HHsearch alignment for GI: 254780918 and conserved domain: cd02517
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=90.58 E-value=1.1 Score=22.53 Aligned_cols=190 Identities=12% Similarity=0.173 Sum_probs=95.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCC-CCCHHHHHHHHHHH--CCCCE
Q ss_conf 7455699999876420797515799714899816899999998630888279975788-87338898987861--48974
Q gi|254780918|r 334 NHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTH-PFNYSRINNNATLH--AKGQY 410 (623)
Q Consensus 334 n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~-~~n~s~~~N~g~~~--a~gey 410 (623)
T Consensus 24 ~G~pmI~~v~~~a~~s~-~~d-~V~VATD---d~eI~~~----~~~~-g~~~imT~~~h~~GTdRi-~ea~~~l~~~~D~ 92 (239)
T cd02517 24 AGKPMIQHVYERAKKAK-GLD-EVVVATD---DERIADA----VESF-GGKVVMTSPDHPSGTDRI-AEVAEKLDADDDI 92 (239)
T ss_pred CCCCHHHHHHHHHHHCC-CCC-EEEEECC---CHHHHHH----HCCC-CCCCCCCCCCCCCCCHHH-HHHHHHCCCCCCE
T ss_conf 99598999999999669-988-4999648---2655533----2147-974010464335621599-9999971998898
Q ss_pred EEEECCCCEEECHHHHHHHHHHHC-CCCEEEEEE--EEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 744058827828168899887742-898169953--76646767567787044132540678656643225655557644
Q gi|254780918|r 411 FCFLNNDTEVINGQWLSEMMGIAS-QPQVGAVGA--RLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSVPN 487 (623)
Q Consensus 411 ilfLn~D~~v~~~~wL~~Ll~~~~-~~~vG~Vg~--~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~~~~~ 487 (623)
T Consensus 93 iinvQGDePli~p~~I~~~i~~~~~~~~~~v~t~~~~i~~~-~~~~~~n~-V---Kvv~~~~~~aly-fSRs~IP~~~~~ 166 (239)
T cd02517 93 VVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDE-EELFNPNV-V---KVVLDKDGYALY-FSRSPIPYPRDS 166 (239)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCH-HHHCCCCC-E---EEEECCCCCCHH-CCCCCCCCCCCC
T ss_conf 99951875678999999999998528875598740236998-89418996-3---999789885110-334788643456
Q ss_pred CCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECC
Q ss_conf 22223344444111011020438888987179997687632316889999997498199847
Q gi|254780918|r 488 YQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTP 549 (623)
Q Consensus 488 ~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P 549 (623)
T Consensus 167 ~~--~~~~~kh-----iGIy~f~~~~L~~f~~~~~s~lE-~~E~lEq-LR~leng~~I~~~~ 219 (239)
T cd02517 167 SE--DFPYYKH-----IGIYAYRRDFLLRFAALPPSPLE-QIESLEQ-LRALENGYKIKVVE 219 (239)
T ss_pred CC--CCCEEEE-----EEEEEECHHHHHHHHCCCCCHHH-HHHHHHH-HHHHHCCCEEEEEE
T ss_conf 55--5041037-----76556339999998737998257-7760899-99998398068999