Query gi|254780918|ref|YP_003065331.1| glycosyl transferase family protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 623
No_of_seqs 407 out of 5882
Neff 7.8
Searched_HMMs 39220
Date Mon May 30 02:04:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780918.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04184 GT2_RfbC_Mx_like Myxoc 100.0 0 0 370.8 19.4 202 67-270 1-202 (202)
2 cd04195 GT2_AmsE_like GT2_AmsE 100.0 1.4E-45 0 298.1 19.0 196 70-269 1-201 (201)
3 cd06913 beta3GnTL1_like Beta 1 100.0 4.2E-45 0 294.6 20.2 204 71-279 1-219 (219)
4 cd04196 GT_2_like_d Subfamily 100.0 7E-45 0 293.1 17.8 204 70-278 1-212 (214)
5 PRK10018 predicted glycosyl tr 100.0 4.1E-44 0 288.5 20.2 212 64-282 2-219 (279)
6 cd06433 GT_2_WfgS_like WfgS an 100.0 9.9E-44 0 286.1 16.8 201 70-277 1-202 (202)
7 cd02525 Succinoglycan_BP_ExoA 100.0 2E-42 0 278.1 20.5 235 325-588 1-237 (249)
8 PRK10073 predicted glycosyl tr 100.0 3.1E-42 0 277.0 21.3 211 64-281 3-228 (329)
9 cd02526 GT2_RfbF_like RfbF is 100.0 2.4E-41 0 271.5 21.2 220 329-581 2-236 (237)
10 COG1216 Predicted glycosyltran 100.0 5.9E-40 1.5E-44 263.0 23.3 223 323-564 2-228 (305)
11 cd04186 GT_2_like_c Subfamily 100.0 7.2E-40 1.8E-44 262.5 19.2 165 328-557 1-166 (166)
12 cd04185 GT_2_like_b Subfamily 100.0 3.5E-39 9E-44 258.3 20.5 177 329-564 2-181 (202)
13 cd02522 GT_2_like_a GT_2_like_ 100.0 3E-38 7.7E-43 252.6 17.6 198 326-573 1-199 (221)
14 cd06421 CESA_CelA_like CESA_Ce 100.0 2E-38 5E-43 253.7 16.6 209 324-558 1-213 (234)
15 cd04184 GT2_RfbC_Mx_like Myxoc 100.0 5.4E-38 1.4E-42 251.0 16.8 199 324-557 1-201 (202)
16 cd06435 CESA_NdvC_like NdvC_li 100.0 1.4E-37 3.7E-42 248.4 17.2 209 327-560 1-213 (236)
17 cd06439 CESA_like_1 CESA_like_ 100.0 1.6E-37 4.2E-42 248.1 16.8 208 319-560 24-233 (251)
18 PRK11204 N-glycosyltransferase 100.0 1.6E-37 4.1E-42 248.1 16.2 209 321-556 51-260 (421)
19 cd06420 GT2_Chondriotin_Pol_N 100.0 1.2E-36 3.2E-41 242.7 18.5 179 328-556 1-181 (182)
20 cd02520 Glucosylceramide_synth 100.0 5.3E-36 1.4E-40 238.8 20.7 177 324-560 1-181 (196)
21 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 1.4E-36 3.5E-41 242.4 16.9 217 320-556 45-267 (439)
22 PRK10063 predicted glycosyl tr 100.0 2.4E-36 6E-41 241.0 17.6 203 68-281 2-208 (248)
23 cd06437 CESA_CaSu_A2 Cellulose 100.0 2.9E-35 7.5E-40 234.3 18.6 208 324-558 1-215 (232)
24 cd02525 Succinoglycan_BP_ExoA 100.0 7.6E-35 1.9E-39 231.7 15.2 200 68-275 1-213 (249)
25 cd02522 GT_2_like_a GT_2_like_ 100.0 7.9E-35 2E-39 231.6 15.2 188 69-272 1-190 (221)
26 PRK11204 N-glycosyltransferase 100.0 2.3E-34 5.8E-39 228.8 16.6 196 63-267 50-258 (421)
27 cd06421 CESA_CelA_like CESA_Ce 100.0 8.8E-34 2.2E-38 225.2 16.8 196 67-267 1-209 (234)
28 cd04192 GT_2_like_e Subfamily 100.0 5.8E-34 1.5E-38 226.3 15.7 208 328-559 1-214 (229)
29 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 5.6E-34 1.4E-38 226.4 15.1 200 62-267 44-265 (439)
30 cd04195 GT2_AmsE_like GT2_AmsE 100.0 2.2E-33 5.5E-38 222.8 14.5 197 327-555 1-200 (201)
31 cd04186 GT_2_like_c Subfamily 100.0 2.4E-33 6.2E-38 222.5 14.2 163 71-268 1-165 (166)
32 cd06433 GT_2_WfgS_like WfgS an 100.0 7.3E-33 1.9E-37 219.6 15.6 193 327-556 1-194 (202)
33 cd06420 GT2_Chondriotin_Pol_N 100.0 7.6E-33 1.9E-37 219.5 15.0 174 71-268 1-179 (182)
34 cd02510 pp-GalNAc-T pp-GalNAc- 100.0 1.1E-32 2.8E-37 218.5 15.0 251 327-590 1-258 (299)
35 cd04196 GT_2_like_d Subfamily 100.0 7.9E-32 2E-36 213.2 18.7 206 327-560 1-210 (214)
36 cd06423 CESA_like CESA_like is 100.0 1.3E-32 3.2E-37 218.1 12.6 176 328-525 1-177 (180)
37 cd06913 beta3GnTL1_like Beta 1 100.0 1.2E-31 3.1E-36 212.1 16.5 201 328-555 1-208 (219)
38 cd06427 CESA_like_2 CESA_like_ 100.0 2.7E-31 6.8E-36 210.0 15.8 205 324-555 1-210 (241)
39 cd06439 CESA_like_1 CESA_like_ 100.0 4.4E-31 1.1E-35 208.7 15.4 196 64-274 26-233 (251)
40 cd06434 GT2_HAS Hyaluronan syn 100.0 8.2E-31 2.1E-35 207.0 15.0 207 326-559 2-216 (235)
41 cd02520 Glucosylceramide_synth 100.0 1.6E-30 4.1E-35 205.3 16.1 169 67-267 1-175 (196)
42 TIGR03469 HonB hopene-associat 100.0 1.4E-30 3.4E-35 205.7 15.0 215 318-554 34-260 (384)
43 TIGR03472 HpnI hopanoid biosyn 100.0 4.8E-30 1.2E-34 202.3 16.7 213 319-555 36-252 (373)
44 cd06435 CESA_NdvC_like NdvC_li 100.0 2.1E-30 5.5E-35 204.5 14.8 191 70-266 1-206 (236)
