HHsearch alignment for GI: 254780916 and conserved domain: pfam06068
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=95.81 E-value=0.0075 Score=39.77 Aligned_cols=98 Identities=21% Similarity=0.303 Sum_probs=61.1
Q ss_pred CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCC-----CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 671475166420018899988887764200112355321234315652143321-----111112333799988654334
Q gi|254780916|r 233 NGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLL-----PQVKSHVFRKDLYYRISVFLI 307 (482)
Q Consensus 233 ~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~-----~~~~~g~fr~dLy~rL~~~~i 307 (482)
T Consensus 275 vpGVLFIDEvHMLDiEcFsfLnralEs-~laP-----------ivI~ATNRG~~~IRGTd~~sPHGiP~DlLDRllII~- 341 (395)
T pfam06068 275 VPGVLFIDEVHMLDIECFSFLNRALES-ELAP-----------IVILATNRGICTIRGTDIISPHGIPLDLLDRLLIIT- 341 (395)
T ss_pred ECCCEEEECCHHCCHHHHHHHHHHHCC-CCCC-----------EEEEEECCCCEEECCCCCCCCCCCCHHHHHHEEEEE-
T ss_conf 427468850000005899888776505-6787-----------699984465203525677588899877773025885-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4677877442222556677764101122333321111100012233
Q gi|254780916|r 308 NISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYP 353 (482)
Q Consensus 308 ~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~ 353 (482)
T Consensus 342 ---T~py~~~ei~~I----i~iRa~~E~---v~l~~~al~~L~~ig 377 (395)
T pfam06068 342 ---TEPYTREEIKQI----LEIRAQEEG---VEISEEALDLLAKIG 377 (395)
T ss_pred ---CCCCCHHHHHHH----HHHHHHHHC---CCCCHHHHHHHHHHH
T ss_conf ---688998999999----998777607---877989999999865