RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide
binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62]
(596 letters)
>gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 423 bits (1089), Expect = e-119
Identities = 212/577 (36%), Positives = 345/577 (59%), Gaps = 10/577 (1%)
Query: 17 REMLSRLIRENIHKHVTWYSMSIVAMITVSLMTSCSAWIMRDVMNAMVASTDIFHVIVVS 76
+L RL++ +K ++I+ ++ +L++ ++ +++A++A +++
Sbjct: 1 LSLLRRLLKYLKYK---LLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLL- 56
Query: 77 STVAGIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRF 136
+ + ++ G+ +Q+Y S G I+A+ +R ++ +LL+ + F+D +S +L R
Sbjct: 57 -LLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRL 115
Query: 137 THATQSVRSVVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKR 196
T+ ++V ++V + L L+G +V++F L+L ++I PL L + +L ++
Sbjct: 116 TNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARK 175
Query: 197 VRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIE 256
R + + A+G + L E++ GIR++K+F E+ +R +E+ + +++E
Sbjct: 176 SRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLE 235
Query: 257 SATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRII 316
+ +P+M +S L ++ GFL+ G+ G + +FI LL P ++ +
Sbjct: 236 ALLAPLMLLLSSLGTVLVLALGGFLVLS-GSLTVGALAAFILYLLRLLTPILQLGEVVSL 294
Query: 317 LEGGMVGVRCMFSLLDHPIMIEESPHAVNLPVGKGTTVFRDVFFSYKQGHPVLSGINLCF 376
L+ +F LLD +E+ P L G+ F +V FSY PVL I+
Sbjct: 295 LQRASAAAERLFELLDEEPEVEDPPDP--LKDTIGSIEFENVSFSYPGKKPVLKDISFSI 352
Query: 377 KSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDV 436
+ G+ A+VGPSGSGKST+I LL+R+YDP+SG I IDGI+IRDI+ SLR+RI V QD
Sbjct: 353 EPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDP 412
Query: 437 FLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQ 496
LFS T+R NI +GRP AT+EE+ E K ANAH+FI +LP GYDT VGE G NLSGGQ+Q
Sbjct: 413 LLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQ 472
Query: 497 RIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADH 556
R+AIARA+LR+ IL+LDEATSALDT TE L++ AL +L++GRTT++IAHR+STI AD
Sbjct: 473 RLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADR 532
Query: 557 IIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLE 593
II +++G++ E G + LL + G LY ++Y +Q
Sbjct: 533 IIVLDNGRIVERGTHEELLAK--GGLYARLYQAQGGA 567
>gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 716
Score = 404 bits (1040), Expect = e-113
Identities = 204/568 (35%), Positives = 311/568 (54%), Gaps = 6/568 (1%)
Query: 28 IHKHVTWYSMSIVAMITVSLMTSCSAWIMRDVMNAMVASTDIFHVIVVSSTV-AGIFIVK 86
+ W + V ++ SL+ + + +++ + D + + T+ G+F++
Sbjct: 142 LKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIG 201
Query: 87 GIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSV 146
+A+ ++ L AG ++A + ++R LL+ + F+D N++ EL R T TQ V +
Sbjct: 202 ALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNS 261
Query: 147 VDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKRVRHIMEQGMV 206
V ++ LR+ + G + MF L+L T+I+ P+ L +I K +R + +Q
Sbjct: 262 VSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQD 321
Query: 207 AIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIESATSPIMETI 266
A+ Q +E + +R V+SFA EE +R ++EV L+K + +
Sbjct: 322 ALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLK-LSKKEAVAYGIFFGSTNL 380
Query: 267 SGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRIILEGGMVGVRC 326
G ILF G + G+ +G + SF+ + ++ L G+
Sbjct: 381 LGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASER 440
Query: 327 MFSLLDHPIMIEESPHAVNLPVGKGTTVFRDVFFSY--KQGHPVLSGINLCFKSGKMTAL 384
+F L+D I + + +G F DV F+Y + PVL ++ + G++ AL
Sbjct: 441 VFELMDRKPRIPLTGTLAPDHL-QGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVAL 499
Query: 385 VGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVR 444
VGPSGSGKSTI +LL+R YDP+SG I +DG+ I DI LR +I VGQ+ LFS ++R
Sbjct: 500 VGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIR 559
Query: 445 YNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAM 504
NI G AT+EE+ AK ANAH+FI + P GY+T VGE GS LSGGQKQRIAIARA+
Sbjct: 560 ENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARAL 619
Query: 505 LRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGK 564
LR+ +L+LDEATSALD +E LV++AL RLMQGRT +VIAHR+ST+ AD I+ I+ G+
Sbjct: 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGR 679
Query: 565 VSESGDQKYLLQQKDGSLYKKMYASQLL 592
V E G LL + +G LY K+ QL
Sbjct: 680 VVEMGTHDELLSKPNG-LYAKLVQRQLD 706
>gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC
superfamily [Secondary metabolites biosynthesis,
transport and catabolism].
Length = 1228
Score = 368 bits (945), Expect = e-102
Identities = 192/588 (32%), Positives = 298/588 (50%), Gaps = 11/588 (1%)
Query: 10 KVMSPSDREMLSRLIRENIHKHVTWYSMSIVAMITVSLMTSCSAWIMRDVMNAMVASTD- 68
V ++ R+ + N + + + A++ V+ A D
Sbjct: 642 PVSEEDEKVSFWRIFKLNK-PEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDD 700
Query: 69 --IFHVIVVSSTVAGIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYD- 125
V + G+ IV GI +F+Q+Y+ AG + + ++R LL+ + ++D
Sbjct: 701 ELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDD 760
Query: 126 SNQSSELQVRFTHATQSVRSVVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPL 185
S L R +VR+ V ++ +++ ++ I++ F+ L+L + PL
Sbjct: 761 PENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPL 820
Query: 186 CILGVRILVKRVRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCNMIKEV 245
IL + K ++ + A + E V IR V + EE + +++
Sbjct: 821 LILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKP 880
Query: 246 EDRLNKVAKIESATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYE 305
K I +++ A + L+S + F+ A
Sbjct: 881 RKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMA 940
Query: 306 PAKRIARTRIILEGGMVGVRCMFSLLDHPIMIE-ESPHAVNLPVGKGTTVFRDVFFSYKQ 364
+ + I + + +F +LD I+ +S LP KG FR+V F+Y
Sbjct: 941 LGQASSYAPDISKAKIAAGS-IFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPT 999
Query: 365 --GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITF 422
PVL+ ++L ++G+ ALVGPSGSGKST+I+LL R YDP +G ++IDG++I+D+
Sbjct: 1000 RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNL 1059
Query: 423 SSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTY 482
LR++I V Q+ LF+ T+R NI G +EEE+IE AK ANAH+FI SLPQGYDT
Sbjct: 1060 KWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTR 1119
Query: 483 VGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTI 542
VGE G LSGGQKQRIAIARA+LR+ IL+LDEATSALD+ +E +V++AL R M+GRTTI
Sbjct: 1120 VGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTI 1179
Query: 543 VIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQ 590
VIAHR+STI AD I +++GKV E G LL ++ +Y ++ Q
Sbjct: 1180 VIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKR--GIYFRLVQLQ 1225
Score = 340 bits (874), Expect = 6e-94
Identities = 180/526 (34%), Positives = 274/526 (52%), Gaps = 10/526 (1%)
Query: 77 STVAGIFIVKGIASFVQNY-YLSC---AGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSEL 132
S VA F+ G+ F+ + +SC G A + K + +L+ + ++D+N + EL
Sbjct: 71 SKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGEL 130
Query: 133 QVRFTHATQSVRSVVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRI 192
R + + ++ + + +F++ T + V+ F L+L + PL + +
Sbjct: 131 VTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGL 190
Query: 193 LVKRVRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKV 252
L + + + E+ A +E + IR V +F E+ +R ++ K
Sbjct: 191 LARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKK 250
Query: 253 AKIESATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIAR 312
+ + S A + G + G N G++++ ++L+ + +
Sbjct: 251 GLFKGLGLGFTFFLLFASYALAFWY-GSTLILNGGYNGGDVITVFFSVLIGGMSLGQASP 309
Query: 313 TRIILEGGMVGVRCMFSLLD-HPIMIEESPHAVNLPVGKGTTVFRDVFFSY--KQGHPVL 369
+F +D P + S L KG FR+V FSY + +L
Sbjct: 310 HLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKIL 369
Query: 370 SGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERI 429
G++L SG+ ALVGPSGSGKST+I LL R YDP+SG + IDG +IR++ LR +I
Sbjct: 370 KGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQI 429
Query: 430 SYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSN 489
V Q+ LF+ T+R NI G+P AT EE+ E AK+ANAHDFI+ LP GYDT VGE G
Sbjct: 430 GLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQ 489
Query: 490 LSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRIS 549
LSGGQKQRIAIARA++R+ IL+LDEATSALD +E +V++AL + +GRTTIV+AHR+S
Sbjct: 490 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLS 549
Query: 550 TIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLENL 595
TI AD I +E+GK+ E G L+ G +Y + Q LE
Sbjct: 550 TIRNADKIAVMEEGKIVEQGTHDELI--ALGGIYSSLVRLQELEKA 593
>gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 338 bits (869), Expect = 2e-93
Identities = 180/553 (32%), Positives = 294/553 (53%), Gaps = 5/553 (0%)
Query: 39 IVAMITVSLMTSCSAWIMRDVMNAMVASTDIFHVIVVSSTVAGIFIVKGIASFVQNYYLS 98
++A + + L+ + + V++ ++ + V++ + + + + ++ Y ++
Sbjct: 160 LLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIA 219
Query: 99 CAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSVVDIFITSFLRDF 158
G + E + +R LL+ + +++ E+ R + +R + I + + D
Sbjct: 220 HLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVREL-EQIREFLTGSILTLIIDL 278
Query: 159 LTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKRVRHIMEQGMVAIGHIIQNLQET 218
L + + VMFL L+L + PL +L I +R + + L ET
Sbjct: 279 LFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVET 338
Query: 219 VIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIESATSPIMETISGLSIAGIILFS 278
+ GI VK+ A E + N + + + K K+ + I + LS I+ F
Sbjct: 339 IKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFG 398
Query: 279 GFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPIMIE 338
L+ + + G++++F P R+++ + V + + +LD P E
Sbjct: 399 AILVLEGELT-LGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQE 457
Query: 339 ESPHAVNLPVGKGTTVFRDVFFSYKQGHP-VLSGINLCFKSGKMTALVGPSGSGKSTIIN 397
++LP +G F +V F Y P VL ++L G+ A+VG SGSGKST++
Sbjct: 458 GDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLK 517
Query: 398 LLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEE 457
LL+ +Y P G I +DG+++ DI +SLR ++ YV QD FLFS ++R NI +G P AT+E
Sbjct: 518 LLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDE 577
Query: 458 EMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEAT 517
E+IE A+ A AH+FI +LP GYDT VGE G+NLSGGQ+QR+A+ARA+L IL+LDEAT
Sbjct: 578 EIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEAT 637
Query: 518 SALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQ 577
SALD TE ++ Q L +++QGRT I+IAHR+STI AD II ++ GK+ E G + LL Q
Sbjct: 638 SALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697
Query: 578 KDGSLYKKMYASQ 590
G LY ++Y Q
Sbjct: 698 --GGLYARLYQQQ 708
>gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely
related to eukaryotic MDR proteins. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 234
Score = 316 bits (811), Expect = 1e-86
Identities = 138/235 (58%), Positives = 173/235 (73%), Gaps = 3/235 (1%)
Query: 354 VFRDVFFSY-KQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI 412
F++V F Y G PVL I+L +G+ ALVGPSGSGKST++NL+ R YD SG I I
Sbjct: 2 EFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILI 61
Query: 413 DGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFI 472
DG ++RD T +SLR +I V QDVFLF++TV NI GRP AT EE+ E A++ANAH+FI
Sbjct: 62 DGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFI 121
Query: 473 MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL 532
M LP+GYDT +GE G LSGGQ+QRIAIARA+L+D IL+LDEATSALDT +E LV+ AL
Sbjct: 122 MELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAAL 181
Query: 533 SRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMY 587
RLM+ RTT VIAHR+STI AD I+ +EDGK+ E G + LL Q G +Y K++
Sbjct: 182 ERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ--GGVYAKLH 234
>gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a
mitochondrial ATP-binding cassette protein involved in
iron homeostasis and one of four ABC transporters
expressed in the mitochondrial inner membrane, the other
three being MDL1(ABC7), MDL2, and ATM1. In fact, the
yeast MDL1 (multidrug resistance-like protein 1) and
MDL2 (multidrug resistance-like protein 2) transporters
are also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another..
Length = 238
Score = 314 bits (807), Expect = 4e-86
Identities = 132/239 (55%), Positives = 168/239 (70%), Gaps = 4/239 (1%)
Query: 354 VFRDVFFSY--KQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIE 411
F++V F Y + P+L G++L GK ALVG SG GKST+++LL R YDP+SG I
Sbjct: 2 EFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL 61
Query: 412 IDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDF 471
+DG++IRD+ LR +I V Q+ LF T+ NI G+P AT+EE+ E AK AN HDF
Sbjct: 62 LDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDF 121
Query: 472 IMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQA 531
IMSLP GYDT VGE GS LSGGQKQRIAIARA+LR+ IL+LDEATSALD +E LV++A
Sbjct: 122 IMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEA 181
Query: 532 LSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQ 590
L R M+GRTTIVIAHR+STI AD I +++G+V E G L+ QK +Y K+ +Q
Sbjct: 182 LDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK--GVYAKLVKAQ 238
>gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC
superfamily [Inorganic ion transport and metabolism].
Length = 790
Score = 310 bits (795), Expect = 7e-85
Identities = 167/483 (34%), Positives = 259/483 (53%), Gaps = 8/483 (1%)
Query: 111 KIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVR--SVVDIFITSFLRDFLTLVGLIVVM 168
+++R L + ++ + ++ E+ T SV V I L D + +
Sbjct: 297 ELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVTLLEYVVFQIGPTLLDLGVAMVYFFIK 356
Query: 169 FLQEPTLSLCTIIIGPLCILGVRILVKRVRHIMEQGMVAIGHIIQNLQ-ETVIGIRIVKS 227
F L + + L V I + R + M + + Q ++++ VK
Sbjct: 357 FNIWFGL---IVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKY 413
Query: 228 FAMEEVMNQRMCNMIKEVEDRLNKVAKIESATSPIMETISGLSIAGIILFSGFLMSKKGT 287
+ E+ +R I + + + K + + + I GL + L + ++++ T
Sbjct: 414 YNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQ-T 472
Query: 288 SNAGEIMSFITALLMAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPIMIEESPHAVNLP 347
G+ + F+T L+ Y P ++ + + MF LL + + P A L
Sbjct: 473 LTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLK 532
Query: 348 VGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSS 407
V +G F +V F+Y G PVLS I+ + GK ALVGPSG+GKSTI+ LL R +D +S
Sbjct: 533 VTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNS 592
Query: 408 GSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSAN 467
GSI IDG +IR++T SSLR I V QD LF++T+ YNI +P A+ EE+ AK+A
Sbjct: 593 GSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQ 652
Query: 468 AHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527
HD I+ P+GY+T VGE G LSGG+KQR+AIAR +L+ I++LDEATSALDT+TE
Sbjct: 653 IHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERA 712
Query: 528 VRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMY 587
++ AL+RL RTTIV+AHR+STI+ AD I+ I +G++ E G + LL++ G+ Y M+
Sbjct: 713 IQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGA-YADMW 771
Query: 588 ASQ 590
+Q
Sbjct: 772 QAQ 774
>gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding
protein. In A. tumefaciens cyclic beta-1, 2-glucan must
be transported into the periplasmic space to exert its
action as a virluence factor. This subfamily belongs to
the MRP-like family and is involved in drug, peptide,
and lipid export. The MRP-like family, similar to all
ABC proteins, have a common four-domain core structure
constituted by two membrane-spanning domains each
composed of six transmembrane (TM) helices and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 229
Score = 307 bits (789), Expect = 5e-84
Identities = 135/229 (58%), Positives = 168/229 (73%)
Query: 351 GTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSI 410
G F +V FSY + PVL IN K G+ A+VGP+G+GK+T+INLLMR YDP G I
Sbjct: 1 GEIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 411 EIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHD 470
IDGI+IRDI+ SLR I V QD FLFS T+ NI +GRP AT+EE+IE AK A AHD
Sbjct: 61 LIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHD 120
Query: 471 FIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQ 530
FIM LP GYDT +GENG NLS G++Q +AIARAMLRD IL+LDEATS +DT TE L+++
Sbjct: 121 FIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQE 180
Query: 531 ALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKD 579
AL +LM+GRT+I+IAHR+STI AD I+ ++DGK+ E G LL +K
Sbjct: 181 ALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229
>gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is
expressed in the mitochondria. Although the specific
function of ATM1 is unknown, its disruption results in
the accumulation of excess mitochondrial iron, loss of
mitochondrial cytochromes, oxidative damage to
mitochondrial DNA, and decreased levels of cytosolic
heme proteins. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 236
Score = 307 bits (787), Expect = 8e-84
Identities = 134/237 (56%), Positives = 171/237 (72%), Gaps = 2/237 (0%)
Query: 354 VFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEID 413
F +V F+Y G PVL ++ +GK A+VGPSGSGKSTI+ LL R YD SSGSI ID
Sbjct: 2 EFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILID 61
Query: 414 GINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIM 473
G +IR++T SLR I V QD LF++T+ YNI GRP AT+EE+IE AK+A HD IM
Sbjct: 62 GQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIM 121
Query: 474 SLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALS 533
P GYDT VGE G LSGG+KQR+AIARA+L++ IL+LDEATSALDTHTE ++ AL
Sbjct: 122 RFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALR 181
Query: 534 RLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQ 590
+ +GRTTIVIAHR+STI+ AD II ++DG++ E G + LL + G LY +M+ +Q
Sbjct: 182 DVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK--GGLYAEMWKAQ 236
>gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 294 bits (753), Expect = 7e-80
Identities = 140/561 (24%), Positives = 280/561 (49%), Gaps = 12/561 (2%)
Query: 37 MSIVAMITV--SLMTSCSAWIMRDVMNAMVASTDIFHVIVVSSTVAGIFIVKGIASFVQN 94
+ I A++ V + A ++ D++ ++ ++ + + +++ ++++
Sbjct: 2 LVISALLAVLSGIAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRE 61
Query: 95 YYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSVVDIFITSF 154
A + A ++ + +L + G F + + + ++
Sbjct: 62 RLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQM 121
Query: 155 LRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKRVRHIMEQGMVAIGHIIQN 214
+ + +++ +F +L +I PL L + ++ + E+ A+ + +
Sbjct: 122 FLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGH 181
Query: 215 LQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIESATSPIMETISGLSIAGI 274
+ + G+ +++F E +R+ ++ V +I +S ++E + LSIA +
Sbjct: 182 FLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALV 241
Query: 275 ILFSGFLMSKKGTSNAGEIMSFITALLMA---YEPAKRIARTRIILEGGMVGVRCMFSLL 331
++ GF + +G + + + L++A ++P + + G +F+LL
Sbjct: 242 AVYIGFRLLGEGDLT---LFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLL 298
Query: 332 DHPIMIEESPHAVNLPVGKGTTV-FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGS 390
+ P+ S + + ++ F Y G P LS +NL K+G++TALVG SG+
Sbjct: 299 ESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGA 358
Query: 391 GKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIG 450
GKST++NLL+ P+ G I ++GI++RD++ + R++IS+V Q+ +LF+ T+R NIL+
Sbjct: 359 GKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLA 418
Query: 451 RPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHI 510
RP A++EE+I A +F+ P G DT +GE G+ LSGGQ QR+A+ARA+L +
Sbjct: 419 RPDASDEEIIAALDQAGLLEFV-PKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASL 477
Query: 511 LVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGD 570
L+LDE T+ LD TE ++ QAL L + +T +VI HR+ +AD I+ +++G++ E G
Sbjct: 478 LLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGT 537
Query: 571 QKYLLQQKDGSLYKKMYASQL 591
+ L +++ LY + Q
Sbjct: 538 HEELSEKQ--GLYANLLKQQE 556
>gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 270 bits (692), Expect = 7e-73
Identities = 166/499 (33%), Positives = 253/499 (50%), Gaps = 11/499 (2%)
Query: 94 NYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSVVDIFITS 153
+ S G + + L + F+ ++ L T+ + +++ + +
Sbjct: 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFN 62
Query: 154 FLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPL---CILGVRILVKRVRHIMEQGMVAIGH 210
L + + L+ V+ + + + + V + R + M
Sbjct: 63 ILPTLVEI-SLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDF--RRLMNNADS 119
Query: 211 IIQNLQ-ETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIESATSPIMETISGL 269
++++ VK F EE R + ++ E KV + I
Sbjct: 120 DANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFST 179
Query: 270 SIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRIILEGGMVGVRCMFS 329
+ ++ S + + G G++++ L P + + + + + MF
Sbjct: 180 GLRVMMTMSALGVEE-GQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFD 238
Query: 330 LLDHPIMIEESPHAVNL-PVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPS 388
LLD + ++P A L PV G F +V F+Y P+L+GI+ GK A+VG S
Sbjct: 239 LLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGES 298
Query: 389 GSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNIL 448
G+GKSTI+ LL R YD +SGSI IDG +IRD+T SLR I V QD LF++T+ YNI
Sbjct: 299 GAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIK 358
Query: 449 IGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDG 508
GRP AT EE+ A++A HDFI SLP+GYDT VGE G LSGG+KQR+AIAR +L++
Sbjct: 359 YGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNP 418
Query: 509 HILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSES 568
IL+LDEATSALDTHTE ++ AL + GRTT+VIAHR+STII+AD II +++G++ E
Sbjct: 419 PILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478
Query: 569 GDQKYLLQQKDGSLYKKMY 587
G + LL G LY +M+
Sbjct: 479 GTHEELLAA--GGLYAEMW 495
>gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC
superfamily [Intracellular trafficking, secretion, and
vesicular transport].
Length = 591
Score = 269 bits (690), Expect = 1e-72
Identities = 156/560 (27%), Positives = 273/560 (48%), Gaps = 15/560 (2%)
Query: 38 SIVAMITVSLMTSCSAWIMRDVMNAMVASTDIFHVIVVSSTVAGIFIVKGIASFV----Q 93
++ ++ ++ +I + +++ + + V+ + + + + + S V +
Sbjct: 35 ALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELR 94
Query: 94 NYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSVVDIFITS 153
N+ + +I + ++R L+ + F+ S + L ++++ V+ + +
Sbjct: 95 NFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFN 154
Query: 154 FLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKRVRHIMEQGM-VAIGHII 212
+ + + +++ + + I+V R R+ + M A
Sbjct: 155 IIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSAS 214
Query: 213 QNLQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIESATSPIMETISGLSIA 272
+ +++I IVKSF EE R +K E K + + + + I +++
Sbjct: 215 RRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALT 274
Query: 273 GIIL--FSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRIILEGGMVGVRCMFSL 330
I++ +G K + + S + L + P + L + +R +F L
Sbjct: 275 FIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSL---PLNFLGSVYRELRQALTDMRTLFIL 331
Query: 331 LDHPIMIEESPHAVNLPVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGS 390
L+ I+E+ + L G+ F DV FSY VL G++ G+ A+VG +GS
Sbjct: 332 LEVDEDIQEAALPIELF--GGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGS 389
Query: 391 GKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIG 450
GKSTI+ LL+R +D SGSI IDG +I++++ SLR+ I V QD LF++T+ YNI G
Sbjct: 390 GKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYG 448
Query: 451 RPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHI 510
P A++EE++E K A HD I LP GY T VGE G LSGG+KQR+++ARA L+D I
Sbjct: 449 NPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPI 508
Query: 511 LVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGD 570
L+LDEATSALD+ TE + + +M GRT I+I HR+ + + D II +++G V E G
Sbjct: 509 LLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGT 568
Query: 571 QKYLLQQKDGSLYKKMYASQ 590
LL LY ++ +Q
Sbjct: 569 HSELLAP--SELYADLWTTQ 586
>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
protein/mitoxantrone resistance protein, ABC superfamily
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 1381
Score = 267 bits (684), Expect = 7e-72
Identities = 140/559 (25%), Positives = 252/559 (45%), Gaps = 12/559 (2%)
Query: 32 VTWYSMSIVAMITVSLMTSCSAWIMRDVMNAMVASTDIFHVIVVSSTVAGIFIVKGIASF 91
+ + + + V + S + W+ + T A + + + +
Sbjct: 818 LVLLILLLFVLTQVLQIAS-NYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTL 876
Query: 92 VQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSVVDIFI 151
++++ + G + K+ +L+ M F+D+ + + RF+ +V ++ +
Sbjct: 877 LRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTL 936
Query: 152 TSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKRVRHIMEQGMVAIGHI 211
FL+ L ++G++VV+ P + I +G + R + R + + I
Sbjct: 937 EFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPI 996
Query: 212 IQNLQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIESATSPIMETISGLSI 271
+ ET+ G+ +++F EE Q +I E + +E + L +
Sbjct: 997 YSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVV 1056
Query: 272 AGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRIILEGGMVGVRCMFSLL 331
LF ++ G + G + ++ L + + R LE MV V +
Sbjct: 1057 LIAALF--AVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYT 1114
Query: 332 DHPIMIEESPHAVNLPVG---KGTTVFRDVFFSYKQGHP-VLSGINLCFKSGKMTALVGP 387
D P P KG F D+ Y+ P VL GI+ K G+ +VG
Sbjct: 1115 DIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGR 1174
Query: 388 SGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNI 447
+G+GKS++I L R+ +P+ G I IDG++I I LR R+S + QD LFS TVR+N+
Sbjct: 1175 TGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNL 1234
Query: 448 LIGRPMA--TEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAML 505
P +++E+ E + D + SLP G D+ V E G N S GQ+Q + +ARA+L
Sbjct: 1235 ---DPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALL 1291
Query: 506 RDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKV 565
R ILVLDEAT+++D T+ L+++ + + T + IAHR++T++++D ++ ++ G+V
Sbjct: 1292 RKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRV 1351
Query: 566 SESGDQKYLLQQKDGSLYK 584
E LL KD
Sbjct: 1352 VEFDSPAELLSDKDSLFSS 1370
Score = 180 bits (458), Expect = 1e-45
Identities = 121/522 (23%), Positives = 231/522 (44%), Gaps = 27/522 (5%)
Query: 79 VAGIFIVKGIASFVQN---YYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVR 135
+F+ + S + + + G + + IYR+ L+ E+
Sbjct: 245 AVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNL 304
Query: 136 FTHATQSVRSVVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVK 195
+ Q + F+ L ++ + +++ +L + + L I L K
Sbjct: 305 MSVDAQRLSDAA-CFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAK 363
Query: 196 RVRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKI 255
++ ++ M I+ + E + GI+++K +A E+ +++ ++ ++ L K A +
Sbjct: 364 KIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYL 423
Query: 256 ESATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRI 315
+ S + + ++ F F++ A + + + P +
Sbjct: 424 SALNSFLNFFSP--VLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVIS 481
Query: 316 ILEGGMVGVRCMFSLLDHPIMIEESPHAVNLPVGKGTTVFRDVFFSYKQGH--PVLSGIN 373
L V ++ + L + +S G+ ++ FS+ P L IN
Sbjct: 482 QLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDIN 541
Query: 374 LCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVG 433
K G++ A+VGP GSGKS++++ ++ SGS+ ++G ++YV
Sbjct: 542 FEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG-------------SVAYVP 588
Query: 434 QDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDF-IMSLPQGYDTYVGENGSNLSG 492
Q ++ + TVR NIL G P +EE + A A + LP G T +GE G NLSG
Sbjct: 589 QQPWIQNGTVRENILFGSPY--DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSG 646
Query: 493 GQKQRIAIARAMLRDGHILVLDEATSALDTHTEN-LVRQALSRLMQGRTTIVIAHRISTI 551
GQKQRI++ARA+ +D I +LD+ SA+D H + + + L++G+T I++ H++ +
Sbjct: 647 GQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFL 706
Query: 552 IEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLE 593
AD II ++DGK+ ESG + LL K G + ++ + E
Sbjct: 707 PHADQIIVLKDGKIVESGTYEELL--KSGGDFAELAHEEESE 746
>gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 247 bits (632), Expect = 6e-66
Identities = 144/572 (25%), Positives = 252/572 (44%), Gaps = 28/572 (4%)
Query: 30 KHVTWYSMSIVAMITVSLMT----SCSAWIMRDVMNAMVASTDIFHVIVVSSTVAGIFIV 85
+H + IV I L + + S W + +A+ IF+V++ S+ V G+ I+
Sbjct: 13 RHKFGLLLGIVLAILTLLASIGLLTLSGWFI--SASAIAGLAYIFNVMLPSAGVRGLAIL 70
Query: 86 KGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRS 145
+ A +V+ A +++ + +++ +L +S +L R +
Sbjct: 71 RTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLV-------A 123
Query: 146 VVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKRVRHIMEQGM 205
VD +LR V +V++ + LS +I + L L + +L+ + + +
Sbjct: 124 DVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAG 183
Query: 206 VAIGHIIQNLQET--------VIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIES 257
G + + V G + F E+ + K A+
Sbjct: 184 RKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTG 243
Query: 258 ATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRIIL 317
+ I+ I+GL + G++L+ G + + A E + +A
Sbjct: 244 LSDAILLLIAGLLVIGLLLWMA-AQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQH 302
Query: 318 EGGMV-GVRCMFSLLDHPIMIEESPHAVNLPVGKGTTVFRDVFFSY-KQGHPVLSGINLC 375
G ++ R + +LD E + R+V F+Y Q L NL
Sbjct: 303 LGQVIASARRLNDILDQKP--EVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLT 360
Query: 376 FKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQD 435
G+ A++G SGSGKST++ LL +DP GSI ++G+ I + +LRE IS + Q
Sbjct: 361 LAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQR 420
Query: 436 VFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQK 495
V LFS T+R N+ + P A++EE+ + + S P G +T++GE G LSGG++
Sbjct: 421 VHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGER 480
Query: 496 QRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEAD 555
+R+A+ARA+L D + +LDE T LD TE V L +G+T +++ HR+ + D
Sbjct: 481 RRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMD 540
Query: 556 HIIFIEDGKVSESGDQKYLLQQKDGSLYKKMY 587
II +++GK+ E G LL YK++Y
Sbjct: 541 RIIVLDNGKIIEEGTHAELLANNG--RYKRLY 570
>gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like
transporters are involved in drug, peptide, and lipid
export. They belong to the subfamily C of the
ATP-binding cassette (ABC) superfamily of transport
proteins. The ABCC subfamily contains transporters with
a diverse functional spectrum that includes ion
transport, cell surface receptor, and toxin secretion
activities. The MRP-like family, simlar to all ABC
proteins, have a common four-domain core structure
constituted by two membrane-spanning domains, each
composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 171
Score = 230 bits (589), Expect = 8e-61
Identities = 102/212 (48%), Positives = 133/212 (62%), Gaps = 43/212 (20%)
Query: 354 VFRDVFFSYK-QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI 412
F++V FSY + PVL ++L K G+ A+VGPSGSGKST++ LL+R+YDP+SG I I
Sbjct: 2 EFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILI 61
Query: 413 DGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFI 472
DG+++RD+ SLR+ I+YV QD FLFS T+R NI
Sbjct: 62 DGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------- 96
Query: 473 MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL 532
LSGGQ+QRIAIARA+LRD IL+LDEATSALD TE L+ +AL
Sbjct: 97 -----------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL 139
Query: 533 SRLMQGRTTIVIAHRISTIIEADHIIFIEDGK 564
L +G+T IVIAHR+STI +AD II ++DG+
Sbjct: 140 RALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen
Processing; TAP is essential for peptide delivery from
the cytosol into the lumen of the endoplasmic reticulum
(ER), where these peptides are loaded on major
histocompatibility complex (MHC) I molecules. Loaded
MHC I leave the ER and display their antigenic cargo on
the cell surface to cytotoxic T cells. Subsequently,
virus-infected or malignantly transformed cells can be
eliminated. TAP belongs to the large family of
ATP-binding cassette (ABC) transporters, which
translocate a vast variety of solutes across membranes..
