BLAST/PSIBLAST alignment of GI: 254780916 and GI: 86359139 at iteration 1
>gi|86359139|ref|YP_471031.1| sigma-54-dependent transcriptional regulator (activator) protein [Rhizobium etli CFN 42] Length = 513
>gi|86283241|gb|ABC92304.1| sigma-54-dependent transcriptional regulator (activator) protein [Rhizobium etli CFN 42] Length = 513
 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 178/505 (35%), Positives = 292/505 (57%), Gaps = 44/505 (8%)

Query: 12  RVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSDLSTISKIQV-------NVIFLSLINCE 64
           ++L+++ D  Q +++K+ +E +G+   +V+ ++   I    V       NVI L L+  E
Sbjct: 12  QILVVEDDPVQRRLLKNAIERHGH---VVHQAENGRIGLEMVKRDSGLFNVIVLDLMMPE 68

Query: 65  DDKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICAL 124
                 L  + +    +P+IVQT Q  I+ +   +      F +  VS +++  SI  A+
Sbjct: 69  MTGLEFLDALHEFGTQIPVIVQTGQGGIETVVQAMRAGAFDFVVKPVSPERIATSISNAM 128

Query: 125 R--EGVVPSQENEHC-----ALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKK 177
           +  +  V ++            D +++ SPAMI+V+DLA++A    IP++++GE GVGK+
Sbjct: 129 KLDQREVKARAGRRSRAGSVGFDDIVSASPAMIRVIDLAQRAAQSNIPVVLEGESGVGKE 188

Query: 178 RLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGT 236
            ++R I   G+R+  PF  VNCG I  + +E  LFG +    T  + + +GKF+EA+GGT
Sbjct: 189 LVARAIQSGGERSNKPFVTVNCGAIPHNLVESILFGHEKGAFTGATERHIGKFMEADGGT 248

Query: 237 IVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRK 296
           I L+E   LPL VQ ++   ++ G+IE   +R A +++VRLI  T K+L+ +VK+  FR+
Sbjct: 249 IFLDEIGDLPLEVQVKLLRAVQQGEIETVGARTAHKVNVRLISATNKDLIEEVKNGHFRE 308

Query: 297 DLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCT--KNAIKQISISDKALSLLTKYPW 354
           DLYYR++VF I I  LR R EDIP LV  F   F +  KN  ++++++  AL+LLT Y W
Sbjct: 309 DLYYRLNVFPITIPALRKRKEDIPHLVRVFADRFSSEQKNG-RRMTVNSGALALLTAYDW 367

Query: 355 IDNVQELKNILLRAVIGLKDSHLTE----------------DRFVLLLSREGKKEREFHT 398
             N+++L+N + RAV+  +   LTE                D   L+    G +  E ++
Sbjct: 368 PGNIRQLENAIFRAVVLAEGPELTEADFPQIAAQLPEYEVVDHLALVADNTGLEPDEAYS 427

Query: 399 ET--ACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSE 456
           E   A T +   + S+T     S+ +I ++   G+VR+L+D+E+E+I  A+K YR QMS+
Sbjct: 428 EEYRAPTEFHHHRLSET-----SENAIASVNPSGDVRKLADVEEELIRFALKFYRGQMSQ 482

Query: 457 VARRLGIGRSTLYRKIREYNIEVDS 481
           VAR+LGIGRSTLYRK+++Y I+ D+
Sbjct: 483 VARKLGIGRSTLYRKLKDYGIDPDN 507