BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] (596 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 596 Score = 1222 bits (3161), Expect = 0.0, Method: Compositional matrix adjust. Identities = 596/596 (100%), Positives = 596/596 (100%) Query: 1 MRNFFFVLDKVMSPSDREMLSRLIRENIHKHVTWYSMSIVAMITVSLMTSCSAWIMRDVM 60 MRNFFFVLDKVMSPSDREMLSRLIRENIHKHVTWYSMSIVAMITVSLMTSCSAWIMRDVM Sbjct: 1 MRNFFFVLDKVMSPSDREMLSRLIRENIHKHVTWYSMSIVAMITVSLMTSCSAWIMRDVM 60 Query: 61 NAMVASTDIFHVIVVSSTVAGIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYG 120 NAMVASTDIFHVIVVSSTVAGIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYG Sbjct: 61 NAMVASTDIFHVIVVSSTVAGIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYG 120 Query: 121 MEFYDSNQSSELQVRFTHATQSVRSVVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTI 180 MEFYDSNQSSELQVRFTHATQSVRSVVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTI Sbjct: 121 MEFYDSNQSSELQVRFTHATQSVRSVVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTI 180 Query: 181 IIGPLCILGVRILVKRVRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCN 240 IIGPLCILGVRILVKRVRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCN Sbjct: 181 IIGPLCILGVRILVKRVRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCN 240 Query: 241 MIKEVEDRLNKVAKIESATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITAL 300 MIKEVEDRLNKVAKIESATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITAL Sbjct: 241 MIKEVEDRLNKVAKIESATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITAL 300 Query: 301 LMAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPIMIEESPHAVNLPVGKGTTVFRDVFF 360 LMAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPIMIEESPHAVNLPVGKGTTVFRDVFF Sbjct: 301 LMAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPIMIEESPHAVNLPVGKGTTVFRDVFF 360 Query: 361 SYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI 420 SYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI Sbjct: 361 SYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI 420 Query: 421 TFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYD 480 TFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYD Sbjct: 421 TFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYD 480 Query: 481 TYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRT 540 TYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRT Sbjct: 481 TYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRT 540 Query: 541 TIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLENLS 596 TIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLENLS Sbjct: 541 TIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLENLS 596 >gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 597 Score = 235 bits (600), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 120/264 (45%), Positives = 171/264 (64%), Gaps = 2/264 (0%) Query: 327 MFSLLDHPIMIEESPHAVNLPVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVG 386 + ++L+ I I+ + ++ +L + G VF +V FSY + + GI+ K TAL+G Sbjct: 331 LLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIG 390 Query: 387 PSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYN 446 SG GKST+ LL R+YD G I IDG +I+ IT SLR+ I + QD LF++T+RYN Sbjct: 391 ESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYN 450 Query: 447 ILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLR 506 IL G P A+++E+ + A FIM LP GYDT VGE G LSGG+KQR++IARA+L+ Sbjct: 451 ILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILK 510 Query: 507 DGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVS 566 + I++ DEATS+LD TE ++ AL+ L + RTT+VIAHR+STI +AD+II + G V Sbjct: 511 NPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVV 570 Query: 567 ESGDQKYLLQQKDGSLYKKMYASQ 590 ESG + L+ Q G +Y M+ Q Sbjct: 571 ESGSHENLISQ--GGIYTSMWKKQ 