Length = 226
Score = 228 bits (583), Expect = 3e-60
Identities = 100/218 (45%), Positives = 140/218 (64%), Gaps = 2/218 (0%)
Query: 350 KGTTVFRDVFFSY--KQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSS 407
KG F++V F+Y + VL ++ G++TALVGPSGSGKST++ LL Y P
Sbjct: 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG 68
Query: 408 GSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSAN 467
G + +DG I L ++S VGQ+ LF+ +++ NI G + E + E A+ A+
Sbjct: 69 GQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAH 128
Query: 468 AHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527
AH FI L GYDT VGE GS LSGGQKQR+AIARA++R+ +L+LDEATSALD +E
Sbjct: 129 AHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 528 VRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKV 565
V+QAL + RT +VIAHR+ST+ AD I+ ++ G++
Sbjct: 189 VQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
>gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy..
Length = 237
Score = 227 bits (579), Expect = 9e-60
Identities = 106/238 (44%), Positives = 149/238 (62%), Gaps = 3/238 (1%)
Query: 354 VFRDVFFSYKQGHP-VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI 412
F V F YK P +L I+L K G++ +VG SGSGKST+ L+ R Y P +G + +
Sbjct: 2 TFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLV 61
Query: 413 DGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFI 472
DG ++ + LR ++ V Q+ LF+ ++R NI + P + E +IE AK A AHDFI
Sbjct: 62 DGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFI 121
Query: 473 MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL 532
LP+GYDT VGE G+ LSGGQ+QRIAIARA++ + IL+ DEATSALD +E+ + + +
Sbjct: 122 SELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNM 181
Query: 533 SRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQ 590
+ GRT I+IAHR+ST+ AD II +E G++ E G LL + LY +Y Q
Sbjct: 182 HDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE--NGLYAYLYQLQ 237
>gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin
exporters. Many non-lantibiotic bacteriocins of lactic
acid bacteria are produced as precursors which have
N-terminal leader peptides that share similarities in
amino acid sequence and contain a conserved processing
site of two glycine residues in positions -1 and -2. A
dedicated ATP-binding cassette (ABC) transporter is
responsible for the proteolytic cleavage of the leader
peptides and subsequent translocation of the
bacteriocins across the cytoplasmic membrane..
Length = 220
Score = 216 bits (552), Expect = 1e-56
Identities = 93/216 (43%), Positives = 139/216 (64%), Gaps = 1/216 (0%)
Query: 355 FRDVFFSYK-QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEID 413
FR+V FSY Q P L ++L ++G+ A++G GSGKST++ LL +Y P+SGS+ +D
Sbjct: 5 FRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLD 64
Query: 414 GINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIM 473
G +IR + + LR I YV QDV LF T+R NI +G P+A +E ++ A+ A DF+
Sbjct: 65 GTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVN 124
Query: 474 SLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALS 533
P G D +GE G LSGGQ+Q +A+ARA+L D IL+LDE TSA+D ++E +++ L
Sbjct: 125 KHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR 184
Query: 534 RLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESG 569
+L+ +T I+I HR S + D II ++ G++ G
Sbjct: 185 QLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
>gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 221
Score = 211 bits (539), Expect = 5e-55
Identities = 90/220 (40%), Positives = 134/220 (60%), Gaps = 2/220 (0%)
Query: 351 GTTVFRDVFFSYKQG-HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGS 409
G F++V Y+ PVL I+ K G+ +VG +GSGKS+++ L R+ + SSGS
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 410 IEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAH 469
I IDG++I I LR RIS + QD LFS T+R N L ++EE+ + +
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSN-LDPFGEYSDEELWQALERVGLK 119
Query: 470 DFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVR 529
+F+ SLP G DT V E G NLS GQ+Q + +ARA+LR ILVLDEAT+++D T+ L++
Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 179
Query: 530 QALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESG 569
+ + + T + IAHR+ TII++D I+ ++ G+V E
Sbjct: 180 KTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFD 219
>gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 200 bits (510), Expect = 1e-51
Identities = 139/564 (24%), Positives = 259/564 (45%), Gaps = 53/564 (9%)
Query: 41 AMITVSLMTSC-------SAWIMRDVMNAMVASTDIFHVIVVSSTVAGIFIVKGIASFVQ 93
A I V L ++ M V + ++ S + +++++ G++ +G+ ++
Sbjct: 24 AFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIR 83
Query: 94 NYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSVVDIFITS 153
+ L G + + ++ S + + ++ + D+
Sbjct: 84 SRVLVRIGERLDRQLNGPVFA-------------ASFSAPLLRRGSGDGLQPLRDL---D 127
Query: 154 FLRDFLTLVGL------------IVVMFLQEPTLSLCTIIIGPLCILGVRILVKRV-RHI 200
+R FLT GL + V+FL P L L + G + ++ + +L +R R
Sbjct: 128 QVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGL-IALAGAIILVVLALLNERATRKP 186
Query: 201 MEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIESATS 260
+++ A Q T+ ++++ M + +R + + A
Sbjct: 187 LKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFG 246
Query: 261 PIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRIILEG- 319
+ + +++ +L G + KG G +++ ++L + +A + +
Sbjct: 247 ALSRALR-MALQSAVLGLGAWLVIKGEITPGMMIA--GSILSG----RALAPIDLAIANW 299
Query: 320 -GMVGVRCMFSLLDHPIMIEESPHA---VNLPVGKGTTVFRDVFFSYKQGH-PVLSGINL 374
V R + L+ ++ E P A + LP +G + + P+L GI+
Sbjct: 300 KQFVAARQSYKRLNE--LLAELPAAAERMPLPAPQGALSVERLTAAPPGQKKPILKGISF 357
Query: 375 CFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQ 434
++G+ ++GPSGSGKST+ LL+ ++ P+SGS+ +DG ++R L I Y+ Q
Sbjct: 358 ALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQ 417
Query: 435 DVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQ 494
DV LF T+ NI A E++IE A+ A H+ I+ LPQGYDT +GE G+ LSGGQ
Sbjct: 418 DVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQ 477
Query: 495 KQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRL-MQGRTTIVIAHRISTIIE 553
+QRIA+ARA+ D ++VLDE S LD+ E + A+ +G T +VIAHR S +
Sbjct: 478 RQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALAS 537
Query: 554 ADHIIFIEDGKVSESGDQKYLLQQ 577
D I+ ++DG+++ G ++ +L +
Sbjct: 538 VDKILVLQDGRIAAFGPREEVLAK 561
>gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminas, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 204
Score = 162 bits (411), Expect = 3e-40
Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 20/217 (9%)
Query: 354 VFRDVFFSYKQG----HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGS 409
D F++ G L INL G++ A+VGP GSGKS++++ L+ + SGS
Sbjct: 2 SVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGS 61
Query: 410 IEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAH 469
+ + G I+YV Q+ ++ + T+R NIL G+P EE ++ K+
Sbjct: 62 VSVPG-------------SIAYVSQEPWIQNGTIRENILFGKPF-DEERYEKVIKACALE 107
Query: 470 DFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTEN-LV 528
+ LP G T +GE G NLSGGQKQRI++ARA+ D I +LD+ SA+D H +
Sbjct: 108 PDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIF 167
Query: 529 RQAL-SRLMQGRTTIVIAHRISTIIEADHIIFIEDGK 564
+ L+ +T I++ H++ + AD I+ +++G+
Sbjct: 168 ENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
>gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They
export degradative enzymes by using a type I protein
secretion system and lack an N-terminal signal peptide,
but contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family
of ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA..
Length = 173
Score = 152 bits (386), Expect = 2e-37
Identities = 72/212 (33%), Positives = 105/212 (49%), Gaps = 44/212 (20%)
Query: 356 RDVFFSYKQG-HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
+V F Y PVL ++ + G+ A++GPSGSGKST+ L++ + P+SG + +DG
Sbjct: 4 ENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDG 63
Query: 415 INIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMS 474
+I + L + + Y+ QD LFS ++ NIL
Sbjct: 64 ADISQWDPNELGDHVGYLPQDDELFSGSIAENIL-------------------------- 97
Query: 475 LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSR 534
SGGQ+QR+ +ARA+ + ILVLDE S LD E + QA++
Sbjct: 98 ----------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAA 141
Query: 535 L-MQGRTTIVIAHRISTIIEADHIIFIEDGKV 565
L G T IVIAHR T+ AD I+ +EDG+V
Sbjct: 142 LKAAGATRIVIAHRPETLASADRILVLEDGRV 173
>gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2. The sulfonylurea receptor
SUR is an ATP binding cassette (ABC) protein of the
ABCC/MRP family. Unlike other ABC proteins, it has no
intrinsic transport function, neither active nor
passive, but associates with the potassium channel
proteins Kir6.1 or Kir6.2 to form the ATP-sensitive
potassium (K(ATP)) channel. Within the channel complex,
SUR serves as a regulatory subunit that fine-tunes the
gating of Kir6.x in response to alterations in cellular
metabolism. It constitutes a major pharmaceutical
target as it binds numerous drugs, K(ATP) channel
openers and blockers, capable of up- or down-regulating
channel activity..
Length = 257
Score = 147 bits (372), Expect = 8e-36
Identities = 81/214 (37%), Positives = 124/214 (57%), Gaps = 1/214 (0%)
Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLR 426
PVL + K G+ + G +GSGKS++ RM D G I IDGI+I + +LR
Sbjct: 35 PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94
Query: 427 ERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGEN 486
R+S + QD LFS ++R+N L T++ + E + A + + SLP G D V E
Sbjct: 95 SRLSIILQDPILFSGSIRFN-LDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEG 153
Query: 487 GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAH 546
G N S GQ+Q +ARA +R IL++DEAT+++D TEN++++ + RT + IAH
Sbjct: 154 GENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAH 213
Query: 547 RISTIIEADHIIFIEDGKVSESGDQKYLLQQKDG 580
R+STI++AD ++ + G + E + LL Q+DG
Sbjct: 214 RVSTILDADLVLVLSRGILVECDTPENLLAQEDG 247
>gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (mulrtidrug
resisitance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminas,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate..
Length = 207
Score = 146 bits (369), Expect = 2e-35
Identities = 72/203 (35%), Positives = 112/203 (55%), Gaps = 19/203 (9%)
Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLR 426
PVL ++ K+G+ +VG +G+GKST+I L R + G IEIDGI+I I LR
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81
Query: 427 ERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGEN 486
++ + QD LFS T+R N+ ++EE+ + V E
Sbjct: 82 SSLTIIPQDPTLFSGTIRSNLDP-FDEYSDEEIYGALR------------------VSEG 122
Query: 487 GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAH 546
G NLS GQ+Q + +ARA+L+ +LVLDEAT+++D T+ L+++ + T + IAH
Sbjct: 123 GLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAH 182
Query: 547 RISTIIEADHIIFIEDGKVSESG 569
R+ TII+ D I+ ++ G+V E
Sbjct: 183 RLRTIIDYDKILVMDAGEVKEYD 205
>gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. This ABC transport system of the CbiMNQO family
is involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most of
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 211
Score = 146 bits (369), Expect = 2e-35
Identities = 74/218 (33%), Positives = 115/218 (52%), Gaps = 14/218 (6%)
Query: 354 VFRDVFFSYKQG-HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI 412
+++ FSY G P L I+L K G+ +VGP+GSGKST++ LL + P+SG + +
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 413 DGINIRDITFSSLRERISYVGQ--DVFLFSNTVRYNILIGRPMA--TEEEMIEIAKSANA 468
DG ++ ++ LR ++ V Q D F TV + G EEE+ E + A
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEA-L 119
Query: 469 HDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528
+ + + LSGGQKQR+AIA + D IL+LDE T+ LD +
Sbjct: 120 ELVGLEGLRDRSPF------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173
Query: 529 RQALSRLM-QGRTTIVIAHRISTIIE-ADHIIFIEDGK 564
+ L +L +G+T I++ H + ++E AD +I +EDGK
Sbjct: 174 LELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
>gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 144 bits (365), Expect = 6e-35
Identities = 71/235 (30%), Positives = 116/235 (49%), Gaps = 15/235 (6%)
Query: 353 TVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI 412
++ F Y L ++L + G+ L+GP+GSGKST++ LL + P+SG + +
Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV 63
Query: 413 DGINIRDITF-SSLRERISYVGQ--DVFLFSNTVRYNILIGRP--MATEEEMIEIAKSAN 467
DG++ LR+++ V Q D LF TV + G EE+ E A
Sbjct: 64 DGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEAL 123
Query: 468 AHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527
++ L + D NLSGGQKQR+AIA + IL+LDE T+ LD
Sbjct: 124 E---LVGLEELLDRPP----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE 176
Query: 528 VRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKD 579
+ + L +L + G+T I++ H + ++E AD ++ ++DGK+ GD + +
Sbjct: 177 LLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDAE 231
>gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 143 bits (362), Expect = 1e-34
Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 20/232 (8%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
R++ Y L G++ + G++ L+GP+G+GK+T++ +L + P+SG I + G
Sbjct: 7 VRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLG 66
Query: 415 INIRDITFSSLRERISYVGQDVFLFSN-TVRYNI-----LIGRPMATEEEMIEIAKSANA 468
++ + +R RI YV Q+ L+ TVR N+ L G EE IE
Sbjct: 67 YDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLE--- 122
Query: 469 HDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528
+ L + V LSGG KQR++IA A+L D +L+LDE TS LD + +
Sbjct: 123 ---LFGLEDKANKKV----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI 175
Query: 529 RQALSRLM-QGRTTIVIAHRISTIIE--ADHIIFIEDGKVSESGDQKYLLQQ 577
+ L L +G TI+++ I E D +I + DGK+ G + L ++
Sbjct: 176 WELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227
>gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 142 bits (361), Expect = 2e-34
Identities = 70/223 (31%), Positives = 117/223 (52%), Gaps = 14/223 (6%)
Query: 355 FRDVFFSYKQGH---PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIE 411
++V Y G L +NL ++G+ A+VGPSGSGKST++NLL + P+SG +
Sbjct: 4 LKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVL 63
Query: 412 IDGINIRDITFSSL----RERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSA 466
I+G ++ ++ L R++I +V Q+ L + TV N+ + +A + +
Sbjct: 64 INGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAE 123
Query: 467 NAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTEN 526
+ + + E LSGGQ+QR+AIARA++ + I++ DE T LD+ T
Sbjct: 124 ELLEVLGLEDRLLKKKPSE----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179
Query: 527 LVRQALSRLMQ--GRTTIVIAHRISTIIEADHIIFIEDGKVSE 567
V + L L + G+T I++ H AD +I ++DGK+ E
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
>gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in
cytochrome bd biogenesis. The CydC and CydD proteins
are important for the formation of cytochrome bd
terminal oxidase of E. coli and it has been proposed
that they were necessary for biosynthesis of the
cytochrome bd quinol oxidase and for periplasmic c-type
cytochromes. CydCD were proposed to determine a
heterooligomeric complex important for heme export into
the periplasm or to be involved in the maintenance of
the proper redox state of the periplasmic space. In
Bacillus subtilius, the absence of CydCD does not affect
the presence of halo-cytochrome c in the membrane and
this observation suggests that CydCD proteins are not
involved in the export of heme in this organism..
Length = 178
Score = 140 bits (354), Expect = 1e-33
Identities = 69/217 (31%), Positives = 105/217 (48%), Gaps = 41/217 (18%)
Query: 354 VFRDVFFSYK-QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI 412
+V FSY Q VL ++L K G+ AL+G SGSGKST++ LL P G I +
Sbjct: 2 SINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITL 61
Query: 413 DGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFI 472
DG+ + D+ +L IS + Q +LF T+R N+
Sbjct: 62 DGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL------------------------- 95
Query: 473 MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL 532
G SGG++QR+A+AR +L+D I++LDE T LD TE + +
Sbjct: 96 --------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI 141
Query: 533 SRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESG 569
+++ +T I I H ++ I D I+F+E+GK+ G
Sbjct: 142 FEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
>gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 139 bits (353), Expect = 2e-33
Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 17/224 (7%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
+++ S+ VL GI+L + G++ ++GPSGSGKST++ L + +P SGSI +DG
Sbjct: 5 IKNLSKSFGDKE-VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDG 63
Query: 415 INI-RDITFSSLRERISYVGQDVFLFSN-TVRYNILIGRPMAT----EEEMIEIAKSANA 468
++ LR ++ V Q LF + TV N+ + P+ + E E A
Sbjct: 64 EDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA-PVKVKKLSKAEAREKALELLE 122
Query: 469 HDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528
+ L D Y + LSGGQ+QR+AIARA+ D +++ DE TSALD V
Sbjct: 123 K---VGLADKADAYPAQ----LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEV 175
Query: 529 RQALSRLM-QGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570
+ L +G T I++ H + E AD +IF++ GK+ E G
Sbjct: 176 LDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGP 219
>gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796
ATP-binding cassette, macrolide-specific ABC-type efflux
carrier (MacAB), and proteins involved in cell division
(FtsE), and release of liporoteins from the cytoplasmic
membrane (LolCDE). They are clustered together
phylogenetically. MacAB is an exporter that confers
resistance to macrolides, while the LolCDE system is not
a transporter at all. An FtsE null mutants showed
filamentous growth and appeared viable on high salt
medium only, indicating a role for FtsE in cell division
and/or salt transport. The LolCDE complex catalyses the
release of lipoproteins from the cytoplasmic membrane
prior to their targeting to the outer membrane..
Length = 218
Score = 137 bits (348), Expect = 6e-33
Identities = 74/223 (33%), Positives = 113/223 (50%), Gaps = 19/223 (8%)
Query: 355 FRDVFFSYKQG---HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIE 411
+++ +Y G L G++L + G+ A+VGPSGSGKST++N+L + P+SG +
Sbjct: 3 LKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVR 62
Query: 412 IDGINIRDITFSSL----RERISYVGQDVFLFSN-TVRYNILIGRPMATE--EEMIEIAK 464
+DG +I ++ L R I +V Q L + T N+ + +A +E E A+
Sbjct: 63 VDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAE 122
Query: 465 SANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHT 524
+ L + Y E LSGGQ+QR+AIARA+ D I++ DE T LD+ T
Sbjct: 123 ELLER---VGLGDRLNHYPSE----LSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175
Query: 525 ENLVRQALSRL--MQGRTTIVIAHRISTIIEADHIIFIEDGKV 565
V + L L G T +V+ H AD II + DGK+
Sbjct: 176 GKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
>gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 137 bits (347), Expect = 8e-33
Identities = 72/237 (30%), Positives = 121/237 (51%), Gaps = 26/237 (10%)
Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI 415
++ F Y G P+L ++ G++T ++GP+GSGKST++ L + P SG + +DG
Sbjct: 6 ENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGK 64
Query: 416 NIRDITFSSLRERISYVGQD-VFLFSNTVRYNILIGR----------PMATEEEMIEIAK 464
+I ++ L ++++YV Q F TV +L+GR EE + E +
Sbjct: 65 DIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALE 124
Query: 465 SANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHT 524
D V E LSGG++QR+ IARA+ ++ IL+LDE TS LD
Sbjct: 125 LLGLEHLA-------DRPVDE----LSGGERQRVLIARALAQETPILLLDEPTSHLDIAH 173
Query: 525 ENLVRQALSRLM--QGRTTIVIAHRIS-TIIEADHIIFIEDGKVSESGDQKYLLQQK 578
+ V + L L +G T +++ H ++ ADH+I ++DGK+ G + +L ++
Sbjct: 174 QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEE 230
>gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding
component of a bacterial solute transporter that serves
a protective role to cells growing in a hyperosmolar
environment. ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 242
Score = 137 bits (346), Expect = 1e-32
Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 7/225 (3%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
F +V Y G ++ +NL G+ L+GPSGSGK+T + ++ R+ +P+SG I IDG
Sbjct: 3 FENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDG 62
Query: 415 INIRDITFSSLRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIM 473
+IR+ LR +I YV Q + LF + TV NI + P + +I + A+ ++
Sbjct: 63 EDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIAL-VPKLLKWPKEKIRERADELLALV 121
Query: 474 SLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALS 533
L + LSGGQ+QR+ +ARA+ D +L++DE ALD T + +++
Sbjct: 122 GLDPA--EFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFK 179
Query: 534 RLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLL 575
RL Q G+T + + H I AD I +++G++ + G +L
Sbjct: 180 RLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
>gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding
Protein Dependent) systems that are largely represented
in archaea and eubacteria and are primarily involved in
scavenging solutes from the environment. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 178
Score = 134 bits (340), Expect = 5e-32
Identities = 75/216 (34%), Positives = 108/216 (50%), Gaps = 46/216 (21%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
++V Y Q VL+ ++L ++G++ AL+GPSGSGKST++ + + +P SGSI IDG
Sbjct: 3 LKNVSKRYGQ-KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDG 61
Query: 415 INIRDITFSS--LRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDF 471
++ D+ LR RI V QD LF + TV NI +G
Sbjct: 62 EDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG--------------------- 100
Query: 472 IMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQA 531
LSGGQ+QR+A+ARA+ D +L+LDE TSALD T VR
Sbjct: 101 ------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRAL 142
Query: 532 LSRL--MQGRTTIVIAHRISTIIE-ADHIIFIEDGK 564
L L G T +++ H + AD ++ + DGK
Sbjct: 143 LKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
>gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute
Transporters-like subgroup. This family is comprised of
proteins involved in the transport of apparently
unrelated solutes and proteins specific for di- and
oligosaccharides and polyols. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 213
Score = 134 bits (339), Expect = 7e-32
Identities = 72/212 (33%), Positives = 105/212 (49%), Gaps = 15/212 (7%)
Query: 364 QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFS 423
L ++L + G+ AL+GPSG GK+T++ L+ + P SG I IDG RD+T
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDG---RDVTGV 67
Query: 424 SLRER-ISYVGQDVFLFSN-TVRYNILIG-RPMATEEEMIEIAKSANAHDFIMSLPQGYD 480
R I V QD LF + TV NI G + + I ++ L +
Sbjct: 68 PPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL--ELVGLEGLLN 125
Query: 481 TYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM--QG 538
Y E LSGGQ+QR+A+ARA+ R+ +L+LDE SALD +R+ L L G
Sbjct: 126 RYPHE----LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELG 181
Query: 539 RTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569
TTI + H + AD I + +G++ + G
Sbjct: 182 ITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
>gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of
fundamental importance in the cell physiology of
bacteria because phosphate is required as a nutrient.
The Pst system of E. coli comprises four distinct
subunits encoded by the pstS, pstA, pstB, and pstC
genes. The PstS protein is a phosphate-binding protein
located in the periplasmic space. P stA and PstC are
hydrophobic and they form the transmembrane portion of
the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD)..
Length = 227
Score = 134 bits (338), Expect = 9e-32
Identities = 70/229 (30%), Positives = 113/229 (49%), Gaps = 21/229 (9%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD-----PSSGS 409
RD+ Y H L I+L G++TAL+GPSG GKST++ LL R+ D P G
Sbjct: 3 LRDLNVYYGDKH-ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGE 61
Query: 410 IEIDGINIR--DITFSSLRERISYVGQDVFLFSNTVRYNILIG---RPMATEEEMIEIAK 464
+ +DG +I D+ LR R+ V Q F ++ N+ G + +EE+ E +
Sbjct: 62 VLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVE 121
Query: 465 SANAHDFIMSLPQGYDTYVGE--NGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDT 522
A V + + LSGGQ+QR+ +ARA+ + +L+LDE TSALD
Sbjct: 122 EALRKA-------ALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDP 174
Query: 523 HTENLVRQALSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570
+ + + ++ L + T +++ H + AD F+ +G++ E G
Sbjct: 175 ISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223
>gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 132 bits (334), Expect = 2e-31
Identities = 68/225 (30%), Positives = 110/225 (48%), Gaps = 11/225 (4%)
Query: 349 GKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSG 408
K R+V S+ + I+L K G+ L+GPSG GK+T++ ++ PSSG
Sbjct: 2 PKPALEIRNVSKSF-GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 409 SIEIDGINIRDITFSSLRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSAN 467
I +DG +I D+ + I V Q LF + TV N+ G + + + EI
Sbjct: 61 EILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118
Query: 468 AHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527
++ L D + LSGGQ+QR+A+ARA++ + +L+LDE SALD
Sbjct: 119 EALELVGLEGFADRKPHQ----LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQ 174
Query: 528 VRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569
+R+ L L + G T + + H + +D I + DG++ + G
Sbjct: 175 MRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVG 219
>gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC)
is an ABC-type transporter encoded by metN of the metNPQ
operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate
binding protein. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 233
Score = 131 bits (331), Expect = 6e-31
Identities = 68/225 (30%), Positives = 112/225 (49%), Gaps = 12/225 (5%)
Query: 358 VFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINI 417
VF L ++L G++ ++G SG+GKST+I + + P+SGS+ +DG ++
Sbjct: 10 VFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDL 69
Query: 418 RDITFSSLRE---RISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIM 473
++ LR+ RI + Q L S+ TV N+ + +A EI + ++
Sbjct: 70 TLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA-GVPKAEIEERVLELLELV 128
Query: 474 SLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALS 533
L D Y + LSGGQKQR+ IARA+ + +L+ DEATSALD T + L
Sbjct: 129 GLEDKADAYP----AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLR 184
Query: 534 RLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLL 575
+ + G T ++I H + + D + +E G+V E G + +
Sbjct: 185 DINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229
>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 157
Score = 130 bits (329), Expect = 9e-31
Identities = 66/212 (31%), Positives = 98/212 (46%), Gaps = 58/212 (27%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
++ F Y G L ++L K+G++ ALVGP+GSGKST++ + + P+SG I IDG
Sbjct: 2 IENLSFRYG-GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60
Query: 415 INIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMS 474
+I + LR RI Y
Sbjct: 61 KDIAKLPLEELRRRIGY------------------------------------------- 77
Query: 475 LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSR 534
+PQ LSGGQ+QR+A+ARA+L + +L+LDE TS LD + + + L
Sbjct: 78 VPQ------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE 125
Query: 535 LMQ-GRTTIVIAHRISTIIEA-DHIIFIEDGK 564
L + GRT I++ H A D +I ++DGK
Sbjct: 126 LAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
>gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette)
transport system involved in resistant to organic
solvents; ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 129 bits (327), Expect = 2e-30
Identities = 74/232 (31%), Positives = 116/232 (50%), Gaps = 12/232 (5%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
R + S+ G VL G++L + G++ A++GPSGSGKST++ L++ + P SG + IDG
Sbjct: 3 LRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDG 61
Query: 415 INIRDITFS---SLRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHD 470
+I ++ + LR R+ + Q LF + TV N+ T EI +
Sbjct: 62 EDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKL 121
Query: 471 FIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQ 530
+ L D Y E LSGG K+R+A+ARA+ D +L+ DE T+ LD ++
Sbjct: 122 EAVGLRGAEDLYPAE----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDD 177
Query: 531 ALSRL--MQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKD 579
+ L G T+I++ H + T AD I + DGK+ G + L D
Sbjct: 178 LIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDD 229
>gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 129 bits (325), Expect = 2e-30
Identities = 64/221 (28%), Positives = 107/221 (48%), Gaps = 30/221 (13%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
++ SY PVL I+L + G++TAL+GP+G+GKST++ ++ + PSSG I+I G
Sbjct: 7 VENLTVSY-GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFG 65
Query: 415 INIRDITFSSLRERISYVGQ-------------DVFLFSNTVRYNILIGRPMATEEEMIE 461
+R R RI YV Q DV L + +E++ E
Sbjct: 66 KPVRKR---RKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDE 122
Query: 462 IAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD 521
+ D D +GE LSGGQKQR+ +ARA+ ++ +L+LDE + +D
Sbjct: 123 ALERVGMEDLR-------DRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVD 171
Query: 522 THTENLVRQALSRL-MQGRTTIVIAHRISTIIE-ADHIIFI 560
+ + L L +G+T +++ H + ++ D +I +
Sbjct: 172 VAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL 212
>gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding
components of the bacterial periplasmic histidine and
glutamine permeases, repectively. Histidine permease is
a multisubunit complex containing the HisQ and HisM
integral membrane subunits and two copies of HisP. HisP
has properties intermediate between those of integral
and peripheral membrane proteins and is accessible from
both sides of the membrane, presumably by its
interaction with HisQ and HisM. The two HisP subunits
form a homodimer within the complex. The domain
structure of the amino acid uptake systems is typical
for prokaryote extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein..
