BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide
binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62]
(596 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 596
Score = 1222 bits (3161), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/596 (100%), Positives = 596/596 (100%)
Query: 1 MRNFFFVLDKVMSPSDREMLSRLIRENIHKHVTWYSMSIVAMITVSLMTSCSAWIMRDVM 60
MRNFFFVLDKVMSPSDREMLSRLIRENIHKHVTWYSMSIVAMITVSLMTSCSAWIMRDVM
Sbjct: 1 MRNFFFVLDKVMSPSDREMLSRLIRENIHKHVTWYSMSIVAMITVSLMTSCSAWIMRDVM 60
Query: 61 NAMVASTDIFHVIVVSSTVAGIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYG 120
NAMVASTDIFHVIVVSSTVAGIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYG
Sbjct: 61 NAMVASTDIFHVIVVSSTVAGIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYG 120
Query: 121 MEFYDSNQSSELQVRFTHATQSVRSVVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTI 180
MEFYDSNQSSELQVRFTHATQSVRSVVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTI
Sbjct: 121 MEFYDSNQSSELQVRFTHATQSVRSVVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTI 180
Query: 181 IIGPLCILGVRILVKRVRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCN 240
IIGPLCILGVRILVKRVRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCN
Sbjct: 181 IIGPLCILGVRILVKRVRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCN 240
Query: 241 MIKEVEDRLNKVAKIESATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITAL 300
MIKEVEDRLNKVAKIESATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITAL
Sbjct: 241 MIKEVEDRLNKVAKIESATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITAL 300
Query: 301 LMAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPIMIEESPHAVNLPVGKGTTVFRDVFF 360
LMAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPIMIEESPHAVNLPVGKGTTVFRDVFF
Sbjct: 301 LMAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPIMIEESPHAVNLPVGKGTTVFRDVFF 360
Query: 361 SYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI 420
SYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI
Sbjct: 361 SYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI 420
Query: 421 TFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYD 480
TFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYD
Sbjct: 421 TFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYD 480
Query: 481 TYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRT 540
TYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRT
Sbjct: 481 TYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRT 540
Query: 541 TIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLENLS 596
TIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLENLS
Sbjct: 541 TIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLENLS 596
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 235 bits (600), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 120/264 (45%), Positives = 171/264 (64%), Gaps = 2/264 (0%)
Query: 327 MFSLLDHPIMIEESPHAVNLPVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVG 386
+ ++L+ I I+ + ++ +L + G VF +V FSY + + GI+ K TAL+G
Sbjct: 331 LLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIG 390
Query: 387 PSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYN 446
SG GKST+ LL R+YD G I IDG +I+ IT SLR+ I + QD LF++T+RYN
Sbjct: 391 ESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYN 450
Query: 447 ILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLR 506
IL G P A+++E+ + A FIM LP GYDT VGE G LSGG+KQR++IARA+L+
Sbjct: 451 ILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILK 510
Query: 507 DGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVS 566
+ I++ DEATS+LD TE ++ AL+ L + RTT+VIAHR+STI +AD+II + G V
Sbjct: 511 NPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVV 570
Query: 567 ESGDQKYLLQQKDGSLYKKMYASQ 590
ESG + L+ Q G +Y M+ Q
Sbjct: 571 ESGSHENLISQ--GGIYTSMWKKQ 592
>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
subunits [Candidatus Liberibacter asiaticus str. psy62]
Length = 528
Score = 186 bits (471), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 142/229 (62%), Gaps = 2/229 (0%)
Query: 351 GTTVFRDVFFSY--KQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSG 408
G+ FR V F Y K +L +N + G+ ALVG SG+GK++I +L++R YDP SG