45 cd06437 CESA_CaSu_A2 Cellulose 100.0 4.1E-30 1E-34 202.7 14.9 194 67-267 1-211 (232)
46 PRK10073 predicted glycosyl tr 100.0 7.4E-28 1.9E-32 188.9 20.3 217 321-565 3-228 (329)
47 cd06427 CESA_like_2 CESA_like_ 100.0 9.3E-29 2.4E-33 194.5 15.6 195 67-266 1-209 (241)
48 cd06423 CESA_like CESA_like is 100.0 2.6E-29 6.7E-34 197.8 10.8 169 71-242 1-180 (180)
49 cd04185 GT_2_like_b Subfamily 100.0 3.9E-28 9.8E-33 190.7 15.4 166 72-267 2-171 (202)
50 PRK10018 predicted glycosyl tr 100.0 1E-26 2.6E-31 182.0 22.7 217 321-572 2-222 (279)
51 cd04192 GT_2_like_e Subfamily 100.0 1E-27 2.6E-32 188.1 15.8 189 71-266 1-208 (229)
52 cd02510 pp-GalNAc-T pp-GalNAc- 100.0 6E-28 1.5E-32 189.5 10.0 190 70-262 1-218 (299)
53 COG1215 Glycosyltransferases, 100.0 9.7E-27 2.5E-31 182.1 16.1 113 324-439 54-168 (439)
54 TIGR03469 HonB hopene-associat 99.9 9.8E-26 2.5E-30 175.9 15.5 203 64-272 37-266 (384)
55 cd02526 GT2_RfbF_like RfbF is 99.9 1.4E-25 3.5E-30 175.0 14.0 184 72-266 2-201 (237)
56 TIGR03030 CelA cellulose synth 99.9 1.3E-24 3.3E-29 169.1 15.8 199 64-266 128-355 (713)
57 COG1215 Glycosyltransferases, 99.9 2.4E-24 6.1E-29 167.4 16.7 196 66-267 53-263 (439)
58 PRK10063 predicted glycosyl tr 99.9 1.1E-23 2.8E-28 163.4 19.5 195 325-560 2-201 (248)
59 pfam00535 Glycos_transf_2 Glyc 99.9 3.8E-25 9.6E-30 172.3 8.5 112 70-184 1-112 (168)
60 COG1216 Predicted glycosyltran 99.9 2.4E-23 6.2E-28 161.3 17.5 194 66-266 2-217 (305)
61 cd06434 GT2_HAS Hyaluronan syn 99.9 9.8E-24 2.5E-28 163.7 13.9 195 69-273 2-216 (235)
62 TIGR03472 HpnI hopanoid biosyn 99.9 1.4E-23 3.5E-28 162.8 12.9 197 64-265 38-249 (373)
63 TIGR03030 CelA cellulose synth 99.9 1.1E-22 2.8E-27 157.3 16.9 243 321-603 128-396 (713)
64 pfam00535 Glycos_transf_2 Glyc 99.9 5.6E-23 1.4E-27 159.0 10.3 167 327-518 1-168 (168)
65 KOG3736 consensus 99.9 7.5E-23 1.9E-27 158.3 10.0 270 320-601 138-413 (578)
66 cd06436 GlcNAc-1-P_transferase 99.9 7.1E-22 1.8E-26 152.3 10.6 170 328-522 1-183 (191)
67 cd06436 GlcNAc-1-P_transferase 99.9 1.1E-21 2.8E-26 151.2 11.1 160 71-235 1-183 (191)
68 cd04188 DPG_synthase DPG_synth 99.9 6.9E-21 1.8E-25 146.2 14.2 112 71-185 1-117 (211)
69 cd04190 Chitin_synth_C C-termi 99.9 3.6E-21 9.2E-26 148.0 12.4 207 328-587 1-239 (244)
70 cd06438 EpsO_like EpsO protein 99.8 1.3E-20 3.4E-25 144.5 11.5 103 71-178 1-110 (183)
71 TIGR01556 rhamnosyltran rhamno 99.8 1.7E-19 4.4E-24 137.7 16.4 225 332-584 2-248 (291)
72 cd04179 DPM_DPG-synthase_like 99.8 2.7E-20 6.9E-25 142.6 11.4 173 71-248 1-184 (185)
73 COG0463 WcaA Glycosyltransfera 99.8 5.2E-20 1.3E-24 140.8 12.6 106 66-174 2-107 (291)
74 cd06442 DPM1_like DPM1_like re 99.8 7.4E-20 1.9E-24 139.9 12.5 111 71-184 1-112 (224)
75 PRK11498 bcsA cellulose syntha 99.8 2.1E-18 5.3E-23 131.1 16.7 197 324-551 273-477 (858)
76 cd06438 EpsO_like EpsO protein 99.8 4.9E-20 1.2E-24 141.0 7.8 176 328-534 1-183 (183)
77 PRK11498 bcsA cellulose syntha 99.8 1.1E-18 2.9E-23 132.7 14.3 193 64-266 270-479 (858)
78 cd00761 Glyco_tranf_GTA_type G 99.8 8.6E-19 2.2E-23 133.4 13.2 147 71-250 1-148 (156)
79 cd04190 Chitin_synth_C C-termi 99.8 5.3E-19 1.3E-23 134.7 11.8 177 71-267 1-220 (244)
80 KOG3738 consensus 99.8 7.5E-20 1.9E-24 139.9 7.4 193 65-261 122-347 (559)
81 cd04188 DPG_synthase DPG_synth 99.8 4.2E-18 1.1E-22 129.2 15.5 203 328-557 1-208 (211)
82 PTZ00260 glycosyl transferase 99.8 3E-18 7.5E-23 130.1 14.6 76 98-174 117-194 (336)
83 KOG3737 consensus 99.8 2E-19 5.1E-24 137.3 8.4 269 316-595 147-428 (603)
84 cd06442 DPM1_like DPM1_like re 99.8 1E-17 2.7E-22 126.8 15.1 205 328-560 1-207 (224)
85 KOG3736 consensus 99.8 1.3E-19 3.4E-24 138.3 5.3 196 65-261 140-369 (578)
86 PRK10714 undecaprenyl phosphat 99.8 6.1E-18 1.6E-22 128.2 13.7 159 67-235 6-177 (324)
87 cd00761 Glyco_tranf_GTA_type G 99.8 4.6E-17 1.2E-21 122.8 15.5 153 328-545 1-154 (156)
88 cd04187 DPM1_like_bac Bacteria 99.7 1.7E-17 4.4E-22 125.4 10.0 157 71-237 1-169 (181)
89 cd02511 Beta4Glucosyltransfera 99.7 4.3E-17 1.1E-21 123.0 11.9 102 68-181 1-102 (229)
90 KOG3738 consensus 99.7 9.6E-18 2.5E-22 127.0 8.4 259 314-590 116-380 (559)
91 cd04191 Glucan_BSP_ModH Glucan 99.7 1.9E-16 4.9E-21 119.0 13.5 201 327-553 2-228 (254)
