HHsearch alignment for GI: 254780916 and conserved domain: pfam02954
>pfam02954 HTH_8 Bacterial regulatory protein, Fis family.
Probab=99.00 E-value=5.3e-10 Score=90.31 Aligned_cols=42 Identities=45% Similarity=0.720 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 999999999999999828727899978489988999999981
Q gi|254780916|r 434 RLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREY 475 (482)
Q Consensus 434 ~l~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~~ 475 (482)
T Consensus 1 tl~~~Er~~I~~aL~~~~gn~~~aA~~LGisr~tL~~kmkky 42 (42)
T pfam02954 1 SLEEVEKELIEAALERTGGNKSKAARLLGISRRTLYRKLKKY 42 (42)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 989999999999999949979999999796999999999739