Sbjct: 286 GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSG 345
Query: 409 SIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANA 468
S+EI+GI++R ++ +R I++V Q + + +V NI IG P AT +E+ A A A
Sbjct: 346 SVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQA 405
Query: 469 HDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528
H+FI L GYDT +G+ +LS GQ QRIAIARA+L+D IL+LDE SALD E +
Sbjct: 406 HEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI 465
Query: 529 RQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQ 577
+ L +GRTTI +HR+S I +AD + + D + E G + LL++
Sbjct: 466 WKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKK 514
Score = 31.6 bits (70), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 94 NYYLSCA---GNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSVVDIF 150
YY CA G +I QR + ++++ F++S E+ T+ +++++ I
Sbjct: 31 RYY--CATMLGERMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSILVKDTERIKAIIGIG 88
Query: 151 ITSFLRDFLTLVGLIVVMFLQEPTLSLCTIII 182
++ LR L G + +MF+ LSL + I
Sbjct: 89 MSIVLRSLLMGFGAMCMMFVISIKLSLIVVSI 120
>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 227
Score = 76.3 bits (186), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 110/224 (49%), Gaps = 15/224 (6%)
Query: 354 VFRDVFFSYKQ---GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSI 410
+ ++V SY+Q PVL ++L K G++ ALV PSG+GKSTI+++ + P G++
Sbjct: 8 LLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNV 67
Query: 411 EIDGI---NIRDITFSSLR-ERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKS 465
I + D S LR +I +V Q+ L + +V NI+ + +A ++
Sbjct: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRA 127
Query: 466 ANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTE 525
+ + M + Q Y S++SGG++QR+AI RA+ I++ DE T LD T
Sbjct: 128 MDLLSY-MDMSQ----YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTA 182
Query: 526 NLVRQALSRLM--QGRTTIVIAHRISTIIEADHIIFIEDGKVSE 567
V L L+ G ++ H + D I I DG +++
Sbjct: 183 QQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 254
Score = 75.5 bits (184), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 94/194 (48%), Gaps = 22/194 (11%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDP-----SSGSIEIDGINI--RDI 420
L INL +TAL+GPSG GKST + L RM + +G I +DG NI +
Sbjct: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSV 80
Query: 421 TFSSLRERISYVGQDVFLFSNTVRYNIL-------IGRPMATEEEMIEIA-KSANAHDFI 472
LR R+ V Q F ++ N+ +G A ++++E++ K A
Sbjct: 81 DVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKA------ 134
Query: 473 MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL 532
SL + + S LSGGQ+QR+ IARA+ + ++++DE SALD V + +
Sbjct: 135 -SLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELI 193
Query: 533 SRLMQGRTTIVIAH 546
L + T +++ H
Sbjct: 194 HELRESLTIVIVTH 207
>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 438
Score = 73.9 bits (180), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 103/209 (49%), Gaps = 19/209 (9%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427
VL +N SG++ L+G SGSGKST++ ++ + PSSG + G I+D +
Sbjct: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP-----K 86
Query: 428 RISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGEN 486
IS V Q LF TV N+ +G ++ ++ +A D I G D + +
Sbjct: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-----GLDGFESAH 141
Query: 487 GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHT-ENLVRQALSRLMQGRTTI--- 542
+ +SGG QR+ ARA + +L++DE SALD T ENL + ++GR I
Sbjct: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESM 201
Query: 543 -VIAHRI-STIIEADHIIFI--EDGKVSE 567
++ H I ++ D ++ G+++E
Sbjct: 202 LMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 234
Score = 73.2 bits (178), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 31/206 (15%)
Query: 384 LVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRER-ISYVGQDVFLFSN- 441
++GPSG+GKST+++L+ P+ GSI ++G N T SS +R +S + Q+ LFS+
Sbjct: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNH---TRSSPSKRPLSILFQENNLFSHL 86
Query: 442 TVRYNILIG---------RPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSG 492
TV NI +G A ++M+E DF P S +SG
Sbjct: 87 TVWQNIALGIAPNLRLDHYQHAQVKQMLE---KVFLEDFFNRFP-----------SQMSG 132