92 cd04191 Glucan_BSP_ModH Glucan 99.7 6.1E-16 1.6E-20 115.9 15.8 192 70-265 2-227 (254)
93 cd02511 Beta4Glucosyltransfera 99.7 6.1E-16 1.5E-20 116.0 13.0 101 325-438 1-101 (229)
94 KOG3737 consensus 99.7 2.4E-16 6.2E-21 118.4 9.0 203 57-262 142-380 (603)
95 PTZ00260 glycosyl transferase 99.6 1.4E-14 3.6E-19 107.6 14.2 209 324-558 79-300 (336)
96 PRK10714 undecaprenyl phosphat 99.6 1.4E-14 3.6E-19 107.6 13.8 212 321-573 3-217 (324)
97 COG0463 WcaA Glycosyltransfera 99.6 9.4E-15 2.4E-19 108.7 12.0 105 323-432 2-106 (291)
98 cd04179 DPM_DPG-synthase_like 99.6 2.9E-14 7.4E-19 105.7 12.1 116 328-446 1-118 (185)
99 KOG2978 consensus 99.6 1.6E-13 4.2E-18 101.1 14.8 210 324-560 3-217 (238)
100 PRK13915 putative glucosyl-3-p 99.6 6.4E-13 1.6E-17 97.4 17.7 246 38-306 5-272 (307)
101 KOG2978 consensus 99.6 1.9E-13 4.9E-18 100.6 13.8 192 66-278 2-221 (238)
102 cd04187 DPM1_like_bac Bacteria 99.5 1.1E-13 2.7E-18 102.2 9.5 164 328-523 1-168 (181)
103 TIGR01556 rhamnosyltran rhamno 99.5 1.7E-12 4.4E-17 94.8 15.3 185 75-267 2-210 (291)
104 KOG2977 consensus 99.3 1.8E-11 4.7E-16 88.5 11.2 107 68-175 68-183 (323)
105 KOG2547 consensus 99.3 5.2E-11 1.3E-15 85.8 13.2 204 322-550 83-291 (431)
106 KOG3588 consensus 99.2 2E-09 5.2E-14 76.0 16.0 223 321-572 226-453 (494)
107 PRK13915 putative glucosyl-3-p 99.2 3.3E-10 8.4E-15 80.8 10.6 113 323-443 30-151 (307)
108 pfam02709 Galactosyl_T_2 Galac 99.0 4.8E-09 1.2E-13 73.7 11.7 164 307-547 34-203 (271)
109 PRK05454 glucosyltransferase M 99.0 1.8E-08 4.6E-13 70.2 12.3 166 68-234 124-314 (663)
110 cd02514 GT13_GLCNAC-TI GT13_GL 99.0 7.3E-08 1.9E-12 66.4 15.1 179 69-265 2-204 (334)
111 KOG2547 consensus 98.9 3.9E-08 9.9E-13 68.1 12.8 178 64-245 82-275 (431)
112 cd00899 b4GalT Beta-4-Galactos 98.9 2.4E-08 6.2E-13 69.4 11.0 150 325-549 3-158 (219)
113 KOG3916 consensus 98.9 2.2E-08 5.6E-13 69.6 9.7 184 308-573 137-332 (372)
114 KOG2977 consensus 98.8 3.5E-08 8.9E-13 68.4 9.1 92 325-418 68-168 (323)
115 pfam03071 GNT-I GNT-I family. 98.8 6.9E-07 1.8E-11 60.5 15.5 185 64-265 90-299 (434)
116 PRK11234 nfrB bacteriophage N4 98.8 9.1E-07 2.3E-11 59.8 14.8 189 68-262 68-285 (646)
117 PRK11234 nfrB bacteriophage N4 98.7 2.4E-06 6.2E-11 57.1 14.5 201 325-550 68-284 (646)
118 COG4092 Predicted glycosyltran 98.7 1.7E-07 4.4E-12 64.2 8.5 182 67-253 2-217 (346)
119 COG2943 MdoH Membrane glycosyl 98.6 5.5E-07 1.4E-11 61.1 10.3 166 68-234 145-335 (736)
120 cd02514 GT13_GLCNAC-TI GT13_GL 98.4 1.2E-05 3.1E-10 52.9 12.5 185 326-557 2-210 (334)
121 COG4092 Predicted glycosyltran 98.4 3E-06 7.5E-11 56.6 9.1 200 324-540 2-215 (346)
122 pfam03142 Chitin_synth_2 Chiti 98.3 2.7E-05 6.9E-10 50.7 12.9 39 68-106 25-66 (536)
123 pfam03071 GNT-I GNT-I family. 98.3 8.5E-05 2.2E-09 47.7 14.2 191 321-557 90-305 (434)
124 KOG3588 consensus 98.2 8.4E-05 2.2E-09 47.7 12.9 206 64-280 226-448 (494)
125 pfam03142 Chitin_synth_2 Chiti 98.1 4.2E-05 1.1E-09 49.6 10.5 37 406-443 199-236 (536)
126 pfam11316 DUF3118 Protein of u 97.9 0.00039 9.8E-09 43.7 11.8 122 84-207 45-181 (235)
127 pfam11397 GlcNAc Glycosyltrans 97.9 0.0016 4.1E-08 39.9 14.9 216 326-559 2-246 (324)
128 pfam05679 CHGN Chondroitin N-a 97.8 0.0029 7.5E-08 38.2 22.0 209 321-556 244-466 (498)
129 KOG2571 consensus 97.7 4E-05 1E-09 49.7 3.3 153 400-588 431-596 (862)
130 PRK05454 glucosyltransferase M 97.6 0.0038 9.6E-08 37.6 13.1 204 323-552 122-351 (663)
131 cd00899 b4GalT Beta-4-Galactos 97.3 0.0069 1.8E-07 36.0 11.4 154 68-270 3-166 (219)
132 pfam02709 Galactosyl_T_2 Galac 97.3 0.0034 8.5E-08 37.9 9.3 156 68-272 50-215 (271)
133 KOG3917 consensus 97.2 0.00095 2.4E-08 41.3 5.7 146 325-545 75-224 (310)
134 TIGR02460 osmo_MPGsynth mannos 96.5 0.036 9.3E-07 31.5 9.5 100 68-174 57-189 (394)
135 COG2943 MdoH Membrane glycosyl 96.5 0.055 1.4E-06 30.4 10.5 203 325-552 145-372 (736)
136 cd00218 GlcAT-I Beta1,3-glucur 96.4 0.026 6.5E-07 32.5 8.2 115 324-445 1-134 (223)
137 pfam11316 DUF3118 Protein of u 96.4 0.044 1.1E-06 31.0 9.3 92 340-435 45-141 (235)
138 cd02538 G1P_TT_short G1P_TT_sh 96.3 0.04 1E-06 31.3 8.6 208 321-572 21-231 (240)
139 pfam03452 Anp1 Anp1. The membe 96.3 0.077 2E-06 29.5 10.7 31 323-354 25-55 (270)
140 pfam09488 Osmo_MPGsynth Mannos 96.0 0.11 2.7E-06 28.7 9.7 101 68-174 51-183 (381)
