RPSBLAST alignment for GI: 254780917 and conserved domain: TIGR01257
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. Length = 2272
Score = 82.8 bits (204), Expect = 3e-16
Identities = 60/217 (27%), Positives = 109/217 (50%), Gaps = 18/217 (8%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424
G P + +N+ F ++TA +G +G+GK+T +++L + P+SG++ + G +I + +
Sbjct: 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDA 1000
Query: 425 LRERISYVGQDVFLFSN-TVRYNILI-----GRPMATEEEMIEIAKSANAHDFIMSLPQG 478
+R+ + Q LF + TV +IL GR + EE +E+ M G
Sbjct: 1001 VRQSLGMCPQHNILFHHLTVAEHILFYAQLKGR--SWEEAQLEMEA--------MLEDTG 1050
Query: 479 YDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQG 538
E +LSGG ++++++A A + D ++VLDE TS +D ++ + L + G
Sbjct: 1051 LHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSG 1110
Query: 539 RTTIVIAHRISTI-IEADHIIFIEDGKVSESGDQKYL 574
RT I+ H + + D I I G++ SG +L
Sbjct: 1111 RTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFL 1147