Query: 493 GQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGR--TTIVIAHRIST 550
GQ+QR+A+AR ++R IL+LDE + D + + L ++ R T ++I+H +
Sbjct: 133 GQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLED 192
Query: 551 IIE-ADHIIFIEDGKVSESGDQKYLL 575
++ A I I G++ GD L+
Sbjct: 193 SMQIATRFIVIAGGQIVYDGDPDRLM 218
>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of
ABC transporter protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 240
Score = 70.5 bits (171), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 120/241 (49%), Gaps = 33/241 (13%)
Query: 362 YKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT 421
+K G+ +L IN K ++ L+GP+GSGKSTI L+ + P+ GS++ I
Sbjct: 19 HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---- 74
Query: 422 FSSLRERISYVGQDVFLFSNTVRYNIL----IGRPMATEEEMIEIAKSANAHDFIMSLPQ 477
+ YV Q V + NT+ +++ + P ++ +++++I N L
Sbjct: 75 -------VGYVPQKVTI-ENTLPLSLMRFMTLSMP-SSRDDVLQILDRVN-------LIG 118
Query: 478 GYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ 537
Y+ N +LSGG+ QR +A+A+LR ++LVLDE +D E + + ++ + Q
Sbjct: 119 KYN----RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174
Query: 538 --GRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLENL 595
G ++I+H + ++ + + + ++ G + + KD + Y +++ ++ E L
Sbjct: 175 STGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQTI---KDNAEYIRLFGTRATEIL 231
Query: 596 S 596
+
Sbjct: 232 A 232
>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
asiaticus str. psy62]
Length = 565
Score = 69.7 bits (169), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 117/270 (43%), Gaps = 10/270 (3%)
Query: 289 NAGEIM--SFITALLMAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPIMIEES---PHA 343
+AG I+ S ITA MA P ++I ++ L G+ ++ + +L D ++ S
Sbjct: 264 SAGAIIATSIITARAMA--PLEQIINSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEP 321
Query: 344 VNLPVGKGTTVFRDVFFSYKQ-GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRM 402
+++ + T +++ F K+ + ++ G + GPSG GKS + ++ +
Sbjct: 322 ISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGL 381
Query: 403 YDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEI 462
G+I I +I Y+ Q LF ++ NI++ + +
Sbjct: 382 LTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKT 441
Query: 463 AKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDT 522
AK H+ I+SL GY T + + Q+I ++R + + IL++DE LD
Sbjct: 442 AKIVGCHEDILSLKNGYQTTYCSD--EIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDN 499
Query: 523 HTENLVRQALSRLMQGRTTIVIAHRISTII 552
+N L + + + TIVI TII
Sbjct: 500 EAKNNFYTLLKQFKENKKTIVIISHDPTII 529
>gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 262
Score = 68.9 bits (167), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 103/199 (51%), Gaps = 15/199 (7%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT-FSSLR 426
V+ G++L K G++ L+GP+G+GK+T ++ + SGSI+IDG +I + + R
Sbjct: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
Query: 427 ERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGE 485
ISY+ Q+ +F TV NIL E+ E K H+ + SL + ++
Sbjct: 100 LGISYLPQEASIFRGLTVEENIL------AVLEVYEKDKKKR-HEKLDSLLKEFNITKWR 152
Query: 486 N--GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD----THTENLVRQALSRLMQGR 539
+ LSGGQ++R+ IAR+++ ++LDE + +D + L+R SR +
Sbjct: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212
Query: 540 TTIVIAHRISTIIEADHII 558
T H I T+I+ +II
Sbjct: 213 ITDHNVHEILTLIDRAYII 231
>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
[Candidatus Liberibacter asiaticus str. psy62]
Length = 280
Score = 64.3 bits (155), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 29/227 (12%)
Query: 350 KGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGS 409
KG +D+ +Y G+ L +NL +TAL+G +G+GKST+ +M + GS
Sbjct: 9 KGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS 68
Query: 410 IEIDGINIRDITFSSLRERISYVGQ-------------DVFLFSNTVRYNILIGRPMATE 456
I I + + + L I+Y+ Q DV + RY + R +A+
Sbjct: 69 ISIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMG---RYKHMNWRRVASN 122
Query: 457 EEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEA 516
+ I A + + S+ Q +GE LS GQ++R+ +ARA+ + ++++DE
Sbjct: 123 NDY-RIVTEALENVGMSSMRQ---RQIGE----LSIGQQKRVFLARALAQKSQVIIMDEP 174
Query: 517 TSALDTHTENLVRQALSRLMQGRTTIVIA-HRISTIIE-ADHIIFIE 561
