RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide
binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62]
(596 letters)
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes.
Length = 571
Score = 414 bits (1066), Expect = e-116
Identities = 202/560 (36%), Positives = 323/560 (57%), Gaps = 9/560 (1%)
Query: 37 MSIVAMITVSLMTSCSAWIMRDVMNAMVASTDIFHVIVVSSTVAGIFIVKGIASFVQNYY 96
++ VAMI V+ S A +++ +++ D + V V G+ +++GI SFV Y
Sbjct: 18 LAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYL 77
Query: 97 LSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTH-ATQSVRSVVDIFITSFL 155
LS N ++ + + +++ +LL + F+D + L R T + Q + D FI +
Sbjct: 78 LSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIV-LV 136
Query: 156 RDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKRVRHIMEQGMVAIGHIIQNL 215
R+ LT++GL +V+ L+L +++ P+ + +R + KR+R I ++ ++G +
Sbjct: 137 RETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVA 196
Query: 216 QETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIESATSPIMETISGLSIAGII 275
+ET+ G R+VK F + +R + K+ S +SPI + I+ L++A ++
Sbjct: 197 EETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVL 256
Query: 276 LFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPI 335
+ F ++ G+ AG+ +FITA++ P K + ++ G+ +F+LLD P
Sbjct: 257 FIALFQ-AQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPP 315
Query: 336 MIEESPHAVNLPVGKGTTVFRDVFFSYK-QGHPVLSGINLCFKSGKMTALVGPSGSGKST 394
E+ + +G FR+V F Y + P L I+L + G+ ALVG SGSGKST
Sbjct: 316 --EKDTGTRAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKST 373
Query: 395 IINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPM- 453
++NL+ R Y+P SG I +DG ++ D T +SLR +++ V QDV LF++T+ NI GR
Sbjct: 374 LVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQ 433
Query: 454 ATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVL 513
A E+ +A A DF+ LP G DT +GENG LSGGQ+QR+AIARA+L+D IL+L
Sbjct: 434 ADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILIL 493
Query: 514 DEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKY 573
DEATSALD +E LV+ AL RLMQGRTT+VIAHR+STI +AD I+ ++DG++ E G
Sbjct: 494 DEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNE 553
Query: 574 LLQQKDGSLYKKMYASQLLE 593
LL + +G LY +++ Q E
Sbjct: 554 LLAR-NG-LYAQLHNMQFRE 571
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 359 bits (922), Expect = 2e-99
Identities = 182/517 (35%), Positives = 288/517 (55%), Gaps = 12/517 (2%)
Query: 81 GIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHAT 140
+ +V + + + Y ++ G ++A+ +R ++ L+ F+D N+S E+ R T T
Sbjct: 66 VVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDT 125
Query: 141 QSVRSVVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKRVRHI 200
++SV+ ++ LR+ L +G +++MF+ P L+ ++ PL +L + + +RVR +
Sbjct: 126 TLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKL 185
Query: 201 MEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIESATS 260
+ I ET+ IR V++F E+ R VE + A+ T
Sbjct: 186 SRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFG---GAVEKAY-EAARQRIRTR 241
Query: 261 PIMETIS-GLSIAGI--ILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRIIL 317
++ I L I +L+ G G +AG + F+ +M ++ L
Sbjct: 242 ALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGEL 301
Query: 318 EGGMVGVRCMFSLLDHPIMIEESPHAVNLPV-GKGTTVFRDVFFSYKQ--GHPVLSGINL 374
+ + LL I+ H LPV +G F V F+Y P L G+NL
Sbjct: 302 QRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNL 361
Query: 375 CFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQ 434
+ G+ ALVGPSG+GKST+ LL+R YDP SG I +DG+++R + + LR R++ V Q
Sbjct: 362 TVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQ 421
Query: 435 DVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQ 494
D LF+ +V NI GRP AT+EE+ A++A+AH+FI +LP+GYDTY+GE G LSGGQ
Sbjct: 422 DPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQ 481
Query: 495 KQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEA 554
+QRIAIARA+L+D IL+LDEATSALD +E LV+QAL LM+GRTT++IAHR++T+++A
Sbjct: 482 RQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKA 541
Query: 555 DHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQL 591
D I+ ++ G++ G L+ + G LY ++ Q
Sbjct: 542 DRIVVMDQGRIVAQGTHAELIAK--GGLYARLARLQF 576
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 328 bits (842), Expect = 3e-90
Identities = 182/516 (35%), Positives = 292/516 (56%), Gaps = 9/516 (1%)
Query: 79 VAGIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTH 138
V G+ I++GI SF+ +Y +S ++ +R+++ ++ + F+D + L R T+
Sbjct: 71 VIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITY 130
Query: 139 ATQSVRSVVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKRVR 198
++ V S + + +R+ +++GL ++MF LSL I+I P+ + +R++ KR R
Sbjct: 131 DSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFR 190
Query: 199 HIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIESA 258
+I + +G + + ++ + G + V F +EV +R + + + K+ S
Sbjct: 191 NISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSI 250
Query: 259 TSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRIILE 318
+ PI++ I+ L++A +L++ S T AG I ++++ P K + +
Sbjct: 251 SDPIIQLIASLALA-FVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 309
Query: 319 GGMVGVRCMFSLLDHPIMIEESPHAVNLPVGKGTTVFRDVFFSYKQG--HPVLSGINLCF 376
GM + +F++LD +E + KG FR+V F+Y G P L IN
Sbjct: 310 RGMAACQTLFAILDLEQEKDEGKRVIERA--KGDIEFRNVTFTY-PGKEVPALRNINFKI 366
Query: 377 KSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDV 436
+GK ALVG SGSGKSTI NLL R YD G I +DG ++RD T +SLR +++ V Q+V
Sbjct: 367 PAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNV 426
Query: 437 FLFSNTVRYNILIGRP-MATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQK 495
LF++T+ NI R + E++ E A+ A A DFI + G DT +GENG LSGGQ+
Sbjct: 427 HLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQR 486
Query: 496 QRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEAD 555
QRIAIARA+LRD IL+LDEATSALDT +E ++ AL L + RT++VIAHR+STI +AD
Sbjct: 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKAD 546
Query: 556 HIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQL 591
I+ +EDG++ E G LL Q +Y +++ Q
Sbjct: 547 EILVVEDGEIVERGTHAELLAQN--GVYAQLHKMQF 580
>gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
Length = 711
Score = 308 bits (790), Expect = 4e-84
Identities = 177/484 (36%), Positives = 268/484 (55%), Gaps = 16/484 (3%)
Query: 109 QRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSVVDIFITSFLRDFLTLVGLIVVM 168
+ ++R LL+ + F+D N++ EL R + TQ++ + + + LR+ + L+GL+ M
Sbjct: 237 REDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFM 296
Query: 169 FLQEPTLSLCTIIIGPLCILGVRILVKRVRHIMEQGMVAIGHIIQNLQETVIGIRIVKSF 228
P L++ T+I PL L ++ KR + + E+ A+ Q +E + G+R V+SF
Sbjct: 297 LWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSF 356
Query: 229 AMEEVMNQRMCNMIKEVEDRLNKVAKIESATSPIMETISGLSIAGIILFSGFLMSKKGTS 288
A EE R ++E LNK + A ++ G+ I ++L+ G + G
Sbjct: 357 AAEEGEASRFKEALEETLQ-LNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKV 415
Query: 289 NAGEIMSFITALLMAYEPAKRIARTRIILEGGM---VGV-RCMFSLLDHPIMIEESPHAV 344
++G ++SF L+ E R + GM VG +F LD I +
Sbjct: 416 SSGNLVSF----LLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLA 471
Query: 345 NLPVGKGTTVFRDVFFSY--KQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRM 402
L + +G F+DV FSY + PVL G+ G++ ALVGPSGSGKST+ LL +
Sbjct: 472 PLNL-EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL 530
Query: 403 YDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEI 462
Y P+ G + +DG+ + L +++ VGQ+ LFS +VR NI G +EE++
Sbjct: 531 YQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAA 590
Query: 463 AKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDT 522
AK+ANAHDFIM P GYDT VGE GS LSGGQKQRIAIARA++R +L+LDEATSALD
Sbjct: 591 AKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDA 650
Query: 523 HTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSL 582
E L++++ SR RT ++IAHR+ST+ AD I+ ++ G V E G K L++ +
Sbjct: 651 ECEQLLQESRSR--ASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQG--C 706
Query: 583 YKKM 586
YK +
Sbjct: 707 YKHL 710
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 301 bits (774), Expect = 3e-82
Identities = 136/305 (44%), Positives = 187/305 (61%), Gaps = 18/305 (5%)
Query: 274 IILFSGFLMSKKGTSNAGEIMSFIT-ALLMAYEPAKRIAR--------TRIILEGGMVGV 324
IL G + +KG GE+++F+ A L+ I R ++ + +
Sbjct: 256 AILVLGAALVQKGQLRVGEVVAFVGFATLL-------IGRLDQVVAFINQVFMAAP--KL 306
Query: 325 RCMFSLLDHPIMIEESPHAVNLPVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTAL 384
F + D + + P A++L KG F DV FSY + ++ K G+ A+
Sbjct: 307 EEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAI 366
Query: 385 VGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVR 444
VGP+G+GKST+INLL R++DP SG I IDG +IR +T +SLR I+ V QD LF+ ++
Sbjct: 367 VGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIE 426
Query: 445 YNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAM 504
NI +GRP AT+EEM A+ A AHDFI P GYDT VGE G LSGG++QR+AIARA+
Sbjct: 427 DNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARAL 486
Query: 505 LRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGK 564
L+D IL+LDEATSALD TE V+ AL LM+GRTT +IAHR+ST+ AD I+ ++G+
Sbjct: 487 LKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGR 546
Query: 565 VSESG 569
V ESG
Sbjct: 547 VVESG 551
>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 694
Score = 287 bits (736), Expect = 6e-78
Identities = 177/540 (32%), Positives = 275/540 (50%), Gaps = 36/540 (6%)
Query: 66 STDIFHVIVVSSTVAGIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYD 125
V+ ++ IF ++ Y + + I E ++YR LL + +++
Sbjct: 174 GLSTLSVLALAMLAVAIFEP--ALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFE 231
Query: 126 SNQSSELQVRFTHATQSVRSVVDI--FIT----SFLRDFLTLVGLIVVMFLQEPTLSLCT 179
S + + R VR + I F+T + + D L +V + VMF PTL+
Sbjct: 232 SRRVGDTVAR-------VRELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTG-- 282
Query: 180 IIIGPLCI-----LGVR-ILVKRVRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEV 233
++IG L + V IL KRV E+ A L E+V GI +K+ A E
Sbjct: 283 VVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSF----LVESVTGIETIKATATEPQ 338
Query: 234 MNQRMCNMIKEVEDRLNKVAKIESATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEI 293
R + +V + + +E I L+ A I+L+ G + G + G++
Sbjct: 339 FQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFA-ILLWFGAHLVIGGALSPGQL 397
Query: 294 MSFITALLMAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPIMIEESPHA--VNLPVGKG 351
++F +P R+A+ + + + + +L+ P E A LP +G
Sbjct: 398 VAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPT---EPRSAGLAALPELRG 454
Query: 352 TTVFRDVFFSYKQGHP-VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSI 410
F ++ F Y P VLS +NL K G+ +VGPSGSGKST+ LL R+Y P G +
Sbjct: 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV 514
Query: 411 EIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHD 470
+DG+++ + LR ++ V Q+ LFS ++R NI + P A E +I AK A AHD
Sbjct: 515 LVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHD 574
Query: 471 FIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQ 530
FI LPQGY+T VGE G+NLSGGQ+QRIAIARA++ + IL+ DEATSALD +E L+ +
Sbjct: 575 FISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMR 634
Query: 531 ALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQ 590
+ + +GRT I+IAHR+ST+ D II +E G+++ESG + LL + LY +++ Q
Sbjct: 635 NMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQ--GLYARLWQQQ 692
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 267 bits (684), Expect = 7e-72
Identities = 165/501 (32%), Positives = 264/501 (52%), Gaps = 31/501 (6%)
Query: 107 EQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSVVDIFITSFLRDFLTLV---- 162
E + YR+L + EFY +++ +L R AT V VV F LTLV
Sbjct: 70 ELREDFYRQLSRQHPEFYLRHRTGDLMAR---ATNDVDRVV--FAAG--EGVLTLVDSLV 122
Query: 163 ---GLIVVMFLQ-EPTLSLCTIIIGPLCILGVRILVKRVRHIMEQGMVAIGHIIQNLQET 218
+++VM Q L+L ++ P+ + ++ ++ + A + QE+
Sbjct: 123 MGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQES 182
Query: 219 VIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIESATSPIMETISGLS----IAGI 274
+ IR++K+F +E+ + ++ + +VA+I++ P + G++ I G
Sbjct: 183 LTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGG- 241
Query: 275 ILFSGFLMSKKGTSNAGEIMSFITAL-LMAYEPAKRIARTRIILEGGMVGVRCMFSLLDH 333
G M G+ G++ SF+ L LM + P +A I+E G + ++L
Sbjct: 242 ----GSWMVVNGSLTLGQLTSFVMYLGLMIW-PMLALAWMFNIVERGSAAYSRIRAMLAE 296
Query: 334 PIMIEESPHAVNLPVGKGTTVFRDVFFSYKQG-HPVLSGINLCFKSGKMTALVGPSGSGK 392
++++ +P G+G F+Y Q HP L +N K G+M + GP+GSGK
Sbjct: 297 APVVKDGSEP--VPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGK 354
Query: 393 STIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRP 452
ST+++L+ R +D S G I I + + S R R++ V Q FLFS+TV NI +GRP
Sbjct: 355 STLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP 414
Query: 453 MATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILV 512
AT++E+ +A+ A+ HD I+ LPQGYDT VGE G LSGGQKQRI+IARA+L + IL+
Sbjct: 415 DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILI 474
Query: 513 LDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQK 572
LD+A SA+D TE+ + L + +GRT I+ AHR+S + EA I+ ++ G +++ G+
Sbjct: 475 LDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHD 534
Query: 573 YLLQQKDGSLYKKMYASQLLE 593
L QQ Y+ MY Q LE
Sbjct: 535 QLAQQS--GWYRDMYRYQQLE 553
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related.
Length = 585
Score = 264 bits (675), Expect = 6e-71
Identities = 170/473 (35%), Positives = 264/473 (55%), Gaps = 36/473 (7%)
Query: 139 ATQSVRSVVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKRVR 198
AT+++ + F+ L F+ L LI F + LS+ +++G L IL +++++R +
Sbjct: 122 ATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTK 181
Query: 199 HIMEQGMVAIGH----IIQNLQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNK-VA 253
G A+ H + +++ +++ + +V S+ N I+ L +
Sbjct: 182 ----NGQAAVEHHYHNVFKHVSDSISNVSVVHSY-----------NRIEAETSALKQFTN 226
Query: 254 KIESATSPIME----------TISGLSIAGIILFSGFLMSKKGTSNAGEIMSFI--TALL 301
+ SA P+++ S +S+ I++ L+ KG + GE+++FI LL
Sbjct: 227 NLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLV-IKGELSVGEVIAFIGFANLL 285
Query: 302 MAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPIMIEESPHAVNLPVGKGTTVFRDVFFS 361
+ T+I + F L D EE A LP KG FR + F
Sbjct: 286 IGRLDQMSGFITQIF--EARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFE 343
Query: 362 YKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT 421
+ + ++ K+G+ A+VGP+G+GK+T+INLL R+YDP+ G I IDGI+I +T
Sbjct: 344 FANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVT 403
Query: 422 FSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDT 481
SLR+ I+ V QD LF+ ++R NI +GR AT+EE+ E AK+A AHDFI+ GYDT
Sbjct: 404 RESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDT 463
Query: 482 YVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTT 541
VGE G+ LSGG++QR+AIARA+L++ ILVLDEATSALD TE V+ A+ L + RTT
Sbjct: 464 LVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTT 523
Query: 542 IVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLEN 594
+IAHR+ST+ AD ++F++ G++ E G + L+ QKDG YK + S LL N
Sbjct: 524 FIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELI-QKDGRFYKLLRRSGLLTN 575
>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export.
Length = 694
Score = 256 bits (657), Expect = 9e-69
Identities = 150/534 (28%), Positives = 251/534 (47%), Gaps = 60/534 (11%)
Query: 73 IVVSSTVAGIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFY-DSNQSSE 131
V++ VA + + +++Y+L AG K++ R+L ME S S
Sbjct: 187 WVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEARPASVGSFA 246
Query: 132 LQVRFTHATQSVRSVVDIFITSFLRDFLTLVGLI---------VVMFLQEPTLSLCTIII 182
Q+R +SVR F TS TL LI +V+ + L ++
Sbjct: 247 NQLR---EFESVRD----FFTS-----ATLTALIDLPFALLFLLVIAIIGGPLVWVPLVA 294
Query: 183 GPLCILGVRILVKRVRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCNMI 242
PL +L +L + + + E+ M L E++ G+ +K+ E +R +
Sbjct: 295 IPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTV 354
Query: 243 KEVEDRLNKVAKIESATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEI--------- 293
+ K + + + + I L I++ +L+S GE+
Sbjct: 355 AALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLIS------DGELTMGGLIACV 408
Query: 294 ---------MSFITALLMAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPIMIEESPHAV 344
+ + LL Y+ AK + + + L P+ E +
Sbjct: 409 MLSGRALAPLGQLAGLLTRYQQAKT----------ALQSLDELMQL---PVERPEGTRFL 455
Query: 345 NLPVGKGTTVFRDVFFSYK-QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMY 403
+ P +G FR+V F+Y Q P L ++L + G+ A++G GSGKST++ LL+ +Y
Sbjct: 456 HRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY 515
Query: 404 DPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIA 463
P+ GS+ +DG++IR I + LR I YV QD LF T+R NI +G P A +EE++ A
Sbjct: 516 QPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAA 575
Query: 464 KSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTH 523
+ A +F+ P G D +GE G +LSGGQ+Q +A+ARA+LRD IL+LDE TSA+D
Sbjct: 576 ELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNR 635
Query: 524 TENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQ 577
+E + L R + G+T +++ HR S + D II +++G++ G + +L+
Sbjct: 636 SEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689
>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit.
Unfortunately, the gene symbol nomenclature adopted
based on this operon in B. subtilis assigns cydC to the
third gene in the operon where this gene is actually
homologous to the E. coli cydD gene. We have chosen to
name all homologs in this family in accordance with the
precedence of publication of the E. coli name, CydD.
Length = 529
Score = 256 bits (655), Expect = 2e-68
Identities = 139/505 (27%), Positives = 238/505 (47%), Gaps = 50/505 (9%)
Query: 78 TVAGIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFT 137
+A +++ + ++ + A ++ ++ + ++ + G + S EL T
Sbjct: 49 ALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELA---T 105
Query: 138 HATQSVRSVVDIF----ITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRIL 193
A + V ++ F L + L L V F + L ++ PL I IL
Sbjct: 106 LALEGVEALDGYFARYLPQLVLAVIIPLAILAAV-FPADWISGLILLLTAPL-IPIFMIL 163
Query: 194 V-KRVRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNK- 251
+ + + A+ + + + + G+ +K F + I + +
Sbjct: 164 IGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAK----AQAAAIARSSEEYRER 219
Query: 252 ---VAKIESATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLM------ 302
V +I +S ++E + LS+A + ++ GF + + T L +
Sbjct: 220 TMRVLRIAFLSSAVLELFATLSVALVAVYIGFRL-------LAGDLDLATGLFVLLLAPE 272
Query: 303 AYEPAKRI-----ARTRIILEGGMVGVRCMFSLLDHPIMIEESPHAVNLPVGKGTT---V 354
Y P +++ AR G+ +F++LD P P A PV
Sbjct: 273 FYLPLRQLGADYHARAD-----GVAAAEALFAVLDAPR-----PLAGKAPVTAAPAPSLE 322
Query: 355 FRDVFFSYK-QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEID 413
F + +Y + P L ++ G+ ALVGPSG+GKST++NLL+ DP+ GSI ++
Sbjct: 323 FSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVN 382
Query: 414 GINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIM 473
G+ + D S R++I++V Q FLF+ T+ NI + RP A++ E+ + A +F+
Sbjct: 383 GVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVA 442
Query: 474 SLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALS 533
+LPQG DT +GE G+ LSGGQ QR+A+ARA LRD +L+LDE T+ LD TE LV +AL
Sbjct: 443 ALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALR 502
Query: 534 RLMQGRTTIVIAHRISTIIEADHII 558
L QGRT +++ HR++ AD I+
Sbjct: 503 ALAQGRTVLLVTHRLALAERADRIV 527
>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes an multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHPM, Nitrile Hydratase
Propeptide Microcin.
Length = 710
Score = 246 bits (630), Expect = 1e-65
Identities = 156/525 (29%), Positives = 259/525 (49%), Gaps = 43/525 (8%)
Query: 84 IVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSV 143
+++G+ +++Q YYL + + +L+ + F+ + ++ R Q
Sbjct: 205 LLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLNDQVA 264
Query: 144 RSVVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVR-ILVKRV----R 198
+ T+ L D + LV ++M L +P L+L I + +L ++ + +RV R
Sbjct: 265 EFLSGQLATTAL-DAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRR 323
Query: 199 HIMEQGMVAIGHIIQNLQETVIGIRIVKSFAME-EVMNQ------RMCNMIKEVEDRLNK 251
+ G + G I LQ I +K+ +E + ++ ++ N + L
Sbjct: 324 LQQDAGKLT-GVAISGLQS----IETLKASGLESDFFSRWAGYQAKLLNA----QQELGV 374
Query: 252 VAKIESATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRI- 310
+ +I + ++ L+ A I++ G + + G G +++F + + EP +
Sbjct: 375 LTQILGV---LPTLLTSLNSALILVVGGLRVME-GQLTIGMLVAFQSLMSSFLEPVNNLV 430
Query: 311 --ARTRIILEGGMVGVRCMFSLLDHPI----MIEESPHAVNLPVGK--GTTVFRDVFFSY 362
T LEG + + +L +P+ EE+P A + P + G R++ F Y
Sbjct: 431 GFGGTLQELEGDLNRLD---DVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGY 487
Query: 363 -KQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT 421
P++ +L + G+ ALVG SGSGKSTI L+ +Y P SG I DGI +I
Sbjct: 488 SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIP 547
Query: 422 FSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDT 481
L ++ V QD+FLF TVR N+ + P + +++ K A HD I S P GYD
Sbjct: 548 REVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDA 607
Query: 482 YVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTT 541
+ E G+NLSGGQ+QR+ IARA++R+ IL+LDEATSALD TE ++ L R +G T
Sbjct: 608 ELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTC 665
Query: 542 IVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKM 586
I++AHR+STI + D II +E GKV + G + L G Y ++
Sbjct: 666 IIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV--GGAYARL 708
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc.
Length = 708
Score = 236 bits (603), Expect = 2e-62
Identities = 151/551 (27%), Positives = 285/551 (51%), Gaps = 24/551 (4%)
Query: 39 IVAMITVSLMTSCSAWIMRDVMNAMVASTDIFHVIVVSSTVAGIFIVKGIASFVQNYYLS 98
++A I V+L++ ++ ++ +++ + + + ++S + +I++ I S++Q + L+
Sbjct: 162 VIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLN 221
Query: 99 CAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSVVDIFITSFLRDF 158
G + + + L + M F+ + ++ E+ RFT A+ + ++ ++ FL D
Sbjct: 222 VLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSIIDALASTILSLFL-DM 280
Query: 159 LTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRI---LVKRVRH-IMEQGMVAIGHIIQN 214
LV + + + Q L L +++ P+ + + + ++ H M+ V II++
Sbjct: 281 WILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIED 340
Query: 215 LQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNK--VAKIESATSPIMETISGLSIA 272
L GI +KS E ++ + E D LNK + ++ ++ L +
Sbjct: 341 LN----GIETIKSLTSEAERYSKIDS---EFGDYLNKSFKYQKADQGQQAIKAVTKLILN 393
Query: 273 GIILFSGFLMSKKGTSNAGEIMSFITALLMAY--EPAKRIARTRIILEGGMVGVRCMFSL 330
+IL++G + +G G++++F L++Y P + I + L+ V + +
Sbjct: 394 VVILWTGAYLVMRGKLTLGQLITF--NALLSYFLTPLENIINLQPKLQAARVANNRLNEV 451
Query: 331 LDHPIMIEESPHAVNLPVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGS 390
L G V DV +SY G +LS I+L K T +VG SGS
Sbjct: 452 YLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGS 511
Query: 391 GKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIG 450
GKST+ LL+ + SG I ++G +++DI +LR+ I+Y+ Q+ ++FS ++ N+L+G
Sbjct: 512 GKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLG 571
Query: 451 -RPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGH 509
+ +++E+ + A D I ++P GY T + E GS++SGGQKQRIA+ARA+L D
Sbjct: 572 AKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSK 631
Query: 510 ILVLDEATSALDTHTENLVRQALSRL--MQGRTTIVIAHRISTIIEADHIIFIEDGKVSE 567
+L+LDE+TS LDT TE ++ ++ L +Q +T I +AHR+S ++D II ++ GK+ E
Sbjct: 632 VLILDESTSNLDTITE---KKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIE 688
Query: 568 SGDQKYLLQQK 578
G LL +
Sbjct: 689 QGSHDELLDRN 699
>gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 217 bits (555), Expect = 6e-57
Identities = 84/225 (37%), Positives = 146/225 (64%), Gaps = 3/225 (1%)
Query: 364 QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFS 423
G + +N +G+ ALVGPSG+GK++++N L+ + P GS++I+GI +R++
Sbjct: 361 DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-FLPYQGSLKINGIELRELDPE 419
Query: 424 SLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYV 483
S R+ +S+VGQ+ L T+R N+L+G P A++E++ + ++A +F+ LPQG DT +
Sbjct: 420 SWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPI 479
Query: 484 GENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIV 543
G+ + LS GQ QR+A+ARA+L+ +L+LDE T++LD H+E LV QAL+ + +TT++
Sbjct: 480 GDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLM 539
Query: 544 IAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYA 588
+ H++ + + D I ++DG++ + GD L Q G L+ + A
Sbjct: 540 VTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQA--GGLFATLLA 582
>gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 215 bits (549), Expect = 3e-56
Identities = 88/248 (35%), Positives = 146/248 (58%), Gaps = 4/248 (1%)
Query: 341 PHAVNLPVGKGTTVFRDVFFSY-KQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLL 399
P + + +V F+Y Q PVL G++L K+G+ AL+G +G GKST++ LL
Sbjct: 327 PTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLL 386
Query: 400 MRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEM 459
R +DP G I ++G I D + ++LR+ IS V Q V LFS T+R N+L+ P A++E +
Sbjct: 387 TRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEAL 446
Query: 460 IEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSA 519
IE+ + + +G + ++GE G LSGG+++R+ IARA+L D +L+LDE T
Sbjct: 447 IEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEG 505
Query: 520 LDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKD 579
LD TE + + L+ Q +T ++I HR++ + + D I +++G++ E G + LL Q+
Sbjct: 506 LDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQG 565
Query: 580 GSLYKKMY 587
Y ++
Sbjct: 566 R--YYQLK 571
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 211 bits (540), Expect = 3e-55
Identities = 144/481 (29%), Positives = 251/481 (52%), Gaps = 33/481 (6%)
Query: 124 YDSNQSSELQVRFTHATQSVRSVVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIG 183
+D+ +L R T+ T+ +R + + + LR + ++V MF + ++L I+I
Sbjct: 116 FDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIF 175
Query: 184 PLCILGVRI-------LVKRVRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQ 236
P ++ + I +V+RVR + I E + G+ +++ F + +
Sbjct: 176 PAVLVVMVIYQRYSTPIVRRVRAYL-------ADINDGFNEVINGMSVIQQFRQQARFGE 228
Query: 237 RMCNMIKEVEDRLNKVAKIESAT------SPIMETISGLSIAGIILFSGFLMSKKGTSNA 290
RM R + +A++++ P++ S L + G+++ GF S GT
Sbjct: 229 RM-----GEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF--SASGTIEV 281
Query: 291 GEIMSFITALLMAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPIMIEESPHAVNLPVGK 350
G + +FI+ L EP + + +L+ +V +F L+D P + + P+
Sbjct: 282 GVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGP---RQQYGNDDRPLQS 338
Query: 351 GTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSI 410
G +V F+Y+ + VL INL S ALVG +GSGKST+ +LLM Y + G I
Sbjct: 339 GRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI 398
Query: 411 EIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHD 470
+DG + ++ S LR+ ++ V QD + ++T N+ +GR + +EE++ + ++ +
Sbjct: 399 RLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDI-SEEQVWQALETVQLAE 457
Query: 471 FIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQ 530
SLP G T +GE G+NLS GQKQ +A+AR +++ IL+LDEAT+ +D+ TE ++Q
Sbjct: 458 LARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQ 517
Query: 531 ALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQ 590
AL+ + + T +VIAHR+STI+EAD I+ + G+ E G + LL + Y +MY Q
Sbjct: 518 ALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ--GRYWQMYQLQ 575
Query: 591 L 591
L
Sbjct: 576 L 576
>gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 529
Score = 199 bits (509), Expect = 1e-51
Identities = 137/525 (26%), Positives = 229/525 (43%), Gaps = 39/525 (7%)
Query: 38 SIVAMITVSLMTSCSAWIMRDVMNAMVASTDIFHVIVVSSTVAGIFIVKGIASFVQNYYL 97
S VA++ VS A M V+ VA V+ GI + + +++
Sbjct: 28 SAVALLGVSAWLISRAAEMPPVLYLSVA--------AVAVRAFGI--GRAVFRYLERLVG 77
Query: 98 SCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSVVDIFITSFLRD 157
A + + ++Y RL + + Q+ +L R +++ + I +
Sbjct: 78 HDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVA 137
Query: 158 FLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRILVKRVRHIMEQGMVAI-GHIIQNLQ 216
+ + + L +L L ++ R E + + + Q L
Sbjct: 138 LVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLT 197
Query: 217 ETVIGI-RIVKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIESATSPIMETISGLSIAGII 275
+ + G +V A++ + Q ++ + L + + + + L AG+
Sbjct: 198 DALDGAADLVAYGALDPALAQ-----VEAADRELLAAERRAARATGLGAAAQLL-AAGLA 251
Query: 276 LFSGFLMSKKGTSNAGEIMSFITAL----LMAYEP-------AKRIARTRIILEGGMVGV 324
+ ++ + + L L A+E A+ + R R E
Sbjct: 252 VLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAE------ 305
Query: 325 RCMFSLLD--HPIMIEESPHAVNLPVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMT 382
R + + P P A L +GK T RD+ F Y PVL G++L G+
Sbjct: 306 R-IEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERV 364
Query: 383 ALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNT 442
A++GPSGSGKST++ LL + DP G + +DG+++ + LR RIS QD LF T
Sbjct: 365 AILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQ-DELRRRISVFAQDAHLFDTT 423
Query: 443 VRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIAR 502
VR N+ +GRP AT+EE+ + D++ SLP G DT +GE G+ LSGG++QR+A+AR
Sbjct: 424 VRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALAR 483
Query: 503 AMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHR 547
A+L D IL+LDE T LD TE+ + + L + G+T +VI H
Sbjct: 484 ALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528
>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 544
Score = 198 bits (505), Expect = 4e-51
Identities = 93/247 (37%), Positives = 144/247 (58%), Gaps = 5/247 (2%)
Query: 336 MIEESP---HAVNLPVGKGTTVFRDVFFSYKQG-HPVLSGINLCFKSGKMTALVGPSGSG 391
++ P A+ LP +G +V G P L GI+ ++G+ A++GPSGSG
Sbjct: 297 LLANYPSRDPAMPLPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSG 356
Query: 392 KSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGR 451
KST+ L++ ++ P+SGS+ +DG +++ + + I Y+ QDV LF TV NI
Sbjct: 357 KSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFG 416
Query: 452 PMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHIL 511
A E++IE AK A H+ I+ LP GYDT +G G+ LSGGQ+QRIA+ARA+ D ++
Sbjct: 417 ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLV 476
Query: 512 VLDEATSALDTHTENLVRQALSRL-MQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGD 570
VLDE S LD E + A+ L +G T +VI HR S + D I+ ++DG+++ G+
Sbjct: 477 VLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGE 536
Query: 571 QKYLLQQ 577
+ +L +
Sbjct: 537 RDEVLAK 543
>gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved.
Length = 1522
Score = 187 bits (477), Expect = 6e-48
Identities = 149/542 (27%), Positives = 263/542 (48%), Gaps = 35/542 (6%)
Query: 52 SAWIMRDVMNAMVASTDIFHVIVVSSTVAGIFIVKGIASFVQNYYLSCAGNSIIAEQ--Q 109
S W ++N +T + S + I++G A F Y ++ + I A +
Sbjct: 989 SLWTDDPMVNGTQNNTS-----LRLSVYGALGILQGFAVFG--YSMAVSIGGIQASRVLH 1041
Query: 110 RKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSVVDIFITSFLRDFLTLVGLIVVMF 169
+ + L+ M F++ S L RF+ +V S++ I F+ ++G ++V+
Sbjct: 1042 QDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVIL 1101
Query: 170 LQEPTLSLCTIIIGPLCILGV---RILVKRVRHIMEQGMVAIGHIIQNLQETVIGIRIVK 226
L P + +II PL +L R V R + V+ + + ET++G+ +++
Sbjct: 1102 LATP---IAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIR 1158
Query: 227 SFAMEEVMNQRMCNMIKEVEDRLNKVAKIESATSPIMETISGLSIAG--IILFSG-FLMS 283
+F EE Q +++ N+ A S + + L G I+LF+ F +
Sbjct: 1159 AF--EE---QERFIHQSDLKVDENQKAYYPSIVANRWLAV-RLECVGNCIVLFAALFAVI 1212
Query: 284 KKGTSNAGEIMSFITALLMAYEPAKRIARTRIILEGGMVGVRCM--FSLLDH--PIMIEE 339
+ + +AG + ++ L + R +E +V V + +S + P I+E
Sbjct: 1213 SRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQE 1272
Query: 340 SPHAVNLPVGKGTTVFRDVFFSYKQG-HPVLSGINLCFKSGKMTALVGPSGSGKSTIINL 398
+ P +G FR+ Y++ VL IN+ G+ +VG +G+GKS++
Sbjct: 1273 TAPPSGWP-PRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLG 1331
Query: 399 LMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMA--TE 456
L R+ + + G I IDG+NI I LR +I+ + QD LFS ++R N+ P + ++
Sbjct: 1332 LFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNL---DPFSQYSD 1388
Query: 457 EEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEA 516
EE+ + A+ F+ +LP D E G NLS GQ+Q + +ARA+LR ILVLDEA
Sbjct: 1389 EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEA 1448
Query: 517 TSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQ 576
T+A+D T+NL++ + + T + IAHR++TI++ +I ++ G+V+E G LLQ
Sbjct: 1449 TAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508
Query: 577 QK 578
Q+
Sbjct: 1509 QR 1510
Score = 123 bits (310), Expect = 1e-28
Identities = 74/251 (29%), Positives = 129/251 (51%), Gaps = 25/251 (9%)
Query: 347 PVGKGTTVFRDVFFSYKQGHP-VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDP 405
P + + F++ + P L+GI G + A+VG G GKS++++ L+ D
Sbjct: 631 PGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK 690
Query: 406 SSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKS 465
G + + G ++YV Q ++ ++++R NIL G+ + + +
Sbjct: 691 VEGHVHMKG-------------SVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEAC 737
Query: 466 ANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHT- 524
A D + LP G T +GE G NLSGGQKQR+++ARA+ + I + D+ SA+D H
Sbjct: 738 ALLPDLEI-LPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 796
Query: 525 ----ENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDG 580
E+++ +++ +T I++ H IS + + D II + GK+SE G + LL Q+DG
Sbjct: 797 KHIFEHVI--GPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELL-QRDG 853
Query: 581 SL--YKKMYAS 589
+ + + YA
Sbjct: 854 AFAEFLRTYAP 864
>gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal propeptide
cleavage domain, and an HlyD homolog (TIGR03794). In a
number of genomes, a conserved propeptide sequence with
a classic Gly-Gly motif.