141 PRK09451 glmU bifunctional N-a 95.9 0.11 2.8E-06 28.6 11.3 153 64-229 21-182 (456)
142 PRK09451 glmU bifunctional N-a 95.9 0.12 3E-06 28.5 14.4 190 322-546 22-213 (456)
143 pfam05679 CHGN Chondroitin N-a 95.6 0.14 3.7E-06 27.9 19.8 13 537-549 457-469 (498)
144 KOG2571 consensus 95.6 0.15 3.7E-06 27.8 9.2 184 64-253 290-564 (862)
145 pfam03452 Anp1 Anp1. The membe 95.4 0.17 4.3E-06 27.5 9.5 112 61-177 20-168 (270)
146 TIGR01208 rmlA_long glucose-1- 95.3 0.2 5E-06 27.1 9.3 207 71-299 23-245 (361)
147 KOG1413 consensus 95.2 0.2 5.2E-06 27.0 11.1 178 64-255 64-266 (411)
148 cd04181 NTP_transferase NTP_tr 95.2 0.21 5.2E-06 26.9 8.7 186 321-547 19-206 (217)
149 pfam09258 Glyco_transf_64 Glyc 95.1 0.22 5.6E-06 26.8 8.3 103 327-441 2-111 (244)
150 cd06915 NTP_transferase_WcbM_l 94.9 0.25 6.3E-06 26.5 11.1 184 321-547 19-204 (223)
151 pfam07507 WavE WavE lipopolysa 94.8 0.067 1.7E-06 29.9 5.2 104 69-174 1-118 (310)
152 KOG1476 consensus 94.7 0.27 6.9E-06 26.2 8.7 116 323-446 86-221 (330)
153 pfam00483 NTP_transferase Nucl 94.7 0.28 7.1E-06 26.1 11.6 193 322-547 21-219 (247)
154 COG1209 RfbA dTDP-glucose pyro 94.6 0.29 7.4E-06 26.0 13.7 171 72-252 25-206 (286)
155 pfam07507 WavE WavE lipopolysa 94.4 0.079 2E-06 29.5 4.7 103 326-431 1-116 (310)
156 pfam01697 DUF23 Domain of unkn 94.4 0.33 8.5E-06 25.7 10.7 109 69-181 3-132 (262)
157 pfam11735 CAP59_mtransfer Cryp 94.2 0.36 9.1E-06 25.5 12.1 108 334-444 11-148 (244)
158 KOG3916 consensus 94.0 0.4 1E-05 25.2 9.6 58 215-274 260-319 (372)
159 PRK00317 mobA molybdopterin-gu 93.7 0.45 1.1E-05 24.9 9.1 92 334-440 28-121 (193)
160 cd04189 G1P_TT_long G1P_TT_lon 93.5 0.48 1.2E-05 24.7 11.5 205 322-572 22-227 (236)
161 PRK13368 3-deoxy-manno-octulos 93.4 0.51 1.3E-05 24.5 17.5 203 334-571 25-231 (238)
162 COG1213 Predicted sugar nucleo 92.8 0.28 7.1E-06 26.1 5.3 217 309-587 11-234 (239)
163 PRK05450 3-deoxy-manno-octulos 92.6 0.65 1.7E-05 23.9 16.8 192 334-548 25-223 (248)
164 pfam01983 CofC Guanylyl transf 92.6 0.66 1.7E-05 23.9 9.6 93 335-438 26-118 (217)
165 pfam03552 Cellulose_synt Cellu 91.4 0.4 1E-05 25.2 4.7 109 123-235 165-293 (716)
166 PRK13389 UTP--glucose-1-phosph 91.4 0.91 2.3E-05 23.0 10.1 188 330-542 34-252 (302)
167 cd02503 MobA MobA catalyzes th 91.1 0.98 2.5E-05 22.8 9.3 87 334-434 24-110 (181)
168 cd02517 CMP-KDO-Synthetase CMP 90.6 1.1 2.8E-05 22.5 16.1 190 334-549 24-219 (239)
169 pfam05045 RgpF Rhamnan synthes 90.4 1.1 2.8E-05 22.4 24.7 320 101-445 2-406 (498)
170 cd04182 GT_2_like_f GT_2_like_ 88.3 1.6 4.1E-05 21.5 8.6 101 334-443 24-126 (186)
171 PRK10122 UTP--glucose-1-phosph 88.0 1.7 4.2E-05 21.4 11.2 191 330-542 29-249 (297)
172 cd06426 NTP_transferase_like_2 85.9 2.2 5.6E-05 20.6 8.9 186 322-554 20-207 (220)
173 cd02523 PC_cytidylyltransferas 84.1 2.6 6.7E-05 20.2 7.5 97 321-432 19-116 (229)
174 pfam04666 Glyco_transf_54 N-Ac 83.7 2.8 7E-05 20.0 11.8 108 324-434 54-199 (301)
175 cd02540 GT2_GlmU_N_bac N-termi 83.6 2.8 7.1E-05 20.0 9.9 189 322-547 17-211 (229)
176 cd00505 Glyco_transf_8 Members 83.2 2.9 7.3E-05 19.9 12.4 112 326-441 1-128 (246)
177 KOG1022 consensus 83.0 2.9 7.5E-05 19.9 9.0 218 319-594 438-677 (691)
178 pfam06306 CgtA Beta-1,4-N-acet 82.7 3 7.7E-05 19.8 6.3 18 331-348 94-111 (347)
179 PRK02726 molybdopterin-guanine 82.2 3.1 8E-05 19.7 9.5 88 334-434 31-119 (200)
180 TIGR02665 molyb_mobA molybdopt 81.1 3.5 8.8E-05 19.4 6.5 92 333-437 24-124 (202)
181 cd04183 GT2_BcE_like GT2_BcbE_ 80.7 3.6 9.1E-05 19.3 11.0 114 321-444 19-134 (231)
182 cd06422 NTP_transferase_like_1 80.4 3.6 9.3E-05 19.3 16.2 175 321-543 20-199 (221)
183 pfam01644 Chitin_synth_1 Chiti 79.5 3.9 1E-04 19.1 7.7 17 76-92 2-18 (163)
184 COG1208 GCD1 Nucleoside-diphos 78.0 4.3 0.00011 18.8 9.9 170 72-253 26-206 (358)
185 pfam03360 Glyco_transf_43 Glyc 77.9 4.4 0.00011 18.8 5.0 88 353-445 9-116 (206)
186 TIGR03310 matur_ygfJ molybdenu 77.0 4.6 0.00012 18.7 9.1 96 333-436 22-118 (188)
187 cd04194 GT8_A4GalT_like A4GalT 71.2 6.5 0.00016 17.8 11.7 111 328-441 3-128 (248)
188 PRK00576 molybdopterin-guanine 70.9 6.6 0.00017 17.7 8.7 87 336-438 15-105 (178)
189 cd06425 M1P_guanylylT_B_like_N 70.0 6.8 0.00017 17.6 8.3 108 322-441 22-134 (233)
190 cd02541 UGPase_prokaryotic Pro 65.7 8.4 0.00021 17.1 7.8 216 322-573 22-259 (267)
