RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] (596 letters) >gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]. Length = 567 Score = 423 bits (1089), Expect = e-119 Identities = 212/577 (36%), Positives = 345/577 (59%), Gaps = 10/577 (1%) Query: 17 REMLSRLIRENIHKHVTWYSMSIVAMITVSLMTSCSAWIMRDVMNAMVASTDIFHVIVVS 76 +L RL++ +K ++I+ ++ +L++ ++ +++A++A +++ Sbjct: 1 LSLLRRLLKYLKYK---LLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLL- 56 Query: 77 STVAGIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRF 136 + + ++ G+ +Q+Y S G I+A+ +R ++ +LL+ + F+D +S +L R Sbjct: 57 -LLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRL 115 Query: 137 THATQSVRSVVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKR 196 T+ ++V ++V + L L+G +V++F L+L ++I PL L + +L ++ Sbjct: 116 TNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARK 175 Query: 197 VRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIE 256 R + + A+G + L E++ GIR++K+F E+ +R +E+ + +++E Sbjct: 176 SRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLE 235 Query: 257 SATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRII 316 + +P+M +S L ++ GFL+ G+ G + +FI LL P ++ + Sbjct: 236 ALLAPLMLLLSSLGTVLVLALGGFLVLS-GSLTVGALAAFILYLLRLLTPILQLGEVVSL 294 Query: 317 LEGGMVGVRCMFSLLDHPIMIEESPHAVNLPVGKGTTVFRDVFFSYKQGHPVLSGINLCF 376 L+ +F LLD +E+ P L G+ F +V FSY PVL I+ Sbjct: 295 LQRASAAAERLFELLDEEPEVEDPPDP--LKDTIGSIEFENVSFSYPGKKPVLKDISFSI 352 Query: 377 KSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDV 436 + G+ A+VGPSGSGKST+I LL+R+YDP+SG I IDGI+IRDI+ SLR+RI V QD Sbjct: 353 EPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDP 412 Query: 437 FLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQ 496 LFS T+R NI +GRP AT+EE+ E K ANAH+FI +LP GYDT VGE G NLSGGQ+Q Sbjct: 413 LLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQ 472 Query: 497 RIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADH 556 R+AIARA+LR+ IL+LDEATSALDT TE L++ AL +L++GRTT++IAHR+STI AD Sbjct: 473 RLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADR 532 Query: 557 IIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLE 593 II +++G++ E G + LL + G LY ++Y +Q Sbjct: 533 IIVLDNGRIVERGTHEELLAK--GGLYARLYQAQGGA 567 >gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]. Length = 716 Score = 404 bits (1040), Expect = e-113 Identities = 204/568 (35%), Positives = 311/568 (54%), Gaps = 6/568 (1%) Query: 28 IHKHVTWYSMSIVAMITVSLMTSCSAWIMRDVMNAMVASTDIFHVIVVSSTV-AGIFIVK 86 + W + V ++ SL+ + + +++ + D + + T+ G+F++ Sbjct: 142 LKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIG 201 Query: 87 GIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSV 146 +A+ ++ L AG ++A + ++R LL+ + F+D N++ EL R T TQ V + Sbjct: 202 ALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNS 261 Query: 147 VDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKRVRHIMEQGMV 206 V ++ LR+ + G + MF L+L T+I+ P+ L +I K +R + +Q Sbjct: 262 VSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQD 321 Query: 207 AIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIESATSPIMETI 266 A+ Q +E + +R V+SFA EE +R ++EV L+K + + Sbjct: 322 ALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLK-LSKKEAVAYGIFFGSTNL 380 Query: 267 SGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRIILEGGMVGVRC 326 G ILF G + G+ +G + SF+ + ++ L G+ Sbjct: 381 LGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASER 440 Query: 327 MFSLLDHPIMIEESPHAVNLPVGKGTTVFRDVFFSY--KQGHPVLSGINLCFKSGKMTAL 384 +F L+D I + + +G F DV F+Y + PVL ++ + G++ AL Sbjct: 441 VFELMDRKPRIPLTGTLAPDHL-QGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVAL 499 Query: 385 VGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVR 444 VGPSGSGKSTI +LL+R YDP+SG I +DG+ I DI LR +I VGQ+ LFS ++R Sbjct: 500 VGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIR 559 Query: 445 YNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAM 504 NI G AT+EE+ AK ANAH+FI + P GY+T VGE GS LSGGQKQRIAIARA+ Sbjct: 560 ENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARAL 619 Query: 505 LRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGK 564 LR+ +L+LDEATSALD +E LV++AL RLMQGRT +VIAHR+ST+ AD I+ I+ G+ Sbjct: 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGR 679 Query: 565 VSESGDQKYLLQQKDGSLYKKMYASQLL 592 V E G LL + +G LY K+ QL Sbjct: 680 VVEMGTHDELLSKPNG-LYAKLVQRQLD 706 >gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1228 Score = 368 bits (945), Expect = e-102 Identities = 192/588 (32%), Positives = 298/588 (50%), Gaps = 11/588 (1%) Query: 10 KVMSPSDREMLSRLIRENIHKHVTWYSMSIVAMITVSLMTSCSAWIMRDVMNAMVASTD- 68 V ++ R+ + N + + + A++ V+ A D Sbjct: 642 PVSEEDEKVSFWRIFKLNK-PEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDD 700 Query: 69 --IFHVIVVSSTVAGIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYD- 125 V + G+ IV GI +F+Q+Y+ AG + + ++R LL+ + ++D Sbjct: 701 ELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDD 760 Query: 126 SNQSSELQVRFTHATQSVRSVVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPL 185 S L R +VR+ V ++ +++ ++ I++ F+ L+L + PL Sbjct: 761 PENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPL 820 Query: 186 CILGVRILVKRVRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCNMIKEV 245 IL + K ++ + A + E V IR V + EE + +++ Sbjct: 821 LILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKP 880 Query: 246 EDRLNKVAKIESATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYE 305 K I +++ A + L+S + F+ A Sbjct: 881 RKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMA 940 Query: 306 PAKRIARTRIILEGGMVGVRCMFSLLDHPIMIE-ESPHAVNLPVGKGTTVFRDVFFSYKQ 364 + + I + + +F +LD I+ +S LP KG FR+V F+Y Sbjct: 941 LGQASSYAPDISKAKIAAGS-IFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPT 999 Query: 365 --GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITF 422 PVL+ ++L ++G+ ALVGPSGSGKST+I+LL R YDP +G ++IDG++I+D+ Sbjct: 1000 RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNL 1059 Query: 423 SSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTY 482 LR++I V Q+ LF+ T+R NI G +EEE+IE AK ANAH+FI SLPQGYDT Sbjct: 1060 KWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTR 1119 Query: 483 VGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTI 542 VGE G LSGGQKQRIAIARA+LR+ IL+LDEATSALD+ +E +V++AL R M+GRTTI Sbjct: 1120 VGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTI 1179 Query: 543 VIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQ 590 VIAHR+STI AD I +++GKV E G LL ++ +Y ++ Q Sbjct: 1180 VIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKR--GIYFRLVQLQ 1225 Score = 340 bits (874), Expect = 6e-94 Identities = 180/526 (34%), Positives = 274/526 (52%), Gaps = 10/526 (1%) Query: 77 STVAGIFIVKGIASFVQNY-YLSC---AGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSEL 132 S VA F+ G+ F+ + +SC G A + K + +L+ + ++D+N + EL Sbjct: 71 SKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGEL 130 Query: 133 QVRFTHATQSVRSVVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRI 192 R + + ++ + + +F++ T + V+ F L+L + PL + + Sbjct: 131 VTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGL 190 Query: 193 LVKRVRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKV 252 L + + + E+ A +E + IR V +F E+ +R ++ K Sbjct: 191 LARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKK 250 Query: 253 AKIESATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIAR 312 + + S A + G + G N G++++ ++L+ + + Sbjct: 251 GLFKGLGLGFTFFLLFASYALAFWY-GSTLILNGGYNGGDVITVFFSVLIGGMSLGQASP 309 Query: 313 TRIILEGGMVGVRCMFSLLD-HPIMIEESPHAVNLPVGKGTTVFRDVFFSY--KQGHPVL 369 +F +D P + S L KG FR+V FSY + +L Sbjct: 310 HLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKIL 369 Query: 370 SGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERI 429 G++L SG+ ALVGPSGSGKST+I LL R YDP+SG + IDG +IR++ LR +I Sbjct: 370 KGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQI 429 Query: 430 SYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSN 489 V Q+ LF+ T+R NI G+P AT EE+ E AK+ANAHDFI+ LP GYDT VGE G Sbjct: 430 GLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQ 489 Query: 490 LSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRIS 549 LSGGQKQRIAIARA++R+ IL+LDEATSALD +E +V++AL + +GRTTIV+AHR+S Sbjct: 490 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLS 549 Query: 550 TIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLENL 595 TI AD I +E+GK+ E G L+ G +Y + Q LE Sbjct: 550 TIRNADKIAVMEEGKIVEQGTHDELI--ALGGIYSSLVRLQELEKA 593 >gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]. Length = 709 Score = 338 bits (869), Expect = 2e-93 Identities = 180/553 (32%), Positives = 294/553 (53%), Gaps = 5/553 (0%) Query: 39 IVAMITVSLMTSCSAWIMRDVMNAMVASTDIFHVIVVSSTVAGIFIVKGIASFVQNYYLS 98 ++A + + L+ + + V++ ++ + V++ + + + + ++ Y ++ Sbjct: 160 LLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIA 219 Query: 99 CAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSVVDIFITSFLRDF 158 G + E + +R LL+ + +++ E+ R + +R + I + + D Sbjct: 220 HLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVREL-EQIREFLTGSILTLIIDL 278 Query: 159 LTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKRVRHIMEQGMVAIGHIIQNLQET 218 L + + VMFL L+L + PL +L I +R + + L ET Sbjct: 279 LFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVET 338 Query: 219 VIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIESATSPIMETISGLSIAGIILFS 278 + GI VK+ A E + N + + + K K+ + I + LS I+ F Sbjct: 339 IKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFG 398 Query: 279 GFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPIMIE 338 L+ + + G++++F P R+++ + V + + +LD P E Sbjct: 399 AILVLEGELT-LGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQE 457 Query: 339 ESPHAVNLPVGKGTTVFRDVFFSYKQGHP-VLSGINLCFKSGKMTALVGPSGSGKSTIIN 397 ++LP +G F +V F Y P VL ++L G+ A+VG SGSGKST++ Sbjct: 458 GDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLK 517 Query: 398 LLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEE 457 LL+ +Y P G I +DG+++ DI +SLR ++ YV QD FLFS ++R NI +G P AT+E Sbjct: 518 LLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDE 577 Query: 458 EMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEAT 517 E+IE A+ A AH+FI +LP GYDT VGE G+NLSGGQ+QR+A+ARA+L IL+LDEAT Sbjct: 578 EIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEAT 637 Query: 518 SALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQ 577 SALD TE ++ Q L +++QGRT I+IAHR+STI AD II ++ GK+ E G + LL Q Sbjct: 638 SALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697 Query: 578 KDGSLYKKMYASQ 590 G LY ++Y Q Sbjct: 698 --GGLYARLYQQQ 708 >gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 234 Score = 316 bits (811), Expect = 1e-86 Identities = 138/235 (58%), Positives = 173/235 (73%), Gaps = 3/235 (1%) Query: 354 VFRDVFFSY-KQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI 412 F++V F Y G PVL I+L +G+ ALVGPSGSGKST++NL+ R YD SG I I Sbjct: 2 EFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILI 61 Query: 413 DGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFI 472 DG ++RD T +SLR +I V QDVFLF++TV NI GRP AT EE+ E A++ANAH+FI Sbjct: 62 DGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFI 121 Query: 473 MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL 532 M LP+GYDT +GE G LSGGQ+QRIAIARA+L+D IL+LDEATSALDT +E LV+ AL Sbjct: 122 MELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAAL 181 Query: 533 SRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMY 587 RLM+ RTT VIAHR+STI AD I+ +EDGK+ E G + LL Q G +Y K++ Sbjct: 182 ERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ--GGVYAKLH 234 >gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.. Length = 238 Score = 314 bits (807), Expect = 4e-86 Identities = 132/239 (55%), Positives = 168/239 (70%), Gaps = 4/239 (1%) Query: 354 VFRDVFFSY--KQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIE 411 F++V F Y + P+L G++L GK ALVG SG GKST+++LL R YDP+SG I Sbjct: 2 EFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL 61 Query: 412 IDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDF 471 +DG++IRD+ LR +I V Q+ LF T+ NI G+P AT+EE+ E AK AN HDF Sbjct: 62 LDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDF 121 Query: 472 IMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQA 531 IMSLP GYDT VGE GS LSGGQKQRIAIARA+LR+ IL+LDEATSALD +E LV++A Sbjct: 122 IMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEA 181 Query: 532 LSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQ 590 L R M+GRTTIVIAHR+STI AD I +++G+V E G L+ QK +Y K+ +Q Sbjct: 182 LDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK--GVYAKLVKAQ 238 >gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]. Length = 790 Score = 310 bits (795), Expect = 7e-85 Identities = 167/483 (34%), Positives = 259/483 (53%), Gaps = 8/483 (1%) Query: 111 KIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVR--SVVDIFITSFLRDFLTLVGLIVVM 168 +++R L + ++ + ++ E+ T SV V I L D + + Sbjct: 297 ELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVTLLEYVVFQIGPTLLDLGVAMVYFFIK 356 Query: 169 FLQEPTLSLCTIIIGPLCILGVRILVKRVRHIMEQGMVAIGHIIQNLQ-ETVIGIRIVKS 227 F L + + L V I + R + M + + Q ++++ VK Sbjct: 357 FNIWFGL---IVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKY 413 Query: 228 FAMEEVMNQRMCNMIKEVEDRLNKVAKIESATSPIMETISGLSIAGIILFSGFLMSKKGT 287 + E+ +R I + + + K + + + I GL + L + ++++ T Sbjct: 414 YNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQ-T 472 Query: 288 SNAGEIMSFITALLMAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPIMIEESPHAVNLP 347 G+ + F+T L+ Y P ++ + + MF LL + + P A L Sbjct: 473 LTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLK 532 Query: 348 VGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSS 407 V +G F +V F+Y G PVLS I+ + GK ALVGPSG+GKSTI+ LL R +D +S Sbjct: 533 VTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNS 592 Query: 408 GSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSAN 467 GSI IDG +IR++T SSLR I V QD LF++T+ YNI +P A+ EE+ AK+A Sbjct: 593 GSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQ 652 Query: 468 AHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527 HD I+ P+GY+T VGE G LSGG+KQR+AIAR +L+ I++LDEATSALDT+TE Sbjct: 653 IHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERA 712 Query: 528 VRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMY 587 ++ AL+RL RTTIV+AHR+STI+ AD I+ I +G++ E G + LL++ G+ Y M+ Sbjct: 713 IQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGA-YADMW 771 Query: 588 ASQ 590 +Q Sbjct: 772 QAQ 774 >gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 229 Score = 307 bits (789), Expect = 5e-84 Identities = 135/229 (58%), Positives = 168/229 (73%) Query: 351 GTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSI 410 G F +V FSY + PVL IN K G+ A+VGP+G+GK+T+INLLMR YDP G I Sbjct: 1 GEIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60 Query: 411 EIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHD 470 IDGI+IRDI+ SLR I V QD FLFS T+ NI +GRP AT+EE+IE AK A AHD Sbjct: 61 LIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHD 120 Query: 471 FIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQ 530 FIM LP GYDT +GENG NLS G++Q +AIARAMLRD IL+LDEATS +DT TE L+++ Sbjct: 121 FIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQE 180 Query: 531 ALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKD 579 AL +LM+GRT+I+IAHR+STI AD I+ ++DGK+ E G LL +K Sbjct: 181 ALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229 >gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 236 Score = 307 bits (787), Expect = 8e-84 Identities = 134/237 (56%), Positives = 171/237 (72%), Gaps = 2/237 (0%) Query: 354 VFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEID 413 F +V F+Y G PVL ++ +GK A+VGPSGSGKSTI+ LL R YD SSGSI ID Sbjct: 2 EFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILID 61 Query: 414 GINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIM 473 G +IR++T SLR I V QD LF++T+ YNI GRP AT+EE+IE AK+A HD IM Sbjct: 62 GQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIM 121 Query: 474 SLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALS 533 P GYDT VGE G LSGG+KQR+AIARA+L++ IL+LDEATSALDTHTE ++ AL Sbjct: 122 RFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALR 181 Query: 534 RLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQ 590 + +GRTTIVIAHR+STI+ AD II ++DG++ E G + LL + G LY +M+ +Q Sbjct: 182 DVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK--GGLYAEMWKAQ 236 >gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]. Length = 559 Score = 294 bits (753), Expect = 7e-80 Identities = 140/561 (24%), Positives = 280/561 (49%), Gaps = 12/561 (2%) Query: 37 MSIVAMITV--SLMTSCSAWIMRDVMNAMVASTDIFHVIVVSSTVAGIFIVKGIASFVQN 94 + I A++ V + A ++ D++ ++ ++ + + +++ ++++ Sbjct: 2 LVISALLAVLSGIAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRE 61 Query: 95 YYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSVVDIFITSF 154 A + A ++ + +L + G F + + + ++ Sbjct: 62 RLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQM 121 Query: 155 LRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKRVRHIMEQGMVAIGHIIQN 214 + + +++ +F +L +I PL L + ++ + E+ A+ + + Sbjct: 122 FLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGH 181 Query: 215 LQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIESATSPIMETISGLSIAGI 274 + + G+ +++F E +R+ ++ V +I +S ++E + LSIA + Sbjct: 182 FLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALV 241 Query: 275 ILFSGFLMSKKGTSNAGEIMSFITALLMA---YEPAKRIARTRIILEGGMVGVRCMFSLL 331 ++ GF + +G + + + L++A ++P + + G +F+LL Sbjct: 242 AVYIGFRLLGEGDLT---LFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLL 298 Query: 332 DHPIMIEESPHAVNLPVGKGTTV-FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGS 390 + P+ S + + ++ F Y G P LS +NL K+G++TALVG SG+ Sbjct: 299 ESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGA 358 Query: 391 GKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIG 450 GKST++NLL+ P+ G I ++GI++RD++ + R++IS+V Q+ +LF+ T+R NIL+ Sbjct: 359 GKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLA 418 Query: 451 RPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHI 510 RP A++EE+I A +F+ P G DT +GE G+ LSGGQ QR+A+ARA+L + Sbjct: 419 RPDASDEEIIAALDQAGLLEFV-PKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASL 477 Query: 511 LVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGD 570 L+LDE T+ LD TE ++ QAL L + +T +VI HR+ +AD I+ +++G++ E G Sbjct: 478 LLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGT 537 Query: 571 QKYLLQQKDGSLYKKMYASQL 591 + L +++ LY + Q Sbjct: 538 HEELSEKQ--GLYANLLKQQE 556 >gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]. Length = 497 Score = 270 bits (692), Expect = 7e-73 Identities = 166/499 (33%), Positives = 253/499 (50%), Gaps = 11/499 (2%) Query: 94 NYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSVVDIFITS 153 + S G + + L + F+ ++ L T+ + +++ + + Sbjct: 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFN 62 Query: 154 FLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPL---CILGVRILVKRVRHIMEQGMVAIGH 210 L + + L+ V+ + + + + V + R + M Sbjct: 63 ILPTLVEI-SLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDF--RRLMNNADS 119 Query: 211 IIQNLQ-ETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIESATSPIMETISGL 269 ++++ VK F EE R + ++ E KV + I Sbjct: 120 DANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFST 179 Query: 270 SIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRIILEGGMVGVRCMFS 329 + ++ S + + G G++++ L P + + + + + MF Sbjct: 180 GLRVMMTMSALGVEE-GQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFD 238 Query: 330 LLDHPIMIEESPHAVNL-PVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPS 388 LLD + ++P A L PV G F +V F+Y P+L+GI+ GK A+VG S Sbjct: 239 LLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGES 298 Query: 389 GSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNIL 448 G+GKSTI+ LL R YD +SGSI IDG +IRD+T SLR I V QD LF++T+ YNI Sbjct: 299 GAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIK 358 Query: 449 IGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDG 508 GRP AT EE+ A++A HDFI SLP+GYDT VGE G LSGG+KQR+AIAR +L++ Sbjct: 359 YGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNP 418 Query: 509 HILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSES 568 IL+LDEATSALDTHTE ++ AL + GRTT+VIAHR+STII+AD II +++G++ E Sbjct: 419 PILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 Query: 569 GDQKYLLQQKDGSLYKKMY 587 G + LL G LY +M+ Sbjct: 479 GTHEELLAA--GGLYAEMW 495 >gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]. Length = 591 Score = 269 bits (690), Expect = 1e-72 Identities = 156/560 (27%), Positives = 273/560 (48%), Gaps = 15/560 (2%) Query: 38 SIVAMITVSLMTSCSAWIMRDVMNAMVASTDIFHVIVVSSTVAGIFIVKGIASFV----Q 93 ++ ++ ++ +I + +++ + + V+ + + + + + S V + Sbjct: 35 ALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELR 94 Query: 94 NYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSVVDIFITS 153 N+ + +I + ++R L+ + F+ S + L ++++ V+ + + Sbjct: 95 NFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFN 154 Query: 154 FLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKRVRHIMEQGM-VAIGHII 212 + + + +++ + + I+V R R+ + M A Sbjct: 155 IIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSAS 214 Query: 213 QNLQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIESATSPIMETISGLSIA 272 + +++I IVKSF EE R +K E K + + + + I +++ Sbjct: 215 RRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALT 274 Query: 273 GIIL--FSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRIILEGGMVGVRCMFSL 330 I++ +G K + + S + L + P + L + +R +F L Sbjct: 275 FIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSL---PLNFLGSVYRELRQALTDMRTLFIL 331 Query: 331 LDHPIMIEESPHAVNLPVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGS 390 L+ I+E+ + L G+ F DV FSY VL G++ G+ A+VG +GS Sbjct: 332 LEVDEDIQEAALPIELF--GGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGS 389 Query: 391 GKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIG 450 GKSTI+ LL+R +D SGSI IDG +I++++ SLR+ I V QD LF++T+ YNI G Sbjct: 390 GKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYG 448 Query: 451 RPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHI 510 P A++EE++E K A HD I LP GY T VGE G LSGG+KQR+++ARA L+D I Sbjct: 449 NPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPI 508 Query: 511 LVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGD 570 L+LDEATSALD+ TE + + +M GRT I+I HR+ + + D II +++G V E G Sbjct: 509 LLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGT 568 Query: 571 QKYLLQQKDGSLYKKMYASQ 590 LL LY ++ +Q Sbjct: 569 HSELLAP--SELYADLWTTQ 586 >gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1381 Score = 267 bits (684), Expect = 7e-72 Identities = 140/559 (25%), Positives = 252/559 (45%), Gaps = 12/559 (2%) Query: 32 VTWYSMSIVAMITVSLMTSCSAWIMRDVMNAMVASTDIFHVIVVSSTVAGIFIVKGIASF 91 + + + + V + S + W+ + T A + + + + Sbjct: 818 LVLLILLLFVLTQVLQIAS-NYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTL 876 Query: 92 VQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSVVDIFI 151 ++++ + G + K+ +L+ M F+D+ + + RF+ +V ++ + Sbjct: 877 LRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTL 936 Query: 152 TSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKRVRHIMEQGMVAIGHI 211 FL+ L ++G++VV+ P + I +G + R + R + + I Sbjct: 937 EFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPI 996 Query: 212 IQNLQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIESATSPIMETISGLSI 271 + ET+ G+ +++F EE Q +I E + +E + L + Sbjct: 997 YSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVV 1056 Query: 272 AGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRIILEGGMVGVRCMFSLL 331 LF ++ G + G + ++ L + + R LE MV V + Sbjct: 1057 LIAALF--AVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYT 1114 Query: 332 DHPIMIEESPHAVNLPVG---KGTTVFRDVFFSYKQGHP-VLSGINLCFKSGKMTALVGP 387 D P P KG F D+ Y+ P VL GI+ K G+ +VG Sbjct: 1115 DIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGR 1174 Query: 388 SGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNI 447 +G+GKS++I L R+ +P+ G I IDG++I I LR R+S + QD LFS TVR+N+ Sbjct: 1175 TGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNL 1234 Query: 448 LIGRPMA--TEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAML 505 P +++E+ E + D + SLP G D+ V E G N S GQ+Q + +ARA+L Sbjct: 1235 ---DPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALL 1291 Query: 506 RDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKV 565 R ILVLDEAT+++D T+ L+++ + + T + IAHR++T++++D ++ ++ G+V Sbjct: 1292 RKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRV 1351 Query: 566 SESGDQKYLLQQKDGSLYK 584 E LL KD Sbjct: 1352 VEFDSPAELLSDKDSLFSS 1370 Score = 180 bits (458), Expect = 1e-45 Identities = 121/522 (23%), Positives = 231/522 (44%), Gaps = 27/522 (5%) Query: 79 VAGIFIVKGIASFVQN---YYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVR 135 +F+ + S + + + G + + IYR+ L+ E+ Sbjct: 245 AVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNL 304 Query: 136 FTHATQSVRSVVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVK 195 + Q + F+ L ++ + +++ +L + + L I L K Sbjct: 305 MSVDAQRLSDAA-CFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAK 363 Query: 196 RVRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKI 255 ++ ++ M I+ + E + GI+++K +A E+ +++ ++ ++ L K A + Sbjct: 364 KIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYL 423 Query: 256 ESATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRI 315 + S + + ++ F F++ A + + + P + Sbjct: 424 SALNSFLNFFSP--VLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVIS 481 Query: 316 ILEGGMVGVRCMFSLLDHPIMIEESPHAVNLPVGKGTTVFRDVFFSYKQGH--PVLSGIN 373 L V ++ + L + +S G+ ++ FS+ P L IN Sbjct: 482 QLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDIN 541 Query: 374 LCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVG 433 K G++ A+VGP GSGKS++++ ++ SGS+ ++G ++YV Sbjct: 542 FEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG-------------SVAYVP 588 Query: 434 QDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDF-IMSLPQGYDTYVGENGSNLSG 492 Q ++ + TVR NIL G P +EE + A A + LP G T +GE G NLSG Sbjct: 589 QQPWIQNGTVRENILFGSPY--DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSG 646 Query: 493 GQKQRIAIARAMLRDGHILVLDEATSALDTHTEN-LVRQALSRLMQGRTTIVIAHRISTI 551 GQKQRI++ARA+ +D I +LD+ SA+D H + + + L++G+T I++ H++ + Sbjct: 647 GQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFL 706 Query: 552 IEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLE 593 AD II ++DGK+ ESG + LL K G + ++ + E Sbjct: 707 PHADQIIVLKDGKIVESGTYEELL--KSGGDFAELAHEEESE 746 >gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]. Length = 573 Score = 247 bits (632), Expect = 6e-66 Identities = 144/572 (25%), Positives = 252/572 (44%), Gaps = 28/572 (4%) Query: 30 KHVTWYSMSIVAMITVSLMT----SCSAWIMRDVMNAMVASTDIFHVIVVSSTVAGIFIV 85 +H + IV I L + + S W + +A+ IF+V++ S+ V G+ I+ Sbjct: 13 RHKFGLLLGIVLAILTLLASIGLLTLSGWFI--SASAIAGLAYIFNVMLPSAGVRGLAIL 70 Query: 86 KGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRS 145 + A +V+ A +++ + +++ +L +S +L R + Sbjct: 71 RTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLV-------A 123 Query: 146 VVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKRVRHIMEQGM 205 VD +LR V +V++ + LS +I + L L + +L+ + + + Sbjct: 124 DVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAG 183 Query: 206 VAIGHIIQNLQET--------VIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIES 257 G + + V G + F E+ + K A+ Sbjct: 184 RKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTG 243 Query: 258 ATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRIIL 317 + I+ I+GL + G++L+ G + + A E + +A Sbjct: 244 LSDAILLLIAGLLVIGLLLWMA-AQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQH 302 Query: 318 EGGMV-GVRCMFSLLDHPIMIEESPHAVNLPVGKGTTVFRDVFFSY-KQGHPVLSGINLC 375 G ++ R + +LD E + R+V F+Y Q L NL Sbjct: 303 LGQVIASARRLNDILDQKP--EVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLT 360 Query: 376 FKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQD 435 G+ A++G SGSGKST++ LL +DP GSI ++G+ I + +LRE IS + Q Sbjct: 361 LAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQR 420 Query: 436 VFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQK 495 V LFS T+R N+ + P A++EE+ + + S P G +T++GE G LSGG++ Sbjct: 421 VHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGER 480 Query: 496 QRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEAD 555 +R+A+ARA+L D + +LDE T LD TE V L +G+T +++ HR+ + D Sbjct: 481 RRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMD 540 Query: 556 HIIFIEDGKVSESGDQKYLLQQKDGSLYKKMY 587 II +++GK+ E G LL YK++Y Sbjct: 541 RIIVLDNGKIIEEGTHAELLANNG--RYKRLY 570 >gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 171 Score = 230 bits (589), Expect = 8e-61 Identities = 102/212 (48%), Positives = 133/212 (62%), Gaps = 43/212 (20%) Query: 354 VFRDVFFSYK-QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI 412 F++V FSY + PVL ++L K G+ A+VGPSGSGKST++ LL+R+YDP+SG I I Sbjct: 2 EFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILI 61 Query: 413 DGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFI 472 DG+++RD+ SLR+ I+YV QD FLFS T+R NI Sbjct: 62 DGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------- 96 Query: 473 MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL 532 LSGGQ+QRIAIARA+LRD IL+LDEATSALD TE L+ +AL Sbjct: 97 -----------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL 139 Query: 533 SRLMQGRTTIVIAHRISTIIEADHIIFIEDGK 564 L +G+T IVIAHR+STI +AD II ++DG+ Sbjct: 140 RALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 >gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.. Length = 226 Score = 228 bits (583), Expect = 3e-60 Identities = 100/218 (45%), Positives = 140/218 (64%), Gaps = 2/218 (0%) Query: 350 KGTTVFRDVFFSY--KQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSS 407 KG F++V F+Y + VL ++ G++TALVGPSGSGKST++ LL Y P Sbjct: 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG 68 Query: 408 GSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSAN 467 G + +DG I L ++S VGQ+ LF+ +++ NI G + E + E A+ A+ Sbjct: 69 GQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAH 128 Query: 468 AHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527 AH FI L GYDT VGE GS LSGGQKQR+AIARA++R+ +L+LDEATSALD +E Sbjct: 129 AHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188 Query: 528 VRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKV 565 V+QAL + RT +VIAHR+ST+ AD I+ ++ G++ Sbjct: 189 VQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 >gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.. Length = 237 Score = 227 bits (579), Expect = 9e-60 Identities = 106/238 (44%), Positives = 149/238 (62%), Gaps = 3/238 (1%) Query: 354 VFRDVFFSYKQGHP-VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI 412 F V F YK P +L I+L K G++ +VG SGSGKST+ L+ R Y P +G + + Sbjct: 2 TFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLV 61 Query: 413 DGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFI 472 DG ++ + LR ++ V Q+ LF+ ++R NI + P + E +IE AK A AHDFI Sbjct: 62 DGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFI 121 Query: 473 MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL 532 LP+GYDT VGE G+ LSGGQ+QRIAIARA++ + IL+ DEATSALD +E+ + + + Sbjct: 122 SELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNM 181 Query: 533 SRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQ 590 + GRT I+IAHR+ST+ AD II +E G++ E G LL + LY +Y Q Sbjct: 182 HDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE--NGLYAYLYQLQ 237 >gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.. Length = 220 Score = 216 bits (552), Expect = 1e-56 Identities = 93/216 (43%), Positives = 139/216 (64%), Gaps = 1/216 (0%) Query: 355 FRDVFFSYK-QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEID 413 FR+V FSY Q P L ++L ++G+ A++G GSGKST++ LL +Y P+SGS+ +D Sbjct: 5 FRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLD 64 Query: 414 GINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIM 473 G +IR + + LR I YV QDV LF T+R NI +G P+A +E ++ A+ A DF+ Sbjct: 65 GTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVN 124 Query: 474 SLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALS 533 P G D +GE G LSGGQ+Q +A+ARA+L D IL+LDE TSA+D ++E +++ L Sbjct: 125 KHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR 184 Query: 534 RLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESG 569 +L+ +T I+I HR S + D II ++ G++ G Sbjct: 185 QLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 >gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.. Length = 221 Score = 211 bits (539), Expect = 5e-55 Identities = 90/220 (40%), Positives = 134/220 (60%), Gaps = 2/220 (0%) Query: 351 GTTVFRDVFFSYKQG-HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGS 409 G F++V Y+ PVL I+ K G+ +VG +GSGKS+++ L R+ + SSGS Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60 Query: 410 IEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAH 469 I IDG++I I LR RIS + QD LFS T+R N L ++EE+ + + Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSN-LDPFGEYSDEELWQALERVGLK 119 Query: 470 DFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVR 529 +F+ SLP G DT V E G NLS GQ+Q + +ARA+LR ILVLDEAT+++D T+ L++ Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 179 Query: 530 QALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESG 569 + + + T + IAHR+ TII++D I+ ++ G+V E Sbjct: 180 KTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFD 219 >gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]. Length = 580 Score = 200 bits (510), Expect = 1e-51 Identities = 139/564 (24%), Positives = 259/564 (45%), Gaps = 53/564 (9%) Query: 41 AMITVSLMTSC-------SAWIMRDVMNAMVASTDIFHVIVVSSTVAGIFIVKGIASFVQ 93 A I V L ++ M V + ++ S + +++++ G++ +G+ ++ Sbjct: 24 AFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIR 83 Query: 94 NYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSVVDIFITS 153 + L G + + ++ S + + ++ + D+ Sbjct: 84 SRVLVRIGERLDRQLNGPVFA-------------ASFSAPLLRRGSGDGLQPLRDL---D 127 Query: 154 FLRDFLTLVGL------------IVVMFLQEPTLSLCTIIIGPLCILGVRILVKRV-RHI 200 +R FLT GL + V+FL P L L + G + ++ + +L +R R Sbjct: 128 QVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGL-IALAGAIILVVLALLNERATRKP 186 Query: 201 MEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIESATS 260 +++ A Q T+ ++++ M + +R + + A Sbjct: 187 LKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFG 246 Query: 261 PIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRIILEG- 319 + + +++ +L G + KG G +++ ++L + +A + + Sbjct: 247 ALSRALR-MALQSAVLGLGAWLVIKGEITPGMMIA--GSILSG----RALAPIDLAIANW 299 Query: 320 -GMVGVRCMFSLLDHPIMIEESPHA---VNLPVGKGTTVFRDVFFSYKQGH-PVLSGINL 374 V R + L+ ++ E P A + LP +G + + P+L GI+ Sbjct: 300 KQFVAARQSYKRLNE--LLAELPAAAERMPLPAPQGALSVERLTAAPPGQKKPILKGISF 357 Query: 375 CFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQ 434 ++G+ ++GPSGSGKST+ LL+ ++ P+SGS+ +DG ++R L I Y+ Q Sbjct: 358 ALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQ 417 Query: 435 DVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQ 494 DV LF T+ NI A E++IE A+ A H+ I+ LPQGYDT +GE G+ LSGGQ Sbjct: 418 DVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQ 477 Query: 495 KQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRL-MQGRTTIVIAHRISTIIE 553 +QRIA+ARA+ D ++VLDE S LD+ E + A+ +G T +VIAHR S + Sbjct: 478 RQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALAS 537 Query: 554 ADHIIFIEDGKVSESGDQKYLLQQ 577 D I+ ++DG+++ G ++ +L + Sbjct: 538 VDKILVLQDGRIAAFGPREEVLAK 561 >gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.. Length = 204 Score = 162 bits (411), Expect = 3e-40 Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 20/217 (9%) Query: 354 VFRDVFFSYKQG----HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGS 409 D F++ G L INL G++ A+VGP GSGKS++++ L+ + SGS Sbjct: 2 SVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGS 61 Query: 410 IEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAH 469 + + G I+YV Q+ ++ + T+R NIL G+P EE ++ K+ Sbjct: 62 VSVPG-------------SIAYVSQEPWIQNGTIRENILFGKPF-DEERYEKVIKACALE 107 Query: 470 DFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTEN-LV 528 + LP G T +GE G NLSGGQKQRI++ARA+ D I +LD+ SA+D H + Sbjct: 108 PDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIF 167 Query: 529 RQAL-SRLMQGRTTIVIAHRISTIIEADHIIFIEDGK 564 + L+ +T I++ H++ + AD I+ +++G+ Sbjct: 168 ENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 >gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.. Length = 173 Score = 152 bits (386), Expect = 2e-37 Identities = 72/212 (33%), Positives = 105/212 (49%), Gaps = 44/212 (20%) Query: 356 RDVFFSYKQG-HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414 +V F Y PVL ++ + G+ A++GPSGSGKST+ L++ + P+SG + +DG Sbjct: 4 ENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDG 63 Query: 415 INIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMS 474 +I + L + + Y+ QD LFS ++ NIL Sbjct: 64 ADISQWDPNELGDHVGYLPQDDELFSGSIAENIL-------------------------- 97 Query: 475 LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSR 534 SGGQ+QR+ +ARA+ + ILVLDE S LD E + QA++ Sbjct: 98 ----------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAA 141 Query: 535 L-MQGRTTIVIAHRISTIIEADHIIFIEDGKV 565 L G T IVIAHR T+ AD I+ +EDG+V Sbjct: 142 LKAAGATRIVIAHRPETLASADRILVLEDGRV 173 >gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.. Length = 257 Score = 147 bits (372), Expect = 8e-36 Identities = 81/214 (37%), Positives = 124/214 (57%), Gaps = 1/214 (0%) Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLR 426 PVL + K G+ + G +GSGKS++ RM D G I IDGI+I + +LR Sbjct: 35 PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 Query: 427 ERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGEN 486 R+S + QD LFS ++R+N L T++ + E + A + + SLP G D V E Sbjct: 95 SRLSIILQDPILFSGSIRFN-LDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEG 153 Query: 487 GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAH 546 G N S GQ+Q +ARA +R IL++DEAT+++D TEN++++ + RT + IAH Sbjct: 154 GENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAH 213 Query: 547 RISTIIEADHIIFIEDGKVSESGDQKYLLQQKDG 580 R+STI++AD ++ + G + E + LL Q+DG Sbjct: 214 RVSTILDADLVLVLSRGILVECDTPENLLAQEDG 247 >gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.. Length = 207 Score = 146 bits (369), Expect = 2e-35 Identities = 72/203 (35%), Positives = 112/203 (55%), Gaps = 19/203 (9%) Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLR 426 PVL ++ K+G+ +VG +G+GKST+I L R + G IEIDGI+I I LR Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81 Query: 427 ERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGEN 486 ++ + QD LFS T+R N+ ++EE+ + V E Sbjct: 82 SSLTIIPQDPTLFSGTIRSNLDP-FDEYSDEEIYGALR------------------VSEG 122 Query: 487 GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAH 546 G NLS GQ+Q + +ARA+L+ +LVLDEAT+++D T+ L+++ + T + IAH Sbjct: 123 GLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAH 182 Query: 547 RISTIIEADHIIFIEDGKVSESG 569 R+ TII+ D I+ ++ G+V E Sbjct: 183 RLRTIIDYDKILVMDAGEVKEYD 205 >gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.. Length = 211 Score = 146 bits (369), Expect = 2e-35 Identities = 74/218 (33%), Positives = 115/218 (52%), Gaps = 14/218 (6%) Query: 354 VFRDVFFSYKQG-HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI 412 +++ FSY G P L I+L K G+ +VGP+GSGKST++ LL + P+SG + + Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60 Query: 413 DGINIRDITFSSLRERISYVGQ--DVFLFSNTVRYNILIGRPMA--TEEEMIEIAKSANA 468 DG ++ ++ LR ++ V Q D F TV + G EEE+ E + A Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEA-L 119 Query: 469 HDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528 + + + LSGGQKQR+AIA + D IL+LDE T+ LD + Sbjct: 120 ELVGLEGLRDRSPF------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173 Query: 529 RQALSRLM-QGRTTIVIAHRISTIIE-ADHIIFIEDGK 564 + L +L +G+T I++ H + ++E AD +I +EDGK Sbjct: 174 LELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 >gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 235 Score = 144 bits (365), Expect = 6e-35 Identities = 71/235 (30%), Positives = 116/235 (49%), Gaps = 15/235 (6%) Query: 353 TVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI 412 ++ F Y L ++L + G+ L+GP+GSGKST++ LL + P+SG + + Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV 63 Query: 413 DGINIRDITF-SSLRERISYVGQ--DVFLFSNTVRYNILIGRP--MATEEEMIEIAKSAN 467 DG++ LR+++ V Q D LF TV + G EE+ E A Sbjct: 64 DGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEAL 123 Query: 468 AHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527 ++ L + D NLSGGQKQR+AIA + IL+LDE T+ LD Sbjct: 124 E---LVGLEELLDRPP----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE 176 Query: 528 VRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKD 579 + + L +L + G+T I++ H + ++E AD ++ ++DGK+ GD + + Sbjct: 177 LLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDAE 231 >gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]. Length = 293 Score = 143 bits (362), Expect = 1e-34 Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 20/232 (8%) Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414 R++ Y L G++ + G++ L+GP+G+GK+T++ +L + P+SG I + G Sbjct: 7 VRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLG 66 Query: 415 INIRDITFSSLRERISYVGQDVFLFSN-TVRYNI-----LIGRPMATEEEMIEIAKSANA 468 ++ + +R RI YV Q+ L+ TVR N+ L G EE IE Sbjct: 67 YDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLE--- 122 Query: 469 HDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528 + L + V LSGG KQR++IA A+L D +L+LDE TS LD + + Sbjct: 123 ---LFGLEDKANKKV----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI 175 Query: 529 RQALSRLM-QGRTTIVIAHRISTIIE--ADHIIFIEDGKVSESGDQKYLLQQ 577 + L L +G TI+++ I E D +I + DGK+ G + L ++ Sbjct: 176 WELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 >gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 226 Score = 142 bits (361), Expect = 2e-34 Identities = 70/223 (31%), Positives = 117/223 (52%), Gaps = 14/223 (6%) Query: 355 FRDVFFSYKQGH---PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIE 411 ++V Y G L +NL ++G+ A+VGPSGSGKST++NLL + P+SG + Sbjct: 4 LKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVL 63 Query: 412 IDGINIRDITFSSL----RERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSA 466 I+G ++ ++ L R++I +V Q+ L + TV N+ + +A + + Sbjct: 64 INGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAE 123 Query: 467 NAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTEN 526 + + + E LSGGQ+QR+AIARA++ + I++ DE T LD+ T Sbjct: 124 ELLEVLGLEDRLLKKKPSE----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179 Query: 527 LVRQALSRLMQ--GRTTIVIAHRISTIIEADHIIFIEDGKVSE 567 V + L L + G+T I++ H AD +I ++DGK+ E Sbjct: 180 EVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 >gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.. Length = 178 Score = 140 bits (354), Expect = 1e-33 Identities = 69/217 (31%), Positives = 105/217 (48%), Gaps = 41/217 (18%) Query: 354 VFRDVFFSYK-QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI 412 +V FSY Q VL ++L K G+ AL+G SGSGKST++ LL P G I + Sbjct: 2 SINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITL 61 Query: 413 DGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFI 472 DG+ + D+ +L IS + Q +LF T+R N+ Sbjct: 62 DGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL------------------------- 95 Query: 473 MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL 532 G SGG++QR+A+AR +L+D I++LDE T LD TE + + Sbjct: 96 --------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI 141 Query: 533 SRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESG 569 +++ +T I I H ++ I D I+F+E+GK+ G Sbjct: 142 FEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 >gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]. Length = 240 Score = 139 bits (353), Expect = 2e-33 Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 17/224 (7%) Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414 +++ S+ VL GI+L + G++ ++GPSGSGKST++ L + +P SGSI +DG Sbjct: 5 IKNLSKSFGDKE-VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDG 63 Query: 415 INI-RDITFSSLRERISYVGQDVFLFSN-TVRYNILIGRPMAT----EEEMIEIAKSANA 468 ++ LR ++ V Q LF + TV N+ + P+ + E E A Sbjct: 64 EDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA-PVKVKKLSKAEAREKALELLE 122 Query: 469 HDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528 + L D Y + LSGGQ+QR+AIARA+ D +++ DE TSALD V Sbjct: 123 K---VGLADKADAYPAQ----LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEV 175 Query: 529 RQALSRLM-QGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570 + L +G T I++ H + E AD +IF++ GK+ E G Sbjct: 176 LDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGP 219 >gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.. Length = 218 Score = 137 bits (348), Expect = 6e-33 Identities = 74/223 (33%), Positives = 113/223 (50%), Gaps = 19/223 (8%) Query: 355 FRDVFFSYKQG---HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIE 411 +++ +Y G L G++L + G+ A+VGPSGSGKST++N+L + P+SG + Sbjct: 3 LKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVR 62 Query: 412 IDGINIRDITFSSL----RERISYVGQDVFLFSN-TVRYNILIGRPMATE--EEMIEIAK 464 +DG +I ++ L R I +V Q L + T N+ + +A +E E A+ Sbjct: 63 VDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAE 122 Query: 465 SANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHT 524 + L + Y E LSGGQ+QR+AIARA+ D I++ DE T LD+ T Sbjct: 123 ELLER---VGLGDRLNHYPSE----LSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175 Query: 525 ENLVRQALSRL--MQGRTTIVIAHRISTIIEADHIIFIEDGKV 565 V + L L G T +V+ H AD II + DGK+ Sbjct: 176 GKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 >gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]. Length = 258 Score = 137 bits (347), Expect = 8e-33 Identities = 72/237 (30%), Positives = 121/237 (51%), Gaps = 26/237 (10%) Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI 415 ++ F Y G P+L ++ G++T ++GP+GSGKST++ L + P SG + +DG Sbjct: 6 ENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGK 64 Query: 416 NIRDITFSSLRERISYVGQD-VFLFSNTVRYNILIGR----------PMATEEEMIEIAK 464 +I ++ L ++++YV Q F TV +L+GR EE + E + Sbjct: 65 DIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALE 124 Query: 465 SANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHT 524 D V E LSGG++QR+ IARA+ ++ IL+LDE TS LD Sbjct: 125 LLGLEHLA-------DRPVDE----LSGGERQRVLIARALAQETPILLLDEPTSHLDIAH 173 Query: 525 ENLVRQALSRLM--QGRTTIVIAHRIS-TIIEADHIIFIEDGKVSESGDQKYLLQQK 578 + V + L L +G T +++ H ++ ADH+I ++DGK+ G + +L ++ Sbjct: 174 QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEE 230 >gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 242 Score = 137 bits (346), Expect = 1e-32 Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 7/225 (3%) Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414 F +V Y G ++ +NL G+ L+GPSGSGK+T + ++ R+ +P+SG I IDG Sbjct: 3 FENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDG 62 Query: 415 INIRDITFSSLRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIM 473 +IR+ LR +I YV Q + LF + TV NI + P + +I + A+ ++ Sbjct: 63 EDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIAL-VPKLLKWPKEKIRERADELLALV 121 Query: 474 SLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALS 533 L + LSGGQ+QR+ +ARA+ D +L++DE ALD T + +++ Sbjct: 122 GLDPA--EFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFK 179 Query: 534 RLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLL 575 RL Q G+T + + H I AD I +++G++ + G +L Sbjct: 180 RLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224 >gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 178 Score = 134 bits (340), Expect = 5e-32 Identities = 75/216 (34%), Positives = 108/216 (50%), Gaps = 46/216 (21%) Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414 ++V Y Q VL+ ++L ++G++ AL+GPSGSGKST++ + + +P SGSI IDG Sbjct: 3 LKNVSKRYGQ-KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDG 61 Query: 415 INIRDITFSS--LRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDF 471 ++ D+ LR RI V QD LF + TV NI +G Sbjct: 62 EDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG--------------------- 100 Query: 472 IMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQA 531 LSGGQ+QR+A+ARA+ D +L+LDE TSALD T VR Sbjct: 101 ------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRAL 142 Query: 532 LSRL--MQGRTTIVIAHRISTIIE-ADHIIFIEDGK 564 L L G T +++ H + AD ++ + DGK Sbjct: 143 LKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 >gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 213 Score = 134 bits (339), Expect = 7e-32 Identities = 72/212 (33%), Positives = 105/212 (49%), Gaps = 15/212 (7%) Query: 364 QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFS 423 L ++L + G+ AL+GPSG GK+T++ L+ + P SG I IDG RD+T Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDG---RDVTGV 67 Query: 424 SLRER-ISYVGQDVFLFSN-TVRYNILIG-RPMATEEEMIEIAKSANAHDFIMSLPQGYD 480 R I V QD LF + TV NI G + + I ++ L + Sbjct: 68 PPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL--ELVGLEGLLN 125 Query: 481 TYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM--QG 538 Y E LSGGQ+QR+A+ARA+ R+ +L+LDE SALD +R+ L L G Sbjct: 126 RYPHE----LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELG 181 Query: 539 RTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569 TTI + H + AD I + +G++ + G Sbjct: 182 ITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 >gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).. Length = 227 Score = 134 bits (338), Expect = 9e-32 Identities = 70/229 (30%), Positives = 113/229 (49%), Gaps = 21/229 (9%) Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD-----PSSGS 409 RD+ Y H L I+L G++TAL+GPSG GKST++ LL R+ D P G Sbjct: 3 LRDLNVYYGDKH-ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGE 61 Query: 410 IEIDGINIR--DITFSSLRERISYVGQDVFLFSNTVRYNILIG---RPMATEEEMIEIAK 464 + +DG +I D+ LR R+ V Q F ++ N+ G + +EE+ E + Sbjct: 62 VLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVE 121 Query: 465 SANAHDFIMSLPQGYDTYVGE--NGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDT 522 A V + + LSGGQ+QR+ +ARA+ + +L+LDE TSALD Sbjct: 122 EALRKA-------ALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDP 174 Query: 523 HTENLVRQALSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570 + + + ++ L + T +++ H + AD F+ +G++ E G Sbjct: 175 ISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223 >gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]. Length = 352 Score = 132 bits (334), Expect = 2e-31 Identities = 68/225 (30%), Positives = 110/225 (48%), Gaps = 11/225 (4%) Query: 349 GKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSG 408 K R+V S+ + I+L K G+ L+GPSG GK+T++ ++ PSSG Sbjct: 2 