Length = 213
Score = 128 bits (324), Expect = 4e-30
Identities = 72/210 (34%), Positives = 113/210 (53%), Gaps = 17/210 (8%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINI--RDITF 422
VL GI+L K G++ ++GPSGSGKST++ + + +P SG+I IDG+ +
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 423 SSLRERISYVGQDVFLFSN-TVRYNILIGRPM----ATEEEMIEIAKSANAHDFIMSLPQ 477
+ LR+++ V Q LF + TV NI + P+ ++ E E A + L
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITLA-PIKVKGMSKAEAEERALELLEK---VGLAD 127
Query: 478 GYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ 537
D Y + LSGGQ+QR+AIARA+ + +++ DE TSALD V + L +
Sbjct: 128 KADAYPAQ----LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE 183
Query: 538 -GRTTIVIAHRISTIIE-ADHIIFIEDGKV 565
G T +V+ H + E AD +IF++DG++
Sbjct: 184 EGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
>gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 128 bits (323), Expect = 5e-30
Identities = 72/228 (31%), Positives = 120/228 (52%), Gaps = 10/228 (4%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
F +V Y + +NL + G+ L+GPSGSGK+T + ++ R+ +P+SG I IDG
Sbjct: 4 FENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDG 62
Query: 415 INIRDITFSSLRERISYVGQDVFLFSN-TVRYNI-LIGRPMATEEEMIEIAKSANAHDFI 472
+I D+ LR +I YV Q + LF + TV NI + + + ++E I K A+ +
Sbjct: 63 EDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKE--RIKKRADELLDL 120
Query: 473 MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL 532
+ L Y LSGGQ+QR+ +ARA+ D IL++DE ALD T +++ +
Sbjct: 121 VGLDPS--EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEI 178
Query: 533 SRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQ 577
L + G+T + + H I ++ AD I ++ G++ + +L
Sbjct: 179 KELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
>gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters,
involved in the uptake of siderophores, heme, and
vitamin B12, are widely conserved in bacteria and
archaea. Only very few species lack representatives of
the siderophore family transporters. The E. coli BtuCD
protein is an ABC transporter mediating vitamin B12
uptake. The two ATP-binding cassettes (BtuD) are in
close contact with each other, as are the two
membrane-spanning subunits (BtuC); this arrangement is
distinct from that observed for the E. coli lipid
flippase MsbA. The BtuC subunits provide 20
transmembrane helices grouped around a translocation
pathway that is closed to the cytoplasm by a gate
region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters..
Length = 180
Score = 126 bits (319), Expect = 1e-29
Identities = 56/217 (25%), Positives = 105/217 (48%), Gaps = 42/217 (19%)
Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI 415
++ Y G VL ++L ++G++ ++GP+G+GKST++ L + PSSG I +DG
Sbjct: 3 ENLSVGY-GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK 61
Query: 416 NIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSL 475
++ ++ L +I+YV Q +
Sbjct: 62 DLASLSPKELARKIAYVPQ---------------------------ALELLGLAHL---A 91
Query: 476 PQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRL 535
+ ++ LSGG++QR+ +ARA+ ++ IL+LDE TS LD + + + L RL
Sbjct: 92 DRPFNE--------LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRL 143
Query: 536 MQ--GRTTIVIAHRIS-TIIEADHIIFIEDGKVSESG 569
+ G+T +++ H ++ AD +I ++DG++ G
Sbjct: 144 ARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
>gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 126 bits (317), Expect = 2e-29
Identities = 66/215 (30%), Positives = 106/215 (49%), Gaps = 19/215 (8%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
V S+ G VL INL + G+ A++GPSG GKST++ L+ + P+SG + +DG
Sbjct: 6 IEGVSKSF-GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDG 64
Query: 415 INIRDITFSSLRERISYVGQDVFLFS-NTVRYNILIGRPMA--TEEEMIEIAKSANAHDF 471
+ I YV Q+ L TV N+ +G + ++ E E AK
Sbjct: 65 RPVTGP-----GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLE--- 116
Query: 472 IMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQA 531
++ L D Y + LSGG +QR+AIARA+ +L+LDE ALD T ++
Sbjct: 117 LVGLAGFEDKYPHQ----LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDE 172
Query: 532 LSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDG 563
L RL + +T +++ H + + AD ++ + +
Sbjct: 173 LLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207
>gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 124 bits (312), Expect = 8e-29
Identities = 73/237 (30%), Positives = 120/237 (50%), Gaps = 26/237 (10%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
++V S+ VL +NL + G+ L+GPSG GKST++ ++ + +P+SG I IDG
Sbjct: 6 LKNVRKSFG-SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDG 64
Query: 415 INIRDITFSSLRER-ISYVGQDVFLFSN-TVRYNILIGRPMA------TEEEMIEIAKSA 466
RD+T +R I+ V Q+ L+ + TV NI G + ++ + E+AK
Sbjct: 65 ---RDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLL 121
Query: 467 NAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTEN 526
+ P LSGGQ+QR+A+ARA++R + +LDE S LD
Sbjct: 122 GLEHLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRV 170
Query: 527 LVRQALSRLMQ--GRTTIVIAHR-ISTIIEADHIIFIEDGKVSESGDQKYLLQQKDG 580
L+R + +L + G TTI + H + + AD I+ + DG++ + G L ++
Sbjct: 171 LMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227
>gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate
transport system. Phosphonates are a class of
organophosphorus compounds characterized by a chemically
stable carbon-to-phosphorus (C-P) bond. Phosphonates
are widespread among naturally occurring compounds in
all kingdoms of wildlife, but only procaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 241
Score = 124 bits (313), Expect = 8e-29
Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 28/230 (12%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
++ +Y G L ++L G+ AL+GPSG+GKST++ L + +P+SGS+ IDG
Sbjct: 3 VENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDG 62
Query: 415 INIRDITFSSLRE---RISYVGQDVFLFSN-TVRYNILIGR-----------PMATEEEM 459
+I + +LR+ +I + Q L +V N+L GR + +EE
Sbjct: 63 TDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE- 121
Query: 460 IEIAKSANAHDFIMSLPQ-GYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATS 518
+ A +A L + G + LSGGQ+QR+AIARA+++ +++ DE +
Sbjct: 122 KQRALAA--------LERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVA 173
Query: 519 ALDTHTENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKV 565
+LD + V L R+ + G T IV H++ E AD I+ ++DG++
Sbjct: 174 SLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRI 223
>gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 124 bits (312), Expect = 8e-29
Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 26/232 (11%)
Query: 355 FRDVFFSYKQG----HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSI 410
+V ++ Q L ++L G++ ++G SG+GKST++ L+ + P+SGS+
Sbjct: 4 LENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63
Query: 411 EIDGINIRDITFSSLRE---RISYVGQDVFLFSN-TVRYNI-----LIGRPMATEEEMIE 461
+DG ++ ++ + LR+ +I + Q L S+ TV N+ L G P A E
Sbjct: 64 FVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKA------E 117
Query: 462 IAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD 521
I + ++ L D Y + LSGGQKQR+AIARA+ + IL+ DEATSALD
Sbjct: 118 IKQRVAELLELVGLSDKADRYP----AQLSGGQKQRVAIARALANNPKILLCDEATSALD 173
Query: 522 THTENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570
T + + L + + G T ++I H + + D + ++ G++ E G
Sbjct: 174 PETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225
>gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type
transporters. This family includes transporters
involved in the uptake of various metallic cations such
as iron, manganese, and zinc. The ATPases of this group
of transporters are very similar to members of
iron-siderophore uptake family suggesting that they
share a common ancestor. The best characterized
metal-type ABC transporters are the YfeABCD system of Y.
pestis, the SitABCD system of Salmonella enterica
serovar Typhimurium, and the SitABCD transporter of
Shigella flexneri. Moreover other uncharacterized
homologs of these metal-type transporters are mainly
found in pathogens like Haemophilus or enteroinvasive E.
coli isolates..
Length = 213
Score = 124 bits (312), Expect = 8e-29
Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 27/227 (11%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
D+ SY GHPVL ++ K G+ A+VGP+G+GKST++ ++ + P+SGSI + G
Sbjct: 2 VEDLTVSY-GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60
Query: 415 INIRDITFSSLRERISYVGQ----------DVFLFSNTVRYNILIGRPMATEEEMIEIAK 464
+ R+RI YV Q V Y ++ + AK
Sbjct: 61 KPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADK---AK 112
Query: 465 SANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHT 524
A + + G LSGGQ+QR+ +ARA+++D +L+LDE + +D T
Sbjct: 113 VDEALERV-----GLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKT 167
Query: 525 ENLVRQALSRL-MQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569
+ + + L L +G T +V+ H + ++E D ++ + + V SG
Sbjct: 168 QEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL-NRTVVASG 213
>gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 123 bits (311), Expect = 1e-28
Identities = 72/234 (30%), Positives = 113/234 (48%), Gaps = 17/234 (7%)
Query: 348 VGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSS 407
+ K + +F + + ++ + G+ LVG SGSGKST+ +L + PSS
Sbjct: 286 LSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSS 345
Query: 408 GSIEIDG--INIRDITFSSLRERISYVGQDVFLFSN---TVRYNILIGRPMATEEEMIEI 462
GSI DG +++ LR RI V QD + N TV ++ P+
Sbjct: 346 GSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGD--ILAEPLRIHGGGSGA 403
Query: 463 AKSANAHDFI--MSLPQGY-DTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSA 519
+ A + + + LP + D Y E LSGGQ+QR+AIARA+ + +L+LDE SA
Sbjct: 404 ERRARVAELLELVGLPPEFLDRYPHE----LSGGQRQRVAIARALALEPKLLILDEPVSA 459
Query: 520 LDTHTENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570
LD + V L L + G T + I+H ++ + AD + + DG++ E G
Sbjct: 460 LDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGP 513
Score = 114 bits (287), Expect = 7e-26
Identities = 60/240 (25%), Positives = 111/240 (46%), Gaps = 30/240 (12%)
Query: 359 FFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDP----SSGSIEIDG 414
F + P + ++ + G++ +VG SGSGKST+ LM + +SG + +DG
Sbjct: 15 FATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDG 74
Query: 415 INIRDITFSSLRE----RISYVGQD-------VFLFSNTVRYNILIGRPMATEE---EMI 460
++ ++ +R+ RI+ + QD V + +R + + + E +
Sbjct: 75 RDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAV 134
Query: 461 EIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSAL 520
E+ + D P+ D Y + LSGG +QR+ IA A+ +L+ DE T+AL
Sbjct: 135 ELLEQVGLPD-----PERRDRYPHQ----LSGGMRQRVMIAMALALKPKLLIADEPTTAL 185
Query: 521 DTHTENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQ 577
D T+ + L L + G + I H + + E AD ++ + G++ E+G + +L
Sbjct: 186 DVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245
>gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 123 bits (310), Expect = 1e-28
Identities = 67/210 (31%), Positives = 112/210 (53%), Gaps = 10/210 (4%)
Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLR 426
L I+L KSG++ AL+GPSG+GKST++ ++ + P +G I ++G + D++ ++R
Sbjct: 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR 75
Query: 427 ER-ISYVGQDVFLFSN-TVRYNILIG-RPMATEEEMIEIAKSANAHDFIMSLPQGYDTYV 483
+R + +V Q LF + TV NI G + EI ++ L D Y
Sbjct: 76 DRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP 135
Query: 484 GENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--GRTT 541
+ LSGGQ+QR+A+ARA+ + +L+LDE ALD +R+ L +L G TT
Sbjct: 136 ----AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTT 191
Query: 542 IVIAHRISTIIE-ADHIIFIEDGKVSESGD 570
+ + H +E AD ++ + G++ + G
Sbjct: 192 VFVTHDQEEALELADRVVVLNQGRIEQVGP 221
>gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. The CbiMNQO family ABC transport system is
involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 205
Score = 123 bits (309), Expect = 2e-28
Identities = 68/215 (31%), Positives = 110/215 (51%), Gaps = 20/215 (9%)
Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGIN 416
++ FSYK+G +L ++L +G++ AL G +G+GK+T+ +L + SSGSI ++G
Sbjct: 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG-- 61
Query: 417 IRDITFSSLRERISYVGQDV--FLFSNTVRYNILIGRPMATEEEMI--EIAKSANAHDFI 472
+ I R+ I YV QDV LF+++VR +L+G + K + +
Sbjct: 62 -KPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALK 120
Query: 473 MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL 532
P +LSGGQKQR+AIA A+L +L+ DE TS LD V + +
Sbjct: 121 ERHPL-----------SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELI 169
Query: 533 SRLM-QGRTTIVIAHRISTIIE-ADHIIFIEDGKV 565
L QG+ IVI H + + D ++ + +G +
Sbjct: 170 RELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
>gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins
belongs to a multisubunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea,
these transporters usually include an ATP-binding
protein and one or two integral membrane proteins.
Eukaryote systems of the ABCA subfamily display ABC
domains that are quite similar to this family. The
ATP-binding domain shows the highest similarity between
all members of the ABC transporter family. ABC
transporters are a subset of nucleotide hydrolases that
contain a signature motif, Q-loop, and H-loop/switch
region, in addition to, the Walker A motif/P-loop and
Walker B motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins..
Length = 173
Score = 122 bits (309), Expect = 2e-28
Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 46/213 (21%)
Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI 415
R++ Y L I+L + G++ L+GP+G+GK+T+I +++ + P SG I++ G
Sbjct: 4 RNLSKRYG-KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGK 62
Query: 416 NIRDITFSSLRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMS 474
+I+ ++ RI Y+ ++ L+ N TVR N+
Sbjct: 63 DIKK-EPEEVKRRIGYLPEEPSLYENLTVRENL--------------------------- 94
Query: 475 LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSR 534
LSGG KQR+A+A+A+L D +L+LDE TS LD + + L
Sbjct: 95 --------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRE 140
Query: 535 LMQGRTTIVIAHRISTIIE--ADHIIFIEDGKV 565
L + TI+++ I E D + + +G++
Sbjct: 141 LKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
>gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily
specific for the transport of dipeptides, oligopeptides
(OppD), and nickel (NikDE). The NikABCDE system of E.
coli belongs to this family and is composed of the
periplasmic binding protein NikA, two integral membrane
components (NikB and NikC), and two ATPase (NikD and
NikE). The NikABCDE transporter is synthesized under
anaerobic conditions to meet the increased demand for
nickel resulting from hydrogenase synthesis. The
molecular mechanism of nickel uptake in many bacteria
and most archaea is not known. Many other members of
this ABC family are also involved in the uptake of
dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF..
Length = 228
Score = 122 bits (308), Expect = 3e-28
Identities = 66/223 (29%), Positives = 105/223 (47%), Gaps = 17/223 (7%)
Query: 359 FFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIR 418
F + L ++ K G+ LVG SGSGKST+ ++ + P+SGSI DG ++
Sbjct: 11 FPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLL 70
Query: 419 DIT---FSSLRERISYVGQDVFLFSN---TVRYNI---LIGRPMATEEEMIEIAKSANAH 469
++ R+ I V QD N T+ I L +++E + A
Sbjct: 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLV 130
Query: 470 DFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVR 529
+ + + Y E LSGGQ+QR+AIARA+ + +L+ DE TSALD + +
Sbjct: 131 GVGLP-EEVLNRYPHE----LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQIL 185
Query: 530 QALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569
L +L + G T + I H + + + AD + + GK+ E G
Sbjct: 186 DLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
>gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 122 bits (307), Expect = 3e-28
Identities = 76/219 (34%), Positives = 112/219 (51%), Gaps = 23/219 (10%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424
G L G++L + G++ AL+G +G+GKST++ +L +Y P SG I IDG + + FSS
Sbjct: 20 GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDG---KPVAFSS 76
Query: 425 LRER----ISYVGQDVFLFSN-TVRYNILIGRPMAT------EEEMIEIAKSANAHDFIM 473
R+ I+ V Q++ L N +V NI +GR + M A+ A +
Sbjct: 77 PRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD 136
Query: 474 SLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTH-TENLVRQAL 532
P DT VG +LS Q+Q + IARA+ D +L+LDE T+AL TE L
Sbjct: 137 IDP---DTLVG----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIR 189
Query: 533 SRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570
QG I I+HR+ + E AD I + DG+V +
Sbjct: 190 RLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228
Score = 68.6 bits (168), Expect = 5e-12
Identities = 47/216 (21%), Positives = 102/216 (47%), Gaps = 20/216 (9%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG--INIRDITF 422
G + ++ ++G++ + G G+G++ + L SSG I +DG + IR
Sbjct: 271 GGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRD 330
Query: 423 SSLRERISYVGQD-----VFLFSNTVRYNILIG--RPMATEEEMIEIAKSANAHDFIMSL 475
+ ++ I+YV +D + L ++ NI + R + + + A A +I L
Sbjct: 331 A-IKAGIAYVPEDRKSEGLVL-DMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRL 388
Query: 476 ---PQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL 532
+ +G LSGG +Q++ +AR + D +L+LDE T +D + + + +
Sbjct: 389 RIKTPSPEQPIG----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLI 444
Query: 533 SRLM-QGRTTIVIAHRISTIIE-ADHIIFIEDGKVS 566
L +G+ ++I+ + ++ +D I+ + +G++
Sbjct: 445 RELAAEGKAILMISSELPELLGLSDRILVMREGRIV 480
>gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the
ATP-binding subunits of the bacterial ABC-type nitrate
and sulfonate transport systems, respectively. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 220
Score = 120 bits (303), Expect = 1e-27
Identities = 60/211 (28%), Positives = 101/211 (47%), Gaps = 17/211 (8%)
Query: 355 FRDVFFSYKQG---HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIE 411
R+V +Y G L I+L + G+ ALVGPSG GKST++ ++ + P+SG +
Sbjct: 3 VRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVL 62
Query: 412 IDGINIRDITFSSLRERISYVGQDVFLFS-NTVRYNILIGRPMATEEEMIEIAKSANAHD 470
+DG + YV Q L TV N+ +G + + ++ +
Sbjct: 63 VDGEPVTGP-----GPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLE 117
Query: 471 FIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQ 530
+ G + LSGG +QR+A+ARA+ D +L+LDE SALD T +++
Sbjct: 118 LV-----GLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQE 172
Query: 531 ALSRLMQ--GRTTIVIAHRIS-TIIEADHII 558
L + + G+T +++ H I + AD ++
Sbjct: 173 ELLDIWRETGKTVLLVTHDIDEAVFLADRVV 203
>gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface of
many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself is
required to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2..
Length = 275
Score = 120 bits (301), Expect = 2e-27
Identities = 70/231 (30%), Positives = 120/231 (51%), Gaps = 7/231 (3%)
Query: 351 GTTVFRDVFFSYKQ-GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGS 409
G +D+ Y + G+ VL I+ G+ L+G +GSGKST+++ +R+ + + G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59
Query: 410 IEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMA--TEEEMIEIAKSAN 467
I+IDG++ + R+ + Q VF+FS T R N+ P ++EE+ ++A+
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNL---DPYGKWSDEEIWKVAEEVG 116
Query: 468 AHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527
I P D + + G LS G KQ + +AR++L IL+LDE ++ LD T +
Sbjct: 117 LKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176
Query: 528 VRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQK 578
+R+ L + T I+ HRI ++E + IE+ KV + + LL +K
Sbjct: 177 IRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEK 227
>gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 119 bits (299), Expect = 3e-27
Identities = 74/243 (30%), Positives = 120/243 (49%), Gaps = 33/243 (13%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
R V S+ +L G++L G++ A++G SGSGKST++ L++ + P G I IDG
Sbjct: 11 VRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDG 69
Query: 415 INIRDIT---FSSLRERISYVGQDVFLFSN-TVRYNILIGRPMA-----TEEEMIEIAKS 465
+I ++ +R+R+ + Q LFS+ TV N + P+ E + E+
Sbjct: 70 EDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFEN--VAFPLREHTKLPESLIRELV-- 125
Query: 466 ANAHDFIMSL------PQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSA 519
+M L D Y E LSGG ++R+A+ARA+ D +L LDE TS
Sbjct: 126 ------LMKLELVGLRGAAADLYPSE----LSGGMRKRVALARAIALDPELLFLDEPTSG 175
Query: 520 LDTHTENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQ 576
LD + ++ + + L G T I++ H + +++ AD + + DGKV G + LL
Sbjct: 176 LDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235
Query: 577 QKD 579
D
Sbjct: 236 SDD 238
>gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1. The sulfonylurea receptor
SUR is an ATP transporter of the ABCC/MRP family with
tandem ATPase binding domains. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity..
Length = 218
Score = 117 bits (294), Expect = 9e-27
Identities = 68/212 (32%), Positives = 119/212 (56%), Gaps = 8/212 (3%)
Query: 359 FFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIR 418
+FS+ G LS IN+ +G++T +VG G GKS+++ ++ G + N
Sbjct: 7 YFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNES 66
Query: 419 DITFSSLRER----ISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMS 474
+ +F + R R ++Y Q +L + TV NI G P ++ + + + I
Sbjct: 67 EPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPF-NKQRYKAVTDACSLQPDIDL 125
Query: 475 LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTH-TENLVRQALS 533
LP G T +GE G NLSGGQ+QRI +ARA+ ++ +I+ LD+ SALD H +++L+++ +
Sbjct: 126 LPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGIL 185
Query: 534 RLMQG--RTTIVIAHRISTIIEADHIIFIEDG 563
+ +Q RT +++ H++ + AD II ++DG
Sbjct: 186 KFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
>gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 117 bits (294), Expect = 1e-26
Identities = 74/258 (28%), Positives = 124/258 (48%), Gaps = 26/258 (10%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
+++ +Y GH L +NL G+M A++GPSG+GKST++ L + DP+SG I +G
Sbjct: 6 VKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNG 65
Query: 415 INIRDITFSSLRE---RISYVGQDVFLFSN-TVRYNILIGR-----------PMATEEEM 459
+ I + LR+ I + Q L +V N+L+GR + ++E+
Sbjct: 66 VQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKED- 124
Query: 460 IEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSA 519
A A D + + G + S LSGGQ+QR+AIARA+++ I++ DE ++
Sbjct: 125 -----KAQALDALERV--GILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVAS 177
Query: 520 LDTHTENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQ 576
LD + V L + Q G T IV H++ + AD II ++ G++ G L
Sbjct: 178 LDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD 237
Query: 577 QKDGSLYKKMYASQLLEN 594
+ +Y + +
Sbjct: 238 EALDEIYGNEISEDINRG 255
>gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The
complex is composed of two ATP-binding proteins (cysA),
two transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 239
Score = 116 bits (293), Expect = 1e-26
Identities = 68/211 (32%), Positives = 109/211 (51%), Gaps = 15/211 (7%)
Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLR 426
L ++L SG++ AL+GPSGSGK+T++ L+ + P SG+I G D T ++
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGG---EDATDVPVQ 72
Query: 427 ER-ISYVGQDVFLFSN-TVRYNILIG---RPMATEEEMIEIAKSANAHDFIMSLPQGYDT 481
ER + +V Q LF + TV N+ G +P + EI + ++ L D
Sbjct: 73 ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR 132
Query: 482 YVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--GR 539
Y + LSGGQ+QR+A+ARA+ + +L+LDE ALD +R+ L RL
Sbjct: 133 YPAQ----LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHV 188
Query: 540 TTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569
TT+ + H +E AD ++ + G++ + G
Sbjct: 189 TTVFVTHDQEEALEVADRVVVMNKGRIEQVG 219
>gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 116 bits (293), Expect = 1e-26
Identities = 73/237 (30%), Positives = 112/237 (47%), Gaps = 32/237 (13%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSS-----GS 409
RD+ Y H L INL K+TAL+GPSG GKST++ L RM D G
Sbjct: 10 VRDLNLYYGDKH-ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGE 68
Query: 410 IEIDGINIRD--ITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMA--TEEEMIEIA-- 463
+ +DG NI D + LR R+ V Q F ++ N+ G + ++E+ EI
Sbjct: 69 VLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVES 128
Query: 464 --KSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD 521
K A D + + ++ LSGGQ+QR+ IARA+ +L++DE TSALD
Sbjct: 129 SLKKAALWDEVKDR-------LHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALD 181
Query: 522 THTENLVRQALSRLMQGRTTIVIAH------RISTIIEADHIIFIEDGKVSESGDQK 572
+ + + ++ L + T +++ H R+S D+ F G++ E G
Sbjct: 182 PISTLKIEELITELKKKYTIVIVTHNMQQAARVS-----DYTAFFYLGELVEFGPTD 233
>gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring..
Length = 214
Score = 116 bits (293), Expect = 1e-26
Identities = 70/218 (32%), Positives = 111/218 (50%), Gaps = 11/218 (5%)
Query: 354 VFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEID 413
F +V +Y G L GIN+ +G+ LVGPSG+GKST++ L+ + P+SG+I ++
Sbjct: 2 EFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVN 61
Query: 414 GINI---RDITFSSLRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAH 469
G ++ R LR +I V QD L + V N+ + T EI K A
Sbjct: 62 GQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEV-TGVPPREIRKRVPAA 120
Query: 470 DFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVR 529
++ L + E LSGG++QR+AIARA++ IL+ DE T LD T +
Sbjct: 121 LELVGLSHKHRALPAE----LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIM 176
Query: 530 QALSRLMQGRTTIVIAHRISTIIEA--DHIIFIEDGKV 565
L ++ + TT+V+A +++ +I +E GK+
Sbjct: 177 NLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
>gnl|CDD|144311 pfam00664, ABC_membrane, ABC transporter transmembrane region.
This family represents a unit of six transmembrane
helices. Many members of the ABC transporter family
(pfam00005) have two such regions.