191 TIGR02095 glgA glycogen/starch 64.7 8.8 0.00022 17.0 8.1 109 321-444 324-439 (517)
192 cd06429 GT8_like_1 GT8_like_1 64.1 9 0.00023 16.9 11.0 47 391-441 98-146 (257)
193 cd04198 eIF-2B_gamma_N The N-t 60.6 10 0.00027 16.5 10.2 101 330-437 26-128 (214)
194 TIGR03202 pucB xanthine dehydr 60.5 10 0.00027 16.5 11.3 96 334-434 24-122 (190)
195 TIGR00417 speE spermidine synt 60.4 7.7 0.0002 17.3 2.6 38 323-368 129-166 (284)
196 COG1210 GalU UDP-glucose pyrop 56.2 12 0.00031 16.1 6.8 72 372-444 86-160 (291)
197 pfam03808 Glyco_tran_WecB Glyc 53.0 14 0.00035 15.7 7.7 93 334-434 32-126 (172)
198 cd06428 M1P_guanylylT_A_like_N 52.1 14 0.00037 15.6 10.4 195 322-551 22-239 (257)
199 KOG1467 consensus 51.5 15 0.00037 15.6 6.3 57 329-388 362-418 (556)
200 KOG3765 consensus 51.5 15 0.00038 15.6 11.3 159 391-561 177-353 (386)
201 COG0746 MobA Molybdopterin-gua 50.2 15 0.00039 15.5 10.0 88 334-435 27-114 (192)
202 TIGR03552 F420_cofC 2-phospho- 50.0 15 0.0004 15.4 10.1 42 397-438 78-121 (195)
203 pfam05704 Caps_synth Capsular 48.8 16 0.00041 15.3 2.7 27 334-362 60-86 (279)
204 pfam05060 MGAT2 N-acetylglucos 48.8 16 0.00041 15.3 6.7 194 325-558 32-292 (357)
205 pfam01501 Glyco_transf_8 Glyco 47.5 17 0.00043 15.2 11.6 93 336-431 11-117 (244)
206 cd02518 GT2_SpsF SpsF is a gly 47.3 17 0.00044 15.2 11.7 95 334-437 22-117 (233)
207 TIGR01141 hisC histidinol-phos 46.5 12 0.00031 16.1 1.7 129 39-184 30-165 (377)
208 TIGR01099 galU UTP-glucose-1-p 46.2 18 0.00045 15.1 5.5 74 368-444 82-162 (270)
209 KOG1111 consensus 45.3 18 0.00047 15.0 6.4 102 325-442 195-300 (426)
210 COG2957 Peptidylarginine deimi 45.0 18 0.00046 15.0 2.4 32 327-361 294-325 (346)
211 TIGR01618 phage_P_loop phage n 44.3 19 0.00049 14.9 2.7 43 323-365 52-96 (229)
212 PRK00155 ispD 2-C-methyl-D-ery 44.3 19 0.00049 14.9 11.3 94 334-437 30-126 (228)
213 TIGR00232 tktlase_bact transke 44.3 19 0.00049 14.9 6.7 23 385-407 410-432 (675)
214 PRK13385 2-C-methyl-D-erythrit 44.1 19 0.00049 14.9 9.0 120 310-442 11-138 (238)
215 PRK06197 short chain dehydroge 44.1 19 0.00049 14.9 7.2 54 164-223 79-133 (306)
216 COG1211 IspD 4-diphosphocytidy 43.8 19 0.00049 14.9 9.0 96 334-437 30-129 (230)
217 TIGR01173 glmU UDP-N-acetylglu 43.3 20 0.0005 14.8 11.5 110 64-183 16-134 (461)
218 PRK10974 glycerol-3-phosphate 39.7 22 0.00057 14.5 8.2 60 98-158 27-91 (439)
219 pfam03314 DUF273 Protein of un 39.4 23 0.00058 14.4 4.5 18 406-423 40-57 (222)
220 pfam04123 DUF373 Domain of unk 39.1 23 0.00058 14.4 4.4 38 82-120 85-122 (344)
221 TIGR00453 ispD 2-C-methyl-D-er 37.4 24 0.00062 14.2 9.3 180 334-555 25-211 (226)
222 cd06533 Glyco_transf_WecG_TagA 37.3 24 0.00062 14.2 8.7 104 334-445 30-135 (171)
223 KOG1208 consensus 36.6 25 0.00064 14.2 7.0 17 207-223 136-152 (314)
224 PRK00139 murE UDP-N-acetylmura 36.0 26 0.00065 14.1 8.6 109 325-443 337-450 (481)
225 pfam01248 Ribosomal_L7Ae Ribos 35.6 26 0.00066 14.1 4.9 71 82-160 19-90 (95)
226 COG2266 GTP:adenosylcobinamide 35.4 26 0.00067 14.0 9.8 96 321-434 17-112 (177)
227 pfam01128 IspD Uncharacterized 35.0 27 0.00068 14.0 9.8 98 334-441 26-125 (221)
228 pfam03214 RGP Reversibly glyco 34.6 19 0.00048 14.9 1.2 100 67-176 8-119 (349)
229 TIGR02875 spore_0_A sporulatio 34.5 27 0.00069 14.0 5.9 56 98-165 3-60 (270)
230 PRK13551 agmatine deiminase; P 33.8 28 0.00071 13.9 3.2 32 327-361 307-338 (360)
231 TIGR02869 spore_SleB spore cor 33.4 26 0.00065 14.1 1.7 90 411-529 112-205 (232)
232 PRK05854 short chain dehydroge 33.4 28 0.00072 13.8 6.9 57 160-222 73-131 (314)
233 TIGR01458 HAD-SF-IIA-hyp3 HAD- 32.7 29 0.00074 13.8 5.1 78 357-442 90-179 (258)
234 KOG2264 consensus 32.1 30 0.00076 13.7 5.2 87 325-421 650-738 (907)
235 pfam02348 CTP_transf_3 Cytidyl 31.6 30 0.00077 13.7 7.7 95 334-438 22-119 (197)
236 pfam09960 DUF2194 Uncharacteri 31.5 30 0.00078 13.6 2.5 53 333-388 357-413 (573)
237 cd02516 CDP-ME_synthetase CDP- 31.3 31 0.00078 13.6 10.4 95 334-437 26-125 (218)
238 PRK01642 cls cardiolipin synth 30.9 31 0.00079 13.6 8.7 102 54-156 102-208 (485)
239 COG0088 RplD Ribosomal protein 30.8 31 0.0008 13.6 2.4 43 337-380 105-149 (214)
240 TIGR00438 rrmJ ribosomal RNA l 30.5 32 0.00081 13.5 1.9 37 509-547 135-171 (192)
241 COG1107 Archaea-specific RecJ- 30.4 32 0.00081 13.5 3.1 46 339-386 404-449 (715)
