~------~~~p---iLil~NK~Dl~~~~~~~ei 135 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDEL------RDAV---ILVFANKQDLPDAMKAAEI 135 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHHCCHHH------CCCE---EEEEEECCCCCCCCCHHHH
T ss_conf 998668778999999999999631531------6986---9999845667678899999
No 338
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=92.88 E-value=0.66 Score=26.05 Aligned_cols=79 Identities=20% Similarity=0.189 Sum_probs=55.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECC--CCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 8838998699899999999999889889998937--999986089989999785--469888999999998578983999
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLI--NCEDDKENILKNIVDKIPIVPIIV 85 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~--mP~~dGlell~~i~~~~p~ipvIi 85 (482)
+++||+||...++-..|...|...|++|.+..+. ....++...||.|++.=- -|..-|. .++.|++....+|++-
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G~-~~~~i~~~~~~~PiLG 79 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGI-SLELIRRFAGRIPILG 79 (191)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCH-HHHHHHHHCCCCCEEE
T ss_conf 956999977442499999999973993499988965877886049998998489979377361-8999998608998899
Q ss_pred EE-CC
Q ss_conf 92-68
Q gi|254780916|r 86 QT-TQ 89 (482)
Q Consensus 86 iT-~~ 89 (482)
+- ||
T Consensus 80 VCLGH 84 (191)
T COG0512 80 VCLGH 84 (191)
T ss_pred ECCCH
T ss_conf 87437
No 339
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=92.86 E-value=0.14 Score=30.91 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=19.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 432048873277743679999998
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIH 184 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH 184 (482)
..+..|+|.||+|+||+..++.|=
T Consensus 84 ~~nQsIiisGESGaGKTe~~K~il 107 (674)
T cd01378 84 NENQCVIISGESGAGKTEAAKKIM 107 (674)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 999379996788788889999999
No 340
>PRK08118 topology modulation protein; Reviewed
Probab=92.81 E-value=0.093 Score=32.06 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=25.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 48873277743679999998426754332101234
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNC 199 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c 199 (482)
-|+|.|.+|+||+++|+.|-+. -+-|++.+|.
T Consensus 3 rI~IiG~~GsGKSTlAr~L~~~---~~ip~~~LD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK---LNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH---HCCCEEECCC
T ss_conf 7999889998799999999998---8969796443
No 341
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.79 E-value=0.045 Score=34.26 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=35.5
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 22222222344320488732777436799999984267543321012
Q gi|254780916|r 151 QVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIV 197 (482)
Q Consensus 151 ~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v 197 (482)
++.+.++.+.....+++|.|++|+||+++++++-..-+. +..+|+|
T Consensus 148 ~~~~fL~~aV~~r~NilI~G~TgSGKTTll~aL~~~ip~-~eRiitI 193 (332)
T PRK13900 148 KIKEFLEHAVISKKNIIISGGTSTGKTTFTNAALREIPA-IERLITV 193 (332)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCC-CCCEEEE
T ss_conf 799999999864871999888898899999999835895-3535663
No 342
>PRK02362 ski2-like helicase; Provisional
Probab=92.78 E-value=0.092 Score=32.08 Aligned_cols=53 Identities=9% Similarity=0.072 Sum_probs=32.8
Q ss_pred CCCCEEEEE-CCCCC-CC-H--H-HHHHHHHHHCCCCCEEEEECC-CCHHHHHHHHHCCCCC
Q ss_conf 899899997-85469-88-8--9-999999985789839999268-9999999888505743
Q gi|254780916|r 51 IQVNVIFLS-LINCE-DD-K--E-NILKNIVDKIPIVPIIVQTTQ-DNIKILNCFLYNRISK 105 (482)
Q Consensus 51 ~~~dlillD-~~mP~-~d-G--l-ell~~i~~~~p~ipvIiiT~~-~~~~~~~~a~~~g~~d 105 (482)
...++|+.| +.|=+ .+ | + .++.+++...|++.+|.+||. ++.+... -+.++.-
T Consensus 136 ~~v~lVViDEiHli~d~~RG~~lE~~lskl~~~~~~iqiIgLSATl~N~~~la--~WL~a~~ 195 (736)
T PRK02362 136 DDISCVVADEVHLIDSPNRGPTLEVTLAKLRRLNPDMQVIALSATIGNADELA--AWLDAEL 195 (736)
T ss_pred HCCCEEEEECCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH--HHHCCCC
T ss_conf 50898998176786688724999999999973387743898624558999999--9838862
No 343
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=92.76 E-value=0.18 Score=30.06 Aligned_cols=102 Identities=19% Similarity=0.170 Sum_probs=53.2
Q ss_pred HHHHHHHH-CCCCCEEEEECCC-CHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999985-7898399992689-99999988850-574322222222222222222222222222222111111112222
Q gi|254780916|r 70 ILKNIVDK-IPIVPIIVQTTQD-NIKILNCFLYN-RISKFFLNLVSRKQLCDSIICALREGVVPSQENEHCALDSLIAVS 146 (482)
Q Consensus 70 ll~~i~~~-~p~ipvIiiT~~~-~~~~~~~a~~~-g~~d~l~KP~~~~~L~~~i~~al~~~~~~~~~~~~~~~~~LiG~S 146 (482)
..+.+.+. ..++|.+++|..- -.+.+.+.++. +..- |.-|....++...+..-+....++.. ..|..+-++
T Consensus 71 ~~~~~~~l~~~~~P~iIvt~~~~~~~~l~~~a~~~~ipl-l~t~~~ts~~i~~l~~~L~~~lAp~~-~~HGvlvdV---- 144 (308)
T PRK05428 71 RKERLKKLFSFEPPCIIVTRGLEPPEELLEAAKEAGIPL-LRTKLSTTRLISKLTNYLDRKLAPRT-SVHGVLVDV---- 144 (308)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCE-EECCCCHHHHHHHHHHHHHHHCCCCE-EEEEEEEEE----
T ss_conf 999999985769978999799999999999999849958-98287599999999999998608747-886589999----
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 22222222222234432048873277743679999998426754332101
Q gi|254780916|r 147 PAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFI 196 (482)
Q Consensus 147 ~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~ 196 (482)
...=|||+|++|.||+-+|=.+=..+ +.||+
T Consensus 145 ---------------~G~GVLI~G~SGiGKSE~aLeLI~RG----HrLVA 175 (308)
T PRK05428 145 ---------------YGIGVLITGESGIGKSETALELIKRG----HRLVA 175 (308)
T ss_pred ---------------EEEEEEEECCCCCCHHHHHHHHHHCC----CEEEE
T ss_conf ---------------44489997588888128999999849----93670
No 344
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=92.74 E-value=0.34 Score=28.05 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=29.2
Q ss_pred HHHHCCCCCEEEEECCCCCCC------HHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 998608998999978546988------89999999985789839999268
Q gi|254780916|r 46 STISKIQVNVIFLSLINCEDD------KENILKNIVDKIPIVPIIVQTTQ 89 (482)
Q Consensus 46 ~~l~~~~~dlillD~~mP~~d------Glell~~i~~~~p~ipvIiiT~~ 89 (482)
++.-.++||+.+.|-----.| =+++++.+++.. .+.+++||-.
T Consensus 169 AMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~-gMa~lfITHD 217 (534)
T COG4172 169 AMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAEL-GMAILFITHD 217 (534)
T ss_pred HHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH-CCEEEEEECC
T ss_conf 999738998686169852200305999999999999974-9579999442
No 345
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=92.70 E-value=0.12 Score=31.40 Aligned_cols=85 Identities=14% Similarity=0.054 Sum_probs=51.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
Q ss_conf 11122222222222222223443204887327774367999999842675433210123465542100243311255553
Q gi|254780916|r 140 DSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQT 219 (482)
Q Consensus 140 ~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~ 219 (482)
+-+.|+...=+.|...+.---..-.=|+++|++||||+++=-.|=..-.-.+|.+- .+..+|.|-.+..-
T Consensus 8 nHyyG~G~~rkQvL~di~L~i~~GEiViltGPSGSGKTTLLtLiG~LR~~Q~G~L~----------vlg~~L~ga~~~~l 77 (220)
T TIGR02982 8 NHYYGEGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLK----------VLGQELKGASKKEL 77 (220)
T ss_pred CCEECCCCCCCEEECCCCEEECCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEE----------EECCHHCCCCHHHH
T ss_conf 41114687421001276317717647984378898468899988762565556047----------82201026788899
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 221110012344667
Q gi|254780916|r 220 KNSAQFLGKFIEANG 234 (482)
Q Consensus 220 ~~~~~~~g~~~~a~~ 234 (482)
...-+++|.+=+++|
T Consensus 78 ~~~RR~iGyIFQ~HN 92 (220)
T TIGR02982 78 VQVRRNIGYIFQAHN 92 (220)
T ss_pred HHHHHHCCCEECCCH
T ss_conf 999876391441200
No 346
>KOG1970 consensus
Probab=92.60 E-value=0.32 Score=28.28 Aligned_cols=20 Identities=20% Similarity=0.539 Sum_probs=16.4
Q ss_pred EEEECCCCCHHHHHHHHHHH
Q ss_conf 88732777436799999984
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIHE 185 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH~ 185 (482)
.||+|++|+||++.-+.+-.
T Consensus 113 LLltGPsGcGKSTtvkvLsk 132 (634)
T KOG1970 113 LLLTGPSGCGKSTTVKVLSK 132 (634)
T ss_pred EEEECCCCCCCHHHHHHHHH
T ss_conf 99857988871319999998
No 347
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=92.60 E-value=0.11 Score=31.60 Aligned_cols=163 Identities=18% Similarity=0.241 Sum_probs=79.1
Q ss_pred CEEEEEECCCCCHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC-----CC-CCCCCC----CCCCC
Q ss_conf 204887327774367-99999984267543321012346554210024331125555-----32-211100----12344
Q gi|254780916|r 163 AIPIMIQGEFGVGKK-RLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQ-----TK-NSAQFL----GKFIE 231 (482)
Q Consensus 163 ~~~vli~Ge~GtGK~-~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~-----~~-~~~~~~----g~~~~ 231 (482)
.-=||++|+||+||+ ++|--|=+-=..+....++| +|-+| -+|-+++.. =| +..++. -.|.+
T Consensus 127 ~GLiLVTGPTGSGKSTTlAsmIDyIN~~~~~HIiTI------EDPIE-yvh~~~~sli~QREvG~DT~sF~~ALraALRe 199 (350)
T TIGR01420 127 RGLILVTGPTGSGKSTTLASMIDYINKNKAGHIITI------EDPIE-YVHKNKRSLINQREVGLDTLSFANALRAALRE 199 (350)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEE------ECCEE-EEECCCEEEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf 993898768898678999999978740388882563------17731-41047702454362467545799997684102
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66714751664200188999888877642001123553212343156521-43321111112333799988654334467
Q gi|254780916|r 232 ANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLT-EKNLLPQVKSHVFRKDLYYRISVFLINIS 310 (482)
Q Consensus 232 a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t-~~~L~~~~~~g~fr~dLy~rL~~~~i~iP 310 (482)
+--.+|+=|+=|+.- =.-=|.+=|+| .+|.+| |-| -+..... | -|.+=
T Consensus 200 -DPDvILiGE~RD~ET--~~~AL~AAETG---------------HLV~gTLHTn----sA~~ti~-----R----Iid~F 248 (350)
T TIGR01420 200 -DPDVILIGEMRDLET--VELALTAAETG---------------HLVFGTLHTN----SAAKTIE-----R----IIDVF 248 (350)
T ss_pred -CCCEEEEECCCCHHH--HHHHHHHHHHC---------------CHHHHHHHHH----HHHHHHH-----H----HHCCC
T ss_conf -898899825562789--99999874213---------------1567666642----3888767-----7----74259
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------CCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 787744222255667776410112233332-----------11111000122338986899999999
Q gi|254780916|r 311 TLRSRSEDIPWLVHFFLQSFCTKNAIKQIS-----------ISDKALSLLTKYPWIDNVQELKNILL 366 (482)
Q Consensus 311 pLReR~eDI~~L~~~fl~~~~~~~~~~~~~-----------ls~~a~~~L~~y~WPGNvREL~n~i~ 366 (482)
|..||..=--.|+..++.-+++++=.+.-+ -+|...++..+ ||++.|++.+++
T Consensus 249 P~~~~~qiR~~La~~L~Av~sQrL~p~~~G~GRv~~~Eil~~Tpav~~lIre---~gk~~qi~~~i~ 312 (350)
T TIGR01420 249 PAEEQEQIRTQLAESLVAVISQRLLPKKNGGGRVLAVEILINTPAVRNLIRE---EGKTHQIKSVIQ 312 (350)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEEECCCHHHHHHHCC---CCCHHHHHHHHH
T ss_conf 7756689999998767877000542233896258888752158789996028---788768999987
No 348
>PRK13413 mpi multiple promoter invertase; Provisional
Probab=92.59 E-value=0.29 Score=28.59 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=24.1
Q ss_pred HHCCCHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 8287278999784899889999999818
Q gi|254780916|r 449 LYRAQMSEVARRLGIGRSTLYRKIREYN 476 (482)
Q Consensus 449 ~~~Gn~~~aA~~LGIsR~tL~rKlk~~g 476 (482)
..+-+.++.|+.+||||+|+||-+|.|.
T Consensus 170 ~~g~s~~~iak~~gvsrsTvyR~lK~~~ 197 (200)
T PRK13413 170 KKGTTKSEIAKKLKVSRTTLARFLKTMY 197 (200)
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 8889999999998929999999997441
No 349
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=92.57 E-value=0.13 Score=31.06 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.2
Q ss_pred CCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 43204887327774367999999
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFI 183 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~i 183 (482)
..+..|+|.||+|+||+..++.|
T Consensus 89 ~~~QsIiiSGESGAGKTes~K~i 111 (693)
T cd01377 89 RENQSILITGESGAGKTENTKKV 111 (693)
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
T ss_conf 99806999688988889999999
No 350
>KOG0741 consensus
Probab=92.50 E-value=0.084 Score=32.38 Aligned_cols=190 Identities=17% Similarity=0.233 Sum_probs=90.8
Q ss_pred CCCCCCCCCCCCCCCCCCCC----CCCC----CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf 11111222222222222222----2344----3204887327774367999999842675433210123465542100--
Q gi|254780916|r 138 ALDSLIAVSPAMIQVVDLAR----KAGD----CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKI-- 207 (482)
Q Consensus 138 ~~~~LiG~S~~m~~v~~~i~----~~a~----~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~-- 207 (482)
...+++..++-..++.+... ++-+ .-.+||+.|++|+||+.+|--|-..|. -|||.+ |+ |++.+
T Consensus 505 ~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~---FPFvKi-iS--pe~miG~ 578 (744)
T KOG0741 505 VMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSD---FPFVKI-IS--PEDMIGL 578 (744)
T ss_pred HHCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC---CCEEEE-EC--HHHHCCC
T ss_conf 85785451630778876688999986334667635899866998876889999975279---984797-37--7870374
Q ss_pred -HHHHHCCC-CCCCCCCCCCCCCCCCCCCCEEEECCCCHH------H-----HHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf -24331125-555322111001234466714751664200------1-----8899988887764200112355321234
Q gi|254780916|r 208 -EKFLFGDV-DLQTKNSAQFLGKFIEANGGTIVLEEPDAL------P-----LAVQGRIYNFIETGKIEFFDSRGAIRLD 274 (482)
Q Consensus 208 -e~~lFG~~-~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L------~-----~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 274 (482)
|+.=--|. +.|-+|... --..+++|+|+.| . .-.|+ |+-+|... |. +.++
T Consensus 579 sEsaKc~~i~k~F~DAYkS--------~lsiivvDdiErLiD~vpIGPRfSN~vlQa-L~VllK~~---pp---kg~k-- 641 (744)
T KOG0741 579 SESAKCAHIKKIFEDAYKS--------PLSIIVVDDIERLLDYVPIGPRFSNLVLQA-LLVLLKKQ---PP---KGRK-- 641 (744)
T ss_pred CHHHHHHHHHHHHHHHHCC--------CCEEEEECCHHHHHCCCCCCCCHHHHHHHH-HHHHHCCC---CC---CCCE--
T ss_conf 6678899999988876338--------650899815565620024684035799999-99995248---98---8845--
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31565214332111111233379998865433446778774422225566777641011223333211111000122338
Q gi|254780916|r 275 VRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPW 354 (482)
Q Consensus 275 ~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~W 354 (482)
.-|+++|+ .-+-+-+-| +|... ..+|+||.|-.-.++...|.+ +..|+. -.....+.+.+....|
T Consensus 642 Lli~~TTS-~~~vL~~m~-----i~~~F-~~~i~Vpnl~~~~~~~~vl~~--~n~fsd------~~~~~~~~~~~~~~~~ 706 (744)
T KOG0741 642 LLIFGTTS-RREVLQEMG-----ILDCF-SSTIHVPNLTTGEQLLEVLEE--LNIFSD------DEVRAIAEQLLSKKVN 706 (744)
T ss_pred EEEEECCC-HHHHHHHCC-----HHHHH-HHEEECCCCCCHHHHHHHHHH--CCCCCC------CHHHHHHHHHHCCCCC
T ss_conf 99996240-799999727-----78751-110546756864789999997--166784------1467899987422321
Q ss_pred CCCHHHHHHHHH
Q ss_conf 986899999999
Q gi|254780916|r 355 IDNVQELKNILL 366 (482)
Q Consensus 355 PGNvREL~n~i~ 366 (482)
+| |..|--.|+
T Consensus 707 vg-IKklL~lie 717 (744)
T KOG0741 707 VG-IKKLLMLIE 717 (744)
T ss_pred HH-HHHHHHHHH
T ss_conf 31-999999988
No 351
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=92.47 E-value=0.91 Score=25.04 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=49.8
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHH
Q ss_conf 88732777436799999984267543321012346554210024331125555322111001234466714751664200
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDAL 245 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L 245 (482)
|++.|.+|+||+.+-+.+.....-...|-+-++...+.-..+.-.++.- .|...-..-....+..|++-.+++|--..-
T Consensus 2 i~ilG~~~vGKTsll~~l~~~~~~~~~pTig~~~~~i~~~~~~l~iwDt-~G~~~~~~~~~~y~~~a~~~i~V~D~t~~~ 80 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDV-GGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCEECCCEEEEEECCEEEEEEEC-CCCCCCCHHHHHHHCCCCEEEEEEECCCHH
T ss_conf 9999999998899999995399887445607408999848899999988-997221448998727687768998379888
Q ss_pred HHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHH
Q ss_conf 188-99988887764200112355321234315652143321111112
Q gi|254780916|r 246 PLA-VQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSH 292 (482)
Q Consensus 246 ~~~-~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g 292 (482)
+.+ ....+-+++.... ....+ =+|+++..||...+...
T Consensus 81 s~~~~~~~~~~~~~~~~------~~~~p---iliv~NK~Dl~~~~~~~ 119 (158)
T cd00878 81 RIEEAKEELHKLLNEEE------LKGVP---LLIFANKQDLPGALSVS 119 (158)
T ss_pred HHHHHHHHHHHHHHHCC------CCCCE---EEEEEECCCCCCCCCHH
T ss_conf 99999999999986605------57653---89876054766578999
No 352
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.45 E-value=0.071 Score=32.90 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=19.9
Q ss_pred EEEEECCCCCHHHHHHHH-HHHCCCCCCCCCC
Q ss_conf 488732777436799999-9842675433210
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRF-IHESGKRAFFPFF 195 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~-iH~~s~r~~~~fi 195 (482)
++||.|++||||+.+|-- +++. -+.+.+-+
T Consensus 1 stLi~G~pGsGKT~~a~qfl~~~-a~~ge~~l 31 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAG-LARGEPGL 31 (187)
T ss_pred CEEEEECCCCCHHHHHHHHHHHH-HHCCCCEE
T ss_conf 91587689999999999999999-87699789
No 353
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=92.35 E-value=0.37 Score=27.79 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=23.3
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 22222223443204887327774367999999
Q gi|254780916|r 152 VVDLARKAGDCAIPIMIQGEFGVGKKRLSRFI 183 (482)
Q Consensus 152 v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~i 183 (482)
+.+.+.--.....-|.|.|++|+||+++-+.|
T Consensus 13 vL~~vsl~i~~Ge~~~i~GpSGsGKSTLL~~i 44 (206)
T TIGR03608 13 ILDDLNLTIEKGKMVAIVGESGSGKSTLLNII 44 (206)
T ss_pred EECCEEEEECCCCEEEEECCCCCCHHHHHHHH
T ss_conf 97580779869989999879997099999999
No 354
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=92.32 E-value=0.13 Score=30.99 Aligned_cols=138 Identities=16% Similarity=0.105 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHH---CCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCC-CCC---CCCCCCCCCCC-C---CCCC
Q ss_conf 8889999999985---7898399992689999999888505743222222222-222---22222222222-2---2222
Q gi|254780916|r 65 DDKENILKNIVDK---IPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRK-QLC---DSIICALREGV-V---PSQE 133 (482)
Q Consensus 65 ~dGlell~~i~~~---~p~ipvIiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~-~L~---~~i~~al~~~~-~---~~~~ 133 (482)
.-|++++.++... +-.+ -.|+.|.=++-..++ .++ ...++..|+-+- ++- +.+.-++++-- . |.+.
T Consensus 372 ~Q~I~LI~K~t~a~~LWfGa-~lVi~G~ls~G~LVA-FNM-lAG~V~~PvlRLAQ~WQDFQq~~Ia~~RlGDiLn~P~E~ 448 (703)
T TIGR01846 372 SQAIELINKLTAALLLWFGA-HLVIKGELSVGQLVA-FNM-LAGRVSQPVLRLAQLWQDFQQVGIAIERLGDILNSPTEP 448 (703)
T ss_pred HHHHHHHHHHHHHHHHHCCC-EEEECCCCCHHHHHH-HHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 88999999999999985051-477626677437998-733-136302358989987666887766653121005868488
Q ss_pred ---CCCCCCCCCCC----------CCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCC-C-CCC
Q ss_conf ---21111111122----------22222222222222344320488732777436799999984267543321-0-123
Q gi|254780916|r 134 ---NEHCALDSLIA----------VSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPF-F-IVN 198 (482)
Q Consensus 134 ---~~~~~~~~LiG----------~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~f-i-~v~ 198 (482)
....+...+-| ..|.--+|.+.+.---.--.-+=|+|++|+||++++|.+-...--..|.- | -+|
T Consensus 449 ~~d~g~aalP~l~G~i~F~nirFRY~pD~PeVL~nl~L~I~~Ge~IGIvGpSGSGKSTLTKL~QRLYtP~~GqVLVDG~D 528 (703)
T TIGR01846 449 SSDAGLAALPELKGSITFENIRFRYKPDSPEVLSNLSLDIKPGEVIGIVGPSGSGKSTLTKLLQRLYTPEHGQVLVDGVD 528 (703)
T ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 99987303542257267875331468887178732687657865799872789867899999886148888747770300
Q ss_pred CCCCCCC
Q ss_conf 4655421
Q gi|254780916|r 199 CGMIDQD 205 (482)
Q Consensus 199 c~~~~~~ 205 (482)
.|-.|+.