Length = 275
Score = 115 bits (291), Expect = 3e-26
Identities = 66/269 (24%), Positives = 117/269 (43%), Gaps = 2/269 (0%)
Query: 37 MSIVAMITVSLMTSCSAWIMRDVMNAMVASTDIFHVIVVSSTVAGIFIVKGIASFVQNY- 95
+ I+ +I ++ +++++ ++S + I + +Q
Sbjct: 3 IGILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQGSF 62
Query: 96 YLSCA-GNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSVVDIFITSF 154
YL G I R + R++L M F+D+N EL R T+ +R + + F
Sbjct: 63 YLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLF 122
Query: 155 LRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKRVRHIMEQGMVAIGHIIQN 214
+ T+VG ++VMF L+L + I PL IL +L K +R + + A
Sbjct: 123 FQSLATVVGGLIVMFYYGWKLTLVLLAILPLLILLSAVLAKILRKLNRKEQKAYAKAGSV 182
Query: 215 LQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIESATSPIMETISGLSIAGI 274
+E++ GIR VK+F EE +R +++ E K A I + I + IS LS A
Sbjct: 183 AEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAIIAGLSFGITQFISYLSYALA 242
Query: 275 ILFSGFLMSKKGTSNAGEIMSFITALLMA 303
+ F G+L G + G + +F++ L
Sbjct: 243 LWFGGYLSVISGGLSVGTVFAFLSLGLQL 271
>gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 115 bits (290), Expect = 3e-26
Identities = 79/234 (33%), Positives = 125/234 (53%), Gaps = 28/234 (11%)
Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGIN 416
DV FSY GH + +L +G++ A++GPSG+GKST++NL+ P+SG I I+G
Sbjct: 6 DVRFSY--GHLPMR-FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILING-- 60
Query: 417 IRDITFSSLRER-ISYVGQDVFLFSN-TVRYNILIG-----RPMATEEEMIE-IAKSANA 468
D T S ER +S + Q+ LF++ TV NI +G + A + E +E A
Sbjct: 61 -VDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGL 119
Query: 469 HDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528
F+ LP LSGGQ+QR+A+AR ++R+ IL+LDE SALD +
Sbjct: 120 AGFLKRLP-----------GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEM 168
Query: 529 RQALSRLM--QGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKD 579
+S+L + T +++ H AD ++F+++G+++ G + LL K
Sbjct: 169 LALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222
>gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 116 bits (291), Expect = 3e-26
Identities = 65/225 (28%), Positives = 109/225 (48%), Gaps = 27/225 (12%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
F +V +Y G L ++ G+ L GPSG+GKST++ L+ P+ G I ++G
Sbjct: 4 FENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNG 63
Query: 415 INI-----RDITFSSLRERISYVGQDVFLFSN-TVRYNI-----LIGRPMAT-EEEMIEI 462
++ R+I F LR +I V QD L + TV N+ +IG+P + E+
Sbjct: 64 HDLSRLKGREIPF--LRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEV 121
Query: 463 AKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDT 522
+LP S LSGG++QR+AIARA++ +L+ DE T LD
Sbjct: 122 LDLVGLKHKARALP-----------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDP 170
Query: 523 HTENLVRQALSRLMQGRTTIVIA-HRISTIIEADH-IIFIEDGKV 565
+ + + + TT+++A H + + H ++ +EDG++
Sbjct: 171 DLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRL 215
>gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 115 bits (289), Expect = 5e-26
Identities = 61/221 (27%), Positives = 105/221 (47%), Gaps = 22/221 (9%)
Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGIN 416
++ Y + L G++L G M L+GP+G+GK+T++ +L + PSSG+I IDG +
Sbjct: 5 NLTKRYGKKR-ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQD 62
Query: 417 IRDITFSSLRERISYVGQDVFLFSNT-----VRYNILIGRPMATE--EEMIEIAKSANAH 469
+ LR RI Y+ Q+ ++ N + Y + + E + E+ + N
Sbjct: 63 VLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG 121
Query: 470 DFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVR 529
D +G LSGG ++R+ IA+A++ D IL++DE T+ LD R
Sbjct: 122 DR-------AKKKIGS----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFR 170
Query: 530 QALSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569
LS L + R I+ H + + + + + GK+ G
Sbjct: 171 NLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system
belong to the larger ATP-Binding Cassette (ABC)
transporter superfamily. The characteristic feature of
these transporters is the obligatory coupling of ATP
hydrolysis to substrate translocation. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 269
Score = 111 bits (278), Expect = 8e-25
Identities = 66/214 (30%), Positives = 111/214 (51%), Gaps = 13/214 (6%)
Query: 372 INLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE---- 427
++L + G++ ++G SGSGKST++ + R+ +P+SG + IDG +I ++ LRE
Sbjct: 43 VSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102
Query: 428 RISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGEN 486
+IS V Q L + TV N+ G + ++A A + ++ L Y E
Sbjct: 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALE-LVGLEGWEHKYPDE- 160
Query: 487 GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRL--MQGRTTIVI 544
LSGG +QR+ +ARA+ D IL++DEA SALD ++ L RL +T + I
Sbjct: 161 ---LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFI 217
Query: 545 AHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQ 577
H + + D I ++DG++ + G + +L
Sbjct: 218 THDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
>gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast
cancer resistance protein) [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 613
Score = 110 bits (277), Expect = 8e-25
Identities = 76/239 (31%), Positives = 120/239 (50%), Gaps = 17/239 (7%)
Query: 352 TTVFRDVFFSYKQGH----PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPS- 406
FR++ S K+ +L G++ K G++ A++GPSGSGK+T++N L +
Sbjct: 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGL 84
Query: 407 --SGSIEIDGINIRDITFSSLRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIA 463
SG I ++G R S R+ YV QD L TVR + + + +
Sbjct: 85 KLSGEILLNG---RPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEE 141
Query: 464 KSANAHDFI--MSLPQGYDTYVG-ENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSAL 520
K + I + L + DT +G LSGG+++R++IA +L D IL LDE TS L
Sbjct: 142 KRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201
Query: 521 DTHTENLVRQALSRLMQ-GRTTIVIAHRISTIIEA--DHIIFIEDGKVSESGDQKYLLQ 576
D+ + V Q L RL + GRT I H+ S+ + D ++ + +G+V SG + LL+
Sbjct: 202 DSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE 260
>gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 110 bits (275), Expect = 2e-24
Identities = 107/510 (20%), Positives = 198/510 (38%), Gaps = 58/510 (11%)
Query: 80 AGIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHA 139
G+ ++ ++S + L+ G I + + + +++L +E + S+ L T
Sbjct: 55 LGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSD 114
Query: 140 TQSVRSVVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKRVRH 199
+++ S + ++ + +G + P + L T++ + I G +L+ RV
Sbjct: 115 VRNI-SFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYK 173
Query: 200 IMEQGMVAIGHIIQNLQETVIGIRIVKSFA--MEEVMNQRMCNMIKEVEDRLNKVAKIES 257
M + + Q + G + + E V N +E + +
Sbjct: 174 HMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRA-NTFH 232
Query: 258 ATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRIIL 317
+ I L + G++ F + ++ + A I + L
Sbjct: 233 LLAVNWSNIMLLGLIGLV----FWL-------------ALSLGWASTNVAATIVLVLLFL 275
Query: 318 EG---GMVGVRCMFSL----LDHPIMIEESPHAVNLPVGK-----GTTVFRDVFFSYKQG 365
VG+ + +E +P+ + P + T R+V F+Y+
Sbjct: 276 RTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDWKTLELRNVRFAYQDN 335
Query: 366 HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSL 425
+ INL K G++ L+G +GSGKST+ LL +Y P SG I +DG +
Sbjct: 336 AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDY 395
Query: 426 RERISYVGQDVFLFSNTVRYNILIGRPMATEE------EMIEIAKSANAHDFIMSLPQGY 479
R+ S V D LF + A+ + + +E+A + +D S
Sbjct: 396 RKLFSAVFSDYHLFDQLLG-----PEGKASPQLIEKWLQRLELAHKTSLNDGRFSN---- 446
Query: 480 DTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM--Q 537
LS GQK+R+A+ A+L + ILVLDE + D Q L L+ Q
Sbjct: 447 --------LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQ 498
Query: 538 GRTTIVIAHRISTIIEADHIIFIEDGKVSE 567
G+T I+H I AD ++ + +G++SE
Sbjct: 499 GKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
>gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface of
many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits, or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself is
required to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2..
Length = 282
Score = 110 bits (275), Expect = 2e-24
Identities = 65/210 (30%), Positives = 111/210 (52%), Gaps = 17/210 (8%)
Query: 357 DVFFSY--KQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
++FFS G PVL INL + G+M A+ G +GSGK++++ L++ +PS G I+ G
Sbjct: 39 NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG 98
Query: 415 INIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMS 474
RIS+ Q ++ T++ NI+ G E + K+ + I
Sbjct: 99 -------------RISFSSQFSWIMPGTIKENIIFGVSY-DEYRYKSVVKACQLEEDITK 144
Query: 475 LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTEN-LVRQALS 533
P+ +T +GE G LSGGQ+ RI++ARA+ +D + +LD LD TE + +
Sbjct: 145 FPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVC 204
Query: 534 RLMQGRTTIVIAHRISTIIEADHIIFIEDG 563
+LM +T I++ ++ + +AD I+ + +G
Sbjct: 205 KLMANKTRILVTSKMEHLKKADKILILHEG 234
>gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment
(EP) precursor transport, regulation of
lipid-trafficking mechanisms, and pleiotropic drug
resistance (DR). DR is a well-described phenomenon
occurring in fungi and shares several similarities with
processes in bacteria and higher eukaryotes. Compared
to other members of the ABC transporter subfamilies, the
ABCG transporter family is composed of proteins that
have an ATP-binding cassette domain at the N-terminus
and a TM (transmembrane) domain at the C-terminus..
Length = 194
Score = 109 bits (275), Expect = 2e-24
Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 43/205 (20%)
Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLM--RMYDPSSGSIEIDGINIRDITFSS 424
+L ++ K G++TA++GPSG+GKST++N L R SG + I+G + +F
Sbjct: 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSF-- 80
Query: 425 LRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYV 483
R+ I YV QD L TVR ++ +A
Sbjct: 81 -RKIIGYVPQDDILHPTLTVRETLMF---------------AAKL--------------- 109
Query: 484 GENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ-GRTTI 542
LSGG+++R++IA ++ + +L LDE TS LD+ + V L RL GRT I
Sbjct: 110 ----RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTII 165
Query: 543 VIAHRISTIIEA--DHIIFIEDGKV 565
H+ S+ I D ++ + G+V
Sbjct: 166 CSIHQPSSEIFELFDKLLLLSQGRV 190
>gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 109 bits (273), Expect = 3e-24
Identities = 77/248 (31%), Positives = 118/248 (47%), Gaps = 21/248 (8%)
Query: 356 RDVFFSYKQGH---PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI 412
R++ Y G L+ ++L + G+ +VG SGSGKST+ LL + PSSGSI +
Sbjct: 7 RNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILL 66
Query: 413 DGINI-RDITFSSLRERISYVGQDVFLFSN---TVRYNILIGRPMATEEEMIEIAKSANA 468
DG + + + V QD + N TV ++ P+ + A
Sbjct: 67 DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGR--ILSEPLRPHGLSKSQQRIAEL 124
Query: 469 HDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528
D + P D E LSGGQ+QRIAIARA++ + +L+LDE TSALD + +
Sbjct: 125 LDQVGLPPSFLDRRPHE----LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180
Query: 529 RQALSRLMQGR--TTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKDGSLYKK 585
L L + R T + I+H ++ + D I +++G++ E G + LL S
Sbjct: 181 LNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL-----SHPSH 235
Query: 586 MYASQLLE 593
Y +LLE
Sbjct: 236 PYTRELLE 243
>gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 108 bits (270), Expect = 6e-24
Identities = 68/231 (29%), Positives = 112/231 (48%), Gaps = 20/231 (8%)
Query: 372 INLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRD----ITFSSLRE 427
N + +TAL GPSGSGK+++IN++ + P G IE++G + D I +
Sbjct: 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKR 76
Query: 428 RISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGEN 486
RI YV QD LF + TVR N+ G + + ++ + P
Sbjct: 77 RIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYP---------- 126
Query: 487 GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQG-RTTIV-I 544
LSGG+KQR+AI RA+L +L++DE ++LD + + L RL I+ +
Sbjct: 127 -GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV 185
Query: 545 AHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKDGSLYK-KMYASQLLE 593
+H + ++ AD ++ +E+GKV SG + + D + + S +LE
Sbjct: 186 SHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPDFPPWLPREEQSSVLE 236
>gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport
of a variety of lipid compounds. Mutations of members
of ABCA subfamily are associated with human genetic
diseases, such as, familial high-density lipoprotein
(HDL) deficiency, neonatal surfactant deficiency,
degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR)
protein transports vitamin A derivatives in the outer
segments of photoreceptor cells, and therefore, performs
a crucial step in the visual cycle. The ABCA genes are
not present in yeast. However, evolutionary studies of
ABCA genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages..
Length = 220
Score = 107 bits (268), Expect = 1e-23
Identities = 62/229 (27%), Positives = 111/229 (48%), Gaps = 19/229 (8%)
Query: 354 VFRDVFFSYKQG-HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI 412
R++ +YK+G P + ++L G++ L+G +G+GK+T + +L P+SG+ I
Sbjct: 2 QIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYI 61
Query: 413 DGINIRDITFSSLRERISYVGQDVFLFSN-TVR-----YNILIGRPMATEEEMIEIAKSA 466
+G +IR + R+ + Y Q LF TVR Y L G P + +E +E+
Sbjct: 62 NGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLR- 119
Query: 467 NAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTEN 526
++ L + LSGG K+++++A A++ +L+LDE TS LD +
Sbjct: 120 -----VLGLTDKANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRR 170
Query: 527 LVRQALSRLMQGRTTIVIAHRISTI-IEADHIIFIEDGKVSESGDQKYL 574
+ + + +GR+ I+ H + D I + DGK+ G + L
Sbjct: 171 AIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
>gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport
system; part of the binding-protein-dependent transport
system tbpA-thiPQ for thiamine and TPP. Probably
responsible for the translocation of thiamine across the
membrane. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 106 bits (266), Expect = 2e-23
Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 22/221 (9%)
Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGIN 416
+ FSY G + +L F G++TA+VGPSGSGKST++NL+ P SG + I+G+
Sbjct: 5 KIRFSY--GEQPMH-FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGV- 60
Query: 417 IRDITFSSLRER-ISYVGQDVFLFSN-TVRYNILIGRPMA---TEEEMIEIAKSANAHDF 471
D+T + +R +S + Q+ LF++ TV N+ +G T E+ I +
Sbjct: 61 --DVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALAR--- 115
Query: 472 IMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQA 531
G LSGG++QR+A+AR ++RD +L+LDE +ALD +
Sbjct: 116 -----VGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDL 170
Query: 532 LSRL--MQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569
+ L T +++ H+ A ++F+++G+++ G
Sbjct: 171 VLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
>gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 106 bits (266), Expect = 2e-23
Identities = 64/213 (30%), Positives = 109/213 (51%), Gaps = 20/213 (9%)
Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS---- 424
++L K G++ AL+G +G+GKST++ +L +Y P SG I +DG +++ S
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDG---KEVRIKSPRDA 76
Query: 425 LRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMS---LPQGYD 480
+R I V Q L TV NI++G ++ +I+ ++ + LP D
Sbjct: 77 IRLGIGMVHQHFMLVPTLTVAENIILGLE-PSKGGLIDRRQARARIKELSERYGLPVDPD 135
Query: 481 TYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSAL-DTHTENLVRQALSRLM-QG 538
V + LS G++QR+ I +A+ R +L+LDE T+ L + L + L RL +G
Sbjct: 136 AKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELF-EILRRLAAEG 190
Query: 539 RTTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570
+T I I H++ ++ AD + + GKV + D
Sbjct: 191 KTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223
Score = 70.6 bits (173), Expect = 1e-12
Identities = 50/249 (20%), Positives = 110/249 (44%), Gaps = 13/249 (5%)
Query: 347 PVGKGTTVF--RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD 404
P G V D+ ++G + ++ ++G++ + G +G+G+S ++ + +
Sbjct: 250 PSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK 309
Query: 405 PSSGSIEIDGINIRDITFSSLRER--ISYVGQDVF----LFSNTVRYNILIGRPMATEEE 458
P+SG I ++G ++ R R ++YV +D + ++ N+++GR
Sbjct: 310 PASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFS 369
Query: 459 MIEIAKSANAHDFIMSLPQGYDTYVGENGS---NLSGGQKQRIAIARAMLRDGHILVLDE 515
F L + +D + +LSGG +Q++ +AR + R +L+ +
Sbjct: 370 RGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQ 429
Query: 516 ATSALDTHTENLVRQALSRL-MQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKY 573
T LD + + L L G+ ++I+ + I+E +D I I +G++ +
Sbjct: 430 PTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489
Query: 574 LLQQKDGSL 582
+++ G L
Sbjct: 490 ATREEIGLL 498
>gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 105 bits (264), Expect = 3e-23
Identities = 60/214 (28%), Positives = 93/214 (43%), Gaps = 43/214 (20%)
Query: 360 FSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRD 419
F K+ + G++ K G+ LVG SG GKST+ L++ + +P+SG I +G +I
Sbjct: 20 FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK 79
Query: 420 ITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGY 479
++ RER+ E++E
Sbjct: 80 LSKEERRERV---------------------------LELLEKVGLPEEF---------L 103
Query: 480 DTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ-- 537
Y E LSGGQ+QRI IARA+ + ++V DE SALD + + L L +
Sbjct: 104 YRYPHE----LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL 159
Query: 538 GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570
G T + I+H +S + +D I + GK+ E G
Sbjct: 160 GLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGP 193
>gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 105 bits (263), Expect = 4e-23
Identities = 57/238 (23%), Positives = 103/238 (43%), Gaps = 23/238 (9%)
Query: 359 FFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDP-----SSGSIEID 413
F + + G++ K G++ +VG SGSGKS + +M + G I D
Sbjct: 11 FPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFD 70
Query: 414 GINIRDITFSSLRE----RISYVGQD-------VFLFSNTVRYNILIGRPMATEEEMIEI 462
G ++ ++ LR+ I+ + QD V + + + + +++E E
Sbjct: 71 GKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKER 130
Query: 463 AKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDT 522
A I + +Y E LSGG +QR+ IA A+ + +L+ DE T+ALD
Sbjct: 131 AIELLELVGIPDPERRLKSYPHE----LSGGMRQRVMIAMALALNPKLLIADEPTTALDV 186
Query: 523 HTENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQ 577
+ + L L + G I+I H + + E AD + + G++ E G + + +
Sbjct: 187 TVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244
>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the
LIV-I bacterial ABC-type two-component transport system
that imports neutral, branched-chain amino acids. The
E. coli branched-chain amino acid transporter comprises
a heterodimer of ABC transporters (LivF and LivG), a
heterodimer of six-helix TM domains (LivM and LivH), and
one of two alternative soluble periplasmic substrate
binding proteins (LivK or LivJ). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules..
Length = 222
Score = 105 bits (263), Expect = 5e-23
Identities = 68/222 (30%), Positives = 105/222 (47%), Gaps = 26/222 (11%)
Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLR 426
+L G++L G++ AL+G +G+GK+T++ +M + P SGSI DG RDIT
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDG---RDITGLPPH 70
Query: 427 ER----ISYVGQDVFLFSN-TVRYNILIG---RPMATEEEMIEIAKSANAHDFIMSLPQG 478
ER I YV + +F TV N+L+G R A + +E ++ L +
Sbjct: 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLE-----RVYELFPRLKER 125
Query: 479 YDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQG 538
G LSGG++Q +AIARA++ +L+LDE + L + +A+ L
Sbjct: 126 RKQLAG----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE 181
Query: 539 RTTIVI----AHRISTIIEADHIIFIEDGKVSESGDQKYLLQ 576
TI++ A I AD +E G+V G LL
Sbjct: 182 GVTILLVEQNARFALEI--ADRAYVLERGRVVLEGTAAELLA 221
>gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC.
ModC is an ABC-type transporter and the ATPase component
of a molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 104 bits (262), Expect = 5e-23
Identities = 66/216 (30%), Positives = 108/216 (50%), Gaps = 25/216 (11%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT-FSSLR 426
L ++L + G ++GP+GSGKS ++ + P SG I ++G +DIT +
Sbjct: 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNG---KDITNLPPEK 70
Query: 427 ERISYVGQDVFLFSN-TVRYNILIGRPMAT------EEEMIEIAKSANAHDFIMSLPQGY 479
ISYV Q+ LF + TV NI G E +++EIA+ + P+
Sbjct: 71 RDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPE-- 128
Query: 480 DTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ-- 537
LSGG++QR+AIARA++ + IL+LDE SALD T+ +R+ L ++ +
Sbjct: 129 ---------TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEF 179
Query: 538 GRTTIVIAHRISTI-IEADHIIFIEDGKVSESGDQK 572
G T + + H AD + + +GK+ + G +
Sbjct: 180 GVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPE 215
>gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 104 bits (261), Expect = 7e-23
Identities = 68/211 (32%), Positives = 110/211 (52%), Gaps = 17/211 (8%)
Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE- 427
++ +L + G++ ++G SGSGKST++ LL R+ +P+ G I +DG +I ++ + LRE
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 428 ---RISYVGQDVFLFSN-TVRYNILIGRPMA--TEEEMIEIAKSANAHDFIMSLPQGYDT 481
+IS V Q L + TV N+ G + + E E A A ++ L D
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALE---LVGLEGYADK 160
Query: 482 YVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--GR 539
Y E LSGG +QR+ +ARA+ D IL++DEA SALD ++ L L +
Sbjct: 161 YPNE----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKK 216
Query: 540 TTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569
T + I H + + D I ++DG++ + G
Sbjct: 217 TIVFITHDLDEALRIGDRIAIMKDGEIVQVG 247
>gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide or belong in different
polypeptide chains.
Length = 119
Score = 104 bits (261), Expect = 7e-23
Identities = 48/129 (37%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 393 STIINLLMRMYDPSSGSIEIDGINIRDI-TFSSLRERISYVGQDVFLFSN-TVRYNILIG 450
ST++ L+ + P+SG+I +DG + D+ + +LR+RI V QD LF TVR N+ G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTDLSSRKALRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 451 -RPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGH 509
R + E + DF+ P LSGGQKQR+AIARA+L+
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDRSP----------VGTLSGGQKQRVAIARALLKKPK 110
Query: 510 ILVLDEATS 518
+L+LDE T+
Sbjct: 111 LLLLDEPTA 119
>gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter
subfamily is involved in the transport of the
hydrophobic amino acids leucine, isoleucine and valine.
MJ1267 is a branched-chain amino acid transporter with
29% similarity to both the LivF and LivG components of
the E. coli branched-chain amino acid transporter.
MJ1267 contains an insertion from residues 114 to 123
characteristic of LivG (Leucine-Isoleucine-Valine)
homologs. The branched-chain amino acid transporter
from E. coli comprises a heterodimer of ABCs (LivF and
LivG), a heterodimer of six-helix TM domains (LivM and
LivH), and one of two alternative soluble periplasmic
substrate binding proteins (LivK or LivJ)..
Length = 236
Score = 103 bits (258), Expect = 2e-22
Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 19/220 (8%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424
G L ++ + G++ L+GP+G+GK+T+ NL+ P+SGS+ DG DIT
Sbjct: 12 GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDG---EDITGLP 68
Query: 425 LRER----ISYVGQDVFLFSN-TVRYNILIGRPMATEEEMI-------EIAKSANAHDFI 472
E I Q LF TV N+++ T ++ E A + +
Sbjct: 69 PHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELL 128
Query: 473 MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSAL-DTHTENLVRQA 531
+ G LS GQ++R+ IARA+ D +L+LDE + L TE L
Sbjct: 129 ERV--GLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELI 186
Query: 532 LSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570
+G T +++ H + ++ AD + ++ G+V G
Sbjct: 187 RELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226
>gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 102 bits (256), Expect = 2e-22
Identities = 61/216 (28%), Positives = 108/216 (50%), Gaps = 10/216 (4%)
Query: 362 YKQ-GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI 420
Y +L+ I+L ++G+ A+ GPSG GKST++ ++ + P+SG++ +G ++ +
Sbjct: 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL 70
Query: 421 TFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYD 480
+ R+++SY Q LF +TV N++ + A D + D
Sbjct: 71 KPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAAL-----DLLARFALP-D 124
Query: 481 TYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM--QG 538
+ + +N + LSGG+KQRIA+ R + IL+LDE TSALD + + + + R + Q
Sbjct: 125 SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQN 184
Query: 539 RTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKY 573
+ I H I AD +I ++ G E + +
Sbjct: 185 VAVLWITHDKDQAIRHADKVITLQPGHAGEMQEARQ 220
>gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC
transporters homologous to the Drosophila white gene,
which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners..
Length = 226
Score = 102 bits (257), Expect = 2e-22
Identities = 58/210 (27%), Positives = 108/210 (51%), Gaps = 13/210 (6%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDP---SSGSIEIDGINIRDITFSS 424
+L+ ++L +SG++ A++G SGSGK+T+++ + + +SG I +G + F
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF-- 79
Query: 425 LRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYV 483
++ ++YV QD L TVR + + + + + D ++ T +
Sbjct: 80 -QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLR--DLALTRI 136
Query: 484 GENG-SNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ-GRTT 541
G N +SGG+++R++IA +L D +L+LDE TS LD+ T + LS+L + R
Sbjct: 137 GGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIV 196
Query: 542 IVIAHRI-STIIEA-DHIIFIEDGKVSESG 569
I+ H+ S + D I+ + G++ SG
Sbjct: 197 ILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
>gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type
transporter and the ATPase component of a molybdate
transport system that also includes the periplasmic
binding protein ModA and the membrane protein ModB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 214
Score = 102 bits (256), Expect = 3e-22
Identities = 57/200 (28%), Positives = 95/200 (47%), Gaps = 15/200 (7%)
Query: 378 SGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRD----ITFSSLRERISYVG 433
+ ++T + G SG+GKST++ + + P G+I ++G + D I + +I V
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 434 QDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSG 492
Q LF + VR N+ G E S + ++ L + Y + LSG
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNREDRI---SVDELLDLLGLDHLLNRYPAQ----LSG 134
Query: 493 GQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--GRTTIVIAHRIST 550
G+KQR+A+ARA+ +L+LDE SALD + L ++ + I + H +S
Sbjct: 135 GEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSE 194
Query: 551 IIE-ADHIIFIEDGKVSESG 569
AD I+ +EDG++ G
Sbjct: 195 AEYLADRIVVMEDGRLQYIG 214
>gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed..
Length = 213
Score = 102 bits (256), Expect = 3e-22
Identities = 66/210 (31%), Positives = 107/210 (50%), Gaps = 13/210 (6%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424
L +NL G+ L+GPSG GK+T + ++ + +P+SG I I G RD+T
Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGG---RDVTDLP 68
Query: 425 LRER-ISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTY 482
++R I+ V Q+ L+ + TV NI G + + EI + ++ + D
Sbjct: 69 PKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKD-EIDERVREVAELLQIEHLLDRK 127
Query: 483 VGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--GRT 540
LSGGQ+QR+A+ RA++R+ + ++DE S LD +R L RL Q G T
Sbjct: 128 P----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTT 183
Query: 541 TIVIAH-RISTIIEADHIIFIEDGKVSESG 569
TI + H ++ + AD I + DG++ + G
Sbjct: 184 TIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
>gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 102 bits (255), Expect = 3e-22
Identities = 68/233 (29%), Positives = 116/233 (49%), Gaps = 22/233 (9%)
Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI 415
+V SY VL ++L G +T+++GP+G+GKST+++++ R+ SG I IDG+
Sbjct: 5 ENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGL 63
Query: 416 NIRDITFSSLRERISYVGQDVFLFSN-TV-------RYNILIGRPMATEEEMIEIAKSAN 467
+ L +++S + Q+ + S TV R+ GR + +I A
Sbjct: 64 ELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIE-- 121
Query: 468 AHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527
+ L D Y+ E LSGGQ+QR IA + +D ++LDE + LD
Sbjct: 122 ----YLHLEDLSDRYLDE----LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQ 173
Query: 528 VRQALSRLMQ--GRTTIVIAHRIS-TIIEADHIIFIEDGKVSESGDQKYLLQQ 577
+ + L RL G+T +V+ H I+ +DHI+ +++GKV + G ++Q
Sbjct: 174 IMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226
>gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 98.4 bits (245), Expect = 5e-21
Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 14/216 (6%)
Query: 364 QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFS 423
G +L G++L + G++ A++GP+G+GKST++ L P SG + ++G+ +
Sbjct: 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPE 71
Query: 424 SLRERISYVGQDVFL-FSNTVRYNILIGR-PMATEEEMIEIAKSANAHDFIMSLPQGYDT 481
L + + Q+ L F TV+ + +GR P + E E + A ++
Sbjct: 72 ELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ---ALAA-TDLSG 127
Query: 482 YVGENGSNLSGGQKQRIAIARAMLR------DGHILVLDEATSALD-THTENLVRQALSR 534
G + LSGG++QR+ +AR + + G L LDE TSALD H + +R A
Sbjct: 128 LAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQL 187
Query: 535 LMQGRTTIVIAHRIS-TIIEADHIIFIEDGKVSESG 569
+G + + H ++ AD I+ + G+V SG
Sbjct: 188 AREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASG 223
>gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 98.6 bits (246), Expect = 5e-21
Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 10/218 (4%)
Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI-TFSSL 425
L G++L + G++ AL+G +G+GK+T++ +M + P SG I DG +I +
Sbjct: 17 QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERA 76
Query: 426 RERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVG 484
R I+YV + +F TV N+L+G ++E E + + L
Sbjct: 77 RLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDL-----EEVYELFPRLKERRN 131
Query: 485 ENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRL--MQGRTTI 542
+ LSGG++Q +AIARA++ +L+LDE + L + +A+ L G T +
Sbjct: 132 QRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTIL 191
Query: 543 VIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKD 579
++ +E AD +E+G++ SG LL D
Sbjct: 192 LVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229
>gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 98.0 bits (244), Expect = 6e-21
Identities = 81/275 (29%), Positives = 126/275 (45%), Gaps = 31/275 (11%)
Query: 332 DHPIMIEESPHAVNLPVGKGTTVFRDVFFSYKQGH-PVLSGINLCFKSGKMTALVGPSGS 390
D P+++E V P+ G F H + GI+L + G+ LVG SGS
Sbjct: 272 DAPVLLEVEDLRVWFPIKGG-------FLRRTVDHLRAVDGISLTLRRGQTLGLVGESGS 324
Query: 391 GKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS---LRERISYVGQDVFLFSNTVRYNI 447
GKST+ L+R+ PS G I DG +I ++ LR R+ V QD + S + R +
Sbjct: 325 GKSTLGLALLRL-IPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPY-GSLSPRMTV 382
Query: 448 --LIGRPMATEEEMIEIA-KSANAHDFIMSL---PQGYDTYVGENGSNLSGGQKQRIAIA 501
+I + E + A + + + + P + Y E SGGQ+QRIAIA
Sbjct: 383 GQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHE----FSGGQRQRIAIA 438
Query: 502 RAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHII 558
RA++ +++LDE TSALD + V L L Q G + + I+H ++ + +I
Sbjct: 439 RALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVI 498
Query: 559 FIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLE 593
+ DGK+ E G + + + Y LL
Sbjct: 499 VMRDGKIVEQGPTEAVFANP-----QHEYTRALLA 528
Score = 78.0 bits (192), Expect = 7e-15
Identities = 62/263 (23%), Positives = 113/263 (42%), Gaps = 39/263 (14%)
Query: 356 RDVFFSYKQGH---PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRM--YDPS---S 407
R++ ++ Q + GI+ ++G+ ALVG SGSGKS ++ + + S
Sbjct: 10 RNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPS 69
Query: 408 GSIEIDGINIRDITFSSLR----ERISYVGQDVFLFSN-----------TVRYNILIGRP 452
GSI DG ++ + LR +I + Q+ N +R + + R
Sbjct: 70 GSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRA 129
Query: 453 MATEE--EMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHI 510
A E++E+ + + P LSGGQ+QR+ IA A+ + +
Sbjct: 130 AARARALELLELVGIPEPEKRLDAYPH-----------ELSGGQRQRVMIAMALANEPDL 178
Query: 511 LVLDEATSALDTHTENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSE 567
L+ DE T+ALD + + L L G + I H + + + AD + ++ G++ E
Sbjct: 179 LIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238
Query: 568 SGDQKYLLQQKDGSLYKKMYASQ 590
+G + L +K+ A++
Sbjct: 239 TGTTETLFAAPQHPYTRKLLAAE 261
>gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase
component of the spermidine/putrescine-preferential
uptake system consisting of PotA, -B, -C, and -D. PotA
has two domains with the N-terminal domain containing
the ATPase activity and the residues required for
homodimerization with PotA and heterdimerization with
PotB. ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 232
Score = 98.3 bits (245), Expect = 6e-21
Identities = 67/219 (30%), Positives = 108/219 (49%), Gaps = 12/219 (5%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
+V Y L G++L K G+ L+GPSG GK+T++ L+ P+SG I +DG
Sbjct: 3 LENVSKFYGGFV-ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDG 61
Query: 415 INIRDITFSSLRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIM 473
+I ++ + ++ V Q+ LF + TV NI G + + + A A D +
Sbjct: 62 KDITNL--PPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLV- 118
Query: 474 SLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALS 533
+ Y S LSGGQ+QR+AIARA++ + +L+LDE ALD ++ L
Sbjct: 119 ----QLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELK 174
Query: 534 RLMQ--GRTTIVIAHRIS-TIIEADHIIFIEDGKVSESG 569
RL + G T + + H + +D I + GK+ + G
Sbjct: 175 RLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIG 213
>gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 96.1 bits (239), Expect = 2e-20
Identities = 62/245 (25%), Positives = 107/245 (43%), Gaps = 11/245 (4%)
Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGIN 416
D+ SY + ++ + G++T L+G +G+GK+T++ ++ + P SG + IDG++
Sbjct: 6 DLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVD 65
Query: 417 IRDITFSSLRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSL 475
S +R +I + + L++ T R N+ A + A + L
Sbjct: 66 TVRDP-SFVRRKIGVLFGERGLYARLTARENLKY---FARLNGLSRKEIKARIAELSKRL 121
Query: 476 PQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRL 535
Y+ S G KQ++AIARA++ D ILVLDE TS LD T + +L
Sbjct: 122 --QLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQL 179
Query: 536 M-QGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG--DQKYLLQQKDGSLYKKMYASQL 591
+GR I +H + + D +I + G+V G + +A +L
Sbjct: 180 KNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLEEIFAFALKL 239
Query: 592 LENLS 596
E
Sbjct: 240 EEGTF 244
>gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 96.1 bits (239), Expect = 3e-20
Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 26/244 (10%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT--- 421
H VL G++L +G + +++G SGSGKST + + + PS+GSI ++G IR
Sbjct: 18 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKD 77
Query: 422 ----------FSSLRERISYVGQDVFLFSNTVRYNILIGRPM----ATEEEMIEIAKSAN 467
LR R+ V Q L+S+ +I P+ ++ E IE A+
Sbjct: 78 GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYL 137
Query: 468 AHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527
A + + + D Y LSGGQ+QR+AIARA+ + +++ DE TSALD
Sbjct: 138 AK---VGIAEKADAYPAH----LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGE 190
Query: 528 VRQALSRLMQ-GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKDGSLYKK 585
V + + L + GRT +V+ H + + + H+IF+ GK+ E G + + K+
Sbjct: 191 VLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQSPRLKQ 250
Query: 586 MYAS 589
+S
Sbjct: 251 FLSS 254
>gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 96.1 bits (239), Expect = 3e-20
Identities = 62/240 (25%), Positives = 106/240 (44%), Gaps = 30/240 (12%)
Query: 346 LPVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDP 405
+GK F +V Y G +L ++ G A+VGP+G+GKST++ LL P
Sbjct: 315 KRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP 374
Query: 406 SSGSIEIDGINIRDITFSSLRERISYVGQDV--FLFSNTVRYNILIGRPMATEEEMIEIA 463
SG++++ G + +I Y Q TV + G P E+E+
Sbjct: 375 LSGTVKV-GETV----------KIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEV---- 419
Query: 464 KSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTH 523
A F + + LSGG+K R+ +A+ +L+ ++L+LDE T+ LD
Sbjct: 420 -RAYLGRFGFTGED-----QEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIE 473
Query: 524 TENLVRQALSRLMQGRTTIVIAHR---ISTIIEADHIIFIEDGKVSESGDQKYLLQQKDG 580
+ + +AL +G T ++++H + + A I +ED G + L+QK
Sbjct: 474 SLEALEEALLDF-EG-TVLLVSHDRYFLDRV--ATRIWLVEDKVEEFEGGYEDYLEQKKE 529
Score = 93.0 bits (231), Expect = 2e-19
Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 40/242 (16%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424
P+L ++L G+ LVG +G+GKST++ +L +P SG +
Sbjct: 15 DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK---------- 64
Query: 425 LRERISYVGQDVFLFSN-TVRYNILIG-RPMATEEEMIEIAKSANAHDFIMSLPQGYDTY 482
R+ Y+ Q+ L TV ++ G + +E A + A L +
Sbjct: 65 -GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALL 123
Query: 483 VGENG-----------------------SNLSGGQKQRIAIARAMLRDGHILVLDEATSA 519
+G S+LSGG ++R+A+ARA+L + +L+LDE T+
Sbjct: 124 EELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNH 183
Query: 520 LDTHTENLVRQALSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKV-SESGDQKYLLQQ 577
LD + + L R T IV++H + A HI+ ++ GK+ G+ L+Q
Sbjct: 184 LDLESIEWLEDYLKRYP--GTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQ 241
Query: 578 KD 579
K
Sbjct: 242 KA 243
>gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of
a bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilus, NatAB is inducible by
agents such as ethanol and protonophores, which lower
the protonmotive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunomycin- and doxorubicin-efflux system.
