RPSBLAST alignment for GI: 254780916 and conserved domain: COG3829

>gnl|CDD|33622 COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]. Length = 560

 Score =  213 bits (544), Expect = 9e-56
 Identities = 110/343 (32%), Positives = 169/343 (49%), Gaps = 29/343 (8%)

Query: 139 LDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVN 198
            D +I  SPAM++V++LA++       ++I GE G GK+  +R IH    RA  PF  +N
Sbjct: 244 FDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAIN 303

Query: 199 CGMIDQDKIEKFLFGDVD---LQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYN 255
           C  I +  +E  LFG             +  G F  ANGGT+ L+E   +PL +Q ++  
Sbjct: 304 CAAIPETLLESELFGYEKGAFTGASKGGK-PGLFELANGGTLFLDEIGEMPLPLQAKLLR 362

Query: 256 FIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLINISTLRSR 315
            ++  +IE       I +DVR+I  T +NL   +    FR+DLYYR++V  I I  LR R
Sbjct: 363 VLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRER 422

Query: 316 SEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDS 375
            EDIP L  +FL  F  +       +S  AL+LL +Y W  NV+EL+N++ RAV  ++  
Sbjct: 423 KEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAVNLVESD 482

Query: 376 HLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRL 435
            L +   +   + E K+ R                          E+   I        L
Sbjct: 483 GLIDADDLPAFALEEKEPR-------------------------PETTKQIEVGSLKEAL 517

Query: 436 SDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREYNIE 478
            + EK +I  A++ +    S+ A+ LGI R+TLYRK+++Y + 
Sbjct: 518 EEYEKHLIREALERHGGNKSKAAKELGISRTTLYRKLKKYGLR 560