T Consensus 529 LA~~DP~ 535 (703)
T TIGR01846 529 LAIADPA 535 (703)
T ss_pred CCCCCCC
T ss_conf 0101852
No 355
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=92.28 E-value=0.96 Score=24.88 Aligned_cols=116 Identities=12% Similarity=0.192 Sum_probs=54.6
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH---CCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 88732777436799999984267543321012346554210024331---125555322111001234466714751664
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLF---GDVDLQTKNSAQFLGKFIEANGGTIVLEEP 242 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lF---G~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei 242 (482)
|++.|..|+||+.+-+.++........|-+-+|...+..+.+.-.++ |+++. ..-..-.+..|++-.+++|--
T Consensus 2 il~lG~~~~GKTsll~~~~~~~~~~~~pTig~~~~~i~~~~~~~~iwD~~G~e~~----r~~~~~y~~~~~~ii~VvD~s 77 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSI----RPYWRCYYSNTDAIIYVVDST 77 (158)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCC----CHHHHHHCCCCCEEEEEEECC
T ss_conf 9999999998999999997099677578488246999989889999967986244----627887466788999997457
Q ss_pred CHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 200188-9998888776420011235532123431565214332111111233
Q gi|254780916|r 243 DALPLA-VQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVF 294 (482)
Q Consensus 243 ~~L~~~-~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~f 294 (482)
..-+.+ ....|..++++... ...+ -+|.+...|+...+.....
T Consensus 78 d~~~~~~~~~~l~~~l~~~~~------~~~p---iliv~NK~Dl~~~~~~~~i 121 (158)
T cd04151 78 DRDRLGTAKEELHAMLEEEEL------KGAV---LLVFANKQDMPGALSEAEI 121 (158)
T ss_pred CHHHHHHHHHHHHHHHHHHHH------CCCC---EEEEEECCCCCCCCCHHHH
T ss_conf 878999999999999834653------6981---9999976677657799999
No 356
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=92.21 E-value=0.52 Score=26.80 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=20.0
Q ss_pred CCCEEEEEECCCCCHHHHHHH-HHHHCCC
Q ss_conf 432048873277743679999-9984267
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSR-FIHESGK 188 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~-~iH~~s~ 188 (482)
.....+||.|++||||+++|- ++.+.-.
T Consensus 264 ~~GsstLi~Gp~GtGKTtla~qFl~~~a~ 292 (501)
T PRK09302 264 FRGSIILVSGATGTGKTLLVSKFAEAACR 292 (501)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 58946999889998889999999999986
No 357
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.18 E-value=0.056 Score=33.60 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=34.1
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 2222222344320488732777436799999984267543321012
Q gi|254780916|r 152 VVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIV 197 (482)
Q Consensus 152 v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v 197 (482)
+...++.+.....+++|.|.+||||+++.+++=..-+. +...++|
T Consensus 151 ~~~fL~~aV~~r~NIlIsGgTGSGKTTllnALl~~IP~-~eRIvtI 195 (343)
T PRK13851 151 LEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPP-QERLITI 195 (343)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCC-CCCEEEE
T ss_conf 99999999976988999888986199999999962896-5527996
No 358
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.07 E-value=0.054 Score=33.71 Aligned_cols=50 Identities=20% Similarity=0.186 Sum_probs=34.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 11111122222222222222223443204887327774367999999842
Q gi|254780916|r 137 CALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES 186 (482)
Q Consensus 137 ~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~ 186 (482)
...++++.....-....+.+..+.....+++|.|.+|+||+++.+++-..
T Consensus 123 ~tL~dlv~~G~~~~~~a~~L~~~V~~r~nilI~G~TgsGKTTll~all~~ 172 (320)
T PRK13894 123 FTLDQYVERGIMTAEQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINE 172 (320)
T ss_pred CCHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 99999987699999999999999972875899858886568999999863
No 359
>KOG2680 consensus
Probab=91.97 E-value=0.59 Score=26.37 Aligned_cols=130 Identities=17% Similarity=0.236 Sum_probs=77.6
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCC-----CHHHHHHHHHHHHHHHH
Q ss_conf 6671475166420018899988887764200112355321234315652143321111-----11233379998865433
Q gi|254780916|r 232 ANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQV-----KSHVFRKDLYYRISVFL 306 (482)
Q Consensus 232 a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~-----~~g~fr~dLy~rL~~~~ 306 (482)
-..|.||+||++-|..+.=.-|-|+|++ .+.|+ +|.+||+-....- ......-||+.|+-.+
T Consensus 287 ivpGVLFIDEvHMLDIEcFsFlNrAlE~-d~~Pi-----------iimaTNrgit~iRGTn~~SphGiP~D~lDR~lII- 353 (454)
T KOG2680 287 IVPGVLFIDEVHMLDIECFSFLNRALEN-DMAPI-----------IIMATNRGITRIRGTNYRSPHGIPIDLLDRMLII- 353 (454)
T ss_pred ECCCEEEEEEEHHHHHHHHHHHHHHHHH-CCCCE-----------EEEECCCCEEEEECCCCCCCCCCCHHHHHHHHEE-
T ss_conf 2255178740021115799988887650-46857-----------9997277557760577789888867776441255-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH---HHHHHHCCCCCCCHHHHH
Q ss_conf 44677877442222556677764101122333321111100012233898689999999---999874389810688954
Q gi|254780916|r 307 INISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNIL---LRAVIGLKDSHLTEDRFV 383 (482)
Q Consensus 307 i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i---~r~~i~~~~~~i~~~~~~ 383 (482)
..-| -..+|+..+... -|++.+ ..++++|+.+|..-.----+|=--|+| ...+.-..+.++..+|+.
T Consensus 354 -~t~p--y~~~d~~~IL~i----Rc~EEd---v~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~ 423 (454)
T KOG2680 354 -STQP--YTEEDIKKILRI----RCQEED---VEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIE 423 (454)
T ss_pred -ECCC--CCHHHHHHHHHH----HHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHH
T ss_conf -2565--768899999875----500521---335878999999861312378999998899999987548565446789
Q ss_pred H
Q ss_conf 5
Q gi|254780916|r 384 L 384 (482)
Q Consensus 384 ~ 384 (482)
.
T Consensus 424 r 424 (454)
T KOG2680 424 R 424 (454)
T ss_pred H
T ss_conf 9
No 360
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=91.94 E-value=1 Score=24.62 Aligned_cols=126 Identities=14% Similarity=0.178 Sum_probs=57.4
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 43204887327774367999999842675433210123465542100243311255553221110012344667147516
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLE 240 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ 240 (482)
.-..-|+|.|..|+||+.+-+.+.....-...|-+-+|...+..+...-.++- ..|.-.-..-..-.+..|++=.+++|
T Consensus 12 ~~~~Ki~ilG~~~sGKTsll~~l~~~~~~~~~pT~g~~~~~v~~~~~~~~lwD-~~G~~~~~~~~~~y~~~a~~iI~VvD 90 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWD-IGGQRAIRPYWRNYFENTDCLIYVID 90 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCEEEEEEE-CCCCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 87758999979999889999998569986606811323799998999999985-58751012689976555637999996
Q ss_pred CCCHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHH
Q ss_conf 6420018-8999888877642001123553212343156521433211111123337
Q gi|254780916|r 241 EPDALPL-AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRK 296 (482)
Q Consensus 241 ei~~L~~-~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~ 296 (482)
--+.-+. +....|..+|++.. ....+ =+|.+...|+...+....+.+
T Consensus 91 ~td~~~~~~~~~~l~~~l~~~~------~~~~P---iLiv~NK~Dl~~a~~~~eI~~ 138 (173)
T cd04155 91 SADKKRLEEAGAELVELLEEEK------LAGVP---VLVFANKQDLATAAPAEEIAE 138 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH------CCCCC---EEEEEECCCCCCCCCHHHHHH
T ss_conf 6756889999999999974130------06983---899997666777899999999
No 361
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=91.91 E-value=1.1 Score=24.59 Aligned_cols=123 Identities=13% Similarity=0.176 Sum_probs=58.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH---CCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 4320488732777436799999984267543321012346554210024331---1255553221110012344667147
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLF---GDVDLQTKNSAQFLGKFIEANGGTI 237 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lF---G~~~~~~~~~~~~~g~~~~a~~Gtl 237 (482)
+-..-|++.|..|+||+.+-+.+.........|=+-+|...+.....+-.++ |++.. ..-..-.+..|++-.+
T Consensus 13 ~k~~KililG~~~sGKTsil~~l~~~~~~~~~pT~G~~~~~i~~~~~~~~iwD~~G~e~~----~~~~~~y~~~a~~ii~ 88 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESL----RSSWNTYYTNTDAVIL 88 (174)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCC----CCHHHHHHCCCCEEEE
T ss_conf 977999999899998899999997399277167236046999978889999989998656----6226777057753799
Q ss_pred EECCCCHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHH
Q ss_conf 5166420018-8999888877642001123553212343156521433211111123337
Q gi|254780916|r 238 VLEEPDALPL-AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRK 296 (482)
Q Consensus 238 ~l~ei~~L~~-~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~ 296 (482)
++|--..-+. .....|.+++++... ...+ =+|.+...|+...+......+
T Consensus 89 VvD~sd~~~~~~~~~~l~~~l~~~~~------~~~p---ili~~NK~Dl~~~~~~~ei~~ 139 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDL------RKAV---LLVLANKQDLKGAMTPAEISE 139 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHCCCC------CCCC---EEEEEECCCCCCCCCHHHHHH
T ss_conf 99767888999999999999726101------6982---899995555655789999999
No 362
>COG1342 Predicted DNA-binding proteins [General function prediction only]
Probab=91.90 E-value=0.37 Score=27.83 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 899999999999999982872789997848998899999998
Q gi|254780916|r 433 RRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIRE 474 (482)
Q Consensus 433 ~~l~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~ 474 (482)
.+++|+|.-= .-...+-++.+||...||||.|+|+-+++
T Consensus 34 lt~eElEAlR---LvD~~~l~QeeAA~rMgISr~Tfwr~l~s 72 (99)
T COG1342 34 LTIEELEALR---LVDYEGLTQEEAALRMGISRQTFWRLLTS 72 (99)
T ss_pred ECHHHHHHHH---HHHHHHCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 2299988999---88686105789999846429999999999
No 363
>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a D
Probab=91.88 E-value=0.26 Score=28.85 Aligned_cols=28 Identities=43% Similarity=0.662 Sum_probs=23.1
Q ss_pred HHHHHHCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999828727899978489988999999
Q gi|254780916|r 445 LAMKLYRAQMSEVARRLGIGRSTLYRKI 472 (482)
Q Consensus 445 ~aL~~~~Gn~~~aA~~LGIsR~tL~rKl 472 (482)
..|-..+..+++.|+.+||||+|+||.+
T Consensus 15 r~l~~~G~~~~~iA~~~GVsr~Tiyr~l 42 (42)
T cd00569 15 RRLLAAGESVAEIARRLGVSRSTLYRYL 42 (42)
T ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 9999978989999999797999998659
No 364
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=91.86 E-value=1.1 Score=24.56 Aligned_cols=160 Identities=11% Similarity=0.070 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHCCCEEEEE------CCHH-----HHHHHCCCCCEEEEECCCCCCCH------HHHHHHHHHHCCCC
Q ss_conf 9899999999999889889998------9379-----99986089989999785469888------99999999857898
Q gi|254780916|r 19 DDEQIKIIKDHVESYGYDVFIV------NVSD-----LSTISKIQVNVIFLSLINCEDDK------ENILKNIVDKIPIV 81 (482)
Q Consensus 19 d~~~~~~l~~~L~~~G~~v~~a------~~~a-----l~~l~~~~~dlillD~~mP~~dG------lell~~i~~~~p~i 81 (482)
....+......|+..|.+.... +-+. ++..-...|+++++|--....|- +++++++++. ..
T Consensus 114 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~kQrv~ia~aL~~~p~lliLDEPts~LD~~~~~~l~~~l~~l~~~--G~ 191 (501)
T PRK11288 114 RRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALMRNARVIAFDEPTSSLSAREIEQLFRVIRELRAE--GR 191 (501)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH--CC
T ss_conf 9999999999998769986657842669999999999999986099899965874568989999998899999872--76
Q ss_pred CEEEEECCCCHHHHHH-----HHHCCC-CCCCCC--CCCCCCCCCCC-CCCCCCC---CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3999926899999998-----885057-432222--22222222222-2222222---2222222111111112222222
Q gi|254780916|r 82 PIIVQTTQDNIKILNC-----FLYNRI-SKFFLN--LVSRKQLCDSI-ICALREG---VVPSQENEHCALDSLIAVSPAM 149 (482)
Q Consensus 82 pvIiiT~~~~~~~~~~-----a~~~g~-~d~l~K--P~~~~~L~~~i-~~al~~~---~~~~~~~~~~~~~~LiG~S~~m 149 (482)
- |+++.|.-.+...- .+++|- ..-+.. -...+.+.... .+.+... ..............+-+
T Consensus 192 t-il~isH~l~~~~~~~Drv~vl~~G~iv~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~l~~~~l~~----- 265 (501)
T PRK11288 192 V-ILYVSHRMEEIFALCDAITVFRDGRYVATFDDMAQVDRDRLVQAMVGREIGDIYGYRPRPLGDVRLRLKGLKG----- 265 (501)
T ss_pred C-EEEECCCHHHHHHHCCEEEEEECCEEEEECCCHHHCCHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEEECCC-----
T ss_conf 1-2651332899997588789711885997637213379999999862855354058788887743799985037-----
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 2222222223443204887327774367999999842
Q gi|254780916|r 150 IQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES 186 (482)
Q Consensus 150 ~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~ 186 (482)
..+.+-+.--.....-|-|.|++|+||+++++.|-..
T Consensus 266 ~~~~~~vsl~v~~GEivgivG~nGsGKSTL~k~L~Gl 302 (501)
T PRK11288 266 PGLREPISFAVRRGEIVGFFGLVGAGRSELMKLLYGA 302 (501)
T ss_pred CCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCC
T ss_conf 8745663478708839997568886487999984387
No 365
>KOG2035 consensus
Probab=91.83 E-value=0.73 Score=25.73 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=31.2
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 1475166420018899988887764200112355321234315652143
Q gi|254780916|r 235 GTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEK 283 (482)
Q Consensus 235 Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~ 283 (482)
-.++|.|.+.|..+.|..|-|.++. ...++|+|-.+|.
T Consensus 129 Kvvvi~ead~LT~dAQ~aLRRTMEk-----------Ys~~~RlIl~cns 166 (351)
T KOG2035 129 KVVVINEADELTRDAQHALRRTMEK-----------YSSNCRLILVCNS 166 (351)
T ss_pred EEEEEECHHHHHHHHHHHHHHHHHH-----------HHCCCEEEEEECC
T ss_conf 8999803576508899999999999-----------8607169999267
No 366
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=91.68 E-value=0.081 Score=32.46 Aligned_cols=102 Identities=18% Similarity=0.134 Sum_probs=49.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEE--CCHHHH-HHHC-----CCCCEEEEECCCCCC---------------
Q ss_conf 28838998699899999999999889889998--937999-9860-----899899997854698---------------
Q gi|254780916|r 9 RHKRVLIIDKDDEQIKIIKDHVESYGYDVFIV--NVSDLS-TISK-----IQVNVIFLSLINCED--------------- 65 (482)
Q Consensus 9 ~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a--~~~al~-~l~~-----~~~dlillD~~mP~~--------------- 65 (482)
+..++.|.=.||.....+..+==.-|++|..+ ....+. ++.+ ..-..-+-|.-+..+
T Consensus 92 ~G~~L~~A~~DPtn~~a~~~i~F~tg~~ve~v~v~ed~l~~~i~~~y~~s~~~~~~~~~~d~g~~e~~d~~~~~~~~~~~ 171 (577)
T TIGR02538 92 RGNTLFVAVSDPTNISALDDIKFATGLNVEVVVVEEDKLSALIEKYYGESDSLAKELEDEDIGDLEELDVSAIDDEDPDS 171 (577)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 58847999757545688999874149679999727289999999985344443321254202443321356432555556
Q ss_pred --CHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf --8899999999857898399992689999999888505743222222222
Q gi|254780916|r 66 --DKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRK 114 (482)
Q Consensus 66 --dGlell~~i~~~~p~ipvIiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~ 114 (482)
+..+--..+-+-..+-|||=.= -.....|++.||.|-=.-|+...
T Consensus 172 ~~~~~d~~~dmDqfnaDAPvvKFv----N~iL~DAir~GASDIHFEPYE~~ 218 (577)
T TIGR02538 172 EDEEEDAEDDMDQFNADAPVVKFV----NKILLDAIRKGASDIHFEPYEKK 218 (577)
T ss_pred CCCCCCCHHHHHHHCCCCCCHHHH----HHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 554200013455423688701338----78799998468861211367687
No 367
>pfam02001 DUF134 Protein of unknown function DUF134. This family of archaeal proteins has no known function.
Probab=91.67 E-value=0.39 Score=27.65 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 899999999999999982872789997848998899999998
Q gi|254780916|r 433 RRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIRE 474 (482)
Q Consensus 433 ~~l~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~ 474 (482)
-+++|+|-- ......+-++.+||+..||||+|+||-+..
T Consensus 37 L~~dE~EAi---RL~D~egl~QeeaA~~MgVSR~Tf~ril~~ 75 (100)
T pfam02001 37 ITLDEFEAI---RLVDYEDYTQEEAAKLMGISRRTVWRLLTS 75 (100)
T ss_pred ECHHHHHHH---HHHHHCCCCHHHHHHHCCCCHHHHHHHHHH
T ss_conf 349999999---987360798999998849769999999999
No 368
>COG3835 CdaR Sugar diacid utilization regulator [Transcription / Signal transduction mechanisms]
Probab=91.66 E-value=0.25 Score=28.97 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=27.2
Q ss_pred HHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9999828727899978489988999999981
Q gi|254780916|r 445 LAMKLYRAQMSEVARRLGIGRSTLYRKIREY 475 (482)
Q Consensus 445 ~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~~ 475 (482)
+.+-.+||+-..||+.|+|.|+||++|++|-
T Consensus 319 ~~~f~~N~~l~~tA~~L~IHrNTLrYRL~kI 349 (376)
T COG3835 319 QTYFAHNGQLNATAEALFIHRNTLRYRLEKI 349 (376)
T ss_pred HHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999855999899998451051599999999
No 369
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=91.63 E-value=0.13 Score=31.07 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=33.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCCCCH----HHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 432048873277743679999998-426754332101234655421002----4331125555322111001234
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIH-ESGKRAFFPFFIVNCGMIDQDKIE----KFLFGDVDLQTKNSAQFLGKFI 230 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH-~~s~r~~~~fi~v~c~~~~~~~~e----~~lFG~~~~~~~~~~~~~g~~~ 230 (482)
..+..|+|.||+|+||+..++.|= .......+.- ..+.+..++ -|=||..+-...+.+.|-|++-
T Consensus 85 ~~~QsIiisGESGAGKTes~K~il~yL~~~~~~~~-----~~~~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~ 154 (677)
T cd01387 85 KQNQCVIISGESGSGKTEATKLILRYLAAMNQGGS-----AVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFV 154 (677)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE
T ss_conf 99925999827978898899999999876538998-----42999998651698875064147899757703459
No 370
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=91.61 E-value=0.13 Score=30.95 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=23.7
Q ss_pred CCCEEEEEECCCCCHHHHHH-HHHHHCCCCC--CCCCCC
Q ss_conf 43204887327774367999-9998426754--332101
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLS-RFIHESGKRA--FFPFFI 196 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A-~~iH~~s~r~--~~~fi~ 196 (482)
.-...+||.|++||||+.+| +.+++.-.+. +.-|++
T Consensus 17 ~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis 55 (231)
T pfam06745 17 PEGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVT 55 (231)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 299699998589725999999999999986589689998
No 371
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=91.55 E-value=0.15 Score=30.64 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=24.9
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 22222222344320488732777436799999984
Q gi|254780916|r 151 QVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHE 185 (482)
Q Consensus 151 ~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~ 185 (482)
.+.+.+.--.....-+-|.||+|+||++++++|-.
T Consensus 26 ~~l~~vs~~i~~GE~l~ivGeSGsGKSTL~r~i~g 60 (266)
T PRK10419 26 AVLNNVSLTLKSGETVALLGRSGCGKSTLARLLVG 60 (266)
T ss_pred EEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 88858175888998999999999779999999966
No 372
>pfam09862 DUF2089 Protein of unknown function(DUF2089). This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=91.35 E-value=0.47 Score=27.09 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=28.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH----HHHCC
Q ss_conf 99999999828727899978489988999999----98188
Q gi|254780916|r 441 EIIGLAMKLYRAQMSEVARRLGIGRSTLYRKI----REYNI 477 (482)
Q Consensus 441 ~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKl----k~~gi 477 (482)
......+-++.||..+.|+.||||..|.+.|+ +++|.
T Consensus 39 l~Fi~~fi~~~Gnlke~~~~lgiSYpTvR~rLd~ii~~lGy 79 (113)
T pfam09862 39 LEFVELFIKCRGNIKEVEKELGISYPTVRNRLDEIIAALGY 79 (113)
T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999916889999999788818899999999998089
No 373
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE; InterPro: IPR014137 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase..
Probab=91.26 E-value=0.15 Score=30.58 Aligned_cols=57 Identities=19% Similarity=0.146 Sum_probs=45.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 111111122222222222222223443204887327774367999999842675433
Q gi|254780916|r 136 HCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFF 192 (482)
Q Consensus 136 ~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~ 192 (482)
......|+|.......|.+.|.---..-..|=+.|-+|+||.++||.|=..-+-+.|
T Consensus 11 ~Y~~~~L~~r~~~~~~VL~~vsL~l~~Ge~~gLLG~SG~GKSTLArlLlGLe~P~~G 67 (267)
T TIGR02769 11 TYRTGGLLGRKKQRKAVLDNVSLSLEEGETVGLLGRSGCGKSTLARLLLGLEKPAQG 67 (267)
T ss_pred EECCCHHHHHHHHHHHHCCCCCEEECCCCEEEECCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 100201345545443103674323137750552367887377899998750788874
No 374
>PRK13768 GTPase; Provisional
Probab=91.25 E-value=0.14 Score=30.82 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=24.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 4887327774367999999842675433210123
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVN 198 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~ 198 (482)
-+++.|++|+||+++.+.++++-...+.+-..||
T Consensus 4 ~~~ViGpaGSGKsT~~~~l~~~l~~~~r~~~vvN 37 (253)
T PRK13768 4 IVFFLGTAGSGKTTLVGALSDWLEEQGYDVAIVN 37 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 8999899999889999999999997699759997
No 375
>KOG1942 consensus
Probab=91.23 E-value=0.41 Score=27.50 Aligned_cols=109 Identities=18% Similarity=0.284 Sum_probs=73.3
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC------CCCCCHHHHHHHHHHHHHHH
Q ss_conf 667147516642001889998888776420011235532123431565214332------11111123337999886543
Q gi|254780916|r 232 ANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNL------LPQVKSHVFRKDLYYRISVF 305 (482)
Q Consensus 232 a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L------~~~~~~g~fr~dLy~rL~~~ 305 (482)
---|.||+||++-|..+.=.-|-++|++.. . --+|++||+.. ++...-...-.||+.||-.
