RPSBLAST alignment for GI: 254780917 and conserved domain: TIGR02857

>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

 Score =  256 bits (655), Expect = 2e-68
 Identities = 139/505 (27%), Positives = 238/505 (47%), Gaps = 50/505 (9%)

Query: 78  TVAGIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFT 137
            +A   +++ +  ++     + A  ++ ++ + ++   +   G  +     S EL    T
Sbjct: 49  ALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELA---T 105

Query: 138 HATQSVRSVVDIF----ITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRIL 193
            A + V ++   F        L   + L  L  V F  +    L  ++  PL I    IL
Sbjct: 106 LALEGVEALDGYFARYLPQLVLAVIIPLAILAAV-FPADWISGLILLLTAPL-IPIFMIL 163

Query: 194 V-KRVRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNK- 251
           +    +    +   A+  +  +  + + G+  +K F   +         I    +   + 
Sbjct: 164 IGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAK----AQAAAIARSSEEYRER 219

Query: 252 ---VAKIESATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLM------ 302
              V +I   +S ++E  + LS+A + ++ GF +           +   T L +      
Sbjct: 220 TMRVLRIAFLSSAVLELFATLSVALVAVYIGFRL-------LAGDLDLATGLFVLLLAPE 272

Query: 303 AYEPAKRI-----ARTRIILEGGMVGVRCMFSLLDHPIMIEESPHAVNLPVGKGTT---V 354
            Y P +++     AR       G+     +F++LD P      P A   PV         
Sbjct: 273 FYLPLRQLGADYHARAD-----GVAAAEALFAVLDAPR-----PLAGKAPVTAAPAPSLE 322

Query: 355 FRDVFFSYK-QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEID 413
           F  +  +Y  +  P L  ++     G+  ALVGPSG+GKST++NLL+   DP+ GSI ++
Sbjct: 323 FSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVN 382

Query: 414 GINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIM 473
           G+ + D    S R++I++V Q  FLF+ T+  NI + RP A++ E+    + A   +F+ 
Sbjct: 383 GVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVA 442

Query: 474 SLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALS 533
           +LPQG DT +GE G+ LSGGQ QR+A+ARA LRD  +L+LDE T+ LD  TE LV +AL 
Sbjct: 443 ALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALR 502

Query: 534 RLMQGRTTIVIAHRISTIIEADHII 558
            L QGRT +++ HR++    AD I+
Sbjct: 503 ALAQGRTVLLVTHRLALAERADRIV 527