242 pfam04488 Gly_transf_sug Glyco 30.2 32 0.00082 13.5 3.1 26 337-364 2-27 (97)
243 KOG0385 consensus 29.6 33 0.00084 13.4 4.6 79 342-429 499-578 (971)
244 pfam01762 Galactosyl_T Galacto 29.4 33 0.00084 13.4 12.4 42 503-546 149-193 (196)
245 PRK00560 molybdopterin-guanine 29.3 33 0.00085 13.4 8.2 80 334-431 33-114 (196)
246 TIGR01821 5aminolev_synth 5-am 28.1 35 0.00089 13.3 5.6 172 338-543 95-296 (427)
247 PRK05319 rplD 50S ribosomal pr 27.0 36 0.00093 13.2 5.3 23 356-378 121-144 (206)
248 KOG3742 consensus 26.7 37 0.00094 13.1 3.7 38 81-118 86-133 (692)
249 TIGR00630 uvra excinuclease AB 26.1 38 0.00097 13.1 4.6 149 7-166 90-247 (956)
250 KOG0391 consensus 25.7 38 0.00098 13.0 5.3 18 402-419 1341-1358(1958)
251 TIGR03143 AhpF_homolog putativ 24.7 40 0.001 12.9 8.0 127 285-418 300-430 (555)
252 TIGR03380 agmatine_aguA agmati 24.7 40 0.001 12.9 3.9 32 327-361 306-337 (357)
253 cd04197 eIF-2B_epsilon_N The N 24.5 40 0.001 12.9 10.3 120 318-448 16-145 (217)
254 TIGR00407 proA gamma-glutamyl 24.1 41 0.0011 12.8 3.8 136 285-444 144-285 (415)
255 COG1519 KdtA 3-deoxy-D-manno-o 23.4 43 0.0011 12.8 10.6 281 64-446 47-328 (419)
256 PRK12483 threonine dehydratase 23.1 43 0.0011 12.7 1.4 11 422-432 355-365 (521)
257 PRK09224 threonine dehydratase 22.3 45 0.0011 12.6 1.4 12 422-433 338-349 (504)
258 cd02974 AhpF_NTD_N Alkyl hydro 22.0 45 0.0012 12.6 7.1 44 339-383 6-50 (94)
259 PRK06585 holA DNA polymerase I 21.9 46 0.0012 12.6 10.2 112 67-183 18-137 (343)
260 cd02524 G1P_cytidylyltransfera 21.7 46 0.0012 12.5 14.3 181 322-547 20-223 (253)
261 cd01777 SNX27_RA SNX27_RA SN 21.5 37 0.00094 13.1 0.7 17 495-511 69-86 (87)
262 TIGR00469 pheS_mito phenylalan 21.4 36 0.00092 13.2 0.7 21 373-393 325-345 (460)
263 CHL00133 psbV photosystem II c 21.0 31 0.00079 13.6 0.3 21 284-304 50-70 (163)
264 pfam09949 DUF2183 Uncharacteri 21.0 48 0.0012 12.5 5.3 80 290-385 13-93 (100)
265 cd02967 mauD Methylamine utili 20.9 48 0.0012 12.4 7.8 33 341-375 41-73 (114)
266 PRK12452 cardiolipin synthetas 20.8 48 0.0012 12.4 8.9 79 77-156 147-227 (509)
267 KOG2373 consensus 20.5 42 0.0011 12.8 0.9 29 144-172 136-164 (514)
No 1
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=100.00 E-value=0 Score=370.80 Aligned_cols=202 Identities=61% Similarity=0.995 Sum_probs=194.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 97899974758988899999999982889974899987757806799999998875798899980888856489999999
Q gi|254780918|r 67 PLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQ 146 (623)
Q Consensus 67 P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l~ 146 (623)
|+||||||+||.++++|++||+||++|||++||+|||||||+|.++.++++.+...+++|+++.+++|+|++.|+|.|++
T Consensus 1 P~vSViip~yN~~~~~l~~~l~Si~~Qt~~~~EiIvvDd~StD~~~~~~~~~~~~~~~~i~~~~~~~n~G~~~a~N~gi~ 80 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFREENGGISAATNSALE 80 (202)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 93999997488966999999999983789987999998998947899999998851885200126788789999886451
Q ss_pred HCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCHHHHCCCCCCCHHHHHHHHH
Q ss_conf 65998999976987527320799999987324755420222067589836542256678966741478543145768999
Q gi|254780918|r 147 LATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYDFNPELFHVHNMITHLGVYRTET 226 (623)
Q Consensus 147 ~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~~~~~~l~s~nyi~~~~~~rr~~ 226 (623)
.|+||||+|||+||++.|++|+.+++.+.++|+++++|+|++.++..|.+..|+|||+|+++++.+.++++|+.+|||++
T Consensus 81 ~a~geyi~flD~DD~~~p~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~ 160 (202)
T cd04184 81 LATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRSEPFFKPDWSPDLLLSQNYIGHLLVYRRSL 160 (202)
T ss_pred CCCCCEEEECCCCCEECHHHHHHHHHHHHHCCCCCEEECCHHEECCCCCEEECCCCCCCCHHHHHHCCCCCHHHHHHHHH
T ss_conf 36876677327785528439999999998689935997371168679978721247877988985347632036668999
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEEEEE
Q ss_conf 99718878987730274136788642487522006842279953
Q gi|254780918|r 227 FKKIGGFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVLYHWRM 270 (623)
Q Consensus 227 ~~~iGgf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vLy~~R~ 270 (623)
++++||||+.+.+++||||++|+.+++ .+|++||++|||||.