T Consensus 295 lvPGVLFIDEVhMLDiEcFTyL~kalES~i-a-----------PivifAsNrG~~~irGt~d~~sPhGip~dllDRl~I- 361 (456)
T KOG1942 295 LVPGVLFIDEVHMLDIECFTYLHKALESPI-A-----------PIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLI- 361 (456)
T ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHCCCC-C-----------CEEEEECCCCCEEECCCCCCCCCCCCCHHHHHHEEE-
T ss_conf 367626863013242699999999862778-7-----------569996277610221776787878899778612667-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 3446778774422225566777641011223333211111000122338986899999999
Q gi|254780916|r 306 LINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILL 366 (482)
Q Consensus 306 ~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~ 366 (482)
++.++--.+|+..++.. -++..| ..++++|+.+|..-. --+-|+..++
T Consensus 362 ---irt~~y~~~e~r~Ii~~----Ra~~E~---l~~~e~a~~~l~~~g---t~tsLRy~vq 409 (456)
T KOG1942 362 ---IRTLPYDEEEIRQIIKI----RAQVEG---LQVEEEALDLLAEIG---TSTSLRYAVQ 409 (456)
T ss_pred ---EEECCCCHHHHHHHHHH----HHHHHC---CEECHHHHHHHHHHC---CCHHHHHHHH
T ss_conf ---86036998999999999----876514---232288999987605---4145788988
No 376
>PRK00254 ski2-like helicase; Provisional
Probab=91.22 E-value=0.29 Score=28.52 Aligned_cols=52 Identities=10% Similarity=0.023 Sum_probs=27.3
Q ss_pred CCCCEEEEE-CCCCCC--CHHHHHHHHHHHCCCCCEEEEECC-CCHHHHHHHHHCCCC
Q ss_conf 899899997-854698--889999999985789839999268-999999988850574
Q gi|254780916|r 51 IQVNVIFLS-LINCED--DKENILKNIVDKIPIVPIIVQTTQ-DNIKILNCFLYNRIS 104 (482)
Q Consensus 51 ~~~dlillD-~~mP~~--dGlell~~i~~~~p~ipvIiiT~~-~~~~~~~~a~~~g~~ 104 (482)
...++|+.| +.|=+. =|..+=.-+....+.+.+|.+||. ++.+.... +.++.
T Consensus 137 ~~i~lvViDEiH~igD~~RG~~lE~~l~~l~~~~qiIgLSATi~N~~~la~--WL~a~ 192 (717)
T PRK00254 137 KDVKLLVADEIHLIGSRDRGATLEFILTHMLGRAQIIGLSATIGNPEELAE--WLNAE 192 (717)
T ss_pred HCCCEEEEECEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHH--HHCCC
T ss_conf 326989997607888987409999999951003669999633499899999--82885
No 377
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.21 E-value=0.13 Score=31.06 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=20.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 32048873277743679999998426
Q gi|254780916|r 162 CAIPIMIQGEFGVGKKRLSRFIHESG 187 (482)
Q Consensus 162 ~~~~vli~Ge~GtGK~~~A~~iH~~s 187 (482)
....+=|.||+|+||+++||+|-..-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89789998489898889999995656
No 378
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=91.17 E-value=1.3 Score=24.07 Aligned_cols=112 Identities=13% Similarity=0.221 Sum_probs=52.2
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCHHHHH---CCCCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 8873277743679999998426754332101234655421-0024331---12555532211100123446671475166
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQD-KIEKFLF---GDVDLQTKNSAQFLGKFIEANGGTIVLEE 241 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~-~~e~~lF---G~~~~~~~~~~~~~g~~~~a~~Gtl~l~e 241 (482)
|++.|..|+||+.+-+.+-........|-+-+|...+.-+ .+.-.++ |.+.. ..-....+..|++-.+++|-
T Consensus 2 ivilG~~~~GKTsil~r~~~~~~~~~~pTig~~~~~~~~~~~~~l~iwD~~G~e~~----~~~~~~y~~~a~~iI~V~D~ 77 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKM----RTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCEEEEEEEECCCCCCC----CHHHHHHHCCCCEEEEEEEC
T ss_conf 99999999999999999956987775776150389999899899999978986247----41588774567789999856
Q ss_pred CCHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 420018-8999888877642001123553212343156521433211111
Q gi|254780916|r 242 PDALPL-AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVK 290 (482)
Q Consensus 242 i~~L~~-~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~ 290 (482)
-..-+. ..+..+-.++++.. .+..+ =+|.+...|+...+.
T Consensus 78 td~~~~~~~~~~~~~~l~~~~------~~~~p---ili~~NK~Dl~~~~~ 118 (160)
T cd04156 78 SDEARLDESQKELKHILKNEH------IKGVP---VVLLANKQDLPGALT 118 (160)
T ss_pred CCHHHHHHHHHHHHHHHHHHC------CCCCE---EEEEEECCCCCCCCC
T ss_conf 867887879999999986635------37874---999998633656679
No 379
>KOG0479 consensus
Probab=91.09 E-value=0.86 Score=25.23 Aligned_cols=112 Identities=15% Similarity=0.198 Sum_probs=74.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4320488732777436799999984267543321012346-----55421002433112555532211100123446671
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCG-----MIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGG 235 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~-----~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~G 235 (482)
.-+.+||+.|.+-|-|.-+-|++-+.-+++- +--.. +++...- .+..||...--.|.+-.|+.|
T Consensus 332 RGDINiLlvGDPSvAKSQLLRyVLntAplAI----~TTGRGSSGVGLTAAVT-------tD~eTGERRLEAGAMVLADRG 400 (818)
T KOG0479 332 RGDINILLVGDPSVAKSQLLRYVLNTAPLAI----ATTGRGSSGVGLTAAVT-------TDQETGERRLEAGAMVLADRG 400 (818)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCCCC----CCCCCCCCCCCCEEEEE-------ECCCCCHHHHHCCCEEECCCC
T ss_conf 2520389846952789999999984154001----03688877755146774-------155531343423836870585
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCEEEEECCC
Q ss_conf 4751664200188999888877642001--12355321234315652143
Q gi|254780916|r 236 TIVLEEPDALPLAVQGRIYNFIETGKIE--FFDSRGAIRLDVRLIFLTEK 283 (482)
Q Consensus 236 tl~l~ei~~L~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~~RiIa~t~~ 283 (482)
.+++||-+.|+-.-...+..+++.+.+. .-|-+......|-++|+.|.
T Consensus 401 VVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANP 450 (818)
T KOG0479 401 VVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANP 450 (818)
T ss_pred EEEEHHCCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHCCCEEEEEECCC
T ss_conf 58731002224303789999986053886711000202351124431376
No 380
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=91.08 E-value=1.3 Score=24.02 Aligned_cols=119 Identities=13% Similarity=0.201 Sum_probs=56.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH---CCCCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 488732777436799999984267543321012346554210024331---12555532211100123446671475166
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLF---GDVDLQTKNSAQFLGKFIEANGGTIVLEE 241 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lF---G~~~~~~~~~~~~~g~~~~a~~Gtl~l~e 241 (482)
-|++.|..|+||+.+-+.++....-...|-+-.|-..+....+.-.++ |+.+. ..--.-.+..|++=.+++|-
T Consensus 2 KililG~~~sGKTsll~~l~~~~~~~~~pT~g~~~~~~~~~~~~l~iwD~~G~~~~----r~l~~~Y~~~a~~iI~VvD~ 77 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI----RPLWRHYFQNTQGLIFVVDS 77 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCC----CHHHHHHCCCCCEEEEEEEC
T ss_conf 99999999999899999997299677589687017999989899999978997214----65678647687389999977
Q ss_pred CCHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHH
Q ss_conf 420018-8999888877642001123553212343156521433211111123337
Q gi|254780916|r 242 PDALPL-AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRK 296 (482)
Q Consensus 242 i~~L~~-~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~ 296 (482)
-+.-+. +....|..+|.+... ...+ =+|.+...|+...+......+
T Consensus 78 sd~~~~~~~~~~l~~~l~~~~~------~~~p---ili~~NK~Dl~~~~~~~ei~~ 124 (159)
T cd04150 78 NDRERIGEAREELQRMLNEDEL------RDAV---LLVFANKQDLPNAMSAAEVTD 124 (159)
T ss_pred CCHHHHHHHHHHHHHHHCCHHH------CCCE---EEEEEECCCCCCCCCHHHHHH
T ss_conf 7778999999999999623533------6982---999997566778989999999
No 381
>PRK03839 putative kinase; Provisional
Probab=91.04 E-value=0.17 Score=30.22 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=19.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHC
Q ss_conf 4887327774367999999842
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIHES 186 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH~~ 186 (482)
-|+|+|-+||||+++|+.+-..
T Consensus 2 ~I~ITGTPGtGKTTva~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTISKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999789999989999999997
No 382
>pfam07693 KAP_NTPase KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.
Probab=91.02 E-value=1.2 Score=24.26 Aligned_cols=70 Identities=10% Similarity=0.162 Sum_probs=36.1
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC-CCCCCHHHHH------HHHHHHHHHHHHH
Q ss_conf 47516642001889998888776420011235532123431565214332-1111112333------7999886543344
Q gi|254780916|r 236 TIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNL-LPQVKSHVFR------KDLYYRISVFLIN 308 (482)
Q Consensus 236 tl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L-~~~~~~g~fr------~dLy~rL~~~~i~ 308 (482)
.+|+|+++++.++.=..+|+++..= . +- -++-+|-+.+.+- .+.++. .|. ++.+.++=.+++.
T Consensus 163 VviIDDLDRc~p~~~v~~Le~Ik~~--~---d~----~n~vfVLa~D~~~v~~al~~-~~~~~~~~~~~YLeKiIq~p~~ 232 (301)
T pfam07693 163 VVIIDDLDRCEPEEAVELLEAVRLL--F---DF----PNVVFILAYDEEIIKKAIEH-NYGGGEIDGQDYLEKIIQLPFK 232 (301)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHH--H---CC----CCEEEEEECCHHHHHHHHHH-HCCCCCCCHHHHHHHHEECEEE
T ss_conf 9997365548878999999999997--2---67----98189997589999999998-7387874189999854102476
Q ss_pred HHHHHHH
Q ss_conf 6778774
Q gi|254780916|r 309 ISTLRSR 315 (482)
Q Consensus 309 iPpLReR 315 (482)
+|++-..
T Consensus 233 lP~~~~~ 239 (301)
T pfam07693 233 LPPLGLR 239 (301)
T ss_pred CCCCCHH
T ss_conf 7998789
No 383
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=91.01 E-value=0.12 Score=31.16 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=19.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 432048873277743679999998
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIH 184 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH 184 (482)
..+..|+|.||+|+||+..++.|=
T Consensus 84 ~~nQsIiiSGESGaGKTestK~il 107 (653)
T cd01379 84 NQDQCIVISGESGSGKTESAHLLV 107 (653)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 898289995789898768899999
No 384
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=91.00 E-value=0.27 Score=28.77 Aligned_cols=53 Identities=19% Similarity=0.105 Sum_probs=33.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 11122222222222222223443204887327774367999999842675433
Q gi|254780916|r 140 DSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFF 192 (482)
Q Consensus 140 ~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~ 192 (482)
+.+-=..|.=+.+.+.+.---..-..+||.||+|+||+.+=|+|-..=+...+
T Consensus 396 ~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G 448 (604)
T COG4178 396 ENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSG 448 (604)
T ss_pred EEEEEECCCCCEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 54367779987421465265479987998789998788999999645856787
No 385
>KOG2543 consensus
Probab=90.97 E-value=0.23 Score=29.22 Aligned_cols=92 Identities=23% Similarity=0.255 Sum_probs=52.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCHHHHHCC----CCCC-C-C---CCCCCCCCCC
Q ss_conf 32048873277743679999998426754332101234655--421002433112----5555-3-2---2111001234
Q gi|254780916|r 162 CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMI--DQDKIEKFLFGD----VDLQ-T-K---NSAQFLGKFI 230 (482)
Q Consensus 162 ~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~--~~~~~e~~lFG~----~~~~-~-~---~~~~~~g~~~ 230 (482)
..+.|+|.|++||||+.+-|..-... +.|++-+||-.. ...++|+-|+-- +++. + + +..+.+-+|+
T Consensus 29 ~PS~~~iyG~sgTGKT~~~r~~l~~~---n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~ 105 (438)
T KOG2543 29 IPSIVHIYGHSGTGKTYLVRQLLRKL---NLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLV 105 (438)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC---CCCCEEEEHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 65157996147874559999998603---786305415775167999999998735678740555427999999999998
Q ss_pred C---C-CC--C-EEEECCCCHHHHHHHHHHHHHH
Q ss_conf 4---6-67--1-4751664200188999888877
Q gi|254780916|r 231 E---A-NG--G-TIVLEEPDALPLAVQGRIYNFI 257 (482)
Q Consensus 231 ~---a-~~--G-tl~l~ei~~L~~~~Q~~Ll~~l 257 (482)
+ + +. + -|+||+++.+- ++-+-||..+
T Consensus 106 q~~~~t~~d~~~~liLDnad~lr-D~~a~ll~~l 138 (438)
T KOG2543 106 QWPAATNRDQKVFLILDNADALR-DMDAILLQCL 138 (438)
T ss_pred HHHHHHCCCCEEEEEECCHHHHH-CCCHHHHHHH
T ss_conf 44776446744999974777663-0650788999
No 386
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=90.93 E-value=1.3 Score=23.92 Aligned_cols=89 Identities=10% Similarity=0.147 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHCCCEEEEECC----HH-HHHHHCCCCCEEEEECCCCCC-CHH-HHHHHHHHHC-CCCCEEEEECCCCHH
Q ss_conf 999999999988988999893----79-999860899899997854698-889-9999999857-898399992689999
Q gi|254780916|r 22 QIKIIKDHVESYGYDVFIVNV----SD-LSTISKIQVNVIFLSLINCED-DKE-NILKNIVDKI-PIVPIIVQTTQDNIK 93 (482)
Q Consensus 22 ~~~~l~~~L~~~G~~v~~a~~----~a-l~~l~~~~~dlillD~~mP~~-dGl-ell~~i~~~~-p~ipvIiiT~~~~~~ 93 (482)
=..+++.+|+..||+|.--+. +. .+.+.+.+||+|.+...|+.. ..+ ++.+.+++.. +++| |++-|..-..
T Consensus 15 G~~iv~~~l~~~G~~V~~lG~~vp~e~~v~~a~~~~~d~I~lS~~~~~~~~~~~~~i~~l~~~g~~~i~-v~vGG~~~~~ 93 (119)
T cd02067 15 GKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIP-VLVGGAIVTR 93 (119)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCE-EEEECCCCCH
T ss_conf 999999999978998998999999999999999709999999622024268999999999976999985-9998998974
Q ss_pred HHHHHHHCCCCCCCCCCC
Q ss_conf 999888505743222222
Q gi|254780916|r 94 ILNCFLYNRISKFFLNLV 111 (482)
Q Consensus 94 ~~~~a~~~g~~d~l~KP~ 111 (482)
....+...|+..|+..-.
T Consensus 94 ~~~~~~~~Gad~~~~~a~ 111 (119)
T cd02067 94 DFKFLKEIGVDAYFGPAT 111 (119)
T ss_pred HHHHHHHCCCCEEECCHH
T ss_conf 399999869979977807
No 387
>PRK04328 hypothetical protein; Provisional
Probab=90.89 E-value=0.16 Score=30.31 Aligned_cols=45 Identities=18% Similarity=0.123 Sum_probs=26.5
Q ss_pred CCEEEEEECCCCCHHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32048873277743679999-99842675433210123465542100
Q gi|254780916|r 162 CAIPIMIQGEFGVGKKRLSR-FIHESGKRAFFPFFIVNCGMIDQDKI 207 (482)
Q Consensus 162 ~~~~vli~Ge~GtGK~~~A~-~iH~~s~r~~~~fi~v~c~~~~~~~~ 207 (482)
-...+||.|++||||+++|- .+++. -+.+.+=+-+.+..-+++++
T Consensus 23 ~gs~~Lv~G~pGtGKT~la~qFl~~g-~~~GE~~lyis~eE~~~~l~ 68 (250)
T PRK04328 23 ERNVVLLSGGPGTGKSIFSQQFLWNG-LQMGEPGIYVALEEHPVQVR 68 (250)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHH-HHCCCCEEEEEEECCHHHHH
T ss_conf 99699998289999899999999999-87699779999727999999
No 388
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=90.88 E-value=0.4 Score=27.55 Aligned_cols=108 Identities=14% Similarity=-0.024 Sum_probs=48.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCC-CCCCCCCC---CCCCCCHHHHHCCCCCCCCCCCCCC---CCCCC--C-CC
Q ss_conf 48873277743679999998426754332-10123465---5421002433112555532211100---12344--6-67
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIHESGKRAFFP-FFIVNCGM---IDQDKIEKFLFGDVDLQTKNSAQFL---GKFIE--A-NG 234 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH~~s~r~~~~-fi~v~c~~---~~~~~~e~~lFG~~~~~~~~~~~~~---g~~~~--a-~~ 234 (482)
-++|+|+.|+||+.+-|.|--.-..+... ++...... .+.... ++.....+..+...++. -.+.. . +.
T Consensus 23 ~~iItGpN~sGKSt~Lr~i~l~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~lSgg~~~~~~l~~~l~~~~~~~~ 100 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSA--ELIFTRLQLSGGEKELSALALILALASLKPR 100 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHEE--EEEECCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 89998998775799999999999986326775255542776402305--7664120005429999999999985424898
Q ss_pred CEEEECCCCH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 1475166420-0188999888877642001123553212343156521433
Q gi|254780916|r 235 GTIVLEEPDA-LPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKN 284 (482)
Q Consensus 235 Gtl~l~ei~~-L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~ 284 (482)
.-++|||+.. +.+..-..+..++.+..- ...++|.+|+..
T Consensus 101 ~lillDE~~~Gtd~~~~~~l~~~i~~~~~----------~~~~~i~tTH~~ 141 (162)
T cd03227 101 PLYILDEIDRGLDPRDGQALAEAILEHLV----------KGAQVIVITHLP 141 (162)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHH----------CCCEEEEECCHH
T ss_conf 48996365579998899999999999997----------699899979739
No 389
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=90.82 E-value=0.18 Score=30.03 Aligned_cols=68 Identities=18% Similarity=0.242 Sum_probs=46.8
Q ss_pred CCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 211111111222222---222222222234432048873277743679999998426754332101234655
Q gi|254780916|r 134 NEHCALDSLIAVSPA---MIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMI 202 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~---m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~ 202 (482)
......++|+|+-.+ .--+.+.|+.=--....|||.|++||||+.+|-+|.+.-. .+-||..++.+.+
T Consensus 18 ~~~~~~~GlVGQ~~AReAagiiv~mIk~~K~aGraiLlaGppGTGKTAlA~aiakeLG-~~vPF~~i~gSEv 88 (395)
T pfam06068 18 EARYVSEGLVGQEKAREAAGVIVEMIKEGKIAGRAVLIAGPPGTGKTALAIAISKELG-EDTPFCPISGSEV 88 (395)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHC-CCCCEEEEEHHEE
T ss_conf 8836457754549999998999999972775773899877999888999999999748-7997345001112
No 390
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=90.79 E-value=1.2 Score=24.16 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=17.3
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 48873277743679999998
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIH 184 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH 184 (482)
+|+|.|..|+||+.+-+.+.
T Consensus 1 ~ivilG~~~~GKTsll~~l~ 20 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLK 20 (167)
T ss_pred CEEEECCCCCCHHHHHHHHH
T ss_conf 99999999988889999887
No 391
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=90.76 E-value=0.18 Score=29.97 Aligned_cols=46 Identities=13% Similarity=0.132 Sum_probs=27.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3204887327774367999999842675433210123465542100
Q gi|254780916|r 162 CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKI 207 (482)
Q Consensus 162 ~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~ 207 (482)
...-++|.||+|+||+.+|--+-..-...++.-+-|++-.++.+.+
T Consensus 22 ~G~itei~G~pG~GKTtl~lq~a~~~~~~g~~vlYidtE~~~~er~ 67 (224)
T PRK09361 22 RGTITQIYGPPGSGKTNICIQLAVEAARQGKKVIYIDTEGLSPERF 67 (224)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
T ss_conf 8879999899998599999999999997499099967876788999
No 392
>KOG0924 consensus
Probab=90.75 E-value=0.11 Score=31.65 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=35.1
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCHHHH-HHHHHHHCCCCCCC
Q ss_conf 222222222234432048873277743679-99999842675433
Q gi|254780916|r 149 MIQVVDLARKAGDCAIPIMIQGEFGVGKKR-LSRFIHESGKRAFF 192 (482)
Q Consensus 149 m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~-~A~~iH~~s~r~~~ 192 (482)
+-.+++++-.+..-+.-|+|.||+|+||++ +|+++|..+--.++
T Consensus 357 vf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~G 401 (1042)
T KOG0924 357 VFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNG 401 (1042)
T ss_pred HHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 578899999998638579999358898501667999862245587
No 393
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=90.74 E-value=0.15 Score=30.52 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=20.3
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 3204887327774367999999842
Q gi|254780916|r 162 CAIPIMIQGEFGVGKKRLSRFIHES 186 (482)
Q Consensus 162 ~~~~vli~Ge~GtGK~~~A~~iH~~ 186 (482)
--..+=|.||+|+||+++||.|-..
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL 340 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGL 340 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8878999889999989999999487
No 394
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=90.67 E-value=0.19 Score=29.84 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=20.4
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 4320488732777436799999984
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHE 185 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~ 185 (482)
.-..-+-|.||+|+||++++++|-.
T Consensus 39 ~~GE~lgiVGeSGsGKSTL~~~l~g 63 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTM 63 (327)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHC
T ss_conf 8999999999983199999999956
No 395
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=90.54 E-value=0.49 Score=26.92 Aligned_cols=37 Identities=22% Similarity=0.554 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9999999999982-8727899978489988999999981
Q gi|254780916|r 438 IEKEIIGLAMKLY-RAQMSEVARRLGIGRSTLYRKIREY 475 (482)
Q Consensus 438 ~E~~~I~~aL~~~-~Gn~~~aA~~LGIsR~tL~rKlk~~ 475 (482)
+.+.+|. +|++. .-..++-|+.+|+|++|.++|++++
T Consensus 4 ~D~~Il~-~L~~n~R~s~~~iA~~lg~S~~tv~~Ri~~L 41 (108)
T smart00344 4 IDRKILE-ELQKDARISLAELAKKVGLSPSTVHNRVKRL 41 (108)
T ss_pred HHHHHHH-HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999-9998289999999999893999999999999
No 396
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter; InterPro: IPR005898 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. This model describes a family of cyclic peptide transporters in bacteria. Syringomycin is an amphipathic, cyclic lipodepsipeptide when inserted into host causes formation of channels, permeable to a variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.; GO: 0005524 ATP binding, 0015197 peptide transporter activity, 0015833 peptide transport, 0016021 integral to membrane.
