HHsearch alignment for GI: 254780918 and conserved domain: cd00899

>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=98.91  E-value=2.4e-08  Score=69.36  Aligned_cols=150  Identities=23%  Similarity=0.267  Sum_probs=97.2

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHCC--CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf             16999953774556999998764207--9751579971489981689999999863088827997578887338898987
Q gi|254780918|r  325 LVSIIIPTYNHHHLLKICLESIYHKT--TYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNA  402 (623)
Q Consensus       325 ~VSIIIp~~n~~~~l~~cl~Sl~~~t--~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g  402 (623)
T Consensus         3 k~aIIIPyRdR~~hL~~fl~~l~~~L~~q~~~y~I~vieQ~-------------------------~~~~FNRg~L~NiG   57 (219)
T cd00899           3 KVAIIVPFRNRFEHLLIFLPHLHPFLQRQQLDYRIFVIEQV-------------------------GNFRFNRAKLLNVG   57 (219)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC-------------------------CCCCCCHHHHHHHH
T ss_conf             59999954997999999999999999865887699999964-------------------------88550066667299


Q ss_pred             HHHCC----CCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCC
Q ss_conf             86148----97474405882782816889988774289816995376646767567787044132540678656643225
Q gi|254780918|r  403 TLHAK----GQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKH  478 (623)
Q Consensus       403 ~~~a~----geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~  478 (623)
T Consensus        58 f~ea~~~~~~d~~ifHDVDllP~~~~~--------------------~Y~-----~~~~-p~Hl~~~--~~~-----~--  102 (219)
T cd00899          58 FLEALKDGDWDCFIFHDVDLLPENDRN--------------------LYG-----CEEG-PRHLSVP--LDK-----F--  102 (219)
T ss_pred             HHHHHHCCCCCEEEEECCCCCCCCCCC--------------------CCC-----CCCC-CEEEEEE--ECE-----E--
T ss_conf             999974369888999326634466676--------------------325-----8997-5271323--110-----3--


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECC
Q ss_conf             65555764422223344444111011020438888987179997687632316889999997498199847
Q gi|254780918|r  479 HKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTP  549 (623)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P  549 (623)
T Consensus       103 -~~~l~y~~~--------------fGGV~~~~~~~f~~vNGfsN~yWGWGgEDDdl~~R~~~~~l~i~R~~  158 (219)
T cd00899         103 -HYKLPYKTY--------------FGGVLALTREQFRKVNGFSNAYWGWGGEDDDLYNRIKAAGLKITRPS  158 (219)
T ss_pred             -CCCCCCCCE--------------EEEEEEECHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECC
T ss_conf             -441278762--------------30499977999987289983346888552699999987797598079