HHsearch alignment for GI: 254780916 and conserved domain: pfam05729

>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.

Probab=95.76  E-value=0.029  Score=35.62  Aligned_cols=83  Identities=19%  Similarity=0.326  Sum_probs=41.2

Q ss_pred             EEEEECCCCCHHHHHHHHHH-HCCCC---CCCCC-CCCCCCCCCCC---CCHHHHHCCCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf             48873277743679999998-42675---43321-01234655421---0024331125555322111-00123446671
Q gi|254780916|r  165 PIMIQGEFGVGKKRLSRFIH-ESGKR---AFFPF-FIVNCGMIDQD---KIEKFLFGDVDLQTKNSAQ-FLGKFIEANGG  235 (482)
Q Consensus       165 ~vli~Ge~GtGK~~~A~~iH-~~s~r---~~~~f-i~v~c~~~~~~---~~e~~lFG~~~~~~~~~~~-~~g~~~~a~~G  235 (482)
T Consensus         2 ~i~i~G~aG~GKTtll~kl~~~wa~g~~~~~~~~vf~~~~r~~~~~~~~sl~~ll~~~~~~~~~~~~~~~~~~~~~~~k~   81 (165)
T pfam05729         2 TVILQGEAGSGKTTLLQKLALLWAQGKLPQDFDFVFFLPCRELSRSGEASLADLLFSQWPEPAAPVSEVWAVILELPERV   81 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCE
T ss_conf             89998279898999999999999869843697289999956707776689999999876774576378999998397728


Q ss_pred             EEEECCCCHHHH
Q ss_conf             475166420018
Q gi|254780916|r  236 TIVLEEPDALPL  247 (482)
Q Consensus       236 tl~l~ei~~L~~  247 (482)
T Consensus        82 L~ilDGlDE~~~   93 (165)
T pfam05729        82 LLILDGLDELAS   93 (165)
T ss_pred             EEEECCHHHHCC
T ss_conf             999648455144