Probab=90.45 E-value=0.34 Score=28.03 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=31.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32048873277743679999998426754332101234655421
Q gi|254780916|r 162 CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQD 205 (482)
Q Consensus 162 ~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~ 205 (482)
+-.=|.|.||.||||+++++.+-....-.+|. +-+|.++.+++
T Consensus 367 ~G~~VyIVG~NGCGK~TL~K~l~GLY~PQ~G~-~LL~G~~V~~~ 409 (555)
T TIGR01194 367 SGDLVYIVGENGCGKSTLIKLLLGLYIPQEGE-LLLDGEAVSDD 409 (555)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCC-EEECCCCCCCC
T ss_conf 35289996488973899999997258787675-44357545633
No 397
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=90.45 E-value=0.22 Score=29.40 Aligned_cols=52 Identities=25% Similarity=0.349 Sum_probs=31.8
Q ss_pred CCCEEEEEECCCCCHHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCCCCHHH-HHC
Q ss_conf 432048873277743679999-99842675433210123465542100243-311
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSR-FIHESGKRAFFPFFIVNCGMIDQDKIEKF-LFG 213 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~-~iH~~s~r~~~~fi~v~c~~~~~~~~e~~-lFG 213 (482)
.-...+||.|++||||+.+|- ++++. .+...|-+-|.-..-++++.+.- -||
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~-~~~ge~vlyvs~~e~~~~l~~~~~~~g 74 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG-AREGEPVLYVSTEESPEELLENARSFG 74 (260)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH-HHCCCEEEEEEEECCHHHHHHHHHHCC
T ss_conf 899789999389986899999999977-626985899992069899999998809
No 398
>pfam00063 Myosin_head Myosin head (motor domain).
Probab=90.36 E-value=0.27 Score=28.83 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=19.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 432048873277743679999998
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIH 184 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH 184 (482)
..+..|+|.||+|+||+..++.|=
T Consensus 83 ~~~QsIiiSGESGAGKTes~K~il 106 (679)
T pfam00063 83 KENQCIVISGESGAGKTENTKKLM 106 (679)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 898279996788688899999999
No 399
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA; InterPro: IPR011917 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes .; GO: 0005524 ATP binding, 0006869 lipid transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=90.35 E-value=0.36 Score=27.86 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=29.2
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 2222222223443204887327774367999999
Q gi|254780916|r 150 IQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFI 183 (482)
Q Consensus 150 ~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~i 183 (482)
..+.+.+.-.+.--.-|=|.|-+|+||++++..|
T Consensus 375 ~~aL~~i~l~~~~G~~vALVGRSGSGKsTlv~Ll 408 (603)
T TIGR02203 375 RPALDSISLVVEPGETVALVGRSGSGKSTLVNLL 408 (603)
T ss_pred HHHHCCCCCEECCCCEEEEECCCCCHHHHHHHHC
T ss_conf 2412366651158735998706885389998552
No 400
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=90.33 E-value=1.5 Score=23.56 Aligned_cols=117 Identities=11% Similarity=0.103 Sum_probs=52.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-----CCHHHHHCCCCCCCCCCCC----CCCCCCCCCC
Q ss_conf 048873277743679999998426754332101234655421-----0024331125555322111----0012344667
Q gi|254780916|r 164 IPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQD-----KIEKFLFGDVDLQTKNSAQ----FLGKFIEANG 234 (482)
Q Consensus 164 ~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~-----~~e~~lFG~~~~~~~~~~~----~~g~~~~a~~ 234 (482)
.-|++.|..|+||+.+.+.+.........|-+-++|..+.-. .+.-.++- |+...+ ..-.+..|++
T Consensus 4 ~kIvilG~~~~GKTsil~r~~~~~f~~~~pTiG~~~~~~~~~~~~~~~v~l~iwD-----taGqe~~r~l~~~Y~r~a~g 78 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWD-----VGGQEKLRPLWKSYTRCTDG 78 (183)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEE-----CCCCCCCCEEHHHHHCCCCE
T ss_conf 9999999999988999999964986776870355789999961678667999997-----89873451008767467867
Q ss_pred CEEEECCCCHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 1475166420018-89998888776420011235532123431565214332111111233
Q gi|254780916|r 235 GTIVLEEPDALPL-AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVF 294 (482)
Q Consensus 235 Gtl~l~ei~~L~~-~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~f 294 (482)
-.+++|-.+.-+. +....|-.+++.. .....+ =+|.+...||...+.....
T Consensus 79 ~i~V~D~td~~~~~~~~~~l~~~~~~~------~~~~~p---iliv~NK~Dl~~~~~~~ei 130 (183)
T cd04152 79 IVFVVDSVDVERMEEAKTELHKITRFS------ENQGVP---VLVLANKQDLPNALSVSEV 130 (183)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCC------CCCCCE---EEEEEECCCCCCCCCHHHH
T ss_conf 899996776889999999999997321------237962---9999866777668788999
No 401
>PRK10869 recombination and repair protein; Provisional
Probab=90.30 E-value=0.33 Score=28.17 Aligned_cols=34 Identities=26% Similarity=0.228 Sum_probs=27.6
Q ss_pred EEEECCCCCHHHHHHHHHH-HCCCCCCCCCCCCCC
Q ss_conf 8873277743679999998-426754332101234
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIH-ESGKRAFFPFFIVNC 199 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH-~~s~r~~~~fi~v~c 199 (482)
..|+||||+||+.+-.+|. -.+.|++..+|.-.|
T Consensus 25 ~viTGETGAGKSill~al~lllG~ra~~~~ir~g~ 59 (553)
T PRK10869 25 TVITGETGAGKSIAIDALGLCLGGRAEASMVRPGA 59 (553)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 68778999879999999999848898846466999
No 402
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=90.28 E-value=0.14 Score=30.77 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=38.0
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 222222222344320488732777436799999984267543321012
Q gi|254780916|r 150 IQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIV 197 (482)
Q Consensus 150 ~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v 197 (482)
.++.+.++.+-....+|.|.|-|||||+++-++|=+.=+. +...|+|
T Consensus 145 g~~~~Fl~~Ai~~~knIii~GGTgSGKTTf~kal~~~IP~-~ER~iTI 191 (328)
T TIGR02788 145 GDIKEFLRLAIASRKNIIISGGTGSGKTTFLKALVKEIPK-DERLITI 191 (328)
T ss_pred CCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCC-CCCEEEE
T ss_conf 8887999999873891999906897189999999732762-2527888
No 403
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=90.28 E-value=0.73 Score=25.72 Aligned_cols=30 Identities=27% Similarity=0.650 Sum_probs=24.8
Q ss_pred CHHHHHHHHCCCHHHHHHH---HHHHCCCCCCC
Q ss_conf 2789997848998899999---99818881449
Q gi|254780916|r 453 QMSEVARRLGIGRSTLYRK---IREYNIEVDSL 482 (482)
Q Consensus 453 n~~~aA~~LGIsR~tL~rK---lk~~gi~~d~~ 482 (482)
.-.+-|+.|||||++.|+- ||+.|++|++.
T Consensus 21 SGe~La~~LgiSRtaVwK~Iq~Lr~~G~~I~s~ 53 (79)
T COG1654 21 SGEKLAEELGISRTAVWKHIQQLREEGVDIESV 53 (79)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEC
T ss_conf 689999997865999999999999809716860
No 404
>KOG2170 consensus
Probab=90.25 E-value=0.26 Score=28.87 Aligned_cols=195 Identities=16% Similarity=0.154 Sum_probs=91.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC---CCCEEEEE--ECCCCCHHHHHHHHHHHCC--CCCCCCCCCCCCCC--CCCCC---
Q ss_conf 1111222222222222222234---43204887--3277743679999998426--75433210123465--54210---
Q gi|254780916|r 139 LDSLIAVSPAMIQVVDLARKAG---DCAIPIMI--QGEFGVGKKRLSRFIHESG--KRAFFPFFIVNCGM--IDQDK--- 206 (482)
Q Consensus 139 ~~~LiG~S~~m~~v~~~i~~~a---~~~~~vli--~Ge~GtGK~~~A~~iH~~s--~r~~~~fi~v~c~~--~~~~~--- 206 (482)
...+.|+--+.+.|...++..- +...|..+ .|.+||||..+|+.|-++- ..-..|||..=.+. +|...
T Consensus 81 ~~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie 160 (344)
T KOG2170 81 ARALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIE 160 (344)
T ss_pred HHHHHCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHH
T ss_conf 99863208799999999999862899998758983089987564899999999875112562688765541599767899
Q ss_pred -CHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCEEEEECCCC
Q ss_conf -0243311255553221110012344667147516642001889998888776420011235-53212343156521433
Q gi|254780916|r 207 -IEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDS-RGAIRLDVRLIFLTEKN 284 (482)
Q Consensus 207 -~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~-~~~~~~~~RiIa~t~~~ 284 (482)
...+| ..+-.|-...+..-.+++||++.||+.+=.-|--+|+ |+|..+ ..-++ .=+|..+|.-
T Consensus 161 ~Yk~eL----------~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd---yyp~v~gv~frk--aIFIfLSN~g 225 (344)
T KOG2170 161 DYKEEL----------KNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD---YYPQVSGVDFRK--AIFIFLSNAG 225 (344)
T ss_pred HHHHHH----------HHHHHHHHHHCCCCEEEECHHHHCCHHHHHHHHHHHC---CCCCCCCCCCCC--EEEEEECCCC
T ss_conf 999999----------9999999985577548731054358769998766630---463213554551--4899971786
Q ss_pred C-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCC---
Q ss_conf 2-------111111233379998865433446778774422225566777641011-22333321111100012233---
Q gi|254780916|r 285 L-------LPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTK-NAIKQISISDKALSLLTKYP--- 353 (482)
Q Consensus 285 L-------~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~-~~~~~~~ls~~a~~~L~~y~--- 353 (482)
= -+..+.|.-|+|+ +-+|+.+... ...++.+ .|. ..|...-..|..|-
T Consensus 226 g~eI~~~aL~~~~~g~~re~~----------------~l~~~E~~L~--~~~~n~~~~Gl---~~S~li~~~lid~fIPF 284 (344)
T KOG2170 226 GSEIARIALENARNGKPREQL----------------RLKSFEPALM--QSAFNEKAGGL---VHSRLISNNLIDHFIPF 284 (344)
T ss_pred CHHHHHHHHHHHHCCCCCCCC----------------HHHHHHHHHH--HHHHCCCCCCC---CCCCCCHHHHHHHCCCC
T ss_conf 147799999999747975645----------------2655269998--75535445664---01421546677650576
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 8986899999999998
Q gi|254780916|r 354 WIDNVQELKNILLRAV 369 (482)
Q Consensus 354 WPGNvREL~n~i~r~~ 369 (482)
-|.--|-.+..++-.+
T Consensus 285 LPLek~hV~~C~r~el 300 (344)
T KOG2170 285 LPLEKRHVRSCIRAEL 300 (344)
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 7623899999999999
No 405
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.25 E-value=1.4 Score=23.78 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=13.2
Q ss_pred HHCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 828727899978489988999999
Q gi|254780916|r 449 LYRAQMSEVARRLGIGRSTLYRKI 472 (482)
Q Consensus 449 ~~~Gn~~~aA~~LGIsR~tL~rKl 472 (482)
..+-.-.+-|+.|+||-+|...-+
T Consensus 851 a~GlSNkeIA~~L~IS~~TVK~Hl 874 (903)
T PRK04841 851 YSGYSNEQIAGELDVAATTIKTHI 874 (903)
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 768999999988199876999999
No 406
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=90.25 E-value=0.22 Score=29.44 Aligned_cols=28 Identities=29% Similarity=0.191 Sum_probs=22.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 4320488732777436799999984267
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGK 188 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~ 188 (482)
....-+-|.||+|+||+++|++|-..-+
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 5896899983897889999999984668
No 407
>pfam06322 Phage_NinH Phage NinH protein. This family consists of several phage NinH proteins. The function of this family is unknown.
Probab=90.16 E-value=0.36 Score=27.90 Aligned_cols=34 Identities=26% Similarity=0.241 Sum_probs=28.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9999999828727899978489988999999981
Q gi|254780916|r 442 IIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREY 475 (482)
Q Consensus 442 ~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~~ 475 (482)
-|-..|-++.||++++|+.|+-+|+|.++....-
T Consensus 7 TIPelLi~~~GN~teVaR~L~c~R~TVrkY~~D~ 40 (64)
T pfam06322 7 TIPDMLIETYGNQTEVARRLNCSRNTVRKYAEDK 40 (64)
T ss_pred EHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHCCC
T ss_conf 1489999970779999788511088899872355
No 408
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=90.05 E-value=0.28 Score=28.66 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=24.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 48873277743679999998426754332101234
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNC 199 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c 199 (482)
.|+|.|.+|+||.+.|+.|.+. -++..++-
T Consensus 2 riiilG~pGaGK~T~A~~La~~-----~~i~hlst 31 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK-----LGLPHLDT 31 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-----CCCCEECC
T ss_conf 7999899999889999999997-----69978552
No 409
>KOG0736 consensus
Probab=90.00 E-value=0.24 Score=29.15 Aligned_cols=193 Identities=18% Similarity=0.183 Sum_probs=87.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---CHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 4320488732777436799999984267543321012346554210---0243311255553221110012344667147
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDK---IEKFLFGDVDLQTKNSAQFLGKFIEANGGTI 237 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~---~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl 237 (482)
+-+..||+.|++|+||+.+.++.-.. -.-++..|+|..+..+. .|..| .+...+. .....-.|
T Consensus 429 ~~~~~vLLhG~~g~GK~t~V~~vas~---lg~h~~evdc~el~~~s~~~~etkl--------~~~f~~a---~~~~pavi 494 (953)
T KOG0736 429 TLNPSVLLHGPPGSGKTTVVRAVASE---LGLHLLEVDCYELVAESASHTETKL--------QAIFSRA---RRCSPAVL 494 (953)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH---HCCCEEECCHHHHHHCCCCHHHHHH--------HHHHHHH---HHCCCEEE
T ss_conf 35537998679998757999999998---3872570138988643633137899--------9999987---52686289
Q ss_pred EECCCCHHHHH----HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 51664200188----99988887764200112355321234315652143--3211111123337999886543344677
Q gi|254780916|r 238 VLEEPDALPLA----VQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEK--NLLPQVKSHVFRKDLYYRISVFLINIST 311 (482)
Q Consensus 238 ~l~ei~~L~~~----~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~--~L~~~~~~g~fr~dLy~rL~~~~i~iPp 311 (482)
||.+.+-+..+ .-.+++.+++..-- ...-+-..-.+-+|++|+. ++...+.. .| -++|.+|.
T Consensus 495 fl~~~dvl~id~dgged~rl~~~i~~~ls--~e~~~~~~~~~ivv~t~~s~~~lp~~i~~-~f---------~~ei~~~~ 562 (953)
T KOG0736 495 FLRNLDVLGIDQDGGEDARLLKVIRHLLS--NEDFKFSCPPVIVVATTSSIEDLPADIQS-LF---------LHEIEVPA 562 (953)
T ss_pred EEECCCEEEECCCCCHHHHHHHHHHHHHH--CCCCCCCCCCEEEEEECCCCCCCCHHHHH-HH---------HHHCCCCC
T ss_conf 87224245533777442779999999972--02356779965999962530239878987-52---------65213778
Q ss_pred HH--HHHHHHHHHHHHHHHHHC--C-----CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH------------H
Q ss_conf 87--744222255667776410--1-----1223333211111000122338986899999999998------------7
Q gi|254780916|r 312 LR--SRSEDIPWLVHFFLQSFC--T-----KNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAV------------I 370 (482)
Q Consensus 312 LR--eR~eDI~~L~~~fl~~~~--~-----~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~------------i 370 (482)
|. +|. .+.++|+.... + ..-....+|+..-++.|..+- -++-+.-|++.- +
T Consensus 563 lse~qRl----~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~----s~~~~~~i~~~~l~g~~~~~~~~~~ 634 (953)
T KOG0736 563 LSEEQRL----EILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHS----SLAAKTRIKNKGLAGGLQEEDEGEL 634 (953)
T ss_pred CCHHHHH----HHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCC----HHHHHHHHHHHCCCCCCHHCCCCCC
T ss_conf 8878899----9999998306523577878999865898777799771475----1888999975201443111024540
Q ss_pred HCCCCCCCHHHHHHHHC
Q ss_conf 43898106889545421
Q gi|254780916|r 371 GLKDSHLTEDRFVLLLS 387 (482)
Q Consensus 371 ~~~~~~i~~~~~~~~l~ 387 (482)
...+..++.+|+...+.
T Consensus 635 ~~~~~~l~~edf~kals 651 (953)
T KOG0736 635 CAAGFLLTEEDFDKALS 651 (953)
T ss_pred CCCCCEECHHHHHHHHH
T ss_conf 12464101988888988
No 410
>PRK13698 plasmid-partitioning protein; Provisional
Probab=89.90 E-value=1.3 Score=23.95 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=9.3
Q ss_pred HHCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 8287278999784899889999999
Q gi|254780916|r 449 LYRAQMSEVARRLGIGRSTLYRKIR 473 (482)
Q Consensus 449 ~~~Gn~~~aA~~LGIsR~tL~rKlk 473 (482)
.++||+++.|+.+|+||+-+.|-|+
T Consensus 174 ~~~gnqs~lAe~~~iSra~vsR~i~ 198 (323)
T PRK13698 174 EFAGNISALADAENISRKIITRCIN 198 (323)
T ss_pred HHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 4046699999985889999998887
No 411
>PRK05541 adenylylsulfate kinase; Provisional
Probab=89.90 E-value=0.22 Score=29.38 Aligned_cols=47 Identities=26% Similarity=0.383 Sum_probs=31.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 32048873277743679999998426754332101234655421002433112
Q gi|254780916|r 162 CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGD 214 (482)
Q Consensus 162 ~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~ 214 (482)
...-|.|+|=+|+||+++|+.++..-.....+.+.+ +.+.+- ++|+.
T Consensus 6 kg~viW~TGLsGSGKTTiA~~l~~~L~~~g~~~~~L-----DGD~lR-~~~~~ 52 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYL-----DGDELR-EIFGH 52 (176)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE-----CCHHHH-HHHCC
T ss_conf 867999789999989999999999999759977998-----868999-87365
No 412
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=89.83 E-value=1.6 Score=23.29 Aligned_cols=119 Identities=11% Similarity=0.188 Sum_probs=53.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC----CCCCCCCCCCE
Q ss_conf 43204887327774367999999842675433210123465542100243311255553221110----01234466714
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQF----LGKFIEANGGT 236 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~----~g~~~~a~~Gt 236 (482)
+-..-|++.|..|+||+.+-+.+.........|-+-+|...+....+.-.++- ++...+. .-.+..|++-.
T Consensus 15 kk~~kililGl~~sGKTsil~~l~~~~~~~~~pTvg~~~~~~~~~~~~l~iwD-----~~Gqe~~r~lw~~yy~~~~giI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWD-----VGGQDKLRPLWRHYYQNTNGII 89 (182)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEEEE-----CCCCCCCCHHHHHCCCCCCEEE
T ss_conf 87479999967998899999999629977737868845699997888999998-----9998454747876056764499
Q ss_pred EEECCCCHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHH
Q ss_conf 751664200188-999888877642001123553212343156521433211111123
Q gi|254780916|r 237 IVLEEPDALPLA-VQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHV 293 (482)
Q Consensus 237 l~l~ei~~L~~~-~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~ 293 (482)
+++|--+.-... ....|-.++.+... ...+ =+|.+...|+.+.+....
T Consensus 90 ~VvD~sd~~~~~~~~~~l~~~l~~~~~------~~~p---iLi~~NK~Dl~~a~~~~e 138 (182)
T PTZ00133 90 FVVDSNDRERIGDARQELEKMLAEDEL------RNAV---LLVFANKQDLPNAMSTTE 138 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHCCHHH------CCCE---EEEEECCCCCCCCCCHHH
T ss_conf 999667878999999999999714422------4885---999970668778889999
No 413
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=89.74 E-value=0.28 Score=28.70 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=19.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 432048873277743679999998
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIH 184 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH 184 (482)
..+..|+|.||+|+||+..++.|=
T Consensus 84 ~~~QsIiiSGESGaGKTe~~K~il 107 (671)
T cd01381 84 KKNQCIIISGESGAGKTESTKLIL 107 (671)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 999679995799888799999999
No 414
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=89.74 E-value=1.6 Score=23.24 Aligned_cols=121 Identities=12% Similarity=0.202 Sum_probs=59.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCC----CCCCCCCCCCCE
Q ss_conf 4320488732777436799999984267543321012346554210024331125555322111----001234466714
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQ----FLGKFIEANGGT 236 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~----~~g~~~~a~~Gt 236 (482)
+-..-|++.|..|+||+.+-+.++........|-+-+|+..+.-....-.++- ++...+ ..-.+..|++-.
T Consensus 7 kk~~kililG~~~sGKTsil~~l~~~~~~~~~pTvg~~~~~~~~~~~~l~iwD-----~~Gqe~~r~l~~~y~~~~~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWD-----VGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEE-----CCCCCCCCCHHHHHCCCCCEEE
T ss_conf 88889999999999989999999669987602626700799998988999998-----9999746606576437886689
Q ss_pred EEECCCCHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHH
Q ss_conf 75166420018-899988887764200112355321234315652143321111112333
Q gi|254780916|r 237 IVLEEPDALPL-AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFR 295 (482)
Q Consensus 237 l~l~ei~~L~~-~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr 295 (482)
+++|--+.-.. +....|..++++... ...+ =+|.+...|+.+.+......
T Consensus 82 fVvDstd~~~~~~~~~~l~~~l~~~~~------~~~p---ilI~~NK~Dl~~~~~~~ei~ 132 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREM------RDAL---LLVFANKQDLPDAMKPHEIQ 132 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHCHHH------CCCE---EEEEEECCCCCCCCCHHHHH
T ss_conf 998377678999999999999714522------7986---99999756677788999999
No 415
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=89.71 E-value=0.29 Score=28.61 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=34.1
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCC----HHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 4320488732777436799999984-2675433210123465542100----243311255553221110012344
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHE-SGKRAFFPFFIVNCGMIDQDKI----EKFLFGDVDLQTKNSAQFLGKFIE 231 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~-~s~r~~~~fi~v~c~~~~~~~~----e~~lFG~~~~~~~~~~~~~g~~~~ 231 (482)
..+..|+|.||+|+||+..++.|=+ ....+.+. .+....+ --|=||..+-.....+.|-|++-+
T Consensus 90 ~~nQsIiiSGESGaGKTe~~K~il~yL~~~~~~~-------~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~ 158 (677)
T cd01383 90 EVNQSIIISGESGAGKTETAKIAMQYLASLGGGS-------GIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIE 158 (677)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-------CHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCEEEE
T ss_conf 8980899967888985899999999987626897-------18999987210998863456457888777412235
No 416
>KOG3347 consensus
Probab=89.70 E-value=0.2 Score=29.68 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=28.3
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 3204887327774367999999842675433210123465542
Q gi|254780916|r 162 CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQ 204 (482)
Q Consensus 162 ~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~ 204 (482)
-.-++||+|-+||||+++|..|-... -|.-++|+.+-.
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~-----~~~~i~isd~vk 43 (176)
T KOG3347 6 ERPNILVTGTPGTGKSTLAERLAEKT-----GLEYIEISDLVK 43 (176)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHH-----CCCEEEHHHHHH
T ss_conf 37887986799988025999999973-----985674556776
No 417
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=89.67 E-value=0.27 Score=28.82 Aligned_cols=100 Identities=21% Similarity=0.276 Sum_probs=53.4
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCC---CCCCCCC----CCHHH--HHC--------CCCCCCCCCC
Q ss_conf 43204887327774367999999842675433210123---4655421----00243--311--------2555532211
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVN---CGMIDQD----KIEKF--LFG--------DVDLQTKNSA 223 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~---c~~~~~~----~~e~~--lFG--------~~~~~~~~~~ 223 (482)
.-...+-|.||+|+||+++||.|-..-.-..|. |.++ ...++.+ .+... ..| +...+.|...
