RPSBLAST alignment for GI: 254780917 and conserved domain: TIGR01193
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708
Score = 236 bits (603), Expect = 2e-62
Identities = 151/551 (27%), Positives = 285/551 (51%), Gaps = 24/551 (4%)
Query: 39 IVAMITVSLMTSCSAWIMRDVMNAMVASTDIFHVIVVSSTVAGIFIVKGIASFVQNYYLS 98
++A I V+L++ ++ ++ +++ + + + ++S + +I++ I S++Q + L+
Sbjct: 162 VIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLN 221
Query: 99 CAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSVVDIFITSFLRDF 158
G + + + L + M F+ + ++ E+ RFT A+ + ++ ++ FL D
Sbjct: 222 VLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSIIDALASTILSLFL-DM 280
Query: 159 LTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRI---LVKRVRH-IMEQGMVAIGHIIQN 214
LV + + + Q L L +++ P+ + + + ++ H M+ V II++
Sbjct: 281 WILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIED 340
Query: 215 LQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNK--VAKIESATSPIMETISGLSIA 272
L GI +KS E ++ + E D LNK + ++ ++ L +
Sbjct: 341 LN----GIETIKSLTSEAERYSKIDS---EFGDYLNKSFKYQKADQGQQAIKAVTKLILN 393
Query: 273 GIILFSGFLMSKKGTSNAGEIMSFITALLMAY--EPAKRIARTRIILEGGMVGVRCMFSL 330
+IL++G + +G G++++F L++Y P + I + L+ V + +
Sbjct: 394 VVILWTGAYLVMRGKLTLGQLITF--NALLSYFLTPLENIINLQPKLQAARVANNRLNEV 451
Query: 331 LDHPIMIEESPHAVNLPVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGS 390
L G V DV +SY G +LS I+L K T +VG SGS
Sbjct: 452 YLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGS 511
Query: 391 GKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIG 450
GKST+ LL+ + SG I ++G +++DI +LR+ I+Y+ Q+ ++FS ++ N+L+G
Sbjct: 512 GKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLG 571
Query: 451 -RPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGH 509
+ +++E+ + A D I ++P GY T + E GS++SGGQKQRIA+ARA+L D
Sbjct: 572 AKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSK 631
Query: 510 ILVLDEATSALDTHTENLVRQALSRL--MQGRTTIVIAHRISTIIEADHIIFIEDGKVSE 567
+L+LDE+TS LDT TE ++ ++ L +Q +T I +AHR+S ++D II ++ GK+ E
Sbjct: 632 VLILDESTSNLDTITE---KKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIE 688
Query: 568 SGDQKYLLQQK 578
G LL +
Sbjct: 689 QGSHDELLDRN 699