HHsearch alignment for GI: 254780916 and conserved domain: pfam00004

>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.

Probab=98.42  E-value=7e-08  Score=75.35  Aligned_cols=96  Identities=19%  Similarity=0.238  Sum_probs=61.6

Q ss_pred             EEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC---CCCCEEEECCC
Q ss_conf             887327774367999999842675433210123465542100243311255553221110012344---66714751664
Q gi|254780916|r  166 IMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIE---ANGGTIVLEEP  242 (482)
Q Consensus       166 vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~---a~~Gtl~l~ei  242 (482)
T Consensus         1 iLl~GppGtGKT~~a~~la~~~---~~~~~~v~~~~~~~~~~-----g~~------~~~i~~~f~~a~~~~p~Il~iDe~   66 (131)
T pfam00004         1 LLLYGPPGTGKTTLAKAVAKEL---GAPFIEISGSELVSKYV-----GES------EKRLRELFEAAKKLAPCVIFIDEI   66 (131)
T ss_pred             CEEECCCCCCHHHHHHHHHHHH---CCCCEECCCCCCCCCCC-----CHH------HHHHHHHHHHHHHCCCCEEEECHH
T ss_conf             9878999999999999999997---89853324201222334-----506------888999999999749918983116


Q ss_pred             CHHHHH-----------HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC
Q ss_conf             200188-----------99988887764200112355321234315652143
Q gi|254780916|r  243 DALPLA-----------VQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEK  283 (482)
Q Consensus       243 ~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~  283 (482)
T Consensus        67 d~l~~~~~~~~~~~~~~~~~~ll~~ld~~--------~~~~~~v~~I~tTN~  110 (131)
T pfam00004        67 DALAGSRGSGGDSESRRVVNQLLTELDGF--------TSSLSKVIVIAATNR  110 (131)
T ss_pred             HHHHCCCCCCCCCCCHHHHHHHHHHHHHC--------CCCCCCEEEEEECCC
T ss_conf             77751678888875132687899998502--------246887699997599