Length = 686
Score = 183 bits (466), Expect = 1e-46
Identities = 137/479 (28%), Positives = 228/479 (47%), Gaps = 42/479 (8%)
Query: 109 QRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSVVDIFITSFLRDFLTLVGLIVVM 168
Q ++ RLL+ + F+ + +L R +Q R + +T+ L L+ L +M
Sbjct: 212 QAAVWDRLLRLPVSFFRQYSTGDLASRAMGISQIRRILSGSTLTTLLSGIFALLNL-GLM 270
Query: 169 FLQEPTLSL-----CTIIIGPLCILGVRILVKRVRHIME-QGMVAIGHIIQNLQETVIGI 222
F L+L + I +LG+ V++ R ++E G I + L + +
Sbjct: 271 FYYSWKLALVAVALALVAIAVTLVLGLL-QVRKERRLLELSG--KISGLTVQLINGISKL 327
Query: 223 RI----VKSFA--MEEVMNQRMCNMIKEVEDRLNKVAKIESATSPIMETISGLSIAGIIL 276
R+ ++FA + QR + +IE+ + + L+ A +
Sbjct: 328 RVAGAENRAFARWAKLFSRQRKLEL---------SAQRIENLLTVFNAVLPVLTSAALFA 378
Query: 277 FSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPIM 336
+ L+ G S G ++F TA +++ ++ + + L +
Sbjct: 379 AAISLLGGAGLS-LGSFLAFNTAFGSFSGAVTQLS-------NTLISILAVIPLWERAKP 430
Query: 337 IEESPHAVNL---PVGK--GTTVFRDVFFSYKQ-GHPVLSGINLCFKSGKMTALVGPSGS 390
I E+ V+ GK G V F Y+ G +L ++L + G+ A+VGPSGS
Sbjct: 431 ILEALPEVDEAKTDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGS 490
Query: 391 GKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIG 450
GKST++ LL+ P SGS+ DG ++ + ++R ++ V Q+ L S ++ NI G
Sbjct: 491 GKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGG 550
Query: 451 RPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHI 510
P+ +E E A+ A + I ++P G T + E G LSGGQ+QR+ IARA++R I
Sbjct: 551 APLTLDEAW-EAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRI 609
Query: 511 LVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESG 569
L+ DEATSALD T+ +V ++L RL T IVIAHR+STI AD I ++ G+V + G
Sbjct: 610 LLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQG 666
>gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 173 bits (439), Expect = 1e-43
Identities = 152/580 (26%), Positives = 254/580 (43%), Gaps = 98/580 (16%)
Query: 73 IVVSSTVAGIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSEL 132
I+ S + GIF + I SF+ ++ + I+ + + + + +F+D+N S+L
Sbjct: 99 IIFSLVLIGIF--QFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKL 156
Query: 133 QVRFTHATQSVRSVVDI-FITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVR 191
+ V + + FIT F +GL + + L+LC + PL +
Sbjct: 157 TSDLDFYLEQVNAGIGTKFITIFTYAS-AFLGLYIWSLFKNARLTLCITCVFPLIYICGV 215
Query: 192 ILVKRVRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLNK 251
I K+V+ + ++ + + ++E ++GIR V S+ E K + + N
Sbjct: 216 ICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGE-----------KTILKKFNL 264
Query: 252 VAKIESA---TSPIMETISGLSIAGIILFS---GFLMSKK------------GTSNAGEI 293
K+ S + ME++ I G IL S GF + + G +
Sbjct: 265 SEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSV 324
Query: 294 MSFITALLMAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPIMIEESPHAVNLPVGKGTT 353
+S + +L++ I + ++ +++ ++E + L K
Sbjct: 325 ISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDDGKKLKDIKKIQ 384
Query: 354 VFRDVFFSY--KQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIE 411
F++V F Y ++ + +N GK A VG SG GKSTI+ L+ R+YDP+ G I
Sbjct: 385 -FKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDII 443
Query: 412 I-DGINIRDITFSSLRERISYVGQDVFLFSNTVRYNI----------------------- 447
I D N++DI R +I V QD LFSN+++ NI
Sbjct: 444 INDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGND 503
Query: 448 --------------------LIGRPMATEEEMIEIAKSANA---------------HDFI 472
+ E+IE+ K+ HDF+
Sbjct: 504 SQENKNKRNSCRAKCAGDLNDMSNTT-DSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFV 562
Query: 473 MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL 532
+LP Y+T VG N S LSGGQKQRI+IARA++R+ IL+LDEATS+LD +E LV++ +
Sbjct: 563 SALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTI 622
Query: 533 SRLM--QGRTTIVIAHRISTIIEADHIIFIEDGKVSESGD 570
+ L + R TI+IAHR+STI A+ I + + + + D
Sbjct: 623 NNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVD 662
Score = 145 bits (368), Expect = 2e-35
Identities = 160/652 (24%), Positives = 280/652 (42%), Gaps = 124/652 (19%)
Query: 40 VAMITVSLMTSCSAWIMRDVMNAMVAST--DIFHVIVVSSTVAGIFIVKGIASFV----Q 93
V +I +S++ + + + ++ A ST D ++ S+ + +V IA F+ +
Sbjct: 827 VTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLK 886
Query: 94 NYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSVVDIFITS 153
NYY + G + +R+++ +L + F+D ++ + + H + V + +
Sbjct: 887 NYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAP-GLLSAHINRDVH-----LLKT 940
Query: 154 FLRDFLTLVGLIVVMFLQEPTLSL--CTIIIGPLC--------ILGVRILVKRVRHIMEQ 203
L + + + +V+FL +S C I+ L + +R + + + ++
Sbjct: 941 GLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKK 1000
Query: 204 GMVAIGHIIQN-------------LQETVIGIRIVKSFAMEEVMNQRMCNMIKEVEDRLN 250
+ G + +QE + V + +E+ CN+I++ D N
Sbjct: 1001 EINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYF----CNLIEKAIDYSN 1056
Query: 251 KVAKIESATSPIMETISG---LSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPA 307
K K ++ + ++ S L I + G + ++GT + M + L A
Sbjct: 1057 KGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYA 1116
Query: 308 KRIARTRIILEGGMVGVRCMFSLLDHPIMIEESPHAV---------NLPVGKGTTVFRDV 358
++ + L+G + F +P++I +S V N KG DV
Sbjct: 1117 GKL----MSLKGDSENAKLSFEKY-YPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDV 1171
Query: 359 FFSY--KQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSI------ 410
F Y + P+ + S K TA+VG +GSGKST+++LLMR YD +
Sbjct: 1172 NFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNE 1231
Query: 411 --------------EIDGINIRDIT-FSSLRERISYVGQDVFLFSN-------------- 441
E + ++++ FS +E S G+D +F N
Sbjct: 1232 HTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGS--GEDSTVFKNSGKILLDGVDICDY 1289
Query: 442 ---------------------TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYD 480
++ NI G+ AT E++ K A +FI SLP YD
Sbjct: 1290 NLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYD 1349
Query: 481 TYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--G 538
T VG G +LSGGQKQRIAIARA+LR+ IL+LDEATS+LD+++E L+ + + +
Sbjct: 1350 TNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKAD 1409
Query: 539 RTTIVIAHRISTIIEADHIIFIEDGK-----VSESGDQKYLLQQKDGSLYKK 585
+T I IAHRI++I +D I+ + V G + LL +DG +YKK
Sbjct: 1410 KTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDG-VYKK 1460
>gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 158 bits (402), Expect = 3e-39
Identities = 86/242 (35%), Positives = 136/242 (56%), Gaps = 7/242 (2%)
Query: 351 GTTVFRDVFFSYK-QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGS 409
G+ F DV Y+ + PVL G++ + +VG +G+GKS+++N L R+ + G
Sbjct: 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGR 1295
Query: 410 IEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMA--TEEEMIEIAKSAN 467
I IDG +I LR+ + + Q LFS TVR+N+ P + ++ E + A+
Sbjct: 1296 ILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNL---DPFNEHNDADLWESLERAH 1352
Query: 468 AHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527
D I G D V E G N S GQ+Q +++ARA+LR ILVLDEAT+A+D T+ L
Sbjct: 1353 LKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDAL 1412
Query: 528 VRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMY 587
+++ + + T ++IAHR++TII+ D I+ ++ G+V E + LL +GS + KM
Sbjct: 1413 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLL-SNEGSAFSKMV 1471
Query: 588 AS 589
S
Sbjct: 1472 QS 1473
Score = 123 bits (310), Expect = 1e-28
Identities = 86/278 (30%), Positives = 144/278 (51%), Gaps = 27/278 (9%)
Query: 324 VRCMFSL--LDHPIMIEESPHAVNLPVGKG--TTVFRDVFFSY--KQGHPVLSGINLCFK 377
V SL L+ ++ EE N P+ G ++ +FS+ K P LS INL
Sbjct: 582 VNANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVP 641
Query: 378 SGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVF 437
G + A+VG +G GK+++I+ ++ P S + + +R ++YV Q +
Sbjct: 642 VGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV------------IRGTVAYVPQVSW 689
Query: 438 LFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQR 497
+F+ TVR NIL G P E I +A HD + LP G T +GE G N+SGGQKQR
Sbjct: 690 IFNATVRDNILFGSPFDPERYERAIDVTALQHD-LDLLPGGDLTEIGERGVNISGGQKQR 748
Query: 498 IAIARAMLRDGHILVLDEATSALDTHTENLV-RQALSRLMQGRTTIVIAHRISTIIEADH 556
+++ARA+ + + + D+ SALD H V + + ++G+T +++ +++ + + D
Sbjct: 749 VSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDR 808
Query: 557 IIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLEN 594
II + +G + E G + L +G L++K L+EN
Sbjct: 809 IILVHEGMIKEEGTYEELS--NNGPLFQK-----LMEN 839
>gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 150 bits (381), Expect = 7e-37
Identities = 94/271 (34%), Positives = 147/271 (54%), Gaps = 14/271 (5%)
Query: 334 PIMIEESPHAVNLPVGKGTTVFRDVFFSYKQG-HPVLSGINLCFKSGKMTALVGPSGSGK 392
+IE + P G+ F DV Y+ G PVL G++ + +VG +G+GK
Sbjct: 1217 TAIIENNRPVSGWPSR-GSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGK 1275
Query: 393 STIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRP 452
S+++N L R+ + G I ID ++ + LR +S + Q LFS TVR+NI P
Sbjct: 1276 SSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNI---DP 1332
Query: 453 MA--TEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHI 510
+ + ++ E + A+ D I P G D V E G N S GQ+Q +++ARA+LR I
Sbjct: 1333 FSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKI 1392
Query: 511 LVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGD 570
LVLDEAT+++D T++L+++ + + T +VIAHR++TII+ D I+ + G+V E
Sbjct: 1393 LVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDS 1452
Query: 571 QKYLLQQKDGSLYKKMYAS------QLLENL 595
+ LL +D S + +M S Q L NL
Sbjct: 1453 PQELL-SRDTSAFFRMVHSTGPANAQYLSNL 1482
Score = 118 bits (296), Expect = 5e-27
Identities = 115/443 (25%), Positives = 209/443 (47%), Gaps = 48/443 (10%)
Query: 165 IVVMFLQEPTLSLCTIIIGPLCILGVRILVKRVRHIMEQGMVAIGHIIQNLQETVIGIRI 224
+V+++ Q SL +I L I ++V+++R + ++G+ + + E + +
Sbjct: 432 MVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDT 491
Query: 225 VKSFAMEEVMNQRMCNMIKEVEDRLNKVAKIESA-------TSPIMETISGLSIAGIILF 277
VK +A E+ R+ I+ E + A++ SA + P++ T+ +S +L
Sbjct: 492 VKCYAWEKSFESRI-QGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTL--VSFGVFVLL 548
Query: 278 SGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPIMI 337
G L + ++ + L M ++ + L+ ++ ++
Sbjct: 549 GGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQ-----------RIEELLLS 597
Query: 338 EESPHAVNLPVGKGTTVF--RDVFFSY--KQGHPVLSGINLCFKSGKMTALVGPSGSGKS 393
EE A N P+ G ++ +FS+ K P LS INL G + A+VG +G GK+
Sbjct: 598 EERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKT 657
Query: 394 TIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPM 453
++I+ ++ + S + +R ++YV Q ++F+ TVR NIL G
Sbjct: 658 SLISAMLGELSHAETSSVV------------IRGSVAYVPQVSWIFNATVRENILFGSDF 705
Query: 454 ATEEEMIEIAKSANAHDFIMSLPQGYD-TYVGENGSNLSGGQKQRIAIARAMLRDGHILV 512
+E I +A HD + L G D T +GE G N+SGGQKQR+++ARA+ + I +
Sbjct: 706 ESERYWRAIDVTALQHD--LDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYI 763
Query: 513 LDEATSALDTHTENLV-RQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQ 571
D+ SALD H + V + ++G+T +++ +++ + D II + +G + E G
Sbjct: 764 FDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTF 823
Query: 572 KYLLQQKDGSLYKKMYASQLLEN 594
L K GSL+KK L+EN
Sbjct: 824 AEL--SKSGSLFKK-----LMEN 839
>gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 129 bits (326), Expect = 2e-30
Identities = 88/255 (34%), Positives = 131/255 (51%), Gaps = 20/255 (7%)
Query: 340 SPHAVNLPVGKGTTVFRDVFFSYKQGHP-VLSGINLCFKSGKMTALVGPSGSGKSTIINL 398
+PH PV G+ VF V Y++G P VL G++ + +VG +GSGKST++
Sbjct: 1300 APH----PVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLT 1355
Query: 399 LMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPM--ATE 456
MRM + G I ++G I LR + S + QD LF TVR N+ P A+
Sbjct: 1356 FMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNV---DPFLEASS 1412
Query: 457 EEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVL-DE 515
E+ + + + S +G D+ V E GSN S GQ+Q + +ARA+L+ G +L DE
Sbjct: 1413 AEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDE 1472
Query: 516 ATS----ALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQ 571
AT+ ALD + V A S T I IAHR+ T+ + D II ++ G V+E G
Sbjct: 1473 ATANIDPALDRQIQATVMSAFS----AYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSP 1528
Query: 572 KYLLQQKDGSLYKKM 586
+ L+ + S++ M
Sbjct: 1529 RELVMNRQ-SIFHSM 1542
Score = 122 bits (308), Expect = 2e-28
Identities = 72/232 (31%), Positives = 123/232 (53%), Gaps = 27/232 (11%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427
+L +++ GK+T ++G +GSGKST++ L+ ++ S G + E
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV--------------WAE 720
Query: 428 R-ISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDF---IMSLPQGYDTYV 483
R I+YV Q ++ + TVR NIL EE+ +A + + L G +T +
Sbjct: 721 RSIAYVPQQAWIMNATVRGNIL----FFDEEDAARLADAVRVSQLEADLAQLGGGLETEI 776
Query: 484 GENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHT-ENLVRQALSRLMQGRTTI 542
GE G NLSGGQK R+++ARA+ + + +LD+ SALD H E +V + + G+T +
Sbjct: 777 GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRV 836
Query: 543 VIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLEN 594
+ H++ + AD+++ + DG+V SG ++ SLY + A++L EN
Sbjct: 837 LATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT---SLYATL-AAELKEN 884
>gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins.
Length = 206
Score = 128 bits (323), Expect = 5e-30
Identities = 60/210 (28%), Positives = 101/210 (48%), Gaps = 23/210 (10%)
Query: 363 KQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITF 422
+L +NL + GKM A++G SGSGKST++N++ + SG + ++G +
Sbjct: 8 FGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNS 67
Query: 423 SS----LRERISYVGQDVFLFSN-TVRYNILIG-----RPMATEEE-MIEIAKSANAHDF 471
RE++ Y+ Q+ L N TV N+ +G + E E +
Sbjct: 68 KKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVG---- 123
Query: 472 IMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQA 531
L + E LSGG++QR+A+ARA+L+D +++ DE T +LD + V
Sbjct: 124 ---LNLKLKQKIYE----LSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDL 176
Query: 532 LSRLM-QGRTTIVIAHRISTIIEADHIIFI 560
L L +G+T I++ H +AD +I +
Sbjct: 177 LLELNDEGKTIIIVTHDPEVAKQADRVIEL 206
>gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 125 bits (316), Expect = 3e-29
Identities = 75/218 (34%), Positives = 120/218 (55%), Gaps = 12/218 (5%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
F++V +S G +L I++ F+ G + +VGPSG+GKST+I L+ R+ DP+ GSI IDG
Sbjct: 6 FKEVSYS-SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDG 64
Query: 415 INIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMS 474
++I+ I LR +I V Q LF TV+ NI G PM E+ +++ ++ +S
Sbjct: 65 VDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYG-PMLKGEKNVDV-------EYYLS 116
Query: 475 LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSR 534
+ Y + NLSGG+ QR++IAR + + +L+LDE TSALD + ++ + + +
Sbjct: 117 IVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVK 176
Query: 535 LMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569
L T I I H + D+ F+ G + E
Sbjct: 177 LKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates.
Length = 243
Score = 119 bits (301), Expect = 2e-27
Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 26/223 (11%)
Query: 361 SYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI 420
Y G L INL G+ A++GPSG+GKST++ + R+ +PSSGSI ++G +I +
Sbjct: 10 VYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKL 69
Query: 421 TFSSLRE---RISYVGQDVFLFSN-TVRYNILIGRPMAT----------EEEMIEIAKSA 466
LR+ RI + Q L TV N+L GR EE E A SA
Sbjct: 70 RGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSA 129
Query: 467 NAHDFIMSLPQ-GYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTE 525
L + G + LSGGQ+QR+AIARA+ + +++ DE ++LD T
Sbjct: 130 --------LERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTS 181
Query: 526 NLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKV 565
V L R+ + G T I+ H++ + AD I+ ++ G++
Sbjct: 182 KQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224
>gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 117 bits (294), Expect = 1e-26
Identities = 75/236 (31%), Positives = 113/236 (47%), Gaps = 22/236 (9%)
Query: 355 FRDVFFSYKQGH-PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEID 413
+V FSY L ++ G+ A++G +GSGKSTI +L + P SG I+ID
Sbjct: 10 VENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKID 69
Query: 414 GINIRDITFSSLRERISYVGQ--DVFLFSNTVRYNILIG--RPMATEEEMIEI----AKS 465
GI I +R++I + Q D TV +I G ++M +I AK
Sbjct: 70 GITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKK 129
Query: 466 ANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTE 525
D++ PQ NLSGGQKQR+AIA + + I++ DE+TS LD +
Sbjct: 130 VGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGK 178
Query: 526 NLVRQALSRLMQGR--TTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKD 579
+++ + L + R T I I H + I AD +I +GK+ G K +L K+
Sbjct: 179 REIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNKE 234
>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se.
Length = 1490
Score = 114 bits (286), Expect = 8e-26
Identities = 90/337 (26%), Positives = 157/337 (46%), Gaps = 28/337 (8%)
Query: 274 IILFSGFLMSKKGTSNAGE-IMSFITALLMAYEPAKRIA-RTRIILEGGMVGVRCMFSLL 331
+ F GT+ GE + I L M + A + I ++G M V +F +
Sbjct: 1120 VFFFIAVTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFI 1179
Query: 332 DHP-----------------IMIEESPHAVNLPVGKGTTVFRDVFFSYKQ-GHPVLSGIN 373
D P +++ E+PHA G + + Y + G VL ++
Sbjct: 1180 DLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLS 1239
Query: 374 LCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVG 433
+ G+ L+G +GSGKST+++ L+R+ + G I+IDG++ +T + R+ +
Sbjct: 1240 FSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIP 1298
Query: 434 QDVFLFSNTVRYNILIGRPMA--TEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLS 491
Q VF+FS T R N+ P ++EE+ ++A+ I P D + + G LS
Sbjct: 1299 QKVFIFSGTFRKNL---DPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLS 1355
Query: 492 GGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTI 551
G KQ + +AR++L IL+LDE ++ LD T ++R+ L + T I+ HR+ +
Sbjct: 1356 NGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEAL 1415
Query: 552 IEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYA 588
+E + IE V + + LL + SL+K+ +
Sbjct: 1416 LECQQFLVIEGSSVKQYDSIQKLLNET--SLFKQAMS 1450
Score = 103 bits (257), Expect = 2e-22
Identities = 63/209 (30%), Positives = 109/209 (52%), Gaps = 17/209 (8%)
Query: 358 VFFSYKQGH--PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI 415
+FFS + PVL I+ + G++ A+ G +GSGKS+++ ++M +PS G I+ G
Sbjct: 429 LFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG- 487
Query: 416 NIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSL 475
RIS+ Q ++ T++ NI+ G E + K+ + I
Sbjct: 488 ------------RISFSPQTSWIMPGTIKDNIIFGLSY-DEYRYTSVIKACQLEEDIALF 534
Query: 476 PQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTE-NLVRQALSR 534
P+ T +GE G LSGGQ+ RI++ARA+ +D + +LD + LD TE + L +
Sbjct: 535 PEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCK 594
Query: 535 LMQGRTTIVIAHRISTIIEADHIIFIEDG 563
LM +T I++ ++ + +AD I+ + +G
Sbjct: 595 LMSNKTRILVTSKLEHLKKADKILLLHEG 623
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking
protein.
Length = 214
Score = 113 bits (285), Expect = 1e-25
Identities = 66/221 (29%), Positives = 107/221 (48%), Gaps = 21/221 (9%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
F +V +Y G L ++L + G+ L GPSG+GK+T++ LL PS G + I G
Sbjct: 4 FHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAG 63
Query: 415 INI---RDITFSSLRERISYVGQDVFLFSN-TVRYNI-----LIGRPMATEEEMIEIAKS 465
++ R LR RI V QD L + TV N+ + G+ E I+
Sbjct: 64 EDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKK----EREIQRRVG 119
Query: 466 ANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTE 525
A + L D + + LSGG++QR+AIARA++ +L+ DE T LD
Sbjct: 120 AALR--QVGLEHKADAFPEQ----LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS 173
Query: 526 NLVRQALSRLMQGRTTIVIAHRISTIIEADH--IIFIEDGK 564
+ L RL + TT+++A ++++ +I ++DG+
Sbjct: 174 ERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 113 bits (284), Expect = 1e-25
Identities = 75/233 (32%), Positives = 123/233 (52%), Gaps = 27/233 (11%)
Query: 356 RDVFFSYKQGH---PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI 412
+D+ SY G VL GI+L +G+M A+VG SGSGKST++N+L + P+SG+ +
Sbjct: 8 KDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRV 67
Query: 413 DGINIRDITFSSL-RERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEI--------- 462
G ++ + +L + R + G F+F RY++L T + +E+
Sbjct: 68 AGQDVATLDADALAQLRREHFG---FIFQ---RYHLL---SHLTAAQNVEVPAVYAGLER 118
Query: 463 -AKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD 521
+ A + + L G + V S LSGGQ+QR++IARA++ G +++ DE T ALD
Sbjct: 119 KQRLLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176
Query: 522 THTENLVRQALSRLM-QGRTTIVIAHRISTIIEADHIIFIEDGK-VSESGDQK 572
+H+ V L +L +G T I++ H +A+ +I I DG+ V Q+
Sbjct: 177 SHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQE 229
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found.
Length = 213
Score = 113 bits (284), Expect = 2e-25
Identities = 66/212 (31%), Positives = 115/212 (54%), Gaps = 31/212 (14%)
Query: 373 NLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYV 432
+L G++ A++GPSG+GKST++NL+ +P+SGSI+++ + + + +S +
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPYQRPVSML 75
Query: 433 GQDVFLFSN-TVRYNILIG-RP-----MATEEEMIEIAKSANAHDFIMSLPQGYDTYVGE 485
Q+ LF++ TVR NI +G P +E++++ A+ D++ LP+
Sbjct: 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-------- 127
Query: 486 NGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM------QGR 539
LSGGQ+QR+A+AR ++R IL+LDE SALD L+R+ + L+ + R
Sbjct: 128 ---QLSGGQRQRVALARCLVRPNPILLLDEPFSALDP----LLREEMLALVKQLCSERQR 180
Query: 540 TTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570
T +++ H +S A I + GK+ D
Sbjct: 181 TLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
Length = 237
Score = 110 bits (277), Expect = 8e-25
Identities = 70/213 (32%), Positives = 109/213 (51%), Gaps = 25/213 (11%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427
L +NL +G + AL+GPSGSGKST++ ++ + P SG I ++G +D T R+
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNG---QDATRVHARD 71
Query: 428 R-ISYVGQDVFLFSN-TVRYNILIG------RPMATEEEMIEIAKSANAHDFIMSLPQGY 479
R I +V Q LF + TVR NI G + + E+ + ++ L
Sbjct: 72 RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLE-------LVQLEGLG 124
Query: 480 DTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ-- 537
D Y + LSGGQ+QR+A+ARA+ + +L+LDE ALD +R L +L
Sbjct: 125 DRY----PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEV 180
Query: 538 GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569
TT+ + H +E AD I+ + +GK+ + G
Sbjct: 181 HVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIG 213
>gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters.
Length = 247
Score = 109 bits (275), Expect = 2e-24
Identities = 70/236 (29%), Positives = 112/236 (47%), Gaps = 25/236 (10%)
Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD-----PSSGSIE 411
++F+ K+ L INL ++TAL+GPSG GKST++ L RM D G +
Sbjct: 8 NLFYGEKE---ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVL 64
Query: 412 IDGINIRD--ITFSSLRERISYVGQDVFLFSNTVRYNILIG------RPMATEEEMIEIA 463
DG +I D I LR R+ V Q F ++ NI G + +E++E +
Sbjct: 65 FDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEES 124
Query: 464 -KSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDT 522
K A +L + ++ LSGGQ+QR+ IARA+ + +L+LDE TSALD
Sbjct: 125 LKKA-------ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDP 177
Query: 523 HTENLVRQALSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQ 577
+ + + L + T +++ H + +D F DG++ E G + +
Sbjct: 178 IATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 109 bits (274), Expect = 2e-24
Identities = 77/229 (33%), Positives = 112/229 (48%), Gaps = 25/229 (10%)
Query: 355 FRDVFFSYKQGH-PVLSGINLCFKSGKMTALVGPSGSGKSTI---INLLMRMYDPSSGSI 410
F+ V F+Y P L+ I+ G TAL+G +GSGKSTI IN L+ D + I
Sbjct: 8 FKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKI 67
Query: 411 EIDGINIRDITFSSLRERISYVGQ--DVFLFSNTVRYNILIG--RPMATEEEMIEIAKSA 466
+DGI + T +RE++ V Q D TV ++ G EMI+I +
Sbjct: 68 TVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDV 127
Query: 467 NAH----DFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDT 522
A D+I S P NLSGGQKQR+AIA + + I++LDE+TS LD
Sbjct: 128 LADVGMLDYIDSEPA-----------NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDP 176
Query: 523 HTENLVRQALSRLMQ--GRTTIVIAHRISTIIEADHIIFIEDGKVSESG 569
+ + + + +L + T I I H I AD ++ ++DGK+ G
Sbjct: 177 AGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQG 225
>gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 107 bits (270), Expect = 7e-24
Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 21/233 (9%)
Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI 415
D+ F YK G L G++L G TAL+GP+G+GKST++ L +Y P G +++ G
Sbjct: 8 EDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGR 67
Query: 416 NIRDITFSSLRERISYVGQDV--FLFSNTVRYNILIG------RPMATEEEMIEIAKSAN 467
+ +R ++ V QD +FS+TV ++ G E + E K+
Sbjct: 68 EVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVR 127
Query: 468 AHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527
DF P +LS GQK+R+AIA + D ++VLDE + LD +
Sbjct: 128 MWDFRDKPPY-----------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQET 176
Query: 528 VRQALSRLMQGRTTIVIA-HRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQK 578
+ + L RL T+++A H + E AD +I +++G+V GD+ L +
Sbjct: 177 LMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDED 229
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature.
Length = 363
Score = 106 bits (267), Expect = 1e-23
Identities = 66/208 (31%), Positives = 107/208 (51%), Gaps = 17/208 (8%)
Query: 372 INLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE---- 427
+L G++ ++G SGSGKST + +L R+ +P++G I IDG NI + LRE
Sbjct: 12 ADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRK 71
Query: 428 RISYVGQDVFLFSN-TVRYNILIGRPMA--TEEEMIEIAKSANAHDFIMSLPQGYDTYVG 484
+I V Q LF + T+ N +G + E+E E A ++ L + Y
Sbjct: 72 KIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLK---LVGLEEYEHRYPD 128
Query: 485 ENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--GRTTI 542
E LSGG +QR+ +ARA+ + IL++DEA SALD + ++ L +L +T +
Sbjct: 129 E----LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIV 184
Query: 543 VIAHRISTIIE-ADHIIFIEDGKVSESG 569
I H + I D I+ ++ G++ + G
Sbjct: 185 FITHDLDEAIRIGDRIVIMKAGEIVQVG 212
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 105 bits (263), Expect = 4e-23
Identities = 75/226 (33%), Positives = 117/226 (51%), Gaps = 21/226 (9%)
Query: 364 QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINI---RDI 420
G VL GI+L K G++ A++GPSGSGK+T++ + + P +G+I + I I R +
Sbjct: 14 HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSL 73
Query: 421 T-----FSSLRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMS 474
+ LR+ + +V Q+ LF + TV NI+ G + E E A +
Sbjct: 74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVG 133
Query: 475 LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSR 534
L +Y LSGGQ+QR+AIARA+ +++ DE TSALD LV + L+
Sbjct: 134 LAGKETSY----PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPE---LVGEVLNT 186
Query: 535 LMQ----GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLL 575
+ Q RT +++ H +S + AD IF++ G++ E G K L
Sbjct: 187 IRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 104 bits (262), Expect = 5e-23
Identities = 75/244 (30%), Positives = 112/244 (45%), Gaps = 34/244 (13%)
Query: 354 VFRDVFFSYKQGHPVLSGINLCFK--SGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIE 411
VF++V F Y Q + ++ F G+ T++VG +GSGKSTI L++ + SG I
Sbjct: 9 VFKNVSFQY-QSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 412 IDGINIRDITFSSLRERISYVGQD---VFLFSNTVRYNILIG--RPMATEEEMIEIAKSA 466
+ I D F LR+ I V Q+ F+ S V+Y++ G +EM A
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS-IVKYDVAFGLENHAVPYDEMHRRVSEA 126
Query: 467 ----NAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDT 522
+ + P LSGGQKQR+AIA + + +++LDEATS LD
Sbjct: 127 LKQVDMLERADYEPN-----------ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDP 175
Query: 523 HTENLVRQALSRLMQ------GRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQ 576
RQ L L++ T I I H +S +EADH+I + G V + G +
Sbjct: 176 DA----RQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231
Query: 577 QKDG 580
+
Sbjct: 232 HAEE 235
>gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 104 bits (260), Expect = 9e-23
Identities = 71/234 (30%), Positives = 115/234 (49%), Gaps = 26/234 (11%)
Query: 359 FFSYKQGHP--VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGIN 416
F KQ + L+ I+ F+ K+ ++G SGSGKST++ + G+I++ I
Sbjct: 30 VFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIY 89
Query: 417 IRDIT----------------FSSLRERISYVGQ--DVFLFSNTVRYNILIGRPMATEEE 458
I D F LR R+S V Q + LF +T+ +I+ G P+A +
Sbjct: 90 IGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFG-PVALGVK 148
Query: 459 MIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATS 518
E K A + M L D+Y+ + LSGGQK+R+AIA + IL+ DE T+
Sbjct: 149 KSEAKKLAKFYLNKMGLD---DSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTA 205
Query: 519 ALDTHTEN-LVRQALSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570
LD E+ +++ L +T VI H + ++E AD +I ++ GK+ ++G
Sbjct: 206 GLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 102 bits (257), Expect = 2e-22
Identities = 70/233 (30%), Positives = 119/233 (51%), Gaps = 22/233 (9%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
F++V + VL I+L G++ ++GPSGSGKST++ + ++ + +SG + +DG
Sbjct: 4 FKNVSKHFGP-TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDG 62
Query: 415 INIRD--ITFSSLRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDF 471
+ + D + +R+ V Q +LF + T N++ G P+ A A
Sbjct: 63 LKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFG-PLRVRG-----ASKEEAEKQ 116
Query: 472 IMSL--PQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVR 529
L G S LSGGQ+QR+AIARA+ +++ DE TSALD +R
Sbjct: 117 ARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE----LR 172
Query: 530 QALSRLMQ-----GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQ 576
+ ++MQ G T +++ H I + A +IFI+ G+++E GD + L++
Sbjct: 173 HEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 102 bits (256), Expect = 3e-22
Identities = 73/241 (30%), Positives = 125/241 (51%), Gaps = 25/241 (10%)
Query: 355 FRDVFFSYKQGHP----VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSI 410
F +V ++Y++G P + +N F+ GK A+VG +GSGKST+I + + P++G++
Sbjct: 5 FDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTV 64
Query: 411 EIDGINI----RDITFSSLRERISYVGQ--DVFLFSNTVRYNILIGRP---MATEEEMIE 461
+D I I +D +R+RI V Q + LF +TV I+ G M +E
Sbjct: 65 TVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDE---- 120
Query: 462 IAKSANAHDFIMSLPQGYDTYVGENGS-NLSGGQKQRIAIARAMLRDGHILVLDEATSAL 520
K+ AH +M L G+ V +SGGQ ++IAI + + I+VLDE T+ L
Sbjct: 121 -VKN-YAHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGL 176
Query: 521 DTHTENLVRQALSRLM--QGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQ 577
D ++ V + L L + +T I+++H ++ + AD +I +++G + K L +
Sbjct: 177 DPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236
Query: 578 K 578
K
Sbjct: 237 K 237
>gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 101 bits (255), Expect = 4e-22
Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 30/228 (13%)
Query: 358 VFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKST---IINLLMRMYDPSSGSIEIDG 414
VF + L+ ++L +G++ ++G SG+GKST INLL R P+SG + +DG
Sbjct: 10 VFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PTSGRVLVDG 66
Query: 415 INIRDITFSSLRERISYVGQDVF-----LFSNTVRYNI-----LIGRPMATEEEMIEIAK 464
++ ++ LR+ +G +F L S TV N+ L G P A EI
Sbjct: 67 QDLTALSEKELRKARRQIGM-IFQHFNLLSSRTVFDNVALPLELAGTPKA------EIKA 119
Query: 465 SANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHT 524
++ L D Y + LSGGQKQR+AIARA+ + +L+ DEATSALD T
Sbjct: 120 RVTELLELVGLSDKADRY----PAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT 175
Query: 525 ENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569
+ + L + + G T ++I H + + D + I+ G++ E G
Sbjct: 176 TRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQG 223
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 102 bits (255), Expect = 4e-22
Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 28/227 (12%)
Query: 357 DVFFSYKQG-HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI 415
+ F Y L ++ G+ A+VG +GSGKST+ LL + P +G+I + G+
Sbjct: 10 HISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGM 69
Query: 416 NIRDITFSSLRERISYVGQ--DVFLFSNTVRYNIL-----IGRPMATEEEMIEIAKSA-- 466
+ + T +R ++ V Q D TV+ ++ IG P EEM+E A
Sbjct: 70 VLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVP---REEMVERVDQALR 126
Query: 467 --NAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHT 524
DF+ P LSGGQKQR+AIA + I++LDEATS LD
Sbjct: 127 QVGMEDFLNREP-----------HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRG 175
Query: 525 ENLVRQALSRL--MQGRTTIVIAHRISTIIEADHIIFIEDGKVSESG 569
V + + +L +G T + I H + +AD +I + G++ E G
Sbjct: 176 RREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEG 222
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter.
