HHsearch alignment for GI: 254780918 and conserved domain: cd04190

>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.86  E-value=3.6e-21  Score=147.96  Aligned_cols=207  Identities=16%  Similarity=0.205  Sum_probs=134.1

Q ss_pred             EEEECCCC-HHHHHHHHHHHHHCCCCC----------CEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHH
Q ss_conf             99953774-556999998764207975----------1579971489981689999999863088827997578887338
Q gi|254780918|r  328 IIIPTYNH-HHLLKICLESIYHKTTYS----------SFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYS  396 (623)
Q Consensus       328 IIIp~~n~-~~~l~~cl~Sl~~~t~y~----------~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s  396 (623)
T Consensus         1 V~ip~YNE~~~~l~~tl~Si~~~-~yp~~~~~~~~~~~~~v~vi~Dg~~~~n~g-------K~~s---------~~~~~~   63 (244)
T cd04190           1 VCVTMYNEDEEELARTLDSILKN-DYPFCARGGDSWKKIVVCVIFDGAIKKNRG-------KRDS---------QLWFFN   63 (244)
T ss_pred             CEEECCCCCHHHHHHHHHHHHHC-CCCCCCCCCCCCCEEEEEEEECCCCCCCCC-------CHHH---------HHHHHH
T ss_conf             98847889879999999999975-897434577777628999997788767663-------1237---------999999


Q ss_pred             HHHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHH-CCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCC
Q ss_conf             8989878614897474405882782816889988774-289816995376646767567787044132540678656643
Q gi|254780918|r  397 RINNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIA-SQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHK  475 (623)
Q Consensus       397 ~~~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~-~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~  475 (623)
T Consensus        64 -al~~~~~~~~~e~v~~vDaDt~-~~~~al~~lv~~f~~dp~vgaV~G~i~v~n~~~~-~l~~~q~~----------EY~  130 (244)
T cd04190          64 -YFCRVLFPDDPEFILLVDADTK-FDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQG-PLVMYQVF----------EYA  130 (244)
T ss_pred             -HHHHHHHHCCCEEEEEEECCCC-CCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCC-HHHHHHHH----------HHH
T ss_conf             -9998875059809999907998-1857999999999639983788766896578888-89999999----------999


Q ss_pred             CCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHH-----------------HCCHHHHHHH
Q ss_conf             22565555764422223-34444411101102043888898717999768763-----------------2316889999
Q gi|254780918|r  476 NKHHKARCSVPNYQAFA-MHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPV-----------------VFSDIDLCLR  537 (623)
Q Consensus       476 ~~~~~~~~~~~~~~~~~-~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~-----------------~~eDvDlclR  537 (623)
T Consensus       131 ~~-~--------~~~r~~~s~~G~v~~~pGa~s~yR~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~laEDr~Lt~~  201 (244)
T cd04190         131 IS-H--------WLDKAFESVFGFVTCLPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTL  201 (244)
T ss_pred             HH-H--------HHHHHHHHHCCCEEECCCCHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHHHHHHCCCCHHCHHHHHHH
T ss_conf             99-9--------98899998679989717812552099887347874441100223331013332111102110999999


Q ss_pred             HHHCCCE--EEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9974981--9984754999517733677668999999999999999988388
Q gi|254780918|r  538 ILEAGYR--NVWTPHADLYHDESRTRKYDHEDPAKMIVFQEACQYLQKRWKK  587 (623)
Q Consensus       538 ~~~~G~r--~v~~P~a~v~H~es~srg~~~~~~~k~~~~~~~~~~~~~rW~~  587 (623)
T Consensus       202 l~~~g~~~~~~y~p~A~~~T~----------~P~t~~~l~k----QR~RW~~  239 (244)
T cd04190         202 LLKAGPKRKYLYVPGAVAETD----------VPETFVELLS----QRRRWIN  239 (244)
T ss_pred             HHHHCCCCEEEECCCCEEEEE----------CCCCHHHHHH----HHHHHHH
T ss_conf             998288734887457389998----------9828999999----9888750