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~-i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSGE-ILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCE-EEECCCCHHHCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHH
T ss_conf 589878999368887787999997283888726-9986853111366679999999999809887786338830373133
Q ss_pred CCCCCC--CCCCCCEEEECCCCH-HHHHHHHHHHHHHHHHH
Q ss_conf 100123--446671475166420-01889998888776420
Q gi|254780916|r 224 QFLGKF--IEANGGTIVLEEPDA-LPLAVQGRIYNFIETGK 261 (482)
Q Consensus 224 ~~~g~~--~~a~~Gtl~l~ei~~-L~~~~Q~~Ll~~l~~~~ 261 (482)
+|.+.= -.-+---++.||.-. |..++|+..+++|.+-+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~~lq 156 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ 156 (268)
T ss_pred HHHHHHHHHHHCCCEEEECCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 56999999850986797437211012467999999999999
No 418
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=89.62 E-value=1.7 Score=23.18 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=20.5
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 4320488732777436799999984
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHE 185 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~ 185 (482)
....-+-|.|++|+||+++++.|-.
T Consensus 284 ~~GE~~~i~G~nGsGKSTLl~~l~G 308 (490)
T PRK10938 284 NPGEHWQIVGPNGAGKSTLLSLITG 308 (490)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 3898899986788879999999808
No 419
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=89.53 E-value=0.29 Score=28.51 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=20.5
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 4320488732777436799999984
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHE 185 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~ 185 (482)
..+..|+|.||+|+||+..++.|=+
T Consensus 89 ~~~QsIiiSGESGAGKTestK~il~ 113 (717)
T cd01382 89 KMSQSIIVSGESGAGKTENTKFVLR 113 (717)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 9994799966899997899999999
No 420
>TIGR01978 sufC FeS assembly ATPase SufC; InterPro: IPR010230 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufC, which acts as an ATPase in the SUF system. SufC belongs to the ATP-binding cassette transporter family (IPR003439 from INTERPRO) but is no longer thought to be part of a transporter. The complex is reported as cytosolic or associated with the membrane.; GO: 0005524 ATP binding, 0006810 transport.
Probab=89.52 E-value=0.4 Score=27.61 Aligned_cols=29 Identities=38% Similarity=0.363 Sum_probs=21.4
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 20488732777436799999984267543321012
Q gi|254780916|r 163 AIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIV 197 (482)
Q Consensus 163 ~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v 197 (482)
-.=+-|.|+.|+||++++.+| +.+|=..|
T Consensus 26 GE~HAiMGPNGsGKSTL~~~i------aGhp~y~v 54 (248)
T TIGR01978 26 GEIHAIMGPNGSGKSTLSKTI------AGHPKYEV 54 (248)
T ss_pred CEEEEEECCCCCCHHHHHHHH------HCCCCEEE
T ss_conf 517998688998478887776------17993378
No 421
>pfam01057 Parvo_NS1 Parvovirus non-structural protein NS1. This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity.
Probab=89.49 E-value=1.7 Score=23.11 Aligned_cols=121 Identities=16% Similarity=0.199 Sum_probs=60.0
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 23443204887327774367999999842675433210123465542100243311255553221110012344667147
Q gi|254780916|r 158 KAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTI 237 (482)
Q Consensus 158 ~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl 237 (482)
+-..-.-.|.+.|++.|||+++|.+|-+..+. |-.||-+ ...+ -+........++.| .|+.
T Consensus 108 k~~~krN~i~~~Gp~~TGks~la~ai~~~~~~----~g~v~~~---N~~f---------p~~d~~~~~~~wwe---e~~~ 168 (271)
T pfam01057 108 KQGGKRNTVWFYGPASTGKTNLAQAIAHAVPL----YGCVNWT---NENF---------PFNDCPNKLLIWWE---EGLM 168 (271)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC----EEEECCC---CCCC---------CCCCCCCCEEEEEC---CCCC
T ss_conf 47888756999889876789999999986895----2785178---7788---------76446547899980---7887
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCC-CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5166420018899988887764200112355--321234-3156521433211111123337999886543344677877
Q gi|254780916|r 238 VLEEPDALPLAVQGRIYNFIETGKIEFFDSR--GAIRLD-VRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRS 314 (482)
Q Consensus 238 ~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~-~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLRe 314 (482)
+-+ ..-++|.+.+|.--++.-. .+..+. .=+|-+|+.|+-..+.-+.. ...+.-||++
T Consensus 169 ~~~---------~ve~~r~il~G~~i~vD~k~k~~~~l~~~PviiTsn~di~~v~~g~~~----------s~~Ha~~Lk~ 229 (271)
T pfam01057 169 TVK---------VVELAKAILGGTDVRVDQKCKGSVEIEPTPVIITSNHDITLVVDGNTT----------SFEHAQPLKD 229 (271)
T ss_pred CHH---------HHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEECCCEEEEEECCCC----------CHHHHHHHHH
T ss_conf 188---------999999972999625634789800237997899827857999868753----------5777778765
Q ss_pred HH
Q ss_conf 44
Q gi|254780916|r 315 RS 316 (482)
Q Consensus 315 R~ 316 (482)
|.
T Consensus 230 rm 231 (271)
T pfam01057 230 RM 231 (271)
T ss_pred HE
T ss_conf 36
No 422
>PRK09522 bifunctional anthranilate synthase/anthranilate phosphoribosyltransferase; Provisional
Probab=89.48 E-value=1.7 Score=23.11 Aligned_cols=77 Identities=18% Similarity=0.169 Sum_probs=55.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH-----HHHHHHCCCCCEEEEECC--CCCCCHHHHHHHHHHHCCCCC
Q ss_conf 8838998699899999999999889889998937-----999986089989999785--469888999999998578983
Q gi|254780916|r 10 HKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS-----DLSTISKIQVNVIFLSLI--NCEDDKENILKNIVDKIPIVP 82 (482)
Q Consensus 10 ~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~-----al~~l~~~~~dlillD~~--mP~~dGlell~~i~~~~p~ip 82 (482)
++|||+||.-.++-..+..+|+..|.+|.+..+. .++.+...+|+.|++.=- .|...|. ...-++.....+|
T Consensus 1 M~~ILlIDNyDSFTyNL~~~l~~~g~~v~V~rnd~~~~~~~e~~~~~~p~~IVlSPGPG~P~dag~-~~~ii~~~~~~iP 79 (531)
T PRK09522 1 MADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGC-MPELLTRLRGKLP 79 (531)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCHHCCC-HHHHHHHHCCCCC
T ss_conf 970999828886288999999866995699969983130199997249596998999989023657-3999998659999
Q ss_pred EEEEE
Q ss_conf 99992
Q gi|254780916|r 83 IIVQT 87 (482)
Q Consensus 83 vIiiT 87 (482)
|+=+-
T Consensus 80 ILGIC 84 (531)
T PRK09522 80 IIGIC 84 (531)
T ss_pred EEEEC
T ss_conf 89987
No 423
>PRK04217 hypothetical protein; Provisional
Probab=89.41 E-value=0.84 Score=25.30 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 899999999999999982872789997848998899999998
Q gi|254780916|r 433 RRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIRE 474 (482)
Q Consensus 433 ~~l~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~ 474 (482)
.+++|+|-- ......+-++.+||+..||||+|++|-+..
T Consensus 43 LtvdE~Eai---RL~D~egl~qeeaA~~M~VSR~Tf~ril~~ 81 (110)
T PRK04217 43 MTYEEFEAL---RLVDYEGLTQEEAGKRMGVSRGTVWRALTS 81 (110)
T ss_pred ECHHHHHHH---HHHHHCCCCHHHHHHHCCCCHHHHHHHHHH
T ss_conf 119999999---987360798999998849769999999999
No 424
>pfam02796 HTH_7 Helix-turn-helix domain of resolvase.
Probab=89.38 E-value=0.48 Score=27.05 Aligned_cols=30 Identities=27% Similarity=0.489 Sum_probs=24.5
Q ss_pred HHHHHHCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999982872789997848998899999998
Q gi|254780916|r 445 LAMKLYRAQMSEVARRLGIGRSTLYRKIRE 474 (482)
Q Consensus 445 ~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~ 474 (482)
..|-..+-.+.+.|+..||||+|+||++.+
T Consensus 15 ~~L~~~G~~i~~IA~~~~vsrsTvYRyl~~ 44 (45)
T pfam02796 15 ITLLEEGISIKQIAKIFGISRSTVYRYLAA 44 (45)
T ss_pred HHHHHCCCCHHHHHHHHCCHHHHHHHHCCC
T ss_conf 999987994999999986008888764458
No 425
>pfam00025 Arf ADP-ribosylation factor family. Pfam combines a number of different Prosite families together
Probab=89.34 E-value=1.8 Score=23.04 Aligned_cols=117 Identities=10% Similarity=0.148 Sum_probs=51.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCC----CCCCCCCCCCCEEE
Q ss_conf 20488732777436799999984267543321012346554210024331125555322111----00123446671475
Q gi|254780916|r 163 AIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQ----FLGKFIEANGGTIV 238 (482)
Q Consensus 163 ~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~----~~g~~~~a~~Gtl~ 238 (482)
..-|++.|.+|+||+.+-+.+.....-...|=+-++...+.-..+.-.++- |+...+ ....+..|++-.++
T Consensus 14 ~~Ki~llG~~~vGKTsll~~~~~~~~~~~~pTig~~~~~v~~~~~~~~iwD-----t~Gqe~~~~~~~~y~~~a~~ii~V 88 (174)
T pfam00025 14 EMRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKFTVWD-----VGGQESLRPLWRNYFPNTDAVIFV 88 (174)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEE-----CCCCCCCCHHHHHHHCCCCEEEEE
T ss_conf 669999999999889999999549988744746823899998999999982-----798702326799884178268999
Q ss_pred ECCCCHH-HH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 1664200-18-89998888776420011235532123431565214332111111233
Q gi|254780916|r 239 LEEPDAL-PL-AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVF 294 (482)
Q Consensus 239 l~ei~~L-~~-~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~f 294 (482)
+| +.+. +. ..+..+-.++++.. ....+ -+|+++..||.+.+.....
T Consensus 89 ~D-~t~~~s~~~~~~~l~~~l~~~~------~~~~p---iliv~NK~DL~~~~~~~ei 136 (174)
T pfam00025 89 VD-SADRDRIEEAKEELHALLNEEE------LADAP---LLILANKQDLPGAMSEAEI 136 (174)
T ss_pred EE-CCCHHHHHHHHHHHHHHHHHHC------CCCCE---EEEEEECCCCCCCCCHHHH
T ss_conf 86-7867879999999999875423------58970---8998725667678999999
No 426
>PRK03846 adenylylsulfate kinase; Provisional
Probab=89.31 E-value=0.24 Score=29.10 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=29.8
Q ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 223443204887327774367999999842675433210123
Q gi|254780916|r 157 RKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVN 198 (482)
Q Consensus 157 ~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~ 198 (482)
++..+...-|.|+|-+|+||+++|+.+...-.....+.+.+|
T Consensus 18 ~~~~~kg~viWlTGLSGSGKTTlA~~L~~~L~~~~~~~~~LD 59 (198)
T PRK03846 18 QLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVHTYLLD 59 (198)
T ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 986899869998799999889999999999997599759977
No 427
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=89.21 E-value=0.31 Score=28.35 Aligned_cols=26 Identities=31% Similarity=0.162 Sum_probs=21.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 43204887327774367999999842
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHES 186 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~ 186 (482)
....-+-|.||+|+||++++++|-..
T Consensus 31 ~~GEilgivGeSGsGKSTl~~~ilgl 56 (327)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGL 56 (327)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89999999999987899999999748
No 428
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.15 E-value=0.4 Score=27.56 Aligned_cols=36 Identities=25% Similarity=0.472 Sum_probs=23.3
Q ss_pred CEEEEEECCCCCHHHH-HHH----HHHHCCCCCCCCCCCCCC
Q ss_conf 2048873277743679-999----998426754332101234
Q gi|254780916|r 163 AIPIMIQGEFGVGKKR-LSR----FIHESGKRAFFPFFIVNC 199 (482)
Q Consensus 163 ~~~vli~Ge~GtGK~~-~A~----~iH~~s~r~~~~fi~v~c 199 (482)
..-|.+.|++|+||++ +|+ +...++.++- -||++||
T Consensus 210 ~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV-~lIT~Dt 250 (412)
T PRK05703 210 GGVVALVGPTGVGKTTTLAKLAARYALEEGKDKV-ALITLDT 250 (412)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEE-EEEEECC
T ss_conf 7369998888875676999999999997299817-9998376
No 429
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=89.14 E-value=1.4 Score=23.76 Aligned_cols=98 Identities=14% Similarity=0.078 Sum_probs=50.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCC----CCCCCCCCC-CCCCCCC----CCCCHHHHHCCCCCCC-CCCCCCC--CC
Q ss_conf 432048873277743679999998426----754332101-2346554----2100243311255553-2211100--12
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESG----KRAFFPFFI-VNCGMID----QDKIEKFLFGDVDLQT-KNSAQFL--GK 228 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s----~r~~~~fi~-v~c~~~~----~~~~e~~lFG~~~~~~-~~~~~~~--g~ 228 (482)
....-.||.|+.|+||..+|+++=..= +....|-=. -+|.-+. +|.. .+.-++++.+ +-..-|. ..
T Consensus 22 rl~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~~C~l~~~~~HPD~~--~i~pe~~~~~I~IdqIR~l~~~ 99 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYY--TLTPEKGKSSLGVDAVREVTEK 99 (334)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEE--EECCCCCCCCCCHHHHHHHHHH
T ss_conf 81046754799998899999999999818999999999999789998668999847--7534223455999999999999
Q ss_pred C----CCCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 3----4466714751664200188999888877642
Q gi|254780916|r 229 F----IEANGGTIVLEEPDALPLAVQGRIYNFIETG 260 (482)
Q Consensus 229 ~----~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~ 260 (482)
+ .+...-.+++++.+.|..+.+..||..|||.
T Consensus 100 ~~~~~~~g~~kV~iI~~Ae~mn~~AaNaLLKtLEEP 135 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEP 135 (334)
T ss_pred HHHCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCC
T ss_conf 843665699479997667775999999999861279
No 430
>PRK06761 hypothetical protein; Provisional
Probab=89.11 E-value=1.6 Score=23.28 Aligned_cols=83 Identities=19% Similarity=0.125 Sum_probs=46.5
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCC
Q ss_conf 15652143321111112333799988654334467787744222255667776410112233332---111110001223
Q gi|254780916|r 276 RLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQIS---ISDKALSLLTKY 352 (482)
Q Consensus 276 RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~---ls~~a~~~L~~y 352 (482)
+.|..+..+ .|.++||+-++...|.=-|+-.-.+=+..-++.|.++.......-+.. |-...-..+..|
T Consensus 88 ~k~~~~~~~--------~~~d~L~~~~~k~diY~lp~~~~~~~~~~rWr~Fa~~a~~~~~v~IFec~l~qnplt~lm~~y 159 (281)
T PRK06761 88 RKIKNEFGD--------QFSDELFNDISRNEIYEVPFDKFVELIADKWKDFAEIALEDNKVYIFECCLIQNPLNILMIKY 159 (281)
T ss_pred EECHHCCCC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCHHHHHHHHC
T ss_conf 100010477--------667377766425256408999999999999999998406788649997354368189999985
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 3898689999999999
Q gi|254780916|r 353 PWIDNVQELKNILLRA 368 (482)
Q Consensus 353 ~WPGNvREL~n~i~r~ 368 (482)
+-|- -++.+-|..+
T Consensus 160 ~~~~--~~i~~Yi~~L 173 (281)
T PRK06761 160 GAQE--EKIINYIMKL 173 (281)
T ss_pred CCCH--HHHHHHHHHH
T ss_conf 9988--9999999999
No 431
>TIGR01764 excise DNA binding domain, excisionase family; InterPro: IPR010093 An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This entry represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This entry identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (IPR000551 from INTERPRO).; GO: 0003677 DNA binding.
Probab=89.08 E-value=0.35 Score=28.02 Aligned_cols=26 Identities=38% Similarity=0.609 Sum_probs=22.9
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf 78999784899889999999818881
Q gi|254780916|r 454 MSEVARRLGIGRSTLYRKIREYNIEV 479 (482)
Q Consensus 454 ~~~aA~~LGIsR~tL~rKlk~~gi~~ 479 (482)
+.+||+.||+++.|+|+.+++=.|..
T Consensus 4 v~EaA~yLgv~~~t~~~l~~~g~l~~ 29 (49)
T TIGR01764 4 VEEAAEYLGVSKSTVYRLIEEGELPA 29 (49)
T ss_pred HHHHHHHCCCCHHHHHHHHHCCCCCE
T ss_conf 78899771999057899997189850
No 432
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=89.08 E-value=0.28 Score=28.68 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=23.2
Q ss_pred CCCEEEEEECCCCCHHHHHHH-HHHHCCCCCCCCCCCC
Q ss_conf 432048873277743679999-9984267543321012
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSR-FIHESGKRAFFPFFIV 197 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~-~iH~~s~r~~~~fi~v 197 (482)
.....+||.|++||||+.+|. .+|..-. .+.+-+.+
T Consensus 30 p~g~~~li~G~~G~GKt~~~~~f~~~~~~-~g~~~~~~ 66 (241)
T PRK06067 30 PFGSLILIEGENDTGKSVLSQQFVWGALN-QGKRGLAI 66 (241)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEE
T ss_conf 79908999807998879999999999986-79829999
No 433
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=89.07 E-value=0.2 Score=29.63 Aligned_cols=53 Identities=21% Similarity=0.413 Sum_probs=36.9
Q ss_pred CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 6714751664200188999888877642001123553212343156521433211111123337999
Q gi|254780916|r 233 NGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLY 299 (482)
Q Consensus 233 ~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~dLy 299 (482)
.-..|++||-.=++.++=.+|+++|..+ +|+|.-=..|=-.-|+.|.--.||.
T Consensus 260 ~~DvlIVDEASMVDl~Lm~~LL~Alp~~--------------aRLILvGD~dQLpSVgaGaVL~DL~ 312 (607)
T PRK10875 260 HLDVLVVDEASMIDLPMMSRLIDALPDH--------------ARVIFLGDRDQLASVEAGAVLGDIC 312 (607)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHCCCC--------------CEEEEECCHHHCCCCCCCCCHHHHH
T ss_conf 8898999073366599999999828999--------------8899965623247888882179999
No 434
>pfam00931 NB-ARC NB-ARC domain.
Probab=89.04 E-value=0.26 Score=28.93 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=26.5
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 222222222234432048873277743679999998426
Q gi|254780916|r 149 MIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESG 187 (482)
Q Consensus 149 m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s 187 (482)
|.++.+.+......-.-|-|.|-.|.||+++|+.+++..