Length = 354
Score = 100 bits (251), Expect = 1e-21
Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 15/220 (6%)
Query: 382 TALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRD----ITFSSLRERISYVGQDVF 437
TA+ G SGSGK+T+I L+ + P G I ++G + D I + RI YV Q+
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR 85
Query: 438 LFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQ 496
LF + +VR N+ G A E + + I L G +G LSGG+KQ
Sbjct: 86 LFPHLSVRGNLRYGMKRARPSE-----RRISFERVIELL--GIGHLLGRLPGRLSGGEKQ 138
Query: 497 RIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--GRTTIVIAHRISTIIE- 553
R+AI RA+L +L++DE +ALD + + L RL G + ++H + ++
Sbjct: 139 RVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRL 198
Query: 554 ADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLE 593
AD ++ +EDG+V+ +G + D + L+E
Sbjct: 199 ADRVVVLEDGRVAAAGPIAEVWASPDLPWLAREDQGSLIE 238
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 100 bits (250), Expect = 1e-21
Identities = 67/221 (30%), Positives = 112/221 (50%), Gaps = 20/221 (9%)
Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI 415
R + Y G VL GI+ +G++ AL+G +G+GKST++ ++ + P SG++EI G
Sbjct: 15 RSISKQY-SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGN 73
Query: 416 NIRDITFSSLRER-ISYVGQDVFLFSN-TVRYNILIG--RPMATEEEMIEIAKSANAH-D 470
+T + + I V Q+ LF N +V+ NIL G + A+ ++M ++ + D
Sbjct: 74 PCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD 133
Query: 471 FIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTH-TENLVR 529
S +L +Q + I R ++RD IL+LDE T++L TE L
Sbjct: 134 LDSS------------AGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFS 181
Query: 530 QALSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569
+ L QG + I+H++ I + AD I + DG ++ SG
Sbjct: 182 RIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSG 222
Score = 36.2 bits (84), Expect = 0.023
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 490 LSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRIS 549
LSGG +Q++ IA+ + +L++DE T +D N + Q + + ++ IS
Sbjct: 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLF---IS 460
Query: 550 TIIE-----ADHIIFIEDGKVSES 568
+ +E AD ++ + G++S +
Sbjct: 461 SDLEEIEQMADRVLVMHQGEISGA 484
>gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely.
Length = 353
Score = 99.7 bits (249), Expect = 2e-21
Identities = 70/218 (32%), Positives = 108/218 (49%), Gaps = 31/218 (14%)
Query: 366 HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSL 425
L I+L K G+ L+GPSG GK+T++ ++ + ++G+I G RDIT
Sbjct: 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGG---RDITRLPP 73
Query: 426 RER-ISYVGQDVFLFSN-TVRYNI---LIGRPMATEE------EMIEIAKSANAHDFIMS 474
++R V Q LF N TV NI L R M E E++++ +
Sbjct: 74 QKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDL----------VG 123
Query: 475 LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSR 534
LP Y G+ LSGGQ+QR+A+ARA+ +L+LDE SALD +R + +
Sbjct: 124 LPGSERKYPGQ----LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQ 179
Query: 535 LMQ--GRTTIVIAH-RISTIIEADHIIFIEDGKVSESG 569
L + G TTI++ H + + AD I+ + G + + G
Sbjct: 180 LQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVG 217
>gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 98.7 bits (246), Expect = 3e-21
Identities = 74/237 (31%), Positives = 116/237 (48%), Gaps = 41/237 (17%)
Query: 331 LDHPIMIEES---PHAVNLPVGKGTTV---FRDVFFSYKQGHPVLSGINLCFKSGKMTAL 384
L+ + + A G +TV V SY V++G++ SG+ L
Sbjct: 14 LELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSY-GDKAVVNGLSFTVASGECFGL 72
Query: 385 VGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSN--- 441
+GP+G+GKSTI +++ M P +G I + G+ + + R RI V Q F N
Sbjct: 73 LGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLA-RARIGVVPQ----FDNLDL 127
Query: 442 --TVRYNILI-GR--PMATEE------EMIEIAKSANAHDFIMSLPQGYDTYVGENGSNL 490
TVR N+L+ GR M+T E ++E A+ L D V S+L
Sbjct: 128 EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR----------LESKADARV----SDL 173
Query: 491 SGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL-SRLMQGRTTIVIAH 546
SGG K+R+ +ARA++ D +L+LDE T+ LD H +L+ + L S L +G+T ++ H
Sbjct: 174 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 98.6 bits (246), Expect = 4e-21
Identities = 74/232 (31%), Positives = 115/232 (49%), Gaps = 15/232 (6%)
Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI 415
RD+ +SY G L GIN + G+M AL+GP+G+GKST+ + P+SG + I G
Sbjct: 5 RDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGE 64
Query: 416 NIRDITFSSL---RERISYVGQ--DVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHD 470
I SL R+ + V Q D LF+ TV ++ G P+ E+ K
Sbjct: 65 PI-KYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFG-PLNLGLSKEEVEKRVKE-- 120
Query: 471 FIMSLPQ-GYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVR 529
+L G + + + +LSGGQK+R+AIA + I+VLDE TS LD + +
Sbjct: 121 ---ALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIM 177
Query: 530 QALSRL-MQGRTTIVIAHRISTI-IEADHIIFIEDGKVSESGDQKYLLQQKD 579
+ L L +G T I+ H + + + AD + + DGK+ + G K + +
Sbjct: 178 KLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIE 229
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 98.7 bits (246), Expect = 4e-21
Identities = 69/238 (28%), Positives = 112/238 (47%), Gaps = 31/238 (13%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD-----PSSGSIEIDGINI--RDI 420
+L INL ++TA +GPSG GKST + RM D G ++IDGI++ D
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 421 TFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIM--SLPQG 478
LR ++ V Q F ++ N+ G ++ +AK+ D I+ SL
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYG------PKLHGLAKNKKKLDEIVEKSL--- 130
Query: 479 YDTYVG----------ENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528
T VG ++ LSGGQ+QR+ IARA+ +L++DE SALD N++
Sbjct: 131 --TSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVI 188
Query: 529 RQALSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKDGSLYKK 585
+ L + T IV+ H + + +D + F + G++ E + + + S K+
Sbjct: 189 ENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQSSKTKR 246
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 98.5 bits (246), Expect = 4e-21
Identities = 69/208 (33%), Positives = 108/208 (51%), Gaps = 18/208 (8%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSI-----EIDGINIRDITF 422
VL INL G++ L GPSGSGK+T++ L+ + GS+ E+ G + +++
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELV- 78
Query: 423 SSLRERISYVGQDVFLF-SNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDT 481
LR I Y+ Q L T R N+ + + E + A A M G
Sbjct: 79 -QLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARA----MLEAVGLGD 133
Query: 482 YVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM--QGR 539
++ NLSGGQKQR+AIARA++ +++ DE T+ALD+ + V + + +L QG
Sbjct: 134 HLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGC 193
Query: 540 TTIVIAH--RISTIIEADHIIFIEDGKV 565
T +++ H RI + AD I+ +EDGK+
Sbjct: 194 TILIVTHDNRILDV--ADRIVHMEDGKL 219
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 98.3 bits (245), Expect = 5e-21
Identities = 60/221 (27%), Positives = 112/221 (50%), Gaps = 18/221 (8%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424
G ++ G+++ G +T L+GP+GSGKST++ LL P +G++++ G+++ ++ +
Sbjct: 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRA 72
Query: 425 LRERISYVGQDVFLFSN-TVRYNILIGR-P----MATE-EEMIEIAKSANAHDFIMSLP- 476
R++ V QD TVR + +GR P A + + A A + L
Sbjct: 73 RARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLAD 132
Query: 477 QGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM 536
+ T LSGG++QR+ +ARA+ ++ +L+LDE T+ LD + + L
Sbjct: 133 RDMST--------LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELA 184
Query: 537 QGRTTIVIA-HRISTIIE-ADHIIFIEDGKVSESGDQKYLL 575
T+V A H ++ DH++ ++ G+V +G + +L
Sbjct: 185 ATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 97.5 bits (243), Expect = 8e-21
Identities = 75/242 (30%), Positives = 121/242 (50%), Gaps = 26/242 (10%)
Query: 355 FRDVFFSYKQGHP----VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSI 410
++V ++Y+ G P L +NL + G TA +G +GSGKSTI+ LL ++ P+ GS+
Sbjct: 5 LQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSV 64
Query: 411 EIDGINI------RDITFSSLRERISYVGQ--DVFLFSNTVRYNILIGRPM---ATEEEM 459
+D I +DI +R+++ V Q + LF TV ++ G P ++EE
Sbjct: 65 RVDDTLITSTSKNKDI--KQIRKKVGLVFQFPESQLFEETVLKDVAFG-PQNFGVSQEEA 121
Query: 460 IEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSA 519
+A+ ++L ++ +N LSGGQ +R+AIA + + ILVLDE T+
Sbjct: 122 EALAREK------LALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAG 175
Query: 520 LDTHTENLVRQALSRLMQGRTTIV-IAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQ 577
LD + +L Q TIV + H + + AD + +E GK+ SG K + Q
Sbjct: 176 LDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235
Query: 578 KD 579
D
Sbjct: 236 VD 237
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 97.0 bits (241), Expect = 1e-20
Identities = 74/234 (31%), Positives = 119/234 (50%), Gaps = 31/234 (13%)
Query: 366 HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI----- 420
H VL G++L +G + +++G SGSGKST + + + PS GSI ++G I +
Sbjct: 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDG 77
Query: 421 --------TFSSLRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDF 471
LR R++ V Q L+S+ TV N+ M +++ ++K
Sbjct: 78 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV-----MEAPIQVLGLSKQEARERA 132
Query: 472 IMSLPQ-GYDTYV-GENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVR 529
+ L + G D G+ +LSGGQ+QR++IARA+ + +L+ DE TSALD LV
Sbjct: 133 VKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE---LVG 189
Query: 530 QALSRLMQ-----GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQ 577
+ L R+MQ G+T +V+ H + + H+IF+ GK+ E G + L
Sbjct: 190 EVL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN 242
>gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein.
Length = 617
Score = 97.0 bits (242), Expect = 1e-20
Identities = 65/216 (30%), Positives = 109/216 (50%), Gaps = 22/216 (10%)
Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG---INIRDITFSSL 425
L ++ K G++ A++G SG+GK+T++N L S ++ G +N I +
Sbjct: 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFR---SPKGVKGSGSVLLNGMPIDAKEM 97
Query: 426 RERISYVGQ-DVFLFSNTVRYNILI------GRPMATEEEMIEIAKSANAHDFIMSLPQG 478
R +YV Q D+F+ + TVR +++ R + +E+ + + A + L +
Sbjct: 98 RAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQA----LGLRKC 153
Query: 479 YDTYVGENGS--NLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM 536
+T +G G LSGG+++R+A A +L D +L DE TS LD+ V Q L L
Sbjct: 154 ANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA 213
Query: 537 Q-GRTTIVIAHR-ISTIIEA-DHIIFIEDGKVSESG 569
Q G+T I H+ S + E D II + +G+V+ G
Sbjct: 214 QKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLG 249
>gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 96.3 bits (240), Expect = 2e-20
Identities = 72/224 (32%), Positives = 117/224 (52%), Gaps = 20/224 (8%)
Query: 360 FSYKQGHP----VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI 415
Y +G P L +N+ + G+ L+G +GSGKST+I L + P+SG I IDG+
Sbjct: 10 HIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGV 69
Query: 416 NIRD--ITFSSLRERISYVGQ--DVFLFSNTVRYNILIG-RPMATEEEMIE--IAKSANA 468
+I D + S +R+++ V Q + LF T+ +I G + EE IE + ++ N
Sbjct: 70 DITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMN- 128
Query: 469 HDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528
I+ L Y+ Y ++ LSGGQK+R+AIA + + IL+LDE T+ LD + +
Sbjct: 129 ---IVGLD--YEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEI 183
Query: 529 RQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569
+ L + T I+++H + + + AD II + GK G
Sbjct: 184 LNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQG 227
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 95.5 bits (238), Expect = 3e-20
Identities = 76/261 (29%), Positives = 118/261 (45%), Gaps = 35/261 (13%)
Query: 331 LDHPIMIEESPHAVNLPVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGS 390
+M +NL + R++ Y L I++ ++TA +GPSG
Sbjct: 4 HGITLMALPLLDVLNLSDEQTALEVRNLNLFYGDKQ-ALFDISMRIPKNRVTAFIGPSGC 62
Query: 391 GKSTIINLLMRMYD-----PSSGSIEIDGINIRD--ITFSSLRERISYVGQDVFLFSNTV 443
GKST++ RM D G I +DG NI D + + LR R+ V Q F ++
Sbjct: 63 GKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSI 122
Query: 444 RYNILIG------RPMATEEEMIEIA-KSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQ 496
N++ G +E +E + + A D + + EN LSGGQ+Q
Sbjct: 123 YENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGGQQQ 175
Query: 497 RIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVI-------AHRIS 549
R+ IARA+ + +L+LDE TSALD + + + ++ L + TIVI A R+S
Sbjct: 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVS 234
Query: 550 TIIEADHIIFIEDGKVSESGD 570
D+ F+ GK+ E GD
Sbjct: 235 -----DYTAFMYMGKLVEYGD 250
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux.
Length = 190
Score = 95.6 bits (238), Expect = 3e-20
Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 15/191 (7%)
Query: 362 YKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINI---- 417
Y G VL G+N + G++ AL+G +G+GKST++ L + P SG++ IDG +
Sbjct: 1 YPGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR 60
Query: 418 RDITFSSLRERISYVGQDV--FLFSNTVRYNILIG-RPMATEEEMIEIAKSANAHDFIMS 474
+ + R+R+ V QD LF+ V ++ G + E +E + A +
Sbjct: 61 KGLL--ERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVE-RRVREALTAV-- 115
Query: 475 LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSR 534
G LSGG+K+R+AIA A+ +L+LDE T+ LD + L R
Sbjct: 116 ---GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRR 172
Query: 535 LMQGRTTIVIA 545
L T+VI+
Sbjct: 173 LRAEGMTVVIS 183
>gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 94.6 bits (236), Expect = 7e-20
Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 24/195 (12%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424
G + SG++ +G+ L GP+GSGK+T++ L+ + P++G+I++DG DI
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDG---GDIDDPD 70
Query: 425 LRERISYVG-QDVFLFSNTVRYNILIGRPM-ATEEEMIEIAKSANAHDFIMSLPQGYDTY 482
+ E Y+G ++ + TV N+ EE I A A + LP GY
Sbjct: 71 VAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGY--- 127
Query: 483 VGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTI 542
LS GQK+R+A+AR ++ + I +LDE T+ALD L + L++
Sbjct: 128 -------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVAL----FAELIRAH--- 173
Query: 543 VIAHRISTIIEADHI 557
+ +I A HI
Sbjct: 174 --LAQGGIVIAATHI 186
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 94.6 bits (235), Expect = 7e-20
Identities = 71/230 (30%), Positives = 120/230 (52%), Gaps = 12/230 (5%)
Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSL--- 425
L+ ++L +G++ ++G SG+GKST+I + + P+SGS+ +DG ++ ++ S L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 426 RERISYVGQDV-FLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVG 484
R +I + Q L S TV N+ + + + EI + ++ L +D+Y
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-EIKRKVTELLALVGLGDKHDSY-- 137
Query: 485 ENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--GRTTI 542
SNLSGGQKQR+AIARA+ + +L+ DEATSALD T + + L + + G T +
Sbjct: 138 --PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTIL 195
Query: 543 VIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQL 591
+I H + + D + I +G++ E G + L +K S L
Sbjct: 196 LITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFIRSTL 245
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake.
Length = 555
Score = 94.3 bits (234), Expect = 8e-20
Identities = 110/514 (21%), Positives = 193/514 (37%), Gaps = 55/514 (10%)
Query: 81 GIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHAT 140
G+ ++ + + + + AG IIA + + ++L +E D + L TH
Sbjct: 61 GLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDI 120
Query: 141 QSVRSVVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRI-LVKRVRH 199
+ + + IF + + + + +L P ++ I I+G L+ +
Sbjct: 121 DQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAI----IIGTAAQLLAFMGG 176
Query: 200 IMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCNM------IKEVEDRLNKVA 253
+ A E I +F +E+ + + I+E + + +
Sbjct: 177 F--KFFHAARDEEDAFNEHTHAI----AFGAKELKIHGIRRLSFAHGAIQESANNIADLH 230
Query: 254 KIESATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIART 313
IE E L +I + F + + +A I +F+ ALL P + +
Sbjct: 231 IIEILIFIAAENFGQLLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSA 290
Query: 314 RIILEGGMVGVRCMFSLLD-----HPIMIEESPHAVNLPVGK---GTTVFRDVFFSYK-- 363
IL + + + + P + V L + +DV + K
Sbjct: 291 LPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAP 350
Query: 364 QGHP--VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT 421
+G L I+L G + +VG +G GKST+ L +Y P G I +DG + +
Sbjct: 351 EGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADS 410
Query: 422 FSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDT 481
R+ S + D LF + LIG E A NA ++ L
Sbjct: 411 RDDYRDLFSAIFADFHLF------DDLIGPDEG------EHASLDNAQQYLQRLEIADKV 458
Query: 482 YVGENG----SNLSGGQKQRIAIARAMLRDGHILVLDEATSALDT------HTENLVRQA 531
+ + G + LS GQ++R+A+ A L D IL+ DE + D + E L
Sbjct: 459 KIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELL--PD 516
Query: 532 LSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKV 565
L R QG+T I+I+H AD II + G +
Sbjct: 517 LKR--QGKTIIIISHDDQYFELADQIIKLAAGCI 548
>gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP)
Family protein.
Length = 216
Score = 94.0 bits (234), Expect = 1e-19
Identities = 65/216 (30%), Positives = 97/216 (44%), Gaps = 34/216 (15%)
Query: 355 FRDVFFSYKQGH-PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEID 413
F V +Y GH P L +N G+M LVG SG+GKST + L++ + P+ G I +
Sbjct: 4 FEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFN 63
Query: 414 GINI-----RDITFSSLRERISYVGQDVFLFSNTVRYN------ILIGRPMATEEEMIEI 462
G ++ R+I F LR I V QD L S+ Y+ +IG P E +
Sbjct: 64 GQDLTRLRGREIPF--LRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSA 121
Query: 463 A-----KSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEAT 517
A AH M LSGG++QR+AIARA++ +L+ DE T
Sbjct: 122 ALEKVGLEGKAHALPMQ---------------LSGGEQQRVAIARAIVHKPPLLLADEPT 166
Query: 518 SALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIE 553
LD + + + TT+++A ++E
Sbjct: 167 GNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVE 202
>gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 93.2 bits (232), Expect = 2e-19
Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 27/244 (11%)
Query: 354 VFRDVFFSYKQGHP----VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGS 409
F+ V Y+ P L +N+ SG A++G +GSGKST++ L + P+SG+
Sbjct: 4 TFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGT 63
Query: 410 IEIDGINI----RDITFSSLRERISYVGQDVF----LFSNTVRYNILIGRPM---ATEEE 458
+ I I ++ LR+++ V Q F LF TV +I G PM +EE+
Sbjct: 64 VTIGERVITAGKKNKKLKPLRKKVGIVFQ--FPEHQLFEETVEKDICFG-PMNFGVSEED 120
Query: 459 MIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATS 518
+ A+ ++ LP+ + + LSGGQ +R+AIA + + +LVLDE T+
Sbjct: 121 AKQKAREMIE---LVGLPE---ELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTA 174
Query: 519 ALDTHTENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLL 575
LD + + +L + G TT+++ H + AD I+ + G V G + +
Sbjct: 175 GLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIF 234
Query: 576 QQKD 579
D
Sbjct: 235 ADPD 238
>gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 92.9 bits (231), Expect = 2e-19
Identities = 70/231 (30%), Positives = 113/231 (48%), Gaps = 37/231 (16%)
Query: 358 VFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDP-----SSGSIEI 412
V++ K+ + GI++ F+ K+TAL+GPSGSGKST + L RM D +G I
Sbjct: 28 VYYGKKEA---IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILY 84
Query: 413 DGINI--RDITFSSLRERISYVGQDVFLFSNTVRYNILIG---RPMATEEEMIEIAKSAN 467
GI+I ++I +R+ I V Q F+ ++ NI + ++ + EI ++
Sbjct: 85 RGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVET-- 142
Query: 468 AHDFIMSLPQG--YDTY---VGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDT 522
SL Q +D + ++ LSGGQ+QR+ IARA+ IL++DE SALD
Sbjct: 143 ------SLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDP 196
Query: 523 HTENLVRQALSRLMQGRTTIVIAH------RISTIIEADHIIFIEDGKVSE 567
+ + + + L + T I++ H R S D+ F G + E
Sbjct: 197 ISTMQLEETMFELKKNYTIIIVTHNMQQAARAS-----DYTAFFYLGDLIE 242
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 92.8 bits (231), Expect = 2e-19
Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 34/221 (15%)
Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLR 426
+L+ ++L +GK+TAL+GP+G GKST++ R+ P SG++ + I ++ L
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75
Query: 427 ERISYVGQDVFLFSN--TVR---------YNILIGRPMATEEEMIEIAKSANAHDFIMSL 475
R++ + Q L TVR + L GR A + + A
Sbjct: 76 RRLALLPQ-HHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT-------- 126
Query: 476 PQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQA-LSR 534
+ ++LSGGQ+QR +A + +D +++LDE T+ LD + Q L R
Sbjct: 127 --RINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD-----INHQVELMR 179
Query: 535 LM-----QGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569
LM QG+T + + H ++ DH++ + +G V G
Sbjct: 180 LMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQG 220
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 92.4 bits (230), Expect = 2e-19
Identities = 76/239 (31%), Positives = 119/239 (49%), Gaps = 45/239 (18%)
Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD--PS---SGSIE 411
D+F+ Q L INL + ++TAL+GPSG GKST + L RM D PS G +
Sbjct: 10 DLFYGDFQA---LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVL 66
Query: 412 IDGINI--RDITFSSLRERISYVGQDVFLFSNTVRYNILIG---RPMATEEEMIEIAKSA 466
+DG +I DI + LR+R+ V Q F ++ N+ G + ++++ EI +
Sbjct: 67 LDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEK- 125
Query: 467 NAHDFIMSLPQG--YDTY---VGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD 521
SL +D + ++ LSGGQ+QR+ IARA+ + +L++DE TSALD
Sbjct: 126 -------SLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178
Query: 522 ----THTENLVRQALSRLMQGRTTIVIAH------RISTIIEADHIIFIEDGKVSESGD 570
E L+++ L + T +++ H RIS D F +G++ E GD
Sbjct: 179 PISTLKIEELIQE----LKKDYTIVIVTHNMQQASRIS-----DKTAFFLNGEIVEFGD 228
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 92.5 bits (230), Expect = 3e-19
Identities = 69/227 (30%), Positives = 104/227 (45%), Gaps = 21/227 (9%)
Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD-----PSSGSIE 411
F+ Q L I+L F+ ++TAL+GPSG GKST + L RM D G I
Sbjct: 13 SFFYGDFQA---LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEIL 69
Query: 412 IDGINIRD--ITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAH 469
+DG NI D + LR R+ V Q F ++ N+ G + ++ +A+
Sbjct: 70 LDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERS 129
Query: 470 DFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVR 529
+L + E+ LSGGQ+QR+ IARA+ + +L++DE SALD +
Sbjct: 130 LRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIE 189
Query: 530 QALSRLMQGRTTIVIAH------RISTIIEADHIIFIEDGKVSESGD 570
+ + L T I++ H R+S D F GK+ E G
Sbjct: 190 ELIHELKARYTIIIVTHNMQQAARVS-----DVTAFFYMGKLIEVGP 231
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 92.4 bits (229), Expect = 3e-19
Identities = 69/222 (31%), Positives = 110/222 (49%), Gaps = 9/222 (4%)
Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD-----PSSGSI 410
+DV SY + L GI+L F+ ++TAL+GPSG GKST + L RM D +G I
Sbjct: 8 KDVHLSYGN-YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEI 66
Query: 411 EIDGINI--RDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANA 468
+ +G NI + LR+ + V Q F +V N+ G +A ++ I +
Sbjct: 67 KFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEE 126
Query: 469 HDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528
++ + + N SGGQ+QRI IARA+ +++LDE TSALD + + +
Sbjct: 127 SLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEI 186
Query: 529 RQALSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569
+ L L T I++ H + +D F+ +G + E+G
Sbjct: 187 EETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAG 228
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 92.3 bits (229), Expect = 3e-19
Identities = 63/218 (28%), Positives = 108/218 (49%), Gaps = 22/218 (10%)
Query: 380 KMTALVGPSGSGKSTIINLLMRMYD--PS---SGSIEIDGINIRD--ITFSSLRERISYV 432
++TA++GPSG GK+T++ + RM D P G I G +I D + + R+++ V
Sbjct: 30 QITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMV 89
Query: 433 GQDVFLFSNTVRYNILIG-------RPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGE 485
Q F ++ N+ G + + E K A D + S + +
Sbjct: 90 FQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNK 142
Query: 486 NGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIA 545
G+ LSGGQ+QR+ IARA+ + +++LDE TSALD + + L L + T +++
Sbjct: 143 PGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVT 202
Query: 546 HRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKDGSL 582
H I I AD+I F+ G++ E G + ++++ L
Sbjct: 203 HNIGQAIRIADYIAFMYRGELIEYGPTREIVERPKNKL 240
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 92.1 bits (229), Expect = 4e-19
Identities = 73/223 (32%), Positives = 115/223 (51%), Gaps = 29/223 (13%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427
V+ +NL K G M L+GPSG GK+T++ L+ + P+ G I IDG D+T S+++
Sbjct: 21 VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDG---EDVTHRSIQQ 77
Query: 428 R-ISYVGQDVFLF-----SNTVRYNI-LIGRPMATEEEMIEIAKSANAHDFIMSLPQGYD 480
R I V Q LF V Y + ++G P +EE + K A ++ L D
Sbjct: 78 RDICMVFQSYALFPHMSLGENVGYGLKMLGVP---KEERKQRVKEALE---LVDLAGFED 131
Query: 481 TYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--G 538
YV + +SGGQ+QR+A+ARA++ +L+ DE S LD + +R+ + L Q
Sbjct: 132 RYVDQ----ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFN 187
Query: 539 RTTIVIAHRISTIIEA----DHIIFIEDGKVSESGDQKYLLQQ 577
T++ + H S EA D +I + GK+ + G + L +Q
Sbjct: 188 ITSLYVTHDQS---EAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 91.6 bits (228), Expect = 5e-19
Identities = 70/216 (32%), Positives = 114/216 (52%), Gaps = 23/216 (10%)
Query: 373 NLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYV 432
+L + G+ A++GPSG+GKST++NL+ P+SGS+ ++G + S R +S +
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSML 76
Query: 433 GQDVFLFSN-TVRYNILIG-RP-----MATEEEMIEIAKSANAHDFIMSLPQGYDTYVGE 485
Q+ LFS+ TV NI +G P A E++ IA+ D + LP
Sbjct: 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP--------- 127
Query: 486 NGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGR--TTIV 543
LSGGQ+QR+A+AR ++R+ IL+LDE SALD + +S++ Q R T ++
Sbjct: 128 --GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLM 185
Query: 544 IAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQK 578
++H + A + + DG+++ G LL K
Sbjct: 186 VSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 91.6 bits (228), Expect = 5e-19
Identities = 61/224 (27%), Positives = 104/224 (46%), Gaps = 33/224 (14%)
Query: 366 HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG--------INI 417
H L I L G+ L+GPSG+GKS+++ +L + P SG++ I G +
Sbjct: 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSD 74
Query: 418 RDITFSSLRERISYVGQDVFLFSN-TVRYNILIGRPM--------ATEEEMIEIAKSANA 468
+ I LR + V Q L+ + TV+ N LI P ++ +
Sbjct: 75 KAI--RELRRNVGMVFQQYNLWPHLTVQQN-LIEAPCRVLGLSKDQALARAEKLLERLRL 131
Query: 469 HDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528
+ P +LSGGQ+QR+AIARA++ + +L+ DE T+ALD +
Sbjct: 132 KPYADRFPL-----------HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI 180
Query: 529 RQALSRLMQ-GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570
+ L + G T +++ H + + A ++++E+G + E GD
Sbjct: 181 VSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 91.3 bits (227), Expect = 6e-19
Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 41/223 (18%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427
VL+ I+L SG+M AL+GPSGSGK+T++ ++ + +SG I G D++ R+
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHG---TDVSRLHARD 73
Query: 428 R-ISYVGQDVFLFSN-TVRYNILIG--------RPMATE--------EEMIEIAKSANAH 469
R + +V Q LF + TV NI G RP A EM+++A A+ +
Sbjct: 74 RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY 133
Query: 470 DFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVR 529
+ LSGGQKQR+A+ARA+ + IL+LDE ALD +R
Sbjct: 134 P-----------------AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELR 176
Query: 530 QALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569
+ L +L + T++ + H +E AD ++ + G + ++G
Sbjct: 177 RWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAG 219
>gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 91.4 bits (228), Expect = 6e-19
Identities = 61/223 (27%), Positives = 103/223 (46%), Gaps = 22/223 (9%)
Query: 361 SYKQGH-PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRD 419
S + G +L ++L + G++ A++GP+G+GKST++ L P SG + ++G + D
Sbjct: 9 SVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLAD 68
Query: 420 ITFSSLRERISYVGQDVFL-FSNTVRYNILIGR-PMATEEEMIEIAKSANAHDFIMSLPQ 477
+ + L R + + Q L F TV + +GR P A+ ++
Sbjct: 69 WSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSR-----AEDDALVAAALAQ-V 122
Query: 478 GYDTYVGENGSNLSGGQKQRIAIARAMLR------DGHILVLDEATSALDT----HTENL 527
G + LSGG++QR+ +AR + + L+LDE TSALD H L
Sbjct: 123 DLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRL 182
Query: 528 VRQALSRLMQGRTTIVIAHRIS-TIIEADHIIFIEDGKVSESG 569
RQ +G IV+ H ++ AD I+ + G++ G
Sbjct: 183 ARQLAHE--RGLAVIVVLHDLNLAARYADRIVLLHQGRLVADG 223
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 90.9 bits (226), Expect = 7e-19
Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 12/198 (6%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424
+L+ I+ ++G+ + GPSG GKST++ ++ + P+SG++ +G +I +
Sbjct: 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI 78
Query: 425 LRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIM--SLPQGYDTY 482
R+++SY Q LF +TV N++ P + + A D + +LP DT
Sbjct: 79 YRQQVSYCAQTPTLFGDTVYDNLIF--PWQIRNQQPDPAIFL---DDLERFALP---DTI 130
Query: 483 VGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTI 542
+ +N + LSGG+KQRI++ R + +L+LDE TSALD ++ V + + R ++ +
Sbjct: 131 LTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIA 190
Query: 543 VI--AHRISTIIEADHII 558
V+ H I AD +I
Sbjct: 191 VLWVTHDKDEINHADKVI 208
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
Length = 265
Score = 90.6 bits (225), Expect = 9e-19
Identities = 66/228 (28%), Positives = 106/228 (46%), Gaps = 16/228 (7%)
Query: 359 FFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIR 418
F KQ PVL+ ++L + G+ L+G SG GKST+ LL+ + P+ G++ G ++
Sbjct: 17 LFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLY 76
Query: 419 DITFSS---LRERISYVGQDVFLFSN---TVRYNILIGRPMATEEEMIEIAKSANAHDFI 472
+ R + V QD N TVR +IG P+ + E + A + +
Sbjct: 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQ--IIGEPLRHLTSLDESEQKARIAELL 134
Query: 473 --MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQ 530
+ L + LSGGQ QRI IARA+ ++VLDEA S LD + ++ +
Sbjct: 135 DMVGLR---SEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE 191
Query: 531 ALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLL 575
L +L Q G + I H + + + ++ G++ E D LL
Sbjct: 192 LLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLL 239
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 90.5 bits (225), Expect = 1e-18
Identities = 72/234 (30%), Positives = 114/234 (48%), Gaps = 31/234 (13%)
Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD--P---SSGSI 410
R++ F Y + H L INL ++TA +GPSG GKST++ RMY+ P + G I
Sbjct: 17 RNLNFYYGKFH-ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI 75
Query: 411 EIDGINI--RDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPM------ATEEEMIEI 462
+DG NI + LR ++ V Q F ++ NI G + A +E +E
Sbjct: 76 LLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEW 135
Query: 463 AKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDT 522
A + A L + ++G +LSGGQ+QR+ IAR + +L+LDE SALD
Sbjct: 136 ALTKAA------LWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDP 189
Query: 523 HTENLVRQALSRLMQGRTTIVIAH------RISTIIEADHIIFIEDGKVSESGD 570
+ + + ++ L Q T +++ H R S D+ F+ G++ E G+
Sbjct: 190 ISTGRIEELITELKQDYTVVIVTHNMQQAARCS-----DYTAFMYLGELIEFGN 238
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 90.1 bits (223), Expect = 2e-18
Identities = 68/229 (29%), Positives = 113/229 (49%), Gaps = 16/229 (6%)
Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSS---GSIEID 413
++F+ KQ L IN+ + K+TAL+G SG GKST + RM D + G +EI+
Sbjct: 9 NLFYGKKQA---LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIE 65
Query: 414 GINIRDITFSSLRERISYVGQDVFLFSNTVRYNI-----LIGRPMATEEEMIEIAKSANA 468
G ++++ +LR+ + V Q +F ++ NI L G +EE +
Sbjct: 66 GKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQK 125
Query: 469 HDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528
+ L + + +N LSGGQ+QR+ IARA+ +L+LDE TSALD + ++
Sbjct: 126 ----VGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVI 181
Query: 529 RQALSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQ 576
+ L L + I++ H + AD+ F G++ E G+ K +
Sbjct: 182 EELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 89.9 bits (223), Expect = 2e-18
Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 33/229 (14%)
Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSS-----GSIEIDGINIRD--IT 421
L G+++ +TAL+GPSG GKST + L RM D GS+E+DG +I +
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 422 FSSLRERISYVGQDVFLFSNTVRYNI-----------------LIGRP-MATEEEMIEIA 463
LR+R+ V Q F ++R NI L+GR E+E++E +
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERS 180
Query: 464 KSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTH 523
A L + + +N LSGGQ+QR+ IAR + D ++++DE SALD
Sbjct: 181 LRQAA------LWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPI 234
Query: 524 TENLVRQALSRLMQGRTTIVIAHRI--STIIEADHIIFIEDGKVSESGD 570
+ + + L + T +V+ H + + I +F+ G++ E D
Sbjct: 235 ATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDD 283
>gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification.