Hence, the functional NatAB is presumably assembled
with two copies of a single ATP-binding protein and a
single intergral membrane protein..
Length = 218
Score = 94.9 bits (236), Expect = 6e-20
Identities = 51/206 (24%), Positives = 94/206 (45%), Gaps = 11/206 (5%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427
+ G++ K G++T L+GP+G+GK+T + +L + +P +G +DG + E
Sbjct: 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFD----VVKEPAE 75
Query: 428 RISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQ--GYDTYVGE 485
+G F+ +T Y+ L R + K + L G + +
Sbjct: 76 ARRRLG---FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR 132
Query: 486 NGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIA 545
S G +Q++AIARA++ D +L+LDE T+ LD +R+ + +L I+ +
Sbjct: 133 RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFS 192
Query: 546 HRISTIIEA--DHIIFIEDGKVSESG 569
I +E D ++ + G+V G
Sbjct: 193 THIMQEVERLCDRVVVLHRGRVVYEG 218
>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
(PDR1-15), ABC superfamily [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 1391
Score = 94.6 bits (235), Expect = 7e-20
Identities = 72/260 (27%), Positives = 113/260 (43%), Gaps = 45/260 (17%)
Query: 336 MIEESPHAVN----LPVGKGTTVFRDVFF--------SYKQGH-PVLSGINLCFKSGKMT 382
+++S H LP + F+DVF+ + G +L+ ++ FK G +T
Sbjct: 761 KLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLT 820
Query: 383 ALVGPSGSGKSTIINLLMRMYDPS--SGSIEIDGINIRDITFSSLRERISYVGQ-DVFLF 439
AL+G SG+GK+T++++L G I I G TF YV Q D+
Sbjct: 821 ALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETF---ARVSGYVEQQDIHSP 877
Query: 440 SNTVR------------YNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENG 487
TVR + EE+IE ++ L + D VG G
Sbjct: 878 ELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIE----------LLELKEYADALVGLPG 927
Query: 488 SNLSGGQKQRIAIARAML-RDGHILVLDEATSALDTHTENLVRQALSRL-MQGRTTIVIA 545
S LS Q++R+ I ++ IL LDE TS LD+ +V + L +L G+T +
Sbjct: 928 SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTI 987
Query: 546 HRIS-TIIEA-DHIIFIEDG 563
H+ S I EA D ++ ++ G
Sbjct: 988 HQPSIDIFEAFDELLLLKRG 1007
Score = 71.1 bits (174), Expect = 8e-13
Identities = 65/245 (26%), Positives = 115/245 (46%), Gaps = 19/245 (7%)
Query: 337 IEESPHAVNLPVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTII 396
+ P VN+ ++ R + K+ +L I+ K G+MT ++GP GSGK+T++
Sbjct: 99 VTYGPTLVNILSNPLESILRMLGKRKKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLL 158
Query: 397 NLLMRMYDP---SSGSIEIDGINIRDITFSSLRERISYVGQ-DVFLFSNTVRYNI-LIGR 451
L D SSG I +G ++++ ++ ++Y + DV TVR + R
Sbjct: 159 KALAGKLDNFLKSSGEITYNGHDLKEF---VPKKTVAYNSEQDVHFPELTVRETLDFAAR 215
Query: 452 ---PMATEEEMIEIAKSANAHDFIMS---LPQGYDTYVGENG-SNLSGGQKQRIAIARAM 504
P + +E+ K A D+++ L DT VG + +SGG+++R++I +
Sbjct: 216 CKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEML 275
Query: 505 LRDGHILVLDEATSALDTHTENLVRQALSRL--MQGRTTIVIAHRIS--TIIEADHIIFI 560
+ IL DE T LD+ T + +AL +L + G T +V + S D +I +
Sbjct: 276 VGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILL 335
Query: 561 EDGKV 565
+G
Sbjct: 336 SEGYQ 340
>gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 94.6 bits (235), Expect = 7e-20
Identities = 59/247 (23%), Positives = 103/247 (41%), Gaps = 23/247 (9%)
Query: 338 EESPHAVNLPVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIIN 397
+E + + + ++V G +L ++ G+ A+VGP+G+GK+T+++
Sbjct: 17 KEPKKRHPIEINEPLIELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLS 75
Query: 398 LLMRMYDPSSGSIEIDGINIRDI-TFSSLRERISYVG---QDVFLFSNTVRYNIL----- 448
LL + PSSG + + G T LR+RI V + F TVR +L
Sbjct: 76 LLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFA 135
Query: 449 -IGRPMAT-EEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLR 506
IG E + A+ + G +LS G+++R+ IARA+++
Sbjct: 136 SIGIYQEDLTAEDLAAAQW-------LLELLGAKHLADRPFGSLSQGEQRRVLIARALVK 188
Query: 507 DGHILVLDEATSALDTHTENLVRQALSRLMQ---GRTTIVIAHRISTII-EADHIIFIED 562
D +L+LDE LD + L L + + H I H + +++
Sbjct: 189 DPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKE 248
Query: 563 GKVSESG 569
G+V G
Sbjct: 249 GEVVAQG 255
>gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents
ABC transporters involved in peptide antibiotic
resistance. Bacitracin is a dodecapeptide antibiotic
produced by B. licheniformis and B. subtilis. The
synthesis of bacitracin is non-ribosomally catalyzed by
a multienzyme complex BcrABC. Bacitracin has potent
antibiotic activity against gram-positive bacteria. The
inhibition of peptidoglycan biosynthesis is the best
characterized bacterial effect of bacitracin. The
bacitracin resistance of B. licheniformis is mediated by
the ABC transporter Bcr which is composed of two
identical BcrA ATP-binding subunits and one each of the
integral membrane proteins, BcrB and BcrC. B. subtilis
cells carrying bcr genes on high-copy number plasmids
develop collateral detergent sensitivity, a similar
phenomenon in human cells with overexpressed multi-drug
resistance P-glycoprotein..
Length = 208
Score = 93.7 bits (233), Expect = 1e-19
Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 24/214 (11%)
Query: 364 QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFS 423
VL I+L K G++ +GP+G+GK+T + +++ + P SG I DG + +
Sbjct: 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--I 68
Query: 424 SLRERISYVGQDVFLFSN-TVRYNI-----LIGRPMATEEEMIEIAKSANAHDFIMSLPQ 477
RI + + + N T R N+ L+G +E++++
Sbjct: 69 EALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVV-------------- 114
Query: 478 GYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM- 536
G + S G KQR+ IA A+L + +L+LDE T+ LD +R+ + L
Sbjct: 115 GLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD 174
Query: 537 QGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569
QG T ++ +H +S I + AD I I GK+ E G
Sbjct: 175 QGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
>gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 93.3 bits (232), Expect = 2e-19
Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 28/223 (12%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427
++ ++L + G++ L+GP+G+GK+T+ NL+ Y PSSG++ G RDIT
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRG---RDITGLPPHR 75
Query: 428 R----ISYVGQDVFLFSN-TVRYNILIG------------RPMATEEEMIEIAKSANAHD 470
I+ Q LF TV N+ +G RP A +EE ++ +
Sbjct: 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLE 135
Query: 471 FIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSAL-DTHTENLVR 529
F+ G NLS GQ++R+ IARA+ +L+LDE + L TE L
Sbjct: 136 FV-----GLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAE 190
Query: 530 QALS-RLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570
R G T ++I H + ++ AD I+ + G+V G
Sbjct: 191 LIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233
>gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster
assembly, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 251
Score = 89.8 bits (223), Expect = 2e-18
Identities = 66/237 (27%), Positives = 107/237 (45%), Gaps = 37/237 (15%)
Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLM--RMYDPSSGSIEID 413
+D+ + +L G+NL K G++ A++GP+GSGKST+ +M Y+ + G I D
Sbjct: 7 KDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFD 66
Query: 414 GINIRDITFSSLRER--------------ISYVGQDVFLFSNTVRYNILIGRP---MATE 456
G DI S ER I V FL N G
Sbjct: 67 G---EDILELSPDERARAGIFLAFQYPVEIPGVTNSDFL---RAAMNARRGARGILPEFI 120
Query: 457 EEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEA 516
+E+ E A+ + + + YV E SGG+K+R I + +L + + +LDE
Sbjct: 121 KELKEKAELLGLDEEFL------ERYVNE---GFSGGEKKRNEILQLLLLEPKLAILDEP 171
Query: 517 TSALDTHTENLVRQALSRLMQ-GRTTIVIAH--RISTIIEADHIIFIEDGKVSESGD 570
S LD +V + ++ L + GR ++I H R+ I+ D + + DG++ +SGD
Sbjct: 172 DSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGD 228
>gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 89.3 bits (221), Expect = 3e-18
Identities = 60/230 (26%), Positives = 107/230 (46%), Gaps = 29/230 (12%)
Query: 366 HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT---- 421
H L I L G+ L+GPSG+GKS+++ +L + P SG++ I G N D +
Sbjct: 15 HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAG-NHFDFSKTPS 73
Query: 422 ---FSSLRERISYVGQDVFLFSNTVRYNILIGRP-----MATEEEM---IEIAKSANAHD 470
LR + V Q L+ + LI P ++ ++ + ++ K
Sbjct: 74 DKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP 133
Query: 471 FIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQ 530
+ P +LSGGQ+QR+AIARA++ + +L+ DE T+ALD +
Sbjct: 134 YADRYPL-----------HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182
Query: 531 ALSRLMQ-GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQK 578
+ L + G T +++ H + + A ++++E+G + E GD + +
Sbjct: 183 IIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQ 232
>gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 88.4 bits (219), Expect = 4e-18
Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 14/209 (6%)
Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI---TFS 423
+L G+ L K G+ A+VGPSGSGKST++ +L + DPSSG + + G + + +
Sbjct: 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83
Query: 424 SLR-ERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFI-MSLPQGYD 480
+LR + +V Q L N T N+ + P+ E +++ + L +
Sbjct: 84 ALRARHVGFVFQSFHLIPNLTALENVAL--PLELRGESSADSRAGAKALLEAVGLGKRLT 141
Query: 481 TYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGR- 539
Y + LSGG++QR+A+ARA +L DE T LD T + + L L + R
Sbjct: 142 HYPAQ----LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERG 197
Query: 540 -TTIVIAHRISTIIEADHIIFIEDGKVSE 567
T +++ H D + + G++ E
Sbjct: 198 TTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
>gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium..
Length = 232
Score = 87.1 bits (216), Expect = 1e-17
Identities = 60/228 (26%), Positives = 107/228 (46%), Gaps = 20/228 (8%)
Query: 361 SYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI 420
Y V++G++L K G++ L+GP+G+GK+T +++ + P SG I +DG +DI
Sbjct: 9 RYG-KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDG---QDI 64
Query: 421 TFSSLRER----ISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANA-HDF-IM 473
T + +R I Y+ Q+ +F TV NIL + + K +F I
Sbjct: 65 TKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT 124
Query: 474 SLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALS 533
L + S+LSGG+++R+ IARA+ + L+LDE + +D +++ +
Sbjct: 125 HLRK-------SKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIK 177
Query: 534 RLMQGRTTIVIA-HRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKD 579
L ++I H + + D I +GKV G + + +
Sbjct: 178 ILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANEL 225
>gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 86.5 bits (214), Expect = 2e-17
Identities = 63/226 (27%), Positives = 105/226 (46%), Gaps = 21/226 (9%)
Query: 352 TTVFRDVFFSYKQ-GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSI 410
+ SY+ L ++L SG++ ++GPSG GK+T++NL+ PS GSI
Sbjct: 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI 62
Query: 411 EIDGINIRDITFSSLRERISYVGQDVFLFS-NTVRYNILIGRPMATEEEMIEIAKSANAH 469
+++G R I + V Q+ L V N+ G + E+ + AH
Sbjct: 63 QLNG---RRIEGPGAERGV--VFQNEALLPWLNVIDNVAFGLQLRGIEKA---QRREIAH 114
Query: 470 DFI--MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527
+ + L Y+ + LSGG +QR+ IARA+ + +L+LDE ALD T
Sbjct: 115 QMLALVGLEGAEHKYIWQ----LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQ 170
Query: 528 VRQALSRLMQ--GRTTIVIAHRI-STIIEADHIIFIE--DGKVSES 568
+++ L L Q G+ ++I H I + A ++ + G+V E
Sbjct: 171 MQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVER 216
>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 84.9 bits (210), Expect = 6e-17
Identities = 49/210 (23%), Positives = 88/210 (41%), Gaps = 18/210 (8%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
++ G +LS +N + G+ + G SG+GK++++ L ++ SG I +
Sbjct: 395 LENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA 454
Query: 415 INIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMA--TEEEMIEIAKSANAHDFI 472
+ ++ Q +L T+R + ++ E++ + D
Sbjct: 455 -----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLA 503
Query: 473 MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL 532
L + LSGG++QR+A AR +L + LDEATSALD TE+ + Q L
Sbjct: 504 ERLDE-----EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLL 558
Query: 533 SRLMQGRTTIVIAHRISTIIEADHIIFIED 562
+ T I + HR + + + D
Sbjct: 559 KEELPDATVISVGHRPTLWNFHSRQLELLD 588
>gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multiprotein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet..
Length = 200
Score = 84.0 bits (208), Expect = 1e-16
Identities = 65/228 (28%), Positives = 108/228 (47%), Gaps = 44/228 (19%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLM--RMYDPSSGSIEIDGINIRDITF 422
G +L G+NL K G++ AL+GP+GSGKST+ +M Y+ + G I G DIT
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG---EDITD 68
Query: 423 SSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTY 482
ER R I + E ++ A DF+ + +G
Sbjct: 69 LPPEER--------------ARLGIFLAFQYPPEIPGVKNA------DFLRYVNEG---- 104
Query: 483 VGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM-QGRTT 541
SGG+K+R I + +L + + +LDE S LD LV + +++L +G++
Sbjct: 105 -------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSV 157
Query: 542 IVIAH--RISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMY 587
++I H R+ I+ D + + DG++ +SGD++ L+ + KK Y
Sbjct: 158 LIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELALE-----IEKKGY 200
>gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of
the carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
Pentoses include xylose, arabinose, and ribose.
Important hexoses include glucose, galactose, and
fructose. In members of the Carb_monos family, the
single hydrophobic gene product forms a homodimer while
the ABC protein represents a fusion of two
nucleotide-binding domains. However, it is assumed that
two copies of the ABC domains are present in the
assembled transporter..
Length = 163
Score = 83.9 bits (208), Expect = 1e-16
Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 56/203 (27%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424
G L G++L + G++ AL+G +G+GKST++ +L +Y P SG I +DG ++++F+S
Sbjct: 12 GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDG---KEVSFAS 68
Query: 425 LRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVG 484
R+ V+ S E +M+EI
Sbjct: 69 PRDARRAGIAMVYQLS-------------VGERQMVEI---------------------- 93
Query: 485 ENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM-QGRTTIV 543
ARA+ R+ +L+LDE T+AL + + + RL QG I
Sbjct: 94 ----------------ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIF 137
Query: 544 IAHRISTIIE-ADHIIFIEDGKV 565
I+HR+ + E AD + + DG+V
Sbjct: 138 ISHRLDEVFEIADRVTVLRDGRV 160
>gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 83.9 bits (207), Expect = 1e-16
Identities = 65/254 (25%), Positives = 115/254 (45%), Gaps = 16/254 (6%)
Query: 352 TTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIE 411
T +R F + V ++ + G+ A++G +GSGKST+ +L M +P+SG I
Sbjct: 13 TFRYRTGLFRRQTVEAVKP-VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEIL 71
Query: 412 IDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNI--LIGRPMATEEEMIEIAKSANAH 469
I+ + +S +RI + QD N R I ++ P+ ++ +
Sbjct: 72 INDHPLHFGDYSFRSKRIRMIFQDPNTSLNP-RLRIGQILDFPLRLNTDLEPEQRRKQIF 130
Query: 470 DFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVR 529
+ + + + L+ GQKQR+A+ARA++ I++ DEA ++LD +R
Sbjct: 131 E-TLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMS----MR 185
Query: 530 QALSRLM------QGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKDGSL 582
L LM QG + I + I I +D ++ + +G+V E G +L L
Sbjct: 186 SQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHEL 245
Query: 583 YKKMYASQLLENLS 596
K++ S E L+
Sbjct: 246 TKRLIESHFGEALT 259
>gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 81.8 bits (202), Expect = 5e-16
Identities = 54/239 (22%), Positives = 99/239 (41%), Gaps = 40/239 (16%)
Query: 360 FSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRD 419
L I+ G+ ++G +G+GKST++ L+ +Y P+SG +++ G
Sbjct: 34 GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG----- 88
Query: 420 ITFSSLRERISYV-GQDV-FLFSNTVRYNI-LIGR-----PMATEEEMIEIAKSANAHDF 471
+++ + F T R NI L G +E++ EI + A DF
Sbjct: 89 --------KVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDF 140
Query: 472 IMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQA 531
I D V S G R+A + A + IL+LDE + D +
Sbjct: 141 I-------DQPVK----TYSSGMYARLAFSVATHVEPDILLLDEVLAVGD---AAFQEKC 186
Query: 532 LSRLM----QGRTTIVIAHRISTIIEA-DHIIFIEDGKVSESGDQKYLLQQKDGSLYKK 585
L RL + +T ++++H + I + D I++E G++ G + ++ + L +
Sbjct: 187 LERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEEDLADR 245
>gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins..
Length = 220
Score = 81.8 bits (202), Expect = 5e-16
Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 20/210 (9%)
Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRER 428
+ G++ + G++ L+GP+G+GK+T I +L + P+SG + G ++ +R R
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP-REVRRR 74
Query: 429 ISYVGQDVFL------FSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTY 482
I V QD+ + + N + L G P A E I+ DF + L + D
Sbjct: 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERID-----ELLDF-VGLLEAADRL 128
Query: 483 VGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM--QGRT 540
V SGG ++R+ IAR+++ +L LDE T LD T V + + +L G T
Sbjct: 129 V----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT 184
Query: 541 TIVIAHRISTIIE-ADHIIFIEDGKVSESG 569
++ H + + D + I+ G++ G
Sbjct: 185 ILLTTHYMEEAEQLCDRVAIIDHGRIIAEG 214
>gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 81.0 bits (200), Expect = 9e-16
Identities = 58/224 (25%), Positives = 112/224 (50%), Gaps = 10/224 (4%)
Query: 361 SYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI 420
SYK V++ ++L SG++ L+GP+G+GK+T +++ + P SG I +D +I +
Sbjct: 13 SYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKL 71
Query: 421 T-FSSLRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQG 478
R I Y+ Q+ +F TV NI+ E ++ K+ + L +
Sbjct: 72 PMHKRARLGIGYLPQEASIFRKLTVEDNIMA----VLEIREKDLKKAERKEELDALLEEF 127
Query: 479 YDTYVGEN-GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ 537
+ T++ ++ +LSGG+++R+ IARA+ + ++LDE + +D +++ + L
Sbjct: 128 HITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD 187
Query: 538 GRTTIVIA-HRI-STIIEADHIIFIEDGKVSESGDQKYLLQQKD 579
++I H + T+ D I DGKV G + ++ +D
Sbjct: 188 RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNED 231
>gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 80.7 bits (199), Expect = 1e-15
Identities = 55/225 (24%), Positives = 110/225 (48%), Gaps = 13/225 (5%)
Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLR 426
L+G++L G ++G +G+GKST++N + P+SG I IDG+++ + +
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRA 79
Query: 427 ERISYVGQDVFLFSN---TVRYNILIGRPMATEEEMIEIAKSANAHDF----IMSLPQGY 479
++ V QD + T+ N+ + ++ + A + + L G
Sbjct: 80 NLLARVFQDPLAGTAPELTIEENLALAE-SRGKKRGLSSALNERRRSSFRERLARLGLGL 138
Query: 480 DTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGR 539
+ + + LSGGQ+Q +++ A L IL+LDE T+ALD T V + +++++
Sbjct: 139 ENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEH 198
Query: 540 --TTIVIAHRISTIIE-ADHIIFIEDGKV--SESGDQKYLLQQKD 579
TT+++ H + ++ + +I + GK+ +G++K L D
Sbjct: 199 KLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEEKASLTVLD 243
>gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt The KpsT/Wzt ABC transporter
subfamily is involved in extracellular polysaccharide
export. Among the variety of membrane-linked or
extracellular polysaccharides excreted by bacteria, only
capsular polysaccharides, lipopolysaccharides, and
teichoic acids have been shown to be exported by ABC
transporters. A typical system is made of a conserved
integral membrane and an ABC. In addition to these
proteins, capsular polysaccharide exporter systems
require two 'accessory' proteins to perform their
function: a periplasmic (E.coli) or a lipid-anchored
outer membrane protein called OMA (Neisseria
meningitidis and Haemophilus influenzae) and a
cytoplasmic membrane protein MPA2..
Length = 224
Score = 80.2 bits (198), Expect = 2e-15
Identities = 59/212 (27%), Positives = 92/212 (43%), Gaps = 30/212 (14%)
Query: 366 HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSL 425
L ++ G+ L+G +G+GKST++ LL +Y P SG++ + G
Sbjct: 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG----------- 83
Query: 426 RERISY-----VGQDVFLFSNTVRYNI-LIGRPMATEEEMIEIAKSANAHDFIMSLPQGY 479
R+S G F T R NI L GR + + I+ K +F L
Sbjct: 84 --RVSSLLGLGGG---FNPELTGRENIYLNGRLLGLSRKEID-EKIDEIIEF-SELGDFI 136
Query: 480 DTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL-SRLMQG 538
D V S G K R+A A A + IL++DE + D + ++ L L QG
Sbjct: 137 DLPV----KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQG 192
Query: 539 RTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569
+T I+++H S+I D + +E GK+ G
Sbjct: 193 KTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
>gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea,
the typical organization consists of one ABC and one or
two IMs. Eukaryote systems of the ABCA subfamily
display ABC domains strongly similar to this family.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region in addition to the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 210
Score = 78.3 bits (193), Expect = 5e-15
Identities = 47/202 (23%), Positives = 97/202 (48%), Gaps = 10/202 (4%)
Query: 366 HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSL 425
L I+ + G++ L+GP+G+GK+T I +++ + P SG + DG + + ++
Sbjct: 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG---KPLDIAA- 68
Query: 426 RERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGE 485
R RI Y+ ++ L+ + L+ +A + + + +++ L Y +
Sbjct: 69 RNRIGYLPEERGLYPKMKVIDQLV--YLAQLKGLKKEEARRRIDEWLERL--ELSEYANK 124
Query: 486 NGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM-QGRTTIVI 544
LS G +Q++ A++ D +L+LDE S LD L++ + L G+T I+
Sbjct: 125 RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILS 184
Query: 545 AHRISTIIE-ADHIIFIEDGKV 565
H++ + E D ++ + G+
Sbjct: 185 THQMELVEELCDRVLLLNKGRA 206
>gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 77.2 bits (190), Expect = 1e-14
Identities = 50/233 (21%), Positives = 100/233 (42%), Gaps = 17/233 (7%)
Query: 372 INLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISY 431
I+ G++ +G +G+GKST + +L + P+SG + ++G R R Y
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNG-------KDPFRRREEY 95
Query: 432 VGQDVFLFSN--TVRYNILIGRPMATEEEMIEI--AKSANAHDFIMSLPQGYDTYVGENG 487
+ + + +++ + + + EI + A DF+ + + ++
Sbjct: 96 LRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEI-LDLEGFLKWPV 154
Query: 488 SNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGR-TTIVIA- 545
LS GQ+ R +A A+L +L LDE T LD + + +R+ L + R T+++
Sbjct: 155 RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTT 214
Query: 546 HRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQ--KDGSLYKKMYASQLLENL 595
H I D ++ I+ G++ G L +Q ++ ++ L L
Sbjct: 215 HIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFSVELKQAKSLSQL 267
>gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette
transporter (Pat) is involved in the import of very
long-chain fatty acids (VLCFA) into the peroxisome. The
peroxisomal membrane forms a permeability barrier for a
wide variety of metabolites required for and formed
during fatty acid beta-oxidation. To communicate with
the cytoplasm and mitochondria, peroxisomes need
dedicated proteins to transport such hydrophilic
molecules across their membranes. X-linked
adrenoleukodystrophy (X-ALD) is caused by mutations in
the ALD gene, which encodes ALDP (adrenoleukodystrophy
protein ), a peroxisomal integral membrane protein that
is a member of the ATP-binding cassette (ABC)
transporter protein family. The disease is
characterized by a striking and unpredictable variation
in phenotypic expression. Phenotypes include the
rapidly progressive childhood cerebral form (CCALD), the
milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic)..