T Consensus 5 ~~~i~~~L~~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~ 43 (285)
T pfam00931 5 IEALIEKLLEMSENLGVVGIVGMGGVGKTTLAKQIYNDD 43 (285)
T ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCH
T ss_conf 999999986489895399988999563999999997165
No 435
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.03 E-value=0.39 Score=27.64 Aligned_cols=34 Identities=26% Similarity=0.299 Sum_probs=27.9
Q ss_pred EEEECCCCCHHHHHHHHHH-HCCCCCCCCCCCCCC
Q ss_conf 8873277743679999998-426754332101234
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIH-ESGKRAFFPFFIVNC 199 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH-~~s~r~~~~fi~v~c 199 (482)
-.|+||||.||+.+-.+|. -.+.|++..+|.-.|
T Consensus 24 nVlTGETGAGKSIlidAL~lllG~Ra~~~~IR~g~ 58 (276)
T cd03241 24 TVLTGETGAGKSILLDALSLLLGGRASADLIRSGA 58 (276)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 58878998889999999999628998845335888
No 436
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=89.01 E-value=0.36 Score=27.89 Aligned_cols=65 Identities=26% Similarity=0.306 Sum_probs=33.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCC----HHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 4320488732777436799999984-2675433210123465542100----24331125555322111001234
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHE-SGKRAFFPFFIVNCGMIDQDKI----EKFLFGDVDLQTKNSAQFLGKFI 230 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~-~s~r~~~~fi~v~c~~~~~~~~----e~~lFG~~~~~~~~~~~~~g~~~ 230 (482)
..+..|+|.||+|+||+..++.|=+ ....+.+. ...+.+-.+ --|=||..+-...+.+.|-|++-
T Consensus 84 ~~~QsIiisGESGaGKTes~K~il~yL~~~~~~~-----~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFGK~~ 153 (679)
T cd00124 84 RRNQSIIISGESGAGKTENTKLIMKYLASLAGSN-----DTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFI 153 (679)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
T ss_conf 9996799967898888899999999999870799-----973999999861799976233567899746521578
No 437
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=88.99 E-value=0.03 Score=35.48 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=70.4
Q ss_pred CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCEEEEECCCCCCCCCCHH----HHHHHHHHHHHHHHH
Q ss_conf 671475166420018899988887764200112355-321234315652143321111112----333799988654334
Q gi|254780916|r 233 NGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSR-GAIRLDVRLIFLTEKNLLPQVKSH----VFRKDLYYRISVFLI 307 (482)
Q Consensus 233 ~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~-~~~~~~~RiIa~t~~~L~~~~~~g----~fr~dLy~rL~~~~i 307 (482)
..|.+.|.|++.+..+.|.. .-..+|+|=+ .-.++|-|+ .-|+-++ -++| +.---|.++|
T Consensus 471 rDG~~LL~EL~A~~~~~~~~------~~~LTPiGRQLaqlPvDPRL--------ARMllEa~rlGcL~E-vlIi~sALSi 535 (1320)
T TIGR01967 471 RDGFRLLEELGALKEDEAED------SIQLTPIGRQLAQLPVDPRL--------ARMLLEAHRLGCLQE-VLIIASALSI 535 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHCC------CCCCCCCHHHHHHCCCCHHH--------HHHHHHHHHCCCCCH-HHHHHHHCCC
T ss_conf 77668998621433454303------44568411346443787005--------789999964177526-8998852224
Q ss_pred HHHHHHHHHHH---------------------HHHHHHHHHHHHCCCCCCCC--CCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 46778774422---------------------22556677764101122333--32111110001223389868999999
Q gi|254780916|r 308 NISTLRSRSED---------------------IPWLVHFFLQSFCTKNAIKQ--ISISDKALSLLTKYPWIDNVQELKNI 364 (482)
Q Consensus 308 ~iPpLReR~eD---------------------I~~L~~~fl~~~~~~~~~~~--~~ls~~a~~~L~~y~WPGNvREL~n~ 364 (482)
. ==|||+.| ..-|++||=++.-+...... +.+-++.+..|.--.|=-=++||+.+
T Consensus 536 Q--DPRERP~~~qqaaDq~HaRF~d~~SDF~~~v~LW~~~~Eqa~~alS~n~fR~~~rk~yL~YLRvREWqD~~~QL~q~ 613 (1320)
T TIGR01967 536 Q--DPRERPMEKQQAADQAHARFKDPESDFLAYVNLWRYLEEQARQALSANAFRKACRKEYLNYLRVREWQDLYRQLEQV 613 (1320)
T ss_pred C--CCCCCCHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 7--88888867640304664214888525888999877789998865223278888788622755402588899999999
Q ss_pred HHHHHHHCC
Q ss_conf 999987438
Q gi|254780916|r 365 LLRAVIGLK 373 (482)
Q Consensus 365 i~r~~i~~~ 373 (482)
|+.+-+..+
T Consensus 614 v~~Lg~~~n 622 (1320)
T TIGR01967 614 VKELGLKVN 622 (1320)
T ss_pred HHHCCCCCC
T ss_conf 988086003
No 438
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=88.97 E-value=0.19 Score=29.94 Aligned_cols=223 Identities=15% Similarity=0.216 Sum_probs=103.0
Q ss_pred CCEEEECCCHHHHHHHHHHH-HHCCCEEEEE--CCHH-------------------HHHHHCCCCCEEEEECCCCCCCHH
Q ss_conf 83899869989999999999-9889889998--9379-------------------999860899899997854698889
Q gi|254780916|r 11 KRVLIIDKDDEQIKIIKDHV-ESYGYDVFIV--NVSD-------------------LSTISKIQVNVIFLSLINCEDDKE 68 (482)
Q Consensus 11 ~rILIVDDd~~~~~~l~~~L-~~~G~~v~~a--~~~a-------------------l~~l~~~~~dlillD~~mP~~dGl 68 (482)
.++.|+=-||.....|..+= .-.|+.|... ..+. ++-++....|+..+-.-||..+
T Consensus 23 ~~~~~~v~~p~d~~Al~e~rn~~~G~~~~l~~~~~~~~~~~~~~~Y~~~~~~a~~~v~e~e~e~~d~~~l~~d~P~~~-- 100 (495)
T TIGR02533 23 DTLVVLVSDPLDLAALDEVRNRLFGAAVELIIATASEIDDAINSVYARSSSSAAQIVEELEGEDDDLIALELDEPKIE-- 100 (495)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHCCCCCHHH--
T ss_conf 879999747889657999986433852000016847899999987416627899999874122012686406582257--
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCHH-HHHHHHHCCCCCCCCCCCCCCCCCC-----CCCCCC------------------
Q ss_conf 9999999857898399992689999-9998885057432222222222222-----222222------------------
Q gi|254780916|r 69 NILKNIVDKIPIVPIIVQTTQDNIK-ILNCFLYNRISKFFLNLVSRKQLCD-----SIICAL------------------ 124 (482)
Q Consensus 69 ell~~i~~~~p~ipvIiiT~~~~~~-~~~~a~~~g~~d~l~KP~~~~~L~~-----~i~~al------------------ 124 (482)
.+.+..-+-|||=| ++ ...+|++.+|.|-=.-||...-.+. .+..++
T Consensus 101 ----~L~~~~DdAPvIrl-----vN~~L~~Av~e~ASDIHIEPfE~~L~VRfRvDGvL~~V~~Ppk~l~~alvSRvKiMA 171 (495)
T TIGR02533 101 ----DLLDLEDDAPVIRL-----VNSLLSRAVKERASDIHIEPFEKELVVRFRVDGVLRDVLSPPKKLQAALVSRVKIMA 171 (495)
T ss_pred ----HCCCCCCCCCHHHH-----HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEECCCCCCHHHHCCCCCEEEECC
T ss_conf ----31377987848999-----999999999744885453651216353663061662343787677424300356606
Q ss_pred ----CCCCCCCCCCCCCCCC---------------------------------CCCCCCCCCCCCCCCCCCCC-CCCEEE
Q ss_conf ----2222222222111111---------------------------------11222222222222222234-432048
Q gi|254780916|r 125 ----REGVVPSQENEHCALD---------------------------------SLIAVSPAMIQVVDLARKAG-DCAIPI 166 (482)
Q Consensus 125 ----~~~~~~~~~~~~~~~~---------------------------------~LiG~S~~m~~v~~~i~~~a-~~~~~v 166 (482)
.++++++--+-..... .=+|-|+ +..+..+++- .+.-=|
T Consensus 172 ~LnIAEKRLPQDGRI~Lrv~Gr~~DiRVSt~Pt~fGERvVMRLLDK~~~~l~L~~LGm~~---~~l~~~~~li~rpHGIi 248 (495)
T TIGR02533 172 KLNIAEKRLPQDGRISLRVAGRDIDIRVSTVPTSFGERVVMRLLDKDAVRLDLEALGMSP---ELLSSLERLIKRPHGII 248 (495)
T ss_pred CCCHHHCCCCCCCCEEEEECCEEEEEEEEECCCCCCCEEEHHHHCHHHHHHHHHHCCCCH---HHHHHHHHHHHCCCCEE
T ss_conf 777232178998726666737446678853058997100000112047777588648888---89999999971889618
Q ss_pred EEECCCCCHHHHH-HHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC-CCC-------CCCCEE
Q ss_conf 8732777436799-9999842675433210123465542100243311255553221110012-344-------667147
Q gi|254780916|r 167 MIQGEFGVGKKRL-SRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGK-FIE-------ANGGTI 237 (482)
Q Consensus 167 li~Ge~GtGK~~~-A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~-~~~-------a~~Gtl 237 (482)
|.+|+||+||++. =-++-.. +-.....++| +|-+|-.+=|-. ....+.++|+ |.+ =+--.+
T Consensus 249 LVTGPTGSGKtTTLYaaL~~L-N~~~~NIlTv------EDPVEY~i~GIg---Q~Qvn~kIglTFA~GLRaILRQDPDii 318 (495)
T TIGR02533 249 LVTGPTGSGKTTTLYAALSRL-NTPERNILTV------EDPVEYQIEGIG---QIQVNPKIGLTFAAGLRAILRQDPDII 318 (495)
T ss_pred EECCCCCCCHHHHHHHHHHHH-CCCCCCEEEE------ECCEEEEECCCC---EEEECCCCCHHHHHHHHHHHCCCCCEE
T ss_conf 841778985258899999863-5899715686------578247624876---365146543038888788642799889
Q ss_pred EECCCCHH---HHHHHHHHHHHH
Q ss_conf 51664200---188999888877
Q gi|254780916|r 238 VLEEPDAL---PLAVQGRIYNFI 257 (482)
Q Consensus 238 ~l~ei~~L---~~~~Q~~Ll~~l 257 (482)
=.=||=|+ -..+|+.|--.|
T Consensus 319 MvGEIRD~ETA~IAiQASLTGHL 341 (495)
T TIGR02533 319 MVGEIRDLETAQIAIQASLTGHL 341 (495)
T ss_pred EEECCCCHHHHHHHHHHHHHHHH
T ss_conf 98231606899999987643257
No 439
>PRK06217 hypothetical protein; Validated
Probab=88.95 E-value=0.38 Score=27.73 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=24.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 04887327774367999999842675433210123
Q gi|254780916|r 164 IPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVN 198 (482)
Q Consensus 164 ~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~ 198 (482)
..|+|.|-+|+||+++|+.+-.. -+-|++.+|
T Consensus 2 ~rI~i~G~sGsGkSTla~~La~~---l~~~~~~lD 33 (185)
T PRK06217 2 MRIHITGASGSGTTTLGAALAEA---LDLPHLDTD 33 (185)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH---HCCCEEECC
T ss_conf 67999789988789999999997---598968645
No 440
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=88.94 E-value=0.29 Score=28.59 Aligned_cols=35 Identities=11% Similarity=0.222 Sum_probs=25.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 48873277743679999998426754332101234
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNC 199 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c 199 (482)
-|.|+|=+|+||+++|+++...-.....+.+.+|.
T Consensus 4 viW~TGLsGsGKTTlA~~l~~~L~~~~~~~~~LDG 38 (157)
T pfam01583 4 TVWFTGLSGSGKSTIANALERKLFAQGISVYVLDG 38 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 99988989999999999999999975997799768
No 441
>KOG0990 consensus
Probab=88.90 E-value=1.1 Score=24.57 Aligned_cols=122 Identities=18% Similarity=0.193 Sum_probs=62.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHH----HHHHHHHCCCCC-CCCCCCCCCCC---CCCCCCHH
Q ss_conf 11111222222222222222234432048873277743679----999998426754-33210123465---54210024
Q gi|254780916|r 138 ALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKR----LSRFIHESGKRA-FFPFFIVNCGM---IDQDKIEK 209 (482)
Q Consensus 138 ~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~----~A~~iH~~s~r~-~~~fi~v~c~~---~~~~~~e~ 209 (482)
....++++++.+..+.+.+.-. .--+.|..|++||||.. +|+-+. |+.. ..-....|.++ ++..-...
T Consensus 39 ~l~dv~~~~ei~st~~~~~~~~--~lPh~L~YgPPGtGktsti~a~a~~ly--~~~~~~~m~lelnaSd~rgid~vr~qi 114 (360)
T KOG0990 39 FLGIVIKQEPIWSTENRYSGMP--GLPHLLFYGPPGTGKTSTILANARDFY--SPHPTTSMLLELNASDDRGIDPVRQQI 114 (360)
T ss_pred HHHHHHCCCCHHHHHHHHCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHC--CCCCCHHHHHHHHCCCCCCCCCHHHHH
T ss_conf 2566733772124788862688--897534348998899873666566505--899824699986436766886147888
Q ss_pred HHHCCCCCCCCCCCCCCCCCCC-CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC
Q ss_conf 3311255553221110012344-667147516642001889998888776420011235532123431565214
Q gi|254780916|r 210 FLFGDVDLQTKNSAQFLGKFIE-ANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTE 282 (482)
Q Consensus 210 ~lFG~~~~~~~~~~~~~g~~~~-a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~ 282 (482)
.+|-... ..-.|.. +.---+.|||-+.|....|..|-|+++. .+.++|++..++
T Consensus 115 ~~fast~--------~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek-----------~t~n~rF~ii~n 169 (360)
T KOG0990 115 HLFASTQ--------QPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEK-----------YTANTRFATISN 169 (360)
T ss_pred HHHHHHC--------CCEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH-----------HCCCEEEEEECC
T ss_conf 9877641--------640002467615887334137669899999999987-----------133237998616
No 442
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=88.88 E-value=0.43 Score=27.35 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=20.8
Q ss_pred EEEECCCCCHHHHHHHHH-HHCCCCCCCCCCCC
Q ss_conf 887327774367999999-84267543321012
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFI-HESGKRAFFPFFIV 197 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~i-H~~s~r~~~~fi~v 197 (482)
|||.|++|+||+....++ +.......+..+++
T Consensus 4 iLitG~TGSGKTTtl~all~~i~~~~~~~IiTi 36 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTI 36 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 999899999799999999985363788369996
No 443
>PRK13764 ATPase; Provisional
Probab=88.87 E-value=0.22 Score=29.41 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=29.1
Q ss_pred CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 222234432048873277743679999998426754
Q gi|254780916|r 155 LARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRA 190 (482)
Q Consensus 155 ~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~ 190 (482)
..+++.....-|||.|.+|+||+++|.+|-.+-...
T Consensus 251 l~~Rl~~~a~GilIaG~PGaGKsTfaqalA~~~~~~ 286 (605)
T PRK13764 251 LKERLEERAEGILIAGAPGAGKSTFAQALAEFYADM 286 (605)
T ss_pred HHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 999887336649997799997789999999999847
No 444
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=88.77 E-value=0.26 Score=28.89 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=18.6
Q ss_pred EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 8732777436799999984267
Q gi|254780916|r 167 MIQGEFGVGKKRLSRFIHESGK 188 (482)
Q Consensus 167 li~Ge~GtGK~~~A~~iH~~s~ 188 (482)
=+.||+|+||.++|++|.....
T Consensus 37 GLVGESGSGKSLiAK~Ic~v~k 58 (330)
T COG4170 37 GLVGESGSGKSLIAKAICGVNK 58 (330)
T ss_pred EEECCCCCCHHHHHHHHHCCCC
T ss_conf 3344688864289999861131
No 445
>KOG0161 consensus
Probab=88.70 E-value=0.24 Score=29.15 Aligned_cols=215 Identities=16% Similarity=0.155 Sum_probs=93.3
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHH------HHHHCC--CCCEEEEECC-CCCCCHHHHHHHHH
Q ss_conf 64352883899869989999999999988988999893799------998608--9989999785-46988899999999
Q gi|254780916|r 5 KSLDRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSDL------STISKI--QVNVIFLSLI-NCEDDKENILKNIV 75 (482)
Q Consensus 5 ~~m~~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~al------~~l~~~--~~dlillD~~-mP~~dGlell~~i~ 75 (482)
..-+..++|+|-|.+..+...--.-=...|+.|.+.....+ ....-+ .|| -+=|+- |-..|--.++-.++
T Consensus 25 ~~~d~kk~vWvpd~~e~fv~~~i~~~~~~~v~v~~~~~~~~~~v~~~~v~~~NPPkfd-k~eDMa~LT~lNeasVL~nL~ 103 (1930)
T KOG0161 25 RPFDSKKWVWVPDPKEGFVKAEIKSEEGEKVTVETEEGGTLTQVKEDDVQKMNPPKFD-KVEDMAELTFLNEASVLHNLK 103 (1930)
T ss_pred CCHHHCCEEEECCCCCCEEEEEEECCCCCCEEEEECCCCEEEEECHHHCCCCCCCCCC-CCCCHHHHCCCCHHHHHHHHH
T ss_conf 6644345345238877723345412578735999768861687339973757998730-020177750367399886478
Q ss_pred HHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf 85789839999268999999988850574322222222222-222222222222222222111111112222-2222222
Q gi|254780916|r 76 DKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQL-CDSIICALREGVVPSQENEHCALDSLIAVS-PAMIQVV 153 (482)
Q Consensus 76 ~~~p~ipvIiiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L-~~~i~~al~~~~~~~~~~~~~~~~~LiG~S-~~m~~v~ 153 (482)
.++-.. .+.| +.|++=-...|+-.--+ -..|.+..+.. ..+...+.|..-+ .+.+.+.
T Consensus 104 ~RY~~~--lIyT------------YSGLFcVviNPyk~lpiYt~~v~~~ykgk------rr~e~pPHIfavad~AYr~mL 163 (1930)
T KOG0161 104 QRYASD--LIYT------------YSGLFCVVINPYKRLPIYTESVVRMYKGK------KREEMPPHIFAVADEAYRNML 163 (1930)
T ss_pred HHHHHC--HHHH------------CCCCEEEEECCCCCCCCCCHHHHHHHCCC------CCCCCCCHHHHHHHHHHHHHH
T ss_conf 999846--6887------------33550577658767887888999885566------635699368999899999998
Q ss_pred CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC-----CCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 222223443204887327774367999999842-675433210123465542-----10024331125555322111001
Q gi|254780916|r 154 DLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES-GKRAFFPFFIVNCGMIDQ-----DKIEKFLFGDVDLQTKNSAQFLG 227 (482)
Q Consensus 154 ~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~-s~r~~~~fi~v~c~~~~~-----~~~e~~lFG~~~~~~~~~~~~~g 227 (482)
.. .-+.++||+||+|.||+.-.+-+=.+ -.-+...-...+-....+ .+.--+.||..+-.-.+.+.|-|
T Consensus 164 ~~-----renQSiLiTGESGAGKTeNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFg 238 (1930)
T KOG0161 164 QD-----RENQSILITGESGAGKTENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFG 238 (1930)
T ss_pred HC-----CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHCCHHHHCCCCCCCCC
T ss_conf 46-----7876276526887786433899999999860102457777687699999808508774574654088976651
Q ss_pred CCCC---CCCCEEEECCCCHH
Q ss_conf 2344---66714751664200
Q gi|254780916|r 228 KFIE---ANGGTIVLEEPDAL 245 (482)
Q Consensus 228 ~~~~---a~~Gtl~l~ei~~L 245 (482)
+|.. -.+|.+.-..|+.+
T Consensus 239 kfirI~F~~~G~i~~a~Ie~y 259 (1930)
T KOG0161 239 KFIRIHFDATGKIAGADIETY 259 (1930)
T ss_pred EEEEEECCCCCCCCHHHHHHH
T ss_conf 358886189873102047888
No 446
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=88.64 E-value=0.45 Score=27.19 Aligned_cols=22 Identities=36% Similarity=0.353 Sum_probs=19.3
Q ss_pred EEEECCCCCHHHHHHHHHHHCC
Q ss_conf 8873277743679999998426
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIHESG 187 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH~~s 187 (482)
|.|.|.+|+||+++|+.|...-
T Consensus 2 IgI~G~sgsGKTT~a~~L~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8988999885999999999980
No 447
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=88.62 E-value=0.28 Score=28.70 Aligned_cols=43 Identities=9% Similarity=0.119 Sum_probs=25.3
Q ss_pred HHHHCCCCCEEEEECCCCCCCH------HHHHHHHHHHCCCCCEEEEECC
Q ss_conf 9986089989999785469888------9999999985789839999268
Q gi|254780916|r 46 STISKIQVNVIFLSLINCEDDK------ENILKNIVDKIPIVPIIVQTTQ 89 (482)
Q Consensus 46 ~~l~~~~~dlillD~~mP~~dG------lell~~i~~~~p~ipvIiiT~~ 89 (482)
++.-..+|+++++|----..|- +++++.+++. -.+.+|++|-.
T Consensus 166 AmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e-~g~a~l~ITHD 214 (539)
T COG1123 166 AMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE-LGMAVLFITHD 214 (539)
T ss_pred HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCC
T ss_conf 99983799989977985410899999999999999997-09489998689
No 448
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.60 E-value=0.35 Score=28.01 Aligned_cols=33 Identities=24% Similarity=0.176 Sum_probs=23.4
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 222222234432048873277743679999998
Q gi|254780916|r 152 VVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIH 184 (482)
Q Consensus 152 v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH 184 (482)
+.+.+.--.....-+-|.||+|+||+++.|.|-
T Consensus 20 al~~vsl~i~~Ge~~~ivG~SGsGKSTllr~i~ 52 (233)
T cd03258 20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCIN 52 (233)
T ss_pred EEECCEEEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 984828899999999998898058999999996
No 449
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=88.58 E-value=0.36 Score=27.86 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 204887327774367999999842
Q gi|254780916|r 163 AIPIMIQGEFGVGKKRLSRFIHES 186 (482)
Q Consensus 163 ~~~vli~Ge~GtGK~~~A~~iH~~ 186 (482)
..-+-|.||+|+||++++|+|-..
T Consensus 350 GE~l~lvG~sGsGKSTl~r~l~gl 373 (623)
T PRK10261 350 GETLSLVGESGSGKSTTGRALLRL 373 (623)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 958999767876689999998566
No 450
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=88.56 E-value=1.2 Score=24.31 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 22222223443204887327774367999999
Q gi|254780916|r 152 VVDLARKAGDCAIPIMIQGEFGVGKKRLSRFI 183 (482)
Q Consensus 152 v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~i 183 (482)
+.+.+.--.....-|-|.|++|+||+++=..|
T Consensus 20 ~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred ECCCCEEEECCCCEEEEECCCCCCHHHHHHHH
T ss_conf 52462588749989999899999899999999
No 451
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=88.52 E-value=2 Score=22.66 Aligned_cols=98 Identities=12% Similarity=0.167 Sum_probs=59.8
Q ss_pred CCCEEEE--CCC--HHHHHHHHHHHHHCCCEEEEECC----HH-HHHHHCCCCCEEEEECCCCC-CCHH-HHHHHHHHHC
Q ss_conf 8838998--699--89999999999988988999893----79-99986089989999785469-8889-9999999857
Q gi|254780916|r 10 HKRVLII--DKD--DEQIKIIKDHVESYGYDVFIVNV----SD-LSTISKIQVNVIFLSLINCE-DDKE-NILKNIVDKI 78 (482)
Q Consensus 10 ~~rILIV--DDd--~~~~~~l~~~L~~~G~~v~~a~~----~a-l~~l~~~~~dlillD~~mP~-~dGl-ell~~i~~~~ 78 (482)
..+|++. ..| ..=..++..+|+..||+|.--+. +. .+.+.+.+||+|-+...|+. +..+ ++++.+++..
T Consensus 82 ~g~vv~~tv~Gd~H~lG~~mv~~~l~~~G~~V~~LG~~vp~e~~v~~~~~~~~divglS~~~~~~~~~~~~~i~~lr~~~ 161 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAG 161 (201)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 86599962798773899999999998789779977899997999999997298999996256688999999999999728
Q ss_pred --CCCCEEEEECCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf --89839999268999999988850574322222
Q gi|254780916|r 79 --PIVPIIVQTTQDNIKILNCFLYNRISKFFLNL 110 (482)
Q Consensus 79 --p~ipvIiiT~~~~~~~~~~a~~~g~~d~l~KP 110 (482)
+++||++=-+--+.+. +-..|++.|-..+
T Consensus 162 ~~~~v~i~vGG~a~~~~~---a~~~GAD~~a~da 192 (201)
T cd02070 162 LRDKVKVMVGGAPVNQEF---ADEIGADGYAEDA 192 (201)
T ss_pred CCCCCEEEEECCCCCHHH---HHHHCCCEECCCH
T ss_conf 988985999880179999---9992988784799
No 452
>KOG2227 consensus
Probab=88.51 E-value=0.19 Score=29.87 Aligned_cols=205 Identities=19% Similarity=0.210 Sum_probs=105.1
Q ss_pred CCCCCCCCCCCCCCCCCCCC--CCCCEEEEEECCCCCHHHHHHH-HHHHCCCCCCCCC-CCCCCCCCCCC-CCHHHHHCC
Q ss_conf 11122222222222222223--4432048873277743679999-9984267543321-01234655421-002433112
Q gi|254780916|r 140 DSLIAVSPAMIQVVDLARKA--GDCAIPIMIQGEFGVGKKRLSR-FIHESGKRAFFPF-FIVNCGMIDQD-KIEKFLFGD 214 (482)
Q Consensus 140 ~~LiG~S~~m~~v~~~i~~~--a~~~~~vli~Ge~GtGK~~~A~-~iH~~s~r~~~~f-i~v~c~~~~~~-~~e~~lFG~ 214 (482)
..+.|.-..|..++..+..- +++...+.+.|.+||||..+-. .+-..+.-..+|- +.+||.++... -+=..+|+.
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~ 229 (529)
T KOG2227 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSS 229 (529)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 77652588899999999854312667645751799865488999998740343166516998512354258899999888
Q ss_pred C---CCCCCCCCCCCCCCCC----C-CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE---CCC
Q ss_conf 5---5553221110012344----6-671475166420018899988887764200112355321234315652---143
Q gi|254780916|r 215 V---DLQTKNSAQFLGKFIE----A-NGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFL---TEK 283 (482)
Q Consensus 215 ~---~~~~~~~~~~~g~~~~----a-~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~---t~~ 283 (482)
. ....+...+..-.|++ . .-=.++|||++.|--..|.-|..+.+=- ...+.|+|-. -+.
T Consensus 230 ~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp----------~lp~sr~iLiGiANsl 299 (529)
T KOG2227 230 LLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWP----------KLPNSRIILIGIANSL 299 (529)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCEEEEEHHCC----------CCCCCEEEEEEEHHHH
T ss_conf 988742895047899999998752563389872125677604653143210013----------6776605666400135
Q ss_pred CCCCCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CCC
Q ss_conf 321111112333799988654------334467787744222255667776410112233332111110001223--389
Q gi|254780916|r 284 NLLPQVKSHVFRKDLYYRISV------FLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKY--PWI 355 (482)
Q Consensus 284 ~L~~~~~~g~fr~dLy~rL~~------~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y--~WP 355 (482)
||.+ +| +-||+. -.+..||-- ++||..++..=+.... ...|-+.|+++...- .-.