+A+D TE + L L+ I+++ H I++I D IF++
Sbjct: 175 FAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLK 221
>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 257
Score = 64.3 bits (155), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 106/209 (50%), Gaps = 15/209 (7%)
Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI--TFSSLR 426
L INL G+ + GPSGSGKST+I + + +G I I+GI + D +R
Sbjct: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVR 92
Query: 427 ERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGE 485
+ V Q LFSN +V N +G P+ + + A+ H ++ + ++
Sbjct: 93 RDVGMVFQHFNLFSNLSVLENCTLG-PIWVRKMPKKDAEELAMH-YLNKVKIADKSH--R 148
Query: 486 NGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM----QGRTT 541
+ S LSGG+ QR AIAR++ I++ DE TSALD +V++ L ++ +G T
Sbjct: 149 SSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPE---MVKEVLDIMIELAEEGMTM 205
Query: 542 IVIAHRISTIIE-ADHIIFIEDGKVSESG 569
+ + H + + AD ++F++ G++ E
Sbjct: 206 VCVTHEMGFARQVADRVVFMDQGQIVEQN 234
>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 249
Score = 56.2 bits (134), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 110/225 (48%), Gaps = 33/225 (14%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLL--MRMYDPSSGSIEIDGINIRDITFSSL 425
++ G+NL + ++ A++GP+GSGKST+ LL + Y+ ++G I G +I D S+
Sbjct: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILD---WSI 74
Query: 426 RERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIA-----KSANAHDFIM-SLPQGY 479
ER S + +FL +Y + I P + ++IA K+ N + ++ +
Sbjct: 75 VERAS---KGIFL---AFQYPVEI--PGIIMMQFLKIALNEQRKARNEKELLIPDFTRKV 126
Query: 480 DTYVGENGSNL-----------SGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528
E G N+ SGG+K+ I + L + + +LDE S LD +
Sbjct: 127 RKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIA 186
Query: 529 RQALSRLM-QGRTTIVIAH--RISTIIEADHIIFIEDGKVSESGD 570
Q ++ L Q R+ ++I H R+ I+ D I + +GK+ ++GD
Sbjct: 187 AQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 610
Score = 55.5 bits (132), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 16/179 (8%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427
V+ +L G+ +VGP+G+GK+T++ LL P G I + G N++ T RE
Sbjct: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATIDQKRE 357
Query: 428 RISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENG 487
I D L S + G + E +A DF+ Q +
Sbjct: 358 DID---PDKSLASYLTGSS---GDSLMVRGESRHVA--GYIKDFLFHPDQAHSLM----- 404
Query: 488 SNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAH 546
+LSGG+K R +AR + + + L++DE T+ LD T + + + +++L QG T ++++H
Sbjct: 405 KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL-QG-TILIVSH 461
Score = 47.4 bits (111), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 25/170 (14%)
Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427
+L + L K + LVG +GSGKST++ + + +P SG++ F
Sbjct: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNV-----------FLHSSS 68
Query: 428 RISYVGQ--DVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGE 485
R+ Y+ Q D+ FS +Y T ++ IE S SL + ++ +
Sbjct: 69 RLGYLEQNPDLSHFSTISQY------IDDTIKDTIEAPYSP------YSLLKKFNLREQD 116
Query: 486 NGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRL 535
NLS GQ + +A+ + ++ IL+LDE T+ LD T + + Q L ++
Sbjct: 117 RIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI 166
>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 539
Score = 53.9 bits (128), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 30/197 (15%)
Query: 373 NLCFK--SGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERIS 430
NL FK G + ++GP+G+GK+T+ +L P SG+I + G + +S
Sbjct: 335 NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVC----------LS 383
Query: 431 YVGQ--DVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDF-IMSLPQGYDTYVGENG 487
YV Q D TV +I G ++++++ N H+ + ++ G+
Sbjct: 384 YVDQSRDSLEAEKTVWEDISGG------DDIVKL----NGHEINSRAYCSAFNFKGGDQQ 433
Query: 488 ---SNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVI 544
+LSGGQ+ R+ +A+ + G++++LDE T+ LDT T + + AL G I+
Sbjct: 434 QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA-GCAVIIS 492
Query: 545 AHRISTIIEADHIIFIE 561
R+ A HI+ E
Sbjct: 493 HDRMFLDRLATHILAFE 509
