HHsearch alignment for GI: 254780916 and conserved domain: pfam00308
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=98.66 E-value=4.2e-08 Score=76.89 Aligned_cols=202 Identities=17% Similarity=0.220 Sum_probs=116.5
Q ss_pred CCCCCCCC-CCCCCCCCCCCCCCCCCC----CCCEEEEEECCCCCHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCC
Q ss_conf 11111111-222222222222222234----4320488732777436799999984267--5433210123465542100
Q gi|254780916|r 135 EHCALDSL-IAVSPAMIQVVDLARKAG----DCAIPIMIQGEFGVGKKRLSRFIHESGK--RAFFPFFIVNCGMIDQDKI 207 (482)
Q Consensus 135 ~~~~~~~L-iG~S~~m~~v~~~i~~~a----~~~~~vli~Ge~GtGK~~~A~~iH~~s~--r~~~~fi~v~c~~~~~~~~ 207 (482)
T Consensus 3 ~~~TFdnF~vg~~N--~~a~~~~~~i~~~~~~~~npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~~~~~~~ 80 (219)
T pfam00308 3 KRYTFENFVIGSSN--RFAHAAALAVAEAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEEFLNDFV 80 (219)
T ss_pred CCCCCCCCCCCCCH--HHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHH
T ss_conf 99871020236838--9999999999967587678269988999988899999999999849998288843999999889
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHH--HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 2433112555532211100123446671475166420018--89998888776420011235532123431565214332
Q gi|254780916|r 208 EKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPL--AVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNL 285 (482)
Q Consensus 208 e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~--~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L 285 (482)
T Consensus 81 ~-~l~---~---~~~~~f~~~l~~~--d~l~iDDi~~l~~~~~~ee~lf~l~N~~~----------~~~~~lllts~~~p 141 (219)
T pfam00308 81 D-ALR---D---NKIEAFKKSYRNV--DLLLIDDIQFLAGKEKTQEEFFHTFNALH----------ENNKQIVLTSDRPP 141 (219)
T ss_pred H-HHH---C---CCHHHHHHHHHHC--CHHHHCCHHHHCCCHHHHHHHHHHHHHHH----------HCCCEEEEECCCCC
T ss_conf 9-998---1---8888999997632--33652236765686478999999999999----------72986999779981
Q ss_pred CCCCCHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 1111112333799988654-3--344677877442222556677764101122333321111100012233898689999
Q gi|254780916|r 286 LPQVKSHVFRKDLYYRISV-F--LINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELK 362 (482)
Q Consensus 286 ~~~~~~g~fr~dLy~rL~~-~--~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~ 362 (482)
T Consensus 142 ~~l~---~~~~dL~SRL~~g~~~~i~~pdd~~~~--------~iL~~~a~~r~l---~l~~~v~~yl~~r-~~R~~r~L~ 206 (219)
T pfam00308 142 KELE---GFEDRLRSRFEWGLIIAIEPPDLETRL--------AILRKKAEEENI---NIPNEVLNFIAQR-ITDNVRELE 206 (219)
T ss_pred CCCC---CCCHHHHHHHHCCEEEECCCCCHHHHH--------HHHHHHHHHCCC---CCCHHHHHHHHHH-CCCCHHHHH
T ss_conf 0024---532779999868756611699999999--------999999998499---9999999999984-279899999
Q ss_pred HHHHHHHHHC
Q ss_conf 9999998743
Q gi|254780916|r 363 NILLRAVIGL 372 (482)
Q Consensus 363 n~i~r~~i~~ 372 (482)
T Consensus 207 ~~L~~L~~~~ 216 (219)
T pfam00308 207 GALNRLLAFA 216 (219)
T ss_pred HHHHHHHHHH
T ss_conf 9999999855