RPSBLAST alignment for GI: 254780917 and conserved domain: cd03279

>gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.. Length = 213

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 36/194 (18%)

Query: 381 MTALVGPSGSGKSTIIN-LLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLF 439
           +  + GP+G+GKSTI++ +   +Y  +       G      +  +  E  + V    F F
Sbjct: 30  LFLICGPTGAGKSTILDAITYALYGKTPR----YGRQENLRSVFAPGEDTAEV---SFTF 82

Query: 440 SNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQG-YDTYVGENGSNLSGGQKQRI 498
               +   +        ++             I+ LPQG +D ++    S LSGG+    
Sbjct: 83  QLGGKKYRVERSRGLDYDQFTR----------IVLLPQGEFDRFLARPVSTLSGGETFLA 132

Query: 499 AIARAM-------LRDG---HILVLDEATSALDTHTENLVRQALSRLMQ-GRTTIVIAH- 546
           +++ A+        R G     L +DE    LD      V  AL  +    R   VI+H 
Sbjct: 133 SLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHV 192

Query: 547 -----RISTIIEAD 555
                RI   +E  
Sbjct: 193 EELKERIPQRLEVI 206