592 >gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane subunits [Candidatus Liberibacter asiaticus str. psy62] Length = 528 Score = 186 bits (471), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 98/229 (42%), Positives = 142/229 (62%), Gaps = 2/229 (0%) Query: 351 GTTVFRDVFFSY--KQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSG 408 G+ FR V F Y K +L +N + G+ ALVG SG+GK++I +L++R YDP SG Sbjct: 286 GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSG 345 Query: 409 SIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANA 468 S+EI+GI++R ++ +R I++V Q + + +V NI IG P AT +E+ A A A Sbjct: 346 SVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQA 405 Query: 469 HDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528 H+FI L GYDT +G+ +LS GQ QRIAIARA+L+D IL+LDE SALD E + Sbjct: 406 HEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI 465 Query: 529 RQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQ 577 + L +GRTTI +HR+S I +AD + + D + E G + LL++ Sbjct: 466 WKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKK 514 Score = 31.6 bits (70), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 5/92 (5%) Query: 94 NYYLSCA---GNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSVVDIF 150 YY CA G +I QR + ++++ F++S E+ T+ +++++ I Sbjct: 31 RYY--CATMLGERMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSILVKDTERIKAIIGIG 88 Query: 151 ITSFLRDFLTLVGLIVVMFLQEPTLSLCTIII 182 ++ LR L G + +MF+ LSL + I Sbjct: 89 MSIVLRSLLMGFGAMCMMFVISIKLSLIVVSI 120 >gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus Liberibacter asiaticus str. psy62] Length = 227 Score = 76.3 bits (186), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 110/224 (49%), Gaps = 15/224 (6%) Query: 354 VFRDVFFSYKQ---GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSI 410 + ++V SY+Q PVL ++L K G++ ALV PSG+GKSTI+++ + P G++ Sbjct: 8 LLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNV 67 Query: 411 EIDGI---NIRDITFSSLR-ERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKS 465 I + D S LR +I +V Q+ L + +V NI+ + +A ++ Sbjct: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRA 127 Query: 466 ANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTE 525 + + M + Q Y S++SGG++QR+AI RA+ I++ DE T LD T Sbjct: 128 MDLLSY-MDMSQ----YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTA 182 Query: 526 NLVRQALSRLM--QGRTTIVIAHRISTIIEADHIIFIEDGKVSE 567 V L L+ G ++ H + D I I DG +++ Sbjct: 183 QQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226 >gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 254 Score = 75.5 bits (184), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 94/194 (48%), Gaps = 22/194 (11%) Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDP-----SSGSIEIDGINI--RDI 420 L INL +TAL+GPSG GKST + L RM + +G I +DG NI + Sbjct: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSV 80 Query: 421 TFSSLRERISYVGQDVFLFSNTVRYNIL-------IGRPMATEEEMIEIA-KSANAHDFI 472 LR R+ V Q F ++ N+ +G A ++++E++ K A Sbjct: 81 DVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKA------ 134 Query: 473 MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL 532 SL + + S LSGGQ+QR+ IARA+ + ++++DE SALD V + + Sbjct: 135 -SLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELI 193 Query: 533 SRLMQGRTTIVIAH 546 L + T +++ H Sbjct: 194 HELRESLTIVIVTH 207 >gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 73.9 bits (180), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 103/209 (49%), Gaps = 19/209 (9%) Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427 VL +N SG++ L+G SGSGKST++ ++ + PSSG + G I+D + Sbjct: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP-----K 86 Query: 428 RISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGEN 486 IS V Q LF