BLAST/PSIBLAST alignment of GI: 254780916 and GI: 227823368 at iteration 1
>gi|227823368|ref|YP_002827340.1| sigma-54 dependent DNA-binding response regulator [Sinorhizobium fredii NGR234] Length = 514
>gi|227342369|gb|ACP26587.1| sigma-54 dependent DNA-binding response regulator [Sinorhizobium fredii NGR234] Length = 514
 Score =  292 bits (747), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 174/504 (34%), Positives = 282/504 (55%), Gaps = 35/504 (6%)

Query: 13  VLIIDKDDEQIKIIKDHVESYGYDVFIVN--VSDLSTISK--IQVNVIFLSLINCEDDKE 68
           +L+ID D  Q +++ + +E  G+   + +   S L  + +    +NVI L L+  E +  
Sbjct: 5   ILVIDDDPVQRRLLTNMIERLGHVAHLADNGRSGLELLERKGGMINVILLDLLMPEMNGH 64

Query: 69  NILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICAL---- 124
             L+ + ++    P+IVQT Q  I+ +   +      F +  VS ++L  +I  AL    
Sbjct: 65  GFLEALAERGIDTPVIVQTGQGGIETVVQAMQAGAFDFLVKPVSPERLSIAIGNALKMAS 124

Query: 125 REGVVPSQENEHCA---LDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSR 181
           R+G V +           D +++ SPAMI+V+DLAR+A    IP++++GE GVGK+ ++R
Sbjct: 125 RDGRVKTARRPRGGAIGFDDIVSASPAMIRVLDLARRAAQSNIPVVLEGESGVGKEMVAR 184

Query: 182 FIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGTIVLE 240
            I  +  RA  PF  VNCG I  + +E  LFG +    T  + +  GKF++A+GGT+ L+
Sbjct: 185 AIQAASDRASKPFVTVNCGAIPHNLVESILFGHEKGAFTGATEKHSGKFVDADGGTLFLD 244

Query: 241 EPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYY 300
           E   LPL VQ ++   ++ G+IE   +R   R++VRLI  T K+L+ +V+   FR+DLYY
Sbjct: 245 EIGDLPLEVQVKLLRAVQQGEIETVGARQPQRVNVRLISATNKDLINEVREGRFREDLYY 304

Query: 301 RISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQ-ISISDKALSLLTKYPWIDNVQ 359
           R++VF I I  LR R EDIP LV  F++ F  +  + Q +++S  A++LLT Y W  N++
Sbjct: 305 RLNVFPITIPALRRRKEDIPVLVRAFVERFTAEQRLNQPVTVSSGAMALLTAYDWPGNIR 364

Query: 360 ELKNILLRAVIGLKDSHLT----------------EDRFVLLLSREGKKEREFHTETACT 403
           +L+N + RAV+  +   LT                 DR        G + R     TA  
Sbjct: 365 QLENAIFRAVVLAEGGELTVKDFPQIATQIPGYVVADRSGFSWGEAGPERRPPAGATATV 424

Query: 404 CYTE------GKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEV 457
             +        +    + +  S+ +I ++ + GEVR+L+++E+E+I  A+K YR QMS+V
Sbjct: 425 LPSRPDIPERSEPFGPVPEGRSENAIASVDEGGEVRKLAEVEEELIRFALKFYRGQMSQV 484

Query: 458 ARRLGIGRSTLYRKIREYNIEVDS 481
           AR+LGIGRSTLYRK+++Y I+ D+
Sbjct: 485 ARKLGIGRSTLYRKLKDYGIDPDN 508