HHsearch alignment for GI: 254780916 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.02 E-value=6.2e-10 Score=89.82 Aligned_cols=200 Identities=14% Similarity=0.162 Sum_probs=116.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC---CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 11111111222222222222222234---432048873277743679999998426754332101234655421002433
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAG---DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFL 211 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a---~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~l 211 (482)
T Consensus 19 RP~~l~e~vGQehl~~~l~~~i~a~~~~~~~l~h~lf~GPPG~GKTTlAriiAk~~~---~~~~~~s~~~i~~~------ 89 (234)
T pfam05496 19 RPRRLDEYIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG---VNIRITSGPALEKP------ 89 (234)
T ss_pred CCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHC---CCEEEECCHHHHHH------
T ss_conf 989766606949999999999998874277766278878999988899999998408---75376142666438------
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCC-EEEECCCCHHHHHHHHHHHHHHHHHHCCC-CCCCCC------CCCCCEEEEECCC
Q ss_conf 112555532211100123446671-47516642001889998888776420011-235532------1234315652143
Q gi|254780916|r 212 FGDVDLQTKNSAQFLGKFIEANGG-TIVLEEPDALPLAVQGRIYNFIETGKIEF-FDSRGA------IRLDVRLIFLTEK 283 (482)
Q Consensus 212 FG~~~~~~~~~~~~~g~~~~a~~G-tl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~-~g~~~~------~~~~~RiIa~t~~ 283 (482)
T Consensus 90 -----------~di~~~l~~~~~~~ILFIDEIHr~nK~qqd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P~FtLIgATTe 158 (234)
T pfam05496 90 -----------GDLAAILTNLEPGDVLFIDEIHRLNRAVEEILYPAMEDFRLDIVIGKGPSARSIRLDLPPFTLVGATTR 158 (234)
T ss_pred -----------HHHHHHHHHCCCCCEEEEECHHHCCHHHHHHCCCCCCCCEEEEEECCCCCCEEEECCCCCEEEEEECCC
T ss_conf -----------999999984589988999665435876887445533461699996367663246526897599852156
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 32111111233379998865433446778774422225566777641011223333211111000122338986899999
Q gi|254780916|r 284 NLLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKN 363 (482)
Q Consensus 284 ~L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n 363 (482)
T Consensus 159 ~~-------~l~~pl~sR~~i-~~~l~~l--~~edl~~il----~r~~~~l~---i~i~~eal~~IA~~s-~Gd~R~ALn 220 (234)
T pfam05496 159 AG-------LLTSPLRDRFGI-VLRLEFY--SVEELEEIV----KRSARILG---VEIDEEGAAEIARRS-RGTPRIANR 220 (234)
T ss_pred CC-------CCCHHHHHHHHH-EEECCCC--CHHHHHHHH----HHHHHHCC---CCCCHHHHHHHHHHC-CCCHHHHHH
T ss_conf 66-------477779976211-2442468--999999999----99999839---995999999999977-998999989
Q ss_pred HHHHHHHHC
Q ss_conf 999998743
Q gi|254780916|r 364 ILLRAVIGL 372 (482)
Q Consensus 364 ~i~r~~i~~ 372 (482)
T Consensus 221 lLe~v~d~a 229 (234)
T pfam05496 221 LLRRVRDFA 229 (234)
T ss_pred HHHHHHHHH
T ss_conf 999999999