HHsearch alignment for GI: 254780918 and conserved domain: cd06913
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=100.00 E-value=1.2e-31 Score=212.07 Aligned_cols=201 Identities=23% Similarity=0.316 Sum_probs=141.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCCC-EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE--EE---CCCCCCHHHHHHH
Q ss_conf 999537745569999987642079751-57997148998168999999986308882799--75---7888733889898
Q gi|254780918|r 328 IIIPTYNHHHLLKICLESIYHKTTYSS-FEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVI--TD---NTHPFNYSRINNN 401 (623)
Q Consensus 328 IIIp~~n~~~~l~~cl~Sl~~~t~y~~-~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i--~~---~~~~~n~s~~~N~ 401 (623)
T Consensus 1 VIiP~YN~~~~l~~~l~Svl~Qt-y~~~~EiIiVDDgStD-~t~~ii~~~~~~~~~~~~~~~~~~~~~~~~~G~~~arN~ 78 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQQD-FEGTLELSVFNDASTD-KSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQ 78 (219)
T ss_pred CEECCCCCHHHHHHHHHHHHHCC-CCCCEEEEEEECCCCC-CHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHH
T ss_conf 98867898899999999998488-9998999999899981-569999999986667776999823677664678999999
Q ss_pred HHHHCCCCEEEEECCCCEEECHHHHHHHHHHHC-CCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCC
Q ss_conf 786148974744058827828168899887742-8981699537664676756778704413254067865664322565
Q gi|254780918|r 402 ATLHAKGQYFCFLNNDTEVINGQWLSEMMGIAS-QPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHK 480 (623)
Q Consensus 402 g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~-~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~ 480 (623)
T Consensus 79 gi~~A~GeyI~flDsDD-~~~p~~l~~~~~~~~~~~~-~~v~~~~~~~-----~~~~~~~~~~-------~~~~~~---- 140 (219)
T cd06913 79 AIAQSSGRYLCFLDSDD-VMMPQRIRLQYEAALQHPN-SIIGCQVRRI-----PEDSTERYTR-------WINTLT---- 140 (219)
T ss_pred HHHHCCCCEEEEECCCC-CCCHHHHHHHHHHHHHCCC-CEEEEEEEEE-----CCCCCEECCC-------CCCCCC----
T ss_conf 99977888788618976-4276599999999985999-6999878996-----6998523132-------235689----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEE
Q ss_conf 555764422223344444111011020438888987179997687632316889999997498199847549995
Q gi|254780918|r 481 ARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYH 555 (623)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H 555 (623)
T Consensus 141 -----~~~~~~~-~~~~~~~~~~~~~~~~rr~~~~~~g~f~e~~~-~~~ED~~~~~r~l~~~~~i~~i~~~L~~Y 208 (219)
T cd06913 141 -----REQLLTQ-VYTSHGPTVIMPTWFCSREWFSHVGPFDEGGK-GVPEDLLFFYEHLRKGGGVYRVDRCLLLY 208 (219)
T ss_pred -----HHHHHHH-HHHHCCCCEEEHHHHHHHHHHHHHCCCCCCCC-CCCHHHHHHHHHHHCCCCEEEECCCEEEE
T ss_conf -----8999998-87616983440035532999999289996578-67028999999997499699969977999