Length = 236
Score = 89.7 bits (223), Expect = 2e-18
Identities = 60/251 (23%), Positives = 107/251 (42%), Gaps = 36/251 (14%)
Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI 415
+ F+Y L ++ + G+ AL+GP+G+GKST+ +LL R+Y G I + G
Sbjct: 5 AGLSFAYGA-RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGH 63
Query: 416 NIRDITFSSLRERISYVGQ----DVFLFSNTVRYNIL-------IGRPMA---TEEEMIE 461
++R ++L R+ V Q D+ L +VR N+ + R A +
Sbjct: 64 DLRRAPRAALA-RLGVVFQQPTLDLDL---SVRQNLRYHAALHGLSRAEARERIAALLAR 119
Query: 462 IAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD 521
+ + A D + L+GG ++R+ IARA+L +L+LDE T LD
Sbjct: 120 LGLAERADDKVRE---------------LNGGHRRRVEIARALLHRPALLLLDEPTVGLD 164
Query: 522 THTENLVRQALSRLMQGRTTIVI--AHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKD 579
+ + + L + + V+ H + I D ++ + G+V G L
Sbjct: 165 PASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGALG 224
Query: 580 GSLYKKMYASQ 590
G+ + +
Sbjct: 225 GADLEAAFLRL 235
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 89.4 bits (222), Expect = 2e-18
Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 27/195 (13%)
Query: 364 QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFS 423
G P L INL +SG++ ++GPSG GK+T++NL+ GSI +DG +
Sbjct: 12 GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPG-- 69
Query: 424 SLRERISYVGQDVFLFSNTVRYNILIGRPMA--TEEEMIEIAKSANAHDFIMSLPQGYDT 481
ER + L V+ N+ G +A + + +EIA
Sbjct: 70 --AERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKK------------ 115
Query: 482 YVGENGS------NLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRL 535
VG G+ LSGGQ+QR+ IARA+ + +L+LDE ALD T ++ L +L
Sbjct: 116 -VGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKL 174
Query: 536 MQ--GRTTIVIAHRI 548
Q G+ ++I H I
Sbjct: 175 WQETGKQVLLITHDI 189
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 89.4 bits (222), Expect = 2e-18
Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 38/248 (15%)
Query: 356 RDVFFSYKQGHP----VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIE 411
+++ + + P L +++ G+ A++G +GSGK+T I L + P +G+IE
Sbjct: 6 KNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIE 65
Query: 412 I------------------DGINIRDITF------SSLRERISYVGQ--DVFLFSNTVRY 445
+ + I+ F +R R+ V Q + LF T+
Sbjct: 66 WIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEK 125
Query: 446 NILIG-RPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAM 504
+I+ G M +E E K A + ++ L + +Y+ + LSGGQK+R+A+A +
Sbjct: 126 DIIFGPVSMGVSKE--EAKKRAAKYIELVGLDE---SYLQRSPFELSGGQKRRVALAGIL 180
Query: 505 LRDGHILVLDEATSALDTHTENLVRQALSRL-MQGRTTIVIAHRISTIIE-ADHIIFIED 562
+ LV DE T+ LD + + L QG+T I++ H + ++E IF +D
Sbjct: 181 AMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240
Query: 563 GKVSESGD 570
GK+ + GD
Sbjct: 241 GKIIKDGD 248
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 89.3 bits (221), Expect = 3e-18
Identities = 71/232 (30%), Positives = 113/232 (48%), Gaps = 27/232 (11%)
Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGIN 416
+V +SY G P L INL K G+ ++G +GSGKST+ L + P G + + GI+
Sbjct: 6 NVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGID 65
Query: 417 IRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEM-----------IEIAKS 465
D FS L+ VG +F N +GR EE++ IEI K
Sbjct: 66 TGD--FSKLQGIRKLVG---IVFQNP--ETQFVGR--TVEEDLAFGPENLCLPPIEIRKR 116
Query: 466 ANAHDFIMSLPQ-GYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHT 524
+ +L + G + Y + LSGGQ Q +A+A + + L+ DE TS LD +
Sbjct: 117 VD-----RALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDS 171
Query: 525 ENLVRQALSRLMQ-GRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLL 575
V + + +L + G+T + I H + + +AD II ++ GK+ G+ + +L
Sbjct: 172 GIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVL 223
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 88.9 bits (220), Expect = 3e-18
Identities = 67/212 (31%), Positives = 110/212 (51%), Gaps = 15/212 (7%)
Query: 373 NLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE----R 428
+L + G++ ++G SGSGKST++ LL R+ +P+ G + IDG++I I+ + LRE +
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 429 ISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQ-GYDTYVGEN 486
I+ V Q L + TV N G E+ I + +L Q G + Y
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGM------ELAGINAEERREKALDALRQVGLENYAHSY 161
Query: 487 GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM--QGRTTIVI 544
LSGG +QR+ +ARA+ + IL++DEA SALD ++ L +L RT + I
Sbjct: 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFI 221
Query: 545 AHRISTIIE-ADHIIFIEDGKVSESGDQKYLL 575
+H + + D I +++G+V + G +L
Sbjct: 222 SHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
>gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 88.7 bits (220), Expect = 4e-18
Identities = 60/219 (27%), Positives = 109/219 (49%), Gaps = 30/219 (13%)
Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLR 426
VL G++L + G + LVGP+G+GK+T++ + P++G++ + G ++ ++ +
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76
Query: 427 ERISYVGQDVFL-FSNTVRYNILIGR--------PM-ATEEEMIEIAKSANAHDFIMSLP 476
R++ V QD L F VR + +GR T+ +E A
Sbjct: 77 RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERT--------- 127
Query: 477 QGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTH----TENLVRQAL 532
G + ++LSGG++QR+ +ARA+ + +L+LDE T++LD + T LVR
Sbjct: 128 -GVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVR--- 183
Query: 533 SRLMQ-GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569
RL+ G+T + H + D ++ + DG+V +G
Sbjct: 184 -RLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 88.1 bits (218), Expect = 6e-18
Identities = 69/224 (30%), Positives = 107/224 (47%), Gaps = 22/224 (9%)
Query: 362 YKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGS-------IEIDG 414
Y G+ L IN+ ++TAL+GPSG GKST + RM+D G+ + D
Sbjct: 25 YYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDN 84
Query: 415 INI--RDITFSSLRERISYVGQDVFLFSNTVRYNILIG------RPMATEEEMIEIAKSA 466
+NI ++ +R RIS V Q F ++ N+ G + + EE +E A
Sbjct: 85 VNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRN 144
Query: 467 NAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTEN 526
A L +G+ NLSGGQ+QR+ IARA+ D IL+ DE TSALD
Sbjct: 145 AA------LWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
Query: 527 LVRQALSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569
+ + +S L T +++ H + +D+ ++ G++ E G
Sbjct: 199 SIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 87.9 bits (217), Expect = 8e-18
Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 16/229 (6%)
Query: 359 FFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD-----PSSGSIEID 413
F+ + VL +NL K K+TA +GPSG GKST + L ++ D G I
Sbjct: 88 FWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147
Query: 414 GINIRDITFSSL--RERISYVGQDVFLFSNTVRYNILIG--RPMATEEEMIE--IAKSAN 467
G N R SSL R RI V Q F ++ N+ G + +++E + KS
Sbjct: 148 GTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLK 207
Query: 468 AHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527
+ + D + G+ LSGGQ+QR+ IARA+ + +L++DE TSALD
Sbjct: 208 SAALWDEVKDDLD----KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAK 263
Query: 528 VRQALSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLL 575
+ + + L + + I++ H ++ +D +F G + E+G+ K +
Sbjct: 264 IEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIF 312
>gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 87.7 bits (218), Expect = 8e-18
Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 19/224 (8%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
R+V F+Y+ + INL K G++ L+G +GSGKST+ LL +Y P SG I +DG
Sbjct: 325 LRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384
Query: 415 INIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMS 474
+ R+ S V D LF L+G P A A ++
Sbjct: 385 KPVTAEQPEDYRKLFSAVFTDFHLFDQ------LLG-PEGKP------ANPALVEKWLER 431
Query: 475 LPQGYDTYVGEN---GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQA 531
L + + + LS GQK+R+A+ A+ + IL+LDE + D H Q
Sbjct: 432 LKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQV 491
Query: 532 LSRLMQ--GRTTIVIAHRISTIIEADHIIFIEDGKVSE-SGDQK 572
L L+Q G+T I+H I AD ++ + +G++SE +G+++
Sbjct: 492 LLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEER 535
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 87.4 bits (217), Expect = 9e-18
Identities = 65/208 (31%), Positives = 103/208 (49%), Gaps = 32/208 (15%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427
VL+ ++L +G+ A+VG SG GKST++ LL + PS+G + + G + RE
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAG----TAPLAEARE 81
Query: 428 RISYVGQDVFLFS-NTVRYNILIG-----RPMATEE-EMIEIAKSANAHDFIMSLPQGYD 480
+ QD L V N+ +G R A + + +A AN
Sbjct: 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN------------- 128
Query: 481 TYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--G 538
E + LSGGQKQR+A+ARA++ +L+LDE ALD T ++ + L Q G
Sbjct: 129 ----EWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHG 184
Query: 539 RTTIVIAHRISTIIE-ADHIIFIEDGKV 565
T +++ H +S + AD ++ IE+GK+
Sbjct: 185 FTVLLVTHDVSEAVAMADRVLLIEEGKI 212
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 87.4 bits (216), Expect = 9e-18
Identities = 76/260 (29%), Positives = 121/260 (46%), Gaps = 27/260 (10%)
Query: 351 GTTVFRDVFFSYKQGHP----VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPS 406
+ +V ++Y + P L+ +L FK K+T ++G +GSGKST+I L +
Sbjct: 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64
Query: 407 SGSIEIDG----INIRDIT-FSSLRERISYVGQ--DVFLFSNTVRYNILIGRPMATEEEM 459
+G + N++ I LR+ I V Q + LF T+ +I G P+ E
Sbjct: 65 TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFG-PVNLGENK 123
Query: 460 IEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSA 519
E K ++ LP+ YV + LSGGQK+R+A+A + DG+ LVLDE T
Sbjct: 124 QEAYKKVPELLKLVQLPE---DYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGG 180
Query: 520 LDTHTENLVRQALSRL--MQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG------- 569
LD E RL + I++ H + ++ AD +I + +GKV G
Sbjct: 181 LDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240
Query: 570 DQKYL--LQQKDGSLYKKMY 587
+Q+ L ++ LY+ MY
Sbjct: 241 NQELLTKIEIDPPKLYQLMY 260
>gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 87.6 bits (217), Expect = 9e-18
Identities = 73/227 (32%), Positives = 111/227 (48%), Gaps = 24/227 (10%)
Query: 355 FRDVFFSYKQGHPV----LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSI 410
F +V + Y G P+ L I+ + G ALVG +GSGKST++ + PSSG+I
Sbjct: 5 FENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTI 64
Query: 411 EIDGINIRDITFS----SLRERISYVGQ--DVFLFSNTVRYNILIGRPM---ATEEEMIE 461
I G +I T + LR+++S V Q + LF NTV ++ G P +E+E
Sbjct: 65 TIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFG-PKNFGFSEDE--- 120
Query: 462 IAKSANAHDFIMSLPQGYDTYVGENGS-NLSGGQKQRIAIARAMLRDGHILVLDEATSAL 520
AK A ++ + G + LSGGQ +R+AIA M + IL LDE + L
Sbjct: 121 -AKEK-ALKWLKKV--GLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGL 176
Query: 521 DTHTENLVRQALSRLMQ-GRTTIVIAHRISTIIE-ADHIIFIEDGKV 565
D + Q + G T I++ H + + E AD ++ +E GK+
Sbjct: 177 DPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 87.4 bits (217), Expect = 1e-17
Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 29/211 (13%)
Query: 355 FRDVFFSYKQGH---PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIE 411
F ++QG PVL ++L +G+ AL GPSG+GKST++ L Y P SG I
Sbjct: 7 LSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRIL 66
Query: 412 IDGIN-IRDITFSSLRE-------RISYVGQDVFL------FSNTVRYNILIGRPMATEE 457
+ D+ +S RE I YV Q FL + V L+ R + E
Sbjct: 67 VRHEGAWVDLAQASPREVLEVRRKTIGYVSQ--FLRVIPRVSALEVVAEPLLERGVPREA 124
Query: 458 EMIEIAKSANAHDFIMSLPQG-YDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEA 516
A+ A +++P+ + + SGG++QR+ IAR + D IL+LDE
Sbjct: 125 ARAR-ARELLAR---LNIPERLWHLP----PATFSGGEQQRVNIARGFIADYPILLLDEP 176
Query: 517 TSALDTHTENLVRQALSRLMQGRTTIV-IAH 546
T++LD +V + ++ ++ I H
Sbjct: 177 TASLDAANRQVVVELIAEAKARGAALIGIFH 207
>gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 230
Score = 87.2 bits (217), Expect = 1e-17
Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 25/226 (11%)
Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI 415
++ Y Q H +L G++L G++T ++G +G GK+T++ LM + SGSI +DG
Sbjct: 4 SNLNVYYGQSH-ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDG- 61
Query: 416 NIRDITFSSLRER----ISYV--GQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAH 469
DIT ER I+YV G+++F TV N+L G + +
Sbjct: 62 --EDITKLPPHERARAGIAYVPQGREIFPRL-TVEENLLTG---------LAALPRRSRK 109
Query: 470 --DFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527
D I L +G G +LSGGQ+Q++AIARA++ +L+LDE T +
Sbjct: 110 IPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKD 169
Query: 528 VRQALSRL--MQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570
+ + + RL G +++ + E AD +E G+V SG
Sbjct: 170 IGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGA 215
>gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 87.2 bits (216), Expect = 1e-17
Identities = 73/233 (31%), Positives = 117/233 (50%), Gaps = 43/233 (18%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
FR+V Y V+ G++ + G+ L+GP+G+GK+T + +L+ + P +GSI + G
Sbjct: 10 FRNVEKRYGD-KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCG 68
Query: 415 INIRDITFSSLRERISYVGQDVFLFSN-----TVRYNILI-----GRPMATEEEMI---- 460
+ + R+R+ V Q F N TVR N+L+ G A ++
Sbjct: 69 EPVPSRARHA-RQRVGVVPQ----FDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLL 123
Query: 461 EIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSAL 520
E AK L D VGE LSGG K+R+ +ARA++ D +LVLDE T+ L
Sbjct: 124 EFAK----------LENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGL 169
Query: 521 DTHTENLVRQALSRLM-QGRTTIVIAHRISTIIEA----DHIIFIEDG-KVSE 567
D +L+ + L L+ +G+T ++ H + EA D + IE+G K++E
Sbjct: 170 DPQARHLMWERLRSLLARGKTILLTTHFME---EAERLCDRLCVIEEGRKIAE 219
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 87.1 bits (216), Expect = 1e-17
Identities = 74/235 (31%), Positives = 117/235 (49%), Gaps = 35/235 (14%)
Query: 358 VFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD--PS---SGSIEI 412
V+++ K+ L+ ++L F ++TAL+GPSGSGKST++ + RM D P +GSI
Sbjct: 13 VYYNKKKA---LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVY 69
Query: 413 DGINIRDITFSS--LRERISYVGQDVFLFSNTVRYNILIG------RPMATEEEMIEIA- 463
+G NI + LR+ I V Q F ++ N++ G + +E +E +
Sbjct: 70 NGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSL 129
Query: 464 KSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTH 523
K A+ D + + +D+ +G LSGGQ+QR+ IAR + I++LDE TSALD
Sbjct: 130 KGASIWDEVKD--RLHDSALG-----LSGGQQQRVCIARVLATSPKIILLDEPTSALDPI 182
Query: 524 TENLVRQALSRLMQGRTTIVIAH------RISTIIEADHIIFIEDGKVSESGDQK 572
+ + + L L T +++ RIS D F DG + E D K
Sbjct: 183 SAGKIEETLLGLKDDYTMLLVTRSMQQASRIS-----DRTGFFLDGDLIEYNDTK 232
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 87.2 bits (216), Expect = 1e-17
Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 35/226 (15%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT------ 421
VL G+N +G+ AL+GPSGSGKSTI+ +LM + G I+++G + +
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 422 -------FSSLRERISYVGQDVFLFSN-TVRYNILIG-------RPMATEEEMIEIAKSA 466
+R +I V Q LF + TV N+ E+ +E+
Sbjct: 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMV 134
Query: 467 NAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTEN 526
D +P + LSGGQ+QR+AIARA+ +++ DE TSALD
Sbjct: 135 GLADKADHMP-----------AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVG 183
Query: 527 LVRQALSRLMQGR--TTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569
V + RL T +++ H + E AD + F + G++ E G
Sbjct: 184 EVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQG 229
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 86.6 bits (214), Expect = 1e-17
Identities = 61/226 (26%), Positives = 110/226 (48%), Gaps = 28/226 (12%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPS--SGSIEIDGINIRDITF 422
+ VL ++L ++G++ AL+G SG GK+T++ + + +G I I RD+T
Sbjct: 17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIAD---RDLTH 73
Query: 423 SSLRER-ISYVGQDVFLFSN-TVRYNILIG---RPMAT---EEEMIEIAKSANAHDFIMS 474
+ +R ++ + Q+ LF + V N+ G + M E + + K D
Sbjct: 74 APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAH 133
Query: 475 LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSR 534
LP + LSGG +QRIAIARA+ + +L+LDE SALD + +R+ ++
Sbjct: 134 LP-----------AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAA 182
Query: 535 L---MQGRTTIVIAH-RISTIIEADHIIFIEDGKVSESGDQKYLLQ 576
L + T + + H + + AD ++DG+++ G+ + L
Sbjct: 183 LHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 87.0 bits (215), Expect = 1e-17
Identities = 68/219 (31%), Positives = 107/219 (48%), Gaps = 22/219 (10%)
Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD--PS---SGSIEIDGINIR--DIT 421
L GI+L F ++TAL+GPSG GKST + L RM D P +G++ + G NI +
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 422 FSSLRERISYVGQDVFLFSNTVRYNILIG------RPMATEEEMIEIA-KSANAHDFIMS 474
LR+++ V Q F ++ N++ G + A +E +E + K A D +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD 140
Query: 475 LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSR 534
++ E+ +LSGGQ+QR+ IAR + +++LDE TSALD + + L
Sbjct: 141 -------HLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLE 193
Query: 535 LMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQK 572
L T I++ H + +D F G + E D K
Sbjct: 194 LRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTK 232
>gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 86.8 bits (215), Expect = 1e-17
Identities = 61/228 (26%), Positives = 107/228 (46%), Gaps = 24/228 (10%)
Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD-----PSSGSIE 411
+VF+ +Q L +++ ++TA++GPSG GKST + + RM D G +
Sbjct: 46 NVFYGDEQA---LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELT 102
Query: 412 IDGINI--RDITFSSLRERISYVGQDVFLFSNTVRYNILIG-----RPMATEEEMIEIAK 464
G N+ D+ +LR RI V Q F ++ N+ G +E + E +
Sbjct: 103 FRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLR 162
Query: 465 SANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHT 524
A D + + +G +LSGGQ+QR+ IARA+ D ++++DE SALD
Sbjct: 163 RAALWDEV-------KDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVA 215
Query: 525 ENLVRQALSRLMQGRTTIVIAHRI--STIIEADHIIFIEDGKVSESGD 570
+ + + L + T +++ H + + I +F+ G++ E D
Sbjct: 216 TSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDD 263
>gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 86.6 bits (215), Expect = 1e-17
Identities = 74/253 (29%), Positives = 119/253 (47%), Gaps = 41/253 (16%)
Query: 342 HAVNL----PVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIIN 397
A++L PV +G F ++ L G++ + GK A+VG SG GKST+
Sbjct: 7 QAIDLKKHYPVKRG-------LFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLAR 59
Query: 398 LLMRMYDPSSGSIEIDGINIRD---ITFSSLRERISYVGQDVFLFSN---TVRYNILIGR 451
LL + P+ G + G ++ LR++I V Q+ + N V IL
Sbjct: 60 LLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQ-IL-EE 117
Query: 452 PMATEEEMIEIAKSANAHDFIMSL----PQGYDTYVGENGSNLSGGQKQRIAIARAMLRD 507
P+ + + A +M+ P+ YD Y SGGQ+QRIAIARA++ D
Sbjct: 118 PLLINTSLSAAERREKALA-MMAKVGLRPEHYDRY----PHMFSGGQRQRIAIARALMLD 172
Query: 508 GHILVLDEATSALDTHTENLVR-QALSRLMQ-----GRTTIVIAHRISTIIE--ADHIIF 559
++V DE SALD V+ Q L+ +M G + + I+H +S ++E AD ++
Sbjct: 173 PDVVVADEPVSALDVS----VQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMV 227
Query: 560 IEDGKVSESGDQK 572
+ G+ E G ++
Sbjct: 228 MYLGRCVEKGTKE 240
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 86.8 bits (215), Expect = 2e-17
Identities = 71/234 (30%), Positives = 113/234 (48%), Gaps = 20/234 (8%)
Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI 415
RD+ +SY L+ IN A++GP+G+GKST+ + P+SGS+ I G
Sbjct: 7 RDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRG- 65
Query: 416 NIRDITFSSLRERISYVG-----QDVFLFSNTVRYNILIGRP--MATEEEMIEIAKSANA 468
IT ++RE +VG D +FS TV +I G P + +EE + S+
Sbjct: 66 --EPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFG-PINLGLDEETVAHRVSSAL 122
Query: 469 HDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528
H G + +LSGG+K+R+AIA + + +LVLDE T+ LD +
Sbjct: 123 HML------GLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKEL 176
Query: 529 RQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKD 579
L+ L + G T I H++ + E AD+I ++ G++ G + + Q D
Sbjct: 177 IDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230
>gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 86.5 bits (214), Expect = 2e-17
Identities = 62/224 (27%), Positives = 108/224 (48%), Gaps = 10/224 (4%)
Query: 361 SYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD-----PSSGSIEIDGI 415
+Y +L +NL +TAL+GPSG GKST I L RM D G I +DG+
Sbjct: 11 TYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGV 70
Query: 416 NIRD--ITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIM 473
+I D + LR+++ V Q F ++ N+ G + E++ I +
Sbjct: 71 DIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAA 130
Query: 474 SLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALS 533
+L + ++ LSGGQ+QR+ IAR + ++++DE SALD + + +
Sbjct: 131 ALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIH 190
Query: 534 RLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG--DQKYL 574
+L + T +++ H + + + F +G++ ESG DQ ++
Sbjct: 191 KLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFI 234
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included).
Length = 325
Score = 86.4 bits (214), Expect = 2e-17
Identities = 60/191 (31%), Positives = 92/191 (48%), Gaps = 11/191 (5%)
Query: 384 LVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSN-T 442
L+GPSG GK+T++ LL P SGSI +DG ++ I+ V Q LF + T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV--TNVPPHLRHINMVFQSYALFPHMT 58
Query: 443 VRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIAR 502
V N+ G M EI + L Q + + LSGGQ+QR+A+AR
Sbjct: 59 VEENVAFGLKMRKVPRA-EIKPRVLE---ALRLVQ-LEEFADRKPHQLSGGQQQRVALAR 113
Query: 503 AMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--GRTTIVIAHRIS-TIIEADHIIF 559
A++ IL+LDE SALD + ++ L + + G T + + H + +D I
Sbjct: 114 ALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAI 173
Query: 560 IEDGKVSESGD 570
+ GK+++ G
Sbjct: 174 MRKGKIAQIGT 184
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina.
Length = 221
Score = 86.3 bits (214), Expect = 2e-17
Identities = 59/223 (26%), Positives = 112/223 (50%), Gaps = 27/223 (12%)
Query: 361 SYKQGH---PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINI 417
Y++G VL G++L G++ A+VG SGSGKST+++LL + +P+SG + +G ++
Sbjct: 10 RYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSL 69
Query: 418 RDIT---FSSLRER-ISYVGQDVFLFSN-TVRYNI----LIGRPMATEEEMI--EIAKSA 466
++ + LR + + ++ Q L + T N+ LIG+ E + E+ +
Sbjct: 70 SKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKV 129
Query: 467 NAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTEN 526
I P S LSGG++QR+AIARA++ +++ DE T LD +
Sbjct: 130 GLEHRINHRP-----------SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAK 178
Query: 527 LVRQALSRL--MQGRTTIVIAHRISTIIEADHIIFIEDGKVSE 567
++ + L + +V+ H + + D ++ ++DG++
Sbjct: 179 IIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 86.1 bits (214), Expect = 2e-17
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 21/198 (10%)
Query: 382 TALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRD----ITFSSLRERISYVGQDVF 437
TA+ G SG+GK+++IN + + P G I ++G + D I + RI YV QD
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDAR 86
Query: 438 LFSN-TVRYNILIGRPMATEEEMIEIAKSANAH-DFIMSLPQGYDTYVGENGSNLSGGQK 495
LF + VR N+ G +AKS A D I++L G + + +LSGG+K
Sbjct: 87 LFPHYKVRGNLRYG-----------MAKSMVAQFDKIVAL-LGIEPLLDRYPGSLSGGEK 134
Query: 496 QRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQG-RTTIV-IAHRISTIIE 553
QR+AI RA+L +L++DE ++LD + + L RL + I+ ++H + I+
Sbjct: 135 QRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILR 194
Query: 554 -ADHIIFIEDGKVSESGD 570
AD ++ +E GKV G
Sbjct: 195 LADRVVVLEQGKVKAFGP 212
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 86.2 bits (213), Expect = 2e-17
Identities = 72/232 (31%), Positives = 108/232 (46%), Gaps = 23/232 (9%)
Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD--PSS---GSI 410
RDV F Y H L GI++ + + A +GPSG GKST + L RM D P++ G I
Sbjct: 7 RDVNFWYGDFH-ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEI 65
Query: 411 EIDGINIRD--ITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMA-------TEEEMIE 461
IDG NI D + LR+ + V Q F ++ N+ G + + + E
Sbjct: 66 RIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEE 125
Query: 462 IAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD 521
K A D + + E+ LSGGQ+QR+ IARAM +L++DE SALD
Sbjct: 126 TLKGAALWDEVKD-------KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALD 178
Query: 522 THTENLVRQALSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQK 572
+ V + + L + T +++ H + +D F G++ E D K
Sbjct: 179 PISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTK 230
>gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 85.8 bits (213), Expect = 3e-17
Identities = 68/226 (30%), Positives = 110/226 (48%), Gaps = 26/226 (11%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
R + S+ G V+S ++L +G+ L+GPSG GK+T++ L+ P SG I +DG
Sbjct: 17 LRGISKSF-DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDG 75
Query: 415 INIRDITFSSLRER-ISYVGQDVFLFSN-TVRYNILIGRPMA------TEEEMIEIAKSA 466
+DIT R ++ V Q LF + TV N+ G M ++E +
Sbjct: 76 ---QDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMV 132
Query: 467 NAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTEN 526
+F P LSGGQ+QR+AIARA++ +L+LDE+ SALD
Sbjct: 133 QLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRK 181
Query: 527 LVRQALSRLMQ--GRTTIVIAH-RISTIIEADHIIFIEDGKVSESG 569
++ L L + G T + + H + + +D I+ + DG++ + G
Sbjct: 182 QMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 85.5 bits (211), Expect = 3e-17
Identities = 67/225 (29%), Positives = 112/225 (49%), Gaps = 15/225 (6%)
Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGS-----I 410
R V F Y + H VL IN+ F ++TA++GPSG GKST++ L RM D SG+ +
Sbjct: 8 RGVNFFYHK-HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAV 66
Query: 411 EIDGINIR--DITFSSLRERISYVGQDVFLFSNTVRYNILIGRPM---ATEEEMIEIAKS 465
+D NI ++ +LR+R+ V Q F ++ N+ G M + + E+ +
Sbjct: 67 LLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEK 126
Query: 466 ANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTE 525
+ +L + ++G LSGGQ+QR+ IAR + + ++++DE SALD +
Sbjct: 127 SLRQ---AALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVST 183
Query: 526 NLVRQALSRLMQGRTTIVIAHRISTIIEA-DHIIFIEDGKVSESG 569
+ + + L Q T ++ H + A D F+ G + E G
Sbjct: 184 MRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYG 228
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 85.0 bits (210), Expect = 5e-17
Identities = 70/244 (28%), Positives = 117/244 (47%), Gaps = 32/244 (13%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTII---NLLMRMYDPS--SGSIEIDGINIRDITF 422
VL G+NL +TAL+GPSGSGKST++ N L+ +Y + SG + +DG +I +
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 423 SSLRERISYVGQ------DVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLP 476
LR R+ V Q ++ +F N V + + R + +++E+ E + A +
Sbjct: 78 IELRRRVQMVFQIPNPIPNLSIFEN-VALGLKLNRLVKSKKELQERVRWA------LEKA 130
Query: 477 QGYDTY---VGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALS 533
Q +D + LSGGQ+QR+ IARA+ +L+ DE T+ LD +
Sbjct: 131 QLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFL 190
Query: 534 RLMQGRTTIVIAH------RISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMY 587
L + T +++ H RIS D++ F+ G++ E G + + L +K
Sbjct: 191 ELKKDMTIVLVTHFPQQAARIS-----DYVAFLYKGQIVEWGPTREVFTNPRHELTEKYV 245
Query: 588 ASQL 591
+L
Sbjct: 246 TGRL 249
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 84.8 bits (210), Expect = 6e-17
Identities = 67/229 (29%), Positives = 106/229 (46%), Gaps = 31/229 (13%)
Query: 356 RDVFFSYK--QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEID 413
+++ F YK Q L+ ++ K G+ +++G +GSGKST + L+ + + SG I ID
Sbjct: 8 KNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIID 67
Query: 414 GINIRDITFSSLRERISYVGQ--DVFLFSNTVRYNILIG--RPMATEEEMIEIAKSA--- 466
G + + +R +I V Q D TV ++ G EEM E A
Sbjct: 68 GDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALEL 127
Query: 467 -NAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTE 525
DF P + LSGGQKQR+AIA A+ I++LDEATS LD
Sbjct: 128 VGMQDFKEREP-----------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEG- 175
Query: 526 NLVRQALSRLMQ------GRTTIVIAHRISTIIEADHIIFIEDGKVSES 568
R L + ++ T I I H + + +D ++ +++G+V +
Sbjct: 176 ---RLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVEST 221
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 84.6 bits (209), Expect = 7e-17
Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 29/240 (12%)
Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD-----PSSGSIE 411
++++ KQ L+ INL K+TAL+GPSG GKST + L RM D G +
Sbjct: 11 NLWYGEKQA---LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVL 67
Query: 412 IDGINI--RDITFSSLRERISYVGQDVFLFSNTVRYNILIG------RPMATEEEMIEIA 463
+DG NI +D+ LR+R+ V Q F ++ N+ G + ++++E A
Sbjct: 68 LDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWA 127
Query: 464 --KSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD 521
K+A + L + + LSGGQ+QR+ IAR + ++++DE TSALD
Sbjct: 128 LKKAALWDEVKDDLKK--------SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179
Query: 522 THTENLVRQALSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG--DQKYLLQQK 578
+ + + L + T +++ H + +D+ F G + E ++ +L QK
Sbjct: 180 PISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQK 239
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 83.9 bits (207), Expect = 1e-16
Identities = 65/229 (28%), Positives = 108/229 (47%), Gaps = 10/229 (4%)
Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPS-----SGSIE 411
DV Y V +NL + G + AL+GPSG GK+T + + RM+D + +G I
Sbjct: 9 DVNIYYGDKQAV-KNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRIL 67
Query: 412 IDGINIRD--ITFSSLRERISYVGQDVFLF-SNTVRYNILIGRPMATEEEMIEIAKSANA 468
+DG +I + ++R R+ V Q F + +V N++ G +A + + + A
Sbjct: 68 LDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAER 127
Query: 469 HDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528
+L + + LSGGQ+QR+ IARA+ + IL++DE TSALD + +
Sbjct: 128 SLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARI 187
Query: 529 RQALSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQ 576
++ L + T I++ H + +D F G + E G L
Sbjct: 188 EDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT 236
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This model does not recognize the highly
divergent NodI from Azorhizobium caulinodans.
