HHsearch alignment for GI: 254780916 and conserved domain: pfam08298
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.76 E-value=0.0012 Score=45.33 Aligned_cols=62 Identities=16% Similarity=0.285 Sum_probs=43.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC----CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 111111112222222222222222344----3204887327774367999999842675433210123
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGD----CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVN 198 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~----~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~ 198 (482)
T Consensus 53 rY~~F~dffGme~~i~~iV~~~ksAA~g~e~~kqIllL~GPVGsGKSsl~e~LK~glE~--y~~Y~i~ 118 (358)
T pfam08298 53 RYPAFADFFGMEETIERIVNYFRHAAQGLEERKQILYLLGPVGGGKSSLAERLKKLLEL--VPIYALK 118 (358)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC--CCEEEEC
T ss_conf 25542320015999999999999997236721058999778987758999999987205--8648844