RPSBLAST alignment for GI: 254780916 and conserved domain: TIGR01817

>gnl|CDD|162544 TIGR01817, nifA, Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. Length = 534

 Score =  163 bits (415), Expect = 9e-41
 Identities = 112/363 (30%), Positives = 170/363 (46%), Gaps = 16/363 (4%)

Query: 123 ALREGVVPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRF 182
            LR+             D +I  SPAM QVVD AR        ++++GE G GK+ +++ 
Sbjct: 179 QLRDKAPEIARRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKA 238

Query: 183 IHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGTIVLEE 241
           IH    RA  PF  VNC  + +  +E  LFG +    T   AQ  G+F  A+GGT+ L+E
Sbjct: 239 IHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDE 298

Query: 242 PDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYR 301
              +  A Q ++   ++ G+ E       +++DVRL+  T ++L   V    FR DLYYR
Sbjct: 299 IGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYR 358

Query: 302 ISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQEL 361
           I+V  I +  LR R EDIP L   FL+ F  +N  + ++I+  A+ +L    W  NV+EL
Sbjct: 359 INVVPIFLPPLRERREDIPLLAEAFLEKFNRENG-RPLTITPSAIRVLMSCKWPGNVREL 417

Query: 362 KNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQE 421
           +N L R     +   +T   F        +  +      A TC     S D +       
Sbjct: 418 ENCLERTATLSRSGTITRSDFSC------QSGQCLSPMLAKTCPHGHISIDPLAGTTPPH 471

Query: 422 SIPAIGQDGEVR----RLSDIEKEIIGLAMKLYRAQMSEVARRLGIG-RSTLYRKIREYN 476
           S  +    GE       LS+ E+ I   A++      ++ AR LG+  R   Y  +R+ N
Sbjct: 472 SPASAALPGEPGLSGPTLSERERLI--AALEQAGWVQAKAARLLGMTPRQVGYA-LRKLN 528

Query: 477 IEV 479
           IE+
Sbjct: 529 IEM 531