RPSBLAST alignment for GI: 254780917 and conserved domain: cd03240
>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204
Score = 51.4 bits (123), Expect = 7e-07
Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 35/199 (17%)
Query: 376 FKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQD 435
F S +T +VG +G+GK+TII L G + + E + V
Sbjct: 20 FFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREG--EVRAQV--- 73
Query: 436 VFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQG-YDTYVGENGSNLSGGQ 494
+ + G+ I +S + ++ QG + + + SGG+
Sbjct: 74 ------KLAFENANGKKY-------TITRSLAILENVIFCHQGESNWPLLDMRGRCSGGE 120
Query: 495 KQ------RIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTT------I 542
K R+A+A + IL LDE T+ LD E + ++L+ +++ R + I
Sbjct: 121 KVLASLIIRLALAETFGSNCGILALDEPTTNLD---EENIEESLAEIIEERKSQKNFQLI 177
Query: 543 VIAHRISTIIEADHIIFIE 561
VI H + ADHI +E
Sbjct: 178 VITHDEELVDAADHIYRVE 196