T Consensus 300 DlTd-----R~----LprL~~~~~~~P~~l~F~PYT--k~qI~~Il~~rl~~~~------t~~~~~~Aie~~ArKvaa~S 362 (529)
T KOG2227 300 DLTD-----RF----LPRLNLDLTIKPKLLVFPPYT--KDQIVEILQQRLSEES------TSIFLNAAIELCARKVAAPS 362 (529)
T ss_pred HHHH-----HH----HHHHHHCCCCCCCEEEECCCC--HHHHHHHHHHHHHCCC------CCCCCHHHHHHHHHHHCCCC
T ss_conf 5777-----77----666540257887466556878--8999999999974054------43330389999999862576
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 8689999999999874
Q gi|254780916|r 356 DNVQELKNILLRAVIG 371 (482)
Q Consensus 356 GNvREL~n~i~r~~i~ 371 (482)
|.+|.+=.++++++-.
T Consensus 363 GDlRkaLdv~R~aiEI 378 (529)
T KOG2227 363 GDLRKALDVCRRAIEI 378 (529)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 1289999999878899
No 453
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=88.50 E-value=0.33 Score=28.14 Aligned_cols=33 Identities=21% Similarity=0.159 Sum_probs=21.1
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 887327774367999999842675433210123
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVN 198 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~ 198 (482)
|||.|++|+||+.++.-+-......+..-+.+.
T Consensus 2 ~li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~ 34 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 899989999899999999999876399799998
No 454
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.40 E-value=0.38 Score=27.75 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=19.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 432048873277743679999998
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIH 184 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH 184 (482)
....-+-|.|++|+||+++.|.|-
T Consensus 48 ~~GE~~~ivG~SGsGKSTLLr~i~ 71 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCIN 71 (269)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 899999999899848999999997
No 455
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=88.38 E-value=0.31 Score=28.39 Aligned_cols=30 Identities=13% Similarity=0.295 Sum_probs=22.1
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 432048873277743679999998426754
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRA 190 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~ 190 (482)
+-..-+=|||-+|+||+++|.|+.+.=...
T Consensus 17 h~g~vlWlTGLSGsGKsTiA~Al~~~L~~~ 46 (187)
T TIGR00455 17 HRGVVLWLTGLSGSGKSTIANALEKKLEKK 46 (187)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 973898511688563579999999999966
No 456
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=88.38 E-value=2 Score=22.60 Aligned_cols=145 Identities=14% Similarity=0.112 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 34467787744222255667776410112233332111110001223389868999999999987438981068895454
Q gi|254780916|r 306 LINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDSHLTEDRFVLL 385 (482)
Q Consensus 306 ~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~~~~i~~~~~~~~ 385 (482)
.+..+|+.++ +++.++... +.+.|. .++++|++.|.. .-+||.+++.|-++.+...+.++.|+.+++...
T Consensus 134 ~~~~~~~~~~--~l~~~i~~~----~~~~~l---~i~~~a~~~L~~-~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~ 203 (334)
T COG1466 134 VVECKPLDEA--ELPQWIKKR----AKELGL---KIDQEAIQLLLE-ALGGNLLAIAQEIEKLALYAGDKEITLEDVEEV 203 (334)
T ss_pred EEEECCCCHH--HHHHHHHHH----HHHCCC---CCCHHHHHHHHH-HCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 4662588778--899999999----999189---889999999999-858829999999999987478986679999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 21244543223432222223344432100000000112344454325899-99999999999998287278999784899
Q gi|254780916|r 386 LSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRL-SDIEKEIIGLAMKLYRAQMSEVARRLGIG 464 (482)
Q Consensus 386 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~e~E~~~I~~aL~~~~Gn~~~aA~~LGIs 464 (482)
.............+.... ......-.....+.....+ .-.....+ .++-.-++...+...+.+..++++.||+.
T Consensus 204 v~~~~~~~~f~l~dail~--g~~~~a~~~l~~L~~~ge~---p~~il~~l~~~f~~~~~l~~~~~~g~~~~~~~~~l~~~ 278 (334)
T COG1466 204 VSDVAEFNIFDLADALLK--GDVKKALRLLRDLLLEGEE---PLKLLAALTRQFRLLLQLKALAEKGKSLQQAAKSLGIP 278 (334)
T ss_pred HCCCCCCCHHHHHHHHHC--CCHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCC
T ss_conf 736455788999999987--8989999999999976998---89999999999999999999997364699999882892
Q ss_pred H
Q ss_conf 8
Q gi|254780916|r 465 R 465 (482)
Q Consensus 465 R 465 (482)
.
T Consensus 279 ~ 279 (334)
T COG1466 279 Y 279 (334)
T ss_pred H
T ss_conf 8
No 457
>PRK00889 adenylylsulfate kinase; Provisional
Probab=88.37 E-value=0.33 Score=28.20 Aligned_cols=36 Identities=19% Similarity=0.382 Sum_probs=25.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 204887327774367999999842675433210123
Q gi|254780916|r 163 AIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVN 198 (482)
Q Consensus 163 ~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~ 198 (482)
..-+.++|-+|+||+++|+.++..=.....+.+.+|
T Consensus 4 g~viWltGlsgSGKTTia~~l~~~L~~~~~~~~~LD 39 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTISHALAEKLRARGYPVEVLD 39 (175)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 889998898999999999999999998699679977
No 458
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=88.35 E-value=2 Score=22.59 Aligned_cols=119 Identities=14% Similarity=0.211 Sum_probs=56.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCC---CCCCCCCCCCCEEEE
Q ss_conf 488732777436799999984267543--321012346554210024331125555322111---001234466714751
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIHESGKRAF--FPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQ---FLGKFIEANGGTIVL 239 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH~~s~r~~--~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~---~~g~~~~a~~Gtl~l 239 (482)
+|++.|..|+||+.+-+.+-....+.. .|=+-+|...+....+.-.++- .+ |...- ..-.+..|++-.+++
T Consensus 1 ~Il~lGl~~sGKTtil~~l~~~~~~~~~~~pT~G~~~~~~~~~~~~~~iwD-~~---G~~~~r~lw~~y~~~~~~iI~Vv 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFD-MS---GQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCEEEEEEE-CC---CCCCCCHHHHHHHCCCCEEEEEE
T ss_conf 999999999988999999972898756416850757899983998899998-58---87442055898705674489997
Q ss_pred CCCCHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 6642001889998-888776420011235532123431565214332111111233
Q gi|254780916|r 240 EEPDALPLAVQGR-IYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVF 294 (482)
Q Consensus 240 ~ei~~L~~~~Q~~-Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~f 294 (482)
|--+.-..+.-.. |-.+++...+. .+..+ =+|.+...|+...+....+
T Consensus 77 Dssd~~~~~~~~~~l~~ll~~~~~~----~~~~P---iLI~~NK~D~~~~~~~~ei 125 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIK----HRRVP---ILFFANKMDLPDALTAVKI 125 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHCHHHC----CCCCE---EEEEEECCCCCCCCCHHHH
T ss_conf 0763888999999999997176551----79845---9999814778899999999
No 459
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=88.33 E-value=2 Score=22.58 Aligned_cols=162 Identities=10% Similarity=0.098 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHCCCEEEE------ECCHH-----HHHHHCCCCCEEEEECCCCCCCH------HHHHHHHHHHCCCCC
Q ss_conf 89999999999988988999------89379-----99986089989999785469888------999999998578983
Q gi|254780916|r 20 DEQIKIIKDHVESYGYDVFI------VNVSD-----LSTISKIQVNVIFLSLINCEDDK------ENILKNIVDKIPIVP 82 (482)
Q Consensus 20 ~~~~~~l~~~L~~~G~~v~~------a~~~a-----l~~l~~~~~dlillD~~mP~~dG------lell~~i~~~~p~ip 82 (482)
.....-...+++..|++... -+.+. ++..-...|+++++|--.-..|- +++++.+++. .+.
T Consensus 109 ~~~~~~~~~~l~~~~~~~~~~~~~~~LSgG~~Qrv~ia~al~~~p~ililDEPt~~LD~~~~~~l~~~l~~l~~~--g~t 186 (491)
T PRK10982 109 DKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER--GCG 186 (491)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCE
T ss_conf 999999999999769984325604558999999999999985399889815873455878889998888887742--853
Q ss_pred EEEEECCCCHHHHH-----HHHHCCCC--CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC---CCCCCCCC-CCCCCC
Q ss_conf 99992689999999-----88850574--3222222222222222-2222222222222211---11111122-222222
Q gi|254780916|r 83 IIVQTTQDNIKILN-----CFLYNRIS--KFFLNLVSRKQLCDSI-ICALREGVVPSQENEH---CALDSLIA-VSPAMI 150 (482)
Q Consensus 83 vIiiT~~~~~~~~~-----~a~~~g~~--d~l~KP~~~~~L~~~i-~~al~~~~~~~~~~~~---~~~~~LiG-~S~~m~ 150 (482)
||++| |+-.+... ..+++|-. ..-.+....+.+.... .+.+............ .....+.. ..++++
T Consensus 187 il~it-H~l~~v~~~~Drv~vm~~G~iv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~ 265 (491)
T PRK10982 187 IVYIS-HKMEEIFQLCDEITILRDGQWIATEPLAGLTMDQIIAMMVGRSLTQRFPDKENKPGEVILEVRNLTSLRQPSIR 265 (491)
T ss_pred EEEEC-CCHHHHHHCCCEEEECCCCEEEEECCHHHCCHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEECCCCCCCCCEE
T ss_conf 67862-43674421586789756974985466111899999976506222431786457987617999523237887420
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 22222222344320488732777436799999984267
Q gi|254780916|r 151 QVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGK 188 (482)
Q Consensus 151 ~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~ 188 (482)
. +.--.....-|-|.|++|+||+.+++.|-..-.
T Consensus 266 ~----vsf~v~~GEivgl~G~nGsGKsTL~~~l~Gl~~ 299 (491)
T PRK10982 266 D----VSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE 299 (491)
T ss_pred E----EEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 2----679996896899778999978899999819867
No 460
>KOG1942 consensus
Probab=88.32 E-value=0.42 Score=27.41 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=40.8
Q ss_pred CCCCCCCCCCCCCCC---CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 111111122222222---2222222234432048873277743679999998426754332101234
Q gi|254780916|r 136 HCALDSLIAVSPAMI---QVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNC 199 (482)
Q Consensus 136 ~~~~~~LiG~S~~m~---~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c 199 (482)
.....+++|+-++-. -+.+.|+.---+...|||-|++||||+.+|-+|-+.-. ..-||..+-.
T Consensus 34 ~~~~~g~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlAlaisqELG-~kvPFcpmvg 99 (456)
T KOG1942 34 VEVAAGFVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALALAISQELG-PKVPFCPMVG 99 (456)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC-CCCCCCCCCC
T ss_conf 11244511526666551089999986632672799736998765689999999747-9998566641
No 461
>KOG1802 consensus
Probab=88.29 E-value=0.23 Score=29.26 Aligned_cols=60 Identities=18% Similarity=0.285 Sum_probs=35.5
Q ss_pred CCCCCCCCCCCCCCCCCCEEE-EEECCCCCHHHHH-HHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 222222222222234432048-8732777436799-99998426754332101234655421002433
Q gi|254780916|r 146 SPAMIQVVDLARKAGDCAIPI-MIQGEFGVGKKRL-SRFIHESGKRAFFPFFIVNCGMIDQDKIEKFL 211 (482)
Q Consensus 146 S~~m~~v~~~i~~~a~~~~~v-li~Ge~GtGK~~~-A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~l 211 (482)
+..+..|.+.+. .|+ ||+|++||||+.. |..+++...+..+|...+.-+.+.-+.+...+
T Consensus 413 ~SQ~~AV~~VL~------rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802 413 ASQSNAVKHVLQ------RPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred HHHHHHHHHHHC------CCCEEEECCCCCCCEEHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
T ss_conf 678999999975------98515546999883311689999999852895699816500289999999
No 462
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=88.25 E-value=0.29 Score=28.56 Aligned_cols=43 Identities=14% Similarity=0.291 Sum_probs=34.1
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 2222222222234432048873277743679999998426754
Q gi|254780916|r 148 AMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRA 190 (482)
Q Consensus 148 ~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~ 190 (482)
+...+.+.+..+.+...+|-++||+|+||..+-.++...+.--
T Consensus 20 a~s~I~e~L~~~~~~~lnIavtGesG~GkSsfINalRg~g~e~ 62 (375)
T pfam05049 20 VVSIIKKAIQEISSAPLKIAVTGDSGNGKSSFINALRGIGHEE 62 (375)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 9999999997544382479985489986789999874789877
No 463
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=88.25 E-value=2.1 Score=22.54 Aligned_cols=87 Identities=14% Similarity=0.172 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHCCCEEEEECC----HH-HHHHHCCCCCEEEEECCC-CCCCHH-HHHHHHHHHCCCCCEEEEECCCCHH
Q ss_conf 9999999999988988999893----79-999860899899997854-698889-9999999857898399992689999
Q gi|254780916|r 21 EQIKIIKDHVESYGYDVFIVNV----SD-LSTISKIQVNVIFLSLIN-CEDDKE-NILKNIVDKIPIVPIIVQTTQDNIK 93 (482)
Q Consensus 21 ~~~~~l~~~L~~~G~~v~~a~~----~a-l~~l~~~~~dlillD~~m-P~~dGl-ell~~i~~~~p~ipvIiiT~~~~~~ 93 (482)
.-..++..+|+..||+|.--+. +. ++.+.+.+||+|-+.-.| .-|... ++++.+++..+.+||++=-+--+.+
T Consensus 103 iGkniv~~~l~~~Gf~V~dLG~dv~~e~~v~~~~~~~~divglSallTtTm~~mk~vi~~l~~~g~~vkv~vGGa~vt~~ 182 (213)
T cd02069 103 IGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGGAATSRK 182 (213)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHH
T ss_conf 21899999999789668850589989999999997499999983230304999999999999749981799716327888
Q ss_pred HHH---HHHHCCCCCCC
Q ss_conf 999---88850574322
Q gi|254780916|r 94 ILN---CFLYNRISKFF 107 (482)
Q Consensus 94 ~~~---~a~~~g~~d~l 107 (482)
.+. ..-+.|+..|-
T Consensus 183 fa~~~~~~~y~Gad~y~ 199 (213)
T cd02069 183 HTAVKIAPEYDGPVVYV 199 (213)
T ss_pred HHHHHHHHCCCCCCEEE
T ss_conf 99876410367980784
No 464
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=88.24 E-value=0.39 Score=27.64 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=21.2
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 43204887327774367999999842
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHES 186 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~ 186 (482)
....-+=|.||+|+||++++++|-..
T Consensus 40 ~~GEilgivGeSGsGKSTl~~~i~gl 65 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGL 65 (330)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89989999868987799999999768
No 465
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=88.22 E-value=2.1 Score=22.53 Aligned_cols=27 Identities=30% Similarity=0.254 Sum_probs=21.3
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 320488732777436799999984267
Q gi|254780916|r 162 CAIPIMIQGEFGVGKKRLSRFIHESGK 188 (482)
Q Consensus 162 ~~~~vli~Ge~GtGK~~~A~~iH~~s~ 188 (482)
...-+=|.|++|+||+.+++.|...-+
T Consensus 309 ~GEi~gi~G~nGsGKsTL~k~l~Gl~~ 335 (520)
T TIGR03269 309 EGEIFGIVGTSGAGKTTLSKIIAGVLE 335 (520)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 896899987888878999999948878
No 466
>PRK06696 uridine kinase; Validated
Probab=88.21 E-value=0.26 Score=28.86 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=38.1
Q ss_pred CCCCCCCCCCCCCCCCCC-CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 222222222222223443-204887327774367999999842675433210123465
Q gi|254780916|r 145 VSPAMIQVVDLARKAGDC-AIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGM 201 (482)
Q Consensus 145 ~S~~m~~v~~~i~~~a~~-~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~ 201 (482)
.+..|.++-+.|..+... ..-|-|-|.+|+||+++|+.|-+.-...+.|.+.+.+-.
T Consensus 7 r~~~~~~~~~~i~~~~p~rpl~VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v~~Dd 64 (227)
T PRK06696 7 RKQVVKEIANHILTLNLTRPLRVAIDGITASGKTTFANELAEEIKKRGRPVIRASIDD 64 (227)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 8789999999998359998689997789987879999999999974699489971544
No 467
>PRK05480 uridine kinase; Provisional
Probab=88.17 E-value=0.51 Score=26.83 Aligned_cols=23 Identities=35% Similarity=0.316 Sum_probs=19.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 48873277743679999998426
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIHESG 187 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH~~s 187 (482)
=|.|.|.+|+||+++|+.|...-
T Consensus 8 iIgIaG~SgSGKTT~a~~L~~~l 30 (209)
T PRK05480 8 IIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 99998999778999999999980
No 468
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=88.15 E-value=0.38 Score=27.74 Aligned_cols=80 Identities=14% Similarity=0.204 Sum_probs=36.4
Q ss_pred EEEEECCCCCHHHHHHHHHHH-C--CC-CCCCCCCCCCCCCCCCCCCHHHHHC----CCCCCCCCCCCCCCCCCC--CCC
Q ss_conf 488732777436799999984-2--67-5433210123465542100243311----255553221110012344--667
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIHE-S--GK-RAFFPFFIVNCGMIDQDKIEKFLFG----DVDLQTKNSAQFLGKFIE--ANG 234 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH~-~--s~-r~~~~fi~v~c~~~~~~~~e~~lFG----~~~~~~~~~~~~~g~~~~--a~~ 234 (482)
-++|+|.+||||+++|=.+-. . +. ....-|+..|-+-+ +.+...|=+ ..+.........+..+.. -+-
T Consensus 3 v~~V~G~pGtGKTvv~l~l~~~l~~~~~~~~~~~l~~N~~~~--~~l~~~l~~~~~~~~~~~~~~~~~fi~~~~~~~~~~ 80 (348)
T pfam09848 3 VFLVTGGPGTGKTVVALNLFAELSDSDLGRTAVFLSGNHPLV--LVLYEALAGDLKVRKKKLFRKPTSFINNLHKAPPHE 80 (348)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHH--HHHHHHHHHHCCHHHCCCCCCCHHHHCCCCCCCCCC
T ss_conf 999977799389999999999986440268208995786699--999999860412001020007252316523579867
Q ss_pred CEEEECCCCHHH
Q ss_conf 147516642001
Q gi|254780916|r 235 GTIVLEEPDALP 246 (482)
Q Consensus 235 Gtl~l~ei~~L~ 246 (482)
..+++||=+.|-
T Consensus 81 dvvivDEAhRl~ 92 (348)
T pfam09848 81 DVVIVDEAHRLW 92 (348)
T ss_pred CEEEEEHHHHHH
T ss_conf 789983178665
No 469
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=88.13 E-value=0.7 Score=25.85 Aligned_cols=43 Identities=16% Similarity=0.070 Sum_probs=31.5
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 2222222222222344320488732777436799999984267
Q gi|254780916|r 146 SPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGK 188 (482)
Q Consensus 146 S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~ 188 (482)
++.-+.+.+.+.--..-...|-|.|++|+||+++++.|-.+-+
T Consensus 359 ~~~~~~vL~~is~~i~~Ge~vaIVG~SGsGKSTl~~LL~g~~p 401 (588)
T PRK11174 359 SPDGKTLAGPLNFTLPAGQRVALVGPSGAGKTSLLNALLGFLP 401 (588)
T ss_pred CCCCCEECCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7999851036469974997899989998649999999987289
No 470
>pfam05225 HTH_psq helix-turn-helix, Psq domain. This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster. In pipsqueak this domain binds to GAGA sequence.
Probab=88.09 E-value=0.74 Score=25.70 Aligned_cols=32 Identities=34% Similarity=0.624 Sum_probs=24.0
Q ss_pred HHHHHHHH-CC--CHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999982-87--2789997848998899999998
Q gi|254780916|r 443 IGLAMKLY-RA--QMSEVARRLGIGRSTLYRKIRE 474 (482)
Q Consensus 443 I~~aL~~~-~G--n~~~aA~~LGIsR~tL~rKlk~ 474 (482)
+..||+.. +| .+.+||+.-||+++|||++++.
T Consensus 5 l~~Al~av~~g~~S~~kAa~~ygIP~sTL~~r~~g 39 (45)
T pfam05225 5 LAEALEAVRNGKMSLRKAARKYGIPRSTLWRRLRG 39 (45)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 99999999919967999999978985899999756
No 471
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=88.05 E-value=0.64 Score=26.15 Aligned_cols=179 Identities=17% Similarity=0.115 Sum_probs=84.8
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCC-CCCCCCCCEEEECCCCH
Q ss_conf 88732777436799999984267543321012346554210024331125555322111001-23446671475166420
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLG-KFIEANGGTIVLEEPDA 244 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g-~~~~a~~Gtl~l~ei~~ 244 (482)
+=|.|.+|+||+.+=|.|=-.-. .+.-=|.+|-..+.+. .++-+.....++.| -|++| +||= +
T Consensus 26 tAlFG~SGsGKTtli~~iaGL~r-p~~G~i~l~G~~L~ds--------~k~i~Lp~ekRr~GYVFQeA---~LFP----H 89 (361)
T TIGR02142 26 TALFGRSGSGKTTLIRLIAGLTR-PDEGEIVLNGEVLFDS--------RKGIFLPPEKRRIGYVFQEA---RLFP----H 89 (361)
T ss_pred EEEECCCCCHHHHHHHHHHHCCC-CCCCEEEECCEEEECC--------CCCCCCCCCCCEEEEEEECC---EECC----C
T ss_conf 87125899707899999873167-5668799887462056--------77667872011353688535---5078----5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC-------------CCCCCCCCHHHH---HHHHHHHHHHHHHH
Q ss_conf 01889998888776420011235532123431565214-------------332111111233---37999886543344
Q gi|254780916|r 245 LPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTE-------------KNLLPQVKSHVF---RKDLYYRISVFLIN 308 (482)
Q Consensus 245 L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~-------------~~L~~~~~~g~f---r~dLy~rL~~~~i~ 308 (482)
+.+...|. =|.-+--++.+. -.+-+||.-=+ .-=.+.|+=|+= .++|. |--= -
T Consensus 90 --l~Vr~NL~----YG~~~~~~~~r~-i~~~~v~~lLgi~hLL~R~p~~LSGGEkQRVAIGRALLs~P~LL--LMDE--P 158 (361)
T TIGR02142 90 --LSVRGNLR----YGMKRARPKERR-ISFERVIELLGIEHLLERLPGRLSGGEKQRVAIGRALLSSPRLL--LMDE--P 158 (361)
T ss_pred --HHHHHHHH----CCCCCCCHHHCC-CCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHH--HCCC--C
T ss_conf --23345512----572105741213-78899998746751121678875784047788998874187411--1046--6
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC
Q ss_conf 6778-774422225566777641011223333211111000122338986899999999998743898106889545421
Q gi|254780916|r 309 ISTL-RSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDSHLTEDRFVLLLS 387 (482)
Q Consensus 309 iPpL-ReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~~~~i~~~~~~~~l~ 387 (482)
+-+| ..||.+|.+- |++...+++.|.. +.+|+ +.|...+..|.+++-+|.+-....+.....