PKPALEIRNVSKSF-GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60 Query: 409 SIEIDGINIRDITFSSLRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSAN 467 I +DG +I D+ + I V Q LF + TV N+ G + + + EI Sbjct: 61 EILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118 Query: 468 AHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527 ++ L D + LSGGQ+QR+A+ARA++ + +L+LDE SALD Sbjct: 119 EALELVGLEGFADRKPHQ----LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQ 174 Query: 528 VRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569 +R+ L L + G T + + H + +D I + DG++ + G Sbjct: 175 MRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVG 219 >gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 233 Score = 131 bits (331), Expect = 6e-31 Identities = 68/225 (30%), Positives = 112/225 (49%), Gaps = 12/225 (5%) Query: 358 VFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINI 417 VF L ++L G++ ++G SG+GKST+I + + P+SGS+ +DG ++ Sbjct: 10 VFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDL 69 Query: 418 RDITFSSLRE---RISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIM 473 ++ LR+ RI + Q L S+ TV N+ + +A EI + ++ Sbjct: 70 TLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA-GVPKAEIEERVLELLELV 128 Query: 474 SLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALS 533 L D Y + LSGGQKQR+ IARA+ + +L+ DEATSALD T + L Sbjct: 129 GLEDKADAYP----AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLR 184 Query: 534 RLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLL 575 + + G T ++I H + + D + +E G+V E G + + Sbjct: 185 DINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 >gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 157 Score = 130 bits (329), Expect = 9e-31 Identities = 66/212 (31%), Positives = 98/212 (46%), Gaps = 58/212 (27%) Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414 ++ F Y G L ++L K+G++ ALVGP+GSGKST++ + + P+SG I IDG Sbjct: 2 IENLSFRYG-GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60 Query: 415 INIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMS 474 +I + LR RI Y Sbjct: 61 KDIAKLPLEELRRRIGY------------------------------------------- 77 Query: 475 LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSR 534 +PQ LSGGQ+QR+A+ARA+L + +L+LDE TS LD + + + L Sbjct: 78 VPQ------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE 125 Query: 535 LMQ-GRTTIVIAHRISTIIEA-DHIIFIEDGK 564 L + GRT I++ H A D +I ++DGK Sbjct: 126 LAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 >gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 235 Score = 129 bits (327), Expect = 2e-30 Identities = 74/232 (31%), Positives = 116/232 (50%), Gaps = 12/232 (5%) Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414 R + S+ G VL G++L + G++ A++GPSGSGKST++ L++ + P SG + IDG Sbjct: 3 LRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDG 61 Query: 415 INIRDITFS---SLRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHD 470 +I ++ + LR R+ + Q LF + TV N+ T EI + Sbjct: 62 EDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKL 121 Query: 471 FIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQ 530 + L D Y E LSGG K+R+A+ARA+ D +L+ DE T+ LD ++ Sbjct: 122 EAVGLRGAEDLYPAE----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDD 177 Query: 531 ALSRL--MQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKD 579 + L G T+I++ H + T AD I + DGK+ G + L D Sbjct: 178 LIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDD 229 >gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]. Length = 254 Score = 129 bits (325), Expect = 2e-30 Identities = 64/221 (28%), Positives = 107/221 (48%), Gaps = 30/221 (13%) Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414 ++ SY PVL I+L + G++TAL+GP+G+GKST++ ++ + PSSG I+I G Sbjct: 7 VENLTVSY-GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFG 65 Query: 415 INIRDITFSSLRERISYVGQ-------------DVFLFSNTVRYNILIGRPMATEEEMIE 461 +R R RI YV Q DV L + +E++ E Sbjct: 66 KPVRKR---RKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDE 122 Query: 462 IAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD 521 + D D +GE LSGGQKQR+ +ARA+ ++ +L+LDE + +D Sbjct: 123 ALERVGMEDLR-------DRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVD 171 Query: 522 THTENLVRQALSRL-MQGRTTIVIAHRISTIIE-ADHIIFI 560 + + L L +G+T +++ H + ++ D +I + Sbjct: 172 VAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL 212 >gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.. Length = 213 Score = 128 bits (324), Expect = 4e-30 Identities = 72/210 (34%), Positives = 113/210 (53%), Gaps = 17/210 (8%) Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINI--RDITF 422 VL GI+L K G++ ++GPSGSGKST++ + + +P SG+I IDG+ + Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71 Query: 423 SSLRERISYVGQDVFLFSN-TVRYNILIGRPM----ATEEEMIEIAKSANAHDFIMSLPQ 477 + LR+++ V Q LF + TV NI + P+ ++ E E A + L Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITLA-PIKVKGMSKAEAEERALELLEK---VGLAD 127 Query: 478 GYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ 537 D Y + LSGGQ+QR+AIARA+ + +++ DE TSALD V + L + Sbjct: 128 KADAYPAQ----LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE 183 Query: 538 -GRTTIVIAHRISTIIE-ADHIIFIEDGKV 565 G T +V+ H + E AD +IF++DG++ Sbjct: 184 EGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 >gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]. Length = 309 Score = 128 bits (323), Expect = 5e-30 Identities = 72/228 (31%), Positives = 120/228 (52%), Gaps = 10/228 (4%) Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414 F +V Y + +NL + G+ L+GPSGSGK+T + ++ R+ +P+SG I IDG Sbjct: 4 FENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDG 62 Query: 415 INIRDITFSSLRERISYVGQDVFLFSN-TVRYNI-LIGRPMATEEEMIEIAKSANAHDFI 472 +I D+ LR +I YV Q + LF + TV NI + + + ++E I K A+ + Sbjct: 63 EDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKE--RIKKRADELLDL 120 Query: 473 MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL 532 + L Y LSGGQ+QR+ +ARA+ D IL++DE ALD T +++ + Sbjct: 121 VGLDPS--EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEI 178 Query: 533 SRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQ 577 L + G+T + + H I ++ AD I ++ G++ + +L Sbjct: 179 KELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 >gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.. Length = 180 Score = 126 bits (319), Expect = 1e-29 Identities = 56/217 (25%), Positives = 105/217 (48%), Gaps = 42/217 (19%) Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI 415 ++ Y G VL ++L ++G++ ++GP+G+GKST++ L + PSSG I +DG Sbjct: 3 ENLSVGY-GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK 61 Query: 416 NIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSL 475 ++ ++ L +I+YV Q + Sbjct: 62 DLASLSPKELARKIAYVPQ---------------------------ALELLGLAHL---A 91 Query: 476 PQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRL 535 + ++ LSGG++QR+ +ARA+ ++ IL+LDE TS LD + + + L RL Sbjct: 92 DRPFNE--------LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRL 143 Query: 536 MQ--GRTTIVIAHRIS-TIIEADHIIFIEDGKVSESG 569 + G+T +++ H ++ AD +I ++DG++ G Sbjct: 144 ARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 >gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 248 Score = 126 bits (317), Expect = 2e-29 Identities = 66/215 (30%), Positives = 106/215 (49%), Gaps = 19/215 (8%) Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414 V S+ G VL INL + G+ A++GPSG GKST++ L+ + P+SG + +DG Sbjct: 6 IEGVSKSF-GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDG 64 Query: 415 INIRDITFSSLRERISYVGQDVFLFS-NTVRYNILIGRPMA--TEEEMIEIAKSANAHDF 471 + I YV Q+ L TV N+ +G + ++ E E AK Sbjct: 65 RPVTGP-----GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLE--- 116 Query: 472 IMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQA 531 ++ L D Y + LSGG +QR+AIARA+ +L+LDE ALD T ++ Sbjct: 117 LVGLAGFEDKYPHQ----LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDE 172 Query: 532 LSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDG 563 L RL + +T +++ H + + AD ++ + + Sbjct: 173 LLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 >gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]. Length = 338 Score = 124 bits (312), Expect = 8e-29 Identities = 73/237 (30%), Positives = 120/237 (50%), Gaps = 26/237 (10%) Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414 ++V S+ VL +NL + G+ L+GPSG GKST++ ++ + +P+SG I IDG Sbjct: 6 LKNVRKSFG-SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDG 64 Query: 415 INIRDITFSSLRER-ISYVGQDVFLFSN-TVRYNILIGRPMA------TEEEMIEIAKSA 466 RD+T +R I+ V Q+ L+ + TV NI G + ++ + E+AK Sbjct: 65 ---RDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLL 121 Query: 467 NAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTEN 526 + P LSGGQ+QR+A+ARA++R + +LDE S LD Sbjct: 122 GLEHLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRV 170 Query: 527 LVRQALSRLMQ--GRTTIVIAHR-ISTIIEADHIIFIEDGKVSESGDQKYLLQQKDG 580 L+R + +L + G TTI + H + + AD I+ + DG++ + G L ++ Sbjct: 171 LMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 >gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 241 Score = 124 bits (313), Expect = 8e-29 Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 28/230 (12%) Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414 ++ +Y G L ++L G+ AL+GPSG+GKST++ L + +P+SGS+ IDG Sbjct: 3 VENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDG 62 Query: 415 INIRDITFSSLRE---RISYVGQDVFLFSN-TVRYNILIGR-----------PMATEEEM 459 +I + +LR+ +I + Q L +V N+L GR + +EE Sbjct: 63 TDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE- 121 Query: 460 IEIAKSANAHDFIMSLPQ-GYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATS 518 + A +A L + G + LSGGQ+QR+AIARA+++ +++ DE + Sbjct: 122 KQRALAA--------LERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVA 173 Query: 519 ALDTHTENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKV 565 +LD + V L R+ + G T IV H++ E AD I+ ++DG++ Sbjct: 174 SLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRI 223 >gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 339 Score = 124 bits (312), Expect = 8e-29 Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 26/232 (11%) Query: 355 FRDVFFSYKQG----HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSI 410 +V ++ Q L ++L G++ ++G SG+GKST++ L+ + P+SGS+ Sbjct: 4 LENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63 Query: 411 EIDGINIRDITFSSLRE---RISYVGQDVFLFSN-TVRYNI-----LIGRPMATEEEMIE 461 +DG ++ ++ + LR+ +I + Q L S+ TV N+ L G P A E Sbjct: 64 FVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKA------E 117 Query: 462 IAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD 521 I + ++ L D Y + LSGGQKQR+AIARA+ + IL+ DEATSALD Sbjct: 118 IKQRVAELLELVGLSDKADRYP----AQLSGGQKQRVAIARALANNPKILLCDEATSALD 173 Query: 522 THTENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570 T + + L + + G T ++I H + + D + ++ G++ E G Sbjct: 174 PETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225 >gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.. Length = 213 Score = 124 bits (312), Expect = 8e-29 Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 27/227 (11%) Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414 D+ SY GHPVL ++ K G+ A+VGP+G+GKST++ ++ + P+SGSI + G Sbjct: 2 VEDLTVSY-GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60 Query: 415 INIRDITFSSLRERISYVGQ----------DVFLFSNTVRYNILIGRPMATEEEMIEIAK 464 + R+RI YV Q V Y ++ + AK Sbjct: 61 KPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADK---AK 112 Query: 465 SANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHT 524 A + + G LSGGQ+QR+ +ARA+++D +L+LDE + +D T Sbjct: 113 VDEALERV-----GLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKT 167 Query: 525 ENLVRQALSRL-MQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569 + + + L L +G T +V+ H + ++E D ++ + + V SG Sbjct: 168 QEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL-NRTVVASG 213 >gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]. Length = 539 Score = 123 bits (311), Expect = 1e-28 Identities = 72/234 (30%), Positives = 113/234 (48%), Gaps = 17/234 (7%) Query: 348 VGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSS 407 + K + +F + + ++ + G+ LVG SGSGKST+ +L + PSS Sbjct: 286 LSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSS 345 Query: 408 GSIEIDG--INIRDITFSSLRERISYVGQDVFLFSN---TVRYNILIGRPMATEEEMIEI 462 GSI DG +++ LR RI V QD + N TV ++ P+ Sbjct: 346 GSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGD--ILAEPLRIHGGGSGA 403 Query: 463 AKSANAHDFI--MSLPQGY-DTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSA 519 + A + + + LP + D Y E LSGGQ+QR+AIARA+ + +L+LDE SA Sbjct: 404 ERRARVAELLELVGLPPEFLDRYPHE----LSGGQRQRVAIARALALEPKLLILDEPVSA 459 Query: 520 LDTHTENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570 LD + V L L + G T + I+H ++ + AD + + DG++ E G Sbjct: 460 LDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGP 513 Score = 114 bits (287), Expect = 7e-26 Identities = 60/240 (25%), Positives = 111/240 (46%), Gaps = 30/240 (12%) Query: 359 FFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDP----SSGSIEIDG 414 F + P + ++ + G++ +VG SGSGKST+ LM + +SG + +DG Sbjct: 15 FATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDG 74 Query: 415 INIRDITFSSLRE----RISYVGQD-------VFLFSNTVRYNILIGRPMATEE---EMI 460 ++ ++ +R+ RI+ + QD V + +R + + + E + Sbjct: 75 RDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAV 134 Query: 461 EIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSAL 520 E+ + D P+ D Y + LSGG +QR+ IA A+ +L+ DE T+AL Sbjct: 135 ELLEQVGLPD-----PERRDRYPHQ----LSGGMRQRVMIAMALALKPKLLIADEPTTAL 185 Query: 521 DTHTENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQ 577 D T+ + L L + G + I H + + E AD ++ + G++ E+G + +L Sbjct: 186 DVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245 >gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]. Length = 345 Score = 123 bits (310), Expect = 1e-28 Identities = 67/210 (31%), Positives = 112/210 (53%), Gaps = 10/210 (4%) Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLR 426 L I+L KSG++ AL+GPSG+GKST++ ++ + P +G I ++G + D++ ++R Sbjct: 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR 75 Query: 427 ER-ISYVGQDVFLFSN-TVRYNILIG-RPMATEEEMIEIAKSANAHDFIMSLPQGYDTYV 483 +R + +V Q LF + TV NI G + EI ++ L D Y Sbjct: 76 DRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP 135 Query: 484 GENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--GRTT 541 + LSGGQ+QR+A+ARA+ + +L+LDE ALD +R+ L +L G TT Sbjct: 136 ----AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTT 191 Query: 542 IVIAHRISTIIE-ADHIIFIEDGKVSESGD 570 + + H +E AD ++ + G++ + G Sbjct: 192 VFVTHDQEEALELADRVVVLNQGRIEQVGP 221 >gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.. Length = 205 Score = 123 bits (309), Expect = 2e-28 Identities = 68/215 (31%), Positives = 110/215 (51%), Gaps = 20/215 (9%) Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGIN 416 ++ FSYK+G +L ++L +G++ AL G +G+GK+T+ +L + SSGSI ++G Sbjct: 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG-- 61 Query: 417 IRDITFSSLRERISYVGQDV--FLFSNTVRYNILIGRPMATEEEMI--EIAKSANAHDFI 472 + I R+ I YV QDV LF+++VR +L+G + K + + Sbjct: 62 -KPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALK 120 Query: 473 MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL 532 P +LSGGQKQR+AIA A+L +L+ DE TS LD V + + Sbjct: 121 ERHPL-----------SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELI 169 Query: 533 SRLM-QGRTTIVIAHRISTIIE-ADHIIFIEDGKV 565 L QG+ IVI H + + D ++ + +G + Sbjct: 170 RELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204 >gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 173 Score = 122 bits (309), Expect = 2e-28 Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 46/213 (21%) Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI 415 R++ Y L I+L + G++ L+GP+G+GK+T+I +++ + P SG I++ G Sbjct: 4 RNLSKRYG-KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGK 62 Query: 416 NIRDITFSSLRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMS 474 +I+ ++ RI Y+ ++ L+ N TVR N+ Sbjct: 63 DIKK-EPEEVKRRIGYLPEEPSLYENLTVRENL--------------------------- 94 Query: 475 LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSR 534 LSGG KQR+A+A+A+L D +L+LDE TS LD + + L Sbjct: 95 --------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRE 140 Query: 535 LMQGRTTIVIAHRISTIIE--ADHIIFIEDGKV 565 L + TI+++ I E D + + +G++ Sbjct: 141 LKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 >gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.. Length = 228 Score = 122 bits (308), Expect = 3e-28 Identities = 66/223 (29%), Positives = 105/223 (47%), Gaps = 17/223 (7%) Query: 359 FFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIR 418 F + L ++ K G+ LVG SGSGKST+ ++ + P+SGSI DG ++ Sbjct: 11 FPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLL 70 Query: 419 DIT---FSSLRERISYVGQDVFLFSN---TVRYNI---LIGRPMATEEEMIEIAKSANAH 469 ++ R+ I V QD N T+ I L +++E + A Sbjct: 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLV 130 Query: 470 DFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVR 529 + + + Y E LSGGQ+QR+AIARA+ + +L+ DE TSALD + + Sbjct: 131 GVGLP-EEVLNRYPHE----LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQIL 185 Query: 530 QALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569 L +L + G T + I H + + + AD + + GK+ E G Sbjct: 186 DLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 >gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]. Length = 500 Score = 122 bits (307), Expect = 3e-28 Identities = 76/219 (34%), Positives = 112/219 (51%), Gaps = 23/219 (10%) Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424 G L G++L + G++ AL+G +G+GKST++ +L +Y P SG I IDG + + FSS Sbjct: 20 GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDG---KPVAFSS 76 Query: 425 LRER----ISYVGQDVFLFSN-TVRYNILIGRPMAT------EEEMIEIAKSANAHDFIM 473 R+ I+ V Q++ L N +V NI +GR + M A+ A + Sbjct: 77 PRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD 136 Query: 474 SLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTH-TENLVRQAL 532 P DT VG +LS Q+Q + IARA+ D +L+LDE T+AL TE L Sbjct: 137 IDP---DTLVG----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIR 189 Query: 533 SRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570 QG I I+HR+ + E AD I + DG+V + Sbjct: 190 RLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 Score = 68.6 bits (168), Expect = 5e-12 Identities = 47/216 (21%), Positives = 102/216 (47%), Gaps = 20/216 (9%) Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG--INIRDITF 422 G + ++ ++G++ + G G+G++ + L SSG I +DG + IR Sbjct: 271 GGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRD 330 Query: 423 SSLRERISYVGQD-----VFLFSNTVRYNILIG--RPMATEEEMIEIAKSANAHDFIMSL 475 + ++ I+YV +D + L ++ NI + R + + + A A +I L Sbjct: 331 A-IKAGIAYVPEDRKSEGLVL-DMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRL 388 Query: 476 ---PQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL 532 + +G LSGG +Q++ +AR + D +L+LDE T +D + + + + Sbjct: 389 RIKTPSPEQPIG----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLI 444 Query: 533 SRLM-QGRTTIVIAHRISTIIE-ADHIIFIEDGKVS 566 L +G+ ++I+ + ++ +D I+ + +G++ Sbjct: 445 RELAAEGKAILMISSELPELLGLSDRILVMREGRIV 480 >gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 220 Score = 120 bits (303), Expect = 1e-27 Identities = 60/211 (28%), Positives = 101/211 (47%), Gaps = 17/211 (8%) Query: 355 FRDVFFSYKQG---HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIE 411 R+V +Y G L I+L + G+ ALVGPSG GKST++ ++ + P+SG + Sbjct: 3 VRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVL 62 Query: 412 IDGINIRDITFSSLRERISYVGQDVFLFS-NTVRYNILIGRPMATEEEMIEIAKSANAHD 470 +DG + YV Q L TV N+ +G + + ++ + Sbjct: 63 VDGEPVTGP-----GPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLE 117 Query: 471 FIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQ 530 + G + LSGG +QR+A+ARA+ D +L+LDE SALD T +++ Sbjct: 118 LV-----GLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQE 172 Query: 531 ALSRLMQ--GRTTIVIAHRIS-TIIEADHII 558 L + + G+T +++ H I + AD ++ Sbjct: 173 ELLDIWRETGKTVLLVTHDIDEAVFLADRVV 203 >gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.. Length = 275 Score = 120 bits (301), Expect = 2e-27 Identities = 70/231 (30%), Positives = 120/231 (51%), Gaps = 7/231 (3%) Query: 351 GTTVFRDVFFSYKQ-GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGS 409 G +D+ Y + G+ VL I+ G+ L+G +GSGKST+++ +R+ + + G Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59 Query: 410 IEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMA--TEEEMIEIAKSAN 467 I+IDG++ + R+ + Q VF+FS T R N+ P ++EE+ ++A+ Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNL---DPYGKWSDEEIWKVAEEVG 116 Query: 468 AHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527 I P D + + G LS G KQ + +AR++L IL+LDE ++ LD T + Sbjct: 117 LKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176 Query: 528 VRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQK 578 +R+ L + T I+ HRI ++E + IE+ KV + + LL +K Sbjct: 177 IRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEK 227 >gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 263 Score = 119 bits (299), Expect = 3e-27 Identities = 74/243 (30%), Positives = 120/243 (49%), Gaps = 33/243 (13%) Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414 R V S+ +L G++L G++ A++G SGSGKST++ L++ + P G I IDG Sbjct: 11 VRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDG 69 Query: 415 INIRDIT---FSSLRERISYVGQDVFLFSN-TVRYNILIGRPMA-----TEEEMIEIAKS 465 +I ++ +R+R+ + Q LFS+ TV N + P+ E + E+ Sbjct: 70 EDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFEN--VAFPLREHTKLPESLIRELV-- 125 Query: 466 ANAHDFIMSL------PQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSA 519 +M L D Y E LSGG ++R+A+ARA+ D +L LDE TS Sbjct: 126 ------LMKLELVGLRGAAADLYPSE----LSGGMRKRVALARAIALDPELLFLDEPTSG 175 Query: 520 LDTHTENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQ 576 LD + ++ + + L G T I++ H + +++ AD + + DGKV G + LL Sbjct: 176 LDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 Query: 577 QKD 579 D Sbjct: 236 SDD 238 >gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.. Length = 218 Score = 117 bits (294), Expect = 9e-27 Identities = 68/212 (32%), Positives = 119/212 (56%), Gaps = 8/212 (3%) Query: 359 FFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIR 418 +FS+ G LS IN+ +G++T +VG G GKS+++ ++ G + N Sbjct: 7 YFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNES 66 Query: 419 DITFSSLRER----ISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMS 474 + +F + R R ++Y Q +L + TV NI G P ++ + + + I Sbjct: 67 EPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPF-NKQRYKAVTDACSLQPDIDL 125 Query: 475 LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTH-TENLVRQALS 533 LP G T +GE G NLSGGQ+QRI +ARA+ ++ +I+ LD+ SALD H +++L+++ + Sbjct: 126 LPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGIL 185 Query: 534 RLMQG--RTTIVIAHRISTIIEADHIIFIEDG 563 + +Q RT +++ H++ + AD II ++DG Sbjct: 186 KFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217 >gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 258 Score = 117 bits (294), Expect = 1e-26 Identities = 74/258 (28%), Positives = 124/258 (48%), Gaps = 26/258 (10%) Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414 +++ +Y GH L +NL G+M A++GPSG+GKST++ L + DP+SG I +G Sbjct: 6 VKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNG 65 Query: 415 INIRDITFSSLRE---RISYVGQDVFLFSN-TVRYNILIGR-----------PMATEEEM 459 + I + LR+ I + Q L +V N+L+GR + ++E+ Sbjct: 66 VQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKED- 124 Query: 460 IEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSA 519 A A D + + G + S LSGGQ+QR+AIARA+++ I++ DE ++ Sbjct: 125 -----KAQALDALERV--GILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVAS 177 Query: 520 LDTHTENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQ 576 LD + V L + Q G T IV H++ + AD II ++ G++ G L Sbjct: 178 LDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD 237 Query: 577 QKDGSLYKKMYASQLLEN 594 + +Y + + Sbjct: 238 EALDEIYGNEISEDINRG 255 >gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 239 Score = 116 bits (293), Expect = 1e-26 Identities = 68/211 (32%), Positives = 109/211 (51%), Gaps = 15/211 (7%) Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLR 426 L ++L SG++ AL+GPSGSGK+T++ L+ + P SG+I G D T ++ Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGG---EDATDVPVQ 72 Query: 427 ER-ISYVGQDVFLFSN-TVRYNILIG---RPMATEEEMIEIAKSANAHDFIMSLPQGYDT 481 ER + +V Q LF + TV N+ G +P + EI + ++ L D Sbjct: 73 ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR 132 Query: 482 YVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--GR 539 Y + LSGGQ+QR+A+ARA+ + +L+LDE ALD +R+ L RL Sbjct: 133 YPAQ----LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHV 188 Query: 540 TTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569 TT+ + H +E AD ++ + G++ + G Sbjct: 189 TTVFVTHDQEEALEVADRVVVMNKGRIEQVG 219 >gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 253 Score = 116 bits (293), Expect = 1e-26 Identities = 73/237 (30%), Positives = 112/237 (47%), Gaps = 32/237 (13%) Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSS-----GS 409 RD+ Y H L INL K+TAL+GPSG GKST++ L RM D G Sbjct: 10 VRDLNLYYGDKH-ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGE 68 Query: 410 IEIDGINIRD--ITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMA--TEEEMIEIA-- 463 + +DG NI D + LR R+ V Q F ++ N+ G + ++E+ EI Sbjct: 69 VLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVES 128 Query: 464 --KSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD 521 K A D + + ++ LSGGQ+QR+ IARA+ +L++DE TSALD Sbjct: 129 SLKKAALWDEVKDR-------LHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALD 181 Query: 522 THTENLVRQALSRLMQGRTTIVIAH------RISTIIEADHIIFIEDGKVSESGDQK 572 + + + ++ L + T +++ H R+S D+ F G++ E G Sbjct: 182 PISTLKIEELITELKKKYTIVIVTHNMQQAARVS-----DYTAFFYLGELVEFGPTD 233 >gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.. Length = 214 Score = 116 bits (293), Expect = 1e-26 Identities = 70/218 (32%), Positives = 111/218 (50%), Gaps = 11/218 (5%) Query: 354 VFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEID 413 F +V +Y G L GIN+ +G+ LVGPSG+GKST++ L+ + P+SG+I ++ Sbjct: 2 EFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVN 61 Query: 414 GINI---RDITFSSLRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAH 469 G ++ R LR +I V QD L + V N+ + T EI K A Sbjct: 62 GQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEV-TGVPPREIRKRVPAA 120 Query: 470 DFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVR 529 ++ L + E LSGG++QR+AIARA++ IL+ DE T LD T + Sbjct: 121 LELVGLSHKHRALPAE----LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIM 176 Query: 530 QALSRLMQGRTTIVIAHRISTIIEA--DHIIFIEDGKV 565 L ++ + TT+V+A +++ +I +E GK+ Sbjct: 177 NLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 >gnl|CDD|144311 pfam00664, ABC_membrane, ABC transporter transmembrane region. This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 275 Score = 115 bits (291), Expect = 3e-26 Identities = 66/269 (24%), Positives = 117/269 (43%), Gaps = 2/269 (0%) Query: 37 MSIVAMITVSLMTSCSAWIMRDVMNAMVASTDIFHVIVVSSTVAGIFIVKGIASFVQNY- 95 + I+ +I ++ +++++ ++S + I + +Q Sbjct: 3 IGILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQGSF 62 Query: 96 YLSCA-GNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSVVDIFITSF 154 YL G I R + R++L M F+D+N EL R T+ +R + + F Sbjct: 63 YLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLF 122 Query: 155 LRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKRVRHIMEQGMVAIGHIIQN 214 + T+VG ++VMF L+L + I PL IL +L K +R + + A Sbjct: 123 FQSLATVVGGLIVMFYYGWKLTLVLLAILPLLILLSAVLAKILRKLNRKEQKAYAKAGSV 182 Query: 215 LQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIESATSPIMETISGLSIAGI 274 +E++ GIR VK+F EE +R +++ E K A I + I + IS LS A Sbjct: 183 AEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAIIAGLSFGITQFISYLSYALA 242 Query: 275 ILFSGFLMSKKGTSNAGEIMSFITALLMA 303 + F G+L G + G + +F++ L Sbjct: 243 LWFGGYLSVISGGLSVGTVFAFLSLGLQL 271 >gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]. Length = 231 Score = 115 bits (290), Expect = 3e-26 Identities = 79/234 (33%), Positives = 125/234 (53%), Gaps = 28/234 (11%) Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGIN 416 DV FSY GH + +L +G++ A++GPSG+GKST++NL+ P+SG I I+G Sbjct: 6 DVRFSY--GHLPMR-FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILING-- 60 Query: 417 IRDITFSSLRER-ISYVGQDVFLFSN-TVRYNILIG-----RPMATEEEMIE-IAKSANA 468 D T S ER +S + Q+ LF++ TV NI +G + A + E +E A Sbjct: 61 -VDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGL 119 Query: 469 HDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528 F+ LP LSGGQ+QR+A+AR ++R+ IL+LDE SALD + Sbjct: 120 AGFLKRLP-----------GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEM 168 Query: 529 RQALSRLM--QGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKD 579 +S+L + T +++ H AD ++F+++G+++ G + LL K Sbjct: 169 LALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 >gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]. Length = 223 Score = 116 bits (291), Expect = 3e-26 Identities = 65/225 (28%), Positives = 109/225 (48%), Gaps = 27/225 (12%) Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414 F +V +Y G L ++ G+ L GPSG+GKST++ L+ P+ G I ++G Sbjct: 4 FENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNG 63 Query: 415 INI-----RDITFSSLRERISYVGQDVFLFSN-TVRYNI-----LIGRPMAT-EEEMIEI 462 ++ R+I F LR +I V QD L + TV N+ +IG+P + E+ Sbjct: 64 HDLSRLKGREIPF--LRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEV 121 Query: 463 AKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDT 522 +LP S LSGG++QR+AIARA++ +L+ DE T LD Sbjct: 122 LDLVGLKHKARALP-----------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDP 170 Query: 523 HTENLVRQALSRLMQGRTTIVIA-HRISTIIEADH-IIFIEDGKV 565 + + + + TT+++A H + + H ++ +EDG++ Sbjct: 171 DLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRL 215 >gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 211 Score = 115 bits (289), Expect = 5e-26 Identities = 61/221 (27%), Positives = 105/221 (47%), Gaps = 22/221 (9%) Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGIN 416 ++ Y + L G++L G M L+GP+G+GK+T++ +L + PSSG+I IDG + Sbjct: 5 NLTKRYGKKR-ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQD 62 Query: 417 IRDITFSSLRERISYVGQDVFLFSNT-----VRYNILIGRPMATE--EEMIEIAKSANAH 469 + LR RI Y+ Q+ ++ N + Y + + E + E+ + N Sbjct: 63 VLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG 121 Query: 470 DFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVR 529 D +G LSGG ++R+ IA+A++ D IL++DE T+ LD R Sbjct: 122 DR-------AKKKIGS----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFR 170 Query: 530 QALSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569 LS L + R I+ H + + + + + GK+ G Sbjct: 171 NLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 >gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 269 Score = 111 bits (278), Expect = 8e-25 Identities = 66/214 (30%), Positives = 111/214 (51%), Gaps = 13/214 (6%) Query: 372 INLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE---- 427 ++L + G++ ++G SGSGKST++ + R+ +P+SG + IDG +I ++ LRE Sbjct: 43 VSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 Query: 428 RISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGEN 486 +IS V Q L + TV N+ G + ++A A + ++ L Y E Sbjct: 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALE-LVGLEGWEHKYPDE- 160 Query: 487 GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRL--MQGRTTIVI 544 LSGG +QR+ +ARA+ D IL++DEA SALD ++ L RL +T + I Sbjct: 161 ---LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFI 217 Query: 545 AHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQ 577 H + + D I ++DG++ + G + +L Sbjct: 218 THDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 >gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]. Length = 613 Score = 110 bits (277), Expect = 8e-25 Identities = 76/239 (31%), Positives = 120/239 (50%), Gaps = 17/239 (7%) Query: 352 TTVFRDVFFSYKQGH----PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPS- 406 FR++ S K+ +L G++ K G++ A++GPSGSGK+T++N L + Sbjct: 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGL 84 Query: 407 --SGSIEIDGINIRDITFSSLRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIA 463 SG I ++G R S R+ YV QD L TVR + + + + Sbjct: 85 KLSGEILLNG---RPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEE 141 Query: 464 KSANAHDFI--MSLPQGYDTYVG-ENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSAL 520 K + I + L + DT +G LSGG+++R++IA +L D IL LDE TS L Sbjct: 142 KRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201 Query: 521 DTHTENLVRQALSRLMQ-GRTTIVIAHRISTIIEA--DHIIFIEDGKVSESGDQKYLLQ 576 D+ + V Q L RL + GRT I H+ S+ + D ++ + +G+V SG + LL+ Sbjct: 202 DSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE 260 >gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]. Length = 546 Score = 110 bits (275), Expect = 2e-24 Identities = 107/510 (20%), Positives = 198/510 (38%), Gaps = 58/510 (11%) Query: 80 AGIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHA 139 G+ ++ ++S + L+ G I + + + +++L +E + S+ L T Sbjct: 55 LGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSD 114 Query: 140 TQSVRSVVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKRVRH 199 +++ S + ++ + +G + P + L T++ + I G +L+ RV Sbjct: 115 VRNI-SFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYK 173 Query: 200 IMEQGMVAIGHIIQNLQETVIGIRIVKSFA--MEEVMNQRMCNMIKEVEDRLNKVAKIES 257 M + + Q + G + + E V N +E + + Sbjct: 174 HMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRA-NTFH 232 Query: 258 ATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRIIL 317 + I L + G++ F + ++ + A I + L Sbjct: 233 LLAVNWSNIMLLGLIGLV----FWL-------------ALSLGWASTNVAATIVLVLLFL 275 Query: 318 EG---GMVGVRCMFSL----LDHPIMIEESPHAVNLPVGK-----GTTVFRDVFFSYKQG 365 VG+ + +E +P+ + P + T R+V F+Y+ Sbjct: 276 RTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDWKTLELRNVRFAYQDN 335 Query: 366 HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSL 425 + INL K G++ L+G +GSGKST+ LL +Y P SG I +DG + Sbjct: 336 AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDY 395 Query: 426 RERISYVGQDVFLFSNTVRYNILIGRPMATEE------EMIEIAKSANAHDFIMSLPQGY 479 R+ S V D LF + A+ + + +E+A + +D S Sbjct: 396 RKLFSAVFSDYHLFDQLLG-----PEGKASPQLIEKWLQRLELAHKTSLNDGRFSN---- 446 Query: 480 DTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM--Q 537 LS GQK+R+A+ A+L + ILVLDE + D Q L L+ Q Sbjct: 447 --------LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQ 498 Query: 538 GRTTIVIAHRISTIIEADHIIFIEDGKVSE 567 G+T I+H I AD ++ + +G++SE Sbjct: 499 GKTIFAISHDDHYFIHADRLLEMRNGQLSE 528 >gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.. Length = 282 Score = 110 bits (275), Expect = 2e-24 Identities = 65/210 (30%), Positives = 111/210 (52%), Gaps = 17/210 (8%) Query: 357 DVFFSY--KQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414 ++FFS G PVL INL + G+M A+ G +GSGK++++ L++ +PS G I+ G Sbjct: 39 NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG 98 Query: 415 INIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMS 474 RIS+ Q ++ T++ NI+ G E + K+ + I Sbjct: 99 -------------RISFSSQFSWIMPGTIKENIIFGVSY-DEYRYKSVVKACQLEEDITK 144 Query: 475 LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTEN-LVRQALS 533 P+ +T +GE G LSGGQ+ RI++ARA+ +D + +LD LD TE + + Sbjct: 145 FPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVC 204 Query: 534 RLMQGRTTIVIAHRISTIIEADHIIFIEDG 563 +LM +T I++ ++ + +AD I+ + +G Sbjct: 205 KLMANKTRILVTSKMEHLKKADKILILHEG 234 >gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.. Length = 194 Score = 109 bits (275), Expect = 2e-24 Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 43/205 (20%) Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLM--RMYDPSSGSIEIDGINIRDITFSS 424 +L ++ K G++TA++GPSG+GKST++N L R SG + I+G + +F Sbjct: 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSF-- 80 Query: 425 LRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYV 483 R+ I YV QD L TVR ++ +A Sbjct: 81 -RKIIGYVPQDDILHPTLTVRETLMF---------------AAKL--------------- 109 Query: 484 GENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ-GRTTI 542 LSGG+++R++IA ++ + +L LDE TS LD+ + V L RL GRT I Sbjct: 110 ----RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTII 165 Query: 543 VIAHRISTIIEA--DHIIFIEDGKV 565 H+ S+ I D ++ + G+V Sbjct: 166 CSIHQPSSEIFELFDKLLLLSQGRV 190 >gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 252 Score = 109 bits (273), Expect = 3e-24 Identities = 77/248 (31%), Positives = 118/248 (47%), Gaps = 21/248 (8%) Query: 356 RDVFFSYKQGH---PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI 412 R++ Y G L+ ++L + G+ +VG SGSGKST+ LL + PSSGSI + Sbjct: 7 RNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILL 66 Query: 413 DGINI-RDITFSSLRERISYVGQDVFLFSN---TVRYNILIGRPMATEEEMIEIAKSANA 468 DG + + + V QD + N TV ++ P+ + A Sbjct: 67 DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGR--ILSEPLRPHGLSKSQQRIAEL 124 Query: 469 HDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528 D + P D E LSGGQ+QRIAIARA++ + +L+LDE TSALD + + Sbjct: 125 LDQVGLPPSFLDRRPHE----LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180 Query: 529 RQALSRLMQGR--TTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKDGSLYKK 585 L L + R T + I+H ++ + D I +++G++ E G + LL S Sbjct: 181 LNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL-----SHPSH 235 Query: 586 MYASQLLE 593 Y +LLE Sbjct: 236 PYTRELLE 243 >gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 352 Score = 108 bits (270), Expect = 6e-24 Identities = 68/231 (29%), Positives = 112/231 (48%), Gaps = 20/231 (8%) Query: 372 INLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRD----ITFSSLRE 427 N + +TAL GPSGSGK+++IN++ + P G IE++G + D I + Sbjct: 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKR 76 Query: 428 RISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGEN 486 RI YV QD LF + TVR N+ G + + ++ + P Sbjct: 77 RIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYP---------- 126 Query: 487 GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQG-RTTIV-I 544 LSGG+KQR+AI RA+L +L++DE ++LD + + L RL I+ + Sbjct: 127 -GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV 185 Query: 545 AHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKDGSLYK-KMYASQLLE 593 +H + ++ AD ++ +E+GKV SG + + D + + S +LE Sbjct: 186 SHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPDFPPWLPREEQSSVLE 236 >gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.. Length = 220 Score = 107 bits (268), Expect = 1e-23 Identities = 62/229 (27%), Positives = 111/229 (48%), Gaps = 19/229 (8%) Query: 354 VFRDVFFSYKQG-HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI 412 R++ +YK+G P + ++L G++ L+G +G+GK+T + +L P+SG+ I Sbjct: 2 QIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYI 61 Query: 413 DGINIRDITFSSLRERISYVGQDVFLFSN-TVR-----YNILIGRPMATEEEMIEIAKSA 466 +G +IR + R+ + Y Q LF TVR Y L G P + +E +E+ Sbjct: 62 NGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLR- 119 Query: 467 NAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTEN 526 ++ L + LSGG K+++++A A++ +L+LDE TS LD + Sbjct: 120 -----VLGLTDKANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRR 170 Query: 527 LVRQALSRLMQGRTTIVIAHRISTI-IEADHIIFIEDGKVSESGDQKYL 574 + + + +GR+ I+ H + D I + DGK+ G + L Sbjct: 171 AIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 >gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 211 Score = 106 bits (266), Expect = 2e-23 Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 22/221 (9%) Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGIN 416 + FSY G + +L F G++TA+VGPSGSGKST++NL+ P SG + I+G+ Sbjct: 5 KIRFSY--GEQPMH-FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGV- 60 Query: 417 IRDITFSSLRER-ISYVGQDVFLFSN-TVRYNILIGRPMA---TEEEMIEIAKSANAHDF 471 D+T + +R +S + Q+ LF++ TV N+ +G T E+ I + Sbjct: 61 --DVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALAR--- 115 Query: 472 IMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQA 531 G LSGG++QR+A+AR ++RD +L+LDE +ALD + Sbjct: 116 -----VGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDL 170 Query: 532 LSRL--MQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569 + L T +++ H+ A ++F+++G+++ G Sbjct: 171 VLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 >gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]. Length = 501 Score = 106 bits (266), Expect = 2e-23 Identities = 64/213 (30%), Positives = 109/213 (51%), Gaps = 20/213 (9%) Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS---- 424 ++L K G++ AL+G +G+GKST++ +L +Y P SG I +DG +++ S Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDG---KEVRIKSPRDA 76 Query: 425 LRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMS---LPQGYD 480 +R I V Q L TV NI++G ++ +I+ ++ + LP D Sbjct: 77 IRLGIGMVHQHFMLVPTLTVAENIILGLE-PSKGGLIDRRQARARIKELSERYGLPVDPD 135 Query: 481 TYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSAL-DTHTENLVRQALSRLM-QG 538 V + LS G++QR+ I +A+ R +L+LDE T+ L + L + L RL +G Sbjct: 136 AKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELF-EILRRLAAEG 190 Query: 539 RTTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570 +T I I H++ ++ AD + + GKV + D Sbjct: 191 KTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 Score = 70.6 bits (173), Expect = 1e-12 Identities = 50/249 (20%), Positives = 110/249 (44%), Gaps = 13/249 (5%) Query: 347 PVGKGTTVF--RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD 404 P G V D+ ++G + ++ ++G++ + G +G+G+S ++ + + Sbjct: 250 PSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK 309 Query: 405 PSSGSIEIDGINIRDITFSSLRER--ISYVGQDVF----LFSNTVRYNILIGRPMATEEE 458 P+SG I ++G ++ R R ++YV +D + ++ N+++GR Sbjct: 310 PASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFS 369 Query: 459 MIEIAKSANAHDFIMSLPQGYDTYVGENGS---NLSGGQKQRIAIARAMLRDGHILVLDE 515 F L + +D + +LSGG +Q++ +AR + R +L+ + Sbjct: 370 RGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQ 429 Query: 516 ATSALDTHTENLVRQALSRL-MQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKY 573 T LD + + L L G+ ++I+ + I+E +D I I +G++ + Sbjct: 430 PTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489 Query: 574 LLQQKDGSL 582 +++ G L Sbjct: 490 ATREEIGLL 498 >gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]. Length = 268 Score = 105 bits (264), Expect = 3e-23 Identities = 60/214 (28%), Positives = 93/214 (43%), Gaps = 43/214 (20%) Query: 360 FSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRD 419 F K+ + G++ K G+ LVG SG GKST+ L++ + +P+SG I +G +I Sbjct: 20 FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK 79 Query: 420 ITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGY 479 ++ RER+ E++E Sbjct: 80 LSKEERRERV---------------------------LELLEKVGLPEEF---------L 103 Query: 480 DTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ-- 537 Y E LSGGQ+QRI IARA+ + ++V DE SALD + + L L + Sbjct: 104 YRYPHE----LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL 159 Query: 538 GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570 G T + I+H +S + +D I + GK+ E G Sbjct: 160 GLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGP 193 >gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 316 Score = 105 bits (263), Expect = 4e-23 Identities = 57/238 (23%), Positives = 103/238 (43%), Gaps = 23/238 (9%) Query: 359 FFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDP-----SSGSIEID 413 F + + G++ K G++ +VG SGSGKS + +M + G I D Sbjct: 11 FPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFD 70 Query: 414 GINIRDITFSSLRE----RISYVGQD-------VFLFSNTVRYNILIGRPMATEEEMIEI 462 G ++ ++ LR+ I+ + QD V + + + + +++E E Sbjct: 71 GKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKER 130 Query: 463 AKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDT 522 A I + +Y E LSGG +QR+ IA A+ + +L+ DE T+ALD Sbjct: 131 AIELLELVGIPDPERRLKSYPHE----LSGGMRQRVMIAMALALNPKLLIADEPTTALDV 186 Query: 523 HTENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQ 577 + + L L + G I+I H + + E AD + + G++ E G + + + Sbjct: 187 TVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244 >gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.. Length = 222 Score = 105 bits (263), Expect = 5e-23 Identities = 68/222 (30%), Positives = 105/222 (47%), Gaps = 26/222 (11%) Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLR 426 +L G++L G++ AL+G +G+GK+T++ +M + P SGSI DG RDIT Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDG---RDITGLPPH 70 Query: 427 ER----ISYVGQDVFLFSN-TVRYNILIG---RPMATEEEMIEIAKSANAHDFIMSLPQG 478 ER I YV + +F TV N+L+G R A + +E ++ L + Sbjct: 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLE-----RVYELFPRLKER 125 Query: 479 YDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQG 538 G LSGG++Q +AIARA++ +L+LDE + L + +A+ L Sbjct: 126 RKQLAG----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE 181 Query: 539 RTTIVI----AHRISTIIEADHIIFIEDGKVSESGDQKYLLQ 576 TI++ A I AD +E G+V G LL Sbjct: 182 GVTILLVEQNARFALEI--ADRAYVLERGRVVLEGTAAELLA 221 >gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 235 Score = 104 bits (262), Expect = 5e-23 Identities = 66/216 (30%), Positives = 108/216 (50%), Gaps = 25/216 (11%) Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT-FSSLR 426 L ++L + G ++GP+GSGKS ++ + P SG I ++G +DIT + Sbjct: 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNG---KDITNLPPEK 70 Query: 427 ERISYVGQDVFLFSN-TVRYNILIGRPMAT------EEEMIEIAKSANAHDFIMSLPQGY 479 ISYV Q+ LF + TV NI G E +++EIA+ + P+ Sbjct: 71 RDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPE-- 128 Query: 480 DTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ-- 537 LSGG++QR+AIARA++ + IL+LDE SALD T+ +R+ L ++ + Sbjct: 129 ---------TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEF 179 Query: 538 GRTTIVIAHRISTI-IEADHIIFIEDGKVSESGDQK 572 G T + + H AD + + +GK+ + G + Sbjct: 180 GVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPE 215 >gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]. Length = 386 Score = 104 bits (261), Expect = 7e-23 Identities = 68/211 (32%), Positives = 110/211 (52%), Gaps = 17/211 (8%) Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE- 427 ++ +L + G++ ++G SGSGKST++ LL R+ +P+ G I +DG +I ++ + LRE Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103 Query: 428 ---RISYVGQDVFLFSN-TVRYNILIGRPMA--TEEEMIEIAKSANAHDFIMSLPQGYDT 481 +IS V Q L + TV N+ G + + E E A A ++ L D Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALE---LVGLEGYADK 160 Query: 482 YVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--GR 539 Y E LSGG +QR+ +ARA+ D IL++DEA SALD ++ L L + Sbjct: 161 YPNE----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKK 216 Query: 540 TTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569 T + I H + + D I ++DG++ + G Sbjct: 217 TIVFITHDLDEALRIGDRIAIMKDGEIVQVG 247 >gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains. Length = 119 Score = 104 bits (261), Expect = 7e-23 Identities = 48/129 (37%), Positives = 70/129 (54%), Gaps = 13/129 (10%) Query: 393 STIINLLMRMYDPSSGSIEIDGINIRDI-TFSSLRERISYVGQDVFLFSN-TVRYNILIG 450 ST++ L+ + P+SG+I +DG + D+ + +LR+RI V QD LF TVR N+ G Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTDLSSRKALRKRIGVVFQDPQLFPELTVRENLFFG 60 Query: 451 -RPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGH 509 R + E + DF+ P LSGGQKQR+AIARA+L+ Sbjct: 61 LRDKEADARAEEALERVGLPDFLDRSP----------VGTLSGGQKQRVAIARALLKKPK 110 Query: 510 ILVLDEATS 518 +L+LDE T+ Sbjct: 111 LLLLDEPTA 119 >gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).. Length = 236 Score = 103 bits (258), Expect = 2e-22 Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 19/220 (8%) Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424 G L ++ + G++ L+GP+G+GK+T+ NL+ P+SGS+ DG DIT Sbjct: 12 GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDG---EDITGLP 68 Query: 425 LRER----ISYVGQDVFLFSN-TVRYNILIGRPMATEEEMI-------EIAKSANAHDFI 472 E I Q LF TV N+++ T ++ E A + + Sbjct: 69 PHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELL 128 Query: 473 MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSAL-DTHTENLVRQA 531 + G LS GQ++R+ IARA+ D +L+LDE + L TE L Sbjct: 129 ERV--GLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELI 186 Query: 532 LSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570 +G T +++ H + ++ AD + ++ G+V G Sbjct: 187 RELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 >gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 223 Score = 102 bits (256), Expect = 2e-22 Identities = 61/216 (28%), Positives = 108/216 (50%), Gaps = 10/216 (4%) Query: 362 YKQ-GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI 420 Y +L+ I+L ++G+ A+ GPSG GKST++ ++ + P+SG++ +G ++ + Sbjct: 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL 70 Query: 421 TFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYD 480 + R+++SY Q LF +TV N++ + A D + D Sbjct: 71 KPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAAL-----DLLARFALP-D 124 Query: 481 TYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM--QG 538 + + +N + LSGG+KQRIA+ R + IL+LDE TSALD + + + + R + Q Sbjct: 125 SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQN 184 Query: 539 RTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKY 573 + I H I AD +I ++ G E + + Sbjct: 185 VAVLWITHDKDQAIRHADKVITLQPGHAGEMQEARQ 220 >gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.. Length = 226 Score = 102 bits (257), Expect = 2e-22 Identities = 58/210 (27%), Positives = 108/210 (51%), Gaps = 13/210 (6%) Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDP---SSGSIEIDGINIRDITFSS 424 +L+ ++L +SG++ A++G SGSGK+T+++ + + +SG I +G + F Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF-- 79 Query: 425 LRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYV 483 ++ ++YV QD L TVR + + + + + D ++ T + Sbjct: 80 -QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLR--DLALTRI 136 Query: 484 GENG-SNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ-GRTT 541 G N +SGG+++R++IA +L D +L+LDE TS LD+ T + LS+L + R Sbjct: 137 GGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIV 196 Query: 542 IVIAHRI-STIIEA-DHIIFIEDGKVSESG 569 I+ H+ S + D I+ + G++ SG Sbjct: 197 ILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 >gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 214 Score = 102 bits (256), Expect = 3e-22 Identities = 57/200 (28%), Positives = 95/200 (47%), Gaps = 15/200 (7%) Query: 378 SGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRD----ITFSSLRERISYVG 433 + ++T + G SG+GKST++ + + P G+I ++G + D I + +I V Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81 Query: 434 QDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSG 492 Q LF + VR N+ G E S + ++ L + Y + LSG Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNREDRI---SVDELLDLLGLDHLLNRYPAQ----LSG 134 Query: 493 GQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--GRTTIVIAHRIST 550 G+KQR+A+ARA+ +L+LDE SALD + L ++ + I + H +S Sbjct: 135 GEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSE 194 Query: 551 IIE-ADHIIFIEDGKVSESG 569 AD I+ +EDG++ G Sbjct: 195 AEYLADRIVVMEDGRLQYIG 214 >gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.. Length = 213 Score = 102 bits (256), Expect = 3e-22 Identities = 66/210 (31%), Positives = 107/210 (50%), Gaps = 13/210 (6%) Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424 L +NL G+ L+GPSG GK+T + ++ + +P+SG I I G RD+T Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGG---RDVTDLP 68 Query: 425 LRER-ISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTY 482 ++R I+ V Q+ L+ + TV NI G + + EI + ++ + D Sbjct: 69 PKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKD-EIDERVREVAELLQIEHLLDRK 127 Query: 483 VGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--GRT 540 LSGGQ+QR+A+ RA++R+ + ++DE S LD +R L RL Q G T Sbjct: 128 P----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTT 183 Query: 541 TIVIAH-RISTIIEADHIIFIEDGKVSESG 569 TI + H ++ + AD I + DG++ + G Sbjct: 184 TIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 >gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 252 Score = 102 bits (255), Expect = 3e-22 Identities = 68/233 (29%), Positives = 116/233 (49%), Gaps = 22/233 (9%) Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI 415 +V SY VL ++L G +T+++GP+G+GKST+++++ R+ SG I IDG+ Sbjct: 5 ENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGL 63 Query: 416 NIRDITFSSLRERISYVGQDVFLFSN-TV-------RYNILIGRPMATEEEMIEIAKSAN 467 + L +++S + Q+ + S TV R+ GR + +I A Sbjct: 64 ELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIE-- 121 Query: 468 AHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527 + L D Y+ E LSGGQ+QR IA + +D ++LDE + LD Sbjct: 122 ----YLHLEDLSDRYLDE----LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQ 173 Query: 528 VRQALSRLMQ--GRTTIVIAHRIS-TIIEADHIIFIEDGKVSESGDQKYLLQQ 577 + + L RL G+T +V+ H I+ +DHI+ +++GKV + G ++Q Sbjct: 174 IMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 >gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 259 Score = 98.4 bits (245), Expect = 5e-21 Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 14/216 (6%) Query: 364 QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFS 423 G +L G++L + G++ A++GP+G+GKST++ L P SG + ++G+ + Sbjct: 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPE 71 Query: 424 SLRERISYVGQDVFL-FSNTVRYNILIGR-PMATEEEMIEIAKSANAHDFIMSLPQGYDT 481 L + + Q+ L F TV+ + +GR P + E E + A ++ Sbjct: 72 ELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ---ALAA-TDLSG 127 Query: 482 YVGENGSNLSGGQKQRIAIARAMLR------DGHILVLDEATSALD-THTENLVRQALSR 534 G + LSGG++QR+ +AR + + G L LDE TSALD H + +R A Sbjct: 128 LAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQL 187 Query: 535 LMQGRTTIVIAHRIS-TIIEADHIIFIEDGKVSESG 569 +G + + H ++ AD I+ + G+V SG Sbjct: 188 AREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASG 223 >gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]. Length = 237 Score = 98.6 bits (246), Expect = 5e-21 Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 10/218 (4%) Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI-TFSSL 425 L G++L + G++ AL+G +G+GK+T++ +M + P SG I DG +I + Sbjct: 17 QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERA 76 Query: 426 RERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVG 484 R I+YV + +F TV N+L+G ++E E + + L Sbjct: 77 RLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDL-----EEVYELFPRLKERRN 131 Query: 485 ENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRL--MQGRTTI 542 + LSGG++Q +AIARA++ +L+LDE + L + +A+ L G T + Sbjct: 132 QRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTIL 191 Query: 543 VIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKD 579 ++ +E AD +E+G++ SG LL D Sbjct: 192 LVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 >gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]. Length = 534 Score = 98.0 bits (244), Expect = 6e-21 Identities = 81/275 (29%), Positives = 126/275 (45%), Gaps = 31/275 (11%) Query: 332 DHPIMIEESPHAVNLPVGKGTTVFRDVFFSYKQGH-PVLSGINLCFKSGKMTALVGPSGS 390 D P+++E V P+ G F H + GI+L + G+ LVG SGS Sbjct: 272 DAPVLLEVEDLRVWFPIKGG-------FLRRTVDHLRAVDGISLTLRRGQTLGLVGESGS 324 Query: 391 GKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS---LRERISYVGQDVFLFSNTVRYNI 447 GKST+ L+R+ PS G I DG +I ++ LR R+ V QD + S + R + Sbjct: 325 GKSTLGLALLRL-IPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPY-GSLSPRMTV 382 Query: 448 --LIGRPMATEEEMIEIA-KSANAHDFIMSL---PQGYDTYVGENGSNLSGGQKQRIAIA 501 +I + E + A + + + + P + Y E SGGQ+QRIAIA Sbjct: 383 GQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHE----FSGGQRQRIAIA 438 Query: 502 RAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHII 558 RA++ +++LDE TSALD + V L L Q G + + I+H ++ + +I Sbjct: 439 RALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVI 498 Query: 559 FIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLE 593 + DGK+ E G + + + Y LL Sbjct: 499 VMRDGKIVEQGPTEAVFANP-----QHEYTRALLA 528 Score = 78.0 bits (192), Expect = 7e-15 Identities = 62/263 (23%), Positives = 113/263 (42%), Gaps = 39/263 (14%) Query: 356 RDVFFSYKQGH---PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRM--YDPS---S 407 R++ ++ Q + GI+ ++G+ ALVG SGSGKS ++ + + S Sbjct: 10 RNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPS 69 Query: 408 GSIEIDGINIRDITFSSLR----ERISYVGQDVFLFSN-----------TVRYNILIGRP 452 GSI DG ++ + LR +I + Q+ N +R + + R Sbjct: 70 GSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRA 129 Query: 453 MATEE--EMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHI 510 A E++E+ + + P LSGGQ+QR+ IA A+ + + Sbjct: 130 AARARALELLELVGIPEPEKRLDAYPH-----------ELSGGQRQRVMIAMALANEPDL 178 Query: 511 LVLDEATSALDTHTENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSE 567 L+ DE T+ALD + + L L G + I H + + + AD + ++ G++ E Sbjct: 179 LIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238 Query: 568 SGDQKYLLQQKDGSLYKKMYASQ 590 +G + L +K+ A++ Sbjct: 239 TGTTETLFAAPQHPYTRKLLAAE 261 >gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 232 Score = 98.3 bits (245), Expect = 6e-21 Identities = 67/219 (30%), Positives = 108/219 (49%), Gaps = 12/219 (5%) Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414 +V Y L G++L K G+ L+GPSG GK+T++ L+ P+SG I +DG Sbjct: 3 LENVSKFYGGFV-ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDG 61 Query: 415 INIRDITFSSLRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIM 473 +I ++ + ++ V Q+ LF + TV NI G + + + A A D + Sbjct: 62 KDITNL--PPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLV- 118 Query: 474 SLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALS 533 + Y S LSGGQ+QR+AIARA++ + +L+LDE ALD ++ L Sbjct: 119 ----QLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELK 174 Query: 534 RLMQ--GRTTIVIAHRIS-TIIEADHIIFIEDGKVSESG 569 RL + G T + + H + +D I + GK+ + G Sbjct: 175 RLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIG 213 >gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]. Length = 245 Score = 96.1 bits (239), Expect = 2e-20 Identities = 62/245 (25%), Positives = 107/245 (43%), Gaps = 11/245 (4%) Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGIN 416 D+ SY + ++ + G++T L+G +G+GK+T++ ++ + P SG + IDG++ Sbjct: 6 DLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVD 65 Query: 417 IRDITFSSLRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSL 475 S +R +I + + L++ T R N+ A + A + L Sbjct: 66 TVRDP-SFVRRKIGVLFGERGLYARLTARENLKY---FARLNGLSRKEIKARIAELSKRL 121 Query: 476 PQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRL 535 Y+ S G KQ++AIARA++ D ILVLDE TS LD T + +L Sbjct: 122 --QLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQL 179 Query: 536 M-QGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG--DQKYLLQQKDGSLYKKMYASQL 591 +GR I +H + + D +I + G+V G + +A +L Sbjct: 180 KNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLEEIFAFALKL 239 Query: 592 LENLS 596 E Sbjct: 240 EEGTF 244 >gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]. Length = 256 Score = 96.1 bits (239), Expect = 3e-20 Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 26/244 (10%) Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT--- 421 H VL G++L +G + +++G SGSGKST + + + PS+GSI ++G IR Sbjct: 18 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKD 77 Query: 422 ----------FSSLRERISYVGQDVFLFSNTVRYNILIGRPM----ATEEEMIEIAKSAN 467 LR R+ V Q L+S+ +I P+ ++ E IE A+ Sbjct: 78 GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYL 137 Query: 468 AHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527 A + + + D Y LSGGQ+QR+AIARA+ + +++ DE TSALD Sbjct: 138 AK---VGIAEKADAYPAH----LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGE 190 Query: 528 VRQALSRLMQ-GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKDGSLYKK 585 V + + L + GRT +V+ H + + + H+IF+ GK+ E G + + K+ Sbjct: 191 VLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQSPRLKQ 250 Query: 586 MYAS 589 +S Sbjct: 251 FLSS 254 >gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]. Length = 530 Score = 96.1 bits (239), Expect = 3e-20 Identities = 62/240 (25%), Positives = 106/240 (44%), Gaps = 30/240 (12%) Query: 346 LPVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDP 405 +GK F +V Y G +L ++ G A+VGP+G+GKST++ LL P Sbjct: 315 KRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP 374 Query: 406 SSGSIEIDGINIRDITFSSLRERISYVGQDV--FLFSNTVRYNILIGRPMATEEEMIEIA 463 SG++++ G + +I Y Q TV + G P E+E+ Sbjct: 375 LSGTVKV-GETV----------KIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEV---- 419 Query: 464 KSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTH 523 A F + + LSGG+K R+ +A+ +L+ ++L+LDE T+ LD Sbjct: 420 -RAYLGRFGFTGED-----QEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIE 473 Query: 524 TENLVRQALSRLMQGRTTIVIAHR---ISTIIEADHIIFIEDGKVSESGDQKYLLQQKDG 580 + + +AL +G T ++++H + + A I +ED G + L+QK Sbjct: 474 SLEALEEALLDF-EG-TVLLVSHDRYFLDRV--ATRIWLVEDKVEEFEGGYEDYLEQKKE 529 Score = 93.0 bits (231), Expect = 2e-19 Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 40/242 (16%) Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424 P+L ++L G+ LVG +G+GKST++ +L +P SG + Sbjct: 15 DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK---------- 64 Query: 425 LRERISYVGQDVFLFSN-TVRYNILIG-RPMATEEEMIEIAKSANAHDFIMSLPQGYDTY 482 R+ Y+ Q+ L TV ++ G + +E A + A L + Sbjct: 65 -GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALL 123 Query: 483 VGENG-----------------------SNLSGGQKQRIAIARAMLRDGHILVLDEATSA 519 +G S+LSGG ++R+A+ARA+L + +L+LDE T+ Sbjct: 124 EELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNH 183 Query: 520 LDTHTENLVRQALSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKV-SESGDQKYLLQQ 577 LD + + L R T IV++H + A HI+ ++ GK+ G+ L+Q Sbjct: 184 LDLESIEWLEDYLKRYP--GTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQ 241 Query: 578 KD 579 K Sbjct: 242 KA 243 >gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.. Length = 218 Score = 94.9 bits (236), Expect = 6e-20 Identities = 51/206 (24%), Positives = 94/206 (45%), Gaps = 11/206 (5%) Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427 + G++ K G++T L+GP+G+GK+T + +L + +P +G +DG + E Sbjct: 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFD----VVKEPAE 75 Query: 428 RISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQ--GYDTYVGE 485 +G F+ +T Y+ L R + K + L G + + Sbjct: 76 ARRRLG---FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR 132 Query: 486 NGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIA 545 S G +Q++AIARA++ D +L+LDE T+ LD +R+ + +L I+ + Sbjct: 133 RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFS 192 Query: 546 HRISTIIEA--DHIIFIEDGKVSESG 569 I +E D ++ + G+V G Sbjct: 193 THIMQEVERLCDRVVVLHRGRVVYEG 218 >gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1391 Score = 94.6 bits (235), Expect = 7e-20 Identities = 72/260 (27%), Positives = 113/260 (43%), Gaps = 45/260 (17%) Query: 336 MIEESPHAVN----LPVGKGTTVFRDVFF--------SYKQGH-PVLSGINLCFKSGKMT 382 +++S H LP + F+DVF+ + G +L+ ++ FK G +T Sbjct: 761 KLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLT 820 Query: 383 ALVGPSGSGKSTIINLLMRMYDPS--SGSIEIDGINIRDITFSSLRERISYVGQ-DVFLF 439 AL+G SG+GK+T++++L G I I G TF YV Q D+ Sbjct: 821 ALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETF---ARVSGYVEQQDIHSP 877 Query: 440 SNTVR------------YNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENG 487 TVR + EE+IE ++ L + D VG G Sbjct: 878 ELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIE----------LLELKEYADALVGLPG 927 Query: 488 SNLSGGQKQRIAIARAML-RDGHILVLDEATSALDTHTENLVRQALSRL-MQGRTTIVIA 545 S LS Q++R+ I ++ IL LDE TS LD+ +V + L +L G+T + Sbjct: 928 SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTI 987 Query: 546 HRIS-TIIEA-DHIIFIEDG 563 H+ S I EA D ++ ++ G Sbjct: 988 HQPSIDIFEAFDELLLLKRG 1007 Score = 71.1 bits (174), Expect = 8e-13 Identities = 65/245 (26%), Positives = 115/245 (46%), Gaps = 19/245 (7%) Query: 337 IEESPHAVNLPVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTII 396 + P VN+ ++ R + K+ +L I+ K G+MT ++GP GSGK+T++ Sbjct: 99 VTYGPTLVNILSNPLESILRMLGKRKKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLL 158 Query: 397 NLLMRMYDP---SSGSIEIDGINIRDITFSSLRERISYVGQ-DVFLFSNTVRYNI-LIGR 451 L D SSG I +G ++++ ++ ++Y + DV TVR + R Sbjct: 159 KALAGKLDNFLKSSGEITYNGHDLKEF---VPKKTVAYNSEQDVHFPELTVRETLDFAAR 215 Query: 452 ---PMATEEEMIEIAKSANAHDFIMS---LPQGYDTYVGENG-SNLSGGQKQRIAIARAM 504 P + +E+ K A D+++ L DT VG + +SGG+++R++I + Sbjct: 216 CKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEML 275 Query: 505 LRDGHILVLDEATSALDTHTENLVRQALSRL--MQGRTTIVIAHRIS--TIIEADHIIFI 560 + IL DE T LD+ T + +AL +L + G T +V + S D +I + Sbjct: 276 VGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILL 335 Query: 561 EDGKV 565 +G Sbjct: 336 SEGYQ 340 >gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]. Length = 257 Score = 94.6 bits (235), Expect = 7e-20 Identities = 59/247 (23%), Positives = 103/247 (41%), Gaps = 23/247 (9%) Query: 338 EESPHAVNLPVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIIN 397 +E + + + ++V G +L ++ G+ A+VGP+G+GK+T+++ Sbjct: 17 KEPKKRHPIEINEPLIELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLS 75 Query: 398 LLMRMYDPSSGSIEIDGINIRDI-TFSSLRERISYVG---QDVFLFSNTVRYNIL----- 448 LL + PSSG + + G T LR+RI V + F TVR +L Sbjct: 76 LLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFA 135 Query: 449 -IGRPMAT-EEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLR 506 IG E + A+ + G +LS G+++R+ IARA+++ Sbjct: 136 SIGIYQEDLTAEDLAAAQW-------LLELLGAKHLADRPFGSLSQGEQRRVLIARALVK 188 Query: 507 DGHILVLDEATSALDTHTENLVRQALSRLMQ---GRTTIVIAHRISTII-EADHIIFIED 562 D +L+LDE LD + L L + + H I H + +++ Sbjct: 189 DPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKE 248 Query: 563 GKVSESG 569 G+V G Sbjct: 249 GEVVAQG 255 >gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.. Length = 208 Score = 93.7 bits (233), Expect = 1e-19 Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 24/214 (11%) Query: 364 QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFS 423 VL I+L K G++ +GP+G+GK+T + +++ + P SG I DG + + Sbjct: 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--I 68 Query: 424 SLRERISYVGQDVFLFSN-TVRYNI-----LIGRPMATEEEMIEIAKSANAHDFIMSLPQ 477 RI + + + N T R N+ L+G +E++++ Sbjct: 69 EALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVV-------------- 114 Query: 478 GYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM- 536 G + S G KQR+ IA A+L + +L+LDE T+ LD +R+ + L Sbjct: 115 GLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD 174 Query: 537 QGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569 QG T ++ +H +S I + AD I I GK+ E G Sbjct: 175 QGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 >gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]. Length = 250 Score = 93.3 bits (232), Expect = 2e-19 Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 28/223 (12%) Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427 ++ ++L + G++ L+GP+G+GK+T+ NL+ Y PSSG++ G RDIT Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRG---RDITGLPPHR 75 Query: 428 R----ISYVGQDVFLFSN-TVRYNILIG------------RPMATEEEMIEIAKSANAHD 470 I+ Q LF TV N+ +G RP A +EE ++ + Sbjct: 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLE 135 Query: 471 FIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSAL-DTHTENLVR 529 F+ G NLS GQ++R+ IARA+ +L+LDE + L TE L Sbjct: 136 FV-----GLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAE 190 Query: 530 QALS-RLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570 R G T ++I H + ++ AD I+ + G+V G Sbjct: 191 LIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233 >gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component [Posttranslational modification, protein turnover, chaperones]. Length = 251 Score = 89.8 bits (223), Expect = 2e-18 Identities = 66/237 (27%), Positives = 107/237 (45%), Gaps = 37/237 (15%) Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLM--RMYDPSSGSIEID 413 +D+ + +L G+NL K G++ A++GP+GSGKST+ +M Y+ + G I D Sbjct: 7 KDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFD 66 Query: 414 GINIRDITFSSLRER--------------ISYVGQDVFLFSNTVRYNILIGRP---MATE 456 G DI S ER I V FL N G Sbjct: 67 G---EDILELSPDERARAGIFLAFQYPVEIPGVTNSDFL---RAAMNARRGARGILPEFI 120 Query: 457 EEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEA 516 +E+ E A+ + + + YV E SGG+K+R I + +L + + +LDE Sbjct: 121 KELKEKAELLGLDEEFL------ERYVNE---GFSGGEKKRNEILQLLLLEPKLAILDEP 171 Query: 517 TSALDTHTENLVRQALSRLMQ-GRTTIVIAH--RISTIIEADHIIFIEDGKVSESGD 570 S LD +V + ++ L + GR ++I H R+ I+ D + + DG++ +SGD Sbjct: 172 DSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGD 228 >gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]. Length = 242 Score = 89.3 bits (221), Expect = 3e-18 Identities = 60/230 (26%), Positives = 107/230 (46%), Gaps = 29/230 (12%) Query: 366 HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT---- 421 H L I L G+ L+GPSG+GKS+++ +L + P SG++ I G N D + Sbjct: 15 HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAG-NHFDFSKTPS 73 Query: 422 ---FSSLRERISYVGQDVFLFSNTVRYNILIGRP-----MATEEEM---IEIAKSANAHD 470 LR + V Q L+ + LI P ++ ++ + ++ K Sbjct: 74 DKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP 133 Query: 471 FIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQ 530 + P +LSGGQ+QR+AIARA++ + +L+ DE T+ALD + Sbjct: 134 YADRYPL-----------HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182 Query: 531 ALSRLMQ-GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQK 578 + L + G T +++ H + + A ++++E+G + E GD + + Sbjct: 183 IIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQ 232 >gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 228 Score = 88.4 bits (219), Expect = 4e-18 Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 14/209 (6%) Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI---TFS 423 +L G+ L K G+ A+VGPSGSGKST++ +L + DPSSG + + G + + + Sbjct: 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83 Query: 424 SLR-ERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFI-MSLPQGYD 480 +LR + +V Q L N T N+ + P+ E +++ + L + Sbjct: 84 ALRARHVGFVFQSFHLIPNLTALENVAL--PLELRGESSADSRAGAKALLEAVGLGKRLT 141 Query: 481 TYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGR- 539 Y + LSGG++QR+A+ARA +L DE T LD T + + L L + R Sbjct: 142 HYPAQ----LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERG 197 Query: 540 -TTIVIAHRISTIIEADHIIFIEDGKVSE 567 T +++ H D + + G++ E Sbjct: 198 TTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 >gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.. Length = 232 Score = 87.1 bits (216), Expect = 1e-17 Identities = 60/228 (26%), Positives = 107/228 (46%), Gaps = 20/228 (8%) Query: 361 SYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI 420 Y V++G++L K G++ L+GP+G+GK+T +++ + P SG I +DG +DI Sbjct: 9 RYG-KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDG---QDI 64 Query: 421 TFSSLRER----ISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANA-HDF-IM 473 T + +R I Y+ Q+ +F TV NIL + + K +F I Sbjct: 65 TKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT 124 Query: 474 SLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALS 533 L + S+LSGG+++R+ IARA+ + L+LDE + +D +++ + Sbjct: 125 HLRK-------SKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIK 177 Query: 534 RLMQGRTTIVIA-HRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKD 579 L ++I H + + D I +GKV G + + + Sbjct: 178 ILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANEL 225 >gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 259 Score = 86.5 bits (214), Expect = 2e-17 Identities = 63/226 (27%), Positives = 105/226 (46%), Gaps = 21/226 (9%) Query: 352 TTVFRDVFFSYKQ-GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSI 410 + SY+ L ++L SG++ ++GPSG GK+T++NL+ PS GSI Sbjct: 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI 62 Query: 411 EIDGINIRDITFSSLRERISYVGQDVFLFS-NTVRYNILIGRPMATEEEMIEIAKSANAH 469 +++G R I + V Q+ L V N+ G + E+ + AH Sbjct: 63 QLNG---RRIEGPGAERGV--VFQNEALLPWLNVIDNVAFGLQLRGIEKA---QRREIAH 114 Query: 470 DFI--MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527 + + L Y+ + LSGG +QR+ IARA+ + +L+LDE ALD T Sbjct: 115 QMLALVGLEGAEHKYIWQ----LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQ 170 Query: 528 VRQALSRLMQ--GRTTIVIAHRI-STIIEADHIIFIE--DGKVSES 568 +++ L L Q G+ ++I H I + A ++ + G+V E Sbjct: 171 MQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVER 216 >gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]. Length = 604 Score = 84.9 bits (210), Expect = 6e-17 Identities = 49/210 (23%), Positives = 88/210 (41%), Gaps = 18/210 (8%) Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414 ++ G +LS +N + G+ + G SG+GK++++ L ++ SG I + Sbjct: 395 LENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA 454 Query: 415 INIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMA--TEEEMIEIAKSANAHDFI 472 + ++ Q +L T+R + ++ E++ + D Sbjct: 455 -----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLA 503 Query: 473 MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL 532 L + LSGG++QR+A AR +L + LDEATSALD TE+ + Q L Sbjct: 504 ERLDE-----EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLL 558 Query: 533 SRLMQGRTTIVIAHRISTIIEADHIIFIED 562 + T I + HR + + + D Sbjct: 559 KEELPDATVISVGHRPTLWNFHSRQLELLD 588 >gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.. Length = 200 Score = 84.0 bits (208), Expect = 1e-16 Identities = 65/228 (28%), Positives = 108/228 (47%), Gaps = 44/228 (19%) Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLM--RMYDPSSGSIEIDGINIRDITF 422 G +L G+NL K G++ AL+GP+GSGKST+ +M Y+ + G I G DIT Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG---EDITD 68 Query: 423 SSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTY 482 ER R I + E ++ A DF+ + +G Sbjct: 69 LPPEER--------------ARLGIFLAFQYPPEIPGVKNA------DFLRYVNEG---- 104 Query: 483 VGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM-QGRTT 541 SGG+K+R I + +L + + +LDE S LD LV + +++L +G++ Sbjct: 105 -------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSV 157 Query: 542 IVIAH--RISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMY 587 ++I H R+ I+ D + + DG++ +SGD++ L+ + KK Y Sbjct: 158 LIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELALE-----IEKKGY 200 >gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.. Length = 163 Score = 83.9 bits (208), Expect = 1e-16 Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 56/203 (27%) Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424 G L G++L + G++ AL+G +G+GKST++ +L +Y P SG I +DG ++++F+S Sbjct: 12 GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDG---KEVSFAS 68 Query: 425 LRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVG 484 R+ V+ S E +M+EI Sbjct: 69 PRDARRAGIAMVYQLS-------------VGERQMVEI---------------------- 93 Query: 485 ENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM-QGRTTIV 543 ARA+ R+ +L+LDE T+AL + + + RL QG I Sbjct: 94 ----------------ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIF 137 Query: 544 IAHRISTIIE-ADHIIFIEDGKV 565 I+HR+ + E AD + + DG+V Sbjct: 138 ISHRLDEVFEIADRVTVLRDGRV 160 >gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 267 Score = 83.9 bits (207), Expect = 1e-16 Identities = 65/254 (25%), Positives = 115/254 (45%), Gaps = 16/254 (6%) Query: 352 TTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIE 411 T +R F + V ++ + G+ A++G +GSGKST+ +L M +P+SG I Sbjct: 13 TFRYRTGLFRRQTVEAVKP-VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEIL 71 Query: 412 IDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNI--LIGRPMATEEEMIEIAKSANAH 469 I+ + +S +RI + QD N R I ++ P+ ++ + Sbjct: 72 INDHPLHFGDYSFRSKRIRMIFQDPNTSLNP-RLRIGQILDFPLRLNTDLEPEQRRKQIF 130 Query: 470 DFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVR 529 + + + + L+ GQKQR+A+ARA++ I++ DEA ++LD +R Sbjct: 131 E-TLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMS----MR 185 Query: 530 QALSRLM------QGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKDGSL 582 L LM QG + I + I I +D ++ + +G+V E G +L L Sbjct: 186 SQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHEL 245 Query: 583 YKKMYASQLLENLS 596 K++ S E L+ Sbjct: 246 TKRLIESHFGEALT 259 >gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]. Length = 249 Score = 81.8 bits (202), Expect = 5e-16 Identities = 54/239 (22%), Positives = 99/239 (41%), Gaps = 40/239 (16%) Query: 360 FSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRD 419 L I+ G+ ++G +G+GKST++ L+ +Y P+SG +++ G Sbjct: 34 GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG----- 88 Query: 420 ITFSSLRERISYV-GQDV-FLFSNTVRYNI-LIGR-----PMATEEEMIEIAKSANAHDF 471 +++ + F T R NI L G +E++ EI + A DF Sbjct: 89 --------KVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDF 140 Query: 472 IMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQA 531 I D V S G R+A + A + IL+LDE + D + Sbjct: 141 I-------DQPVK----TYSSGMYARLAFSVATHVEPDILLLDEVLAVGD---AAFQEKC 186 Query: 532 LSRLM----QGRTTIVIAHRISTIIEA-DHIIFIEDGKVSESGDQKYLLQQKDGSLYKK 585 L RL + +T ++++H + I + D I++E G++ G + ++ + L + Sbjct: 187 LERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEEDLADR 245 >gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 220 Score = 81.8 bits (202), Expect = 5e-16 Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 20/210 (9%) Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRER 428 + G++ + G++ L+GP+G+GK+T I +L + P+SG + G ++ +R R Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP-REVRRR 74 Query: 429 ISYVGQDVFL------FSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTY 482 I V QD+ + + N + L G P A E I+ DF + L + D Sbjct: 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERID-----ELLDF-VGLLEAADRL 128 Query: 483 VGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM--QGRT 540 V SGG ++R+ IAR+++ +L LDE T LD T V + + +L G T Sbjct: 129 V----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT 184 Query: 541 TIVIAHRISTIIE-ADHIIFIEDGKVSESG 569 ++ H + + D + I+ G++ G Sbjct: 185 ILLTTHYMEEAEQLCDRVAIIDHGRIIAEG 214 >gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]. Length = 243 Score = 81.0 bits (200), Expect = 9e-16 Identities = 58/224 (25%), Positives = 112/224 (50%), Gaps = 10/224 (4%) Query: 361 SYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI 420 SYK V++ ++L SG++ L+GP+G+GK+T +++ + P SG I +D +I + Sbjct: 13 SYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKL 71 Query: 421 T-FSSLRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQG 478 R I Y+ Q+ +F TV NI+ E ++ K+ + L + Sbjct: 72 PMHKRARLGIGYLPQEASIFRKLTVEDNIMA----VLEIREKDLKKAERKEELDALLEEF 127 Query: 479 YDTYVGEN-GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ 537 + T++ ++ +LSGG+++R+ IARA+ + ++LDE + +D +++ + L Sbjct: 128 HITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD 187 Query: 538 GRTTIVIA-HRI-STIIEADHIIFIEDGKVSESGDQKYLLQQKD 579 ++I H + T+ D I DGKV G + ++ +D Sbjct: 188 RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNED 231 >gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 263 Score = 80.7 bits (199), Expect = 1e-15 Identities = 55/225 (24%), Positives = 110/225 (48%), Gaps = 13/225 (5%) Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLR 426 L+G++L G ++G +G+GKST++N + P+SG I IDG+++ + + Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRA 79 Query: 427 ERISYVGQDVFLFSN---TVRYNILIGRPMATEEEMIEIAKSANAHDF----IMSLPQGY 479 ++ V QD + T+ N+ + ++ + A + + L G Sbjct: 80 NLLARVFQDPLAGTAPELTIEENLALAE-SRGKKRGLSSALNERRRSSFRERLARLGLGL 138 Query: 480 DTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGR 539 + + + LSGGQ+Q +++ A L IL+LDE T+ALD T V + +++++ Sbjct: 139 ENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEH 198 Query: 540 --TTIVIAHRISTIIE-ADHIIFIEDGKV--SESGDQKYLLQQKD 579 TT+++ H + ++ + +I + GK+ +G++K L D Sbjct: 199 KLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEEKASLTVLD 243 >gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.. Length = 224 Score = 80.2 bits (198), Expect = 2e-15 Identities = 59/212 (27%), Positives = 92/212 (43%), Gaps = 30/212 (14%) Query: 366 HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSL 425 L ++ G+ L+G +G+GKST++ LL +Y P SG++ + G Sbjct: 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG----------- 83 Query: 426 RERISY-----VGQDVFLFSNTVRYNI-LIGRPMATEEEMIEIAKSANAHDFIMSLPQGY 479 R+S G F T R NI L GR + + I+ K +F L Sbjct: 84 --RVSSLLGLGGG---FNPELTGRENIYLNGRLLGLSRKEID-EKIDEIIEF-SELGDFI 136 Query: 480 DTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL-SRLMQG 538 D V S G K R+A A A + IL++DE + D + ++ L L QG Sbjct: 137 DLPV----KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQG 192 Query: 539 RTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569 +T I+++H S+I D + +E GK+ G Sbjct: 193 KTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 >gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 210 Score = 78.3 bits (193), Expect = 5e-15 Identities = 47/202 (23%), Positives = 97/202 (48%), Gaps = 10/202 (4%) Query: 366 HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSL 425 L I+ + G++ L+GP+G+GK+T I +++ + P SG + DG + + ++ Sbjct: 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG---KPLDIAA- 68 Query: 426 RERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGE 485 R RI Y+ ++ L+ + L+ +A + + + +++ L Y + Sbjct: 69 RNRIGYLPEERGLYPKMKVIDQLV--YLAQLKGLKKEEARRRIDEWLERL--ELSEYANK 124 Query: 486 NGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM-QGRTTIVI 544 LS G +Q++ A++ D +L+LDE S LD L++ + L G+T I+ Sbjct: 125 RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILS 184 Query: 545 AHRISTIIE-ADHIIFIEDGKV 565 H++ + E D ++ + G+ Sbjct: 185 THQMELVEELCDRVLLLNKGRA 206 >gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 325 Score = 77.2 bits (190), Expect = 1e-14 Identities = 50/233 (21%), Positives = 100/233 (42%), Gaps = 17/233 (7%) Query: 372 INLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISY 431 I+ G++ +G +G+GKST + +L + P+SG + ++G R R Y Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNG-------KDPFRRREEY 95 Query: 432 VGQDVFLFSN--TVRYNILIGRPMATEEEMIEI--AKSANAHDFIMSLPQGYDTYVGENG 487 + + + +++ + + + EI + A DF+ + + ++ Sbjct: 96 LRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEI-LDLEGFLKWPV 154 Query: 488 SNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGR-TTIVIA- 545 LS GQ+ R +A A+L +L LDE T LD + + +R+ L + R T+++ Sbjct: 155 RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTT 214 Query: 546 HRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQ--KDGSLYKKMYASQLLENL 595 H I D ++ I+ G++ G L +Q ++ ++ L L Sbjct: 215 HIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFSVELKQAKSLSQL 267 >gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).. Length = 166 Score = 75.2 bits (185), Expect = 5e-14 Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 48/208 (23%) Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414 ++ + G +L ++ K G + GPSG+GKS++ L ++ SG I + Sbjct: 3 LENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPE 62 Query: 415 INIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMS 474 E + ++ Q +L T+R ++ P Sbjct: 63 -----------GEDLLFLPQRPYLPLGTLREQLI--YPW--------------------- 88 Query: 475 LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSR 534 LSGG++QR+A AR +L + LDEATSALD +E+ + Q L Sbjct: 89 ------------DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE 136 Query: 535 LMQGRTTIVIAHRISTIIEADHIIFIED 562 L G T I + HR S D ++ ++ Sbjct: 137 L--GITVISVGHRPSLWKFHDRVLDLDG 162 >gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]. Length = 248 Score = 73.9 bits (181), Expect = 1e-13 Identities = 55/212 (25%), Positives = 108/212 (50%), Gaps = 23/212 (10%) Query: 377 KSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQD- 435 ++G++ LVGP+G+GKST++ + M SGSI+ G + + + L +Y+ Q Sbjct: 23 RAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQ 81 Query: 436 VFLFSNTVRYNILIGRPMATEEEMI-EIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQ 494 F+ V + + + +P T E++ ++A + D +G + + LSGG+ Sbjct: 82 TPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGE 130 Query: 495 KQRIAIARAMLR-------DGHILVLDEATSALDTHTENLVRQALSRL-MQGRTTIVIAH 546 QR+ +A +L+ G +L+LDE ++LD ++ + + LS L QG ++ +H Sbjct: 131 WQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSH 190 Query: 547 RIS-TIIEADHIIFIEDGKVSESGDQKYLLQQ 577 ++ T+ A ++ GK+ SG ++ +L Sbjct: 191 DLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 >gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism, General function prediction only]. Length = 885 Score = 73.9 bits (181), Expect = 1e-13 Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 17/200 (8%) Query: 362 YKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIR-DI 420 Y + G++ G+ L+G +G+GK+T +L P+SG I G +I Sbjct: 574 YGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVST 633 Query: 421 TFSSLRERISYVGQDVFLFSN-TVR-----YNILIGRPMATEEEMIEIAKSANAHDFIMS 474 F +R+++ Y Q L+ T R Y L G P + IE Sbjct: 634 DFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLV------- 686 Query: 475 LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSR 534 G Y + SGG K+R++ A A++ D +++LDE ++ LD + ++R Sbjct: 687 ---GLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIAR 743 Query: 535 LMQGRTTIVIAHRISTIIEA 554 L + I++ EA Sbjct: 744 LRKNGKAIILTSHSMEEAEA 763 >gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 213 Score = 73.8 bits (181), Expect = 1e-13 Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 14/188 (7%) Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPS---SGSIEIDGINIRDIT 421 G +L+ +N G++ L+GPSG GKST+++ ++ +G + ++ + Sbjct: 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD--M 71 Query: 422 FSSLRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYD 480 + + +I + QD LF + +V N+L P + A+ A+ + G D Sbjct: 72 LPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGN----ARRNAANAALERS--GLD 125 Query: 481 TYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQ-ALSRLMQ-G 538 ++ + LSGGQ+ R+A+ RA+L L+LDE S LD + RQ S + G Sbjct: 126 GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAG 185 Query: 539 RTTIVIAH 546 T+ + H Sbjct: 186 IPTVQVTH 193 >gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 300 Score = 72.6 bits (178), Expect = 3e-13 Identities = 48/207 (23%), Positives = 94/207 (45%), Gaps = 14/207 (6%) Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427 + I+ G++ L+GP+G+GK+T +++ + +P+ G I +G + + Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEI----KN 72 Query: 428 RISYVGQDVFLFSN-TVRYNIL-IGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGE 485 RI Y+ ++ L+ TV + + + EI K A + + + Sbjct: 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKA--EIQKKLQAWLERLEIVG----KKTK 126 Query: 486 NGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM-QGRTTIVI 544 LS G +Q+I A++ + +L+LDE S LD L++ A+ L +G T I Sbjct: 127 KIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFS 186 Query: 545 AHRISTIIE-ADHIIFIEDGKVSESGD 570 +HR+ + E D ++ ++ G+ G Sbjct: 187 SHRMEHVEELCDRLLMLKKGQTVLYGT 213 >gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]. Length = 209 Score = 72.2 bits (177), Expect = 3e-13 Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 21/185 (11%) Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLR 426 + S ++ +G+ + GP+G+GK+T++ +L + P +G + G I+++ S Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYH 74 Query: 427 ERISYVG-QDVFLFSNTVRYNILIGRPM--ATEEEMIEIAKSANAHDFIMSLPQGYDTYV 483 + + Y+G Q T N+ + + I A + + LP G Sbjct: 75 QALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQ---- 130 Query: 484 GENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTT-- 541 LS GQ++R+A+AR L + +LDE +ALD L+ LM Sbjct: 131 ------LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEG----VALLTALMAAHAAQG 180 Query: 542 -IVIA 545 IV+ Sbjct: 181 GIVLL 185 >gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 202 Score = 72.2 bits (177), Expect = 4e-13 Identities = 48/215 (22%), Positives = 85/215 (39%), Gaps = 37/215 (17%) Query: 363 KQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLL---MRMYDPSSGSIEIDGINIRD 419 + P+L + K G+M ++G GSG ST++ L G I +GI Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPY-K 75 Query: 420 ITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGY 479 I YV ++ F P T E ++ A ++F+ Sbjct: 76 EFAEKYPGEIIYVSEEDVHF------------PTLTVRETLDFALRCKGNEFV------- 116 Query: 480 DTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM--- 536 +SGG+++R++IA A++ +L D +T LD+ T + + + R M Sbjct: 117 --------RGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCI-RTMADV 167 Query: 537 QGRTTIVIAHRISTIIEA--DHIIFIEDGKVSESG 569 TT V ++ S I D ++ + +G+ G Sbjct: 168 LKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 >gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.. Length = 236 Score = 72.2 bits (177), Expect = 4e-13 Identities = 49/220 (22%), Positives = 97/220 (44%), Gaps = 21/220 (9%) Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI 415 + +F + L GI+ + G++ +GP+G+GK+T + +L + P+SG + + G Sbjct: 24 KSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG- 82 Query: 416 NIRDITFSSLRERISYVGQDVFLFS--NTVRYNILIGRPMATEEEMIEIAKSANAHDF-- 471 + R ++ + +F + +++ + + ++ + Sbjct: 83 ------LVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDE 136 Query: 472 ---IMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528 ++ L + DT V LS GQ+ R IA A+L + IL LDE T LD + + Sbjct: 137 LSELLDLEELLDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192 Query: 529 RQALSRLMQGRTTIVI--AHRISTIIE-ADHIIFIEDGKV 565 R L + R T V+ +H + I A ++ I+ G++ Sbjct: 193 RNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232 >gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.. Length = 182 Score = 71.6 bits (176), Expect = 6e-13 Identities = 42/207 (20%), Positives = 90/207 (43%), Gaps = 42/207 (20%) Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424 + ++ ++G++ + G G+G++ + L + P+SG I +DG + +T S Sbjct: 12 VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDG---KPVTRRS 68 Query: 425 LRER----ISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYD 480 R+ I+YV +D R + ++ E + Sbjct: 69 PRDAIRAGIAYVPED--------RKREGLVLDLSVAENIA-------------------- 100 Query: 481 TYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRL-MQGR 539 S LSGG +Q++ +AR + RD +L+LDE T +D + + + + L G+ Sbjct: 101 -----LSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGK 155 Query: 540 TTIVIAHRISTIIE-ADHIIFIEDGKV 565 ++I+ + ++ D I+ + +G++ Sbjct: 156 AVLLISSELDELLGLCDRILVMYEGRI 182 >gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 235 Score = 71.1 bits (174), Expect = 8e-13 Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 27/178 (15%) Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI-------DGINIRD 419 PVL ++L +G+ L GPSGSGKST++ L Y P G I + D + Sbjct: 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 Query: 420 ITFSSLRER-ISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSA--------NAHD 470 +R I YV Q + + ++ + P+ E+A++ N + Sbjct: 85 REVLEVRRTTIGYVSQFLRVIPRVSALDV-VAEPLLARGVPREVARAKAADLLTRLNLPE 143 Query: 471 FIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528 + SL + SGG++QR+ IAR + D IL+LDE T++LD +V Sbjct: 144 RLWSLAP----------ATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVV 191 >gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 192 Score = 70.6 bits (173), Expect = 1e-12 Identities = 50/207 (24%), Positives = 84/207 (40%), Gaps = 44/207 (21%) Query: 363 KQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPS--SGSIEIDGINIRDI 420 +L+ I+ K G +TAL+G SG+GK+T++++L +G I I+G + Sbjct: 17 GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDK- 75 Query: 421 TFSSLRERISYVGQ-DVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGY 479 + + YV Q DV + TVR + SA Sbjct: 76 ---NFQRSTGYVEQQDVHSPNLTVREALRF---------------SALLRG--------- 108 Query: 480 DTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRL-MQG 538 LS Q++R+ I + IL LDE TS LD+ + + L +L G Sbjct: 109 ----------LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSG 158 Query: 539 RTTIVIAHRISTII--EADHIIFIEDG 563 + + H+ S I + D ++ ++ G Sbjct: 159 QAILCTIHQPSASIFEKFDRLLLLKRG 185 >gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 246 Score = 68.8 bits (168), Expect = 4e-12 Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 32/201 (15%) Query: 376 FKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQD 435 ++ ++GP+G GK+T I +L + P G IEI+ + +SY Q Sbjct: 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIE------------LDTVSYKPQ- 68 Query: 436 VFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDF----IMSLPQGYDTYVGENGSNLS 491 I + + I K H + I P + + LS Sbjct: 69 ----------YIKADYEGTVRDLLSSITKDFYTHPYFKTEIAK-PLQIEQILDREVPELS 117 Query: 492 GGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQG--RTTIVIAHRIS 549 GG+ QR+AIA + +D I +LDE ++ LD + + + R + +T V+ H I Sbjct: 118 GGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDII 177 Query: 550 TI-IEADHIIFIEDGKVSESG 569 I AD +I + +G+ S +G Sbjct: 178 MIDYLADRLI-VFEGEPSVNG 197 >gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]. Length = 591 Score = 68.7 bits (168), Expect = 4e-12 Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 32/200 (16%) Query: 376 FKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQD 435 G++ ++GP+G GK+T + LL + P GS E ++SY Q Sbjct: 364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEE--------------DLKVSYKPQY 409 Query: 436 VFL-FSNTVRYNILIGRPMATEEEMI--EIAKSANAHDFIMSLPQGYDTYVGENGSNLSG 492 + + TV + A EI K ++L + V E LSG Sbjct: 410 ISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKP-------LNLEDLLERPVDE----LSG 458 Query: 493 GQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGR--TTIVIAHRIST 550 G+ QR+AIA A+ R+ + +LDE ++ LD +V + + R ++ T +V+ H I Sbjct: 459 GELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYM 518 Query: 551 I-IEADHIIFIEDGKVSESG 569 I +D +I E G+ + G Sbjct: 519 IDYVSDRLIVFE-GEPGKHG 537 Score = 64.8 bits (158), Expect = 6e-11 Identities = 59/230 (25%), Positives = 104/230 (45%), Gaps = 18/230 (7%) Query: 344 VNLPVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMY 403 VNLP + +V Y L + + GK+ ++GP+G GKST + +L Sbjct: 70 VNLP----EELEEEVVHRYGVNGFKLYRLPTP-RPGKVVGILGPNGIGKSTALKILAGEL 124 Query: 404 DPSSGSIE----IDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEM 459 P+ G E D + I+ + L+ + + + +Y LI P + ++ Sbjct: 125 KPNLGRYEDPPSWDEV-IKRFRGTELQNYFKKLYEGELRAVHKPQYVDLI--PKVVKGKV 181 Query: 460 IEIAKSANAHDFIMSLPQ--GYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEAT 517 E+ K + + + G + + + S LSGG+ QR+AIA A+LRD + DE + Sbjct: 182 GELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPS 241 Query: 518 SALDTHTENLVRQALSRLMQ-GRTTIVIAHRISTI-IEAD--HIIFIEDG 563 S LD + + L + G+ IV+ H ++ + +D HI++ E G Sbjct: 242 SYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYGEPG 291 >gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily) [General function prediction only]. Length = 614 Score = 68.4 bits (167), Expect = 5e-12 Identities = 48/232 (20%), Positives = 91/232 (39%), Gaps = 38/232 (16%) Query: 347 PVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPS 406 + + ++V F Y + +N ALVGP+G+GKST++ L+ P+ Sbjct: 384 KIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT 443 Query: 407 SGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSA 466 G + ++ Q + ++ E M+ Sbjct: 444 IGMVS-----------RHSHNKLPRYNQ---------HLAEQLDLDKSSLEFMMPKFPDE 483 Query: 467 NAHDFIMSLPQGYDTYVGENG----------SNLSGGQKQRIAIARAMLRDGHILVLDEA 516 + + S +G G S LS GQ++R+ AR ++ H+L+LDE Sbjct: 484 KELEEMRS-------ILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEP 536 Query: 517 TSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSES 568 T+ LD T + + +A++ G + R+ + + A+ I E+G V++ Sbjct: 537 TNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQV-AEEIWVCENGTVTKW 587 Score = 55.7 bits (134), Expect = 3e-08 Identities = 51/238 (21%), Positives = 92/238 (38%), Gaps = 24/238 (10%) Query: 344 VNLPVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMY 403 V + G ++ + L G+ L+GP+GSGKST + + Sbjct: 66 NLFSHPISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGRE 125 Query: 404 DPSSGSIEI------------DGINIRDITFSSLRERISYVGQDVFLFS---NTVRYNIL 448 P I+ + + R+R+ Y+ +D+ + L Sbjct: 126 VPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDEL 185 Query: 449 IGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDG 508 R + + E AK+A + L + D V +LSGG + R A+ARA+ + Sbjct: 186 YERLDEMDNDTFE-AKAAKILHGLGFLSEMQDKKV----KDLSGGWRMRAALARALFQKP 240 Query: 509 HILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEA--DHIIFIEDGK 564 +L+LDE T+ LD + + L++ R +VI + +II +++ K Sbjct: 241 DLLLLDEPTNHLDLEAIVWLEEYLAKYD--RIILVIVSHSQDFLNGVCTNIIHLDNKK 296 >gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.. Length = 201 Score = 67.3 bits (164), Expect = 1e-11 Identities = 43/196 (21%), Positives = 86/196 (43%), Gaps = 13/196 (6%) Query: 363 KQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITF 422 + G + SG++ +G+ + GP+GSGK+T++ +L + P +G + ++G + D Sbjct: 10 RDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPL-DFQR 68 Query: 423 SSLRERISYVG-QDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDT 481 S+ + Y+G + +V N+ ++E++ E + F P Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF-EDRPVAQ-- 125 Query: 482 YVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTT 541 LS GQ++R+A+AR +L + +LDE T+ALD +A++ Sbjct: 126 --------LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGM 177 Query: 542 IVIAHRISTIIEADHI 557 +V+ + Sbjct: 178 VVLTTHQDLGLSEAGA 193 >gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 261 Score = 67.1 bits (164), Expect = 1e-11 Identities = 67/234 (28%), Positives = 99/234 (42%), Gaps = 46/234 (19%) Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIIN--LLMRMYDPSSGSIEIDGINIRDITFSSLR 426 L I++ G +T + G SGSGKS++IN L + E G N I Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPG-NHDRIEGLEHI 69 Query: 427 ERISYVGQD---------------VF-----LFS---NTVRYN------ILIGRPMA--- 454 +++ + Q VF LF RYN G+ +A Sbjct: 70 DKVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVL 129 Query: 455 --TEEEMIE----IAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLR-- 506 T EE +E I K A + + GY +G+ + LSGG+ QRI +A+ + + Sbjct: 130 DMTVEEALEFFENIPKIARKLQTLCDVGLGYIK-LGQPATTLSGGEAQRIKLAKELSKRS 188 Query: 507 DGHIL-VLDEATSALDTHTENLVRQALSRLM-QGRTTIVIAHRISTIIEADHII 558 G L +LDE T+ L H + + L RL+ +G T +VI H + I AD II Sbjct: 189 TGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWII 242 >gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism, Translation, ribosomal structure and biogenesis]. Length = 582 Score = 65.0 bits (158), Expect = 5e-11 Identities = 58/238 (24%), Positives = 91/238 (38%), Gaps = 54/238 (22%) Query: 355 FRDVFFSYKQGHP-VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEID 413 V F Y + L +S + VG +G GKST++ +L P+ G + Sbjct: 365 ISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRH 424 Query: 414 GINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIM 473 R RI Y + + + K+ NA DF+ Sbjct: 425 P-----------RLRIKY----------------------FAQHHVDFLDKNVNAVDFME 451 Query: 474 SL-----PQGYDTYVGENG----------SNLSGGQKQRIAIARAMLRDGHILVLDEATS 518 + ++G G ++LSGGQK R+A A + H+LVLDE T+ Sbjct: 452 KSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTN 511 Query: 519 ALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEA-DHIIFIEDGKVS--ESGDQKY 573 LD + + +AL G ++++H I + +EDGKV+ E G KY Sbjct: 512 HLDRDSLGALAKALKNFNGG--VVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDKY 567 Score = 63.8 bits (155), Expect = 1e-10 Identities = 46/199 (23%), Positives = 80/199 (40%), Gaps = 22/199 (11%) Query: 349 GKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSG 408 GK + D F G +L+ NL G+ LVG +G GKST L+R Sbjct: 76 GKSKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKST----LLRAI----A 127 Query: 409 SIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANA 468 + ++ G ++ +R + Q V + + + + EI Sbjct: 128 NGQVSGFHVEQ----EVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKI-- 181 Query: 469 HDFIMSLPQGYDTYVGENGSN-LSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527 + L G+ + + LSGG + R+A+ARA+ +L+LDE T+ LD Sbjct: 182 ---LAGL--GFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAW 236 Query: 528 VRQALSRLMQGRTTIVIAH 546 + L T+++++H Sbjct: 237 LENYLQT--WKITSLIVSH 253 >gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism, General function prediction only]. Length = 659 Score = 63.4 bits (154), Expect = 2e-10 Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 29/198 (14%) Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI-NIRDITF- 422 G ++ ++L SG+ + GPSG GK++++ +L ++ + G + +D+ F Sbjct: 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFL 506 Query: 423 --------SSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMS 474 +LR+++ Y + + S + + ++E + + ++ Sbjct: 507 PQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDI--------LRILENVQLGH----LLE 554 Query: 475 LPQGYDTYVGEN-GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALS 533 G D V + LS G++QR+A AR +LDE TSA+ E AL Sbjct: 555 REGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEG----ALY 610 Query: 534 RLMQ--GRTTIVIAHRIS 549 R + G T I + HR S Sbjct: 611 RKCREMGITFISVGHRKS 628 >gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]. Length = 593 Score = 62.7 bits (152), Expect = 2e-10 Identities = 61/231 (26%), Positives = 97/231 (41%), Gaps = 37/231 (16%) Query: 355 FRDVFFSYKQGH-----PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMR-------- 401 F+D+ S+ VL +NL K G + A+VG SG+GK+T++ +++ Sbjct: 380 FQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEE 439 Query: 402 MYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIE 461 Y P SG +E+ + + V L S T G A E Sbjct: 440 KYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKT-------GDLNAAVE---- 488 Query: 462 IAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD 521 I A D ++ Y E LS GQK+R +A+ + ++L++DE + LD Sbjct: 489 ILNRAGLSDAVL-----YRRKFSE----LSTGQKERAKLAKLLAERPNVLLIDEFAAHLD 539 Query: 522 THTENLVRQALSRLMQ--GRTTIVIAHRISTI--IEADHIIFIEDGKVSES 568 T V + +S L + G T IV+ HR + D +I + GKV + Sbjct: 540 ELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVPVN 590 >gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 255 Score = 62.2 bits (151), Expect = 4e-10 Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 10/182 (5%) Query: 377 KSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSI----EIDGINIRDITFSSLRERISYV 432 + G++ LVGP+G GKST + +L P+ G + D I + + S L+ + + Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEI-LDEFRGSELQNYFTKL 82 Query: 433 GQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQ--GYDTYVGENGSNL 490 + +Y LI P A + ++ E+ K + + L + N L Sbjct: 83 LEGDVKVIVKPQYVDLI--PKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQL 140 Query: 491 SGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ-GRTTIVIAHRIS 549 SGG+ QR+AIA A+ RD DE +S LD + + L + +V+ H ++ Sbjct: 141 SGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA 200 Query: 550 TI 551 + Sbjct: 201 VL 202 >gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated. Length = 252 Score = 62.0 bits (151), Expect = 5e-10 Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 33/226 (14%) Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLM--RMYDPSSGSIEIDGINIRDITFSS 424 +L G+NL G++ A++GP+GSGKST+ ++ Y G I G +I D+ Sbjct: 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLE--- 77 Query: 425 LRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIA-----KSANAHDF-------- 471 E +++G +FL +Y I I P + + + +A K + Sbjct: 78 -PEERAHLG--IFL---AFQYPIEI--PGVSNADFLRLAYNSKRKFQGLPELDPLEFLEI 129 Query: 472 ---IMSLPQGYDTYVGEN-GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527 + L +++ N SGG+K+R I + L D + +LDE S LD + Sbjct: 130 INEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKI 189 Query: 528 VRQALSRLM-QGRTTIVIAH--RISTIIEADHIIFIEDGKVSESGD 570 + + +++LM + I+I H R+ I+ D++ +++GK+ ++GD Sbjct: 190 IAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235 >gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]. Length = 807 Score = 61.7 bits (149), Expect = 6e-10 Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 44/223 (19%) Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGIN 416 DV F Y P+ ++ A+VGP+G GKST++ LL+ DP+ G + Sbjct: 591 DVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELR----- 645 Query: 417 IRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLP 476 + +G ++ + EE +E + +LP Sbjct: 646 ---------KNHRLRIG----------WFDQHANEALNGEETPVEYLQRK------FNLP 680 Query: 477 -QGYDTYVGENG----------SNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTE 525 Q +G G +LSGGQK R+A+A L +L+LDE T+ LD + Sbjct: 681 YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESI 740 Query: 526 NLVRQALSRLMQGRTTIVIAHRISTIIEAD-HIIFIEDGKVSE 567 + + +A++ G I+++H I+E D ++ +E+ + E Sbjct: 741 DALAEAINEYNGG--VIMVSHDERLIVETDCNLWVVENQGIDE 781 Score = 47.4 bits (112), Expect = 1e-05 Identities = 58/247 (23%), Positives = 112/247 (45%), Gaps = 27/247 (10%) Query: 364 QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLL--MRMYDPSS-------GSIEIDG 414 QG + +L G+ LVGP+G GK+T++ + + P + + D Sbjct: 275 QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADS 334 Query: 415 INIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMA-TEEEMIEI-AKSANAHDFI 472 + D + ++R++ + ++ L S + + +E+ I A SA A Sbjct: 335 TSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARR 394 Query: 473 MSLPQGYDTYVGENGSN-LSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQA 531 + G+ + E + SGG + R+++ARA+ + +L+LDE T+ LD N V Sbjct: 395 ILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDL---NAVIW- 450 Query: 532 LSRLMQG--RTTIVIAHRISTIIEA-DHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYA 588 L +QG +T ++++H + II ++ +QK + + +L+KKMYA Sbjct: 451 LDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLD--------NQKLHYYRGNYTLFKKMYA 502 Query: 589 SQLLENL 595 ++ E+ Sbjct: 503 QKMQEHE 509 >gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]. Length = 249 Score = 61.4 bits (149), Expect = 6e-10 Identities = 58/228 (25%), Positives = 96/228 (42%), Gaps = 37/228 (16%) Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424 G L+ ++ G++ L+GP+G+GK+T+++++ P G + DG D + Sbjct: 17 GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG----DTDLTK 72 Query: 425 LRE-RISYVG-----QDVFLFSN-TVRYNI-------------LIGRPMATEEEMIEIAK 464 L E RI+ G Q +F N TVR N+ L R A E I+ Sbjct: 73 LPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRID--- 129 Query: 465 SANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSAL-DTH 523 I + + LS GQKQ + I + +D +L+LDE + + D Sbjct: 130 --ELLATIGLGDERDRL-----AALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAE 182 Query: 524 TENLVRQALSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570 TE + L L + +V+ H + + E AD + + +G V G Sbjct: 183 TEK-TAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGS 229 >gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only, Transcription]. Length = 291 Score = 61.2 bits (148), Expect = 7e-10 Identities = 55/232 (23%), Positives = 96/232 (41%), Gaps = 18/232 (7%) Query: 348 VGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSS 407 V + F YK P+ NL +G LVG +G+GK+T++ +L + Sbjct: 9 VSDFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGG 68 Query: 408 GSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSAN 467 G +++ G + T +SY+G + +S TV + P+ + + Sbjct: 69 GVVQVLGRSAFHDTSLESSGDLSYLGGE---WSKTVGIAGEV--PLQGDISAEHMIFGVG 123 Query: 468 AHDFIMS--LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTE 525 D L D + +S GQ++R+ I +L+ +L+LDE T LD Sbjct: 124 GDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDV--- 180 Query: 526 NLVRQALSRLMQGRT-----TIVIAHRISTIIE--ADHIIFIEDGKVSESGD 570 L R L ++ TIV A I +E H+++I+ GK+ ++ Sbjct: 181 -LARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLK 231 >gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]. Length = 728 Score = 58.8 bits (142), Expect = 4e-09 Identities = 48/203 (23%), Positives = 85/203 (41%), Gaps = 26/203 (12%) Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424 G ++ + + G + GP+G GKS++ +L ++ +G + I Sbjct: 494 GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI-----------P 542 Query: 425 LRERISYVGQDVFLFSNTVRYNILIGRPMATEE---------EMIEIAKSANAHDFIMSL 475 I Y+ Q ++ T+R I+ P ++E+ ++ I + I+ Sbjct: 543 RPNNIFYIPQRPYMSGGTLRDQIIY--PDSSEQMKRKGYTDQDLEAILDIVHLE-HILQR 599 Query: 476 PQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRL 535 G+D V + LSGG+KQR+ +AR +LDE TSA+ E + QA Sbjct: 600 EGGWDA-VRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA 658 Query: 536 MQGRTTIVIAHRISTIIEADHII 558 G + + I HR S H++ Sbjct: 659 --GISLLSITHRPSLWKYHTHLL 679 >gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.. Length = 144 Score = 57.8 bits (140), Expect = 8e-09 Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 7/78 (8%) Query: 490 LSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHR-- 547 LSGG+K R+A+A+ +L + ++L+LDE T+ LD + + +AL T I+++H Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRY 128 Query: 548 -ISTIIEADHIIFIEDGK 564 + + A II +EDGK Sbjct: 129 FLDQV--ATKIIELEDGK 144 Score = 48.5 bits (116), Expect = 5e-06 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 12/80 (15%) Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414 ++ +Y G +L I+L G LVG +G+GKST++ L+ +P G + Sbjct: 3 LENLSKTYG-GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS 61 Query: 415 INIRDITFSSLRERISYVGQ 434 +I Y Q Sbjct: 62 -----------TVKIGYFEQ 70 >gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 330 Score = 57.7 bits (139), Expect = 8e-09 Identities = 56/240 (23%), Positives = 99/240 (41%), Gaps = 42/240 (17%) Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSL-- 425 + +++ G++ LVG SGSGKS I + + + + D + DI L Sbjct: 22 AVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK-DNWRVTADRMRFDDIDLLRLSP 80 Query: 426 RERISYVGQDVFLF----------SNTVRYNILIGRPMATEE---------------EMI 460 RER VG +V + S V ++ P T + E++ Sbjct: 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELL 140 Query: 461 EIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSAL 520 + D + S P L+ G+ Q++ IA A+ +L+ DE T+++ Sbjct: 141 HRVGIKDHKDIMRSYPY-----------ELTEGECQKVMIAIALANQPRLLIADEPTNSM 189 Query: 521 DTHTENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQ 577 + T+ + + LSRL Q T ++I+H + I + AD I + G+ ES + L+ Sbjct: 190 EPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTM 249 >gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]. Length = 935 Score = 55.6 bits (134), Expect = 4e-08 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 4/80 (5%) Query: 483 VGENGSNLSGGQKQRIAIARAMLRDGH---ILVLDEATSALDTHTENLVRQALSRLM-QG 538 +G+ + LSGG+ QR+ +A+ + + + +LDE T+ L + + L RL+ +G Sbjct: 816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKG 875 Query: 539 RTTIVIAHRISTIIEADHII 558 T IVI H + I AD II Sbjct: 876 NTVIVIEHNLDVIKTADWII 895 Score = 50.6 bits (121), Expect = 1e-06 Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 31/188 (16%) Query: 405 PSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMI--EI 462 P + +++I G NI +I+ S+ + + + ++ +E+ I I Sbjct: 411 PEALAVKIAGKNIAEISEMSIADALEF----------------FENLKLSEKEKKIAEPI 454 Query: 463 AKSANAH-DFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAM---LRDGHILVLDEATS 518 K F++ + GY T + + LSGG+ QRI +A + L G + VLDE + Sbjct: 455 LKEIKERLGFLVDVGLGYLT-LSRSAGTLSGGEAQRIRLATQIGSGL-TGVLYVLDEPSI 512 Query: 519 ALDTHTENLVRQALSRLM-QGRTTIVIAHRISTIIEADHIIFI------EDGKVSESGDQ 571 L + + L RL G T IV+ H TI ADHII I G++ G Sbjct: 513 GLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTP 572 Query: 572 KYLLQQKD 579 + LL + Sbjct: 573 EELLANPE 580 Score = 37.8 bits (88), Expect = 0.008 Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIIN 397 L I++ G T + G SGSGKST+IN Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKSTLIN 645 Score = 30.5 bits (69), Expect = 1.4 Identities = 11/27 (40%), Positives = 16/27 (59%) Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTI 395 L I+L K+ + G SGSGKS++ Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSL 42 >gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 258 Score = 53.4 bits (128), Expect = 2e-07 Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 20/207 (9%) Query: 379 GKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEID--GINIRDITFSSLRERISYVGQDV 436 G++ +VG SGSGK+T++ + P +G++ RD+ S ER + + Sbjct: 32 GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEW 91 Query: 437 -FLFSNT---VRYNILIG-----RPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENG 487 F+ N +R + G R MA + A A D++ + D + + Sbjct: 92 GFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIR-AEAQDWLEEVEIDLDR-IDDLP 149 Query: 488 SNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTE----NLVRQALSRLMQGRTTIV 543 SGG +QR+ IAR ++ ++ +DE T LD + +L+R + L G ++ Sbjct: 150 RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL--GLAVVI 207 Query: 544 IAHRISTI-IEADHIIFIEDGKVSESG 569 + H ++ + AD ++ ++ G+V ESG Sbjct: 208 VTHDLAVARLLADRLMVMKQGQVVESG 234 >gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 176 Score = 52.9 bits (127), Expect = 2e-07 Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 47/195 (24%) Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRER 428 L +++ + + G SGSGKST++N + ++S + R Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVN---------------------EGLYASGKAR 49 Query: 429 ISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGS 488 + P + ++I I + F++ + GY T +G+ S Sbjct: 50 LIS------------------FLPKFSRNKLIFIDQLQ----FLIDVGLGYLT-LGQKLS 86 Query: 489 NLSGGQKQRIAIARAMLRDGH--ILVLDEATSALDTHTENLVRQALSRLM-QGRTTIVIA 545 LSGG+ QR+ +A + + + +LDE ++ L N + + + L+ G T I+I Sbjct: 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIE 146 Query: 546 HRISTIIEADHIIFI 560 H + + AD II Sbjct: 147 HNLDVLSSADWIIDF 161 >gnl|CDD|73037 cd03278, ABC_SMC_barmotin, Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).. Length = 197 Score = 52.0 bits (125), Expect = 5e-07 Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 28/189 (14%) Query: 376 FKSGKMTALVGPSGSGKSTIIN-LLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQ 434 F G +TA+VGP+GSGKS II+ + + + S+ S+ + ++ D+ F+ R Sbjct: 20 FPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMS--DVIFAGSETRKPANFA 76 Query: 435 DVFL-FSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGG 493 +V L F N+ +I + +E I ++ +SL LSGG Sbjct: 77 EVTLTFDNSDGRYSIISQGDVSE-----IIEAPGKKVQRLSL--------------LSGG 117 Query: 494 QKQRIAI----ARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRIS 549 +K A+ A +R VLDE +ALD + L + IVI HR Sbjct: 118 EKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKG 177 Query: 550 TIIEADHII 558 T+ AD + Sbjct: 178 TMEAADRLY 186 >gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204 Score = 51.4 bits (123), Expect = 7e-07 Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 35/199 (17%) Query: 376 FKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQD 435 F S +T +VG +G+GK+TII L G + + E + V Sbjct: 20 FFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREG--EVRAQV--- 73 Query: 436 VFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQG-YDTYVGENGSNLSGGQ 494 + + G+ I +S + ++ QG + + + SGG+ Sbjct: 74 ------KLAFENANGKKY-------TITRSLAILENVIFCHQGESNWPLLDMRGRCSGGE 120 Query: 495 KQ------RIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTT------I 542 K R+A+A + IL LDE T+ LD E + ++L+ +++ R + I Sbjct: 121 KVLASLIIRLALAETFGSNCGILALDEPTTNLD---EENIEESLAEIIEERKSQKNFQLI 177 Query: 543 VIAHRISTIIEADHIIFIE 561 VI H + ADHI +E Sbjct: 178 VITHDEELVDAADHIYRVE 196 >gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 226 Score = 47.5 bits (113), Expect = 1e-05 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 4/92 (4%) Query: 470 DFIMSLPQGYDTYVGENGSNLSGGQKQRIAIAR--AMLRDGHILVLDEATSALDTHTENL 527 F++ + GY T + + LSGG+ QRI +A G + VLDE + L + Sbjct: 119 GFLVDVGLGYLT-LSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDR 177 Query: 528 VRQALSRLM-QGRTTIVIAHRISTIIEADHII 558 + + L RL G T +V+ H TI ADH+I Sbjct: 178 LIETLKRLRDLGNTVLVVEHDEDTIRAADHVI 209 >gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 177 Score = 46.9 bits (111), Expect = 2e-05 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 2/83 (2%) Query: 489 NLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--GRTTIVIAH 546 +LSGG+ QR+AIA A+LR+ + DE ++ LD +A+ RL + +T +V+ H Sbjct: 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130 Query: 547 RISTIIEADHIIFIEDGKVSESG 569 ++ + I + +G+ G Sbjct: 131 DLAVLDYLSDRIHVFEGEPGVYG 153 Score = 39.2 bits (91), Expect = 0.003 Identities = 15/42 (35%), Positives = 25/42 (59%) Query: 376 FKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINI 417 K G++ +VGP+G+GK+T + +L P+ + E DGI Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP 63 >gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA processing and modification]. Length = 592 Score = 46.4 bits (110), Expect = 2e-05 Identities = 48/200 (24%), Positives = 82/200 (41%), Gaps = 37/200 (18%) Query: 374 LCFKSGKMT-----ALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRER 428 LC K G+ + ++G +G+GK+T I +L P G EI +N+ Sbjct: 357 LCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG-EIPVLNV----------- 404 Query: 429 ISYVGQDVF-LFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMS---LPQGYDTYVG 484 SY Q + TVR I + A H ++ P + + Sbjct: 405 -SYKPQKISPKREGTVRQ---------LLHTKI---RDAYMHPQFVNDVMKPLQIENIID 451 Query: 485 ENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSR--LMQGRTTI 542 + LSGG+ QR+A+A + + + ++DE ++ LD+ + + + R L +T Sbjct: 452 QEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAF 511 Query: 543 VIAHR-ISTIIEADHIIFIE 561 V+ H I AD +I E Sbjct: 512 VVEHDFIMATYLADRVIVFE 531 Score = 39.9 bits (93), Expect = 0.002 Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 24/189 (12%) Query: 377 KSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITF---SSLRERISYVG 433 + G++ LVG +G GKST + +L P+ G + +T+ S L+ + + Sbjct: 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKIL 157 Query: 434 QDVFLFSNTVRYNILIGRPM-ATEEEMIEIAKSANAHDFI---MSLPQGYDTYVGENGSN 489 +D +Y I R + T +++ + + + + L D V + Sbjct: 158 EDNLKAIIKPQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQ---- 213 Query: 490 LSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL-------SRLMQGRTTI 542 LSGG+ QR AIA ++ + + DE +S LD V+Q L S + R I Sbjct: 214 LSGGELQRFAIAMVCVQKADVYMFDEPSSYLD------VKQRLKAAITIRSLINPDRYII 267 Query: 543 VIAHRISTI 551 V+ H +S + Sbjct: 268 VVEHDLSVL 276 >gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.. Length = 162 Score = 43.8 bits (103), Expect = 1e-04 Identities = 42/195 (21%), Positives = 63/195 (32%), Gaps = 69/195 (35%) Query: 376 FKSGKMTALVGPSGSGKSTIIN-----LLMRMYDPSSGSIEIDGINIRDITFSSLRERIS 430 F G +T + GP+GSGKSTI++ L S G + ++ Sbjct: 18 FGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSA-------- 69 Query: 431 YVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNL 490 + I + Q L Sbjct: 70 ---------------------------------------ELIFTRLQ------------L 78 Query: 491 SGGQKQRIAIARAM----LRDGHILVLDEATSALDT-HTENLVRQALSRLMQGRTTIVIA 545 SGG+K+ A+A + L+ + +LDE LD + L L L++G IVI Sbjct: 79 SGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVIT 138 Query: 546 HRISTIIEADHIIFI 560 H AD +I I Sbjct: 139 HLPELAELADKLIHI 153 >gnl|CDD|146027 pfam03193, DUF258, Protein of unknown function, DUF258. Length = 161 Score = 41.8 bits (99), Expect = 5e-04 Identities = 12/22 (54%), Positives = 15/22 (68%) Query: 378 SGKMTALVGPSGSGKSTIINLL 399 GK + L G SG GKST++N L Sbjct: 34 KGKTSVLAGQSGVGKSTLLNAL 55 >gnl|CDD|31389 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]. Length = 1163 Score = 40.4 bits (94), Expect = 0.001 Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 8/118 (6%) Query: 445 YNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAI---- 500 + L G A E E+ E A I + P G ++ S LSGG+K A+ Sbjct: 1026 FKELFGGGTA-ELELTEPDDPLTAGIEISARPPGKKL---QSLSLLSGGEKSLTALALLF 1081 Query: 501 ARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHII 558 A R VLDE +ALD V + + + + IVI HR T+ AD ++ Sbjct: 1082 AIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVITHRKGTMEAADRLV 1139 Score = 31.9 bits (72), Expect = 0.46 Identities = 11/16 (68%), Positives = 14/16 (87%) Query: 381 MTALVGPSGSGKSTII 396 TA+VGP+GSGKS I+ Sbjct: 26 FTAIVGPNGSGKSNIV 41 >gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.. Length = 213 Score = 40.2 bits (94), Expect = 0.002 Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 36/194 (18%) Query: 381 MTALVGPSGSGKSTIIN-LLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLF 439 + + GP+G+GKSTI++ + +Y + G + + E + V F F Sbjct: 30 LFLICGPTGAGKSTILDAITYALYGKTPR----YGRQENLRSVFAPGEDTAEV---SFTF 82 Query: 440 SNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQG-YDTYVGENGSNLSGGQKQRI 498 + + ++ I+ LPQG +D ++ S LSGG+ Sbjct: 83 QLGGKKYRVERSRGLDYDQFTR----------IVLLPQGEFDRFLARPVSTLSGGETFLA 132 Query: 499 AIARAM-------LRDG---HILVLDEATSALDTHTENLVRQALSRLMQ-GRTTIVIAH- 546 +++ A+ R G L +DE LD V AL + R VI+H Sbjct: 133 SLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHV 192 Query: 547 -----RISTIIEAD 555 RI +E Sbjct: 193 EELKERIPQRLEVI 206 >gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]. Length = 908 Score = 40.0 bits (93), Expect = 0.002 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 9/92 (9%) Query: 479 YDTYVGENGSNLSGGQKQ------RIAIARAMLRDGHI--LVLDEATSALDTHTENLVRQ 530 YD LSGG++ R+A++ + + L LDE LD + + Sbjct: 805 YDGGEVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAE 864 Query: 531 ALSRL-MQGRTTIVIAHRISTIIEADHIIFIE 561 L L GR I+I+H AD I ++ Sbjct: 865 ILEELLSDGRQIIIISHVEELKERADVRIRVK 896 Score = 30.0 bits (67), Expect = 2.1 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%) Query: 372 INLCFKSGKMTALVGPSGSGKSTIIN 397 I F SG + +VGP+G+GKS+I++ Sbjct: 19 IEKLFDSG-IFLIVGPNGAGKSSILD 43 >gnl|CDD|73180 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.. Length = 137 Score = 40.1 bits (94), Expect = 0.002 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 14/66 (21%) Query: 384 LVGPSGSGKSTIINLLMRMYDPSSG-SI----------EIDGINIRDITFSSLRERISYV 432 L GPSG GKST++ L+ +DP+ G S+ E+DG D F S E + Sbjct: 4 LSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDG---VDYHFVSKEEFERLI 60 Query: 433 GQDVFL 438 FL Sbjct: 61 ENGEFL 66 >gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.. Length = 287 Score = 39.8 bits (93), Expect = 0.002 Identities = 14/23 (60%), Positives = 17/23 (73%) Query: 378 SGKMTALVGPSGSGKSTIINLLM 400 GK + LVG SG GKST+IN L+ Sbjct: 160 KGKTSVLVGQSGVGKSTLINALL 182 >gnl|CDD|31356 COG1162, COG1162, Predicted GTPases [General function prediction only]. Length = 301 Score = 36.8 bits (85), Expect = 0.016 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%) Query: 358 VFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLL 399 +F S K G + L +GK+T L+G SG GKST+IN L Sbjct: 145 LFVSAKNGDGLEELAELL--AGKITVLLGQSGVGKSTLINAL 184 >gnl|CDD|145545 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 Score = 36.1 bits (83), Expect = 0.030 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 12/88 (13%) Query: 488 SNLSGGQKQRIAIA--RAMLR-DGH-ILVLDEATSALD-THTENLVR--QALSRLMQGRT 540 NLSGG+K +A+A A+ + +LDE +ALD + + + LS+ Q Sbjct: 1077 DNLSGGEKTLVALALIFAIQKYRPAPFYLLDEIDAALDDQNVSRVANYLKELSKNAQ--- 1133 Query: 541 TIVIAHRISTIIEADHI--IFIEDGKVS 566 IVI+ R + +AD + +++ + VS Sbjct: 1134 FIVISLREEMLEKADRLVGVYMVENGVS 1161 Score = 31.9 bits (72), Expect = 0.57 Identities = 12/19 (63%), Positives = 15/19 (78%) Query: 378 SGKMTALVGPSGSGKSTII 396 S TA+VGP+GSGKS I+ Sbjct: 22 SPGFTAIVGPNGSGKSNIL 40 >gnl|CDD|32858 COG3044, COG3044, Predicted ATPase of the ABC class [General function prediction only]. Length = 554 Score = 35.8 bits (82), Expect = 0.031 Identities = 39/165 (23%), Positives = 60/165 (36%), Gaps = 38/165 (23%) Query: 380 KMTALVGPSGSGKSTIINLLMR-MYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFL 438 +T + G + GK+T++ + R + + G DG RER+ Sbjct: 243 GITLITGGNFHGKTTLLTAIERGVDNHIPG----DG-----------RERV--------- 278 Query: 439 FSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRI 498 + + E E + FI LP G DT G + SG Sbjct: 279 --------VTDVKLAKAEAEEGRCVSGLDLSLFINHLPGGKDTPDFVTG-DASGSTSMAA 329 Query: 499 AIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIV 543 I A+ L++DE TSA T LVR L++ +G T+ Sbjct: 330 WIQEAIEAGAKTLLIDEDTSA----TNLLVRDVLAKESEGERTLT 370 >gnl|CDD|30543 COG0194, Gmk, Guanylate kinase [Nucleotide transport and metabolism]. Length = 191 Score = 35.5 bits (82), Expect = 0.042 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 16/71 (22%) Query: 379 GKMTALVGPSGSGKSTIINLLMRMYD-----------PSSGSIEIDGINIRDITFSSLRE 427 G + L GPSG GKST++ L+ P G E+DG+ D F + E Sbjct: 4 GLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPG--EVDGV---DYFFVTEEE 58 Query: 428 RISYVGQDVFL 438 + +D FL Sbjct: 59 FEELIERDEFL 69 >gnl|CDD|143797 pfam00004, AAA, ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131 Score = 34.9 bits (81), Expect = 0.066 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 25/119 (21%) Query: 462 IAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEA---TS 518 +AK A +S + YVGE+ L ++ A+ + ++ +DE Sbjct: 18 VAKELGAPFIEISGSELVSKYVGESEKRL----RELFEAAKKLAP--CVIFIDEIDALAG 71 Query: 519 ALDTHTENLVRQALS---RLMQGRT-----TIVIA--HRISTIIEA------DHIIFIE 561 + + ++ R+ ++ + G T IVIA +R + A D II Sbjct: 72 SRGSGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLDPALLRGRFDRIIEFP 130 >gnl|CDD|36151 KOG0933, KOG0933, KOG0933, Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics, Cell cycle control, cell division, chromosome partitioning]. Length = 1174 Score = 34.5 bits (79), Expect = 0.073 Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 5/48 (10%) Query: 485 ENGSNLSGGQKQRIAIA--RAML--RDGHILVLDEATSALD-THTENL 527 E+ S LSGGQ+ +A++ AML + + +LDE +ALD +HT+N+ Sbjct: 1078 ESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNI 1125 >gnl|CDD|34791 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]. Length = 1077 Score = 34.8 bits (79), Expect = 0.074 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%) Query: 381 MTALVGPSGSGKSTIINLLMRMY-----DPSSGSIEIDGINIRDITFSSLRERIS 430 + A+VGP G+GKST+I L+R + D G I + R ITF + Sbjct: 71 IVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSDLH 125 >gnl|CDD|33254 COG3451, VirB4, Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]. Length = 796 Score = 34.2 bits (78), Expect = 0.12 Identities = 7/23 (30%), Positives = 16/23 (69%) Query: 380 KMTALVGPSGSGKSTIINLLMRM 402 T ++GP+G+GK+ +++ L+ Sbjct: 437 GHTLIIGPTGAGKTVLLSFLLAQ 459 >gnl|CDD|110578 pfam01583, APS_kinase, Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif. Length = 157 Score = 33.8 bits (78), Expect = 0.15 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 6/46 (13%) Query: 384 LVGPSGSGKSTIINLLMRMYDPSSGSIEI-DGINIR-----DITFS 423 G SGSGKSTI N L R S+ + DG N+R D+ FS Sbjct: 7 FTGLSGSGKSTIANALERKLFAQGISVYVLDGDNVRHGLNKDLGFS 52 >gnl|CDD|73032 