HHsearch alignment for GI: 254780918 and conserved domain: cd02525
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=100.00 E-value=7.6e-35 Score=231.72 Aligned_cols=200 Identities=22% Similarity=0.335 Sum_probs=148.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCC--CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 78999747589888999999999828899--7489998775780679999999887579889998088885648999999
Q gi|254780918|r 68 LISVIMPVYKIKKEWLEMAIESVRSQIYS--HWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAA 145 (623)
Q Consensus 68 ~iSIiip~yn~~~~~L~~~i~Si~~Qty~--~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l 145 (623)
T Consensus 1 lVSViIp~yN~-~~~l~~~l~Sl~~q~yp~~~~EVIvVDd~S~D-~t~~~~~~~~~~~~~i~~~~~~~-~~~~~a~N~gi 77 (249)
T cd02525 1 FVSIIIPVRNE-EKYIEELLESLLNQSYPKDLIEIIVVDGGSTD-GTREIVQEYAAKDPRIRLIDNPK-RIQSAGLNIGI 77 (249)
T ss_pred CEEEEECCCCC-HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC-CHHHHHHHHHHCCCCEEECCCCC-CCHHHHHHHHH
T ss_conf 98999935697-89999999999846899998899999895961-56999999974077132113555-65899998989
Q ss_pred HHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCE-E-----EECCCC---CCCHHHHCCCCC-
Q ss_conf 965998999976987527320799999987324755420222067589836-5-----422566---789667414785-
Q gi|254780918|r 146 QLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIR-S-----GPYFKY---DFNPELFHVHNM- 215 (623)
Q Consensus 146 ~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~-~-----~p~fkp---~~~~~~l~s~ny- 215 (623)
T Consensus 78 ~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~-~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 155 (249)
T cd02525 78 RNSRGDIIIRVDAHAVYPKDYILELVEALKR-TGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGG-AVKIGYV 155 (249)
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHC-CCCEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCEE
T ss_conf 9668776884147765695699999999877-8971999888506897277777887626432352000132-2458454
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEEEEECCCCC
Q ss_conf -431457689999971887898773027413678864248752200684227995338853
Q gi|254780918|r 216 -ITHLGVYRTETFKKIGGFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVLYHWRMHDNST 275 (623)
Q Consensus 216 -i~~~~~~rr~~~~~iGgf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vLy~~R~~~~s~ 275 (623)
T Consensus 156 ~~~~~~~~rr~~~~~iGgfde~~~~~ED~dl~~R~~~~G--~ki~~~p~a~v~h~-~~~s~ 213 (249)
T cd02525 156 DTVHHGAYRREVFEKVGGFDESLVRNEDAELNYRLRKAG--YKIWLSPDIRVYYY-PRSTL 213 (249)
T ss_pred CCEEEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC--CEEEEECCEEEEEE-CCCCH
T ss_conf 213579888889997389987778238999999999769--97999188799998-99999