Length = 166
Score = 75.2 bits (185), Expect = 5e-14
Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 48/208 (23%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
++ + G +L ++ K G + GPSG+GKS++ L ++ SG I +
Sbjct: 3 LENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPE 62
Query: 415 INIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMS 474
E + ++ Q +L T+R ++ P
Sbjct: 63 -----------GEDLLFLPQRPYLPLGTLREQLI--YPW--------------------- 88
Query: 475 LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSR 534
LSGG++QR+A AR +L + LDEATSALD +E+ + Q L
Sbjct: 89 ------------DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE 136
Query: 535 LMQGRTTIVIAHRISTIIEADHIIFIED 562
L G T I + HR S D ++ ++
Sbjct: 137 L--GITVISVGHRPSLWKFHDRVLDLDG 162
>gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 73.9 bits (181), Expect = 1e-13
Identities = 55/212 (25%), Positives = 108/212 (50%), Gaps = 23/212 (10%)
Query: 377 KSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQD- 435
++G++ LVGP+G+GKST++ + M SGSI+ G + + + L +Y+ Q
Sbjct: 23 RAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQ 81
Query: 436 VFLFSNTVRYNILIGRPMATEEEMI-EIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQ 494
F+ V + + + +P T E++ ++A + D +G + + LSGG+
Sbjct: 82 TPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGE 130
Query: 495 KQRIAIARAMLR-------DGHILVLDEATSALDTHTENLVRQALSRL-MQGRTTIVIAH 546
QR+ +A +L+ G +L+LDE ++LD ++ + + LS L QG ++ +H
Sbjct: 131 WQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSH 190
Query: 547 RIS-TIIEADHIIFIEDGKVSESGDQKYLLQQ 577
++ T+ A ++ GK+ SG ++ +L
Sbjct: 191 DLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222
>gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related
proteins, ABC superfamily [Lipid transport and
metabolism, General function prediction only].
Length = 885
Score = 73.9 bits (181), Expect = 1e-13
Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 17/200 (8%)
Query: 362 YKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIR-DI 420
Y + G++ G+ L+G +G+GK+T +L P+SG I G +I
Sbjct: 574 YGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVST 633
Query: 421 TFSSLRERISYVGQDVFLFSN-TVR-----YNILIGRPMATEEEMIEIAKSANAHDFIMS 474
F +R+++ Y Q L+ T R Y L G P + IE
Sbjct: 634 DFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLV------- 686
Query: 475 LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSR 534
G Y + SGG K+R++ A A++ D +++LDE ++ LD + ++R
Sbjct: 687 ---GLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIAR 743
Query: 535 LMQGRTTIVIAHRISTIIEA 554
L + I++ EA
Sbjct: 744 LRKNGKAIILTSHSMEEAEA 763
>gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 73.8 bits (181), Expect = 1e-13
Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 14/188 (7%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPS---SGSIEIDGINIRDIT 421
G +L+ +N G++ L+GPSG GKST+++ ++ +G + ++ +
Sbjct: 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD--M 71
Query: 422 FSSLRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYD 480
+ + +I + QD LF + +V N+L P + A+ A+ + G D
Sbjct: 72 LPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGN----ARRNAANAALERS--GLD 125
Query: 481 TYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQ-ALSRLMQ-G 538
++ + LSGGQ+ R+A+ RA+L L+LDE S LD + RQ S + G
Sbjct: 126 GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAG 185
Query: 539 RTTIVIAH 546
T+ + H
Sbjct: 186 IPTVQVTH 193
>gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 72.6 bits (178), Expect = 3e-13
Identities = 48/207 (23%), Positives = 94/207 (45%), Gaps = 14/207 (6%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427
+ I+ G++ L+GP+G+GK+T +++ + +P+ G I +G + +
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEI----KN 72
Query: 428 RISYVGQDVFLFSN-TVRYNIL-IGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGE 485
RI Y+ ++ L+ TV + + + EI K A + + +
Sbjct: 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKA--EIQKKLQAWLERLEIVG----KKTK 126
Query: 486 NGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM-QGRTTIVI 544
LS G +Q+I A++ + +L+LDE S LD L++ A+ L +G T I
Sbjct: 127 KIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFS 186
Query: 545 AHRISTIIE-ADHIIFIEDGKVSESGD 570
+HR+ + E D ++ ++ G+ G
Sbjct: 187 SHRMEHVEELCDRLLMLKKGQTVLYGT 213
>gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 72.2 bits (177), Expect = 3e-13
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 21/185 (11%)
Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLR 426
+ S ++ +G+ + GP+G+GK+T++ +L + P +G + G I+++ S
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYH 74
Query: 427 ERISYVG-QDVFLFSNTVRYNILIGRPM--ATEEEMIEIAKSANAHDFIMSLPQGYDTYV 483
+ + Y+G Q T N+ + + I A + + LP G
Sbjct: 75 QALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQ---- 130
Query: 484 GENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTT-- 541
LS GQ++R+A+AR L + +LDE +ALD L+ LM
Sbjct: 131 ------LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEG----VALLTALMAAHAAQG 180
Query: 542 -IVIA 545
IV+
Sbjct: 181 GIVLL 185
>gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR)
family of ATP-binding cassette (ABC) transporters. PDR
is a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide-binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 202
Score = 72.2 bits (177), Expect = 4e-13
Identities = 48/215 (22%), Positives = 85/215 (39%), Gaps = 37/215 (17%)
Query: 363 KQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLL---MRMYDPSSGSIEIDGINIRD 419
+ P+L + K G+M ++G GSG ST++ L G I +GI
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPY-K 75
Query: 420 ITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGY 479
I YV ++ F P T E ++ A ++F+
Sbjct: 76 EFAEKYPGEIIYVSEEDVHF------------PTLTVRETLDFALRCKGNEFV------- 116
Query: 480 DTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM--- 536
+SGG+++R++IA A++ +L D +T LD+ T + + + R M
Sbjct: 117 --------RGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCI-RTMADV 167
Query: 537 QGRTTIVIAHRISTIIEA--DHIIFIEDGKVSESG 569
TT V ++ S I D ++ + +G+ G
Sbjct: 168 LKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
>gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the
ATPase component of a bacterial ABC-type Na+ transport
system called NatAB, which catalyzes ATP-dependent
electrogenic Na+ extrusion without mechanically coupled
to proton or K+ uptake. NatB possess six putative
membrane spanning regions at its C-terminus. In B.
subtilis, NatAB is inducible by agents such as ethanol
and protonophores, which lower the protonmotive force
across the membrane. The closest sequence similarity to
NatA is exhibited by DrrA of the two-component
daunomycin- and doxorubicin-efflux system. Hence, the
functional NatAB is presumably assembled with two copies
of the single ATP-binding protein and the single
intergral membrane protein..
Length = 236
Score = 72.2 bits (177), Expect = 4e-13
Identities = 49/220 (22%), Positives = 97/220 (44%), Gaps = 21/220 (9%)
Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI 415
+ +F + L GI+ + G++ +GP+G+GK+T + +L + P+SG + + G
Sbjct: 24 KSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG- 82
Query: 416 NIRDITFSSLRERISYVGQDVFLFS--NTVRYNILIGRPMATEEEMIEIAKSANAHDF-- 471
+ R ++ + +F + +++ + + ++ +
Sbjct: 83 ------LVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDE 136
Query: 472 ---IMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528
++ L + DT V LS GQ+ R IA A+L + IL LDE T LD + +
Sbjct: 137 LSELLDLEELLDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192
Query: 529 RQALSRLMQGRTTIVI--AHRISTIIE-ADHIIFIEDGKV 565
R L + R T V+ +H + I A ++ I+ G++
Sbjct: 193 RNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232
>gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
In members of Carb_Monos family the single hydrophobic
gene product forms a homodimer, while the ABC protein
represents a fusion of two nucleotide-binding domains.
However, it is assumed that two copies of the ABC
domains are present in the assembled transporter..
Length = 182
Score = 71.6 bits (176), Expect = 6e-13
Identities = 42/207 (20%), Positives = 90/207 (43%), Gaps = 42/207 (20%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424
+ ++ ++G++ + G G+G++ + L + P+SG I +DG + +T S
Sbjct: 12 VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDG---KPVTRRS 68
Query: 425 LRER----ISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYD 480
R+ I+YV +D R + ++ E +
Sbjct: 69 PRDAIRAGIAYVPED--------RKREGLVLDLSVAENIA-------------------- 100
Query: 481 TYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRL-MQGR 539
S LSGG +Q++ +AR + RD +L+LDE T +D + + + + L G+
Sbjct: 101 -----LSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGK 155
Query: 540 TTIVIAHRISTIIE-ADHIIFIEDGKV 565
++I+ + ++ D I+ + +G++
Sbjct: 156 AVLLISSELDELLGLCDRILVMYEGRI 182
>gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 71.1 bits (174), Expect = 8e-13
Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 27/178 (15%)
Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI-------DGINIRD 419
PVL ++L +G+ L GPSGSGKST++ L Y P G I + D +
Sbjct: 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84
Query: 420 ITFSSLRER-ISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSA--------NAHD 470
+R I YV Q + + ++ + P+ E+A++ N +
Sbjct: 85 REVLEVRRTTIGYVSQFLRVIPRVSALDV-VAEPLLARGVPREVARAKAADLLTRLNLPE 143
Query: 471 FIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528
+ SL + SGG++QR+ IAR + D IL+LDE T++LD +V
Sbjct: 144 RLWSLAP----------ATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVV 191
>gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like
(PDR) family of ATP-binding cassette (ABC) transporters.
PDR is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 192
Score = 70.6 bits (173), Expect = 1e-12
Identities = 50/207 (24%), Positives = 84/207 (40%), Gaps = 44/207 (21%)
Query: 363 KQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPS--SGSIEIDGINIRDI 420
+L+ I+ K G +TAL+G SG+GK+T++++L +G I I+G +
Sbjct: 17 GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDK- 75
Query: 421 TFSSLRERISYVGQ-DVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGY 479
+ + YV Q DV + TVR + SA
Sbjct: 76 ---NFQRSTGYVEQQDVHSPNLTVREALRF---------------SALLRG--------- 108
Query: 480 DTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRL-MQG 538
LS Q++R+ I + IL LDE TS LD+ + + L +L G
Sbjct: 109 ----------LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSG 158
Query: 539 RTTIVIAHRISTII--EADHIIFIEDG 563
+ + H+ S I + D ++ ++ G
Sbjct: 159 QAILCTIHQPSASIFEKFDRLLLLKRG 185
>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity of more than 48%. The high degree of
evolutionary conservation suggests that RLI performs a
central role in archaeal and eukaryotic physiology..
Length = 246
Score = 68.8 bits (168), Expect = 4e-12
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 32/201 (15%)
Query: 376 FKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQD 435
++ ++GP+G GK+T I +L + P G IEI+ + +SY Q
Sbjct: 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIE------------LDTVSYKPQ- 68
Query: 436 VFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDF----IMSLPQGYDTYVGENGSNLS 491
I + + I K H + I P + + LS
Sbjct: 69 ----------YIKADYEGTVRDLLSSITKDFYTHPYFKTEIAK-PLQIEQILDREVPELS 117
Query: 492 GGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQG--RTTIVIAHRIS 549
GG+ QR+AIA + +D I +LDE ++ LD + + + R + +T V+ H I
Sbjct: 118 GGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDII 177
Query: 550 TI-IEADHIIFIEDGKVSESG 569
I AD +I + +G+ S +G
Sbjct: 178 MIDYLADRLI-VFEGEPSVNG 197
>gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 68.7 bits (168), Expect = 4e-12
Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 32/200 (16%)
Query: 376 FKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQD 435
G++ ++GP+G GK+T + LL + P GS E ++SY Q
Sbjct: 364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEE--------------DLKVSYKPQY 409
Query: 436 VFL-FSNTVRYNILIGRPMATEEEMI--EIAKSANAHDFIMSLPQGYDTYVGENGSNLSG 492
+ + TV + A EI K ++L + V E LSG
Sbjct: 410 ISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKP-------LNLEDLLERPVDE----LSG 458
Query: 493 GQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGR--TTIVIAHRIST 550
G+ QR+AIA A+ R+ + +LDE ++ LD +V + + R ++ T +V+ H I
Sbjct: 459 GELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYM 518
Query: 551 I-IEADHIIFIEDGKVSESG 569
I +D +I E G+ + G
Sbjct: 519 IDYVSDRLIVFE-GEPGKHG 537
Score = 64.8 bits (158), Expect = 6e-11
Identities = 59/230 (25%), Positives = 104/230 (45%), Gaps = 18/230 (7%)
Query: 344 VNLPVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMY 403
VNLP + +V Y L + + GK+ ++GP+G GKST + +L
Sbjct: 70 VNLP----EELEEEVVHRYGVNGFKLYRLPTP-RPGKVVGILGPNGIGKSTALKILAGEL 124
Query: 404 DPSSGSIE----IDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEM 459
P+ G E D + I+ + L+ + + + +Y LI P + ++
Sbjct: 125 KPNLGRYEDPPSWDEV-IKRFRGTELQNYFKKLYEGELRAVHKPQYVDLI--PKVVKGKV 181
Query: 460 IEIAKSANAHDFIMSLPQ--GYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEAT 517
E+ K + + + G + + + S LSGG+ QR+AIA A+LRD + DE +
Sbjct: 182 GELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPS 241
Query: 518 SALDTHTENLVRQALSRLMQ-GRTTIVIAHRISTI-IEAD--HIIFIEDG 563
S LD + + L + G+ IV+ H ++ + +D HI++ E G
Sbjct: 242 SYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYGEPG 291
>gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily)
[General function prediction only].
Length = 614
Score = 68.4 bits (167), Expect = 5e-12
Identities = 48/232 (20%), Positives = 91/232 (39%), Gaps = 38/232 (16%)
Query: 347 PVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPS 406
+ + ++V F Y + +N ALVGP+G+GKST++ L+ P+
Sbjct: 384 KIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT 443
Query: 407 SGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSA 466
G + ++ Q + ++ E M+
Sbjct: 444 IGMVS-----------RHSHNKLPRYNQ---------HLAEQLDLDKSSLEFMMPKFPDE 483
Query: 467 NAHDFIMSLPQGYDTYVGENG----------SNLSGGQKQRIAIARAMLRDGHILVLDEA 516
+ + S +G G S LS GQ++R+ AR ++ H+L+LDE
Sbjct: 484 KELEEMRS-------ILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEP 536
Query: 517 TSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSES 568
T+ LD T + + +A++ G + R+ + + A+ I E+G V++
Sbjct: 537 TNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQV-AEEIWVCENGTVTKW 587
Score = 55.7 bits (134), Expect = 3e-08
Identities = 51/238 (21%), Positives = 92/238 (38%), Gaps = 24/238 (10%)
Query: 344 VNLPVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMY 403
V + G ++ + L G+ L+GP+GSGKST + +
Sbjct: 66 NLFSHPISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGRE 125
Query: 404 DPSSGSIEI------------DGINIRDITFSSLRERISYVGQDVFLFS---NTVRYNIL 448
P I+ + + R+R+ Y+ +D+ + L
Sbjct: 126 VPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDEL 185
Query: 449 IGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDG 508
R + + E AK+A + L + D V +LSGG + R A+ARA+ +
Sbjct: 186 YERLDEMDNDTFE-AKAAKILHGLGFLSEMQDKKV----KDLSGGWRMRAALARALFQKP 240
Query: 509 HILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEA--DHIIFIEDGK 564
+L+LDE T+ LD + + L++ R +VI + +II +++ K
Sbjct: 241 DLLLLDEPTNHLDLEAIVWLEEYLAKYD--RIILVIVSHSQDFLNGVCTNIIHLDNKK 296
>gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of
the bacterial CcmAB transporter. The CCM family is
involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperone
that binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE..
Length = 201
Score = 67.3 bits (164), Expect = 1e-11
Identities = 43/196 (21%), Positives = 86/196 (43%), Gaps = 13/196 (6%)
Query: 363 KQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITF 422
+ G + SG++ +G+ + GP+GSGK+T++ +L + P +G + ++G + D
Sbjct: 10 RDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPL-DFQR 68
Query: 423 SSLRERISYVG-QDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDT 481
S+ + Y+G + +V N+ ++E++ E + F P
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF-EDRPVAQ-- 125
Query: 482 YVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTT 541
LS GQ++R+A+AR +L + +LDE T+ALD +A++
Sbjct: 126 --------LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGM 177
Query: 542 IVIAHRISTIIEADHI 557
+V+ +
Sbjct: 178 VVLTTHQDLGLSEAGA 193
>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II;
Nucleotide excision repair in eubacteria is a process
that repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep ATP-dependent
reaction that requires the UvrA, UvrB, and UvrC
proteins. Both UvrA and UvrB are ATPases, with UvrA
having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins
and UvrB having one ATP binding site that is
structurally related to that of helicases..
Length = 261
Score = 67.1 bits (164), Expect = 1e-11
Identities = 67/234 (28%), Positives = 99/234 (42%), Gaps = 46/234 (19%)
Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIIN--LLMRMYDPSSGSIEIDGINIRDITFSSLR 426
L I++ G +T + G SGSGKS++IN L + E G N I
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPG-NHDRIEGLEHI 69
Query: 427 ERISYVGQD---------------VF-----LFS---NTVRYN------ILIGRPMA--- 454
+++ + Q VF LF RYN G+ +A
Sbjct: 70 DKVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVL 129
Query: 455 --TEEEMIE----IAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLR-- 506
T EE +E I K A + + GY +G+ + LSGG+ QRI +A+ + +
Sbjct: 130 DMTVEEALEFFENIPKIARKLQTLCDVGLGYIK-LGQPATTLSGGEAQRIKLAKELSKRS 188
Query: 507 DGHIL-VLDEATSALDTHTENLVRQALSRLM-QGRTTIVIAHRISTIIEADHII 558
G L +LDE T+ L H + + L RL+ +G T +VI H + I AD II
Sbjct: 189 TGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWII 242
>gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters
with duplicated ATPase domains/Translation elongation
factor EF-3b [Amino acid transport and metabolism,
Translation, ribosomal structure and biogenesis].
Length = 582
Score = 65.0 bits (158), Expect = 5e-11
Identities = 58/238 (24%), Positives = 91/238 (38%), Gaps = 54/238 (22%)
Query: 355 FRDVFFSYKQGHP-VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEID 413
V F Y + L +S + VG +G GKST++ +L P+ G +
Sbjct: 365 ISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRH 424
Query: 414 GINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIM 473
R RI Y + + + K+ NA DF+
Sbjct: 425 P-----------RLRIKY----------------------FAQHHVDFLDKNVNAVDFME 451
Query: 474 SL-----PQGYDTYVGENG----------SNLSGGQKQRIAIARAMLRDGHILVLDEATS 518
+ ++G G ++LSGGQK R+A A + H+LVLDE T+
Sbjct: 452 KSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTN 511
Query: 519 ALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEA-DHIIFIEDGKVS--ESGDQKY 573
LD + + +AL G ++++H I + +EDGKV+ E G KY
Sbjct: 512 HLDRDSLGALAKALKNFNGG--VVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDKY 567
Score = 63.8 bits (155), Expect = 1e-10
Identities = 46/199 (23%), Positives = 80/199 (40%), Gaps = 22/199 (11%)
Query: 349 GKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSG 408
GK + D F G +L+ NL G+ LVG +G GKST L+R
Sbjct: 76 GKSKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKST----LLRAI----A 127
Query: 409 SIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANA 468
+ ++ G ++ +R + Q V + + + + EI
Sbjct: 128 NGQVSGFHVEQ----EVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKI-- 181
Query: 469 HDFIMSLPQGYDTYVGENGSN-LSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527
+ L G+ + + LSGG + R+A+ARA+ +L+LDE T+ LD
Sbjct: 182 ---LAGL--GFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAW 236
Query: 528 VRQALSRLMQGRTTIVIAH 546
+ L T+++++H
Sbjct: 237 LENYLQT--WKITSLIVSH 253
>gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC
superfamily (involved in peroxisome organization and
biogenesis) [Lipid transport and metabolism, General
function prediction only].
Length = 659
Score = 63.4 bits (154), Expect = 2e-10
Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 29/198 (14%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI-NIRDITF- 422
G ++ ++L SG+ + GPSG GK++++ +L ++ + G + +D+ F
Sbjct: 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFL 506
Query: 423 --------SSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMS 474
+LR+++ Y + + S + + ++E + + ++
Sbjct: 507 PQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDI--------LRILENVQLGH----LLE 554
Query: 475 LPQGYDTYVGEN-GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALS 533
G D V + LS G++QR+A AR +LDE TSA+ E AL
Sbjct: 555 REGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEG----ALY 610
Query: 534 RLMQ--GRTTIVIAHRIS 549
R + G T I + HR S
Sbjct: 611 RKCREMGITFISVGHRKS 628
>gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 62.7 bits (152), Expect = 2e-10
Identities = 61/231 (26%), Positives = 97/231 (41%), Gaps = 37/231 (16%)
Query: 355 FRDVFFSYKQGH-----PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMR-------- 401
F+D+ S+ VL +NL K G + A+VG SG+GK+T++ +++
Sbjct: 380 FQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEE 439
Query: 402 MYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIE 461
Y P SG +E+ + + V L S T G A E
Sbjct: 440 KYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKT-------GDLNAAVE---- 488
Query: 462 IAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD 521
I A D ++ Y E LS GQK+R +A+ + ++L++DE + LD
Sbjct: 489 ILNRAGLSDAVL-----YRRKFSE----LSTGQKERAKLAKLLAERPNVLLIDEFAAHLD 539
Query: 522 THTENLVRQALSRLMQ--GRTTIVIAHRISTI--IEADHIIFIEDGKVSES 568
T V + +S L + G T IV+ HR + D +I + GKV +
Sbjct: 540 ELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVPVN 590
>gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI s are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLIs have an N-terminal
Fe-S domain and two nucleotide binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 255
Score = 62.2 bits (151), Expect = 4e-10
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 10/182 (5%)
Query: 377 KSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSI----EIDGINIRDITFSSLRERISYV 432
+ G++ LVGP+G GKST + +L P+ G + D I + + S L+ + +
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEI-LDEFRGSELQNYFTKL 82
Query: 433 GQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQ--GYDTYVGENGSNL 490
+ +Y LI P A + ++ E+ K + + L + N L
Sbjct: 83 LEGDVKVIVKPQYVDLI--PKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQL 140
Query: 491 SGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ-GRTTIVIAHRIS 549
SGG+ QR+AIA A+ RD DE +S LD + + L + +V+ H ++
Sbjct: 141 SGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA 200
Query: 550 TI 551
+
Sbjct: 201 VL 202
>gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 62.0 bits (151), Expect = 5e-10
Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 33/226 (14%)
Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLM--RMYDPSSGSIEIDGINIRDITFSS 424
+L G+NL G++ A++GP+GSGKST+ ++ Y G I G +I D+
Sbjct: 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLE--- 77
Query: 425 LRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIA-----KSANAHDF-------- 471
E +++G +FL +Y I I P + + + +A K +
Sbjct: 78 -PEERAHLG--IFL---AFQYPIEI--PGVSNADFLRLAYNSKRKFQGLPELDPLEFLEI 129
Query: 472 ---IMSLPQGYDTYVGEN-GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527
+ L +++ N SGG+K+R I + L D + +LDE S LD +
Sbjct: 130 INEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKI 189
Query: 528 VRQALSRLM-QGRTTIVIAH--RISTIIEADHIIFIEDGKVSESGD 570
+ + +++LM + I+I H R+ I+ D++ +++GK+ ++GD
Sbjct: 190 IAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235
>gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC
superfamily) [Translation, ribosomal structure and
biogenesis].
Length = 807
Score = 61.7 bits (149), Expect = 6e-10
Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 44/223 (19%)
Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGIN 416
DV F Y P+ ++ A+VGP+G GKST++ LL+ DP+ G +
Sbjct: 591 DVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELR----- 645
Query: 417 IRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLP 476
+ +G ++ + EE +E + +LP
Sbjct: 646 ---------KNHRLRIG----------WFDQHANEALNGEETPVEYLQRK------FNLP 680
Query: 477 -QGYDTYVGENG----------SNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTE 525
Q +G G +LSGGQK R+A+A L +L+LDE T+ LD +
Sbjct: 681 YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESI 740
Query: 526 NLVRQALSRLMQGRTTIVIAHRISTIIEAD-HIIFIEDGKVSE 567
+ + +A++ G I+++H I+E D ++ +E+ + E
Sbjct: 741 DALAEAINEYNGG--VIMVSHDERLIVETDCNLWVVENQGIDE 781
Score = 47.4 bits (112), Expect = 1e-05
Identities = 58/247 (23%), Positives = 112/247 (45%), Gaps = 27/247 (10%)
Query: 364 QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLL--MRMYDPSS-------GSIEIDG 414
QG + +L G+ LVGP+G GK+T++ + + P + + D
Sbjct: 275 QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADS 334
Query: 415 INIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMA-TEEEMIEI-AKSANAHDFI 472
+ D + ++R++ + ++ L S + + +E+ I A SA A
Sbjct: 335 TSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARR 394
Query: 473 MSLPQGYDTYVGENGSN-LSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQA 531
+ G+ + E + SGG + R+++ARA+ + +L+LDE T+ LD N V
Sbjct: 395 ILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDL---NAVIW- 450
Query: 532 LSRLMQG--RTTIVIAHRISTIIEA-DHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYA 588
L +QG +T ++++H + II ++ +QK + + +L+KKMYA
Sbjct: 451 LDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLD--------NQKLHYYRGNYTLFKKMYA 502
Query: 589 SQLLENL 595
++ E+
Sbjct: 503 QKMQEHE 509
>gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 61.4 bits (149), Expect = 6e-10
Identities = 58/228 (25%), Positives = 96/228 (42%), Gaps = 37/228 (16%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424
G L+ ++ G++ L+GP+G+GK+T+++++ P G + DG D +
Sbjct: 17 GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG----DTDLTK 72
Query: 425 LRE-RISYVG-----QDVFLFSN-TVRYNI-------------LIGRPMATEEEMIEIAK 464
L E RI+ G Q +F N TVR N+ L R A E I+
Sbjct: 73 LPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRID--- 129
Query: 465 SANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSAL-DTH 523
I + + LS GQKQ + I + +D +L+LDE + + D
Sbjct: 130 --ELLATIGLGDERDRL-----AALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAE 182
Query: 524 TENLVRQALSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570
TE + L L + +V+ H + + E AD + + +G V G
Sbjct: 183 TEK-TAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGS 229
>gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase
component/CCR4 associated factor [General function
prediction only, Transcription].
Length = 291
Score = 61.2 bits (148), Expect = 7e-10
Identities = 55/232 (23%), Positives = 96/232 (41%), Gaps = 18/232 (7%)
Query: 348 VGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSS 407
V + F YK P+ NL +G LVG +G+GK+T++ +L +
Sbjct: 9 VSDFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGG 68
Query: 408 GSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSAN 467
G +++ G + T +SY+G + +S TV + P+ + +
Sbjct: 69 GVVQVLGRSAFHDTSLESSGDLSYLGGE---WSKTVGIAGEV--PLQGDISAEHMIFGVG 123
Query: 468 AHDFIMS--LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTE 525
D L D + +S GQ++R+ I +L+ +L+LDE T LD
Sbjct: 124 GDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDV--- 180
Query: 526 NLVRQALSRLMQGRT-----TIVIAHRISTIIE--ADHIIFIEDGKVSESGD 570
L R L ++ TIV A I +E H+++I+ GK+ ++
Sbjct: 181 -LARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLK 231
>gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA
transporter, ABC superfamily [Lipid transport and
metabolism].
Length = 728
Score = 58.8 bits (142), Expect = 4e-09
Identities = 48/203 (23%), Positives = 85/203 (41%), Gaps = 26/203 (12%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424
G ++ + + G + GP+G GKS++ +L ++ +G + I
Sbjct: 494 GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI-----------P 542
Query: 425 LRERISYVGQDVFLFSNTVRYNILIGRPMATEE---------EMIEIAKSANAHDFIMSL 475
I Y+ Q ++ T+R I+ P ++E+ ++ I + I+
Sbjct: 543 RPNNIFYIPQRPYMSGGTLRDQIIY--PDSSEQMKRKGYTDQDLEAILDIVHLE-HILQR 599
Query: 476 PQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRL 535
G+D V + LSGG+KQR+ +AR +LDE TSA+ E + QA
Sbjct: 600 EGGWDA-VRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA 658
Query: 536 MQGRTTIVIAHRISTIIEADHII 558
G + + I HR S H++
Sbjct: 659 --GISLLSITHRPSLWKYHTHLL 679
>gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions..