cd03273, ABC_SMC2_euk, Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).. Length = 251 Score = 33.7 bits (77), Expect = 0.16 Identities = 58/220 (26%), Positives = 94/220 (42%), Gaps = 68/220 (30%) Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI- 415 D F SY V+SG + F A+ G +GSGKS I++ + + GI Sbjct: 9 DGFKSY-ATRTVISGFDPQF-----NAITGLNGSGKSNILDAICFVL----------GIT 52 Query: 416 NIRDITFSSLRERISYVGQD-------VFLFSN----------------TVRYNILIGRP 452 N+ + S+L++ I GQ +F N TV I++G Sbjct: 53 NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGT 112 Query: 453 --------MATEEEMIEIAKSA-----NAHDFIMSLPQGYDTYV-------GENGSNLSG 492 A ++ + ++ +S N H IM QG T V E+ + LSG Sbjct: 113 NKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIM---QGRITKVLNMGGVWKESLTELSG 169 Query: 493 GQKQRIAIA--RAML--RDGHILVLDEATSALD-THTENL 527 GQ+ +A++ A+L + + +LDE +ALD +HT+N+ Sbjct: 170 GQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNI 209 >gnl|CDD|37584 KOG2373, KOG2373, KOG2373, Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]. Length = 514 Score = 32.3 bits (73), Expect = 0.37 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%) Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTII-----NLLMRMYDPSSGSIEI 412 PVL+ + G++T L GP+GSGK+T + +L + + GS EI Sbjct: 261 PVLNKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEI 311 >gnl|CDD|33963 COG4240, COG4240, Predicted kinase [General function prediction only]. Length = 300 Score = 32.3 bits (73), Expect = 0.40 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%) Query: 386 GPSGSGKST----IINLLMRMYDPSSGSIEID 413 GP GSGKST I+ LL + ++ +D Sbjct: 57 GPQGSGKSTLSALIVRLLAAKGLERTATLSLD 88 >gnl|CDD|36214 KOG0996, KOG0996, KOG0996, Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics, Cell cycle control, cell division, chromosome partitioning]. Length = 1293 Score = 32.2 bits (73), Expect = 0.46 Identities = 11/21 (52%), Positives = 17/21 (80%) Query: 380 KMTALVGPSGSGKSTIINLLM 400 TA+VGP+GSGKS +I+ ++ Sbjct: 109 SFTAIVGPNGSGKSNVIDSML 129 >gnl|CDD|146340 pfam03647, Tmemb_14, Transmembrane proteins 14C. This family of short membrane proteins are as yet uncharacterized. Length = 96 Score = 32.2 bits (74), Expect = 0.48 Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 266 ISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRIILEGGMV 322 I+GL ++ + +L+ + G ++ + + ++A R +TR + G+V Sbjct: 29 IAGLIFGALLGYGAYLLLQN--QPYGLELALLASAVLAGVMGPRYIKTRKFMPAGLV 83 >gnl|CDD|30875 COG0529, CysC, Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]. Length = 197 Score = 32.1 bits (73), Expect = 0.48 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Query: 384 LVGPSGSGKSTIINLLMR-MYDPSSGSIEIDGINIRDITFSSL 425 G SGSGKSTI N L ++ +DG N+R L Sbjct: 28 FTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDL 70 >gnl|CDD|144489 pfam00910, RNA_helicase, RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses. Length = 105 Score = 31.8 bits (73), Expect = 0.52 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 7/58 (12%) Query: 384 LVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIR--DITFSSLRERISYVGQDVFLF 439 L GP G GKST+ L R G + D + R D F Y GQ V + Sbjct: 3 LYGPPGCGKSTLAKYLARALLDHLGLPKKDSVYSRNPDDDFWD-----GYTGQPVVII 55 >gnl|CDD|37913 KOG2702, KOG2702, KOG2702, Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism, Coenzyme transport and metabolism]. Length = 323 Score = 32.0 bits (72), Expect = 0.52 Identities = 12/38 (31%), Positives = 19/38 (50%) Query: 380 KMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINI 417 ++T L G G+GKST I + + + + INI Sbjct: 120 ELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINI 157 >gnl|CDD|30200 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.. Length = 149 Score = 32.0 bits (73), Expect = 0.53 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 6/46 (13%) Query: 384 LVGPSGSGKSTIINLLMR-MYDPSSGSIEIDGINIR-----DITFS 423 L G SGSGKSTI L ++ +DG N+R D+ FS Sbjct: 4 LTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFS 49 >gnl|CDD|36405 KOG1191, KOG1191, KOG1191, Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]. Length = 531 Score = 31.9 bits (72), Expect = 0.57 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 12/63 (19%) Query: 377 KSGKMTALVGPSGSGKSTIINLLMR----MYDPSSGS--------IEIDGINIRDITFSS 424 +SG A+VG GKS+++N L R + P G+ + ++G+ +R + Sbjct: 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAG 325 Query: 425 LRE 427 +RE Sbjct: 326 IRE 328 >gnl|CDD|33504 COG3709, COG3709, Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]. Length = 192 Score = 31.4 bits (71), Expect = 0.63 Identities = 10/18 (55%), Positives = 16/18 (88%) Query: 379 GKMTALVGPSGSGKSTII 396 G++ A+VGPSG+GK T++ Sbjct: 5 GRLIAVVGPSGAGKDTLL 22 >gnl|CDD|30003 cd01393, recA_like, RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.. Length = 226 Score = 31.3 bits (71), Expect = 0.78 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 16/97 (16%) Query: 378 SGKMTALVGPSGSGKSTI-------INLLMRMYDPSSGSIEIDGINIRDITFSSLR-ERI 429 +G++T + G GSGK+ + L + + ID T + R ER+ Sbjct: 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID-------TEGAFRPERL 70 Query: 430 SYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSA 466 + L V NI + RP E+ +EI + Sbjct: 71 VQLAVRFGLDPEEVLDNIYVARPY-NGEQQLEIVEEL 106 >gnl|CDD|133259 cd01850, CDC_Septin, CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. Length = 276 Score = 31.3 bits (72), Expect = 0.78 Identities = 11/16 (68%), Positives = 12/16 (75%) Query: 384 LVGPSGSGKSTIINLL 399 +VG SG GKST IN L Sbjct: 9 VVGESGLGKSTFINTL 24 >gnl|CDD|73034 cd03275, ABC_SMC1_euk, Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).. Length = 247 Score = 31.3 bits (71), Expect = 0.82 Identities = 52/232 (22%), Positives = 88/232 (37%), Gaps = 43/232 (18%) Query: 359 FFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIE------- 411 F SYK H + + T ++GP+GSGKS +++ + + S + Sbjct: 9 FKSYKGRHVIGPF-------DRFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDL 61 Query: 412 IDGINIRDITFSSLRERISYVGQD----VFLFSNT-VRYNILIGRPMATEEEMIEIAKSA 466 I + +S Y D F T + I + + +E E + Sbjct: 62 IYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKI 121 Query: 467 N----AHDFIMSLPQG-YDTYVGENG--------SNLSGGQKQRIAIARAMLRDGH---- 509 N A +F++ QG ++ +N NLSGG+K A+ A+L H Sbjct: 122 NILVKARNFLVF--QGDVESIASKNPPGKRFRDMDNLSGGEKTMAAL--ALLFAIHSYQP 177 Query: 510 --ILVLDEATSALD-THTENLVRQALSRLMQGRTTIVIAHRISTIIEADHII 558 VLDE +ALD T+ + + IVI+ + +AD ++ Sbjct: 178 APFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALV 229 >gnl|CDD|35854 KOG0635, KOG0635, KOG0635, Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]. Length = 207 Score = 31.1 bits (70), Expect = 0.85 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 8/67 (11%) Query: 384 LVGPSGSGKSTIINLLMRM-YDPSSGSIEIDGINIR-----DITFSS--LRERISYVGQD 435 + G SGSGKST+ L + + +DG N+R D+ F + E I +G+ Sbjct: 36 ITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNENIRRIGEV 95 Query: 436 VFLFSNT 442 LF++ Sbjct: 96 AKLFADA 102 >gnl|CDD|147760 pfam05783, DLIC, Dynein light intermediate chain (DLIC). This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo. Length = 490 Score = 31.0 bits (70), Expect = 0.99 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Query: 378 SGKMTALVGPSGSGKSTIINLLMRMYDPSSGS-IEIDGINIRD 419 SGK ++G GSGK+T+I L + P G +E +N+ D Sbjct: 44 SGKNVLVLGEDGSGKTTLIAKLQGVEHPKKGRGLEYLYLNVHD 86 >gnl|CDD|73033 cd03274, ABC_SMC4_euk, Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).. Length = 212 Score = 31.0 bits (70), Expect = 1.1 Identities = 45/201 (22%), Positives = 86/201 (42%), Gaps = 44/201 (21%) Query: 380 KMTALVGPSGSGKSTIINLLMRMY----------------DPSSGSIEIDGINIRDITFS 423 +A+VGP+GSGKS +I+ ++ ++ S+G +D ++ ++ F Sbjct: 26 SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCSV-EVHFQ 84 Query: 424 SLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYV 483 + ++ + + L N R+ IL G E++ ++ K + Sbjct: 85 EIIDKPLLKSKGIDLDHN--RFLILQGEV----EQIAQMPKKS----------------- 121 Query: 484 GENGSNLSGGQKQ----RIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGR 539 +N SNLSGG+K + A + + V+DE +ALD ++V + + Sbjct: 122 WKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNA 181 Query: 540 TTIVIAHRISTIIEADHIIFI 560 IVI+ R + AD ++ I Sbjct: 182 QFIVISLRNNMFELADRLVGI 202 >gnl|CDD|30833 COG0486, ThdF, Predicted GTPase [General function prediction only]. Length = 454 Score = 30.5 bits (69), Expect = 1.4 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 12/63 (19%) Query: 377 KSGKMTALVGPSGSGKSTIINLLMR------------MYDPSSGSIEIDGINIRDITFSS 424 + G ++G GKS+++N L+ D I ++GI +R + + Sbjct: 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAG 274 Query: 425 LRE 427 +RE Sbjct: 275 IRE 277 >gnl|CDD|36180 KOG0962, KOG0962, KOG0962, DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]. Length = 1294 Score = 30.3 bits (68), Expect = 1.6 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 12/68 (17%) Query: 491 SGGQKQ------RIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTT--- 541 S GQK R+A+A + +L LDE T+ LD + +ALSR+++ R Sbjct: 1185 SAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRN 1244 Query: 542 ---IVIAH 546 IVI H Sbjct: 1245 FQLIVITH 1252 Score = 28.7 bits (64), Expect = 4.9 Identities = 10/19 (52%), Positives = 15/19 (78%) Query: 381 MTALVGPSGSGKSTIINLL 399 +T +VG +G+GK+TII L Sbjct: 29 LTLIVGANGTGKTTIIECL 47 >gnl|CDD|73296 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.. Length = 147 Score = 30.1 bits (68), Expect = 1.6 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%) Query: 383 ALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERIS 430 A+ GP+GSGKST+ LL + G +D IR L ++ Sbjct: 3 AIDGPAGSGKSTVAKLLAKKL----GLPYLDTGGIRTEEVGKLASEVA 46 >gnl|CDD|35926 KOG0707, KOG0707, KOG0707, Guanylate kinase [Nucleotide transport and metabolism]. Length = 231 Score = 29.9 bits (67), Expect = 2.1 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 14/66 (21%) Query: 384 LVGPSGSGKSTIINLLMRMYD-----------PSSGSIEIDGINIRDITFSSLRERISYV 432 L GPSG GKST++ L + + E+ G FS+ E +S + Sbjct: 42 LSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGK---HYHFSTTEEFLSMI 98 Query: 433 GQDVFL 438 + F+ Sbjct: 99 KNNEFI 104 >gnl|CDD|30988 COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]. Length = 716 Score = 29.9 bits (67), Expect = 2.2 Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 4/58 (6%) Query: 194 VKRVRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNK 251 + VR +++ + + + +LQ+ V+ IR+V E+V + R M++++ +L K Sbjct: 359 LDEVREELDEALRQLSRLTTDLQDEVMKIRMV---PFEQVFS-RFPRMVRDLARKLGK 412 >gnl|CDD|34546 COG4938, COG4938, Uncharacterized conserved protein [Function unknown]. Length = 374 Score = 29.6 bits (66), Expect = 2.4 Identities = 15/57 (26%), Positives = 25/57 (43%) Query: 372 INLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRER 428 IN +T +GP+ SGKST I L +Y + S + + + + + E Sbjct: 14 INGKIILKPLTVFIGPNSSGKSTTIQSLYLIYSGLTRSYALPRLACAEYSRNKKWEE 70 >gnl|CDD|133282 cd01882, BMS1, Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. Length = 225 Score = 29.6 bits (67), Expect = 2.6 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 14/55 (25%) Query: 383 ALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT-----FSSLRERISYV 432 A+VGP G GK+T+I L++ Y NI DI + + R++++ Sbjct: 43 AVVGPPGVGKTTLIKSLVKNY---------TKQNISDIKGPITVVTGKKRRLTFI 88 >gnl|CDD|133258 cd00882, Ras_like_GTPase, Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 157 Score = 29.4 bits (66), Expect = 2.6 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 6/68 (8%) Query: 384 LVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYV-----GQDVFL 438 +VG SG GK++++N L+ E I+ T +++ GQ+ F Sbjct: 1 VVGDSGVGKTSLLNRLLGGE-FVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFR 59 Query: 439 FSNTVRYN 446 + Y Sbjct: 60 SLRRLYYR 67 >gnl|CDD|144365 pfam00735, Septin, Septin. Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerize to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis. Length = 280 Score = 29.6 bits (67), Expect = 2.7 Identities = 10/16 (62%), Positives = 13/16 (81%) Query: 384 LVGPSGSGKSTIINLL 399 +VG SG GK+T+IN L Sbjct: 9 VVGESGLGKTTLINTL 24 >gnl|CDD|133256 cd00880, Era_like, Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 163 Score = 29.6 bits (67), Expect = 2.8 Identities = 7/18 (38%), Positives = 13/18 (72%) Query: 384 LVGPSGSGKSTIINLLMR 401 L G + +GKS+++N L+ Sbjct: 1 LFGRTNAGKSSLLNALLG 18 >gnl|CDD|38801 KOG3595, KOG3595, KOG3595, Dyneins, heavy chain [Cytoskeleton]. Length = 1395 Score = 29.5 bits (66), Expect = 2.9 Identities = 11/39 (28%), Positives = 19/39 (48%) Query: 372 INLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSI 410 + L GK LVGP+G+GK+ ++ +R + Sbjct: 120 LKLLLAHGKPVLLVGPTGTGKTVLVLSELRSLQDREVYL 158 >gnl|CDD|73000 cd03241, ABC_RecN, RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 276 Score = 29.4 bits (66), Expect = 2.9 Identities = 45/233 (19%), Positives = 78/233 (33%), Gaps = 44/233 (18%) Query: 372 INLCFKSGKMTALVGPSGSGKSTIIN-LLMRMYDPSSGSI-----------EIDGINIRD 419 + L F+ G +T L G +G+GKS +++ L + + +S + + I+ + Sbjct: 15 LELDFEEG-LTVLTGETGAGKSILLDALSLLLGGRASADLIRSGAEKAVVEGVFDISDEE 73 Query: 420 ITFSSLRERISYVGQDVFL---FSNTVRYNILIGRPMATEEEMIEIAKS----------- 465 + L E D+ + S R I T + + E+ Sbjct: 74 EAKALLLELGIEDDDDLIIRREISRKGRSRYFINGQSVTLKLLRELGSLLVDIHGQHDHQ 133 Query: 466 --ANAHDFIMSLPQGYD-------TYVGENG----SNLSGGQKQRIAIA----RAMLRDG 508 N + L G D T GE SGG+ R+ +A A Sbjct: 134 NLLNPERQLDLLDGGLDDVEFLFSTNPGEPLKPLAKIASGGELSRLMLALKAILARKDAV 193 Query: 509 HILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIE 561 L+ DE + + V + L L + + I H AD+ +E Sbjct: 194 PTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVE 246 >gnl|CDD|31412 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]. Length = 408 Score = 29.4 bits (66), Expect = 3.0 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 13/54 (24%) Query: 384 LVGPSGSGKSTIINLLMRMYD-PSSGSIEIDGINIRDITFSSLRERISYVGQDV 436 L+GP+GSGK+ + L ++ + P I D T +L E YVG+DV Sbjct: 102 LIGPTGSGKTLLAQTLAKILNVP---------FAIADAT--TLTE-AGYVGEDV 143 >gnl|CDD|133305 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 203 Score = 29.2 bits (66), Expect = 3.1 Identities = 8/16 (50%), Positives = 11/16 (68%) Query: 384 LVGPSGSGKSTIINLL 399 L+GPS SGK+ + L Sbjct: 5 LLGPSDSGKTALFTKL 20 >gnl|CDD|31388 COG1195, RecF, Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]. Length = 363 Score = 29.0 bits (65), Expect = 3.6 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 18/92 (19%) Query: 490 LSGGQKQRIAIA---------RAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGR- 539 S GQ++ +A+A R + IL+LD+ S LD R AL ++ Sbjct: 276 ASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGR----RAALLDTIELGV 331 Query: 540 ----TTIVIAHRISTIIEADHIIFIEDGKVSE 567 TT + + E + +EDGK+++ Sbjct: 332 QVFVTTTDLEDIDDNLDENAQMFHVEDGKITK 363 >gnl|CDD|143853 pfam00071, Ras, Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 Score = 29.0 bits (66), Expect = 3.6 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 20/74 (27%) Query: 384 LVGPSGSGKSTIINLLMR-----MYDPSSG------SIEIDGINIR-DIT-------FSS 424 LVG G GKS+++ + Y P+ G +IE+DG ++ I F + Sbjct: 4 LVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRA 63 Query: 425 LRERISYVGQDVFL 438 LR + Y G FL Sbjct: 64 LR-PLYYRGAQGFL 76 >gnl|CDD|33492 COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism]. Length = 1027 Score = 29.0 bits (65), Expect = 3.8 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Query: 151 ITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKRVR---HIMEQGMVA 207 ++ L + LV +++ +FL +L II PL +L I++ ++M G +A Sbjct: 336 VSKTLIEGSVLVIIVLALFLGNFRSALIVIISLPLSLLIAFIVMNFFGISANLMSLGGLA 395 Query: 208 IG 209 I Sbjct: 396 IA 397 >gnl|CDD|58644 cd00003, PNPsynthase, Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed, solvent-shielded active site.. Length = 234 Score = 28.9 bits (65), Expect = 4.0 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 8/81 (9%) Query: 434 QDVFLFSNTVR--YNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLS 491 +DV L VR N+ MA EEM+EIA H + +P+ + E G ++ Sbjct: 52 RDVRLLRELVRTELNL----EMAPTEEMLEIALEVKPHQVTL-VPEKREELTTEGGLDV- 105 Query: 492 GGQKQRIAIARAMLRDGHILV 512 GQ +++ L+D I V Sbjct: 106 AGQAEKLKPIIERLKDAGIRV 126 >gnl|CDD|145617 pfam02572, CobA_CobO_BtuR, ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin adenosyltransferase, EC:2.5.1.17, involved in cobalamin (vitamin B12) biosynthesis. These enzymes catalyse the adenosylation reaction: ATP + cob(I)alamin + H2O <=> phosphate + diphosphate + adenosylcobalamin. Length = 172 Score = 28.9 bits (66), Expect = 4.1 Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%) Query: 499 AIARAMLRDG--HILVLDEATSALD 521 A+ L G ++VLDE AL Sbjct: 86 EKAKEALASGSYDLVVLDELNYALK 110 >gnl|CDD|31889 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]. Length = 323 Score = 28.7 bits (64), Expect = 4.1 Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 38/100 (38%) Query: 384 LVGPSGSGKSTIINLLMRMY------------DPSS----GSIEIDGINIRDITFSSLRE 427 + G G+GKST+I L R DPSS GSI D I ++ + Sbjct: 56 ITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRL------- 108 Query: 428 RISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSAN 467 V + I R + + ++++ Sbjct: 109 --------------AVDPGVFI-RSSPSRGTLGGLSRATR 133 >gnl|CDD|33185 COG3378, COG3378, Predicted ATPase [General function prediction only]. Length = 517 Score = 28.8 bits (64), Expect = 4.1 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%) Query: 380 KMTALVGPSGSGKSTIINLLMR---MYDPSSGSIEI 412 K+ L GP G+GKST ++L+ Y+ +S + Sbjct: 231 KLFWLYGPGGNGKSTFVDLISNLLGRYNVTSAPLTD 266 >gnl|CDD|133370 cd04170, EF-G_bact, Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains only bacterial members. Length = 268 Score = 28.7 bits (65), Expect = 4.3 Identities = 10/12 (83%), Positives = 11/12 (91%) Query: 383 ALVGPSGSGKST 394 ALVG SGSGK+T Sbjct: 3 ALVGHSGSGKTT 14 >gnl|CDD|144280 pfam00625, Guanylate_kin, Guanylate kinase. Length = 182 Score = 28.9 bits (65), Expect = 4.3 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 14/66 (21%) Query: 384 LVGPSGSGKSTIINLLMRMYDPSSGSI-----------EIDGINIRDITFSSLRERISYV 432 L GPSG GKS I L+ Y G E+DG +D F S E + + Sbjct: 6 LSGPSGVGKSHIKKALLDEYPEKFGYSVSHTTRPPRPGEVDG---KDYHFVSKEEMENDI 62 Query: 433 GQDVFL 438 + FL Sbjct: 63 SANEFL 68 >gnl|CDD|133278 cd01876, YihA_EngB, The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170 Score = 28.6 bits (65), Expect = 4.5 Identities = 9/19 (47%), Positives = 11/19 (57%) Query: 383 ALVGPSGSGKSTIINLLMR 401 A G S GKS++IN L Sbjct: 3 AFAGRSNVGKSSLINALTN 21 >gnl|CDD|30474 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and metabolism]. Length = 208 Score = 28.7 bits (64), Expect = 4.6 Identities = 8/26 (30%), Positives = 12/26 (46%) Query: 379 GKMTALVGPSGSGKSTIINLLMRMYD 404 G + G G+GK+T LL + Sbjct: 3 GMFIVIEGIDGAGKTTQAELLKERLE 28 >gnl|CDD|37246 KOG2035, KOG2035, KOG2035, Replication factor C, subunit RFC3 [Energy production and conversion, Replication, recombination and repair]. Length = 351 Score = 28.7 bits (64), Expect = 4.8 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%) Query: 386 GPSGSGKSTIINLLMR-MYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFL 438 GPSG+GK T I L+R +Y ++I+ T S + IS V + L Sbjct: 41 GPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFT--TPSKKKLEISTVSSNYHL 92 >gnl|CDD|29988 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.. Length = 271 Score = 28.7 bits (64), Expect = 4.8 Identities = 9/30 (30%), Positives = 17/30 (56%) Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTII 396 PVL+ + + G++ L +G GK+T + Sbjct: 18 PVLNKLTKGLRKGELIILTAGTGVGKTTFL 47 >gnl|CDD|36760 KOG1547, KOG1547, KOG1547, Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms, Cytoskeleton]. Length = 336 Score = 28.8 bits (64), Expect = 5.1 Identities = 15/38 (39%), Positives = 20/38 (52%) Query: 384 LVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT 421 +VG SG GKST+IN L + + S S + I T Sbjct: 51 VVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTT 88 >gnl|CDD|57926 cd01855, YqeH, YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.. Length = 190 Score = 28.3 bits (63), Expect = 5.5 Identities = 12/36 (33%), Positives = 20/36 (55%) Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMY 403 +++ I K G +VG + GKST+IN L++ Sbjct: 116 LINAIKKLAKKGGDVYVVGATNVGKSTLINALLKKD 151 >gnl|CDD|37866 KOG2655, KOG2655, KOG2655, Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning, Nuclear structure, Intracellular trafficking, secretion, and vesicular transport]. Length = 366 Score = 28.4 bits (63), Expect = 5.5 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 384 LVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTV 443 +VG SG GKST IN L SG+ E+ G + R + + ++ + TV Sbjct: 26 VVGESGLGKSTFINSLFL--TDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTV 83 Query: 444 R 444 Sbjct: 84 I 84 >gnl|CDD|30975 COG0630, VirB11, Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]. Length = 312 Score = 28.4 bits (63), Expect = 5.9 Identities = 11/48 (22%), Positives = 22/48 (45%) Query: 374 LCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT 421 L ++ K + G + SGK+T++N L+ P + I+ + Sbjct: 138 LAIEARKSIIICGGTASGKTTLLNALLDFIPPEERIVTIEDTPELKLP 185 >gnl|CDD|146036 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop. Length = 122 Score = 28.5 bits (64), Expect = 6.0 Identities = 9/20 (45%), Positives = 13/20 (65%) Query: 383 ALVGPSGSGKSTIINLLMRM 402 +VGP SGK+T+I L+ Sbjct: 4 LVVGPKDSGKTTLIRKLLNY 23 >gnl|CDD|34624 COG5019, CDC3, Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]. Length = 373 Score = 28.3 bits (63), Expect = 6.2 Identities = 10/16 (62%), Positives = 12/16 (75%) Query: 384 LVGPSGSGKSTIINLL 399 +VG SG GK+T IN L Sbjct: 28 VVGESGLGKTTFINTL 43 >gnl|CDD|133359 cd04159, Arl10_like, Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 Score = 28.0 bits (63), Expect = 6.6 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 11/46 (23%) Query: 381 MTALVGPSGSGKSTIINLLMRMYDPSSGSIEID-----GINIRDIT 421 LVG SGK+T++N++ + G D G N+R +T Sbjct: 1 EITLVGLQNSGKTTLVNVI------AGGQFSEDTIPTVGFNMRKVT 40 >gnl|CDD|37536 KOG2325, KOG2325, KOG2325, Predicted transporter/transmembrane protein [General function prediction only]. Length = 488 Score = 28.4 bits (63), Expect = 6.7 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 6/74 (8%) Query: 255 IESATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTR 314 IE+ +S + + G + + +L++G +S G I+S I LL + +I + R Sbjct: 281 IETLSSALTMVMYGWTGSEAVLYNGITLSISG------ILSVILLLLYIFTRLGKIDKRR 334 Query: 315 IILEGGMVGVRCMF 328 IIL G ++ + Sbjct: 335 IILLGFLIFFLSYY 348 >gnl|CDD|30843 COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]. Length = 557 Score = 28.3 bits (63), Expect = 6.9 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Query: 372 INLCFKSGKMTALVGPSGSGKSTIINLL 399 + L F+ G +T L G +G+GKS II+ L Sbjct: 16 LELEFEKG-LTVLTGETGAGKSIIIDAL 42 >gnl|CDD|36197 KOG0979, KOG0979, KOG0979, Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics, Cell cycle control, cell division, chromosome partitioning, Replication, recombination and repair]. Length = 1072 Score = 28.0 bits (62), Expect = 6.9 Identities = 8/23 (34%), Positives = 14/23 (60%) Query: 375 CFKSGKMTALVGPSGSGKSTIIN 397 + ++GP+GSGKS+I+ Sbjct: 38 FLPGPSLNMIIGPNGSGKSSIVC 60 >gnl|CDD|145059 pfam01706, FliG_C, FliG C-terminal domain. FliG is a component of the flageller rotor, present in about 25 copies per flagellum. This domain functions specifically in motor rotation. Length = 110 Score = 27.9 bits (63), Expect = 8.8 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Query: 234 MNQRMCNMIKEVEDRLNKV--AKIESATSPIMETISGLSIAGII 275 M++R M++E + L V + +E+A I+ + L+ G I Sbjct: 64 MSKRAAEMLREELEALGPVRLSDVEAAQKEIVAIVRELAEEGEI 107 >gnl|CDD|31353 COG1159, Era, GTPase [General function prediction only]. Length = 298 Score = 27.8 bits (62), Expect = 9.0 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%) Query: 376 FKSGKMTALVGPSGSGKSTIINLLM 400 FKSG A++G GKST++N L+ Sbjct: 4 FKSG-FVAIIGRPNVGKSTLLNALV 27 >gnl|CDD|37181 KOG1970, KOG1970, KOG1970, Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Energy production and conversion, Replication, recombination and repair]. Length = 634 Score = 27.7 bits (61), Expect = 9.1 Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 379 GKMTALVGPSGSGKSTIINLL 399 ++ L GPSG GKST + +L Sbjct: 110 SRILLLTGPSGCGKSTTVKVL 130 >gnl|CDD|133363 cd04163, Era, Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168 Score = 27.8 bits (63), Expect = 9.6 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%) Query: 376 FKSGKMTALVGPSGSGKSTIINLLM 400 FKSG A+VG GKST++N L+ Sbjct: 1 FKSG-FVAIVGRPNVGKSTLLNALV 24 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.324 0.137 0.384 Gapped Lambda K H 0.267 0.0626 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 6,956,150 Number of extensions: 382031 Number of successful extensions: 2298 Number of sequences better than 10.0: 1 Number of HSP's gapped: 2071 Number of HSP's successfully gapped: 336 Length of query: 596 Length of database: 6,263,737 Length adjustment: 99 Effective length of query: 497 Effective length of database: 4,124,446 Effective search space: 2049849662 Effective search space used: 2049849662 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 60 (27.1 bits)