HHsearch alignment for GI: 254780916 and conserved domain: pfam02954

>pfam02954 HTH_8 Bacterial regulatory protein, Fis family.
Probab=99.00  E-value=5.3e-10  Score=90.31  Aligned_cols=42  Identities=45%  Similarity=0.720  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             999999999999999828727899978489988999999981
Q gi|254780916|r  434 RLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREY  475 (482)
Q Consensus       434 ~l~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR~tL~rKlk~~  475 (482)
T Consensus         1 tl~~~Er~~I~~aL~~~~gn~~~aA~~LGisr~tL~~kmkky   42 (42)
T pfam02954         1 SLEEVEKELIEAALERTGGNKSKAARLLGISRRTLYRKLKKY   42 (42)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHC
T ss_conf             989999999999999949979999999796999999999739