Length = 303
Score = 83.1 bits (205), Expect = 2e-16
Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 17/233 (7%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427
V++ ++ G+ L+GP+G+GKSTI +L+ M P G I + G + + R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLA-RV 77
Query: 428 RISYVGQ-DVFLFSNTVRYNILI-GRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGE 485
I V Q D TVR N+L+ GR IE + +F L D V
Sbjct: 78 AIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPS-LLEF-ARLESKADVRV-- 133
Query: 486 NGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL-SRLMQGRTTIVI 544
+ LSGG K+R+ +ARA++ D +L+LDE T+ LD H +L+ + L S L +G+T ++
Sbjct: 134 --ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLT 191
Query: 545 AHRISTIIEA----DHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLE 593
H + EA D + +E G+ G L+ ++ G ++Y E
Sbjct: 192 THFME---EAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNVIEIYGGDPDE 241
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase.
Length = 230
Score = 82.9 bits (205), Expect = 2e-16
Identities = 63/209 (30%), Positives = 110/209 (52%), Gaps = 20/209 (9%)
Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRER 428
L G+NL + G+ +L+G SG GKST++NL+ + P+SG + ++G + IT +R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEG---KQITEPG-PDR 56
Query: 429 ISYVGQDVFLFS-NTVRYNILIG----RPMATEEEMIEIAKSANAHDFIMSLPQGYDTYV 483
+ V Q+ L TVR NI + P ++ E I + H ++ L + D
Sbjct: 57 M-VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEE---HIALVGLTEAADKRP 112
Query: 484 GENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--GRTT 541
G+ LSGG KQR+AIARA+ +L+LDE ALD T +++ L ++ + T
Sbjct: 113 GQ----LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTV 168
Query: 542 IVIAHRI-STIIEADHIIFIEDGKVSESG 569
+++ H + ++ +D ++ + +G + G
Sbjct: 169 LMVTHDVDEALLLSDRVVMLTNGPAANIG 197
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 82.6 bits (204), Expect = 2e-16
Identities = 66/239 (27%), Positives = 112/239 (46%), Gaps = 32/239 (13%)
Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD-----PSSGSIE 411
D+F+ Q L INL + ++TAL+GPSG GKST++ L RM D +G +
Sbjct: 10 DLFYGENQA---LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLT 66
Query: 412 IDGINI-RDITFSSLRERISYVGQDVFLFSNTVRYNILIG------RPMATEEEMIEIAK 464
+DG +I +I + LR ++ V Q F ++ N+ G + +E++E +
Sbjct: 67 MDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSL 126
Query: 465 SANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHT 524
A L + + LSGGQ+QR+ IAR + + ++++DE TSALD
Sbjct: 127 RGAA------LWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
Query: 525 ENLVRQALSRLMQGRTTIVIAH------RISTIIEADHIIFIEDGKVSESGDQKYLLQQ 577
+ + + + L + T +++ H RIS D F G++ E D + +
Sbjct: 181 THKIEELMEELKKNYTIVIVTHSMQQARRIS-----DRTAFFLMGELVEHDDTQVIFSN 234
>gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 82.5 bits (204), Expect = 3e-16
Identities = 72/238 (30%), Positives = 107/238 (44%), Gaps = 38/238 (15%)
Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDP-----SSGSI 410
RDV Y + L ++L +TA +GPSG GKST + L RM D +G I
Sbjct: 23 RDVSVFYGEKQ-ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKI 81
Query: 411 EIDGINIRD--ITFSSLRERISYVGQDVFLFSNTVRYNILIGRPM----ATEEEMIEIAK 464
+DG +I D + LR R+ V Q F ++ N+ G + ++ E+ EI +
Sbjct: 82 TLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVE 141
Query: 465 SANAHDFIMSLPQG-----YDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSA 519
+ SL + + E G+ LSGGQ+QR+ IARA+ ++++DE SA
Sbjct: 142 T--------SLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSA 193
Query: 520 LDTHTENLVRQALSRLMQGRTTIVI-------AHRISTIIEADHIIFIEDGKVSESGD 570
LD V + + L + TIVI A R+S F G + E GD
Sbjct: 194 LDPIATAKVEELIDEL-RQNYTIVIVTHSMQQAARVS-----QRTAFFHLGNLVEVGD 245
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease.
Length = 2272
Score = 82.8 bits (204), Expect = 3e-16
Identities = 60/217 (27%), Positives = 109/217 (50%), Gaps = 18/217 (8%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424
G P + +N+ F ++TA +G +G+GK+T +++L + P+SG++ + G +I + +
Sbjct: 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDA 1000
Query: 425 LRERISYVGQDVFLFSN-TVRYNILI-----GRPMATEEEMIEIAKSANAHDFIMSLPQG 478
+R+ + Q LF + TV +IL GR + EE +E+ M G
Sbjct: 1001 VRQSLGMCPQHNILFHHLTVAEHILFYAQLKGR--SWEEAQLEMEA--------MLEDTG 1050
Query: 479 YDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQG 538
E +LSGG ++++++A A + D ++VLDE TS +D ++ + L + G
Sbjct: 1051 LHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSG 1110
Query: 539 RTTIVIAHRISTI-IEADHIIFIEDGKVSESGDQKYL 574
RT I+ H + + D I I G++ SG +L
Sbjct: 1111 RTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFL 1147
Score = 42.3 bits (99), Expect = 3e-04
Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 14/187 (7%)
Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLR 426
P + + + + G+ L+G +G+GK+T +L +SG + G +I S +
Sbjct: 1953 PAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIL-TNISDVH 2011
Query: 427 ERISYVGQ----DVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTY 482
+ + Y Q D L Y L R E EI K AN I SL G Y
Sbjct: 2012 QNMGYCPQFDAIDDLLTGREHLY--LYARLRGVPAE--EIEKVANWS--IQSL--GLSLY 2063
Query: 483 VGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL-SRLMQGRTT 541
SGG K++++ A A++ +++LDE T+ +D ++ + S + +GR
Sbjct: 2064 ADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAV 2123
Query: 542 IVIAHRI 548
++ +H +
Sbjct: 2124 VLTSHSM 2130
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 81.6 bits (201), Expect = 6e-16
Identities = 62/216 (28%), Positives = 104/216 (48%), Gaps = 19/216 (8%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427
V + + G TA++GP+G GKST++ L R+ P+ G + +DG +I+ +
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 428 RISYVGQDVFLFSN-TVRYNILIGR----PMAT---EEEMIEIAKSANAHDFIMSLPQGY 479
RI + Q+ + TV+ + GR P+ T +E+ + K+ A Q
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV 141
Query: 480 DTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRL--MQ 537
DT LSGGQ+QR IA + ++ I++LDE T+ LD + + + LS L +
Sbjct: 142 DT--------LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREK 193
Query: 538 GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQK 572
G T + H ++ A H+I + +GK+ G K
Sbjct: 194 GYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPK 229
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 81.0 bits (200), Expect = 7e-16
Identities = 72/237 (30%), Positives = 123/237 (51%), Gaps = 24/237 (10%)
Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI 415
++ ++Y G L GIN+ K G++TA++G +G+GKST+ L + PSSG I DG
Sbjct: 9 EELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDG- 67
Query: 416 NIRDITFS-----SLRERISYVGQ--DVFLFSNTVRYNILIGRPM---ATEEEMIEIAKS 465
+ I +S LRE + V Q D LFS +V ++ G + E+E+ + +
Sbjct: 68 --KPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFG-AVNLKLPEDEVRKRVDN 124
Query: 466 ANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD-THT 524
A I L + T+ LS GQK+R+AIA ++ + +LVLDE T+ LD
Sbjct: 125 ALKRTGIEHL-KDKPTHC------LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV 177
Query: 525 ENLVRQALSRLMQGRTTIVIA-HRISTI-IEADHIIFIEDGKVSESGDQKYLLQQKD 579
+++ + + TI+IA H I + + D++ +++G+V G+ K + +K+
Sbjct: 178 SEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKE 234
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 81.1 bits (200), Expect = 7e-16
Identities = 63/226 (27%), Positives = 110/226 (48%), Gaps = 16/226 (7%)
Query: 366 HPVLSGINLCFKSGKMTALVGPSGSGKSTII---NLLMRMYDPS---SGSIEIDGINI-- 417
H L INL ++TA++GPSG GKST I NL+++M P+ +G + +G NI
Sbjct: 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMV-PNVKLTGEMNYNGSNILK 83
Query: 418 RDITFSSLRERISYVGQDVFLFSNTVRYNILIG---RPMATEEEMIEIAKSANAHDFIMS 474
+ LR+ I V Q F ++ N+ G ++++ EI + + ++
Sbjct: 84 GKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKD---VA 140
Query: 475 LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSR 534
L + +LSGGQ+QR+ IARA+ + +L++DE TSALD + + + + +
Sbjct: 141 LWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILK 200
Query: 535 LMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKD 579
L + T +++ H + +D F G++ E D + D
Sbjct: 201 LKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPD 246
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 81.0 bits (200), Expect = 8e-16
Identities = 76/251 (30%), Positives = 116/251 (46%), Gaps = 35/251 (13%)
Query: 345 NLPVGKGTT-VFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMY 403
TT R+V F G +L ++L F +GK+T L+G +GSGKST++ +L R
Sbjct: 3 EYTNHSDTTFALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ 61
Query: 404 DPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSN-TVRYNILIGR-PM-------- 453
PS G I +D + + + +++Y+ Q + TVR + IGR P
Sbjct: 62 PPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFG 121
Query: 454 ATEEEMIEIAKS-----ANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDG 508
A + E +E A S AH + S LSGG++QR IA + +D
Sbjct: 122 AADREKVEEAISLVGLKPLAHRLVDS---------------LSGGERQRAWIAMLVAQDS 166
Query: 509 HILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIA--HRISTIIE-ADHIIFIEDGKV 565
L+LDE TSALD + V + RL Q R VIA H I+ D+++ + G++
Sbjct: 167 RCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEM 226
Query: 566 SESGDQKYLLQ 576
G L++
Sbjct: 227 IAQGTPAELMR 237
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 80.7 bits (199), Expect = 1e-15
Identities = 71/226 (31%), Positives = 105/226 (46%), Gaps = 27/226 (11%)
Query: 362 YKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD--PS---SGSIEIDGIN 416
Y + H L INL ++TA++GPSG GKST I L RM + PS +G I N
Sbjct: 34 YGEDH-ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQN 92
Query: 417 IRDITFS--SLRERISYVGQDVFLFSNTVRYNILIG---RPMATEEEMIEIA-KSANAHD 470
I D ++S LR + V Q F ++ N+ G + ++ + EI KS
Sbjct: 93 IFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAA 152
Query: 471 FIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQ 530
L N LSGGQ+QR+ IAR + + ++++DE TSALD + V +
Sbjct: 153 IWDELKDRLHD----NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEE 208
Query: 531 ALSRLMQGRTTIVIAH------RISTIIEADHIIFIEDGKVSESGD 570
+ L + + I++ H RIS D F +G V+E D
Sbjct: 209 LVQELKKDYSIIIVTHNMQQAARIS-----DKTAFFLNGYVNEYDD 249
>gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 80.7 bits (200), Expect = 1e-15
Identities = 59/176 (33%), Positives = 87/176 (49%), Gaps = 24/176 (13%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMY----DPSSGSI 410
+ V SY V+ GI+L G+ LVGPSG GKST L+RM +SG I
Sbjct: 6 LQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKST----LLRMVAGLERITSGEI 61
Query: 411 EIDGINIRDITFSSLRER-ISYVGQDVFLFSN-TVRYNILIG---RPMATEEEMIEIAKS 465
I G R + +R I+ V Q+ L+ + +VR N+ G R M E +A++
Sbjct: 62 WIGG---RVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEA 118
Query: 466 ANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD 521
A I+ L + + LSGGQ+QR+A+ RA++R+ + + DE S LD
Sbjct: 119 AR----ILEL----EPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 80.1 bits (197), Expect = 1e-15
Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 19/240 (7%)
Query: 364 QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMY--DPSSGS-IEIDGINI--- 417
H L ++L G+M AL+GPSGSGKST++ L + D S+GS IE+ G +
Sbjct: 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE 74
Query: 418 ----RDITFSSLRERISYVGQDVFLFSN-TVRYNILIGRPMATE--EEMIEIAKSANAHD 470
RDI S R Y+ Q L + +V N+LIG +T
Sbjct: 75 GRLARDIRKS--RANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQR 132
Query: 471 FIMSLPQ-GYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVR 529
+ +L + G + + S LSGGQ+QR+AIARA+++ +++ DE ++LD + +V
Sbjct: 133 ALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVM 192
Query: 530 QALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKM 586
L + Q G T +V H++ + + I+ + G V G + ++ LY+ +
Sbjct: 193 DTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDNERFDHLYRSI 252
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 80.1 bits (197), Expect = 1e-15
Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 11/220 (5%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSG-----SIEIDG---IN 416
G VL +++ F + +T+L+GP+GSGK+T + L RM D SG + + G N
Sbjct: 33 GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFN 92
Query: 417 IRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLP 476
RD+ R R+ + Q F ++ N+L G E A A + L
Sbjct: 93 YRDVL--EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLW 150
Query: 477 QGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM 536
+ ++ LSGGQ+Q + +AR + + +L+LDE TSALD T + + + L
Sbjct: 151 DAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 537 QGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLL 575
T I++ H ++ +D DG++ E G + L
Sbjct: 211 DRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 79.9 bits (197), Expect = 2e-15
Identities = 65/232 (28%), Positives = 110/232 (47%), Gaps = 28/232 (12%)
Query: 352 TTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIE 411
V DV +++ GH L + G + ALVG +GSGKST+ LM +SG I
Sbjct: 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKIS 65
Query: 412 IDGINIRDITFSSLRERISYVGQDV---FLFSNTVRYNILIGR---------PMATEEEM 459
I G R +L ++YV Q + F V +++GR + ++
Sbjct: 66 ILGQPTRQALQKNL---VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQI 122
Query: 460 IEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSA 519
+ A + + + + +GE LSGGQK+R+ +ARA+ + G +++LDE +
Sbjct: 123 VTAALAR------VDMVEFRHRQIGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTG 172
Query: 520 LDTHTENLVRQALSRLM-QGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESG 569
+D TE + L L +G+T +V H + ++ E D+ + ++ G V SG
Sbjct: 173 VDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVK-GTVLASG 223
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 79.5 bits (196), Expect = 2e-15
Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 21/184 (11%)
Query: 376 FKSGKMTALVGPSGSGKSTIINLLMRMYD--PS---SGSIEIDGINIRD--ITFSSLRER 428
GK+TAL+GPSG GKST++ L RM D G + DG ++ D + +R R
Sbjct: 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR 95
Query: 429 ISYVGQDVFLFSNTVRYNILIG-RPMATEEEMIEIAKSANAHDFIMSLPQG--YDT---Y 482
I V Q F ++ NI G R +M E+ + SL + +D
Sbjct: 96 IGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVER--------SLRKAAVWDECKDK 147
Query: 483 VGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTI 542
+ E+G +LSGGQ+QR+ IAR + + ++++DE SALD + + + + L + T +
Sbjct: 148 LNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIV 207
Query: 543 VIAH 546
++ H
Sbjct: 208 IVTH 211
>gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 78.9 bits (194), Expect = 3e-15
Identities = 59/206 (28%), Positives = 96/206 (46%), Gaps = 8/206 (3%)
Query: 372 INLCFKSGKMTALVGPSGSGKSTIINLLMRMYD-----PSSGSIEIDGINIRD--ITFSS 424
I++ + +TAL+GPSG GKST + + RM D S G I +G+NI D I +
Sbjct: 40 ISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVN 99
Query: 425 LRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVG 484
LR I V Q F ++ NI A E + + +L +
Sbjct: 100 LRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLH 159
Query: 485 ENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVI 544
+ +LSGGQ+QR+ IAR + +L+LDE SALD + + + ++ L + + I++
Sbjct: 160 SSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIV 219
Query: 545 AHRISTIIE-ADHIIFIEDGKVSESG 569
H + + +D F +G + E
Sbjct: 220 THNMQQALRVSDRTAFFLNGDLVEYD 245
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous.
Length = 230
Score = 78.9 bits (195), Expect = 4e-15
Identities = 65/224 (29%), Positives = 99/224 (44%), Gaps = 28/224 (12%)
Query: 370 SGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDP----SSGSIEIDGINIRDITFSSL 425
+NL K G++ ALVG SGSGKS ++ + P +SG I +DG R + S+
Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDG---RPLLPLSI 59
Query: 426 RER-ISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIM------SLPQG 478
R R I+ + Q+ N + + A E S A I+ LP
Sbjct: 60 RGRHIATIMQNPRTAFNPLF-TM---GNHAIETLRSLGKLSKQARALILEALEAVGLPDP 115
Query: 479 ---YDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRL 535
Y + LSGG QR+ IA A+L + L+ DE T+ LD + V + L L
Sbjct: 116 EEVLKKYPFQ----LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLREL 171
Query: 536 MQGRTT--IVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQ 576
Q T ++I H + + AD + ++DG++ E G K +
Sbjct: 172 RQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY 215
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 78.1 bits (193), Expect = 6e-15
Identities = 69/221 (31%), Positives = 114/221 (51%), Gaps = 16/221 (7%)
Query: 355 FRDVFFSYKQGHPVLS-GINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEID 413
R+V +Y G V+S INL G+ VGPSG GKST++ ++ + D +SG + I
Sbjct: 6 LRNVTKAY--GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIG 63
Query: 414 GINIRDITFSSLRER-ISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDF 471
+ D+ + ER + V Q L+ + +V N+ G +A ++ EI + N
Sbjct: 64 EKRMNDVPPA---ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK-EEINQRVNQVAE 119
Query: 472 IMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQA 531
++ L D LSGGQ+QR+AI R ++ + + +LDE S LD +R
Sbjct: 120 VLQLAHLLD----RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE 175
Query: 532 LSRLMQ--GRTTIVIAH-RISTIIEADHIIFIEDGKVSESG 569
+SRL + GRT I + H ++ + AD I+ ++ G+V++ G
Sbjct: 176 ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 78.1 bits (192), Expect = 6e-15
Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 20/232 (8%)
Query: 362 YKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD--PS---SGSIEIDGIN 416
+ + H V +++ F +TA++GPSG GKST++ + RM+D PS +G I +D +
Sbjct: 14 FGKNHAVKD-VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTD 72
Query: 417 IRD--ITFSSLRERISYVGQD------VFLFSNTVRYNILIGRPMATEEEMIEIAKSANA 468
I D + S+R R+ V Q + ++ N + L GR E EI +S+
Sbjct: 73 IYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGR--VNRSEADEIVESSLK 130
Query: 469 HDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528
++L + N LSGGQ+QR+ IAR + ++++DE SALD + +
Sbjct: 131 R---VALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKI 187
Query: 529 RQALSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKD 579
+ + L + T I++ H + +D+ F G + E G+ K + +
Sbjct: 188 EELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPE 239
>gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 77.8 bits (192), Expect = 7e-15
Identities = 65/238 (27%), Positives = 105/238 (44%), Gaps = 27/238 (11%)
Query: 356 RDVFFSYKQG-----HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSI 410
++V + Y+ L +NL K G+ ++G +GSGKSTI + + PS G +
Sbjct: 8 KNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKV 67
Query: 411 EIDGINIRDI-TFSSLRERISYVGQ--DVFLFSNTVRYNILIG------RPMATEEEMIE 461
+DG++ D +R + V Q D + + V ++ G P E + E
Sbjct: 68 YVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDE 127
Query: 462 IAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD 521
K +++ P LSGGQKQR+AIA + ++ DE T+ LD
Sbjct: 128 SLKKVGMYEYRRHAPH-----------LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLD 176
Query: 522 THTENLVRQALSRLMQ--GRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQ 577
V + L + G T I+I H + +EAD II ++ GKV G K + ++
Sbjct: 177 PSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 77.6 bits (192), Expect = 8e-15
Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 28/211 (13%)
Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRER 428
L I+ ++G++ AL+G +G+GKST++ +L Y P +GSI IDG +++ F+S
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG---QEMRFASTTAA 76
Query: 429 ----ISYVGQDVFLFSN-TVRYNILIGR-P----MATEEEMIEIAKSANAH---DFIMSL 475
++ + Q++ L TV N+ +G+ P + + A+ H D
Sbjct: 77 LAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDT 136
Query: 476 PQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDT-HTENLVRQALSR 534
P Y LS GQ+Q + IA+A+ R+ ++ DE TS+L E L R
Sbjct: 137 PLKY----------LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIREL 186
Query: 535 LMQGRTTIVIAHRISTIIE-ADHIIFIEDGK 564
+GR + ++HR+ I D I +DG+
Sbjct: 187 RAEGRVILYVSHRMEEIFALCDAITVFKDGR 217
Score = 40.3 bits (95), Expect = 0.002
Identities = 52/221 (23%), Positives = 100/221 (45%), Gaps = 27/221 (12%)
Query: 364 QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFS 423
+G + I+ ++G++ L G G+G+S ++ LL ++G + +DG + I
Sbjct: 264 KGPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDG---KPIDIR 320
Query: 424 SLRERISYVG---------QDVFLFSNTVRYNILIG--RPMATEEEMIEIAKSA-NAHDF 471
S R+ I G + + ++V NI I R +I A NA F
Sbjct: 321 SPRDAIR-AGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRF 379
Query: 472 IMSL----PQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527
I SL P + + NLSGG +Q+ + R + D +++LDE T +D ++
Sbjct: 380 IRSLNIKTPSR-EQLIM----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHE 434
Query: 528 VRQALSRLM-QGRTTIVIAHRISTIIE-ADHIIFIEDGKVS 566
+ + L QG + ++ + ++ AD I+ + +G+++
Sbjct: 435 IYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIA 475
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 77.6 bits (191), Expect = 8e-15
Identities = 60/232 (25%), Positives = 103/232 (44%), Gaps = 17/232 (7%)
Query: 351 GTTVFR--DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD--PS 406
+ ++ Y + H L I + ++TAL+GPSG GKST++ RM D P
Sbjct: 3 MEIILSTKNLNLWYGEKH-ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPG 61
Query: 407 S---GSIEIDGINIRDITFS--SLRERISYVGQDVFLFSNTVRYNILIG---RPMATEEE 458
G I +G NI D +LR +I V Q F ++ N+ G ++
Sbjct: 62 CRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKT 121
Query: 459 MIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATS 518
+ I + + +L + ++ +LSGGQ+QR+ IAR + + ++++DE S
Sbjct: 122 LDTIVEKSLKG---AALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCS 178
Query: 519 ALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEA-DHIIFIEDGKVSESG 569
ALD + + L + T I++ H + D+ F+ GK+ E
Sbjct: 179 ALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFD 230
>gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 77.4 bits (191), Expect = 1e-14
Identities = 71/239 (29%), Positives = 109/239 (45%), Gaps = 38/239 (15%)
Query: 358 VFFSYKQG--------HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGS 409
V F ++G + V+ I+ + G+ LVG SGSGKST L+R+ S G
Sbjct: 283 VAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGE 341
Query: 410 IEIDGINIRDITFSSL---RERISYVGQDVFLFSNTVRYNIL--------IGRPMAT--- 455
I DG + ++ L R RI V QD N R N+L + +P +
Sbjct: 342 IWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNP-RLNVLQIIEEGLRVHQPTLSAAQ 400
Query: 456 -EEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLD 514
E+++I + + P+ Y E SGGQ+QRIAIARA++ +++LD
Sbjct: 401 REQQVIAVMEEVGLD------PETRHRYPAE----FSGGQRQRIAIARALILKPSLIILD 450
Query: 515 EATSALDTHTENLVRQALSRLMQGR--TTIVIAHRISTIIEADH-IIFIEDGKVSESGD 570
E TS+LD + + L L Q + I+H + + H +I + G+V E GD
Sbjct: 451 EPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGD 509
Score = 55.1 bits (133), Expect = 6e-08
Identities = 65/247 (26%), Positives = 111/247 (44%), Gaps = 46/247 (18%)
Query: 359 FFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPS------SGSIEI 412
F + V++ ++L ++G+ ALVG SGSGKS ++R+ PS SG I
Sbjct: 15 FRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL-PSPPVVYPSGDIRF 73
Query: 413 DGINIRDITFSSLR----ERISYVGQDVFLFSNTVR------YNIL-IGRPMATEE---E 458
G ++ + +LR +I+ + Q+ + N + Y +L + R M E E
Sbjct: 74 HGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGE 133
Query: 459 MIE------IAKSANA-HDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHIL 511
++ I ++A D+ P LSGG++QR+ IA A+L +L
Sbjct: 134 ILNCLDRVGIRQAAKRLTDY----PH-----------QLSGGERQRVMIAMALLTRPELL 178
Query: 512 VLDEATSALDTHTENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSES 568
+ DE T+ALD + + Q L L Q + I H +S + + AD + +++G+ E
Sbjct: 179 IADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQ 238
Query: 569 GDQKYLL 575
L
Sbjct: 239 NRAATLF 245
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 77.5 bits (190), Expect = 1e-14
Identities = 65/240 (27%), Positives = 115/240 (47%), Gaps = 22/240 (9%)
Query: 355 FRDVFFSYKQGHPVLS----GINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSI 410
F V ++Y+ P S I+L K G TAL+G +GSGKST++ L + P+ G +
Sbjct: 4 FEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKV 63
Query: 411 EIDGINIRDIT----FSSLRERISYVGQ--DVFLFSNTVRYNILIGRPM---ATEEEMIE 461
+ I + + +R+++ V Q + LF TV ++ G P +E+ +
Sbjct: 64 TVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFG-PQNFGIPKEKAEK 122
Query: 462 IAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD 521
IA + + D + ++ LSGGQ +R+AIA + + +LVLDE T+ LD
Sbjct: 123 IAAEK------LEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
Query: 522 THTENLVRQALSRLMQ-GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKD 579
+ Q + Q G+T +++ H + + + AD++ +E G + G + Q+ D
Sbjct: 177 PKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVD 236
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc.
Length = 302
Score = 77.0 bits (190), Expect = 1e-14
Identities = 52/204 (25%), Positives = 99/204 (48%), Gaps = 13/204 (6%)
Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINI-RDITFSSL 425
+ G+N + G++ +GP+G+GK+T I +L + P+SG+ + G ++ R+ +
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREP--RKV 64
Query: 426 RERISYVGQDVFLFSN-TVRYNI-LIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYV 483
R I V Q + + T R N+ ++GR ++ E ++ + L + D V
Sbjct: 65 RRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAE-ERAEELLELF-ELGEAADRPV 122
Query: 484 GENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ-GRTTI 542
G SGG ++R+ IA +++ +L LDE T+ LD T + + L + G T +
Sbjct: 123 G----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTIL 178
Query: 543 VIAHRISTIIE-ADHIIFIEDGKV 565
+ H + + D I I+ G++
Sbjct: 179 LTTHYMEEADKLCDRIAIIDHGRI 202
>gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 77.0 bits (190), Expect = 1e-14
Identities = 66/206 (32%), Positives = 105/206 (50%), Gaps = 17/206 (8%)
Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRER 428
LSG L G++ ALVG +G+GKST++ +L +Y +GSI G +++TF+ +
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLG---KEVTFNGPKSS 76
Query: 429 ----ISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFI---MSLPQGYD 480
I + Q++ L T+ NI +GR I+ K D + ++L D
Sbjct: 77 QEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSD 136
Query: 481 TYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSAL-DTHTENLVRQALSRLMQGR 539
VGE LS G++Q + IA+ + + ++++DE T AL DT TE+L R QGR
Sbjct: 137 KLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGR 192
Query: 540 TTIVIAHRISTIIE-ADHIIFIEDGK 564
+ I+HR+ I E D + DG+
Sbjct: 193 GIVYISHRLKEIFEICDDVTVFRDGQ 218
Score = 37.7 bits (88), Expect = 0.010
Identities = 25/94 (26%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 489 NLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ-GRTTIVIAHR 547
LSGG +Q++AIAR ++ +L+LDE T +D + + Q +++ G + I+++
Sbjct: 395 LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSE 454
Query: 548 ISTII-EADHIIFIEDGKVS-----ESGDQKYLL 575
+ ++ +D I+ + +G++S E Q+ L+
Sbjct: 455 MPEVLGMSDRILVMHEGRISGEFTREQATQEKLM 488
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 77.0 bits (189), Expect = 1e-14
Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 15/243 (6%)
Query: 357 DVF-----FSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIE 411
DVF + Y +L I + + + ++GPSGSGKST++ +L R+ + I+
Sbjct: 9 DVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIK 68
Query: 412 IDGI------NIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATE--EEMIEIA 463
+DG +I I LR+ + V Q F + Y+ I P+ + +E EI
Sbjct: 69 VDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDN-IAYPLKSHGIKEKREIK 127
Query: 464 KSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTH 523
K + L + + S LSGGQ+QR+ IARA+ +L++DE TS +D
Sbjct: 128 KIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIV 187
Query: 524 TENLVRQALSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKDGSL 582
+ + ++ L ++++H + AD++ F+ +G++ E G + L
Sbjct: 188 NSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNEL 247
Query: 583 YKK 585
+K
Sbjct: 248 TEK 250
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 76.7 bits (189), Expect = 2e-14
Identities = 56/211 (26%), Positives = 98/211 (46%), Gaps = 36/211 (17%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427
++ I+L + L+GP+G+GKST++ ++ + P+SG I DG T L +
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG---HPWTRKDLHK 71
Query: 428 RISYVGQDVFLFSN-TVRYNI-----LIGRPMATEEEMIEIAKSAN-----AHDFIMSLP 476
I + + L+ N T R N+ L+G P + +E++ I N A F +
Sbjct: 72 -IGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSL--- 127
Query: 477 QGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM 536
G KQR+ IA A+L +L+LDE T+ LD +R+ +
Sbjct: 128 ----------------GMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFP 171
Query: 537 QGRTTIVIAHRISTIIE--ADHIIFIEDGKV 565
+ T++++ I + ++ ADHI I +G +
Sbjct: 172 EQGITVILSSHILSEVQQLADHIGIISEGVL 202
>gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 76.6 bits (189), Expect = 2e-14
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 15/193 (7%)
Query: 364 QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFS 423
Q VL+ ++L KSG+ AL+G SG GKST+ LL+ + PS G++ G + + +
Sbjct: 23 QHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82
Query: 424 ---SLRERISYVGQDVFLFSN---TVRYNILIGRPMATEEEMIEIAKSANAHDFI--MSL 475
+ R I V QD N TVR +I P+ + + + A A + + + L
Sbjct: 83 QRKAFRRDIQMVFQDSISAVNPRKTVRE--IIREPLRHLLSLDKAERLARASEMLRAVDL 140
Query: 476 PQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRL 535
D+ + + LSGGQ QR+ +ARA+ + +L+LDEA S LD + V + L +L
Sbjct: 141 D---DSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKL 197
Query: 536 MQGRTT--IVIAH 546
Q T + I H
Sbjct: 198 QQQFGTACLFITH 210
>gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 76.3 bits (188), Expect = 2e-14
Identities = 69/238 (28%), Positives = 113/238 (47%), Gaps = 26/238 (10%)
Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGI 415
R V F+ + + I+L GK+TA++GPSG GK+T++ L+ P G I DG
Sbjct: 11 RGVSFT-RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGE 69
Query: 416 NIRDITFSSL---RERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIE-IAKSANAHD 470
NI ++ S L R+R+S + Q LF++ V N + P+ ++ + S
Sbjct: 70 NIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDN--VAYPLREHTQLPAPLLHST---- 123
Query: 471 FIMSLPQGYDTYVGENG------SNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHT 524
+M L VG G S LSGG +R A+ARA+ + +++ DE D T
Sbjct: 124 VMMKLEA-----VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT 178
Query: 525 ENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKD 579
++ + +S L G T +V++H + ++ ADH + D K+ G + L D
Sbjct: 179 MGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPD 236
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 76.2 bits (187), Expect = 2e-14
Identities = 59/207 (28%), Positives = 99/207 (47%), Gaps = 8/207 (3%)
Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD-----PSSGSIEIDGINIRDITFS 423
L+ IN+ +TAL+GPSG GKST + L RM D G++ +G NI F
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 424 --SLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDT 481
LR +I V Q F ++ NI G + ++ ++ + +L
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKD 142
Query: 482 YVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTT 541
+ N +LSGGQ+QR+ IAR + + +++++DE TSALD + + + + L + T
Sbjct: 143 KLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTI 202
Query: 542 IVIAHRISTIIE-ADHIIFIEDGKVSE 567
I++ H + +D F +G + E
Sbjct: 203 IIVTHNMQQAGRISDRTAFFLNGCIEE 229
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 75.3 bits (185), Expect = 4e-14
Identities = 67/247 (27%), Positives = 115/247 (46%), Gaps = 25/247 (10%)
Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPS-----SGSI 410
++ Y H V+ G++L + AL+GPSG GKST++ R+ + + G +
Sbjct: 8 VNLRVYYGSNH-VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEV 66
Query: 411 EIDGINI--RDITFSSLRERISYVGQDVFLFSN-TVRYNILIG-------RPMATEEEMI 460
+ G NI D+ +R + V Q F + T+ N+ IG + +E +
Sbjct: 67 RLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERV 126
Query: 461 EIA-KSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSA 519
E A K A D + Y SNLSGGQ+QR+ IARA+ IL++DE T+
Sbjct: 127 EWALKKAALWDEVKDRLNDY-------PSNLSGGQRQRLVIARALAMKPKILLMDEPTAN 179
Query: 520 LDTHTENLVRQALSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQK 578
+D + + L L + T +++ H + +D++ F+ GK+ E G + + +
Sbjct: 180 IDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENP 239
Query: 579 DGSLYKK 585
+ L +K
Sbjct: 240 EHELTEK 246
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2.