TV N+ +G ++ ++ +A D I G D + + Sbjct: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-----GLDGFESAH 141 Query: 487 GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHT-ENLVRQALSRLMQGRTTI--- 542 + +SGG QR+ ARA + +L++DE SALD T ENL + ++GR I Sbjct: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESM 201 Query: 543 -VIAHRI-STIIEADHIIFI--EDGKVSE 567 ++ H I ++ D ++ G+++E Sbjct: 202 LMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 >gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 234 Score = 73.2 bits (178), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 31/206 (15%) Query: 384 LVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRER-ISYVGQDVFLFSN- 441 ++GPSG+GKST+++L+ P+ GSI ++G N T SS +R +S + Q+ LFS+ Sbjct: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNH---TRSSPSKRPLSILFQENNLFSHL 86 Query: 442 TVRYNILIG---------RPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSG 492 TV NI +G A ++M+E DF P S +SG Sbjct: 87 TVWQNIALGIAPNLRLDHYQHAQVKQMLE---KVFLEDFFNRFP-----------SQMSG 132 Query: 493 GQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGR--TTIVIAHRIST 550 GQ+QR+A+AR ++R IL+LDE + D + + L ++ R T ++I+H + Sbjct: 133 GQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLED 192 Query: 551 IIE-ADHIIFIEDGKVSESGDQKYLL 575 ++ A I I G++ GD L+ Sbjct: 193 SMQIATRFIVIAGGQIVYDGDPDRLM 218 >gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] Length = 240 Score = 70.5 bits (171), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 60/241 (24%), Positives = 120/241 (49%), Gaps = 33/241 (13%) Query: 362 YKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT 421 +K G+ +L IN K ++ L+GP+GSGKSTI L+ + P+ GS++ I Sbjct: 19 HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---- 74 Query: 422 FSSLRERISYVGQDVFLFSNTVRYNIL----IGRPMATEEEMIEIAKSANAHDFIMSLPQ 477 + YV Q V + NT+ +++ + P ++ +++++I N L Sbjct: 75 -------VGYVPQKVTI-ENTLPLSLMRFMTLSMP-SSRDDVLQILDRVN-------LIG 118 Query: 478 GYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ 537 Y+ N +LSGG+ QR +A+A+LR ++LVLDE +D E + + ++ + Q Sbjct: 119 KYN----RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174 Query: 538 --GRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLENL 595 G ++I+H + ++ + + + ++ G + + KD + Y +++ ++ E L Sbjct: 175 STGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQTI---KDNAEYIRLFGTRATEIL 231 Query: 596 S 596 + Sbjct: 232 A 232 >gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter asiaticus str. psy62] Length = 565 Score = 69.7 bits (169), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/270 (23%), Positives = 117/270 (43%), Gaps = 10/270 (3%) Query: 289 NAGEIM--SFITALLMAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPIMIEES---PHA 343 +AG I+ S ITA MA P ++I ++ L G+ ++ + +L D ++ S Sbjct: 264 SAGAIIATSIITARAMA--PLEQIINSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEP 321 Query: 344 VNLPVGKGTTVFRDVFFSYKQ-GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRM 402 +++ + T +++ F K+ + ++ G + GPSG GKS + ++ + Sbjct: 322 ISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGL 381 Query: 403 YDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEI 462 G+I I +I Y+ Q LF ++ NI++ + + Sbjct: 382 LTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKT 441 Query: 463 AKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDT 522 AK H+ I+SL GY T + + Q+I ++R + + IL++DE LD Sbjct: 442 AKIVGCHEDILSLKNGYQTTYCSD--EIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDN 499 Query: 523 HTENLVRQALSRLMQGRTTIVIAHRISTII 552 +N L + + + TIVI TII Sbjct: 500 EAKNNFYTLLKQFKENKKTIVIISHDPTII 529 >gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 262 Score = 68.9 bits (167), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 103/199 (51%), Gaps = 15/199 (7%) Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT-FSSLR 426 V+ G++L K G++ L+GP+G+GK+T ++ + SGSI+IDG +I + + R Sbjct: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 Query: 427 ERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGE 485 ISY+ Q+ +F TV NIL E+ E K H+ + SL + ++ Sbjct: 100 LGISYLPQEASIFRGLTVEENIL------AVLEVYEKDKKKR-HEKLDSLLKEFNITKWR 152 Query: 486 N--GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD----THTENLVRQALSRLMQGR 539 + LSGGQ++R+ IAR+++ ++LDE + +D + L+R SR + Sbjct: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212 Query: 540 TTIVIAHRISTIIEADHII 558 T H I T+I+ +II Sbjct: 213 ITDHNVHEILTLIDRAYII 231 >gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron) [Candidatus Liberibacter asiaticus str. psy62] Length = 280 Score = 64.3 bits (155), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 29/227 (12%) Query: 350 KGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGS 409 KG +D+ +Y G+ L +NL +TAL+G +G+GKST+ +M + GS Sbjct: 9 KGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS 68 Query: 410 IEIDGINIRDITFSSLRERISYVGQ-------------DVFLFSNTVRYNILIGRPMATE 456 I I + + + L I+Y+ Q DV + RY + R +A+ Sbjct: 69 ISIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMG---RYKHMNWRRVASN 122 Query: 457 EEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEA 516 + I A + + S+ Q +GE LS GQ++R+ +ARA+ + ++++DE Sbjct: 123 NDY-RIVTEALENVGMSSMRQ---RQIGE----LSIGQQKRVFLARALAQKSQVIIMDEP 174 Query: 517 TSALDTHTENLVRQALSRLMQGRTTIVIA-HRISTIIE-ADHIIFIE 561 +A+D TE + L L+ I+++ H I++I D IF++ Sbjct: 175 FAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLK 221 >gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 64.3 bits (155), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 106/209 (50%), Gaps = 15/209 (7%) Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI--TFSSLR 426 L INL G+ + GPSGSGKST+I + + +G I I+GI + D +R Sbjct: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVR 92 Query: 427 ERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGE 485 + V Q LFSN +V N +G P+ + + A+ H ++ + ++ Sbjct: 93 RDVGMVFQHFNLFSNLSVLENCTLG-PIWVRKMPKKDAEELAMH-YLNKVKIADKSH--R 148 Query: 486 NGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM----QGRTT 541 + S LSGG+ QR AIAR++ I++ DE TSALD +V++ L ++ +G T Sbjct: 149 SSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPE---MVKEVLDIMIELAEEGMTM 205 Query: 542 IVIAHRISTIIE-ADHIIFIEDGKVSESG 569 + + H + + AD ++F++ G++ E Sbjct: 206 VCVTHEMGFARQVADRVVFMDQGQIVEQN 234 >gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 249 Score = 56.2 bits (134), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 110/225 (48%), Gaps = 33/225 (14%) Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLL--MRMYDPSSGSIEIDGINIRDITFSSL 425 ++ G+NL + ++ A++GP+GSGKST+ LL + Y+ ++G I G +I D S+ Sbjct: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILD---WSI 74 Query: 426 RERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIA-----KSANAHDFIM-SLPQGY 479 ER S + +FL +Y + I P + ++IA K+ N + ++ + Sbjct: 75 VERAS---KGIFL---AFQYPVEI--PGIIMMQFLKIALNEQRKARNEKELLIPDFTRKV 126 Query: 480 DTYVGENGSNL-----------SGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528 E G N+ SGG+K+ I + L + + +LDE S LD + Sbjct: 127 RKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIA 186 Query: 529 RQALSRLM-QGRTTIVIAH--RISTIIEADHIIFIEDGKVSESGD 570 Q ++ L Q R+ ++I H R+ I+ D I + +GK+ ++GD Sbjct: 187 AQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231 >gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 610 Score = 55.5 bits (132), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 16/179 (8%) Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427 V+ +L G+ +VGP+G+GK+T++ LL P G I + G N++ T RE Sbjct: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATIDQKRE 357 Query: 428 RISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENG 487 I D L S + G + E +A DF+ Q + Sbjct: 358 DID---PDKSLASYLTGSS---GDSLMVRGESRHVA--GYIKDFLFHPDQAHSLM----- 404 Query: 488 SNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAH 546 +LSGG+K R +AR + + + L++DE T+ LD T + + + +++L QG T ++++H Sbjct: 405 KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL-QG-TILIVSH 461 Score = 47.4 bits (111), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 25/170 (14%) Query: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427 +L + L K + LVG +GSGKST++ + + +P SG++ F Sbjct: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNV-----------FLHSSS 68 Query: 428 RISYVGQ--DVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGE 485 R+ Y+ Q D+ FS +Y T ++ IE S SL + ++ + Sbjct: 69 RLGYLEQNPDLSHFSTISQY------IDDTIKDTIEAPYSP------YSLLKKFNLREQD 116 Query: 486 NGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRL 535 NLS GQ + +A+ + ++ IL+LDE T+ LD T + + Q L ++ Sbjct: 117 RIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI 166 >gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 539 Score = 53.9 bits (128), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 30/197 (15%) Query: 373 NLCFK--SGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERIS 430 NL FK G + ++GP+G+GK+T+ +L P SG+I + G + +S Sbjct: 335 NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVC----------LS 383 Query: 431 YVGQ--DVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDF-IMSLPQGYDTYVGENG 487 YV Q D TV +I G ++++++ N H+ + ++ G+ Sbjct: 384 YVDQSRDSLEAEKTVWEDISGG------DDIVKL----NGHEINSRAYCSAFNFKGGDQQ 433 Query: 488 ---SNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVI 544 +LSGGQ+ R+ +A+ + G++++LDE T+ LDT T + + AL G I+ Sbjct: 434 QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA-GCAVIIS 492 Query: 545 AHRISTIIEADHIIFIE 561 R+ A HI+ E Sbjct: 493 HDRMFLDRLATHILAFE 509 Score = 40.0 bits (92), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 87/195 (44%), Gaps = 46/195 (23%) Query: 358 VFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINI 417 VF S K VL INL F ++GP+G+GKSTI+ ++ + E +G Sbjct: 15 VFGSKK----VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI------DKEYNGEAW 64 Query: 418 RDITFSSLRERISYVGQDVFL-FSNTVRYNILIG-----------------RPMATEEEM 459 F+ + Y+ Q+ L S TV+ NI+ G TEEE+ Sbjct: 65 LATGFT-----VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119 Query: 460 I---EIAKSANAHDF-------IMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGH 509 +I S D I SL D G N ++LSGG+K+R+A+ + +L Sbjct: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPAD---GLNITSLSGGEKRRVALCKLLLSSPD 176 Query: 510 ILVLDEATSALDTHT 524 +L+LDE T+ LD T Sbjct: 177 LLLLDEPTNHLDAET 191 >gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 348 Score = 52.4 bits (124), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 26/238 (10%) Query: 373 NLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDG----INIRDITFSSLRE- 427 NL K G++ L+G SG+GKST++ + + G + +D +N + LR+ Sbjct: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 Query: 428 ---RISYVGQDVFLFS-NTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYV 483 +S V Q L TV N+ +G + +E H I++L + D + Sbjct: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPD-VERKSRVAEHLEIVNLTKWADCKI 167 Query: 484 GENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQ---ALSRLMQGRT 540 + LSGG KQR+ ARA IL++DE S+LD ++ AL R ++ +T Sbjct: 168 ----NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK-KT 222 Query: 541 TIVIAHRISTIIE-ADHIIFIEDGKVSESG-DQKYLLQQKDGSLYKKMYASQLLENLS 596 + ++H I+ + I +E G++ + G Q+ +L + Y S+ ++ L+ Sbjct: 223 IVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPAN------CYVSEFIQKLN 274 >gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 44.7 bits (104), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 93/186 (50%), Gaps = 21/186 (11%) Query: 379 GKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINI------RDITFSSLRERISYV 432 G++ ++G SG+GKS ++ ++ + SG +++ G ++ ++ FS+ ++ + Sbjct: 39 GEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSA---KLGVL 95 Query: 433 GQDVFLFSN-TVRYNI--LIGRPMATEEEMIE-IAKSANAHDFIMSLPQGYDTYVGENGS 488 Q LFS+ TV+ NI I + ++IE I + A I+ LP + Sbjct: 96 FQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIA---IVGLPPETANLMP---F 149 Query: 489 NLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ--GRTTIVIAH 546 LSGG +R+++ARA+ D +L LDE TS LD + L +L G + +I H Sbjct: 150 QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITH 209 Query: 547 RISTII 552 ++ +I Sbjct: 210 DLNNLI 215 >gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 959 Score = 42.7 bits (99), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 8/113 (7%) Query: 453 MATEEEMIEIAKSANAHDFIMSLPQ---GYDTYVGENGSNLSGGQKQRIAIARAMLRD-- 507 M +E + A H+ + +L + GY +G++ + LSGG+ QR+ +A+ + + Sbjct: 807 MTVDESLDFFAAIPTIHNKLTTLKEVGLGY-IKIGQSANTLSGGESQRVKLAKELSKQAT 865 Query: 508 GHIL-VLDEATSALDTHTENLVRQALSRLM-QGRTTIVIAHRISTIIEADHII 558 G+ L +LDE T+ L H + L L+ +G + IVI H + I AD I+ Sbjct: 866 GNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVIKTADWIL 918 Score = 36.2 bits (82), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 3/78 (3%) Query: 486 NGSNLSGGQKQRIAIARAM--LRDGHILVLDEATSALDTHTENLVRQALSRLMQ-GRTTI 542 N + LS G+ QRI +A + G + +LDE + L + L L G T I Sbjct: 500 NSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVI 559 Query: 543 VIAHRISTIIEADHIIFI 560 V+ H T++ ADHI+ I Sbjct: 560 VVEHDEETMLAADHIVDI 577 >gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter asiaticus str. psy62] Length = 246 Score = 28.5 bits (62), Expect = 0.35, Method: Compositional matrix adjust. Identities = 11/20 (55%), Positives = 15/20 (75%) Query: 379 GKMTALVGPSGSGKSTIINL 398 ++ LVGPSGSGKS + N+ Sbjct: 64 SRVVILVGPSGSGKSCLANI 83 >gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 468 Score = 26.6 bits (57), Expect = 1.2, Method: Compositional matrix adjust. Identities = 10/23 (43%), Positives = 14/23 (60%) Query: 544 IAHRISTIIEADHIIFIEDGKVS 566 + HR+ TI H+IFI D K + Sbjct: 312 LTHRLQTIARLGHVIFINDSKAT 334 >gi|255764505|ref|YP_003065248.2| polysialic acid capsule expression protein [Candidatus Liberibacter asiaticus str. psy62] Length = 341 Score = 26.6 bits (57), Expect = 1.3, Method: Compositional matrix adjust. Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 10/57 (17%) Query: 90 SFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHATQSVRSV 146 S ++N + CA SIIAE++ G+ +S+ EL +F A + ++++ Sbjct: 17 SLMKNSTVQCALRSIIAEKR----------GLSSLESSLQGELSFQFHCAVEKIKAI 63 >gi|254780369|ref|YP_003064782.1| Electron transfer flavoprotein alpha subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 318 Score = 26.6 bits (57), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 9/61 (14%) Query: 486 NGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIA 545 N NLS + + A+ + D H+LVL + + EN+ +QA +QG T +++A Sbjct: 15 NQENLSEQTARIVTAAQKISHDIHVLVLGD-------NIENIAQQAAR--IQGVTQVIVA 65 Query: 546 H 546 Sbjct: 66 Q 66 >gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 25.8 bits (55), Expect = 2.1, Method: Compositional matrix adjust. Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 384 LVGPSGSGKSTIINLLMRMYD 404 LVGP+G GK+ + L R+ D Sbjct: 118 LVGPTGCGKTYLAQTLARIID 138 >gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 437 Score = 25.4 bits (54), Expect = 2.6, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 28/129 (21%) Query: 384 LVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTV 443 LVGP+G GK+ I L R+ +E+ F+ I YVG++V + Sbjct: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEV-------TKFTE----IGYVGRNV---EQII 103 Query: 444 RYNILIGRPMATEEEMIEIAKSA--NAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIA 501 R + + + E E+ + A NA + I+ D VG+ ++ + + Sbjct: 104 RDLVDVAINIVRESRRDEVREQASINAEERIL------DALVGKTATSNTR------EVF 151 Query: 502 RAMLRDGHI 510 R LRDG I Sbjct: 152 RKKLRDGEI 160 >gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str. psy62] Length = 483 Score = 25.4 bits (54), Expect = 2.6, Method: Compositional matrix adjust. Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 386 GPSGSGKSTIINLLMRMYD 404 G +GSGK+T++N L R D Sbjct: 257 GGTGSGKTTLLNCLTRYID 275 >gi|254781091|ref|YP_003065504.1| putative pyridoxal-phosphate-dependent aminotransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 383 Score = 25.4 bits (54), Expect = 2.8, Method: Compositional matrix adjust. Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 8/32 (25%) Query: 334 PIMIEE--------SPHAVNLPVGKGTTVFRD 357 P+ IEE S H + PVG G VFR+ Sbjct: 189 PLSIEEIKADFLIISSHKLGAPVGAGALVFRE 220 >gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus Liberibacter asiaticus str. psy62] Length = 853 Score = 25.0 bits (53), Expect = 3.2, Method: Compositional matrix adjust. Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Query: 384 LVGPSGSGKSTIINLLMR-MYDPSSGSIEID 413 +GP+G GK+ ++ L R ++D + I ID Sbjct: 603 FLGPTGVGKTELVKSLARLLFDDENSMIRID 633 >gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus str. psy62] Length = 963 Score = 24.6 bits (52), Expect = 4.4, Method: Compositional matrix adjust. Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%) Query: 479 YDTYVGENGSNLSGGQKQRIAIARAML 505 +DT V NGS ++G ++RIAI R+++ Sbjct: 878 FDT-VKFNGSLMTGSTEKRIAILRSII 903 >gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str. psy62] Length = 311 Score = 24.6 bits (52), Expect = 4.9, Method: Compositional matrix adjust. Identities = 9/15 (60%), Positives = 13/15 (86%) Query: 383 ALVGPSGSGKSTIIN 397 ALVG + +GKST++N Sbjct: 26 ALVGATNAGKSTLVN 40 >gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str. psy62] Length = 920 Score = 24.3 bits (51), Expect = 5.5, Method: Compositional matrix adjust. Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 378 SGKMTALVGPSGSGKSTII 396 SGK+ L GP+ GKST + Sbjct: 649 SGKLWLLTGPNMGGKSTFL 667 >gi|254780976|ref|YP_003065389.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus str. psy62] Length = 160 Score = 24.3 bits (51), Expect = 5.5, Method: Compositional matrix adjust. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 280 FLMSKKGTSNAGEIMSFIT 298 FL+ KK T A E++SFIT Sbjct: 46 FLVRKKVTQTALELLSFIT 64 >gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus str. psy62] Length = 789 Score = 24.3 bits (51), Expect = 6.0, Method: Compositional matrix adjust. Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 8/59 (13%) Query: 349 GKGTTVFRDVFFSYKQGHPVLSGINLCF--------KSGKMTALVGPSGSGKSTIINLL 399 G+ + F D+ Y + V+ C K+ + + G GSGKST++NL+ Sbjct: 463 GEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.324 0.137 0.384 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 353,043 Number of Sequences: 1233 Number of extensions: 14007 Number of successful extensions: 121 Number of sequences better than 100.0: 38 Number of HSP's better than 100.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 65 Number of HSP's gapped (non-prelim): 49 length of query: 596 length of database: 328,796 effective HSP length: 79 effective length of query: 517 effective length of database: 231,389 effective search space: 119628113 effective search space used: 119628113 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 41 (20.4 bits)