Score = 40.0 bits (92), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 87/195 (44%), Gaps = 46/195 (23%)
Query: 358 VFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINI 417
VF S K VL INL F ++GP+G+GKSTI+ ++ + E +G
Sbjct: 15 VFGSKK----VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI------DKEYNGEAW 64
Query: 418 RDITFSSLRERISYVGQDVFL-FSNTVRYNILIG-----------------RPMATEEEM 459
F+ + Y+ Q+ L S TV+ NI+ G TEEE+
Sbjct: 65 LATGFT-----VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119
Query: 460 I---EIAKSANAHDF-------IMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGH 509
+I S D I SL D G N ++LSGG+K+R+A+ + +L
Sbjct: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPAD---GLNITSLSGGEKRRVALCKLLLSSPD 176
Query: 510 ILVLDEATSALDTHT 524
+L+LDE T+ LD T
Sbjct: 177 LLLLDEPTNHLDAET 191
>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 348
Score = 52.4 bits (124), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 26/238 (10%)
Query: 373 NLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG----INIRDITFSSLRE- 427
NL K G++ L+G SG+GKST++ + + G + +D +N + LR+
Sbjct: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
Query: 428 ---RISYVGQDVFLFS-NTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYV 483
+S V Q L TV N+ +G + +E H I++L + D +
Sbjct: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPD-VERKSRVAEHLEIVNLTKWADCKI 167
Query: 484 GENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQ---ALSRLMQGRT 540
+ LSGG KQR+ ARA IL++DE S+LD ++ AL R ++ +T
Sbjct: 168 ----NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK-KT 222
Query: 541 TIVIAHRISTIIE-ADHIIFIEDGKVSESG-DQKYLLQQKDGSLYKKMYASQLLENLS 596
+ ++H I+ + I +E G++ + G Q+ +L + Y S+ ++ L+
Sbjct: 223 IVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPAN------CYVSEFIQKLN 274
>gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus
Liberibacter asiaticus str. psy62]
Length = 257
Score = 44.7 bits (104), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 93/186 (50%), Gaps = 21/186 (11%)
Query: 379 GKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINI------RDITFSSLRERISYV 432
G++ ++G SG+GKS ++ ++ + SG +++ G ++ ++ FS+ ++ +
Sbjct: 39 GEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSA---KLGVL 95
Query: 433 GQDVFLFSN-TVRYNI--LIGRPMATEEEMIE-IAKSANAHDFIMSLPQGYDTYVGENGS 488
Q LFS+ TV+ NI I + ++IE I + A I+ LP +
Sbjct: 96 FQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIA---IVGLPPETANLMP---F 149
Query: 489 NLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--GRTTIVIAH 546
LSGG +R+++ARA+ D +L LDE TS LD + L +L G + +I H
Sbjct: 150 QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITH 209
Query: 547 RISTII 552
++ +I
Sbjct: 210 DLNNLI 215
>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
psy62]
Length = 959
Score = 42.7 bits (99), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 453 MATEEEMIEIAKSANAHDFIMSLPQ---GYDTYVGENGSNLSGGQKQRIAIARAMLRD-- 507
M +E + A H+ + +L + GY +G++ + LSGG+ QR+ +A+ + +
Sbjct: 807 MTVDESLDFFAAIPTIHNKLTTLKEVGLGY-IKIGQSANTLSGGESQRVKLAKELSKQAT 865
Query: 508 GHIL-VLDEATSALDTHTENLVRQALSRLM-QGRTTIVIAHRISTIIEADHII 558
G+ L +LDE T+ L H + L L+ +G + IVI H + I AD I+
Sbjct: 866 GNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVIKTADWIL 918
Score = 36.2 bits (82), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 486 NGSNLSGGQKQRIAIARAM--LRDGHILVLDEATSALDTHTENLVRQALSRLMQ-GRTTI 542
N + LS G+ QRI +A + G + +LDE + L + L L G T I
Sbjct: 500 NSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVI 559
Query: 543 VIAHRISTIIEADHIIFI 560
V+ H T++ ADHI+ I
Sbjct: 560 VVEHDEETMLAADHIVDI 577
>gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 246
Score = 28.5 bits (62), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 379 GKMTALVGPSGSGKSTIINL 398
++ LVGPSGSGKS + N+
Sbjct: 64 SRVVILVGPSGSGKSCLANI 83
>gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 468
Score = 26.6 bits (57), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 544 IAHRISTIIEADHIIFIEDGKVS 566
+ HR+ TI H+IFI D K +
Sbjct: 312 LTHRLQTIARLGHVIFINDSKAT 334
>gi|255764505|ref|YP_003065248.2| polysialic acid capsule expression protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 341