Length = 144
Score = 57.8 bits (140), Expect = 8e-09
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 490 LSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHR-- 547
LSGG+K R+A+A+ +L + ++L+LDE T+ LD + + +AL T I+++H
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRY 128
Query: 548 -ISTIIEADHIIFIEDGK 564
+ + A II +EDGK
Sbjct: 129 FLDQV--ATKIIELEDGK 144
Score = 48.5 bits (116), Expect = 5e-06
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 12/80 (15%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
++ +Y G +L I+L G LVG +G+GKST++ L+ +P G +
Sbjct: 3 LENLSKTYG-GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS 61
Query: 415 INIRDITFSSLRERISYVGQ 434
+I Y Q
Sbjct: 62 -----------TVKIGYFEQ 70
>gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 57.7 bits (139), Expect = 8e-09
Identities = 56/240 (23%), Positives = 99/240 (41%), Gaps = 42/240 (17%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSL-- 425
+ +++ G++ LVG SGSGKS I + + + + D + DI L
Sbjct: 22 AVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK-DNWRVTADRMRFDDIDLLRLSP 80
Query: 426 RERISYVGQDVFLF----------SNTVRYNILIGRPMATEE---------------EMI 460
RER VG +V + S V ++ P T + E++
Sbjct: 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELL 140
Query: 461 EIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSAL 520
+ D + S P L+ G+ Q++ IA A+ +L+ DE T+++
Sbjct: 141 HRVGIKDHKDIMRSYPY-----------ELTEGECQKVMIAIALANQPRLLIADEPTNSM 189
Query: 521 DTHTENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQ 577
+ T+ + + LSRL Q T ++I+H + I + AD I + G+ ES + L+
Sbjct: 190 EPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTM 249
>gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 55.6 bits (134), Expect = 4e-08
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 483 VGENGSNLSGGQKQRIAIARAMLRDGH---ILVLDEATSALDTHTENLVRQALSRLM-QG 538
+G+ + LSGG+ QR+ +A+ + + + +LDE T+ L + + L RL+ +G
Sbjct: 816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKG 875
Query: 539 RTTIVIAHRISTIIEADHII 558
T IVI H + I AD II
Sbjct: 876 NTVIVIEHNLDVIKTADWII 895
Score = 50.6 bits (121), Expect = 1e-06
Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 31/188 (16%)
Query: 405 PSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMI--EI 462
P + +++I G NI +I+ S+ + + + ++ +E+ I I
Sbjct: 411 PEALAVKIAGKNIAEISEMSIADALEF----------------FENLKLSEKEKKIAEPI 454
Query: 463 AKSANAH-DFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAM---LRDGHILVLDEATS 518
K F++ + GY T + + LSGG+ QRI +A + L G + VLDE +
Sbjct: 455 LKEIKERLGFLVDVGLGYLT-LSRSAGTLSGGEAQRIRLATQIGSGL-TGVLYVLDEPSI 512
Query: 519 ALDTHTENLVRQALSRLM-QGRTTIVIAHRISTIIEADHIIFI------EDGKVSESGDQ 571
L + + L RL G T IV+ H TI ADHII I G++ G
Sbjct: 513 GLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTP 572
Query: 572 KYLLQQKD 579
+ LL +
Sbjct: 573 EELLANPE 580
Score = 37.8 bits (88), Expect = 0.008
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIIN 397
L I++ G T + G SGSGKST+IN
Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKSTLIN 645
Score = 30.5 bits (69), Expect = 1.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTI 395
L I+L K+ + G SGSGKS++
Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSL 42
>gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 53.4 bits (128), Expect = 2e-07
Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 20/207 (9%)
Query: 379 GKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEID--GINIRDITFSSLRERISYVGQDV 436
G++ +VG SGSGK+T++ + P +G++ RD+ S ER + +
Sbjct: 32 GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEW 91
Query: 437 -FLFSNT---VRYNILIG-----RPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENG 487
F+ N +R + G R MA + A A D++ + D + +
Sbjct: 92 GFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIR-AEAQDWLEEVEIDLDR-IDDLP 149
Query: 488 SNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTE----NLVRQALSRLMQGRTTIV 543
SGG +QR+ IAR ++ ++ +DE T LD + +L+R + L G ++
Sbjct: 150 RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL--GLAVVI 207
Query: 544 IAHRISTI-IEADHIIFIEDGKVSESG 569
+ H ++ + AD ++ ++ G+V ESG
Sbjct: 208 VTHDLAVARLLADRLMVMKQGQVVESG 234
>gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide
excision repair in eubacteria is a process that repairs
DNA damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins, and UvrB having one ATP binding
site that is structurally related to that of helicases..
Length = 176
Score = 52.9 bits (127), Expect = 2e-07
Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 47/195 (24%)
Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRER 428
L +++ + + G SGSGKST++N + ++S + R
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVN---------------------EGLYASGKAR 49
Query: 429 ISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGS 488
+ P + ++I I + F++ + GY T +G+ S
Sbjct: 50 LIS------------------FLPKFSRNKLIFIDQLQ----FLIDVGLGYLT-LGQKLS 86
Query: 489 NLSGGQKQRIAIARAMLRDGH--ILVLDEATSALDTHTENLVRQALSRLM-QGRTTIVIA 545
LSGG+ QR+ +A + + + +LDE ++ L N + + + L+ G T I+I
Sbjct: 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIE 146
Query: 546 HRISTIIEADHIIFI 560
H + + AD II
Sbjct: 147 HNLDVLSSADWIIDF 161
>gnl|CDD|73037 cd03278, ABC_SMC_barmotin, Barmotin is a tight junction-associated
protein expressed in rat epithelial cells which is
thought to have an important regulatory role in tight
junction barrier function. Barmotin belongs to the SMC
protein family. SMC proteins are large (approximately
110 to 170 kDa), and each is arranged into five
recognizable domains. Amino-acid sequence homology of
SMC proteins between species is largely confined to the
amino- and carboxy-terminal globular domains. The
amino-terminal domain contains a 'Walker A'
nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 197
Score = 52.0 bits (125), Expect = 5e-07
Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 28/189 (14%)
Query: 376 FKSGKMTALVGPSGSGKSTIIN-LLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQ 434
F G +TA+VGP+GSGKS II+ + + + S+ S+ + ++ D+ F+ R
Sbjct: 20 FPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMS--DVIFAGSETRKPANFA 76
Query: 435 DVFL-FSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGG 493
+V L F N+ +I + +E I ++ +SL LSGG
Sbjct: 77 EVTLTFDNSDGRYSIISQGDVSE-----IIEAPGKKVQRLSL--------------LSGG 117
Query: 494 QKQRIAI----ARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRIS 549
+K A+ A +R VLDE +ALD + L + IVI HR
Sbjct: 118 EKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKG 177
Query: 550 TIIEADHII 558
T+ AD +
Sbjct: 178 TMEAADRLY 186
>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to
the ATP-binding cassette of ABC transporters, but are
not associated with membrane-spanning domains. The
conserved ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence..
Length = 204
Score = 51.4 bits (123), Expect = 7e-07
Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 35/199 (17%)
Query: 376 FKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQD 435
F S +T +VG +G+GK+TII L G + + E + V
Sbjct: 20 FFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREG--EVRAQV--- 73
Query: 436 VFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQG-YDTYVGENGSNLSGGQ 494
+ + G+ I +S + ++ QG + + + SGG+
Sbjct: 74 ------KLAFENANGKKY-------TITRSLAILENVIFCHQGESNWPLLDMRGRCSGGE 120
Query: 495 KQ------RIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTT------I 542
K R+A+A + IL LDE T+ LD E + ++L+ +++ R + I
Sbjct: 121 KVLASLIIRLALAETFGSNCGILALDEPTTNLD---EENIEESLAEIIEERKSQKNFQLI 177
Query: 543 VIAHRISTIIEADHIIFIE 561
VI H + ADHI +E
Sbjct: 178 VITHDEELVDAADHIYRVE 196
>gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I;
Nucleotide excision repair in eubacteria is a process
that repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep ATP-dependent
reaction that requires the UvrA, UvrB, and UvrC
proteins. Both UvrA and UvrB are ATPases, with UvrA
having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases..
Length = 226
Score = 47.5 bits (113), Expect = 1e-05
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 470 DFIMSLPQGYDTYVGENGSNLSGGQKQRIAIAR--AMLRDGHILVLDEATSALDTHTENL 527
F++ + GY T + + LSGG+ QRI +A G + VLDE + L +
Sbjct: 119 GFLVDVGLGYLT-LSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDR 177
Query: 528 VRQALSRLM-QGRTTIVIAHRISTIIEADHII 558
+ + L RL G T +V+ H TI ADH+I
Sbjct: 178 LIETLKRLRDLGNTVLVVEHDEDTIRAADHVI 209
>gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor
(RLI) is a key enzyme in ribosomal biogenesis, formation
of translation preinitiation complexes, and assembly of
HIV capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 177
Score = 46.9 bits (111), Expect = 2e-05
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 489 NLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--GRTTIVIAH 546
+LSGG+ QR+AIA A+LR+ + DE ++ LD +A+ RL + +T +V+ H
Sbjct: 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130
Query: 547 RISTIIEADHIIFIEDGKVSESG 569
++ + I + +G+ G
Sbjct: 131 DLAVLDYLSDRIHVFEGEPGVYG 153
Score = 39.2 bits (91), Expect = 0.003
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 376 FKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINI 417
K G++ +VGP+G+GK+T + +L P+ + E DGI
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP 63
>gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA
processing and modification].
Length = 592
Score = 46.4 bits (110), Expect = 2e-05
Identities = 48/200 (24%), Positives = 82/200 (41%), Gaps = 37/200 (18%)
Query: 374 LCFKSGKMT-----ALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRER 428
LC K G+ + ++G +G+GK+T I +L P G EI +N+
Sbjct: 357 LCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG-EIPVLNV----------- 404
Query: 429 ISYVGQDVF-LFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMS---LPQGYDTYVG 484
SY Q + TVR I + A H ++ P + +
Sbjct: 405 -SYKPQKISPKREGTVRQ---------LLHTKI---RDAYMHPQFVNDVMKPLQIENIID 451
Query: 485 ENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSR--LMQGRTTI 542
+ LSGG+ QR+A+A + + + ++DE ++ LD+ + + + R L +T
Sbjct: 452 QEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAF 511
Query: 543 VIAHR-ISTIIEADHIIFIE 561
V+ H I AD +I E
Sbjct: 512 VVEHDFIMATYLADRVIVFE 531
Score = 39.9 bits (93), Expect = 0.002
Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 24/189 (12%)
Query: 377 KSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITF---SSLRERISYVG 433
+ G++ LVG +G GKST + +L P+ G + +T+ S L+ + +
Sbjct: 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKIL 157
Query: 434 QDVFLFSNTVRYNILIGRPM-ATEEEMIEIAKSANAHDFI---MSLPQGYDTYVGENGSN 489
+D +Y I R + T +++ + + + + L D V +
Sbjct: 158 EDNLKAIIKPQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQ---- 213
Query: 490 LSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL-------SRLMQGRTTI 542
LSGG+ QR AIA ++ + + DE +S LD V+Q L S + R I
Sbjct: 214 LSGGELQRFAIAMVCVQKADVYMFDEPSSYLD------VKQRLKAAITIRSLINPDRYII 267
Query: 543 VIAHRISTI 551
V+ H +S +
Sbjct: 268 VVEHDLSVL 276
>gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterised by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins..
Length = 162
Score = 43.8 bits (103), Expect = 1e-04
Identities = 42/195 (21%), Positives = 63/195 (32%), Gaps = 69/195 (35%)
Query: 376 FKSGKMTALVGPSGSGKSTIIN-----LLMRMYDPSSGSIEIDGINIRDITFSSLRERIS 430
F G +T + GP+GSGKSTI++ L S G + ++
Sbjct: 18 FGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSA-------- 69
Query: 431 YVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNL 490
+ I + Q L
Sbjct: 70 ---------------------------------------ELIFTRLQ------------L 78
Query: 491 SGGQKQRIAIARAM----LRDGHILVLDEATSALDT-HTENLVRQALSRLMQGRTTIVIA 545
SGG+K+ A+A + L+ + +LDE LD + L L L++G IVI
Sbjct: 79 SGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVIT 138
Query: 546 HRISTIIEADHIIFI 560
H AD +I I
Sbjct: 139 HLPELAELADKLIHI 153
>gnl|CDD|146027 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 41.8 bits (99), Expect = 5e-04
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 378 SGKMTALVGPSGSGKSTIINLL 399
GK + L G SG GKST++N L
Sbjct: 34 KGKTSVLAGQSGVGKSTLLNAL 55
>gnl|CDD|31389 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 40.4 bits (94), Expect = 0.001
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 8/118 (6%)
Query: 445 YNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAI---- 500
+ L G A E E+ E A I + P G ++ S LSGG+K A+
Sbjct: 1026 FKELFGGGTA-ELELTEPDDPLTAGIEISARPPGKKL---QSLSLLSGGEKSLTALALLF 1081
Query: 501 ARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHII 558
A R VLDE +ALD V + + + + IVI HR T+ AD ++
Sbjct: 1082 AIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVITHRKGTMEAADRLV 1139
Score = 31.9 bits (72), Expect = 0.46
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 381 MTALVGPSGSGKSTII 396
TA+VGP+GSGKS I+
Sbjct: 26 FTAIVGPNGSGKSNIV 41
>gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are
implicated in the metabolism of DNA ends. They cleave
ends sealed by hairpin structures and are thought to
play a role in removing protein bound to DNA termini..
Length = 213
Score = 40.2 bits (94), Expect = 0.002
Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 36/194 (18%)
Query: 381 MTALVGPSGSGKSTIIN-LLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLF 439
+ + GP+G+GKSTI++ + +Y + G + + E + V F F
Sbjct: 30 LFLICGPTGAGKSTILDAITYALYGKTPR----YGRQENLRSVFAPGEDTAEV---SFTF 82
Query: 440 SNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQG-YDTYVGENGSNLSGGQKQRI 498
+ + ++ I+ LPQG +D ++ S LSGG+
Sbjct: 83 QLGGKKYRVERSRGLDYDQFTR----------IVLLPQGEFDRFLARPVSTLSGGETFLA 132
Query: 499 AIARAM-------LRDG---HILVLDEATSALDTHTENLVRQALSRLMQ-GRTTIVIAH- 546
+++ A+ R G L +DE LD V AL + R VI+H
Sbjct: 133 SLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHV 192
Query: 547 -----RISTIIEAD 555
RI +E
Sbjct: 193 EELKERIPQRLEVI 206
>gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 40.0 bits (93), Expect = 0.002
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 479 YDTYVGENGSNLSGGQKQ------RIAIARAMLRDGHI--LVLDEATSALDTHTENLVRQ 530
YD LSGG++ R+A++ + + L LDE LD + +
Sbjct: 805 YDGGEVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAE 864
Query: 531 ALSRL-MQGRTTIVIAHRISTIIEADHIIFIE 561
L L GR I+I+H AD I ++
Sbjct: 865 ILEELLSDGRQIIIISHVEELKERADVRIRVK 896
Score = 30.0 bits (67), Expect = 2.1
Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 372 INLCFKSGKMTALVGPSGSGKSTIIN 397
I F SG + +VGP+G+GKS+I++
Sbjct: 19 IEKLFDSG-IFLIVGPNGAGKSSILD 43
>gnl|CDD|73180 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines..
Length = 137
Score = 40.1 bits (94), Expect = 0.002
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 14/66 (21%)
Query: 384 LVGPSGSGKSTIINLLMRMYDPSSG-SI----------EIDGINIRDITFSSLRERISYV 432
L GPSG GKST++ L+ +DP+ G S+ E+DG D F S E +
Sbjct: 4 LSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDG---VDYHFVSKEEFERLI 60
Query: 433 GQDVFL 438
FL
Sbjct: 61 ENGEFL 66
>gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis)
represents a protein family whose members are broadly
conserved in bacteria and have been shown to be
essential to the growth of E. coli and B. subtilis.
Proteins of the YjeQ family contain all sequence motifs
typical of the vast class of P-loop-containing GTPases,
but show a circular permutation, with a G4-G1-G3 pattern
of motifs as opposed to the regular G1-G3-G4 pattern
seen in most GTPases. All YjeQ family proteins display a
unique domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain. This domain architecture suggests a role for
YjeQ as a regulator of translation..
Length = 287
Score = 39.8 bits (93), Expect = 0.002
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 378 SGKMTALVGPSGSGKSTIINLLM 400
GK + LVG SG GKST+IN L+
Sbjct: 160 KGKTSVLVGQSGVGKSTLINALL 182
>gnl|CDD|31356 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 36.8 bits (85), Expect = 0.016
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 358 VFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLL 399
+F S K G + L +GK+T L+G SG GKST+IN L
Sbjct: 145 LFVSAKNGDGLEELAELL--AGKITVLLGQSGVGKSTLINAL 184
>gnl|CDD|145545 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 36.1 bits (83), Expect = 0.030
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 488 SNLSGGQKQRIAIA--RAMLR-DGH-ILVLDEATSALD-THTENLVR--QALSRLMQGRT 540
NLSGG+K +A+A A+ + +LDE +ALD + + + LS+ Q
Sbjct: 1077 DNLSGGEKTLVALALIFAIQKYRPAPFYLLDEIDAALDDQNVSRVANYLKELSKNAQ--- 1133
Query: 541 TIVIAHRISTIIEADHI--IFIEDGKVS 566
IVI+ R + +AD + +++ + VS
Sbjct: 1134 FIVISLREEMLEKADRLVGVYMVENGVS 1161
Score = 31.9 bits (72), Expect = 0.57
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 378 SGKMTALVGPSGSGKSTII 396
S TA+VGP+GSGKS I+
Sbjct: 22 SPGFTAIVGPNGSGKSNIL 40
>gnl|CDD|32858 COG3044, COG3044, Predicted ATPase of the ABC class [General
function prediction only].
Length = 554
Score = 35.8 bits (82), Expect = 0.031
Identities = 39/165 (23%), Positives = 60/165 (36%), Gaps = 38/165 (23%)
Query: 380 KMTALVGPSGSGKSTIINLLMR-MYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFL 438
+T + G + GK+T++ + R + + G DG RER+
Sbjct: 243 GITLITGGNFHGKTTLLTAIERGVDNHIPG----DG-----------RERV--------- 278
Query: 439 FSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRI 498
+ + E E + FI LP G DT G + SG
Sbjct: 279 --------VTDVKLAKAEAEEGRCVSGLDLSLFINHLPGGKDTPDFVTG-DASGSTSMAA 329
Query: 499 AIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIV 543
I A+ L++DE TSA T LVR L++ +G T+
Sbjct: 330 WIQEAIEAGAKTLLIDEDTSA----TNLLVRDVLAKESEGERTLT 370
>gnl|CDD|30543 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 35.5 bits (82), Expect = 0.042
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 16/71 (22%)
Query: 379 GKMTALVGPSGSGKSTIINLLMRMYD-----------PSSGSIEIDGINIRDITFSSLRE 427
G + L GPSG GKST++ L+ P G E+DG+ D F + E
Sbjct: 4 GLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPG--EVDGV---DYFFVTEEE 58
Query: 428 RISYVGQDVFL 438
+ +D FL
Sbjct: 59 FEELIERDEFL 69
>gnl|CDD|143797 pfam00004, AAA, ATPase family associated with various cellular
activities (AAA). AAA family proteins often perform
chaperone-like functions that assist in the assembly,
operation, or disassembly of protein complexes.
Length = 131
Score = 34.9 bits (81), Expect = 0.066
Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 25/119 (21%)
Query: 462 IAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEA---TS 518
+AK A +S + YVGE+ L ++ A+ + ++ +DE
Sbjct: 18 VAKELGAPFIEISGSELVSKYVGESEKRL----RELFEAAKKLAP--CVIFIDEIDALAG 71
Query: 519 ALDTHTENLVRQALS---RLMQGRT-----TIVIA--HRISTIIEA------DHIIFIE 561
+ + ++ R+ ++ + G T IVIA +R + A D II
Sbjct: 72 SRGSGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLDPALLRGRFDRIIEFP 130
>gnl|CDD|36151 KOG0933, KOG0933, KOG0933, Structural maintenance of chromosome
protein 2 (chromosome condensation complex Condensin,
subunit E) [Chromatin structure and dynamics, Cell cycle
control, cell division, chromosome partitioning].
Length = 1174
Score = 34.5 bits (79), Expect = 0.073
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 5/48 (10%)
Query: 485 ENGSNLSGGQKQRIAIA--RAML--RDGHILVLDEATSALD-THTENL 527
E+ S LSGGQ+ +A++ AML + + +LDE +ALD +HT+N+
Sbjct: 1078 ESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNI 1125
>gnl|CDD|34791 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 34.8 bits (79), Expect = 0.074
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 381 MTALVGPSGSGKSTIINLLMRMY-----DPSSGSIEIDGINIRDITFSSLRERIS 430
+ A+VGP G+GKST+I L+R + D G I + R ITF +
Sbjct: 71 IVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSDLH 125
>gnl|CDD|33254 COG3451, VirB4, Type IV secretory pathway, VirB4 components
[Intracellular trafficking and secretion].
Length = 796
Score = 34.2 bits (78), Expect = 0.12
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 380 KMTALVGPSGSGKSTIINLLMRM 402
T ++GP+G+GK+ +++ L+
Sbjct: 437 GHTLIIGPTGAGKTVLLSFLLAQ 459
>gnl|CDD|110578 pfam01583, APS_kinase, Adenylylsulphate kinase. Enzyme that
catalyses the phosphorylation of adenylylsulphate to
3'-phosphoadenylylsulfate. This domain contains an ATP
binding P-loop motif.
Length = 157
Score = 33.8 bits (78), Expect = 0.15
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 384 LVGPSGSGKSTIINLLMRMYDPSSGSIEI-DGINIR-----DITFS 423
G SGSGKSTI N L R S+ + DG N+R D+ FS
Sbjct: 7 FTGLSGSGKSTIANALERKLFAQGISVYVLDGDNVRHGLNKDLGFS 52
>gnl|CDD|73032 cd03273, ABC_SMC2_euk, Eukaryotic SMC2 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 251
Score = 33.7 bits (77), Expect = 0.16
Identities = 58/220 (26%), Positives = 94/220 (42%), Gaps = 68/220 (30%)
Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI- 415
D F SY V+SG + F A+ G +GSGKS I++ + + GI
Sbjct: 9 DGFKSY-ATRTVISGFDPQF-----NAITGLNGSGKSNILDAICFVL----------GIT 52
Query: 416 NIRDITFSSLRERISYVGQD-------VFLFSN----------------TVRYNILIGRP 452
N+ + S+L++ I GQ +F N TV I++G
Sbjct: 53 NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGT 112
Query: 453 --------MATEEEMIEIAKSA-----NAHDFIMSLPQGYDTYV-------GENGSNLSG 492
A ++ + ++ +S N H IM QG T V E+ + LSG
Sbjct: 113 NKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIM---QGRITKVLNMGGVWKESLTELSG 169
Query: 493 GQKQRIAIA--RAML--RDGHILVLDEATSALD-THTENL 527
GQ+ +A++ A+L + + +LDE +ALD +HT+N+
Sbjct: 170 GQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNI 209
>gnl|CDD|37584 KOG2373, KOG2373, KOG2373, Predicted mitochondrial DNA helicase
twinkle [Replication, recombination and repair].
Length = 514
Score = 32.3 bits (73), Expect = 0.37
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTII-----NLLMRMYDPSSGSIEI 412
PVL+ + G++T L GP+GSGK+T + +L + + GS EI
Sbjct: 261 PVLNKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEI 311
>gnl|CDD|33963 COG4240, COG4240, Predicted kinase [General function prediction
only].
Length = 300
Score = 32.3 bits (73), Expect = 0.40
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 386 GPSGSGKST----IINLLMRMYDPSSGSIEID 413
GP GSGKST I+ LL + ++ +D
Sbjct: 57 GPQGSGKSTLSALIVRLLAAKGLERTATLSLD 88
>gnl|CDD|36214 KOG0996, KOG0996, KOG0996, Structural maintenance of chromosome
protein 4 (chromosome condensation complex Condensin,
subunit C) [Chromatin structure and dynamics, Cell cycle
control, cell division, chromosome partitioning].
Length = 1293
Score = 32.2 bits (73), Expect = 0.46
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 380 KMTALVGPSGSGKSTIINLLM 400
TA+VGP+GSGKS +I+ ++
Sbjct: 109 SFTAIVGPNGSGKSNVIDSML 129
>gnl|CDD|146340 pfam03647, Tmemb_14, Transmembrane proteins 14C. This family of
short membrane proteins are as yet uncharacterized.
Length = 96
Score = 32.2 bits (74), Expect = 0.48
Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 266 ISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRIILEGGMV 322
I+GL ++ + +L+ + G ++ + + ++A R +TR + G+V
Sbjct: 29 IAGLIFGALLGYGAYLLLQN--QPYGLELALLASAVLAGVMGPRYIKTRKFMPAGLV 83
>gnl|CDD|30875 COG0529, CysC, Adenylylsulfate kinase and related kinases
[Inorganic ion transport and metabolism].
Length = 197
Score = 32.1 bits (73), Expect = 0.48
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 384 LVGPSGSGKSTIINLLMR-MYDPSSGSIEIDGINIRDITFSSL 425
G SGSGKSTI N L ++ +DG N+R L
Sbjct: 28 FTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDL 70
>gnl|CDD|144489 pfam00910, RNA_helicase, RNA helicase. This family includes RNA
helicases thought to be involved in duplex unwinding
during viral RNA replication. Members of this family are
found in a variety of single stranded RNA viruses.
Length = 105
Score = 31.8 bits (73), Expect = 0.52
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 384 LVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIR--DITFSSLRERISYVGQDVFLF 439
L GP G GKST+ L R G + D + R D F Y GQ V +
Sbjct: 3 LYGPPGCGKSTLAKYLARALLDHLGLPKKDSVYSRNPDDDFWD-----GYTGQPVVII 55
>gnl|CDD|37913 KOG2702, KOG2702, KOG2702, Predicted panthothenate kinase/uridine
kinase-related protein [Nucleotide transport and
metabolism, Coenzyme transport and metabolism].
Length = 323
Score = 32.0 bits (72), Expect = 0.52
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 380 KMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINI 417
++T L G G+GKST I + + + + INI
Sbjct: 120 ELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINI 157
>gnl|CDD|30200 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK) catalyzes
the phosphorylation of adenosine 5'-phosphosulfate to
form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The
end-product PAPS is a biologically "activated" sulfate
form important for the assimilation of inorganic
sulfate..
Length = 149
Score = 32.0 bits (73), Expect = 0.53
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 384 LVGPSGSGKSTIINLLMR-MYDPSSGSIEIDGINIR-----DITFS 423
L G SGSGKSTI L ++ +DG N+R D+ FS
Sbjct: 4 LTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFS 49
>gnl|CDD|36405 KOG1191, KOG1191, KOG1191, Mitochondrial GTPase [Translation,
ribosomal structure and biogenesis].
Length = 531
Score = 31.9 bits (72), Expect = 0.57
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 377 KSGKMTALVGPSGSGKSTIINLLMR----MYDPSSGS--------IEIDGINIRDITFSS 424
+SG A+VG GKS+++N L R + P G+ + ++G+ +R +
Sbjct: 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAG 325
Query: 425 LRE 427
+RE
Sbjct: 326 IRE 328
>gnl|CDD|33504 COG3709, COG3709, Uncharacterized component of phosphonate
metabolism [Inorganic ion transport and metabolism].
Length = 192
Score = 31.4 bits (71), Expect = 0.63
Identities = 10/18 (55%), Positives = 16/18 (88%)
Query: 379 GKMTALVGPSGSGKSTII 396
G++ A+VGPSG+GK T++
Sbjct: 5 GRLIAVVGPSGAGKDTLL 22
>gnl|CDD|30003 cd01393, recA_like, RecA is a bacterial enzyme which has roles in
homologous recombination, DNA repair, and the induction
of the SOS response. RecA couples ATP hydrolysis to DNA
strand exchange. While prokaryotes have a single RecA
protein, eukaryotes have multiple RecA homologs such as
Rad51, DMC1 and Rad55/57. Archaea have the RecA-like
homologs radA and radB..
Length = 226
Score = 31.3 bits (71), Expect = 0.78
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 378 SGKMTALVGPSGSGKSTI-------INLLMRMYDPSSGSIEIDGINIRDITFSSLR-ERI 429
+G++T + G GSGK+ + L + + ID T + R ER+
Sbjct: 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID-------TEGAFRPERL 70
Query: 430 SYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSA 466
+ L V NI + RP E+ +EI +
Sbjct: 71 VQLAVRFGLDPEEVLDNIYVARPY-NGEQQLEIVEEL 106
>gnl|CDD|133259 cd01850, CDC_Septin, CDC/Septin. Septins are a conserved family of
GTP-binding proteins associated with diverse processes
in dividing and non-dividing cells. They were first
discovered in the budding yeast S. cerevisiae as a set
of genes (CDC3, CDC10, CDC11 and CDC12) required for
normal bud morphology. Septins are also present in
metazoan cells, where they are required for cytokinesis
in some systems, and implicated in a variety of other
processes involving organization of the cell cortex and
exocytosis. In humans, 12 septin genes generate dozens
of polypeptides, many of which comprise heterooligomeric
complexes. Since septin mutants are commonly defective
in cytokinesis and formation of the neck formation of
the neck filaments/septin rings, septins have been
considered to be the primary constituents of the neck
filaments. Septins belong to the GTPase superfamily for
their conserved GTPase motifs and enzymatic activities.
Length = 276
Score = 31.3 bits (72), Expect = 0.78
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 384 LVGPSGSGKSTIINLL 399
+VG SG GKST IN L
Sbjct: 9 VVGESGLGKSTFINTL 24
>gnl|CDD|73034 cd03275, ABC_SMC1_euk, Eukaryotic SMC1 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 247
Score = 31.3 bits (71), Expect = 0.82
Identities = 52/232 (22%), Positives = 88/232 (37%), Gaps = 43/232 (18%)
Query: 359 FFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIE------- 411
F SYK H + + T ++GP+GSGKS +++ + + S +
Sbjct: 9 FKSYKGRHVIGPF-------DRFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDL 61
Query: 412 IDGINIRDITFSSLRERISYVGQD----VFLFSNT-VRYNILIGRPMATEEEMIEIAKSA 466
I + +S Y D F T + I + + +E E +
Sbjct: 62 IYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKI 121
Query: 467 N----AHDFIMSLPQG-YDTYVGENG--------SNLSGGQKQRIAIARAMLRDGH---- 509
N A +F++ QG ++ +N NLSGG+K A+ A+L H
Sbjct: 122 NILVKARNFLVF--QGDVESIASKNPPGKRFRDMDNLSGGEKTMAAL--ALLFAIHSYQP 177
Query: 510 --ILVLDEATSALD-THTENLVRQALSRLMQGRTTIVIAHRISTIIEADHII 558
VLDE +ALD T+ + + IVI+ + +AD ++
Sbjct: 178 APFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALV 229
>gnl|CDD|35854 KOG0635, KOG0635, KOG0635, Adenosine 5'-phosphosulfate kinase
[Inorganic ion transport and metabolism].
