BLAST/PSIBLAST alignment of GI: 254780916 and GI: 116253805 at iteration 1
>gi|116253805|ref|YP_769643.1| two-component response regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 494
>gi|115258453|emb|CAK09556.1| putative two-component response regulator with sigma 54 interacting domain transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 494
Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 171/493 (34%), Positives = 277/493 (56%), Gaps = 39/493 (7%)
Query: 22 QIKIIKDHVESYGYDVFIVNVSDLSTISKIQV-------NVIFLSLINCEDDKENILKNI 74
Q +++K+ +E +G+ +V+ ++ I V NVI L L+ E L +
Sbjct: 2 QRRLLKNAIERHGH---VVHQAENGRIGLEMVKRDSGLFNVIVLDLMMPEMTGLEFLDAL 58
Query: 75 VDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALR--EGVVPSQ 132
+ +P+IVQT Q I+ + + F + VS +++ SI A++ + V ++
Sbjct: 59 HEFGTQIPVIVQTGQGGIETVVQAMRAGAFDFVVKPVSPERIATSISNAMKLDQREVKAR 118
Query: 133 ENEHC-----ALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESG 187
D +++ SPAM++V+DLA++A IP++++GE GVGK+ ++R I G
Sbjct: 119 AGRRSRSGSVGFDDIVSASPAMLRVIDLAQRAAQSNIPVVLEGESGVGKELVARAIQSGG 178
Query: 188 KRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGTIVLEEPDALP 246
R+ PF VNCG I + +E LFG + T + + +GKF+EA+GGTI L+E LP
Sbjct: 179 DRSNKPFVTVNCGAIPHNLVESILFGHEKGAFTGATERHIGKFMEADGGTIFLDEIGDLP 238
Query: 247 LAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFL 306
L VQ ++ ++ G+IE +R A +++VRLI T K+L+ +VK+ FR+DLYYR++VF
Sbjct: 239 LEVQVKLLRAVQQGEIETVGARTAHKVNVRLISATNKDLIEEVKNGHFREDLYYRLNVFP 298
Query: 307 INISTLRSRSEDIPWLVHFFLQSFCT--KNAIKQISISDKALSLLTKYPWIDNVQELKNI 364
I I LR R EDIP LV F F + KN ++++++ L+LLT Y W N+++L+N
Sbjct: 299 ITIPALRKRKEDIPHLVRVFADRFSSEQKNG-RRMTVNAGTLALLTAYDWPGNIRQLENA 357
Query: 365 LLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTI---------- 414
+ RAV+ + LTE F + ++ E + A G D
Sbjct: 358 IFRAVVLAEGPELTEADFPQIAAQ--LPEYDVVDHLALVADNTGLDPDNGYGEDFRASMS 415
Query: 415 ------LDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTL 468
L S+ +I ++ G+VR+L+D+E+E+I A+K YR QMS+VAR+LGIGRSTL
Sbjct: 416 GEVHHRLSEASENAIASVNPAGDVRKLADVEEELIRFALKFYRGQMSQVARKLGIGRSTL 475
Query: 469 YRKIREYNIEVDS 481
YRK+++Y I+ D+
Sbjct: 476 YRKLKDYGIDPDN 488