RPSBLAST alignment for GI: 254780917 and conserved domain: cd03240

>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204
 Score = 51.4 bits (123), Expect = 7e-07
 Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 35/199 (17%)

Query: 376 FKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQD 435
           F S  +T +VG +G+GK+TII  L              G +   +      E  + V   
Sbjct: 20  FFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREG--EVRAQV--- 73

Query: 436 VFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQG-YDTYVGENGSNLSGGQ 494
                  + +    G+          I +S    + ++   QG  +  + +     SGG+
Sbjct: 74  ------KLAFENANGKKY-------TITRSLAILENVIFCHQGESNWPLLDMRGRCSGGE 120

Query: 495 KQ------RIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTT------I 542
           K       R+A+A     +  IL LDE T+ LD   E  + ++L+ +++ R +      I
Sbjct: 121 KVLASLIIRLALAETFGSNCGILALDEPTTNLD---EENIEESLAEIIEERKSQKNFQLI 177

Query: 543 VIAHRISTIIEADHIIFIE 561
           VI H    +  ADHI  +E
Sbjct: 178 VITHDEELVDAADHIYRVE 196