Score = 26.6 bits (57), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 90 SFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSV 146
S ++N + CA SIIAE++ G+ +S+ EL +F A + ++++
Sbjct: 17 SLMKNSTVQCALRSIIAEKR----------GLSSLESSLQGELSFQFHCAVEKIKAI 63
>gi|254780369|ref|YP_003064782.1| Electron transfer flavoprotein alpha subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 318
Score = 26.6 bits (57), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 486 NGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIA 545
N NLS + + A+ + D H+LVL + + EN+ +QA +QG T +++A
Sbjct: 15 NQENLSEQTARIVTAAQKISHDIHVLVLGD-------NIENIAQQAAR--IQGVTQVIVA 65
Query: 546 H 546
Sbjct: 66 Q 66
>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
Liberibacter asiaticus str. psy62]
Length = 424
Score = 25.8 bits (55), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 384 LVGPSGSGKSTIINLLMRMYD 404
LVGP+G GK+ + L R+ D
Sbjct: 118 LVGPTGCGKTYLAQTLARIID 138
>gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 437
Score = 25.4 bits (54), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 28/129 (21%)
Query: 384 LVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTV 443
LVGP+G GK+ I L R+ +E+ F+ I YVG++V +
Sbjct: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEV-------TKFTE----IGYVGRNV---EQII 103
Query: 444 RYNILIGRPMATEEEMIEIAKSA--NAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIA 501
R + + + E E+ + A NA + I+ D VG+ ++ + +
Sbjct: 104 RDLVDVAINIVRESRRDEVREQASINAEERIL------DALVGKTATSNTR------EVF 151
Query: 502 RAMLRDGHI 510
R LRDG I
Sbjct: 152 RKKLRDGEI 160
>gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str.
psy62]
Length = 483
Score = 25.4 bits (54), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 386 GPSGSGKSTIINLLMRMYD 404
G +GSGK+T++N L R D
Sbjct: 257 GGTGSGKTTLLNCLTRYID 275
>gi|254781091|ref|YP_003065504.1| putative pyridoxal-phosphate-dependent aminotransferase protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 383
Score = 25.4 bits (54), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 8/32 (25%)
Query: 334 PIMIEE--------SPHAVNLPVGKGTTVFRD 357
P+ IEE S H + PVG G VFR+
Sbjct: 189 PLSIEEIKADFLIISSHKLGAPVGAGALVFRE 220
>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 853
Score = 25.0 bits (53), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 384 LVGPSGSGKSTIINLLMR-MYDPSSGSIEID 413
+GP+G GK+ ++ L R ++D + I ID
Sbjct: 603 FLGPTGVGKTELVKSLARLLFDDENSMIRID 633
>gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 963
Score = 24.6 bits (52), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 479 YDTYVGENGSNLSGGQKQRIAIARAML 505
+DT V NGS ++G ++RIAI R+++
Sbjct: 878 FDT-VKFNGSLMTGSTEKRIAILRSII 903
>gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str.
psy62]
Length = 311
Score = 24.6 bits (52), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 383 ALVGPSGSGKSTIIN 397
ALVG + +GKST++N
Sbjct: 26 ALVGATNAGKSTLVN 40
>gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 920
Score = 24.3 bits (51), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 378 SGKMTALVGPSGSGKSTII 396
SGK+ L GP+ GKST +
Sbjct: 649 SGKLWLLTGPNMGGKSTFL 667
>gi|254780976|ref|YP_003065389.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus
str. psy62]
Length = 160
Score = 24.3 bits (51), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 280 FLMSKKGTSNAGEIMSFIT 298
FL+ KK T A E++SFIT
Sbjct: 46 FLVRKKVTQTALELLSFIT 64
>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 789
Score = 24.3 bits (51), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 349 GKGTTVFRDVFFSYKQGHPVLSGINLCF--------KSGKMTALVGPSGSGKSTIINLL 399
G+ + F D+ Y + V+ C K+ + + G GSGKST++NL+
Sbjct: 463 GEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.324 0.137 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 353,043
Number of Sequences: 1233
Number of extensions: 14007
Number of successful extensions: 121
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 49
length of query: 596
length of database: 328,796
effective HSP length: 79
effective length of query: 517
effective length of database: 231,389
effective search space: 119628113
effective search space used: 119628113
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 41 (20.4 bits)