HHsearch alignment for GI: 254780918 and conserved domain: PRK11234
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional.
Probab=98.66 E-value=2.4e-06 Score=57.12 Aligned_cols=201 Identities=18% Similarity=0.343 Sum_probs=116.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE-CCCCCCHHHHHHHHH
Q ss_conf 1699995377455699999876420797515799714899816899999998630888279975-788873388989878
Q gi|254780918|r 325 LVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITD-NTHPFNYSRINNNAT 403 (623)
Q Consensus 325 ~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~-~~~~~n~s~~~N~g~ 403 (623)
T Consensus 68 ~lAimvPAW~E~~VI~~M~e~~~~~~~y~~y~iFv-G~YpND~~T~~~v~~~~~~~p~v~~vv~~~~GPTsKadcLN~i~ 146 (646)
T PRK11234 68 PLAIMVPAWNEYGVIANMAELAASTLDYENYHIFV-GTYPNDPDTQREVDRVCRRYPNVHKVVCARPGPTSKADCLNNVI 146 (646)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEE-EECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 35899324432435999999888726777548999-73799878999999998528986999618989985899999999
Q ss_pred HH------CCC-CE--EEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCC
Q ss_conf 61------489-74--7440588278281688998877428981699537664676756778704413254067865664
Q gi|254780918|r 404 LH------AKG-QY--FCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGH 474 (623)
Q Consensus 404 ~~------a~g-ey--ilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~ 474 (623)
T Consensus 147 ~ai~~~E~~~~~~fag~vlHDaE-DvihP~el-~l~n~l~~-~~d~iQlPV-~~l~~---~~~~-~vag~Y--~DEFAE~ 216 (646)
T PRK11234 147 DAIFQFEASAGIEFAGFILHDAE-DVIHPLEL-RLFNYLLP-RKDLIQLPV-YPLER---EWYE-FVAGTY--MDEFAEW 216 (646)
T ss_pred HHHHHHHHCCCCCEEEEEEECHH-HCCCHHHH-HHHHHHCC-CCCEEECCC-CCCCC---HHHH-HHCHHH--HHHHHHH
T ss_conf 99999885049722168884456-34599899-99986457-355653561-12651---1302-201110--5778887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHH-----C-CCCHHHHHHHCCHHHHHHHHHHCCCEEEEC
Q ss_conf 3225655557644222233444441110110204388889871-----7-999768763231688999999749819984
Q gi|254780918|r 475 KNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHV-----G-GFDEKNTPVVFSDIDLCLRILEAGYRNVWT 548 (623)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~i-----G-GfDE~~~~~~~eDvDlclR~~~~G~r~v~~ 548 (623)
T Consensus 217 H~Kd~vVRe~l---------~g~VPSAGVGt~--fsRral~~l~~~~~g~pF~~~SLT---EDYd~g~rl~~~G~r~~Fv 282 (646)
T PRK11234 217 HGKDLVVREAL---------TGQVPSAGVGTC--FSRRAITALLADGDGIPFDVQSLT---EDYDIGFRLKEKGMTEIFV 282 (646)
T ss_pred HCCCCCHHHHH---------CCCCCCCCCHHH--HHHHHHHHHHHHCCCCCCCCCCCC---HHHHHHHHHHHCCCCCEEE
T ss_conf 44544688773---------586888740326--449999999985599977777541---1589899999758860799
Q ss_pred CC
Q ss_conf 75
Q gi|254780918|r 549 PH 550 (623)
Q Consensus 549 P~ 550 (623)
T Consensus 283 ~~ 284 (646)
T PRK11234 283 RF 284 (646)
T ss_pred EC
T ss_conf 74