BLAST/PSIBLAST alignment of GI: 254780916 and GI: 332716497 at iteration 1
>gi|332716497|ref|YP_004443963.1| sigma 54 dependent transcriptional activator [Agrobacterium sp. H13-3] Length = 514
>gi|325063182|gb|ADY66872.1| sigma 54 dependent transcriptional activator [Agrobacterium sp. H13-3] Length = 514
 Score =  273 bits (698), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 173/503 (34%), Positives = 276/503 (54%), Gaps = 35/503 (6%)

Query: 13  VLIIDKDDEQIKIIKDHVESYGYDVFIV--NVSDLSTISKI--QVNVIFLSLINCEDDKE 68
           VL+ID D  Q +++K+ VE YG+   +     + L  + +   ++NV+ L L+  E D  
Sbjct: 5   VLVIDDDPVQRRLLKNAVERYGHLALLAENGRAGLELLKQYSGEINVVVLDLMMPEMDGL 64

Query: 69  NILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICAL---- 124
             LK + +    VP+IVQT Q  I  +   +      F +  VS +++  +I  AL    
Sbjct: 65  AFLKAVGELGTDVPVIVQTGQGGIDTVVQAMRAGAFDFVVKPVSPERIGAAISNALKLDR 124

Query: 125 REGVVPSQE---NEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSR 181
           RE    +     +       +++ SPAM++V++LA++A   +IP++++GE GVGK+ ++R
Sbjct: 125 REAKARTGRRGRSNAVNFTDIVSASPAMLRVIELAQRAAQSSIPVVLEGESGVGKEMVAR 184

Query: 182 FIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGTIVLE 240
            I  +G RA  PF  VNCG I  + +E  LFG +    T  + + +GKF+EA+GGT+ L+
Sbjct: 185 AIQSAGDRANKPFITVNCGAIPHNLVESILFGHEKGAFTGATEKHVGKFMEADGGTLFLD 244

Query: 241 EPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYY 300
           E   LPL VQ ++   ++ G+IE   S    +++VRLI  T KNL+ +VK   FR+DLYY
Sbjct: 245 EIGDLPLDVQVKLLRAVQQGEIETVGSARVQKVNVRLISATNKNLIEEVKEGRFREDLYY 304

Query: 301 RISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQ-ISISDKALSLLTKYPWIDNVQ 359
           R++VF I I  LR R EDIP L   F + F  +  +   + +   AL+LLT Y W  N++
Sbjct: 305 RLNVFPITIPALRRRKEDIPHLARVFAERFSVEQKLPNPVGLDASALALLTAYDWPGNIR 364

Query: 360 ELKNILLRAVIGLKDSHLTEDRF---VLLLSREGKKEREFHTETACTCYT---------- 406
           +L+N + RAV+  +   L +  F    L L     ++    +  + +  +          
Sbjct: 365 QLENAVFRAVVLSQGEELADSDFPQIALQLPEFAGRDDAGESIRSPSGSSLKLAAYSPPP 424

Query: 407 EGKSSDTILDNLSQES---------IPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEV 457
               S  ILD  S  S         I ++   G +R+L++IE+E+I  A++ YR QMS+V
Sbjct: 425 PAAESHAILDEASDISTTIYRGGNLISSMDDSGNIRKLAEIEEELIRFALRFYRGQMSQV 484

Query: 458 ARRLGIGRSTLYRKIREYNIEVD 480
           AR+LGIGRSTLYRK+++Y I+ D
Sbjct: 485 ARKLGIGRSTLYRKLKDYGIDPD 507