HHsearch alignment for GI: 254780918 and conserved domain: cd04190
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.86 E-value=3.6e-21 Score=147.96 Aligned_cols=207 Identities=16% Similarity=0.205 Sum_probs=134.1
Q ss_pred EEEECCCC-HHHHHHHHHHHHHCCCCC----------CEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHH
Q ss_conf 99953774-556999998764207975----------1579971489981689999999863088827997578887338
Q gi|254780918|r 328 IIIPTYNH-HHLLKICLESIYHKTTYS----------SFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYS 396 (623)
Q Consensus 328 IIIp~~n~-~~~l~~cl~Sl~~~t~y~----------~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s 396 (623)
T Consensus 1 V~ip~YNE~~~~l~~tl~Si~~~-~yp~~~~~~~~~~~~~v~vi~Dg~~~~n~g-------K~~s---------~~~~~~ 63 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKN-DYPFCARGGDSWKKIVVCVIFDGAIKKNRG-------KRDS---------QLWFFN 63 (244)
T ss_pred CEEECCCCCHHHHHHHHHHHHHC-CCCCCCCCCCCCCEEEEEEEECCCCCCCCC-------CHHH---------HHHHHH
T ss_conf 98847889879999999999975-897434577777628999997788767663-------1237---------999999
Q ss_pred HHHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHH-CCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCC
Q ss_conf 8989878614897474405882782816889988774-289816995376646767567787044132540678656643
Q gi|254780918|r 397 RINNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIA-SQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHK 475 (623)
Q Consensus 397 ~~~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~-~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~ 475 (623)
T Consensus 64 -al~~~~~~~~~e~v~~vDaDt~-~~~~al~~lv~~f~~dp~vgaV~G~i~v~n~~~~-~l~~~q~~----------EY~ 130 (244)
T cd04190 64 -YFCRVLFPDDPEFILLVDADTK-FDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQG-PLVMYQVF----------EYA 130 (244)
T ss_pred -HHHHHHHHCCCEEEEEEECCCC-CCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCC-HHHHHHHH----------HHH
T ss_conf -9998875059809999907998-1857999999999639983788766896578888-89999999----------999
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHH-----------------HCCHHHHHHH
Q ss_conf 22565555764422223-34444411101102043888898717999768763-----------------2316889999
Q gi|254780918|r 476 NKHHKARCSVPNYQAFA-MHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPV-----------------VFSDIDLCLR 537 (623)
Q Consensus 476 ~~~~~~~~~~~~~~~~~-~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~-----------------~~eDvDlclR 537 (623)
T Consensus 131 ~~-~--------~~~r~~~s~~G~v~~~pGa~s~yR~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~laEDr~Lt~~ 201 (244)
T cd04190 131 IS-H--------WLDKAFESVFGFVTCLPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTL 201 (244)
T ss_pred HH-H--------HHHHHHHHHCCCEEECCCCHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHHHHHHCCCCHHCHHHHHHH
T ss_conf 99-9--------98899998679989717812552099887347874441100223331013332111102110999999
Q ss_pred HHHCCCE--EEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9974981--9984754999517733677668999999999999999988388
Q gi|254780918|r 538 ILEAGYR--NVWTPHADLYHDESRTRKYDHEDPAKMIVFQEACQYLQKRWKK 587 (623)
Q Consensus 538 ~~~~G~r--~v~~P~a~v~H~es~srg~~~~~~~k~~~~~~~~~~~~~rW~~ 587 (623)
T Consensus 202 l~~~g~~~~~~y~p~A~~~T~----------~P~t~~~l~k----QR~RW~~ 239 (244)
T cd04190 202 LLKAGPKRKYLYVPGAVAETD----------VPETFVELLS----QRRRWIN 239 (244)
T ss_pred HHHHCCCCEEEECCCCEEEEE----------CCCCHHHHHH----HHHHHHH
T ss_conf 998288734887457389998----------9828999999----9888750