Length = 520
Score = 75.2 bits (185), Expect = 5e-14
Identities = 63/252 (25%), Positives = 113/252 (44%), Gaps = 57/252 (22%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLL--MRMYDPSSGSI------------ 410
G VL I+ + G++ ++G SG+GKS ++++L M Y+P+SG I
Sbjct: 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGY 71
Query: 411 ---------------------EIDGINIRDITFSSLRERISYVGQDVF-LFSN-TVRYNI 447
E+D N+ D +R+RI+ + Q F L+ + TV N+
Sbjct: 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNV 131
Query: 448 L-----IGRPMATEEEM-IEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIA 501
L IG +++ + I + + +LSGG+KQR+ +A
Sbjct: 132 LEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIAR-----------DLSGGEKQRVVLA 180
Query: 502 RAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHII 558
R + ++ + + DE T LD T LV AL ++ G + ++ +H I + +D I
Sbjct: 181 RQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAI 240
Query: 559 FIEDGKVSESGD 570
++E+G++ E G
Sbjct: 241 WLENGEIKEEGT 252
Score = 66.4 bits (162), Expect = 2e-11
Identities = 51/224 (22%), Positives = 113/224 (50%), Gaps = 24/224 (10%)
Query: 371 GINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI----DGINIRDITFSSLR 426
++L K G++ +VG SG+GK+T+ ++ + +P+SG + + + +++
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361
Query: 427 ERISYVG---QDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQ-GYDT 481
Y+G Q+ L+ + TV N+ TE +E+ +++L G+D
Sbjct: 362 RAKRYIGILHQEYDLYPHRTVLDNL-------TEAIGLELPDELARMKAVITLKMVGFDE 414
Query: 482 YVGEN-----GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL--SR 534
E LS G++ R+A+A+ ++++ I++LDE T +D T+ V ++ +R
Sbjct: 415 EKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAR 474
Query: 535 LMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQ 577
+T I+++H + +++ D + DGK+ + GD + ++++
Sbjct: 475 EEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVEE 518
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 75.2 bits (185), Expect = 5e-14
Identities = 58/198 (29%), Positives = 94/198 (47%), Gaps = 21/198 (10%)
Query: 362 YKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD--PS---SGSIEIDGIN 416
Y + + L ++TA +GPSG GKSTI+ R+ D P G + G N
Sbjct: 19 YYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKN 78
Query: 417 I--RDITFSSLRERISYVGQDVFLFSNTVRYNILIG-RPMATEEEMIEIAKSANAHDFIM 473
+ D+ +R RI V Q F ++ NI G R + +M E+ +
Sbjct: 79 LYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVER-------- 130
Query: 474 SLPQG--YDTY---VGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528
SL Q +D + ++G +LSGGQ+QR+ IARA+ ++++DE SALD + +
Sbjct: 131 SLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRI 190
Query: 529 RQALSRLMQGRTTIVIAH 546
+ + L + T I++ H
Sbjct: 191 EELMHELKEQYTIIIVTH 208
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 75.1 bits (184), Expect = 5e-14
Identities = 61/203 (30%), Positives = 99/203 (48%), Gaps = 14/203 (6%)
Query: 356 RDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD-----PSSGSI 410
+D+ F Y + GI++ K+TA++GPSG GKST I L R+ + G +
Sbjct: 11 KDLSFYYNTSKAI-EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVV 69
Query: 411 EIDGINIRD--ITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMA---TEEEMIEIAKS 465
+ G NI D I + LR +I V Q F ++ N+ G ++ + ++ EI +S
Sbjct: 70 DFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVES 129
Query: 466 ANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTE 525
A +L Q + ++ LSGGQ+QR+ IARA+ +L++DE SALD
Sbjct: 130 ALKG---AALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIAT 186
Query: 526 NLVRQALSRLMQGRTTIVIAHRI 548
V + + L T ++ H +
Sbjct: 187 MKVEELIHSLRSELTIAIVTHNM 209
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 74.7 bits (183), Expect = 7e-14
Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 360 FSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSS-----GSIEIDG 414
F Y +L G+++ K+TA++GPSG GKST + L RM + S G +E
Sbjct: 15 FYYDT-QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73
Query: 415 INI--RDITFSSLRERISYVGQDVFLFSNTVRYNILIG------RPMATEEEMIEIA-KS 465
NI R + + LR ++S V LF +V N+ G RP ++++E A K
Sbjct: 74 QNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKD 133
Query: 466 ANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD---- 521
A+ D I + ++ +LSGGQ+QR+ IARA+ +L++DE LD
Sbjct: 134 ADLWDEIKH-------KIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIAS 186
Query: 522 THTENLVRQALSRLMQGRTTIVIAHRISTI 551
E+L++ RL T ++++H + +
Sbjct: 187 MKVESLIQSL--RLRSELTMVIVSHNLHQV 214
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 74.3 bits (182), Expect = 9e-14
Identities = 65/221 (29%), Positives = 107/221 (48%), Gaps = 14/221 (6%)
Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG-- 414
D++F Y Q PVL G+NL F +T LVG +G GKST+ L + P G++ G
Sbjct: 6 DLWFRY-QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKP 64
Query: 415 INIRDITFSSLRERISYVGQD--VFLFSNTVRYNILIG-RPMATEEEMIEIAKSANAHDF 471
++ +LR++++ V QD +F + +I R + E EI + D
Sbjct: 65 LDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEA--EITRRV---DE 119
Query: 472 IMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQA 531
++L + + LS GQK+R+AIA A++ L+LDE T+ LD +
Sbjct: 120 ALTLVDA-QHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAI 178
Query: 532 LSRLM-QGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570
+ R++ QG I+ +H I I E +D + + G++ G
Sbjct: 179 IRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGA 219
>gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 73.8 bits (181), Expect = 1e-13
Identities = 65/217 (29%), Positives = 114/217 (52%), Gaps = 27/217 (12%)
Query: 364 QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG------INI 417
Q +L+G+ G++ A++GPSGSGKST++N L +G I+ + N
Sbjct: 79 QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNAL-------AGRIQGNNFTGTILANN 131
Query: 418 RDITFSSLRERISYVGQDVFLFSN-TVRYNI----LIGRPMA-TEEEMIEIAKSANAHDF 471
R T L+ R +V QD L+ + TVR + L+ P + T++E I +A+S +
Sbjct: 132 RKPTKQILK-RTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISE-- 188
Query: 472 IMSLPQGYDTYVGENG-SNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQ 530
+ L + +T +G + +SGG+++R++IA ML + +L+LDE TS LD +
Sbjct: 189 -LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVL 247
Query: 531 ALSRLMQ-GRTTIVIAHRISTIIEA--DHIIFIEDGK 564
L L Q G+T + H+ S+ + D ++ + +G+
Sbjct: 248 TLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGR 284
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 73.6 bits (181), Expect = 1e-13
Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 28/158 (17%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427
VLS ++L K GK+ L+GP+G+GKST++ +++ + P G I+ +G +
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KL 67
Query: 428 RISYVGQDVFLFSN---TV-RYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYV 483
RI YV Q ++L + TV R+ L RP +E+++ K A I + Q
Sbjct: 68 RIGYVPQKLYLDTTLPLTVNRFLRL--RPGTKKEDILPALKRVQAGHLIDAPMQ------ 119
Query: 484 GENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD 521
LSGG+ QR+ +ARA+L +LVLDE T +D
Sbjct: 120 -----KLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 73.7 bits (181), Expect = 1e-13
Identities = 58/220 (26%), Positives = 105/220 (47%), Gaps = 26/220 (11%)
Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFS-SLRE 427
L +NL G++ AL+G +G+GKST++ +L +++P+ G+I I+ IN + + +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 428 RISYVGQDVFLFSN-TVRYNILIGR---------PMATEEEMIEIAKSANAHDFIMSLPQ 477
I + Q++ + TV N+ IGR + EM A +M L
Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAA-------MMLLRV 133
Query: 478 GYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSAL-DTHTENL---VRQALS 533
G + E +NLS KQ + IA+ ++ D ++++DE TS+L + + L + Q
Sbjct: 134 GLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK 193
Query: 534 RLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQK 572
+G + I+H+++ I D ++DG SG
Sbjct: 194 ---EGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230
Score = 42.5 bits (100), Expect = 3e-04
Identities = 43/212 (20%), Positives = 101/212 (47%), Gaps = 20/212 (9%)
Query: 372 INLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT-FSSLRERIS 430
I+ G++ G GSG++ ++N L + + G I ++G +I + ++++ ++
Sbjct: 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341
Query: 431 YVGQ---DVFLFSN-TVRYNILIGR---------PMATEEEMIEIAKSANAHDFIMSLPQ 477
Y+ + D F N ++ N+ I R M E+ E ++A +++L
Sbjct: 342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-QRTAENQRELLALKC 400
Query: 478 GYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM- 536
V +N + LSGG +Q++ I++ + +++ DE T +D + + + + +L
Sbjct: 401 ---HSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD 457
Query: 537 QGRTTIVIAHRISTIIEA-DHIIFIEDGKVSE 567
G+ ++++ + II D I +G++++
Sbjct: 458 DGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 72.9 bits (179), Expect = 2e-13
Identities = 58/208 (27%), Positives = 99/208 (47%), Gaps = 38/208 (18%)
Query: 352 TTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIE 411
T V +V FS +G +M A+VG SGSGKST+++LL + P+SG +
Sbjct: 22 TDVLHNVSFSIGEG--------------EMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVI 67
Query: 412 IDGINIRDITFSS---LRER-ISYVGQDVFLFSN-----TVRYNILIG--RPMATEEEMI 460
+G + ++ ++ LR + + ++ Q L + V +LIG +P +
Sbjct: 68 FNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRAL 127
Query: 461 EIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSAL 520
E+ + G + S LSGG++QR+AIARA++ + +++ DE T L
Sbjct: 128 EMLAAV-----------GLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNL 176
Query: 521 DTHTENLVRQALSRL--MQGRTTIVIAH 546
D + + Q L L +QG +V+ H
Sbjct: 177 DARNADSIFQLLGELNRLQGTAFLVVTH 204
>gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 72.2 bits (177), Expect = 3e-13
Identities = 70/225 (31%), Positives = 108/225 (48%), Gaps = 46/225 (20%)
Query: 378 SGKMTALVGPSGSGKSTIINLLMRMYD--PS---SGSIEIDGINIRDITFSS---LRERI 429
S +TA++GPSG GKST + + RM D PS +G++ DG +I F+ LR++I
Sbjct: 64 SKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG-KFTDEVLLRKKI 122
Query: 430 SYVGQDVFLFSNTVRYNILIG------RPMATEEEMIE--IAKSANAHDFIMSLPQGYDT 481
V Q F ++ NI G EE++E + K+A L
Sbjct: 123 GMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAA--------LWDEVSD 174
Query: 482 YVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHT----ENLVRQALSRLMQ 537
+ +N LSGGQ+QR+ +AR + + IL+LDE TSALD E+L+++ ++
Sbjct: 175 RLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQE-----LR 229
Query: 538 GRTTIVI-------AHRISTIIEADHIIFIEDGKVSESGDQKYLL 575
G TI+I A R+S D+ +F +G + E L
Sbjct: 230 GSYTIMIVTHNMQQASRVS-----DYTMFFYEGVLVEHAPTAQLF 269
>gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines.
Length = 382
Score = 72.1 bits (177), Expect = 4e-13
Identities = 68/218 (31%), Positives = 103/218 (47%), Gaps = 31/218 (14%)
Query: 371 GINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI-DGINIRDI------TFS 423
+L + G++ L+G SGSGKS+++ + + S GS+ + DG D+ T
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLR 101
Query: 424 SLR-ERISYVGQDVFLFS-NTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDT 481
LR R+S V Q L TV N+ G M E E K + ++ L Q D
Sbjct: 102 RLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEA-ERRKRVDEQLELVGLAQWADK 160
Query: 482 YVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALS-RLMQ--- 537
GE LSGG +QR+ +ARA D IL++DE SALD L+R L L++
Sbjct: 161 KPGE----LSGGMQQRVGLARAFAMDADILLMDEPFSALDP----LIRTQLQDELLELQA 212
Query: 538 --GRTTIVIAHRISTIIEA----DHIIFIEDGKVSESG 569
+T I ++H + EA + I +E G++ + G
Sbjct: 213 KLNKTIIFVSHDLD---EALKIGNRIAIMEGGRIIQHG 247
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 71.8 bits (176), Expect = 4e-13
Identities = 47/158 (29%), Positives = 86/158 (54%), Gaps = 8/158 (5%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424
G + ++L G++ AL+G SG GKST++ +L P++G I +DG+++ +
Sbjct: 31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV--PP 88
Query: 425 LRERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYV 483
+ I+ + Q LF + TV NI G +++ + A+ A+ + ++ L + +
Sbjct: 89 YQRPINMMFQSYALFPHMTVEQNIAFG----LKQDKLPKAEIASRVNEMLGLVHMQE-FA 143
Query: 484 GENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD 521
LSGGQ+QR+A+AR++ + +L+LDE ALD
Sbjct: 144 KRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181
>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein.
Length = 1394
Score = 71.7 bits (176), Expect = 5e-13
Identities = 79/328 (24%), Positives = 142/328 (43%), Gaps = 53/328 (16%)
Query: 268 GLSIAGIILFSG----FLMSKKGTSNAGEIMSFI-TALLMAYEPAKRIARTRIILEGGMV 322
G+ I + F KG GEI+ F +L A + + A + +E G V
Sbjct: 673 GIIIGFTVFFFFVYILLTEFNKGAKQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEV 732
Query: 323 GVRCMFSLLDHPIMIEESPHAVNLPVGKGTTVF--RDVFFS--YKQGHPV-LSGINLCFK 377
D ++ ++ G +F R++ + K+ V L+ ++ K
Sbjct: 733 -----LGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVK 787
Query: 378 SGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINI-----RDITFSSLRERISYV 432
G +TAL+G SG+GK+T++N+L +G I G + D +F I YV
Sbjct: 788 PGTLTALMGASGAGKTTLLNVLAERVT--TGVIT-GGDRLVNGRPLDSSFQ---RSIGYV 841
Query: 433 GQ-DVFLFSNTVR----YNILIGRP--------MATEEEMIEIAKSANAHDFIMSLPQGY 479
Q D+ L ++TVR ++ + +P M EE+I+ ++ +
Sbjct: 842 QQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIK----------LLEMESYA 891
Query: 480 DTYVGENGSNLSGGQKQRIAIARAMLRDGHILV-LDEATSALDTHTENLVRQALSRLMQ- 537
D VG G L+ Q++R+ I ++ +L+ LDE TS LD+ T + + + +L
Sbjct: 892 DAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH 951
Query: 538 GRTTIVIAHRISTII--EADHIIFIEDG 563
G+ + H+ S I+ E D ++ ++ G
Sbjct: 952 GQAILCTIHQPSAILFEEFDRLLLLQKG 979
Score = 55.9 bits (135), Expect = 3e-08
Identities = 59/236 (25%), Positives = 93/236 (39%), Gaps = 22/236 (9%)
Query: 307 AKRIARTRIILEGGMVGVRCMFSLLDHPIMI--EESPHAVNLPVGKGTTVFRDVFFSYKQ 364
K I I + +GV +L + + + P N + T FR +
Sbjct: 13 RKLIDSDPIYYKPYKLGV-AYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDT 71
Query: 365 GH-PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPS----SGSIEIDGINIRD 419
+L ++ K G++T ++G GSG ST++ + D G I DGI +
Sbjct: 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEE 131
Query: 420 ITFSSLRERISYVGQ-DVFLFSNTV--------RYNILIGRPMA-TEEEMIEIAKSANAH 469
I R + Y + DV TV R RP + EE + A+ +
Sbjct: 132 IK-KHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAK--HIADVY 188
Query: 470 DFIMSLPQGYDTYVGENG-SNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHT 524
L +T VG + +SGG+++R++IA A L I D AT LD+ T
Sbjct: 189 MATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSAT 244
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 71.5 bits (176), Expect = 6e-13
Identities = 56/210 (26%), Positives = 104/210 (49%), Gaps = 24/210 (11%)
Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPS---SGSIEIDGINIRDITFSSL 425
L ++L ++G++ +L G +G+GKST++ +L +Y P G I +G ++ S++
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEG---EELQASNI 76
Query: 426 RER----ISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYD 480
R+ I+ + Q++ L +V NI +G + M A A + L D
Sbjct: 77 RDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQL--KLD 134
Query: 481 TYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTE-----NLVRQALSRL 535
NL GQ+Q + IA+A+ + +L+LDE T++L T +E +++R +
Sbjct: 135 INPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL-TESETAVLLDIIRDLKAH- 192
Query: 536 MQGRTTIVIAHRISTIIE-ADHIIFIEDGK 564
G I I+H+++ + +D I I DG+
Sbjct: 193 --GIACIYISHKLNEVKAISDTICVIRDGR 220
Score = 36.4 bits (85), Expect = 0.023
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 488 SNLSGGQKQRIAIARAMLRDGHILVLDEATSALD 521
+ LSGG +Q+ +A+ +L + IL+LDE T +D
Sbjct: 404 ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 70.5 bits (173), Expect = 1e-12
Identities = 55/190 (28%), Positives = 99/190 (52%), Gaps = 22/190 (11%)
Query: 372 INLCFKSGKMTALVGPSGSGKSTIINLLMRMYD--PSS---GSIEIDGINI--RDITFSS 424
+NL + +TA +GPSG GKST++ L RM++ P + G + +DG ++ + +
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 425 LRERISYVGQDVFLF-SNTVRYNILIG------RPMATEEEMIEIA-KSANAHDFIMSLP 476
+R I V Q F + ++R N++ G R +E++E + + AN + +
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD-- 140
Query: 477 QGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM 536
+ + G LSGGQ+QR+ IARA+ + +L++DE SALD + + ++ L
Sbjct: 141 -----RLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK 195
Query: 537 QGRTTIVIAH 546
Q T +++ H
Sbjct: 196 QDYTIVIVTH 205
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown.
Length = 223
Score = 70.3 bits (172), Expect = 1e-12
Identities = 52/203 (25%), Positives = 96/203 (47%), Gaps = 26/203 (12%)
Query: 379 GKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQD--- 435
G++ L+GP+G+GK+T++ ++ + P+ G++++ G + I YV Q
Sbjct: 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEF 60
Query: 436 VFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFI--------MSLPQGYDTYVGENG 487
+ F +V + ++ GR I + DF + L + D VGE
Sbjct: 61 AWDFPISVAHTVMSGR-----TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE-- 113
Query: 488 SNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIA-H 546
LSGGQ+QR+ +ARA+ +L+LDE + LD T+ L+ + L T I++ H
Sbjct: 114 --LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171
Query: 547 RISTIIEADHIIFIEDGKVSESG 569
++ + + + +G+V G
Sbjct: 172 DLAQAMATCDRVVLLNGRVIADG 194
>gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PubMed:12554644) or associated with the
membrane (PubMed:11943156). The SUF system also includes
a cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA.
Length = 243
Score = 70.0 bits (172), Expect = 2e-12
Identities = 59/221 (26%), Positives = 108/221 (48%), Gaps = 23/221 (10%)
Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLM--RMYDPSSGSIEIDGINIRDIT--- 421
+L G+NL K G++ A++GP+GSGKST+ + Y+ +SG+I G ++ ++
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDE 73
Query: 422 ------FSSLR--ERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIM 473
F + + E I V FL S N ++++ K A ++
Sbjct: 74 RARAGLFLAFQYPEEIPGVSNLEFLRSA---LNARRSARGEEPLDLLDFLKLLKAKLALL 130
Query: 474 SLPQGY-DTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL 532
+ + + + V E SGG+K+R I + L + + +LDE S LD +V + +
Sbjct: 131 GMDEEFLNRSVNE---GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGI 187
Query: 533 SRLM-QGRTTIVIAH--RISTIIEADHIIFIEDGKVSESGD 570
+RL R+ ++I H R+ I+ D++ + DG++ +SGD
Sbjct: 188 NRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 69.7 bits (170), Expect = 2e-12
Identities = 60/221 (27%), Positives = 104/221 (47%), Gaps = 23/221 (10%)
Query: 357 DVFFSYKQGHPV--LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
++ F Y++ V L+G++ G+ +++G +GSGKST L+ +++ G ++IDG
Sbjct: 9 NLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDG 68
Query: 415 INIRDITFSSLRERISYVGQ--DVFLFSNTVRYNILIGRPMA--TEEEMIEIAKSA---- 466
+ +LR +I V Q D TV ++ G EEMI+ A
Sbjct: 69 ELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAV 128
Query: 467 NAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTEN 526
N DF P + LSGGQKQR+A+A + I++LDE+TS LD
Sbjct: 129 NMLDFKTREP-----------ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQ 177
Query: 527 LVRQALSRLMQGR--TTIVIAHRISTIIEADHIIFIEDGKV 565
+ + + + + T + I H + +D I+ ++ G++
Sbjct: 178 EIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEI 218
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 69.6 bits (170), Expect = 2e-12
Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 16/230 (6%)
Query: 357 DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYD-----PSSGSIE 411
++++ KQ L +++ +TAL+GPSG GKST I L RM D G +
Sbjct: 19 NLWYGEKQA---LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVS 75
Query: 412 IDGINI--RDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPM--ATEEEMIEIAKSAN 467
I+G +I D+ LR+ + V Q F ++ N+ G + A ++++ + ++A
Sbjct: 76 IEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENAL 135
Query: 468 AHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENL 527
+L + +LSGGQ+QR+ IAR + I++ DE TSALD +
Sbjct: 136 RS---AALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTAR 192
Query: 528 VRQALSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQ 576
+ + L + T +++ H + +D+ F G++ E G + +
Sbjct: 193 IEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 69.1 bits (169), Expect = 3e-12
Identities = 66/207 (31%), Positives = 103/207 (49%), Gaps = 20/207 (9%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
F V +Y G L G+ + G+M L G SG+GKST++ L+ + PS+G I G
Sbjct: 4 FEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSG 63
Query: 415 INI-----RDITFSSLRERISYVGQD-VFLFSNTVRYNILIGRPMA-TEEEMIEIAKSAN 467
+I R++ F LR +I + QD L TV N+ I +A + I SA
Sbjct: 64 HDITRLKNREVPF--LRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSA- 120
Query: 468 AHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTH-TEN 526
A D + L + + + LSGG++QR+ IARA++ +L+ DE T LD +E
Sbjct: 121 ALDKVGLLDKAKNFPI-----QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEG 175
Query: 527 LVR--QALSRLMQGRTTIVIAHRISTI 551
++R + +R+ G T ++ H I I
Sbjct: 176 ILRLFEEFNRV--GVTVLMATHDIGLI 200
>gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 68.9 bits (168), Expect = 3e-12
Identities = 58/200 (29%), Positives = 95/200 (47%), Gaps = 21/200 (10%)
Query: 362 YKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG-INIRD- 419
+ G L ++L + K+ A +GPSG GKST++ RM D G+ +++G + RD
Sbjct: 29 FYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGA-KVEGRLLYRDR 87
Query: 420 ------ITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATE-----EEMIEIAKSANA 468
I LR ++ V Q F ++ NI P A +E++E + A
Sbjct: 88 NIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFA-PRANGYKGNLDELVEDSLRRAA 146
Query: 469 HDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528
+ + + E G+ LSGGQ+QR+ IARA+ +L++DE SALD + V
Sbjct: 147 ------IWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQV 200
Query: 529 RQALSRLMQGRTTIVIAHRI 548
+ L + T I++ H +
Sbjct: 201 EELCLELKEQYTIIMVTHNM 220
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 68.7 bits (169), Expect = 4e-12
Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 44/179 (24%)
Query: 385 VGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQ---------- 434
VGP+G GK+T LL + P G ++ + +ISY Q
Sbjct: 371 VGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISYKPQYIKPDYDGTV 417
Query: 435 DVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQ 494
+ L S T + EI K + L + D V + LSGG+
Sbjct: 418 EDLLRSITDDLG--------SSYYKSEIIKP-------LQLERLLDKNVKD----LSGGE 458
Query: 495 KQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGR--TTIVIAHRISTI 551
QR+AIA + RD + +LDE ++ LD V +A+ R+ + R T +V+ H I I
Sbjct: 459 LQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMI 517
Score = 57.1 bits (139), Expect = 1e-08
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 12/65 (18%)
Query: 488 SNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQ------ALSRLMQGRTT 541
S LSGG+ QR+AIA A+LRD DE TS LD +RQ + L +G+
Sbjct: 211 SELSGGELQRVAIAAALLRDADFYFFDEPTSYLD------IRQRLNVARLIRELAEGKYV 264
Query: 542 IVIAH 546
+V+ H
Sbjct: 265 LVVEH 269
Score = 34.8 bits (81), Expect = 0.066
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 377 KSGKMTALVGPSGSGKSTIINLL 399
K GK+T ++GP+G GK+T + +L
Sbjct: 97 KEGKVTGILGPNGIGKTTAVKIL 119
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 66.7 bits (163), Expect = 2e-11
Identities = 59/231 (25%), Positives = 112/231 (48%), Gaps = 37/231 (16%)
Query: 364 QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLM--RMYDPSSGSIEIDGINIRDIT 421
+ +L G+NL + G++ A++GP+GSGKST+ L Y+ + G++E G +D+
Sbjct: 12 EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG---KDLL 68
Query: 422 FSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSA-------------NA 468
S +R G+ +F+ +Y + I P + + ++ A +A +
Sbjct: 69 ELSPEDR---AGEGIFM---AFQYPVEI--PGVSNQFFLQTALNAVRSYRGQEPLDRFDF 120
Query: 469 HDFI------MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDT 522
D + + +P+ T G SGG+K+R I + + + + +LDE+ S LD
Sbjct: 121 QDLMEEKIALLKMPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDESDSGLDI 178
Query: 523 HTENLVRQALSRLMQG-RTTIVIAH--RISTIIEADHIIFIEDGKVSESGD 570
+V ++ L G R+ I++ H RI I+ D++ + G++ +SGD
Sbjct: 179 DALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229
>gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 66.1 bits (162), Expect = 2e-11
Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 21/206 (10%)
Query: 376 FKSGKMTALVGPSGSGKSTIINLLMRMYD--PSSGSIEIDGINIRDITFSSLRERISYVG 433
++G++ LVGP+G+GKST LL RM P SGSI+ G + + + L +Y+
Sbjct: 19 VRAGEILHLVGPNGAGKST---LLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLS 75
Query: 434 QDVF-LFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSG 492
Q F+ V + + +P T E + A + A G D +G + + LSG
Sbjct: 76 QQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEAL------GLDDKLGRSVNQLSG 129
Query: 493 GQKQRIAIARAMLR-------DGHILVLDEATSALDTHTENLVRQALSRL-MQGRTTIVI 544
G+ QR+ +A +L+ G +L+LDE ++LD + + + LS L QG ++
Sbjct: 130 GEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMS 189
Query: 545 AHRIS-TIIEADHIIFIEDGKVSESG 569
+H ++ T+ AD + ++ GK+ SG
Sbjct: 190 SHDLNHTLRHADRVWLLKQGKLLASG 215
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 66.0 bits (161), Expect = 2e-11
Identities = 70/252 (27%), Positives = 102/252 (40%), Gaps = 57/252 (22%)
Query: 353 TVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPS------ 406
V R +L ++L + G++TAL+G +G+GKST++ L
Sbjct: 8 HVARR-------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGA 60
Query: 407 --SGSIEIDGINIRDI---TFSSLRERISYVGQDVFLFSNTVRYNILIGR-PMA-----T 455
+G + ++G + I + LR + Q F FS R +L+GR P A
Sbjct: 61 RVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFS--AREIVLLGRYPHARRAGAL 118
Query: 456 EEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAM---------LR 506
EIA A A G VG + + LSGG+ R+ AR + +
Sbjct: 119 THRDGEIAWQALAL-------AGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQ 171
Query: 507 DGHILVLDEATSALD-THTENL---VRQALSRLMQ-GRTTIV----IAHRISTIIEADHI 557
L+LDE T+ALD H L VR L+R G IV +A R AD I
Sbjct: 172 PPRYLLLDEPTAALDLAHQHRLLDTVR-RLARDWNLGVLAIVHDPNLAAR-----HADRI 225
Query: 558 IFIEDGKVSESG 569
+ DG + G
Sbjct: 226 AMLADGAIVAHG 237
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 65.8 bits (160), Expect = 3e-11
Identities = 55/218 (25%), Positives = 94/218 (43%), Gaps = 17/218 (7%)
Query: 373 NLCFKSGKMTALVGPSGSGKSTIINLLMRMYD-----PSSGSIEIDGINI--RDITFSSL 425
++ + ++T +GPSG GKST++ L RM D G + G ++ + + +
Sbjct: 28 HVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVV 87
Query: 426 RERISYVGQDVFLFSNTVRYNILIG----RPMATEEEMIEIAKSANAHDFIMSLPQGYDT 481
R I V Q FS ++ N+ G R + ++ A A L
Sbjct: 88 RRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAA------LWDEVKD 141
Query: 482 YVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTT 541
+ +G +LSGGQ+QR+ IARA+ + +L+LDE SALD V + + L + T
Sbjct: 142 KLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTI 201
Query: 542 IVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKD 579
++ H + I +S+ YL++
Sbjct: 202 ALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGP 239
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 65.5 bits (160), Expect = 4e-11
Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 22/208 (10%)
Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRER 428
L +NL + + AL+G +G+GKST++ L +Y SGSI G ++I F S +E
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQG---KEIDFKSSKEA 70
Query: 429 ----ISYVGQDVFLF-SNTVRYNILIGR-----PMATEEEMIEIAKSANAHDFIMSLPQG 478
IS V Q++ L +V N+ +GR +++M K+ I P+
Sbjct: 71 LENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPR- 129
Query: 479 YDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM-Q 537
+ LS Q Q I IA+A + I+++DE TS+L N + + +L +
Sbjct: 130 ------AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER 183
Query: 538 GRTTIVIAHRISTIIE-ADHIIFIEDGK 564
G + I+H++ I + D I + DG+
Sbjct: 184 GCGIVYISHKMEEIFQLCDEITILRDGQ 211
Score = 38.6 bits (90), Expect = 0.005
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 478 GYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ 537
G+ T +G +LSGG +Q++ I R +L IL+LDE T +D + + Q ++ L +
Sbjct: 384 GHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK 439
Query: 538 -GRTTIVIAHRISTIIE-ADHIIFIEDGKVS 566
+ I+I+ + ++ D I+ + +G V+
Sbjct: 440 KDKGIIIISSEMPELLGITDRILVMSNGLVA 470
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 64.0 bits (156), Expect = 1e-10
Identities = 60/233 (25%), Positives = 107/233 (45%), Gaps = 23/233 (9%)
Query: 377 KSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDV 436
+ G+ A++G +GSGKST+ +L M +P+SG + ID + +S +RI + QD
Sbjct: 37 REGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDP 96
Query: 437 FLFSNTVRYNILIGR------PMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNL 490
S ++ I + + T+ E + K + L + +Y L
Sbjct: 97 ---STSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHM---L 150
Query: 491 SGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM------QGRTTIVI 544
+ GQKQR+ +ARA++ +++ DEA ++LD +R L LM QG + I +
Sbjct: 151 APGQKQRLGLARALILRPKVIIADEALASLDMS----MRSQLINLMLELQEKQGISYIYV 206
Query: 545 AHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLENLS 596
+ + +D ++ + G+V E G +L L K++ A E L+
Sbjct: 207 TQHLGMMKHISDQVLVMHQGEVVERGSTADVLASPLHELTKRLIAGHFGEALT 259
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 63.9 bits (156), Expect = 1e-10
Identities = 53/218 (24%), Positives = 99/218 (45%), Gaps = 33/218 (15%)
Query: 371 GINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERIS 430
+NL + ++ +L+GP+G+GK+T+ N L Y P+ G+I + G +I + +I+
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLP----GHQIA 78
Query: 431 YVG-----QDVFLFSN-TVRYNILIGR---------------PMATEEEMIEIAKSANAH 469
+G Q V LF TV N+L+ + P E + ++A
Sbjct: 79 RMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWL 138
Query: 470 DFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVR 529
+ + G + NL+ GQ++R+ IAR M+ IL+LDE + L+ +
Sbjct: 139 ERV-----GLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELD 193
Query: 530 QALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGK 564
+ ++ L T ++I H + ++ +D I + G
Sbjct: 194 ELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 63.7 bits (155), Expect = 1e-10
Identities = 62/257 (24%), Positives = 117/257 (45%), Gaps = 33/257 (12%)
Query: 341 PHAVNLPVGKGTTVFRDVFFSYKQGHPVLSGI-NLCF--KSGKMTALVGPSGSGKSTIIN 397
PH+ L V ++ ++ Q ++ + NL F + G+ A+VG SGSGKS
Sbjct: 2 PHSDELDARDVLAV-ENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTAL 60
Query: 398 LLMRMYDPSSGSIEIDG----------INIRDITFSSLRE----RISYVGQD-------V 436
LMR+ + + G ++ D I + + + + +R ++ + Q+ V
Sbjct: 61 ALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPV 120
Query: 437 FLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQ 496
F + +I + + + EE M+E + + + +P+ T + LSGG +Q
Sbjct: 121 FTVGEQIAESIRLHQGASREEAMVEAKRMLDQ----VRIPEA-QTILSRYPHQLSGGMRQ 175
Query: 497 RIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRT--TIVIAHRISTIIE- 553
R+ IA A+ +L+ DE T+ALD + + Q + L + + I I H + + E
Sbjct: 176 RVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEI 235
Query: 554 ADHIIFIEDGKVSESGD 570
AD ++ + G+ E+G
Sbjct: 236 ADRVLVMYQGEAVETGS 252
Score = 61.4 bits (149), Expect = 6e-10
Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 17/153 (11%)
Query: 379 GKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFS---SLRERISYVGQD 435
G+ +LVG SGSGKST L+R+ + G I +G I ++ +LR I ++ QD
Sbjct: 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 436 VFLF---SNTVRYNIL----IGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGS 488
+ TV +I+ + + + A+ A + + LP+ Y E
Sbjct: 410 PYASLDPRQTVGDSIMEPLRVHGLLPGKAAA---ARVAWLLERVGLLPEHAWRYPHE--- 463
Query: 489 NLSGGQKQRIAIARAMLRDGHILVLDEATSALD 521
SGGQ+QRI IARA+ + +++ DEA SALD
Sbjct: 464 -FSGGQRQRICIARALALNPKVIIADEAVSALD 495
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 63.6 bits (155), Expect = 1e-10
Identities = 55/226 (24%), Positives = 100/226 (44%), Gaps = 36/226 (15%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSL-- 425
L ++ + G++ +GP+G+GKST + ++ P SGS+++ G D+ +
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGE---DVLQNPKEV 73
Query: 426 RERISYVGQ------DVFL-----FSNTVRYNILIGRPMATEEEMIE-IAKSANAHDFIM 473
+ I Y+ + D+++ F + Y + EEMIE + H I
Sbjct: 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGI-YGMKGQLLKQRVEEMIELVGLRPEQHKKIG 132
Query: 474 SLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALS 533
L +GY +QR+ +A+A++ D +L+LDE T+ LD + +R +
Sbjct: 133 QLSKGY---------------RQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIK 177
Query: 534 RLMQGRTTIVIAHRISTIIEA--DHIIFIEDGKVSESGDQKYLLQQ 577
+ + +T I+ H I +EA D +I I GK+ L
Sbjct: 178 NIGKDKTIILSTH-IMQEVEAICDRVIIINKGKIVADKKLDELSAA 222
>gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c.
