HHsearch alignment for GI: 254780918 and conserved domain: cd06436
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.87 E-value=7.1e-22 Score=152.28 Aligned_cols=170 Identities=15% Similarity=0.138 Sum_probs=112.5
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEC--CCCCCHHHHHHHHHHH
Q ss_conf 99953774556999998764207975157997148998168999999986308882799757--8887338898987861
Q gi|254780918|r 328 IIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDN--THPFNYSRINNNATLH 405 (623)
Q Consensus 328 IIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~--~~~~n~s~~~N~g~~~ 405 (623)
T Consensus 1 VlIPa~NEe~~I~~ti~sl~~~--~~~~eIivvdDgS~D-~T~~~~~~~~-~~~~~~vi~~~~~~~~~GK~~ALN~al~~ 76 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLRN--KPNFLVLVIDDASDD-DTAGIVRLAI-TDSRVHLLRRHLPNARTGKGDALNAAYDQ 76 (191)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CCCCEEEEEECCCCC-CHHHHHHHHH-HCCCEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 9873078789999999999738--999689999799992-0999999983-08987999954776678515788889998
Q ss_pred -----------CCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCC
Q ss_conf -----------489747440588278281688998877428981699537664676756778704413254067865664
Q gi|254780918|r 406 -----------AKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGH 474 (623)
Q Consensus 406 -----------a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~ 474 (623)
T Consensus 77 ~~~~~~~~~~~~~~eii~v~DAD~~~-~~d~L~~~~~~f~dp~v~~Vqg~~~~~N~~~n~l-tr~q~~E----------~ 144 (191)
T cd06436 77 IRQILIEEGADPERVIIAVIDADGRL-DPNALEAVAPYFSDPRVAGTQSRVRMYNRHKNLL-TILQDLE----------F 144 (191)
T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCC-CHHHHHHHHHHHCCCCEEEEECCCEECCCCCCHH-HHHHHHH----------H
T ss_conf 66432000135664189995378732-8899999999725988159943403268887899-9999999----------9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCH
Q ss_conf 322565555764422223344444111011020438888987179997
Q gi|254780918|r 475 KNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDE 522 (623)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE 522 (623)
T Consensus 145 ~-~~~~~~--~~~----r~~~--g~~~~~G~~~~~Rr~al~~vGG~~~ 183 (191)
T cd06436 145 F-IIIAAT--QSL----RALT--GTVGLGGNGQFMRLSALDGLIGEEP 183 (191)
T ss_pred H-HHHHHH--HHH----HHHC--CEEEECCEEEEEHHHHHHHCCCCCC
T ss_conf 9-999999--989----9867--9289673388886999997679987