HHsearch alignment for GI: 254780916 and conserved domain: pfam07728
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.35 E-value=2.7e-12 Score=106.52 Aligned_cols=115 Identities=19% Similarity=0.265 Sum_probs=86.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC--CCCEEEECCC
Q ss_conf 48873277743679999998426754332101234655421002433112555532211100123446--6714751664
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEA--NGGTIVLEEP 242 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a--~~Gtl~l~ei 242 (482)
T Consensus 1 ~vll~Gp~G~GKT~la~~la~~l--~~~~~~~i~~~~---~~~~~dl~G~~~~~~~~~~~~~g~l~~a~~~g~vl~lDEi 75 (139)
T pfam07728 1 GVLLVGPPGTGKSELAERLAAAL--SNRPVFYVQLTR---DTTEEDLKGRRNIANGTTSWVDGPLVRAAREGEIAVLDEI 75 (139)
T ss_pred CEEEECCCCCHHHHHHHHHHHHC--CCCCCHHHCCCC---CCCHHHCCCCEECCCCCEEEECCHHHCCCCCCCEEEECCH
T ss_conf 98999899756999999999980--798311121465---5652220573423799357815514101012868996343
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCC-------CCCCEEEEECCCC
Q ss_conf 20018899988887764200112355321-------2343156521433
Q gi|254780916|r 243 DALPLAVQGRIYNFIETGKIEFFDSRGAI-------RLDVRLIFLTEKN 284 (482)
Q Consensus 243 ~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~-------~~~~RiIa~t~~~ 284 (482)
T Consensus 76 n~a~~~v~~~L~~~le~~~~~~~~~~~~~~~~~~~~~~~f~viaT~N~~ 124 (139)
T pfam07728 76 NRANPDVLNSLLSLLDERRLLLPEGGELVKVAPDDFAKRFRLIATMNPL 124 (139)
T ss_pred HHCCHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCEEEEEEECCC
T ss_conf 4489999999999974896983689727336666789996999975896