T Consensus 159 LaaLD~~rk~EilPY----LerL~~e~~iP~l---------yVSHs----l~Ev~rLADrvvvl~~GrV~a~G~~~~v~~ 221 (361)
T TIGR02142 159 LAALDEPRKKEILPY----LERLHAELKIPIL---------YVSHS----LDEVARLADRVVVLEDGRVEAAGPLEEVWS 221 (361)
T ss_pred HHHCCHHHHHHHCCH----HHHHHHHHCCCEE---------EEECC----HHHHHHHHCEEEEEECCEECCCCCHHHHHC
T ss_conf 234064446641616----7678987279889---------99049----799987607478743570103686799953
Q ss_pred C
Q ss_conf 2
Q gi|254780916|r 388 R 388 (482)
Q Consensus 388 ~ 388 (482)
.
T Consensus 222 ~ 222 (361)
T TIGR02142 222 S 222 (361)
T ss_pred C
T ss_conf 6
No 472
>COG3311 AlpA Predicted transcriptional regulator [Transcription]
Probab=88.03 E-value=0.4 Score=27.56 Aligned_cols=23 Identities=43% Similarity=0.723 Sum_probs=20.1
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 27899978489988999999981
Q gi|254780916|r 453 QMSEVARRLGIGRSTLYRKIREY 475 (482)
Q Consensus 453 n~~~aA~~LGIsR~tL~rKlk~~ 475 (482)
+..++++.+|+||+|+||+|++-
T Consensus 15 rl~ev~~~~GlSrstiYr~i~~~ 37 (70)
T COG3311 15 RLPEVAQLTGLSRSTIYRLIKDG 37 (70)
T ss_pred HHHHHHHHHCCCHHHHHHHHCCC
T ss_conf 08999999776689999998047
No 473
>KOG3928 consensus
Probab=87.99 E-value=0.42 Score=27.45 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=26.3
Q ss_pred CEEEEEECCCCCHHH-HHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 204887327774367-9999998426754332101234
Q gi|254780916|r 163 AIPIMIQGEFGVGKK-RLSRFIHESGKRAFFPFFIVNC 199 (482)
Q Consensus 163 ~~~vli~Ge~GtGK~-~~A~~iH~~s~r~~~~fi~v~c 199 (482)
..-.+|.||.||||+ .+|+++|..- +.-|+.++.
T Consensus 179 ~~r~vL~Ge~GtGKSiaL~qa~h~a~---~~~wlIlhi 213 (461)
T KOG3928 179 VKRFVLDGEPGTGKSIALAQAVHYAA---DQKWLILHI 213 (461)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH---CCCEEEEEC
T ss_conf 35899857998762059999999873---178599977
No 474
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=87.96 E-value=0.44 Score=27.30 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=20.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 488732777436799999984267
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIHESGK 188 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH~~s~ 188 (482)
=|.|.|.+|+||+++|+.|+..=.
T Consensus 10 iIgIaG~SgSGKTTv~~~l~~~~~ 33 (218)
T COG0572 10 IIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999867987788999999999828
No 475
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=87.92 E-value=2.2 Score=22.40 Aligned_cols=58 Identities=10% Similarity=0.260 Sum_probs=38.8
Q ss_pred HCCCEEEEEC---CH----H-HHHHHCCCCCEEEEECCCCC-CCH-------HHHHHHHHHHCCCCCEEEEECC
Q ss_conf 8898899989---37----9-99986089989999785469-888-------9999999985789839999268
Q gi|254780916|r 32 SYGYDVFIVN---VS----D-LSTISKIQVNVIFLSLINCE-DDK-------ENILKNIVDKIPIVPIIVQTTQ 89 (482)
Q Consensus 32 ~~G~~v~~a~---~~----a-l~~l~~~~~dlillD~~mP~-~dG-------lell~~i~~~~p~ipvIiiT~~ 89 (482)
..|++|.-.+ ++ + .+.+.+.++|++++|+.--. .+. ..+++.+|+.+|+.|+++++..
T Consensus 29 ~lg~~viNlG~sG~g~le~~~a~~i~~~~a~~~vi~~g~N~~~~~~~~~~~~~~~V~~ir~~~p~tPIvlv~~~ 102 (177)
T cd01844 29 RLGLEVINLGFSGNARLEPEVAELLRDVPADLYIIDCGPNIVGAEAMVRERLGPLVKGLRETHPDTPILLVSPR 102 (177)
T ss_pred HCCCCEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 54997771466754310288999986189988999634678874789999999999999987889978998336
No 476
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=87.86 E-value=0.49 Score=26.93 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=36.1
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 43204887327774367999999842675433210123465542100243311255553221110012344667147
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTI 237 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl 237 (482)
-...-|||+|++|.||+.+|-.+-..+ ..||.=|.-.+.. ....|+|.. ...-.|++|--.-|.+
T Consensus 12 i~g~GvLi~G~SG~GKS~lal~Li~rG----h~LVaDD~v~i~~--~~~~l~g~~------p~~~~~~~EvRg~Gii 76 (149)
T cd01918 12 VGGIGVLITGPSGIGKSELALELIKRG----HRLVADDRVVVKR--EGGRLVGRA------PEALKGLIEIRGLGII 76 (149)
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHCC----CEEEECCEEEEEE--ECCEEEEEC------CHHHCCCEEECCCCEE
T ss_conf 999899998789999899999999819----9787278799999--799999978------8476581467377389
No 477
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=87.86 E-value=0.49 Score=26.95 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=18.8
Q ss_pred EEEECCCCCHHHHHHHHHHHCC
Q ss_conf 8873277743679999998426
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIHESG 187 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH~~s 187 (482)
|-|.|.+|+||+++|+.|-..=
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l 23 (196)
T pfam00485 2 IGVAGSSGAGKTTVARTFVSIF 23 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998998571999999999996
No 478
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=87.84 E-value=0.37 Score=27.83 Aligned_cols=41 Identities=27% Similarity=0.415 Sum_probs=26.9
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 8873277743679999998426754332101234655421002433
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFL 211 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~l 211 (482)
|-|+|=+|+||+++|+.+...-.....+-+. ++.+.+-+.|
T Consensus 2 iW~tGLsgsGKTTlA~~l~~~L~~~~~~~~~-----lDGD~iR~~l 42 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYV-----LDGDNVRHGL 42 (149)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEE-----ECCHHHHHHH
T ss_conf 8987999999999999999999986997599-----7748899773
No 479
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=87.82 E-value=0.46 Score=27.16 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=22.2
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 8873277743679999998426754332101
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIHESGKRAFFPFFI 196 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~ 196 (482)
|++.|-+||||+++|+.+.+. -+.+|+.
T Consensus 2 iiv~GvsGsGKSTia~~La~~---lg~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER---LGAPFID 29 (150)
T ss_pred EEEECCCCCCHHHHHHHHHHH---HCCCEEC
T ss_conf 899918999999999999997---1995641
No 480
>PRK00131 aroK shikimate kinase; Reviewed
Probab=87.79 E-value=0.52 Score=26.79 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=26.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 204887327774367999999842675433210123
Q gi|254780916|r 163 AIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVN 198 (482)
Q Consensus 163 ~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~ 198 (482)
..+|.+.|-+|+||+++++.+-+. -+-||+-+|
T Consensus 4 ~~nI~liG~~GsGKTtvgk~LA~~---L~~~fiD~D 36 (175)
T PRK00131 4 GPNIVLIGMMGAGKSTIGRLLAKR---LGYEFIDTD 36 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH---HCCCCCCCC
T ss_conf 980898889999989999999999---596902398
No 481
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.70 E-value=0.45 Score=27.23 Aligned_cols=27 Identities=26% Similarity=0.213 Sum_probs=21.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 432048873277743679999998426
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHESG 187 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~s 187 (482)
....-+-|.|++|+||+++++.|-..-
T Consensus 31 ~~Ge~~aiiG~sGsGKSTL~~~l~Gl~ 57 (277)
T PRK13642 31 TKGEWVSIIGQNGSGKSTTARLIDGLF 57 (277)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899899999999968999999996389
No 482
>pfam01527 Transposase_8 Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.
Probab=87.67 E-value=1.6 Score=23.33 Aligned_cols=38 Identities=26% Similarity=0.482 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 999999999999828727899978489988999999981
Q gi|254780916|r 437 DIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREY 475 (482)
Q Consensus 437 e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~~ 475 (482)
|+-..++..+++ .+..++..|+.+||+.+|||+=.++|
T Consensus 10 efK~~~V~~~~~-~g~sv~~var~~gi~~~~l~~W~k~~ 47 (75)
T pfam01527 10 EFKARAVKESLE-PGASVSELAREHGVSPATLYKWRKKY 47 (75)
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999999980-99849999999895999999999998
No 483
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.66 E-value=0.45 Score=27.20 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=21.4
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 43204887327774367999999842
Q gi|254780916|r 161 DCAIPIMIQGEFGVGKKRLSRFIHES 186 (482)
Q Consensus 161 ~~~~~vli~Ge~GtGK~~~A~~iH~~ 186 (482)
....-|-|.|++|+||+++++.|-..
T Consensus 28 ~~GE~vaivG~nGsGKSTL~~~l~Gl 53 (276)
T PRK13650 28 KQGEWLSIIGHNGSGKSTTVRLIDGL 53 (276)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89989999999998799999999738
No 484
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.66 E-value=0.45 Score=27.22 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=23.7
Q ss_pred CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 222223443204887327774367999999842
Q gi|254780916|r 154 DLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES 186 (482)
Q Consensus 154 ~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~ 186 (482)
+.+.--.....-|-|.|++|+||+++++.|-..
T Consensus 24 ~~isl~i~~GE~vaivG~nGsGKSTL~k~l~Gl 56 (279)
T PRK13635 24 KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL 56 (279)
T ss_pred EEEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 630768879989999999996599999999728
No 485
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD; InterPro: IPR014138 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are related families..
Probab=87.55 E-value=0.35 Score=27.99 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=17.1
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 48873277743679999998
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIH 184 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH 184 (482)
=+=|.||+|+||++.|.++=
T Consensus 14 ~~aLvG~SGSGKS~tc~A~L 33 (239)
T TIGR02770 14 VLALVGESGSGKSLTCLAIL 33 (239)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 78887487875899999985
No 486
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=87.52 E-value=0.53 Score=26.74 Aligned_cols=38 Identities=21% Similarity=0.154 Sum_probs=28.2
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 22222222344320488732777436799999984267
Q gi|254780916|r 151 QVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGK 188 (482)
Q Consensus 151 ~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~ 188 (482)
.+.+.+.--......|-|.|++|+||++++|.+-....
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred CHHHCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 41215027767998899987999988999999836788
No 487
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=87.51 E-value=0.58 Score=26.43 Aligned_cols=35 Identities=14% Similarity=0.007 Sum_probs=25.6
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 22222223443204887327774367999999842
Q gi|254780916|r 152 VVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES 186 (482)
Q Consensus 152 v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~ 186 (482)
+.+-+.--.....-+-|.|++|+||+++++.|-..
T Consensus 18 vL~~Isl~v~~Ge~~aiiG~SGsGKStl~k~llgl 52 (254)
T PRK10418 18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred EEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 88660728989999999999987899999999579
No 488
>TIGR02653 Lon_rel_chp conserved hypothetical protein; InterPro: IPR013473 This entry describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to IPR008269 from INTERPRO, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of Escherichia coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST]..
Probab=87.42 E-value=0.29 Score=28.61 Aligned_cols=141 Identities=15% Similarity=0.170 Sum_probs=80.9
Q ss_pred CCCCCCCC---CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 22222234---4320488732777436799999984267543321012-3465542100243311255553221110012
Q gi|254780916|r 153 VDLARKAG---DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIV-NCGMIDQDKIEKFLFGDVDLQTKNSAQFLGK 228 (482)
Q Consensus 153 ~~~i~~~a---~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v-~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~ 228 (482)
++.+.|+. -.+=+|.=.|+.||||.++=+-+ .|.-.+ ..+.-+-. .| |..=.++++|+
T Consensus 205 wh~l~RliPlvEnNYNlcELGPrgTGKShvYkE~--------SPn~iL~sGGqTTVA----NL------FyN~str~~GL 266 (677)
T TIGR02653 205 WHLLTRLIPLVENNYNLCELGPRGTGKSHVYKEL--------SPNSILMSGGQTTVA----NL------FYNMSTRQIGL 266 (677)
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCCCCCEEEECC--------CCCEEEECCCCHHHH----HH------HHHHHCCCCCE
T ss_conf 9999754323005755476478898734054135--------842122058843567----76------66542163020
Q ss_pred CCCCCCCEEEECCCCHHH---HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHH--------HHH
Q ss_conf 344667147516642001---889998888776420011235532123431565214332111111233--------379
Q gi|254780916|r 229 FIEANGGTIVLEEPDALP---LAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVF--------RKD 297 (482)
Q Consensus 229 ~~~a~~Gtl~l~ei~~L~---~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~f--------r~d 297 (482)
.-..+ .+=+|||..+. .+.=+-+=..+++|.|.|=-.+..-....=++-=+|+..+.||+..++ |.|
T Consensus 267 VG~WD--vVAFDEVAgi~fkdKdgv~imKdYmaSGSFARGkes~~g~ASivfvGN~NQ~vEtlvKtSHLf~PfP~a~~~D 344 (677)
T TIGR02653 267 VGLWD--VVAFDEVAGIEFKDKDGVQIMKDYMASGSFARGKESIEGKASIVFVGNINQSVETLVKTSHLFAPFPEAMRED 344 (677)
T ss_pred EEEEE--EEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf 33001--2531000487204863103433542047853453463553348998577861578887765304406887410
Q ss_pred --HHHHHHHHH--HHHHHHH
Q ss_conf --998865433--4467787
Q gi|254780916|r 298 --LYYRISVFL--INISTLR 313 (482)
Q Consensus 298 --Ly~rL~~~~--i~iPpLR 313 (482)
+|+|+...- =+||=+|
T Consensus 345 tAFfDR~H~YiPGWEIPKmR 364 (677)
T TIGR02653 345 TAFFDRIHYYIPGWEIPKMR 364 (677)
T ss_pred HHHHHHHHCCCCCCCCCCCC
T ss_conf 25675563058887688876
No 489
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=87.36 E-value=2.2 Score=22.40 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=51.3
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECC--CCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8998699899999999999889889998937--999986089989999785--46988899999999857898399992
Q gi|254780916|r 13 VLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLI--NCEDDKENILKNIVDKIPIVPIIVQT 87 (482)
Q Consensus 13 ILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~--mP~~dGlell~~i~~~~p~ipvIiiT 87 (482)
|||||-...+-..+.+.|+..|.++...... .++.+.+..||.|++.=- -|...|. .+..++.....+||.=+-
T Consensus 2 ILlIDn~DsFT~ni~~~l~~~g~~~~v~~~d~~~~~~i~~~~pd~IiLSpGPg~p~~~~~-~~~~~~~~~~~iPILGIC 79 (195)
T PRK07649 2 ILMIDNYDSFTYNLVQYLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGI-SMEVIRYFAGKIPIFGVC 79 (195)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEECCCCCCHHHCCC-CHHHHHHHCCCCCEEEEC
T ss_conf 999958980799999999978997999889968999998419898998899999578476-146799752899784302
No 490
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=87.33 E-value=0.38 Score=27.75 Aligned_cols=93 Identities=11% Similarity=0.133 Sum_probs=45.3
Q ss_pred EEEECCCCCHHHHHHHHHHHCCC-----CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 88732777436799999984267-----5433210123465542100243311255553221110012344667147516
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIHESGK-----RAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLE 240 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH~~s~-----r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ 240 (482)
|.|.|++|+||+.+|+.+-..-. -....+...++. ++ +.. |. .+...+++|
T Consensus 1 i~l~G~~G~GKS~~a~~la~~~~~~~~~~~~~~~Y~~~~~--------~~-------~wd------gY---~gq~vvi~D 56 (105)
T pfam00910 1 IWLYGPPGCGKSTLAKYLARALLDHLGLPKKDSVYSRNPD--------DD-------FWD------GY---TGQPVVIID 56 (105)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCC--------CC-------CCC------CC---CCCEEEEEE
T ss_conf 9897999898899999999999998377878977967887--------76-------567------88---998579996
Q ss_pred CCCHHHHHH--HHHHHHHHHHHHCCCCCCC---CCCCCCCE-EEEECC
Q ss_conf 642001889--9988887764200112355---32123431-565214
Q gi|254780916|r 241 EPDALPLAV--QGRIYNFIETGKIEFFDSR---GAIRLDVR-LIFLTE 282 (482)
Q Consensus 241 ei~~L~~~~--Q~~Ll~~l~~~~~~~~g~~---~~~~~~~R-iIa~t~ 282 (482)
++...+... =..+.+++..-.|.+.... +....+-+ ||++||
T Consensus 57 D~~~~~~~~~~~~~~~~lvs~~p~~~~ma~le~Kg~~f~s~~vi~tsN 104 (105)
T pfam00910 57 DFGQNPDGPSDEAELIRLVSSTPYPPPMAALEEKGTPFTSKFVIVTSN 104 (105)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECC
T ss_conf 577788862889999987569983888667614888446888999479
No 491
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=87.29 E-value=0.44 Score=27.27 Aligned_cols=20 Identities=35% Similarity=0.624 Sum_probs=18.2
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 48873277743679999998
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIH 184 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH 184 (482)
-+.|+|-+||||+++|+.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 37993799986687999999
No 492
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=87.26 E-value=1.3 Score=23.92 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=30.2
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999857898399992689999999888505743222222
Q gi|254780916|r 68 ENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLV 111 (482)
Q Consensus 68 lell~~i~~~~p~ipvIiiT~~~~~~~~~~a~~~g~~d~l~KP~ 111 (482)
+.++..+.++.|..+||++|-.-.+..--.|...-|.||..+-+
T Consensus 107 L~~~~~L~~~~~~~~VvLVSKDi~~RvkA~a~Gl~AeDY~~dr~ 150 (436)
T COG1875 107 LAVVLNLQEEEPGRRVVLVSKDINLRVKASALGLAAEDYENDRV 150 (436)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCEEEHHHCCCCHHHHHHHHH
T ss_conf 99999998508897279997776613355542862887656666
No 493
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.25 E-value=0.59 Score=26.40 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=25.9
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 222222234432048873277743679999998
Q gi|254780916|r 152 VVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIH 184 (482)
Q Consensus 152 v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH 184 (482)
+.+.+.--......|-|.|++|+||+++.+.|-
T Consensus 16 iL~~isl~i~~Ge~v~ivG~sGsGKSTLl~ll~ 48 (236)
T cd03253 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLF 48 (236)
T ss_pred EEECEEEEECCCCEEEEECCCCCCHHHHHHHHC
T ss_conf 330568998699999999999998999999974
No 494
>pfam00126 HTH_1 Bacterial regulatory helix-turn-helix protein, lysR family.
Probab=87.21 E-value=0.69 Score=25.92 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=25.5
Q ss_pred HHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 99982872789997848998899999998188
Q gi|254780916|r 446 AMKLYRAQMSEVARRLGIGRSTLYRKIREYNI 477 (482)
Q Consensus 446 aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~~gi 477 (482)
++.++ ||.++||+.|||+++++.+.|+++.-
T Consensus 9 ~v~~~-gs~~~AA~~l~isqs~vs~~i~~LE~ 39 (60)
T pfam00126 9 AVAEE-GSFTAAAERLGLSQPAVSRQIKRLEE 39 (60)
T ss_pred HHHHC-CCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99980-99999999979898899999999999
No 495
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=87.18 E-value=0.66 Score=26.04 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=18.5
Q ss_pred EEEEECCCCCHHHH-HHHHHHHCCCC---CCCCCCCCCC
Q ss_conf 48873277743679-99999842675---4332101234
Q gi|254780916|r 165 PIMIQGEFGVGKKR-LSRFIHESGKR---AFFPFFIVNC 199 (482)
Q Consensus 165 ~vli~Ge~GtGK~~-~A~~iH~~s~r---~~~~fi~v~c 199 (482)
-|++.|++|+||++ +|+.--.+..+ ..=-||++|+
T Consensus 196 vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~Dt 234 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDT 234 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 799977888757889999999999973899679998077
No 496
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=87.13 E-value=0.48 Score=27.03 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.2
Q ss_pred EEEECCCCCHHHHHHHHHHHC
Q ss_conf 887327774367999999842
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFIHES 186 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~iH~~ 186 (482)
|-|.|.+|+||+++|+.|-+.
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~ 22 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 899898977899999999999
No 497
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=87.13 E-value=0.55 Score=26.61 Aligned_cols=39 Identities=21% Similarity=0.066 Sum_probs=30.4
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 222222222344320488732777436799999984267
Q gi|254780916|r 150 IQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGK 188 (482)
Q Consensus 150 ~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~ 188 (482)
..+.+-+.--..--..|-|.|.||+||++++..|--.=+
T Consensus 374 ~~vl~~V~L~l~~G~r~Ai~G~SG~GKsTLL~~L~G~l~ 412 (566)
T TIGR02868 374 PNVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLD 412 (566)
T ss_pred HHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 465427864113886089866887657899999984028
No 498
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=87.12 E-value=1.4 Score=23.82 Aligned_cols=11 Identities=27% Similarity=0.459 Sum_probs=4.5
Q ss_pred CCHHHHHHHHH
Q ss_conf 86899999999
Q gi|254780916|r 356 DNVQELKNILL 366 (482)
Q Consensus 356 GNvREL~n~i~ 366 (482)
.|..++.+.+.
T Consensus 115 ~~~~~~~~~~~ 125 (154)
T COG1522 115 RDLEELERFLG 125 (154)
T ss_pred CCHHHHHHHHH
T ss_conf 89999999999
No 499
>TIGR00954 3a01203 Peroxysomal long chain fatty acyl transporter; InterPro: IPR005283 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). The members of this family are integral membrane proteins and they are involved in the import of activated long-chain fatty acids from the cytosol to the peroxisomal matrix. ; GO: 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane.
Probab=87.09 E-value=0.54 Score=26.67 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=0.0
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 3443204887327774367999999
Q gi|254780916|r 159 AGDCAIPIMIQGEFGVGKKRLSRFI 183 (482)
Q Consensus 159 ~a~~~~~vli~Ge~GtGK~~~A~~i 183 (482)
+..+-.+|||+||.|+||.-+=|.|
T Consensus 552 lqGsG~~lLi~GPNGCGKSSLFRiL 576 (788)
T TIGR00954 552 LQGSGNHLLICGPNGCGKSSLFRIL 576 (788)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 2158876687688998647899998
No 500
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.06 E-value=0.49 Score=26.93 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=0.0
Q ss_pred EEEECCCCCHHHHHHHHH
Q ss_conf 887327774367999999
Q gi|254780916|r 166 IMIQGEFGVGKKRLSRFI 183 (482)
Q Consensus 166 vli~Ge~GtGK~~~A~~i 183 (482)
|.|.|++|+||+++.+.|
T Consensus 38 vaiiG~sGsGKSTLl~ll 55 (269)
T PRK13648 38 TSIVGHNGSGKSTIAKLM 55 (269)
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999999999799999999
Done!