Length = 198
Score = 63.5 bits (155), Expect = 1e-10
Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 13/159 (8%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424
+ G++ +G+ + GP+G GK+T++ +L + P SG + +G + +
Sbjct: 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DE 70
Query: 425 LRERISYVG-QDVFLFSNTVRYNILIGRPM-ATEEEMIEIAKSANAHDFIMSLPQGYDTY 482
I Y+G + N+ + + IE A +A LP
Sbjct: 71 PHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQ--- 127
Query: 483 VGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD 521
LS GQ++R+A+AR L + +LDE T+ALD
Sbjct: 128 -------LSAGQQRRLALARLWLSRAPLWILDEPTTALD 159
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 63.2 bits (154), Expect = 2e-10
Identities = 62/218 (28%), Positives = 98/218 (44%), Gaps = 35/218 (16%)
Query: 359 FFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIR 418
F+ + + G+ L G+ +VG SG GKST ++ + + G + G ++
Sbjct: 27 FWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86
Query: 419 DITFSSLRER---ISYVGQDVFLFSNTVRYNI--LIGRPMAT------EEEMIEIAKSAN 467
+ R I + QD L S R I +I P+ T +E+ + K+
Sbjct: 87 GMKDDEWRAVRSDIQMIFQDP-LASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKA-- 143
Query: 468 AHDFIMS----LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTH 523
+M LP + Y E SGGQ QRI IARA++ + +++ DE SALD
Sbjct: 144 ----MMLKVGLLPNLINRYPHE----FSGGQCQRIGIARALILEPKLIICDEPVSALDVS 195
Query: 524 TE----NLVRQALSRLMQGRTTIVIAHRISTIIEADHI 557
+ NL++Q L R M G + I IAH ++ + HI
Sbjct: 196 IQAQVVNLLQQ-LQREM-GLSLIFIAHDLAVV---KHI 228
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 62.6 bits (152), Expect = 3e-10
Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 19/169 (11%)
Query: 361 SYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI 420
+YK G V+ ++L SG++ L+GP+G+GK+T +++ + +G+I ID DI
Sbjct: 12 AYK-GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDD---EDI 67
Query: 421 TFSSLRER----ISYVGQDVFLFSNTVRYNILIG----RPMATEEEMIEIAKSANAHDFI 472
+ L R I Y+ Q+ +F Y+ L+ R + E+ + A I
Sbjct: 68 SLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHI 127
Query: 473 MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD 521
L G +LSGG+++R+ IARA+ + ++LDE + +D
Sbjct: 128 EHLRDSM-------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 62.5 bits (152), Expect = 3e-10
Identities = 57/213 (26%), Positives = 96/213 (45%), Gaps = 24/213 (11%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT---FSS 424
+L+G+ L K G+ AL+G SGSGKST++ +L + D SSG + + G + + +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 425 LRER-ISYVGQDVFL------FSNTVRYNILIG-RPMATEEEMIEIAKSANAHDFIMSLP 476
LR + + +V Q L N +L G + + + + LP
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP 144
Query: 477 QGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM 536
+ LSGG++QR+A+ARA +L DE T LD T + + L L
Sbjct: 145 -----------AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLN 193
Query: 537 Q--GRTTIVIAHRISTIIEADHIIFIEDGKVSE 567
+ G T I++ H + D + + +G++ E
Sbjct: 194 REHGTTLILVTHDLQLAARCDRRLRLVNGQLQE 226
>gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 61.0 bits (148), Expect = 9e-10
Identities = 66/225 (29%), Positives = 99/225 (44%), Gaps = 45/225 (20%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG 414
F D F Y G + +N A+VGP+G GKSTI+ L+ PSSG++
Sbjct: 511 FSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV---- 566
Query: 415 INIRDITFSSLRERISYVGQD----VFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHD 470
F S + R++ Q + L SN + Y ++ P E+++ AH
Sbjct: 567 -------FRSAKVRMAVFSQHHVDGLDLSSNPLLY-MMRCFPGVPEQKL-------RAH- 610
Query: 471 FIMSLPQGYDTYVGENGS-------NLSGGQKQRIAIARAMLRDGHILVLDEATSALDTH 523
+ S G G+ LSGGQK R+A A+ + HIL+LDE ++ LD
Sbjct: 611 -LGSF--------GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLD 661
Query: 524 TENLVRQALSRLMQGRTTIVI--AHRISTIIEADHIIFIEDGKVS 566
+ Q L L QG +V H IS + D + + +GKV+
Sbjct: 662 AVEALIQGLV-LFQGGVLMVSHDEHLISGSV--DELWVVSEGKVT 703
Score = 40.6 bits (95), Expect = 0.001
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 491 SGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAH 546
SGG + RIA+ARA+ + +L+LDE T+ LD H + L L +T IV++H
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYL--LKWPKTFIVVSH 399
>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 60.5 bits (146), Expect = 1e-09
Identities = 42/200 (21%), Positives = 63/200 (31%), Gaps = 67/200 (33%)
Query: 378 SGKMTALVGPSGSGKSTIINLLMRMYDPSSGS-IEIDGINIRDITFSSLRERISYVGQDV 436
G++ +VGP GSGK+T+ L R P G I IDG +I + L
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQL----------- 49
Query: 437 FLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQ 496
VG ++ SG +
Sbjct: 50 ------------------------------------------LLIIVGGKKASGSGELRL 67
Query: 497 RIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM-------QGRTTIVIAHRIS 549
R+A+A A +L+LDE TS LD E L+ + + T I+ +
Sbjct: 68 RLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEK 127
Query: 550 TIIEA------DHIIFIEDG 563
+ A D I +
Sbjct: 128 DLGPALLRRRFDRRIVLLLI 147
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 59.9 bits (145), Expect = 2e-09
Identities = 70/243 (28%), Positives = 112/243 (46%), Gaps = 35/243 (14%)
Query: 356 RDVFFSYKQG--HPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEID 413
+D+FF K G H L+ I+ G++ ++G +GSGKST+ NL+ + P+ G+++I
Sbjct: 25 KDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIK 84
Query: 414 GINIRDITFSSLRERISYVGQDVFLFSNTVRYNI-LIGRPMATEEEMI-----EIAKSAN 467
G S L +++ + NI L G M +E I EI + A+
Sbjct: 85 GSAALIAISSGLNGQLTGI------------ENIELKGLMMGLTKEKIKEIIPEIIEFAD 132
Query: 468 AHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD-THTEN 526
FI Q TY S G K R+ A ++ + ILV+DEA S D T T+
Sbjct: 133 IGKFIY---QPVKTY--------SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKK 181
Query: 527 LVRQALSRLMQGRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKDGSL--Y 583
+ + QG+T I+H +S + +++ G+V E GD K ++ D L Y
Sbjct: 182 CLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLKKY 241
Query: 584 KKM 586
+M
Sbjct: 242 NQM 244
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 59.6 bits (145), Expect = 2e-09
Identities = 60/208 (28%), Positives = 101/208 (48%), Gaps = 43/208 (20%)
Query: 373 NLCFK--SGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERIS 430
+L FK G + ++GP+G+GKST+ ++ P SG+I+I G ++ ++
Sbjct: 340 DLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GETVK----------LA 388
Query: 431 YVGQ--DVFLFSNTVRYNILIGRPMATEEEMIEIAK-SANAHDFIMSLP-QGYD--TYVG 484
YV Q D + TV I G ++I++ K + ++ +G D VG
Sbjct: 389 YVDQSRDALDPNKTVWEEISGGL------DIIQLGKREVPSRAYVGRFNFKGSDQQKKVG 442
Query: 485 ENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVI 544
+ LSGG++ R+ +A+ + G++L+LDE T+ LD T + +AL L +VI
Sbjct: 443 Q----LSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEAL--LEFAGCAVVI 496
Query: 545 AH------RISTIIEADHIIFIE-DGKV 565
+H RI+T HI+ E D V
Sbjct: 497 SHDRWFLDRIAT-----HILAFEGDSHV 519
Score = 54.5 bits (132), Expect = 7e-08
Identities = 52/223 (23%), Positives = 89/223 (39%), Gaps = 56/223 (25%)
Query: 361 SYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI-DGINIRD 419
+L I+L F G ++G +G+GKST++ ++ + +G GI
Sbjct: 13 VVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGI---- 68
Query: 420 ITFSSLRERISYVGQDVFLFSN-TVRYNILIGRP-------------------------- 452
++ Y+ Q+ L TVR N+ G
Sbjct: 69 --------KVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDAL 120
Query: 453 MATEEEMIEIAKSANAHDF---------IMSLPQGYDTYVGENGSNLSGGQKQRIAIARA 503
+A + E+ EI +A+A D + P D V + LSGG+++R+A+ R
Sbjct: 121 LAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPW-DADV----TKLSGGERRRVALCRL 175
Query: 504 MLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAH 546
+L +L+LDE T+ LD + + Q L G T + + H
Sbjct: 176 LLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY-PG-TVVAVTH 216
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 59.1 bits (143), Expect = 3e-09
Identities = 44/155 (28%), Positives = 82/155 (52%), Gaps = 8/155 (5%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI-TFSSLR 426
L ++L G++ L+G +G+GK+T++ L +SG I DG +I D T +R
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 427 ERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGE 485
E ++ V + +FS TV N+ +G A ++ E + ++ P+ ++ +
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQE--RIKWVYEL---FPRLHERRIQR 134
Query: 486 NGSNLSGGQKQRIAIARAMLRDGHILVLDEATSAL 520
G+ +SGG++Q +AI RA++ +L+LDE + L
Sbjct: 135 AGT-MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL 168
>gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 58.7 bits (142), Expect = 4e-09
Identities = 63/215 (29%), Positives = 108/215 (50%), Gaps = 32/215 (14%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLM--RMYDPSSGSIEIDGINIRDITFSSL 425
+L + F+ G +TAL+G SG+GK+T++++L + G I I G + TF+
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFA-- 952
Query: 426 RERIS-YVGQ-DVFLFSNTVRYNIL------IGRPMATEEEMI------EIAKSANAHDF 471
RIS Y Q D+ TVR +++ + + ++ EE+M+ E+ + N D
Sbjct: 953 --RISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDA 1010
Query: 472 IMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQA 531
I+ LP G G LS Q++R+ IA ++ + I+ +DE TS LD +V +
Sbjct: 1011 IVGLP-------GVTG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1061
Query: 532 LSRLMQ-GRTTIVIAHRIST-IIEA-DHIIFIEDG 563
+ + GRT + H+ S I EA D ++ ++ G
Sbjct: 1062 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096
Score = 47.5 bits (113), Expect = 1e-05
Identities = 65/251 (25%), Positives = 109/251 (43%), Gaps = 52/251 (20%)
Query: 370 SGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPS---SGSIEIDGINIRDITFSSLR 426
SGI K +MT L+GP SGK+T++ L DPS SG I +G + + R
Sbjct: 185 SGI---IKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PR 238
Query: 427 ERISYVGQ-DVFLFSNTV---------------RYNILIGRPMATEEE------------ 458
+ +Y+ Q DV + TV RY++L +A E+
Sbjct: 239 KTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLL--SELARREKDAGIFPEAEVDL 296
Query: 459 -----MIEIAKSANAHDF---IMSLPQGYDTYVG-ENGSNLSGGQKQRIAIARAMLRDGH 509
+E KS+ D+ I+ L DT VG E +SGGQK+R+ ++
Sbjct: 297 FMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTK 356
Query: 510 ILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEA----DHIIFIEDGKV 565
L +DE ++ LD+ T + + L +++ V+ + E D II + +G++
Sbjct: 357 TLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416
Query: 566 SESGDQKYLLQ 576
G + ++L+
Sbjct: 417 VYQGPRDHILE 427
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 58.2 bits (141), Expect = 5e-09
Identities = 60/212 (28%), Positives = 94/212 (44%), Gaps = 29/212 (13%)
Query: 379 GKMTALVGPSGSGKSTIINLLMRMYD-PSSGSIEIDGINIRDITFSSLRERISYVGQDV- 436
G++ +VG SGSGKS +M + D P E N +D+ S +ER + VG +V
Sbjct: 33 GEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVA 92
Query: 437 FLFSN---------TVRYNILI-------GRPMATEEEMIEIAKSANAHDFIMSLPQGYD 480
+F + TV + I+ G + I++ D L D
Sbjct: 93 MIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRL----D 148
Query: 481 TYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRT 540
Y + LSGG QR+ IA A+ +L+ DE T+ALD + + + L L Q
Sbjct: 149 VYPHQ----LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKEN 204
Query: 541 T--IVIAHRISTIIE-ADHIIFIEDGKVSESG 569
++I H ++ + E A II + G+V E+G
Sbjct: 205 MALVLITHDLALVAEAAHKIIVMYAGQVVETG 236
>gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 57.8 bits (140), Expect = 8e-09
Identities = 57/225 (25%), Positives = 105/225 (46%), Gaps = 38/225 (16%)
Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDP----SSGSIEIDGINIRDITF 422
P++ G++L + G++ ALVG SGSGKS + + ++G + +DG + +
Sbjct: 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG---KPVAP 73
Query: 423 SSLRER-ISYVGQD---VFLFSNTVRYNIL-----IGRPMATEEEMIEIAKSANAHDFIM 473
+LR R I+ + Q+ F +T+ + +G+P A + + ++ +
Sbjct: 74 CALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKP-ADDATLTAALEAVGLENAAR 132
Query: 474 SLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQA-- 531
L Y E +SGG QR+ IA A+L + ++ DE T+ LD +V QA
Sbjct: 133 VL----KLYPFE----MSGGMLQRMMIALALLCEAPFIIADEPTTDLD-----VVAQARI 179
Query: 532 ---LSRLMQGRT--TIVIAHRISTIIE-ADHIIFIEDGKVSESGD 570
L ++Q R +++ H + + AD + + G++ E GD
Sbjct: 180 LDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGD 224
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005).
Length = 500
Score = 57.5 bits (139), Expect = 9e-09
Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 24/211 (11%)
Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSS--GSI-----EIDGINIRDIT 421
L GI+L + G+ L G +G+GKST++ +L +Y + G I + NIRD
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRD-- 74
Query: 422 FSSLRERISYVGQDVFLFSN-TVRYNILIGRPMATE-EEMIEIAKSANAHDFI--MSLPQ 477
+ R I + Q++ L +V NI +G + M A A + + + L
Sbjct: 75 --TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDA 132
Query: 478 GYDT-YVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM 536
T VG+ G GGQ+Q + IA+A+ + +L+LDE +S+L T E + + R +
Sbjct: 133 DNVTRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSL-TEKETEILLDIIRDL 187
Query: 537 Q--GRTTIVIAHRISTIIE-ADHIIFIEDGK 564
+ G + I+H+++ + D I I DG+
Sbjct: 188 KAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
Score = 39.4 bits (92), Expect = 0.002
Identities = 22/78 (28%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 490 LSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ-GRTTIVIAHRI 548
LSGG +Q+ +A+ +L + +L+LDE T +D + + + +++L Q G IV++ +
Sbjct: 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL 463
Query: 549 STIIE-ADHIIFIEDGKV 565
+ ++ +D ++ I +GK+
Sbjct: 464 AEVLGLSDRVLVIGEGKL 481
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 57.3 bits (138), Expect = 1e-08
Identities = 43/203 (21%), Positives = 89/203 (43%), Gaps = 22/203 (10%)
Query: 360 FSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRD 419
F Y P+L I+ +G + L G +G+GK+T++ L+ + +P G I + +I
Sbjct: 9 FDY-HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI-K 66
Query: 420 ITFSSLRERISYVGQDVFLFSN-TVRYNILIGRPMATE----EEMIEIAKSANAHDFIMS 474
+ ++++ +VG + T+R N L + E+ + + D+
Sbjct: 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCG 126
Query: 475 LPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHT-ENLVRQALS 533
L LS GQK+++A+ R + + +LDE ALD + ++ +
Sbjct: 127 L--------------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQE 172
Query: 534 RLMQGRTTIVIAHRISTIIEADH 556
+G ++ +H+ + +AD+
Sbjct: 173 HRAKGGAVLLTSHQDLPLNKADY 195
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 56.0 bits (136), Expect = 3e-08
Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 33/195 (16%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424
+ SG++ +G++ + GP+G+GK++++ +L + P +G + G IR
Sbjct: 13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIR------ 66
Query: 425 LRERISYVGQDVFL------------FSNTVRYNILIGRPMATEEEMIEIAKSANAHDFI 472
R+R Y ++L N +R+ + P +E + E F
Sbjct: 67 -RQRDEYHQDLLYLGHQPGIKTELTALEN-LRFYQRLHGP-GDDEALWEALAQVGLAGF- 122
Query: 473 MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTH-TENLVRQA 531
+P LS GQ++R+A+AR L + +LDE +A+D L
Sbjct: 123 EDVPVRQ----------LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALL 172
Query: 532 LSRLMQGRTTIVIAH 546
QG I+ H
Sbjct: 173 AQHAEQGGMVILTTH 187
>gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se.
Length = 253
Score = 56.0 bits (135), Expect = 3e-08
Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 20/216 (9%)
Query: 370 SGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEID--GINIRDITFSSLRE 427
++ G++ +VG SGSGKST++ L P G+ ++ S E
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 428 RISYVGQDV-FLFSNT---VRYNILIG-----RPMATEEEMIEIAKSANAHDFI--MSLP 476
R + + F+ N +R + G R MA ++A AHD++ + +
Sbjct: 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAA-AHDWLEEVEID 138
Query: 477 QGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM 536
+ + SGG +QR+ IAR ++ ++ +DE T LD + + L L+
Sbjct: 139 PTR---IDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV 195
Query: 537 Q--GRTTIVIAHRISTI-IEADHIIFIEDGKVSESG 569
+ G I++ H + + A ++ ++ G+V ESG
Sbjct: 196 RDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 55.2 bits (133), Expect = 4e-08
Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 25/188 (13%)
Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLR 426
PV ++ +G+ + G +G+GK+T++ +L + SG I+IDG R
Sbjct: 25 PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTAT----RGDR 80
Query: 427 ER-ISYVG------QDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGY 479
R ++Y+G D+ N L GR ++ SA A I+ L
Sbjct: 81 SRFMAYLGHLPGLKADLSTLENLHFLCGLHGR------RAKQMPGSALA---IVGLAGYE 131
Query: 480 DTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALS-RLMQG 538
DT V LS GQK+R+A+AR L + +LDE + LD LV + +S L G
Sbjct: 132 DTLV----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGG 187
Query: 539 RTTIVIAH 546
+V H
Sbjct: 188 GAALVTTH 195
>gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University).
Length = 924
Score = 53.9 bits (130), Expect = 1e-07
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 484 GENGSNLSGGQKQRIAIARAML-RDGH--ILVLDEATSALDTHTENLVRQALSRLM-QGR 539
G+ + LSGG+ QRI +A+ + R + +LDE T+ L + + L RL+ QG
Sbjct: 823 GQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGN 882
Query: 540 TTIVIAHRISTIIEADHII 558
T +VI H + I AD+II
Sbjct: 883 TVVVIEHNLDVIKTADYII 901
Score = 44.6 bits (106), Expect = 7e-05
Identities = 55/193 (28%), Positives = 82/193 (42%), Gaps = 37/193 (19%)
Query: 403 YDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMI-- 460
P + ++++ G +I D++ S+RE F N + EE+ I
Sbjct: 415 LKPEALAVKVGGKSIADVSELSIRE--------AHEFFNQLDLT--------PEEKKIAE 458
Query: 461 EIAKSANAH-DFIMSLPQGYDTYVGENGSNLSGGQKQRIAIAR---AMLRDGHILVLDEA 516
EI K F++ + Y + LSGG+ QRI +A + L G + VLDE
Sbjct: 459 EILKEIKERLGFLIDVGLDY-LTLSRAAGTLSGGEAQRIRLATQIGSGLT-GVLYVLDEP 516
Query: 517 TSALDTH---TENLVRQALSRLM-QGRTTIVIAHRISTIIEADHIIFI------EDGKVS 566
+ L H E L+ L RL G T IV+ H TI AD++I I G+V
Sbjct: 517 SIGL--HQRDNERLI-NTLKRLRDLGNTVIVVEHDEETIRAADYVIDIGPGAGIHGGEVV 573
Query: 567 ESGDQKYLLQQKD 579
SG + +L D
Sbjct: 574 ASGTPEEILANPD 586
Score = 38.8 bits (91), Expect = 0.004
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIIN 397
L I + G T + G SGSGKST+IN
Sbjct: 623 LKNITVSIPLGLFTCITGVSGSGKSTLIN 651
>gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei.
Length = 659
Score = 51.3 bits (123), Expect = 7e-07
Identities = 47/197 (23%), Positives = 87/197 (44%), Gaps = 27/197 (13%)
Query: 377 KSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDV 436
SG + GP+G GKS++ +L ++ G + + ++ YV Q
Sbjct: 476 PSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRP 524
Query: 437 FLFSNTVRYNILIGRPMATEE---------EMIEIAKSANAHDFIMSLPQGYDTYVGENG 487
++ T+R I+ P ++E+ ++ +I + I+ G+ V +
Sbjct: 525 YMTLGTLRDQIIY--PDSSEDMKRRGLSDKDLEQILDNVQLTH-ILEREGGWSA-VQDWM 580
Query: 488 SNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHR 547
LSGG+KQRIA+AR +LDE TSA+ E + + G T ++HR
Sbjct: 581 DVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHR 638
Query: 548 ISTIIEADHIIFIEDGK 564
S ++++++ DG+
Sbjct: 639 KSLWKYHEYLLYM-DGR 654
>gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 50.7 bits (122), Expect = 1e-06
Identities = 55/221 (24%), Positives = 94/221 (42%), Gaps = 66/221 (29%)
Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLR 426
P+ I++ F G L+G +G GKST + +L +PS+G++ +D
Sbjct: 15 PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLD-----------PN 63
Query: 427 ERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQG------- 478
ER+ + QD F F TV +++G E+ E+ + + I +LP+
Sbjct: 64 ERLGKLRQDQFAFEEFTVLDTVIMG-----HTELWEVKQERDR---IYALPEMSEEDGMK 115
Query: 479 ----------YDTYVGE-----------------NG--SNLSGGQKQRIAIARAMLRDGH 509
D Y E G S ++ G K R+ +A+A+ +
Sbjct: 116 VADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPD 175
Query: 510 ILVLDEATSALDTHT----ENLVRQALSRLMQGRTTIVIAH 546
IL+LDE T+ LD +T E+++ + S T I+I+H
Sbjct: 176 ILLLDEPTNNLDINTIRWLEDVLNERNS------TMIIISH 210
Score = 46.4 bits (111), Expect = 2e-05
Identities = 55/224 (24%), Positives = 95/224 (42%), Gaps = 64/224 (28%)
Query: 365 GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSS 424
P+ +NL ++G+ A++G +G GK+T++ L+ +P SG+++ S
Sbjct: 331 NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKW-----------S 379
Query: 425 LRERISYVGQD--------VFLFS------------NTVRYNILIGRPMATEEEMIEIAK 464
I Y QD + LF VR L GR + +++ +I K
Sbjct: 380 ENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVR-GTL-GRLLFSQD---DIKK 434
Query: 465 SANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHT 524
S LSGG+K R+ + M++ ++LV+DE T+ +D +
Sbjct: 435 SVK---------------------VLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMES 473
Query: 525 ENLVRQALSRLMQGRTTIVIAH-R--ISTIIEADHIIFIEDGKV 565
+ AL +G T I ++H R +S++ A II I V
Sbjct: 474 IESLNMAL-EKYEG-TLIFVSHDREFVSSL--ATRIIEITPDGV 513
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 50.3 bits (121), Expect = 1e-06
Identities = 56/231 (24%), Positives = 93/231 (40%), Gaps = 62/231 (26%)
Query: 379 GKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSL------------R 426
G++ +VG SGSGK+T++N L P +G + RD L R
Sbjct: 32 GEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRM---RDGQLRDLYALSEAERRRLLR 88
Query: 427 ERISYVGQDVFLFSNTVRYNILIG-----RPMATEE--------------EMIEIAKSAN 467
+V Q + +R + G R MA E +EI +
Sbjct: 89 TEWGFVHQHP---RDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAAR- 144
Query: 468 AHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTE-- 525
I LP + SGG +QR+ IAR ++ ++ +DE T LD +
Sbjct: 145 ----IDDLPTTF-----------SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQAR 189
Query: 526 --NLVRQALSRLMQGRTTIVIAHRISTI-IEADHIIFIEDGKVSESG--DQ 571
+L+R + L G +++ H ++ + A ++ ++ G+V ESG DQ
Sbjct: 190 LLDLLRGLVREL--GLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQ 238
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 49.8 bits (119), Expect = 2e-06
Identities = 49/224 (21%), Positives = 101/224 (45%), Gaps = 25/224 (11%)
Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG-INIRDITFSSLRE 427
L I+L G + LVG +GSGKST+ N++ P+ G ++ +G +++ I+ + L
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAIS-AGLSG 98
Query: 428 RISYVGQDVFLFSNTVRYNILIG-RPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGEN 486
+++ + F + +G + + +I + + +FI + Y
Sbjct: 99 QLTGIENIEFKM-------LCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKY------- 144
Query: 487 GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD-THTENLVRQALSRLMQGRTTIVIA 545
S G + ++ + + + ILV+DEA S D T + + + Q +T ++
Sbjct: 145 ----SSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVS 200
Query: 546 HRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKDGSL--YKKM 586
H + + + I +IE GK+ + G+ +L + + L +KK
Sbjct: 201 HNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDFKKK 244
>gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 242
Score = 49.5 bits (119), Expect = 2e-06
Identities = 47/196 (23%), Positives = 84/196 (42%), Gaps = 31/196 (15%)
Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE- 427
L+ ++L G++ ++GP+G+GK+T+++++ P GS+ G D+T L E
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGG---TDLT--GLPEH 72
Query: 428 RISYVG-----QDVFLFSN-TVRYNILIG-----RPMAT------EEEMIEIAKSANAHD 470
+I+ G Q +F N TV N+ + A+ EE I + +
Sbjct: 73 QIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVL---E 129
Query: 471 FIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQ 530
I G LS GQKQ + I +++D +L+LDE + + +
Sbjct: 130 TI-----GLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAE 184
Query: 531 ALSRLMQGRTTIVIAH 546
L L + +V+ H
Sbjct: 185 LLKSLAGKHSVVVVEH 200
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 48.5 bits (116), Expect = 5e-06
Identities = 66/254 (25%), Positives = 108/254 (42%), Gaps = 53/254 (20%)
Query: 338 EESPHAVNLPVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIIN 397
+E LP + V + SY P+L ++ G+ +VGP+G+GKST+++
Sbjct: 246 DEPSARHALPANEPRIVLNNGVVSYND-RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLS 304
Query: 398 LL-----------MRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFL---FSNTV 443
L+ + ++ GS G I DI ++ I YV + L S +V
Sbjct: 305 LITGDHPQGYSNDLTLFGRRRGS----GETIWDI-----KKHIGYVSSSLHLDYRVSTSV 355
Query: 444 RYNIL------IGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENG-SNLSGGQKQ 496
R IL IG A + + A ++ L G D + +LS GQ Q
Sbjct: 356 RNVILSGFFDSIGIYQAVSD-----RQQKLAQQWLDIL--GIDKRTADAPFHSLSWGQ-Q 407
Query: 497 RIA-IARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM-QGRTTIV----------- 543
R+A I RA+++ +L+LDE LD LVR+ + L+ +G T ++
Sbjct: 408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPA 467
Query: 544 -IAHRISTIIEADH 556
I HR+ + + D
Sbjct: 468 CITHRLEFVPDGDI 481
Score = 45.4 bits (108), Expect = 4e-05
Identities = 58/239 (24%), Positives = 107/239 (44%), Gaps = 35/239 (14%)
Query: 373 NLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYV 432
+L +G A VG +GSGKS + L SG + +I ++F L++ +S
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS-- 80
Query: 433 GQDVFLFSNTVRYNIL------IGRPMATEEEMIEIAKSAN------AHDF-IMSLPQGY 479
D + +NT ++L GR T E+I+ A F I +L
Sbjct: 81 --DEWQRNNT---DMLSPGEDDTGR---TTAEIIQDEVKDPARCEQLAQQFGITALLDRR 132
Query: 480 DTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGR 539
Y LS G+ ++ + +A++ + +L+LDE LD + + + L+ L Q
Sbjct: 133 FKY-------LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSG 185
Query: 540 TTIV-IAHRISTIIE-ADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLENLS 596
T+V + +R I + + D ++E+G+++ +LQQ +L ++ S+ LE +
Sbjct: 186 ITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ---ALVAQLAHSEQLEGVQ 241
>gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 47.9 bits (114), Expect = 7e-06
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 488 SNLSGGQKQRIAIARAML---RDGHILVLDEATSALDTH-TENLVRQALSRLMQGRTTIV 543
S+LSGG+ QR+ +A +L + + VLDE T+ L TH + L+ S QG T ++
Sbjct: 808 SSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVI 867
Query: 544 IAHRISTIIEADHII 558
I H + + AD+++
Sbjct: 868 IEHNMHVVKVADYVL 882
Score = 43.3 bits (102), Expect = 2e-04
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 483 VGENGSNLSGGQKQRIAIARAML---RDGHILVLDEATSALDTHTENLVRQALSRLM-QG 538
+G+N S+LS +K I IA+ + + + +LDE ++LD ++ + L L+ G
Sbjct: 1693 LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLG 1752
Query: 539 RTTIVIAHRISTIIEADHIIFI------EDGKVSESGDQKYLLQQKDGSLYKKM 586
+ I I H + + +AD++I + GK+ SG K + KD L M
Sbjct: 1753 HSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKDSLLKTYM 1806
Score = 35.2 bits (81), Expect = 0.054
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 490 LSGGQKQRIAIARAMLRD--GHILVLDEATSAL---DTHTENLVRQALSRLMQGRTTIVI 544
LSGG+++R A+A+ + + G +LDE + L DTH V + L QG T +++
Sbjct: 477 LSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRD--QGNTVLLV 534
Query: 545 AHRISTIIEADHIIFIEDG 563
H I AD II I G
Sbjct: 535 EHDEQMISLADRIIDIGPG 553
Score = 31.3 bits (71), Expect = 0.77
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 379 GKMTALVGPSGSGKSTIIN 397
G++T + G SGSGKS++IN
Sbjct: 621 GRLTVVTGVSGSGKSSLIN 639
>gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 47.8 bits (115), Expect = 8e-06
Identities = 47/197 (23%), Positives = 76/197 (38%), Gaps = 54/197 (27%)
Query: 362 YKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI-DGINIRDI 420
+L I+L F G ++G +G+GKST++ ++ + G GI
Sbjct: 16 VPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGI----- 70
Query: 421 TFSSLRERISYVGQDVFL-FSNTVRYNIL---------------IGRPMATE-------- 456
++ Y+ Q+ L TVR N+ I A
Sbjct: 71 -------KVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALA 123
Query: 457 EEM---IEIAKSANAHDF---------IMSLPQGYDTYVGENGSNLSGGQKQRIAIARAM 504
E EI +A+A D + P D V + LSGG+++R+A+ R +
Sbjct: 124 AEQGELQEIIDAADAWDLDSQLEIAMDALRCPPW-DAKV----TKLSGGERRRVALCRLL 178
Query: 505 LRDGHILVLDEATSALD 521
L +L+LDE T+ LD
Sbjct: 179 LEKPDMLLLDEPTNHLD 195
Score = 47.0 bits (113), Expect = 1e-05
Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 59/203 (29%)
Query: 385 VGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQ--DVFLFSNT 442
+GP+G+GKST+ ++ P SG+I+I G ++ ++YV Q D + T
Sbjct: 356 IGPNGAGKSTLFKMITGQEQPDSGTIKI-GETVK----------LAYVDQSRDALDPNKT 404
Query: 443 VRYNILIGRPMATEEEMIEIAK---SANAHDFIMSLPQGYDTYVGE---NGS-------N 489
V I G ++I++ + A YVG G
Sbjct: 405 VWEEISGG------LDIIKVGNREIPSRA-------------YVGRFNFKGGDQQKKVGV 445
Query: 490 LSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAH--- 546
LSGG++ R+ +A+ + + G++L+LDE T+ LD T + +AL L +VI+H
Sbjct: 446 LSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEAL--LEFPGCAVVISHDRW 503
Query: 547 ---RISTIIEADHIIFIE-DGKV 565
RI+T HI+ E D +V
Sbjct: 504 FLDRIAT-----HILAFEGDSQV 521
>gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 46.7 bits (111), Expect = 2e-05
Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 44/226 (19%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI-DGINIRDITFSSLR 426
+L I L G L+G +G+GKST+I LL P SG I + GI + F+ +
Sbjct: 327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLG--YFA--Q 382
Query: 427 ERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLP-QGYDTYVGE 485
++ ++ D + R P E+++ D++ QG V E
Sbjct: 383 HQLEFLRADESPLQHLARL-----APQELEQKL---------RDYLGGFGFQG--DKVTE 426
Query: 486 NGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM---QGRTTI 542
SGG+K R+ +A + + ++L+LDE T+ LD +RQAL+ + +G +
Sbjct: 427 ETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLD----MRQALTEALIDFEG-ALV 481
Query: 543 VIAH-----RISTIIEADHIIFIEDGKVSE-SGD----QKYLLQQK 578
V++H R +T D + + DGKV GD Q++L +
Sbjct: 482 VVSHDRHLLRSTT----DDLYLVHDGKVEPFDGDLEDYQQWLSDVQ 523
Score = 35.5 bits (82), Expect = 0.036
Identities = 62/241 (25%), Positives = 100/241 (41%), Gaps = 44/241 (18%)
Query: 379 GKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDV-F 437
G+ LVG +G GKST++ LL I DG + TF ++++V Q+
Sbjct: 27 GQKVGLVGKNGCGKSTLLALL-------KNEISADGGSY---TFPG-NWQLAWVNQETPA 75
Query: 438 LFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTY--------------- 482
L + Y I R E + A N I ++ D
Sbjct: 76 LPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHG 135
Query: 483 -------VGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRL 535
+ S+ SGG + R+ +A+A++ +L+LDE T+ LD + + L +
Sbjct: 136 LGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWL-KS 194
Query: 536 MQGRTTIVIAHR---ISTIIEADHIIFIEDGKVSE-SGDQKYLLQQKDGSLYKK--MYAS 589
QG T I+I+H + I+ D II IE + E +G+ Q+ L ++ MY S
Sbjct: 195 YQG-TLILISHDRDFLDPIV--DKIIHIEQQSLFEYTGNYSSFEVQRATRLAQQQAMYES 251
Query: 590 Q 590
Q
Sbjct: 252 Q 252
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 45.2 bits (107), Expect = 5e-05
Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 15/162 (9%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427
L +++ F +T + G +G GKS+++ ++ + PSSG+I NI +I +
Sbjct: 15 NLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KP 70
Query: 428 RISYVGQDVFL-FSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGEN 486
+Y+G ++ L TV N+ + E + A H F + + E
Sbjct: 71 YCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAA----IHYFKL------HDLLDEK 120
Query: 487 GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528
+LS G ++ +AIAR + + +LDE + L +L+
Sbjct: 121 CYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLL 162
>gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 43.8 bits (104), Expect = 1e-04
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 15/96 (15%)
Query: 488 SNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHT----ENLVRQALSRLMQGRTTIV 543
S+LSGG ++ A+ RA++ + +L+LDE T+ LD T E L + +I+
Sbjct: 155 SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGF-------LKTFQGSII 207
Query: 544 -IAHRISTIIE-ADHIIFIEDGK-VSESGD-QKYLL 575
I+H S I A I+ ++ GK VS G+ +YLL
Sbjct: 208 FISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQYLL 243
Score = 41.1 bits (97), Expect = 8e-04
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 490 LSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAH 546
LSGG++ R+ +AR L+ ++L+LDE T+ LD T L+ + L QG T ++++H
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDS-YQG-TVLLVSH 495
Score = 38.8 bits (91), Expect = 0.004
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 383 ALVGPSGSGKSTIINLLMRMYDPSSGSI 410
AL+GP+G GK+T++ L++ SG I
Sbjct: 349 ALIGPNGCGKTTLLKLMLGQLQADSGRI 376
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 43.2 bits (102), Expect = 2e-04
Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 33/197 (16%)
Query: 372 INLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPS---SGSIEIDG---INIRDITFSSL 425
+N ++G+ +VG SGSGKS LM + + GS +G +N+ + + L
Sbjct: 35 LNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKL 94
Query: 426 R-ERISYVGQDVFLFSN---TVRYNIL--------IGRPMATEE--EMIEIAKSANAHDF 471
R E+IS + QD N V ++ + + A EE M++ K A
Sbjct: 95 RAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKR 154
Query: 472 IMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQA 531
+ P + SGG +QR+ IA A+L +L+ DE T+ALD + +
Sbjct: 155 MKMYPHEF-----------SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTL 203
Query: 532 LSRLMQGRTT--IVIAH 546
L+ L + T I+I H
Sbjct: 204 LNELKREFNTAIIMITH 220
>gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 41.2 bits (98), Expect = 9e-04
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 10/83 (12%)
Query: 483 VGENGSNLSGGQKQRIAIARAMLR--DGHIL-VLDEATSALDTHTENLVRQALS---RLM 536
+G+ + LSGG+ QR+ +A+ + + G L +LDE T+ L H E+ +R+ L RL+
Sbjct: 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL--HFED-IRKLLEVLHRLV 880
Query: 537 -QGRTTIVIAHRISTIIEADHII 558
+G T +VI H + I AD II
Sbjct: 881 DKGNTVVVIEHNLDVIKTADWII 903
Score = 38.9 bits (92), Expect = 0.004
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIIN 397
L +++ GK T + G SGSGKST+IN
Sbjct: 625 LKNVDVEIPLGKFTCVTGVSGSGKSTLIN 653
Score = 32.0 bits (74), Expect = 0.47
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 490 LSGGQKQRIAIAR---AMLRDGHILVLDEATSALDTH---TENLVRQALSRLM-QGRTTI 542
LSGG+ QRI +A + L G + VLDE + L H + L+ + L L G T I
Sbjct: 490 LSGGEAQRIRLATQIGSGLT-GVLYVLDEPSIGL--HQRDNDRLI-ETLKHLRDLGNTLI 545
Query: 543 VIAHRISTIIEADHIIFI 560
V+ H TI AD+I+ I
Sbjct: 546 VVEHDEDTIRAADYIVDI 563
>gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 39.5 bits (93), Expect = 0.003
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 17/59 (28%)
Query: 342 HAVNLPVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLM 400
AV+ G+G V LSG GK AL+G SG GKST++N L+
Sbjct: 175 LAVSALDGEGLDVLA----------AWLSG-------GKTVALLGSSGVGKSTLVNALL 216
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 39.4 bits (92), Expect = 0.003
Identities = 58/234 (24%), Positives = 99/234 (42%), Gaps = 42/234 (17%)
Query: 372 INLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSL--RERI 429
+++ G++ LVG SGSGKS I + + + + D + DI L RER
Sbjct: 26 VSMTLTEGEIRGLVGESGSGKSLIAKAICGV-TKDNWRVTADRMRFDDIDLLRLSPRERR 84
Query: 430 SYVGQDVFLF----------SNTVRYNILIGRPMAT------------EEEMIEIAKSA- 466
VG +V + S V ++ P T + IE+
Sbjct: 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVG 144
Query: 467 -NAHDFIM-SLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHT 524
H M S P Y+ L+ G+ Q++ IA A+ +L+ DE T+A++ T
Sbjct: 145 IKDHKDAMRSFP--YE---------LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTT 193
Query: 525 ENLVRQALSRLMQ--GRTTIVIAHRISTIIE-ADHIIFIEDGKVSESGDQKYLL 575
+ + + L+RL Q T ++I+H + + + AD I + G+ E+ K L+
Sbjct: 194 QAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELV 247
>gnl|CDD|178968 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 38.9 bits (92), Expect = 0.004
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 377 KSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSI----------EIDGIN 416
+ G + L GPSG+GKST++ L+ S+ E+DG++
Sbjct: 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVD 52
>gnl|CDD|178861 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 38.6 bits (91), Expect = 0.004
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 379 GKMTALVGPSGSGKSTIINLL 399
GK+T L G SG GKST++N L
Sbjct: 164 GKVTVLAGQSGVGKSTLLNAL 184
>gnl|CDD|150482 pfam09818, ABC_ATPase, Predicted ATPase of the ABC class. Members
of this family include various bacterial predicted ABC
class ATPases.
