HHsearch alignment for GI: 254780916 and conserved domain: pfam07724

>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.

Probab=99.48  E-value=6.9e-14  Score=117.76  Aligned_cols=127  Identities=13%  Similarity=0.047  Sum_probs=99.4

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC--CCCCCCCCCCEEEECC
Q ss_conf             04887327774367999999842675433210123465542100243311255553221110--0123446671475166
Q gi|254780916|r  164 IPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQF--LGKFIEANGGTIVLEE  241 (482)
Q Consensus       164 ~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~--~g~~~~a~~Gtl~l~e  241 (482)
T Consensus         4 ~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~~v~~~p~~VillDE   83 (168)
T pfam07724         4 GSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVLIDE   83 (168)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEHH
T ss_conf             79998898998999999999999679853448855756542569998705899872624265078999838984898657


Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf             4200188999888877642001123553212343156521433211111
Q gi|254780916|r  242 PDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVK  290 (482)
Q Consensus       242 i~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~  290 (482)
T Consensus        84 IeKa~~~V~~~LL~ild~g~~~d~~g~~v~~~n~i~i~Tsn~g~~~~~~  132 (168)
T pfam07724        84 IEKAHPGVQNDLLQILEGGTLTDKQGRKVDFRNTLFIMTGNFGSEKISD  132 (168)
T ss_pred             HHHHCHHHHHHHHHHCCCCCEECCCCCEEECCCEEEEECCCCCCHHHHH
T ss_conf             7665899999999870587063699967844647999768737299998