BLAST/PSIBLAST alignment of GI: 254780916 and GI: 332716497 at iteration 1
>gi|332716497|ref|YP_004443963.1| sigma 54 dependent transcriptional activator [Agrobacterium sp. H13-3] Length = 514
>gi|325063182|gb|ADY66872.1| sigma 54 dependent transcriptional activator [Agrobacterium sp. H13-3] Length = 514
Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 173/503 (34%), Positives = 276/503 (54%), Gaps = 35/503 (6%)
Query: 13 VLIIDKDDEQIKIIKDHVESYGYDVFIV--NVSDLSTISKI--QVNVIFLSLINCEDDKE 68
VL+ID D Q +++K+ VE YG+ + + L + + ++NV+ L L+ E D
Sbjct: 5 VLVIDDDPVQRRLLKNAVERYGHLALLAENGRAGLELLKQYSGEINVVVLDLMMPEMDGL 64
Query: 69 NILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICAL---- 124
LK + + VP+IVQT Q I + + F + VS +++ +I AL
Sbjct: 65 AFLKAVGELGTDVPVIVQTGQGGIDTVVQAMRAGAFDFVVKPVSPERIGAAISNALKLDR 124
Query: 125 REGVVPSQE---NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSR 181
RE + + +++ SPAM++V++LA++A +IP++++GE GVGK+ ++R
Sbjct: 125 REAKARTGRRGRSNAVNFTDIVSASPAMLRVIELAQRAAQSSIPVVLEGESGVGKEMVAR 184
Query: 182 FIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGTIVLE 240
I +G RA PF VNCG I + +E LFG + T + + +GKF+EA+GGT+ L+
Sbjct: 185 AIQSAGDRANKPFITVNCGAIPHNLVESILFGHEKGAFTGATEKHVGKFMEADGGTLFLD 244
Query: 241 EPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYY 300
E LPL VQ ++ ++ G+IE S +++VRLI T KNL+ +VK FR+DLYY
Sbjct: 245 EIGDLPLDVQVKLLRAVQQGEIETVGSARVQKVNVRLISATNKNLIEEVKEGRFREDLYY 304
Query: 301 RISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQ-ISISDKALSLLTKYPWIDNVQ 359
R++VF I I LR R EDIP L F + F + + + + AL+LLT Y W N++
Sbjct: 305 RLNVFPITIPALRRRKEDIPHLARVFAERFSVEQKLPNPVGLDASALALLTAYDWPGNIR 364
Query: 360 ELKNILLRAVIGLKDSHLTEDRF---VLLLSREGKKEREFHTETACTCYT---------- 406
+L+N + RAV+ + L + F L L ++ + + + +
Sbjct: 365 QLENAVFRAVVLSQGEELADSDFPQIALQLPEFAGRDDAGESIRSPSGSSLKLAAYSPPP 424
Query: 407 EGKSSDTILDNLSQES---------IPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEV 457
S ILD S S I ++ G +R+L++IE+E+I A++ YR QMS+V
Sbjct: 425 PAAESHAILDEASDISTTIYRGGNLISSMDDSGNIRKLAEIEEELIRFALRFYRGQMSQV 484
Query: 458 ARRLGIGRSTLYRKIREYNIEVD 480
AR+LGIGRSTLYRK+++Y I+ D
Sbjct: 485 ARKLGIGRSTLYRKLKDYGIDPD 507