RPSBLAST alignment for GI: 254780917 and conserved domain: cd03252
>gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.. Length = 237
Score = 227 bits (579), Expect = 9e-60
Identities = 106/238 (44%), Positives = 149/238 (62%), Gaps = 3/238 (1%)
Query: 354 VFRDVFFSYKQGHP-VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI 412
F V F YK P +L I+L K G++ +VG SGSGKST+ L+ R Y P +G + +
Sbjct: 2 TFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLV 61
Query: 413 DGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFI 472
DG ++ + LR ++ V Q+ LF+ ++R NI + P + E +IE AK A AHDFI
Sbjct: 62 DGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFI 121
Query: 473 MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL 532
LP+GYDT VGE G+ LSGGQ+QRIAIARA++ + IL+ DEATSALD +E+ + + +
Sbjct: 122 SELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNM 181
Query: 533 SRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQ 590
+ GRT I+IAHR+ST+ AD II +E G++ E G LL + LY +Y Q
Sbjct: 182 HDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE--NGLYAYLYQLQ 237