HHsearch alignment for GI: 254780918 and conserved domain: cd02526
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.94 E-value=1.4e-25 Score=175.01 Aligned_cols=184 Identities=18% Similarity=0.239 Sum_probs=131.4
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCC-
Q ss_conf 9747589888999999999828899748999877578067999999988757988999808888564899999996599-
Q gi|254780918|r 72 IMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQLATS- 150 (623)
Q Consensus 72 iip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l~~a~G- 150 (623)
T Consensus 2 VIVtYn~~~~~l~~~L~sl~~q~~---eIiVVDN~S~d~-~~~~~~---~~~~~v~~i~~~~N~G~a~g~N~Gi~~a~~~ 74 (237)
T cd02526 2 VVVTYNPDLSKLKELLAALAEQVD---KVVVVDNSSGND-IELRLR---LNSEKIELIHLGENLGIAKALNIGIKAALEN 74 (237)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCC---EEEEEECCCCHH-HHHHHH---HCCCCEEEEECCCCCCHHHHCCCCCHHHHCC
T ss_conf 998738989999999997663799---899996988902-899998---6199869998999778588727430334117
Q ss_pred --CEEEEECCCCCCCCCHHHHHHHHHH---HCCCCCCCCCCCEEECCCCCEEEECCC--------CCCCHHHHCCCCC-C
Q ss_conf --8999976987527320799999987---324755420222067589836542256--------6789667414785-4
Q gi|254780918|r 151 --EWLALLDHDDLLHPTALYYVADAIN---NNPNAEIIYSDEDKINENQIRSGPYFK--------YDFNPELFHVHNM-I 216 (623)
Q Consensus 151 --e~i~~lD~DD~l~p~~L~~~~~~l~---~~p~~~~iYsDe~~i~~~g~~~~p~fk--------p~~~~~~l~s~ny-i 216 (623)
T Consensus 75 ~~d~i~~ln~D~~~~~~~l~~l~~~~~~~~~~~~vg~~~p~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPR--IIDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLI 152 (237)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEE--EECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEE
T ss_conf 97789993575655905999999999852227988999717--9868998004542112533223544247844604303
Q ss_pred CHHHHHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHHCCCCCCEEECCCCEE
Q ss_conf 314576899999718878987-73027413678864248752200684227
Q gi|254780918|r 217 THLGVYRTETFKKIGGFREKF-EGAQDYDLVLRFLENIDLSQIIHIPRVLY 266 (623)
Q Consensus 217 ~~~~~~rr~~~~~iGgf~~~~-~~~~D~Dl~lR~~~~~~~~~i~hip~vLy 266 (623)
T Consensus 153 ~sg~lir~~~~~~vG~fde~fF~y~ED~Dl~~R~~~~G--~~i~~~p~a~v 201 (237)
T cd02526 153 TSGSLISLEALEKVGGFDEDLFIDYVDTEWCLRARSKG--YKIYVVPDAVL 201 (237)
T ss_pred ECCEEEEHHHHHHHCCCCHHHCCCCCHHHHHHHHHHCC--CCEEEECCEEE
T ss_conf 01437789999985799689779371999999999859--97999898899