T Consensus 161 ~~~iGgfde~~~~~eD~dl~lRl~~~g--~ki~~ip~~Ly~yR~ 202 (202)
T cd04184 161 VRQVGGFREGFEGAQDYDLVLRVSEHT--DRIAHIPRVLYHWRA 202 (202)
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHC--CEEEEECHHHEEECC
T ss_conf 999589898888316999999999819--979992808849682
No 2
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=100.00 E-value=1.4e-45 Score=298.05 Aligned_cols=196 Identities=24% Similarity=0.341 Sum_probs=165.3
Q ss_pred EEEECCCCCC-HHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9997475898-889999999998288997489998775780679999999887579889998088885648999999965
Q gi|254780918|r 70 SVIMPVYKIK-KEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQLA 148 (623)
Q Consensus 70 SIiip~yn~~-~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l~~a 148 (623)
|||||+||.+ .+||++||+||++|||++||+|||||||++.++.++++++... .+++++.+++|.|++.|+|.|++.|
T Consensus 1 SViip~YN~e~~~~l~~~l~Svl~Qt~~~~EiIiVdDgSs~d~~~~i~~~~~~~-~~i~~i~~~~N~G~~~a~N~gi~~a 79 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRK-LPLKVVPLEKNRGLGKALNEGLKHC 79 (201)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 989988848978999999999995799981899998999965439999986147-9989998788789899977636426
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCHH---HHCCCCCCCH-HHHHHH
Q ss_conf 998999976987527320799999987324755420222067589836542256678966---7414785431-457689
Q gi|254780918|r 149 TSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYDFNPE---LFHVHNMITH-LGVYRT 224 (623)
Q Consensus 149 ~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~~~~~---~l~s~nyi~~-~~~~rr 224 (623)
+|+||+|||+||++.|++|+.+++.+.++|++++++++...++.++........|....+ .+...+.++| ..+|||
T Consensus 80 ~g~yI~~lD~DD~~~p~~l~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr 159 (201)
T cd04195 80 TYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRRLPTSHDDILKFARRRSPFNHPTVMFRK 159 (201)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 76699981889846716999999999878996999803799857897766797787505789988743987575289999
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEEEE
Q ss_conf 999971887898773027413678864248752200684227995
Q gi|254780918|r 225 ETFKKIGGFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVLYHWR 269 (623)
Q Consensus 225 ~~~~~iGgf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vLy~~R 269 (623)
++++++|||+ .+..+||||||+|++.++ .++.++|++|++||
T Consensus 160 ~~~~~~Gg~~-~~~~~eD~dl~lRl~~~G--~~~~~ipe~L~~yR 201 (201)
T cd04195 160 SKVLAVGGYQ-DLPLVEDYALWARMLANG--ARFANLPEILVKAR 201 (201)
T ss_pred HHHHHHCCCC-CCCCCHHHHHHHHHHHCC--CEEEECCCHHHEEC
T ss_conf 9999848999-889683499999999769--93999081685149
No 3
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=100.00 E-value=4.2e-45 Score=294.64 Aligned_cols=204 Identities=24% Similarity=0.368 Sum_probs=159.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCC-EEEEEECCCCCHHHHHHHHHHHHHHC--CCEEEEECCC----CCCHHHHHHH
Q ss_conf 997475898889999999998288997-48999877578067999999988757--9889998088----8856489999
Q gi|254780918|r 71 VIMPVYKIKKEWLEMAIESVRSQIYSH-WELCIAEDCSGDIETVSLLKKYANMD--SRIKVVFRAK----NGHISAASNS 143 (623)
Q Consensus 71 Iiip~yn~~~~~L~~~i~Si~~Qty~~-~EliivdD~S~d~~~~~~l~~~~~~d--~ri~~~~~~~----n~g~~~a~N~ 143 (623)
||||+||. ++||++||+||++|||++ ||||||||||+| .+.+++++|+.+. .|+.++.... |.|++.|+|.
T Consensus 1 VIiP~YN~-~~~l~~~l~Svl~Qty~~~~EiIiVDDgStD-~t~~ii~~~~~~~~~~~~~~~~~~~~~~~~~G~~~arN~ 78 (219)
T cd06913 1 IILPVHNG-EQWLDECLESVLQQDFEGTLELSVFNDASTD-KSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQ 78 (219)
T ss_pred CEECCCCC-HHHHHHHHHHHHHCCCCCCEEEEEEECCCCC-CHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHH
T ss_conf 98867898-8999999999984889998999999899981-569999999986667776999823677664678999999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCHHHHCCC------CC-C
Q ss_conf 9996599899997698752732079999998732475542022206758983654225667896674147------85-4
Q gi|254780918|r 144 AAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYDFNPELFHVH------NM-I 216 (623)
Q Consensus 144 ~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~~~~~~l~s~------ny-i 216 (623)
|++.|+||||+|||+||++.|++|+.++..+.++|. +++++....+.+++......+......+.+... +. +
T Consensus 79 gi~~A~GeyI~flDsDD~~~p~~l~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (219)
T cd06913 79 AIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPN-SIIGCQVRRIPEDSTERYTRWINTLTREQLLTQVYTSHGPTVI 157 (219)
T ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC-CEEEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 999778887886189764276599999999985999-6999878996699852313223568989999988761698344
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCCCC
Q ss_conf 31457689999971887898773-0274136788642487522006842279953388533880
Q gi|254780918|r 217 THLGVYRTETFKKIGGFREKFEG-AQDYDLVLRFLENIDLSQIIHIPRVLYHWRMHDNSTAQKI 279 (623)
Q Consensus 217 ~~~~~~rr~~~~~iGgf~~~~~~-~~D~Dl~lR~~~~~~~~~i~hip~vLy~~R~~~~s~~~~~ 279 (623)
....++||+++.++|||++.+.+ .+|++|++|++..+ .+|.++|++||+||.|++|++.++
T Consensus 158 ~~~~~~rr~~~~~~g~f~e~~~~~~ED~~~~~r~l~~~--~~i~~i~~~L~~YR~H~~s~T~s~ 219 (219)
T cd06913 158 MPTWFCSREWFSHVGPFDEGGKGVPEDLLFFYEHLRKG--GGVYRVDRCLLLYRYHPGATTHSV 219 (219)
T ss_pred EHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC--CCEEEECCCEEEEEECCCCCCCCC
T ss_conf 00355329999992899965786702899999999749--969996997799997698550269
No 4
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=100.00 E-value=7e-45 Score=293.15 Aligned_cols=204 Identities=23% Similarity=0.301 Sum_probs=172.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCE-EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 999747589888999999999828899748999877578067999999988757988-9998088885648999999965