Length = 447
Score = 37.6 bits (88), Expect = 0.008
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 31/116 (26%)
Query: 471 FIMSLPQGYDT--YVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528
FI +LP G DT + E+ S G Q I A+ +L++DE TSA T ++
Sbjct: 304 FINNLPPGKDTTDFSTEDAS---GSTSQAANIQEALEAGASLLLIDEDTSA----TNFMI 356
Query: 529 R----QAL-SRLMQGRTTIV-------IAHRISTII----------EADHIIFIED 562
R QAL S+ + T V +STI+ AD +I ++D
Sbjct: 357 RDERMQALVSKEKEPITPFVDRVRSLYDDLGVSTILVVGGSGDYLDVADTVIQMDD 412
>gnl|CDD|183407 PRK12289, PRK12289, GTPase RsgA; Reviewed.
Length = 352
Score = 37.7 bits (88), Expect = 0.009
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 18/66 (27%)
Query: 355 FRDVFFSYKQGHPVLSGINLCFK--SGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEI 412
++ +F S + G G+ + K+T + GPSG GKS++IN L I
Sbjct: 150 YQPLFISVETG----IGLEALLEQLRNKITVVAGPSGVGKSSLINRL------------I 193
Query: 413 DGINIR 418
+ +R
Sbjct: 194 PDVELR 199
>gnl|CDD|132307 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP kinase.
This enzyme transfers a phosphate from ATP to GMP,
yielding ADP and GDP.
Length = 180
Score = 35.9 bits (84), Expect = 0.028
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 379 GKMTALVGPSGSGKSTIINLLMRMYDPSSGSI----------EIDGIN 416
G + + GPSG GKST++ L+ SI E+DG++
Sbjct: 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVD 48
>gnl|CDD|180549 PRK06381, PRK06381, threonine synthase; Validated.
Length = 319
Score = 35.1 bits (81), Expect = 0.047
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 34/122 (27%)
Query: 327 MFSLLDHPIM--IEESPHAVNLPVGKGTTVFRDVFFSYKQGHPVLSGINLCFK------- 377
+S + + I + + P AV +PVG GTT L+GI F+
Sbjct: 151 AYSAIAYEIYEALGDVPDAVAVPVGNGTT---------------LAGIYHGFRRLYDRGK 195
Query: 378 SGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE----RISYVG 433
+ +M ++G S SG + I+ R GS E+ + + +I +++ E S+ G
Sbjct: 196 TSRMPRMIGVSTSGGNQIVESFKR------GSSEVVDLEVDEIRETAVNEPLVSYRSFDG 249
Query: 434 QD 435
+
Sbjct: 250 DN 251
>gnl|CDD|129547 TIGR00455, apsK, adenylylsulfate kinase (apsK). Important residue
(active site in E.coli) is residue 100 of the seed
alignment.
Length = 184
Score = 34.8 bits (80), Expect = 0.060
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 384 LVGPSGSGKSTIINLLMR-MYDPSSGSIEIDGINIR-----DITFSS--LRERISYVGQD 435
L G SGSGKSTI N L + + +DG N+R D+ FS +E I +G+
Sbjct: 23 LTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEV 82
Query: 436 VFLFS 440
LF
Sbjct: 83 AKLFV 87
>gnl|CDD|162115 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase,
VirB4 family. Type IV secretion systems are found in
Gram-negative pathogens. They export proteins, DNA, or
complexes in different systems and are related to
plasmid conjugation systems. This model represents
related ATPases that include VirB4 in Agrobacterium
tumefaciens (DNA export) CagE in Helicobacter pylori
(protein export) and plasmid TraB (conjugation).
Length = 785
Score = 34.6 bits (80), Expect = 0.072
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 381 MTALVGPSGSGKSTIINLL---MRMYDPSS 407
T + GP+GSGK+T++N L M+ Y +
Sbjct: 436 HTLIFGPTGSGKTTLLNFLLAQMQKYGGMT 465
>gnl|CDD|162739 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle.
Length = 1179
Score = 34.3 bits (79), Expect = 0.088
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 10/31 (32%)
Query: 376 FKS----------GKMTALVGPSGSGKSTII 396
FKS +T +VGP+G GKS I+
Sbjct: 10 FKSFADPTTINFDKGITGIVGPNGCGKSNIV 40
Score = 33.9 bits (78), Expect = 0.14
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 490 LSGGQKQRIAIARA----MLRDGHILVLDEATSALD-THTENLVRQALSRLMQGRTT-IV 543
LSGG+K A+A ++ +LDE + LD + E L + T IV
Sbjct: 1090 LSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFAN--LLKEFSKNTQFIV 1147
Query: 544 IAHRISTIIEADHII 558
I H T+ AD +
Sbjct: 1148 ITHNKGTMEVADQLY 1162
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 33.3 bits (76), Expect = 0.18
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 14/68 (20%)
Query: 460 IEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQ------RIAIARAMLRDGHILVL 513
I++ + N + +G D+ LSGG+K R+A+A+ + D +L++
Sbjct: 780 IDVDQDFNITVSRGGMVEGIDS--------LSGGEKTAVAFALRVAVAQFLNNDKSLLIM 831
Query: 514 DEATSALD 521
DE T+ LD
Sbjct: 832 DEPTAFLD 839
>gnl|CDD|173186 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 767
Score = 32.1 bits (73), Expect = 0.42
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 367 PVLSGINLCFKSGKMTALVGPSGSGKST 394
PVL + G + ALVGP+G GK+T
Sbjct: 173 PVLRDEDALLAQGGVLALVGPTGVGKTT 200
>gnl|CDD|162806 TIGR02322, phosphon_PhnN, phosphonate metabolism
protein/1,5-bisphosphokinase (PRPP-forming) PhnN.
Members of this family resemble PhnN of phosphonate
utilization operons, where different such operons confer
the ability to use somewhat different profiles of C-P
bond-containing compounds (see PubMed:15231805),
including phosphites as well as phosphonates. PhnN in E.
coli shows considerable homology to guanylate kinases
(EC 2.7.4.8), and has actually been shown to act as a
ribose 1,5-bisphosphokinase (PRPP forming). This
suggests an analogous kinase reaction for phosphonate
metabolism, converting
5-phosphoalpha-1-(methylphosphono)ribose to
methylphosphono-PRPP.
Length = 179
Score = 31.6 bits (72), Expect = 0.54
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 379 GKMTALVGPSGSGKSTIINLL 399
G++ +VGPSG+GK T+++
Sbjct: 1 GRLIYVVGPSGAGKDTLLDYA 21
>gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional.
Length = 1157
Score = 31.6 bits (72), Expect = 0.60
Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 30/77 (38%)
Query: 522 THTENLVRQALSRL--MQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKD 579
TH E+LVRQ+L RL + VIA R LL+Q D
Sbjct: 41 THREDLVRQSLYRLELIDPNNPDVIAARFR-----------------------LLLRQGD 77
Query: 580 GSLYKKMYASQLLENLS 596
A +LL+ LS
Sbjct: 78 SDG-----AQKLLDRLS 89
>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 401
Score = 31.2 bits (70), Expect = 0.83
Identities = 23/82 (28%), Positives = 34/82 (41%)
Query: 453 MATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILV 512
AT E +I A A + LP Y+G G LSG + +A +R I V
Sbjct: 166 FATPETIIGFHPDAGASFNLSHLPGRLGEYLGLTGLKLSGAEMLACGLATHYIRSEEIPV 225
Query: 513 LDEATSALDTHTENLVRQALSR 534
++E L T ++V L +
Sbjct: 226 MEEQLKKLLTDDPSVVESCLEK 247
>gnl|CDD|180615 PRK06547, PRK06547, hypothetical protein; Provisional.
Length = 172
Score = 30.5 bits (69), Expect = 1.1
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 379 GKMTALV-GPSGSGKSTIINLL 399
G +T L+ G SGSGK+T+ L
Sbjct: 14 GMITVLIDGRSGSGKTTLAGAL 35
>gnl|CDD|184350 PRK13825, PRK13825, conjugal transfer protein TraB; Provisional.
Length = 388
Score = 30.4 bits (69), Expect = 1.3
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 477 QGYDTYVGENGSNLSGGQKQR--IAIARAMLRDG-HILVLDEATSALDTHT-ENLVRQAL 532
G DT +G + + +++R IA RA G ++VL E+ T T E L R++L
Sbjct: 189 VGVDTQLGRSLGRDASLERRRELIATVRAAAAAGARVVVLPESALGFWTPTTERLWRESL 248
Query: 533 SRLMQGRTTIVIA 545
+G VIA
Sbjct: 249 ----RGSDVTVIA 257
>gnl|CDD|161735 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A.
The Aquifex aeolicus ortholog is split into consecutive
open reading frames. Consequently, this model was build
in fragment mode (-f option).
Length = 245
Score = 30.5 bits (69), Expect = 1.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 378 SGKMTALVGPSGSGKSTIINLL 399
+++ G SG GKS++IN L
Sbjct: 119 QNRISVFAGQSGVGKSSLINAL 140
>gnl|CDD|162740 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent.
Length = 1164
Score = 30.4 bits (69), Expect = 1.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 382 TALVGPSGSGKSTIINLLM 400
T + GP+GSGKS I + ++
Sbjct: 26 TVISGPNGSGKSNIGDAIL 44
>gnl|CDD|163495 TIGR03783, Bac_Flav_CT_G, Bacteroides conjugation system ATPase,
TraG family. Members of this family include the
predicted ATPase, TraG, encoded by transfer region genes
of conjugative transposons of Bacteroides, such as
CTnDOT, found on the main chromosome. Members also
include TraG homologs borne on plasmids in Bacteroides.
The protein family is related to the conjugative
transfer system ATPase VirB4.
Length = 829
Score = 30.2 bits (68), Expect = 1.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 384 LVGPSGSGKSTIINLLMRMY 403
++GPSGSGKS N L+R Y
Sbjct: 443 ILGPSGSGKSFFTNHLVRQY 462
>gnl|CDD|178887 PRK00131, aroK, shikimate kinase; Reviewed.
Length = 175
Score = 30.2 bits (69), Expect = 1.6
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 384 LVGPSGSGKSTI 395
L+G G+GKSTI
Sbjct: 9 LIGFMGAGKSTI 20
>gnl|CDD|181062 PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 699
Score = 30.2 bits (68), Expect = 1.7
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 15/101 (14%)
Query: 415 INIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDF--- 471
I I F + ER+ Y+ + F F+ Y+ EE++IE+ A + F
Sbjct: 41 IKDNTIFFDTEIERLRYLVDNDFYFNVFDIYS---------EEDLIEVTDYAYSIKFNFA 91
Query: 472 -IMSLPQGYDTYV--GENGSNLSGGQKQRIAIARAMLRDGH 509
MS + Y Y + + +AI L +G
Sbjct: 92 SYMSASKFYKDYALKTNDKKQYLEDYEDHVAIVALYLANGD 132
>gnl|CDD|163456 TIGR03744, traC_PFL_4706, conjugative transfer ATPase, PFL_4706
family. Members of this protein family are predicted
ATP-binding proteins apparently associated with DNA
conjugal transfer. Members are found both in plasmids
and in bacterial chromosomal regions that appear to
derive from integrative elements such as conjugative
transposons. More distant homologs, outside the scope of
this family, include type IV secretion/conjugal transfer
proteins such as TraC, VirB4 and TrsE. The granularity
of this protein family definition is chosen so as to
represent one distinctive clade and act as a marker
through which to define and recognize the class of
mobile element it serves.
Length = 893
Score = 30.0 bits (68), Expect = 1.9
Identities = 35/129 (27%), Positives = 49/129 (37%), Gaps = 55/129 (42%)
Query: 295 SFITALLMAYEP---AKRIARTRIILEGGMVGVRCMFSLLDHPIMIEESPHAVNL-PV-- 348
S++ L M + P K TR+ MF+ H NL PV
Sbjct: 405 SYLRWLPMNFNPDLDRKSRWYTRL-----------MFA-----------QHIANLLPVFG 442
Query: 349 -GKGTTVFRDVFFSYKQGHPVLSGIN-----LCF-----KSGKMTA---LVGPSGSGKS- 393
GT GHP ++ N L F K A ++GP+G+GKS
Sbjct: 443 RSTGT------------GHPGITFFNRGGEPLTFDPLNKLDRKKNAHLLILGPTGAGKSA 490
Query: 394 TIINLLMRM 402
T+ NLLM++
Sbjct: 491 TLTNLLMQV 499
>gnl|CDD|184357 PRK13873, PRK13873, conjugal transfer ATPase TrbE; Provisional.
Length = 811
Score = 29.9 bits (68), Expect = 2.0
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 27/55 (49%)
Query: 351 GTTVFR------DVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLL 399
G+T FR DV GH T +VGP+G+GKS ++ L+
Sbjct: 428 GSTPFRLSLHVGDV------GH---------------TLVVGPTGAGKSVLLALM 461
>gnl|CDD|129694 TIGR00606, rad50, rad50. This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University).
Length = 1311
Score = 29.6 bits (66), Expect = 2.1
Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 32/148 (21%)
Query: 411 EIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHD 470
EI+ I IRD+ R +Y GQD+ + R A E + + ++
Sbjct: 1141 EINKI-IRDLW------RSTYRGQDI----EYIEI-----RSDADEN--VSASDKRRNYN 1182
Query: 471 FIMSLPQGYDTYVGENGSNLSGGQKQ------RIAIARAMLRDGHILVLDEATSALDTHT 524
+ + + +G DT + G S GQK R+A+A + I+ LDE T+ LD
Sbjct: 1183 YRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDREN 1240
Query: 525 ENLVRQALSRLMQGRTT------IVIAH 546
+ AL +++ R+ +VI H
Sbjct: 1241 IESLAHALVEIIKSRSQQRNFQLLVITH 1268
Score = 28.5 bits (63), Expect = 5.1
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 381 MTALVGPSGSGKSTIINLL 399
+T LVGP+G+GK+TII L
Sbjct: 30 LTILVGPNGAGKTTIIECL 48
>gnl|CDD|183705 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 29.6 bits (66), Expect = 2.3
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 379 GKMTALVGPSGSGKSTII 396
G + ALVGP+G+GK+T I
Sbjct: 350 GGVIALVGPTGAGKTTTI 367
>gnl|CDD|162962 TIGR02651, RNase_Z, ribonuclease Z. Processing of the 3-prime end
of tRNA precursors may be the result of endonuclease or
exonuclease activity, and differs in different species.
Member of this family are ribonuclease Z, a tRNA 3-prime
endonuclease that processes tRNAs to prepare for
addition of CCA. In species where all tRNA sequences
already have the CCA tail, such as E. coli, the need for
such an enzyme is unclear. Protein similar to the E.
coli enzyme, matched by TIGR02649, are designated
ribonuclease BN.
Length = 299
Score = 29.5 bits (67), Expect = 2.3
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 133 QVRFTHATQSVRSVVDIFITSFLRD-FLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVR 191
Q + + S + IFIT D L L GL+ M Q L I GP G++
Sbjct: 39 QRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLT--IYGP---PGIK 93
Query: 192 ILVKRVRHI 200
++ +
Sbjct: 94 EFIETSLRV 102
>gnl|CDD|149505 pfam08477, Miro, Miro-like protein. Mitochondrial Rho proteins
(Miro-1 and Miro-2), are atypical Rho GTPases. They have
a unique domain organisation, with tandem GTP-binding
domains and two EF hand domains (pfam00036), that may
bind calcium. They are also larger than classical small
GTPases. It has been proposed that they are involved in
mitochondrial homeostasis and apoptosis.
Length = 118
Score = 29.7 bits (67), Expect = 2.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 383 ALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINI 417
++G GSGKS++++ L+ P EI G +
Sbjct: 3 VVIGDKGSGKSSLLSQLVGGEFPPEIPEEIQGDTL 37
>gnl|CDD|139913 PRK13853, PRK13853, type IV secretion system protein VirB4;
Provisional.
Length = 789
Score = 29.8 bits (67), Expect = 2.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 381 MTALVGPSGSGKSTIINLLMRMYDPS 406
MTA+ GP G GK+T++ ++ M + S
Sbjct: 428 MTAIFGPIGRGKTTLMTFILAMLEQS 453
>gnl|CDD|179661 PRK03846, PRK03846, adenylylsulfate kinase; Provisional.
Length = 198
Score = 29.5 bits (67), Expect = 2.4
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 386 GPSGSGKSTIINLL-MRMYDPSSGSIEIDGINIR-----DITFSS--LRERISYVGQ 434
G SGSGKST+ L +++ + +DG N+R D+ FS +E I VG+
Sbjct: 31 GLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGE 87
>gnl|CDD|128386 smart00072, GuKc, Guanylate kinase homologues. Active enzymes
catalyze ATP-dependent phosphorylation of GMP to GDP.
Structure resembles that of adenylate kinase. So-called
membrane-associated guanylate kinase homologues (MAGUKs)
do not possess guanylate kinase activities; instead at
least some possess protein-binding functions.
Length = 184
Score = 29.2 bits (66), Expect = 2.8
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 383 ALVGPSGSGKSTIINLLMRMYDP 405
L GPSG GK T++ L++
Sbjct: 6 VLSGPSGVGKGTLLAELIQEIPD 28
>gnl|CDD|178371 PLN02772, PLN02772, guanylate kinase.
Length = 398
Score = 29.4 bits (66), Expect = 2.8
Identities = 12/21 (57%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Query: 386 GPSGSGKSTIINLLMRMYDPS 406
GPSG GK T+I++LM+ + PS
Sbjct: 142 GPSGVGKGTLISMLMKEF-PS 161
>gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional.
Length = 171
Score = 29.3 bits (66), Expect = 3.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 383 ALVGPSGSGKSTIINLLMRMYD 404
A++G SGSGKST+ L + Y+
Sbjct: 4 AIIGYSGSGKSTLARKLSQHYN 25
>gnl|CDD|183406 PRK12288, PRK12288, GTPase RsgA; Reviewed.
Length = 347
Score = 29.0 bits (66), Expect = 3.3
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 378 SGKMTALVGPSGSGKSTIINLLM 400
+G+++ VG SG GKS++IN L+
Sbjct: 204 TGRISIFVGQSGVGKSSLINALL 226
>gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase
subunit 1/adenylylsulfate kinase protein; Provisional.
Length = 632
Score = 29.1 bits (66), Expect = 3.5
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 384 LVGPSGSGKSTIINLL-MRMYDPSSGSIEIDGINIR-----DITFS 423
G SGSGKSTI NL+ R++ + +DG N+R D+ FS
Sbjct: 465 FTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFS 510
>gnl|CDD|148176 pfam06414, Zeta_toxin, Zeta toxin. This family consists of several
bacterial zeta toxin proteins. Zeta toxin is thought to
be part of a postregulational killing system in
bacteria. It relies on antitoxin/toxin systems that
secure stable inheritance of low and medium copy number
plasmids during cell division and kill cells that have
lost the plasmid.
Length = 191
Score = 28.8 bits (65), Expect = 3.7
Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 15/99 (15%)
Query: 384 LVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIR-------DITFSSLRERISYVGQDV 436
L G G+GK+ + L+ + ID +R ++ + ++ D
Sbjct: 17 LGGQPGAGKTELARALLEELG-GGNVVRIDPDELRTYHPDYDELQKADPKDASELTQPDA 75
Query: 437 FLFSNTV-------RYNILIGRPMATEEEMIEIAKSANA 468
+ + YNI++ + + + ++A+ A
Sbjct: 76 SRWVEKLIDYAIERGYNIILEGTLRSPDVARKLARKLKA 114
>gnl|CDD|180124 PRK05537, PRK05537, bifunctional sulfate adenylyltransferase
subunit 1/adenylylsulfate kinase protein; Validated.
Length = 568
Score = 28.9 bits (65), Expect = 3.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 384 LVGPSGSGKSTIINLLMRM 402
G SG+GKSTI LM
Sbjct: 397 FTGLSGAGKSTIAKALMVK 415
>gnl|CDD|130716 TIGR01655, yxeA_fam, conserved hypothetical protein TIGR01655.
This model represents a family of small (about 115 amino
acids) uncharacterized proteins with N-terminal signal
sequences, found exclusively in Gram-positive organisms.
Most genomes that have any members of this family have
at least two members.
Length = 114
Score = 28.6 bits (64), Expect = 4.4
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 72 VIVVSSTVAGIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSE 131
++V T+ GI I + S NYY+ + + + L +Y ++ YDS +
Sbjct: 10 ALIVVITIVGIEISHPVYSDRFNYYIKIKNDYKEVPKSKFKGYPLYEYKLDAYDS-SGKK 68
Query: 132 LQVRFTHATQS 142
+V+F T
Sbjct: 69 HKVKFMAGTNL 79
>gnl|CDD|173185 PRK14722, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 374
Score = 28.5 bits (63), Expect = 4.8
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 345 NLPVGKGTTVFRDVFFSYKQG-----HPVLSGINLCFKSGKMTALVGPSGSGKST 394
NLP G+G D + Q PVL + + G + AL+GP+G GK+T
Sbjct: 99 NLPEGEGYDTL-DAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTT 152
>gnl|CDD|130674 TIGR01613, primase_Cterm, phage/plasmid primase, P4 family,
C-terminal domain. This model represents a clade within
a larger family of proteins from viruses of bacteria and
animals. Members of this family are found in phage and
plasmids of bacteria and archaea only. The model
describes a domain of about 300 residues, found
generally toward the protein C-terminus.
Length = 304
Score = 28.5 bits (64), Expect = 5.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 380 KMTALVGPSGSGKSTIINLLMRM 402
K+ L G G+GKST NLL +
Sbjct: 77 KLFFLYGNGGNGKSTFQNLLSNL 99
>gnl|CDD|179724 PRK04040, PRK04040, adenylate kinase; Provisional.
Length = 188
Score = 28.3 bits (64), Expect = 5.0
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 379 GKMTALVGPSGSGKSTIINLLMRM 402
K+ + G G GK+T++N +
Sbjct: 2 MKVVVVTGVPGVGKTTVLNKALEK 25
>gnl|CDD|179983 PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional.
Length = 239
Score = 28.5 bits (65), Expect = 5.3
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 11/51 (21%)
Query: 425 LRE--R-ISYVGQDVFLFSNTV--RYNILIGRPMATEEEMIEIAKSANAHD 470
LRE R I +DV L T+ N+ MA EEM++IA H
Sbjct: 45 LREDRRHIRD--RDVRLLRETLKTELNL----EMAATEEMLDIALEVKPHQ 89
>gnl|CDD|167786 PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 445
Score = 28.3 bits (63), Expect = 5.6
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 532 LSRLMQGRTTIV-IAHRISTIIEADHIIFIEDGKVSESG 569
L++ T + HR+ I E + ++FI+D K + G
Sbjct: 294 REALLEHVKTFQGLPHRVEKIGEKNGVVFIDDSKGTNVG 332
>gnl|CDD|161849 TIGR00382, clpX, endopeptidase Clp ATP-binding regulatory subunit
(clpX). A member of the ATP-dependent proteases, ClpX
has ATP-dependent chaperone activity and is required for
specific ATP-dependent proteolytic activities expressed
by ClpPX. The gene is also found to be involved in
stress tolerance in Bacillus subtilis and is essential
for the efficient acquisition of genes specifying type
IA and IB restriction.
Length = 413
Score = 28.2 bits (63), Expect = 5.6
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 13/54 (24%)
Query: 384 LVGPSGSGKSTIINLLMRMYD-PSSGSIEIDGINIRDITFSSLRERISYVGQDV 436
L+GP+GSGK+ + L R+ + P I D T +L E YVG+DV
Sbjct: 121 LIGPTGSGKTLLAQTLARILNVP---------FAIADAT--TLTE-AGYVGEDV 162
>gnl|CDD|177370 PHA02530, pseT, polynucleotide kinase; Provisional.
Length = 300
Score = 28.5 bits (64), Expect = 5.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 380 KMTALVGPSGSGKST 394
K+ VG GSGKST
Sbjct: 3 KIILTVGVPGSGKST 17
>gnl|CDD|129002 smart00763, AAA_PrkA, PrkA AAA domain. This is a family of PrkA
bacterial and archaeal serine kinases approximately 630
residues long. This is the N-terminal AAA domain.
Length = 361
Score = 28.4 bits (64), Expect = 6.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 384 LVGPSGSGKSTIINLLMRMYDPSSGSIE 411
L+GP G GKS+++ L R + S + E
Sbjct: 83 LLGPVGGGKSSLVECLKRGLEEYSKTPE 110
>gnl|CDD|163021 TIGR02788, VirB11, P-type DNA transfer ATPase VirB11. The VirB11
protein is found in the vir locus of Agrobacterium Ti
plasmids where it is involved in the type IV secretion
system for DNA transfer. VirB11 is believed to be an
ATPase. VirB11 is a homolog of the P-like conjugation
system TrbB protein and the Flp pilus sytem protein
TadA.
Length = 308
Score = 28.1 bits (63), Expect = 6.1
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 372 INLCFKSGKMTALVGPSGSGKSTIINLLMRM 402
+ L S K + G +GSGK+T + L+
Sbjct: 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDE 167
>gnl|CDD|149019 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam
entry includes some of the AAA proteins not detected by
the pfam00004 model.
Length = 139
Score = 28.0 bits (63), Expect = 6.4
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 384 LVGPSGSGKSTIINLLMRMYDPSS 407
LVGP G+GKS + L
Sbjct: 4 LVGPPGTGKSELAERLAAALSNRP 27
>gnl|CDD|162400 TIGR01526, nadR_NMN_Atrans, nicotinamide-nucleotide
adenylyltransferase, NadR type. E. coli NadR has also
been found to regulate the import of its substrate,
nicotinamide ribonucleotide, but it is not known if the
other members of this model share that activity.
Length = 325
Score = 28.3 bits (63), Expect = 6.4
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 372 INLCFKS--GKMTALVGPSGSGKSTIINLLMRMYDPSS 407
I + K A++G +GKST++N L +++ +S
Sbjct: 153 IPREVRPFFVKTVAILGGESTGKSTLVNKLAAVFNTTS 190
>gnl|CDD|180730 PRK06851, PRK06851, hypothetical protein; Provisional.
Length = 367
Score = 28.0 bits (63), Expect = 6.5
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
Query: 384 LVGPSGSGKSTIIN-----LLMRMYD-----PSSGSIEIDGINIRDI 420
L G G+GKST++ L + YD SS + +DG+ I ++
Sbjct: 35 LKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDNDSLDGVIIPEL 81
>gnl|CDD|178800 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 28.2 bits (64), Expect = 6.5
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 386 GPSGSGKSTI 395
GP+GSGK T+
Sbjct: 11 GPAGSGKGTV 20
>gnl|CDD|163294 TIGR03499, FlhF, flagellar biosynthetic protein FlhF.
Length = 282
Score = 28.0 bits (63), Expect = 6.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 379 GKMTALVGPSGSGKST 394
G + ALVGP+G GK+T
Sbjct: 194 GGVIALVGPTGVGKTT 209
>gnl|CDD|162997 TIGR02746, TraC-F-type, type-IV secretion system protein TraC. The
protein family described here is common among the F, P
and I-like type IV secretion systems. Gene symbols
include TraC (F-type), TrbE/VirB4 (P-type) and TraU
(I-type). The protein conyains the Walker A and B motifs
and so is a putative nucleotide triphosphatase.
Length = 797
Score = 28.1 bits (63), Expect = 6.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 383 ALVGPSGSGKSTIINLLMR 401
A+VG SG+GKS + L+
Sbjct: 434 AVVGGSGAGKSFFMQELIV 452
>gnl|CDD|180835 PRK07094, PRK07094, biotin synthase; Provisional.
Length = 323
Score = 27.9 bits (63), Expect = 7.6
Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 26/76 (34%)
Query: 428 RISYVGQDVFL-----FSNTVRYNIL----------IGRPMATEEEMIEIAKSANAHDFI 472
R YVG +V L FSN R N L I R + EE++E AK A
Sbjct: 29 RKKYVGDEVHLRGLIEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECAKKAYE---- 84
Query: 473 MSLPQGYDTYV---GE 485
GY T V GE
Sbjct: 85 ----LGYRTIVLQSGE 96
>gnl|CDD|182794 PRK10869, PRK10869, recombination and repair protein; Provisional.
Length = 553
Score = 27.6 bits (62), Expect = 9.3
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 376 FKSGKMTALVGPSGSGKSTIINLL 399
F+SG MT + G +G+GKS I+ L
Sbjct: 20 FQSG-MTVITGETGAGKSIAIDAL 42
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.324 0.137 0.384
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 9,618,431
Number of extensions: 643600
Number of successful extensions: 2748
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2485
Number of HSP's successfully gapped: 407
Length of query: 596
Length of database: 5,994,473
Length adjustment: 99
Effective length of query: 497
Effective length of database: 3,855,281
Effective search space: 1916074657
Effective search space used: 1916074657
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.1 bits)