Length = 207
Score = 31.1 bits (70), Expect = 0.85
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 384 LVGPSGSGKSTIINLLMRM-YDPSSGSIEIDGINIR-----DITFSS--LRERISYVGQD 435
+ G SGSGKST+ L + + +DG N+R D+ F + E I +G+
Sbjct: 36 ITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNENIRRIGEV 95
Query: 436 VFLFSNT 442
LF++
Sbjct: 96 AKLFADA 102
>gnl|CDD|147760 pfam05783, DLIC, Dynein light intermediate chain (DLIC). This
family consists of several eukaryotic dynein light
intermediate chain proteins. The light intermediate
chains (LICs) of cytoplasmic dynein consist of multiple
isoforms, which undergo post-translational modification
to produce a large number of species. DLIC1 is known to
be involved in assembly, organisation, and function of
centrosomes and mitotic spindles when bound to
pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2
that may play a role in maintaining Golgi organisation
by binding cytoplasmic dynein 2 to its Golgi-associated
cargo.
Length = 490
Score = 31.0 bits (70), Expect = 0.99
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 378 SGKMTALVGPSGSGKSTIINLLMRMYDPSSGS-IEIDGINIRD 419
SGK ++G GSGK+T+I L + P G +E +N+ D
Sbjct: 44 SGKNVLVLGEDGSGKTTLIAKLQGVEHPKKGRGLEYLYLNVHD 86
>gnl|CDD|73033 cd03274, ABC_SMC4_euk, Eukaryotic SMC4 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 212
Score = 31.0 bits (70), Expect = 1.1
Identities = 45/201 (22%), Positives = 86/201 (42%), Gaps = 44/201 (21%)
Query: 380 KMTALVGPSGSGKSTIINLLMRMY----------------DPSSGSIEIDGINIRDITFS 423
+A+VGP+GSGKS +I+ ++ ++ S+G +D ++ ++ F
Sbjct: 26 SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCSV-EVHFQ 84
Query: 424 SLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYV 483
+ ++ + + L N R+ IL G E++ ++ K +
Sbjct: 85 EIIDKPLLKSKGIDLDHN--RFLILQGEV----EQIAQMPKKS----------------- 121
Query: 484 GENGSNLSGGQKQ----RIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGR 539
+N SNLSGG+K + A + + V+DE +ALD ++V + +
Sbjct: 122 WKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNA 181
Query: 540 TTIVIAHRISTIIEADHIIFI 560
IVI+ R + AD ++ I
Sbjct: 182 QFIVISLRNNMFELADRLVGI 202
>gnl|CDD|30833 COG0486, ThdF, Predicted GTPase [General function prediction only].
Length = 454
Score = 30.5 bits (69), Expect = 1.4
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 377 KSGKMTALVGPSGSGKSTIINLLMR------------MYDPSSGSIEIDGINIRDITFSS 424
+ G ++G GKS+++N L+ D I ++GI +R + +
Sbjct: 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAG 274
Query: 425 LRE 427
+RE
Sbjct: 275 IRE 277
>gnl|CDD|36180 KOG0962, KOG0962, KOG0962, DNA repair protein RAD50, ABC-type
ATPase/SMC superfamily [Replication, recombination and
repair].
Length = 1294
Score = 30.3 bits (68), Expect = 1.6
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
Query: 491 SGGQKQ------RIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTT--- 541
S GQK R+A+A + +L LDE T+ LD + +ALSR+++ R
Sbjct: 1185 SAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRN 1244
Query: 542 ---IVIAH 546
IVI H
Sbjct: 1245 FQLIVITH 1252
Score = 28.7 bits (64), Expect = 4.9
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 381 MTALVGPSGSGKSTIINLL 399
+T +VG +G+GK+TII L
Sbjct: 29 LTLIVGANGTGKTTIIECL 47
>gnl|CDD|73296 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor..
Length = 147
Score = 30.1 bits (68), Expect = 1.6
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 383 ALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERIS 430
A+ GP+GSGKST+ LL + G +D IR L ++
Sbjct: 3 AIDGPAGSGKSTVAKLLAKKL----GLPYLDTGGIRTEEVGKLASEVA 46
>gnl|CDD|35926 KOG0707, KOG0707, KOG0707, Guanylate kinase [Nucleotide transport
and metabolism].
Length = 231
Score = 29.9 bits (67), Expect = 2.1
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 14/66 (21%)
Query: 384 LVGPSGSGKSTIINLLMRMYD-----------PSSGSIEIDGINIRDITFSSLRERISYV 432
L GPSG GKST++ L + + E+ G FS+ E +S +
Sbjct: 42 LSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGK---HYHFSTTEEFLSMI 98
Query: 433 GQDVFL 438
+ F+
Sbjct: 99 KNNEFI 104
>gnl|CDD|30988 COG0643, CheA, Chemotaxis protein histidine kinase and related
kinases [Cell motility and secretion / Signal
transduction mechanisms].
Length = 716
Score = 29.9 bits (67), Expect = 2.2
Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 194 VKRVRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNK 251
+ VR +++ + + + +LQ+ V+ IR+V E+V + R M++++ +L K
Sbjct: 359 LDEVREELDEALRQLSRLTTDLQDEVMKIRMV---PFEQVFS-RFPRMVRDLARKLGK 412
>gnl|CDD|34546 COG4938, COG4938, Uncharacterized conserved protein [Function
unknown].
Length = 374
Score = 29.6 bits (66), Expect = 2.4
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 372 INLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRER 428
IN +T +GP+ SGKST I L +Y + S + + + + + E
Sbjct: 14 INGKIILKPLTVFIGPNSSGKSTTIQSLYLIYSGLTRSYALPRLACAEYSRNKKWEE 70
>gnl|CDD|133282 cd01882, BMS1, Bms1. Bms1 is an essential, evolutionarily
conserved, nucleolar protein. Its depletion interferes
with processing of the 35S pre-rRNA at sites A0, A1, and
A2, and the formation of 40S subunits. Bms1, the
putative endonuclease Rc11, and the essential U3 small
nucleolar RNA form a stable subcomplex that is believed
to control an early step in the formation of the 40S
subumit. The C-terminal domain of Bms1 contains a
GTPase-activating protein (GAP) that functions
intramolecularly. It is believed that Rc11 activates
Bms1 by acting as a guanine-nucleotide exchange factor
(GEF) to promote GDP/GTP exchange, and that activated
(GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Length = 225
Score = 29.6 bits (67), Expect = 2.6
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 14/55 (25%)
Query: 383 ALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT-----FSSLRERISYV 432
A+VGP G GK+T+I L++ Y NI DI + + R++++
Sbjct: 43 AVVGPPGVGKTTLIKSLVKNY---------TKQNISDIKGPITVVTGKKRRLTFI 88
>gnl|CDD|133258 cd00882, Ras_like_GTPase, Ras-like GTPase superfamily. The Ras-like
superfamily of small GTPases consists of several
families with an extremely high degree of structural and
functional similarity. The Ras superfamily is divided
into at least four families in eukaryotes: the Ras, Rho,
Rab, and Sar1/Arf families. This superfamily also
includes proteins like the GTP translation factors,
Era-like GTPases, and G-alpha chain of the
heterotrimeric G proteins. Members of the Ras
superfamily regulate a wide variety of cellular
functions: the Ras family regulates gene expression, the
Rho family regulates cytoskeletal reorganization and
gene expression, the Rab and Sar1/Arf families regulate
vesicle trafficking, and the Ran family regulates
nucleocytoplasmic transport and microtubule
organization. The GTP translation factor family regulate
initiation, elongation, termination, and release in
translation, and the Era-like GTPase family regulates
cell division, sporulation, and DNA replication. Members
of the Ras superfamily are identified by the GTP binding
site, which is made up of five characteristic sequence
motifs, and the switch I and switch II regions.
Length = 157
Score = 29.4 bits (66), Expect = 2.6
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 384 LVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYV-----GQDVFL 438
+VG SG GK++++N L+ E I+ T +++ GQ+ F
Sbjct: 1 VVGDSGVGKTSLLNRLLGGE-FVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFR 59
Query: 439 FSNTVRYN 446
+ Y
Sbjct: 60 SLRRLYYR 67
>gnl|CDD|144365 pfam00735, Septin, Septin. Members of this family include CDC3,
CDC10, CDC11 and CDC12/Septin. Members of this family
bind GTP. As regards the septins, these are polypeptides
of 30-65kDa with three characteristic GTPase motifs
(G-1, G-3 and G-4) that are similar to those of the Ras
family. The G-4 motif is strictly conserved with a
unique septin consensus of AKAD. Most septins are
thought to have at least one coiled-coil region, which
in some cases is necessary for intermolecular
interactions that allow septins to polymerize to form
rod-shaped complexes. In turn, these are arranged into
tandem arrays to form filaments. They are
multifunctional proteins, with roles in cytokinesis,
sporulation, germ cell development, exocytosis and
apoptosis.
Length = 280
Score = 29.6 bits (67), Expect = 2.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 384 LVGPSGSGKSTIINLL 399
+VG SG GK+T+IN L
Sbjct: 9 VVGESGLGKTTLINTL 24
>gnl|CDD|133256 cd00880, Era_like, Era (E. coli Ras-like protein)-like. This
family includes several distinct subfamilies (TrmE/ThdF,
FeoB, YihA (EngG), Era, and EngA/YfgK) that generally
show sequence conservation in the region between the
Walker A and B motifs (G1 and G3 box motifs), to the
exclusion of other GTPases. TrmE is ubiquitous in
bacteria and is a widespread mitochondrial protein in
eukaryotes, but is absent from archaea. The yeast member
of TrmE family, MSS1, is involved in mitochondrial
translation; bacterial members are often present in
translation-related operons. FeoB represents an unusual
adaptation of GTPases for high-affinity iron (II)
transport. YihA (EngB) family of GTPases is typified by
the E. coli YihA, which is an essential protein involved
in cell division control. Era is characterized by a
distinct derivative of the KH domain (the pseudo-KH
domain) which is located C-terminal to the GTPase
domain. EngA and its orthologs are composed of two
GTPase domains and, since the sequences of the two
domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct GTPases,
gave rise to this family.
Length = 163
Score = 29.6 bits (67), Expect = 2.8
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 384 LVGPSGSGKSTIINLLMR 401
L G + +GKS+++N L+
Sbjct: 1 LFGRTNAGKSSLLNALLG 18
>gnl|CDD|38801 KOG3595, KOG3595, KOG3595, Dyneins, heavy chain [Cytoskeleton].
Length = 1395
Score = 29.5 bits (66), Expect = 2.9
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 372 INLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSI 410
+ L GK LVGP+G+GK+ ++ +R +
Sbjct: 120 LKLLLAHGKPVLLVGPTGTGKTVLVLSELRSLQDREVYL 158
>gnl|CDD|73000 cd03241, ABC_RecN, RecN ATPase involved in DNA repair; ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds including sugars, ions, peptides, and more
complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 276
Score = 29.4 bits (66), Expect = 2.9
Identities = 45/233 (19%), Positives = 78/233 (33%), Gaps = 44/233 (18%)
Query: 372 INLCFKSGKMTALVGPSGSGKSTIIN-LLMRMYDPSSGSI-----------EIDGINIRD 419
+ L F+ G +T L G +G+GKS +++ L + + +S + + I+ +
Sbjct: 15 LELDFEEG-LTVLTGETGAGKSILLDALSLLLGGRASADLIRSGAEKAVVEGVFDISDEE 73
Query: 420 ITFSSLRERISYVGQDVFL---FSNTVRYNILIGRPMATEEEMIEIAKS----------- 465
+ L E D+ + S R I T + + E+
Sbjct: 74 EAKALLLELGIEDDDDLIIRREISRKGRSRYFINGQSVTLKLLRELGSLLVDIHGQHDHQ 133
Query: 466 --ANAHDFIMSLPQGYD-------TYVGENG----SNLSGGQKQRIAIA----RAMLRDG 508
N + L G D T GE SGG+ R+ +A A
Sbjct: 134 NLLNPERQLDLLDGGLDDVEFLFSTNPGEPLKPLAKIASGGELSRLMLALKAILARKDAV 193
Query: 509 HILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIE 561
L+ DE + + V + L L + + I H AD+ +E
Sbjct: 194 PTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVE 246
>gnl|CDD|31412 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 408
Score = 29.4 bits (66), Expect = 3.0
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 13/54 (24%)
Query: 384 LVGPSGSGKSTIINLLMRMYD-PSSGSIEIDGINIRDITFSSLRERISYVGQDV 436
L+GP+GSGK+ + L ++ + P I D T +L E YVG+DV
Sbjct: 102 LIGPTGSGKTLLAQTLAKILNVP---------FAIADAT--TLTE-AGYVGEDV 143
>gnl|CDD|133305 cd04105, SR_beta, Signal recognition particle receptor, beta
subunit (SR-beta). SR-beta and SR-alpha form the
heterodimeric signal recognition particle (SRP or SR)
receptor that binds SRP to regulate protein
translocation across the ER membrane. Nascent
polypeptide chains are synthesized with an N-terminal
hydrophobic signal sequence that binds SRP54, a
component of the SRP. SRP directs targeting of the
ribosome-nascent chain complex (RNC) to the ER membrane
via interaction with the SR, which is localized to the
ER membrane. The RNC is then transferred to the
protein-conducting channel, or translocon, which
facilitates polypeptide translation across the ER
membrane or integration into the ER membrane. SR-beta
is found only in eukaryotes; it is believed to control
the release of the signal sequence from SRP54 upon
binding of the ribosome to the translocon. High
expression of SR-beta has been observed in human colon
cancer, suggesting it may play a role in the development
of this type of cancer.
Length = 203
Score = 29.2 bits (66), Expect = 3.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 384 LVGPSGSGKSTIINLL 399
L+GPS SGK+ + L
Sbjct: 5 LLGPSDSGKTALFTKL 20
>gnl|CDD|31388 COG1195, RecF, Recombinational DNA repair ATPase (RecF pathway)
[DNA replication, recombination, and repair].
Length = 363
Score = 29.0 bits (65), Expect = 3.6
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 18/92 (19%)
Query: 490 LSGGQKQRIAIA---------RAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGR- 539
S GQ++ +A+A R + IL+LD+ S LD R AL ++
Sbjct: 276 ASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGR----RAALLDTIELGV 331
Query: 540 ----TTIVIAHRISTIIEADHIIFIEDGKVSE 567
TT + + E + +EDGK+++
Sbjct: 332 QVFVTTTDLEDIDDNLDENAQMFHVEDGKITK 363
>gnl|CDD|143853 pfam00071, Ras, Ras family. Includes sub-families Ras, Rab, Rac,
Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with
GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025,
pfam00063. As regards Rab GTPases, these are important
regulators of vesicle formation, motility and fusion.
They share a fold in common with all Ras GTPases: this
is a six-stranded beta-sheet surrounded by five
alpha-helices.
Length = 162
Score = 29.0 bits (66), Expect = 3.6
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 20/74 (27%)
Query: 384 LVGPSGSGKSTIINLLMR-----MYDPSSG------SIEIDGINIR-DIT-------FSS 424
LVG G GKS+++ + Y P+ G +IE+DG ++ I F +
Sbjct: 4 LVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRA 63
Query: 425 LRERISYVGQDVFL 438
LR + Y G FL
Sbjct: 64 LR-PLYYRGAQGFL 76
>gnl|CDD|33492 COG3696, COG3696, Putative silver efflux pump [Inorganic ion
transport and metabolism].
Length = 1027
Score = 29.0 bits (65), Expect = 3.8
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 151 ITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKRVR---HIMEQGMVA 207
++ L + LV +++ +FL +L II PL +L I++ ++M G +A
Sbjct: 336 VSKTLIEGSVLVIIVLALFLGNFRSALIVIISLPLSLLIAFIVMNFFGISANLMSLGGLA 395
Query: 208 IG 209
I
Sbjct: 396 IA 397
>gnl|CDD|58644 cd00003, PNPsynthase, Pyridoxine 5'-phosphate (PNP) synthase
domain; pyridoxal 5'-phosphate is the active form of
vitamin B6 that acts as an essential, ubiquitous
coenzyme in amino acid metabolism. In bacteria,
formation of pyridoxine 5'-phosphate is a step in the
biosynthesis of vitamin B6. PNP synthase, a
homooctameric enzyme, catalyzes the final step in PNP
biosynthesis, the condensation of 1-amino-acetone
3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP
synthase adopts a TIM barrel topology, intersubunit
contacts are mediated by three ''extra'' helices,
generating a tetramer of symmetric dimers with shared
active sites; the open state has been proposed to accept
substrates and to release products, while most of the
catalytic events are likely to occur in the closed
state; a hydrophilic channel running through the center
of the barrel was identified as the essential structural
feature that enables PNP synthase to release water
molecules produced during the reaction from the closed,
solvent-shielded active site..
Length = 234
Score = 28.9 bits (65), Expect = 4.0
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 434 QDVFLFSNTVR--YNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLS 491
+DV L VR N+ MA EEM+EIA H + +P+ + E G ++
Sbjct: 52 RDVRLLRELVRTELNL----EMAPTEEMLEIALEVKPHQVTL-VPEKREELTTEGGLDV- 105
Query: 492 GGQKQRIAIARAMLRDGHILV 512
GQ +++ L+D I V
Sbjct: 106 AGQAEKLKPIIERLKDAGIRV 126
>gnl|CDD|145617 pfam02572, CobA_CobO_BtuR, ATP:corrinoid adenosyltransferase
BtuR/CobO/CobP. This family consists of the BtuR, CobO,
CobP proteins all of which are Cob(I)alamin
adenosyltransferase, EC:2.5.1.17, involved in cobalamin
(vitamin B12) biosynthesis. These enzymes catalyse the
adenosylation reaction: ATP + cob(I)alamin + H2O <=>
phosphate + diphosphate + adenosylcobalamin.
Length = 172
Score = 28.9 bits (66), Expect = 4.1
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 499 AIARAMLRDG--HILVLDEATSALD 521
A+ L G ++VLDE AL
Sbjct: 86 EKAKEALASGSYDLVVLDELNYALK 110
>gnl|CDD|31889 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related
GTPases of G3E family [Amino acid transport and
metabolism].
Length = 323
Score = 28.7 bits (64), Expect = 4.1
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 38/100 (38%)
Query: 384 LVGPSGSGKSTIINLLMRMY------------DPSS----GSIEIDGINIRDITFSSLRE 427
+ G G+GKST+I L R DPSS GSI D I ++ +
Sbjct: 56 ITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRL------- 108
Query: 428 RISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSAN 467
V + I R + + ++++
Sbjct: 109 --------------AVDPGVFI-RSSPSRGTLGGLSRATR 133
>gnl|CDD|33185 COG3378, COG3378, Predicted ATPase [General function prediction
only].
Length = 517
Score = 28.8 bits (64), Expect = 4.1
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 380 KMTALVGPSGSGKSTIINLLMR---MYDPSSGSIEI 412
K+ L GP G+GKST ++L+ Y+ +S +
Sbjct: 231 KLFWLYGPGGNGKSTFVDLISNLLGRYNVTSAPLTD 266
>gnl|CDD|133370 cd04170, EF-G_bact, Elongation factor G (EF-G) subfamily.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA and
the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial binding
of EF-G as well. The dissociation of EF-G leaves the
ribosome ready to accept the next aminoacyl-tRNA into
the A site. This group contains only bacterial members.
Length = 268
Score = 28.7 bits (65), Expect = 4.3
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 383 ALVGPSGSGKST 394
ALVG SGSGK+T
Sbjct: 3 ALVGHSGSGKTT 14
>gnl|CDD|144280 pfam00625, Guanylate_kin, Guanylate kinase.
Length = 182
Score = 28.9 bits (65), Expect = 4.3
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 14/66 (21%)
Query: 384 LVGPSGSGKSTIINLLMRMYDPSSGSI-----------EIDGINIRDITFSSLRERISYV 432
L GPSG GKS I L+ Y G E+DG +D F S E + +
Sbjct: 6 LSGPSGVGKSHIKKALLDEYPEKFGYSVSHTTRPPRPGEVDG---KDYHFVSKEEMENDI 62
Query: 433 GQDVFL 438
+ FL
Sbjct: 63 SANEFL 68
>gnl|CDD|133278 cd01876, YihA_EngB, The YihA (EngB) subfamily. This subfamily of
GTPases is typified by the E. coli YihA, an essential
protein involved in cell division control. YihA and its
orthologs are small proteins that typically contain less
than 200 amino acid residues and consists of the GTPase
domain only (some of the eukaryotic homologs contain an
N-terminal extension of about 120 residues that might be
involved in organellar targeting). Homologs of yihA are
found in most Gram-positive and Gram-negative pathogenic
bacteria, with the exception of Mycobacterium
tuberculosis. The broad-spectrum nature of YihA and its
essentiality for cell viability in bacteria make it an
attractive antibacterial target.
Length = 170
Score = 28.6 bits (65), Expect = 4.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 383 ALVGPSGSGKSTIINLLMR 401
A G S GKS++IN L
Sbjct: 3 AFAGRSNVGKSSLINALTN 21
>gnl|CDD|30474 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and
metabolism].
Length = 208
Score = 28.7 bits (64), Expect = 4.6
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 379 GKMTALVGPSGSGKSTIINLLMRMYD 404
G + G G+GK+T LL +
Sbjct: 3 GMFIVIEGIDGAGKTTQAELLKERLE 28
>gnl|CDD|37246 KOG2035, KOG2035, KOG2035, Replication factor C, subunit RFC3
[Energy production and conversion, Replication,
recombination and repair].
Length = 351
Score = 28.7 bits (64), Expect = 4.8
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 386 GPSGSGKSTIINLLMR-MYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFL 438
GPSG+GK T I L+R +Y ++I+ T S + IS V + L
Sbjct: 41 GPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFT--TPSKKKLEISTVSSNYHL 92
>gnl|CDD|29988 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3'
helicases. Helicases couple NTP hydrolysis to the
unwinding of nucleic acid duplexes into their component
strands..
Length = 271
Score = 28.7 bits (64), Expect = 4.8
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTII 396
PVL+ + + G++ L +G GK+T +
Sbjct: 18 PVLNKLTKGLRKGELIILTAGTGVGKTTFL 47
>gnl|CDD|36760 KOG1547, KOG1547, KOG1547, Septin CDC10 and related P-loop GTPases
[Cell cycle control, cell division, chromosome
partitioning, Signal transduction mechanisms,
Cytoskeleton].
Length = 336
Score = 28.8 bits (64), Expect = 5.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 384 LVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT 421
+VG SG GKST+IN L + + S S + I T
Sbjct: 51 VVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTT 88
>gnl|CDD|57926 cd01855, YqeH, YqeH. YqeH is an essential GTP-binding protein.
Depletion of YqeH induces an excess initiation of DNA
replication, suggesting that it negatively controls
initiation of chromosome replication. The YqeH subfamily
is common in eukaryotes and sporadically present in
bacteria with probable acquisition by plants from
chloroplasts. Proteins of the YqeH family contain all
sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases..
Length = 190
Score = 28.3 bits (63), Expect = 5.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMY 403
+++ I K G +VG + GKST+IN L++
Sbjct: 116 LINAIKKLAKKGGDVYVVGATNVGKSTLINALLKKD 151
>gnl|CDD|37866 KOG2655, KOG2655, KOG2655, Septin family protein (P-loop GTPase)
[Cell cycle control, cell division, chromosome
partitioning, Nuclear structure, Intracellular
trafficking, secretion, and vesicular transport].
Length = 366
Score = 28.4 bits (63), Expect = 5.5
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 384 LVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTV 443
+VG SG GKST IN L SG+ E+ G + R + + ++ + TV
Sbjct: 26 VVGESGLGKSTFINSLFL--TDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTV 83
Query: 444 R 444
Sbjct: 84 I 84
>gnl|CDD|30975 COG0630, VirB11, Type IV secretory pathway, VirB11 components, and
related ATPases involved in archaeal flagella
biosynthesis [Cell motility and secretion /
Intracellular trafficking and secretion].
Length = 312
Score = 28.4 bits (63), Expect = 5.9
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 374 LCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT 421
L ++ K + G + SGK+T++N L+ P + I+ +
Sbjct: 138 LAIEARKSIIICGGTASGKTTLLNALLDFIPPEERIVTIEDTPELKLP 185
>gnl|CDD|146036 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 122
Score = 28.5 bits (64), Expect = 6.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 383 ALVGPSGSGKSTIINLLMRM 402
+VGP SGK+T+I L+
Sbjct: 4 LVVGPKDSGKTTLIRKLLNY 23
>gnl|CDD|34624 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 28.3 bits (63), Expect = 6.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 384 LVGPSGSGKSTIINLL 399
+VG SG GK+T IN L
Sbjct: 28 VVGESGLGKTTFINTL 43
>gnl|CDD|133359 cd04159, Arl10_like, Arl10-like subfamily. Arl9/Arl10 was
identified from a human cancer-derived EST dataset. No
functional information about the subfamily is available
at the current time, but crystal structures of human
Arl10b and Arl10c have been solved.
Length = 159
Score = 28.0 bits (63), Expect = 6.6
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 11/46 (23%)
Query: 381 MTALVGPSGSGKSTIINLLMRMYDPSSGSIEID-----GINIRDIT 421
LVG SGK+T++N++ + G D G N+R +T
Sbjct: 1 EITLVGLQNSGKTTLVNVI------AGGQFSEDTIPTVGFNMRKVT 40
>gnl|CDD|37536 KOG2325, KOG2325, KOG2325, Predicted transporter/transmembrane
protein [General function prediction only].
Length = 488
Score = 28.4 bits (63), Expect = 6.7
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 255 IESATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTR 314
IE+ +S + + G + + +L++G +S G I+S I LL + +I + R
Sbjct: 281 IETLSSALTMVMYGWTGSEAVLYNGITLSISG------ILSVILLLLYIFTRLGKIDKRR 334
Query: 315 IILEGGMVGVRCMF 328
IIL G ++ +
Sbjct: 335 IILLGFLIFFLSYY 348
>gnl|CDD|30843 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 28.3 bits (63), Expect = 6.9
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 372 INLCFKSGKMTALVGPSGSGKSTIINLL 399
+ L F+ G +T L G +G+GKS II+ L
Sbjct: 16 LELEFEKG-LTVLTGETGAGKSIIIDAL 42
>gnl|CDD|36197 KOG0979, KOG0979, KOG0979, Structural maintenance of chromosome
protein SMC5/Spr18, SMC superfamily [Chromatin structure
and dynamics, Cell cycle control, cell division,
chromosome partitioning, Replication, recombination and
repair].
Length = 1072
Score = 28.0 bits (62), Expect = 6.9
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 375 CFKSGKMTALVGPSGSGKSTIIN 397
+ ++GP+GSGKS+I+
Sbjct: 38 FLPGPSLNMIIGPNGSGKSSIVC 60
>gnl|CDD|145059 pfam01706, FliG_C, FliG C-terminal domain. FliG is a component of
the flageller rotor, present in about 25 copies per
flagellum. This domain functions specifically in motor
rotation.
Length = 110
Score = 27.9 bits (63), Expect = 8.8
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 234 MNQRMCNMIKEVEDRLNKV--AKIESATSPIMETISGLSIAGII 275
M++R M++E + L V + +E+A I+ + L+ G I
Sbjct: 64 MSKRAAEMLREELEALGPVRLSDVEAAQKEIVAIVRELAEEGEI 107
>gnl|CDD|31353 COG1159, Era, GTPase [General function prediction only].
Length = 298
Score = 27.8 bits (62), Expect = 9.0
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 376 FKSGKMTALVGPSGSGKSTIINLLM 400
FKSG A++G GKST++N L+
Sbjct: 4 FKSG-FVAIIGRPNVGKSTLLNALV 27
>gnl|CDD|37181 KOG1970, KOG1970, KOG1970, Checkpoint RAD17-RFC complex,
RAD17/RAD24 component [Energy production and conversion,
Replication, recombination and repair].
Length = 634
Score = 27.7 bits (61), Expect = 9.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 379 GKMTALVGPSGSGKSTIINLL 399
++ L GPSG GKST + +L
Sbjct: 110 SRILLLTGPSGCGKSTTVKVL 130
>gnl|CDD|133363 cd04163, Era, Era subfamily. Era (E. coli Ras-like protein) is a
multifunctional GTPase found in all bacteria except some
eubacteria. It binds to the 16S ribosomal RNA (rRNA) of
the 30S subunit and appears to play a role in the
assembly of the 30S subunit, possibly by chaperoning the
16S rRNA. It also contacts several assembly elements of
the 30S subunit. Era couples cell growth with
cytokinesis and plays a role in cell division and energy
metabolism. Homologs have also been found in
eukaryotes. Era contains two domains: the N-terminal
GTPase domain and a C-terminal domain KH domain that is
critical for RNA binding. Both domains are important
for Era function. Era is functionally able to
compensate for deletion of RbfA, a cold-shock adaptation
protein that is required for efficient processing of the
16S rRNA.
Length = 168
Score = 27.8 bits (63), Expect = 9.6
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 376 FKSGKMTALVGPSGSGKSTIINLLM 400
FKSG A+VG GKST++N L+
Sbjct: 1 FKSG-FVAIVGRPNVGKSTLLNALV 24
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.324 0.137 0.384
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 6,956,150
Number of extensions: 382031
Number of successful extensions: 2298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2071
Number of HSP's successfully gapped: 336
Length of query: 596
Length of database: 6,263,737
Length adjustment: 99
Effective length of query: 497
Effective length of database: 4,124,446
Effective search space: 2049849662
Effective search space used: 2049849662
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.1 bits)