Q gi|254780918|r 70 SVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRI-KVVFRAKNGHISAASNSAAQLA 148 (623)
Q Consensus 70 SIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri-~~~~~~~n~g~~~a~N~~l~~a 148 (623)
|||||+||. ++||++||+||++|||++||+|||||||+| .+.++++++...++++ +++.++.|.|.+.++|.|++.|
T Consensus 1 SViip~yN~-~~~l~~~i~Sil~Qt~~~~EiivvDDgStD-~t~~ii~~~~~~~~~~~~~~~~~~n~G~~~n~n~gi~~a 78 (214)
T cd04196 1 AVLMATYNG-EKYLREQLDSILAQTYKNDELIISDDGSTD-GTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAA 78 (214)
T ss_pred CEEEEECCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCC-CHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHC
T ss_conf 989991798-889999999998379988699999899972-379999999975886513666588805999999999864
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCC---C---CCCH-HHHCCCCCCCHHHH
Q ss_conf 998999976987527320799999987324755420222067589836542256---6---7896-67414785431457
Q gi|254780918|r 149 TSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFK---Y---DFNP-ELFHVHNMITHLGV 221 (623)
Q Consensus 149 ~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fk---p---~~~~-~~l~s~nyi~~~~~ 221 (623)
+||||+++|+||++.|++|+.+++.+.++|++++++++...+++.+....+.+. + .... ..+......+...+
T Consensus 79 ~geyi~~lD~DD~~~p~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (214)
T cd04196 79 DGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQNVVTGCTMA 158 (214)
T ss_pred CCCEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 78757413776562865999999999858990899927399989998923443333567702339999971888761899
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCCC
Q ss_conf 689999971887898773027413678864248752200684227995338853388
Q gi|254780918|r 222 YRTETFKKIGGFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVLYHWRMHDNSTAQK 278 (623)
Q Consensus 222 ~rr~~~~~iGgf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vLy~~R~~~~s~~~~ 278 (623)
+||++++++|+|++.+...+||+|++|+... ++|+++|++|++||+|++|.++.
T Consensus 159 ~Rk~~~~~~g~~~~~~~~~~D~~l~l~~~~~---~~i~~i~~~l~~YR~H~~sis~~ 212 (214)
T cd04196 159 FNRELLELALPFPDADVIMHDWWLALLASAF---GKVVFLDEPLILYRQHGNNVVGA 212 (214)
T ss_pred EEHHHHHHHCCCCCCCCCCHHHHHHHHHHHC---CCEEEECCCEEEEEEECCCCCCC
T ss_conf 8899999857999444745499999999968---98999889879999728846176
No 5
>PRK10018 predicted glycosyl transferase; Provisional
Probab=100.00 E-value=4.1e-44 Score=288.51 Aligned_cols=212 Identities=25% Similarity=0.381 Sum_probs=167.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-HHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
Q ss_conf 458978999747589888999999999828899748999877578067-9999999887579889998088885648999
Q gi|254780918|r 64 QNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIE-TVSLLKKYANMDSRIKVVFRAKNGHISAASN 142 (623)
Q Consensus 64 ~~~P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~-~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N 142 (623)
+.+|+||||||+||. +++|.+||+||++|||+|||+|||||||+|.+ +..++.+ ..|+||+++.++.|+|++.|+|
T Consensus 2 ~~~PlVSVIIP~yN~-~~~l~~aI~SVl~Qty~n~EiIIVDD~Std~~~~~~~~~~--~~d~RI~~i~~~~N~G~~~aRN 78 (279)
T PRK10018 2 KDNPLISIYMPTWNR-QQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTA--LNDPRITYIHNDINSGACAVRN 78 (279)
T ss_pred CCCCCEEEEECCCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHH--CCCCCEEEEECCCCCCHHHHHH
T ss_conf 999809999947997-7999999999995799898999998999987999999997--5899889998789788999999
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEE----ECC-CCCCCHHHHCCCCCCC
Q ss_conf 99996599899997698752732079999998732475542022206758983654----225-6678966741478543
Q gi|254780918|r 143 SAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSG----PYF-KYDFNPELFHVHNMIT 217 (623)
Q Consensus 143 ~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~----p~f-kp~~~~~~l~s~nyi~ 217 (623)
.|++.|+|+||+|||+||.+.|++|+.++++..+.+...++|+.. .|..+..... |.+ +..+++.++...|++|
T Consensus 79 ~gi~~A~GeyIafLDsDD~~~PnkLE~ql~~~~~~~~~a~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~vg 157 (279)
T PRK10018 79 QAIMLAQGEYITGIDDDDEWTPNRLSVFLAHKQQLVTHAFLYAND-YVCQGEVYSQPASLPLYPKSPYSRRLFYKRNIIG 157 (279)
T ss_pred HHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCC-EEECCCEEECCCCCCCCCCCCCCHHHHHCCCCCC
T ss_conf 999995699899999876878566999996144227635873245-6853825844666546675543388775045436
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCCCCHHH
Q ss_conf 14576899999718878987730274136788642487522006842279953388533880134
Q gi|254780918|r 218 HLGVYRTETFKKIGGFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVLYHWRMHDNSTAQKIGNK 282 (623)
Q Consensus 218 ~~~~~rr~~~~~iGgf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vLy~~R~~~~s~~~~~~~k 282 (623)
..+..++..+ +.++||+.+..+||||||+|++.+.+ ...++.+..|.+++..+++......|
T Consensus 158 n~vf~~~~~~-k~~~FDe~l~~~qDyD~wlRL~~~yG--~~~~~~~~~~~~~~~~~~~~it~~~~ 219 (279)
T PRK10018 158 NQVFTWAWRF-KECLFDTELKAAQDYDIFLRMVVEYG--EPWKVEEATQILHINHGEMQITSSPK 219 (279)
T ss_pred CEEEEEHHHH-HHHCCCCCCCCCCCHHHHHHHHHHHC--CCEECCCCCEEEEECCCCCEECCCHH
T ss_conf 3676677876-56125456774210999999999859--73442776379996288430037588
No 6
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=100.00 E-value=9.9e-44 Score=286.14 Aligned_cols=201 Identities=32% Similarity=0.440 Sum_probs=174.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99974758988899999999982889974899987757806799999998875798899980888856489999999659
Q gi|254780918|r 70 SVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQLAT 149 (623)
Q Consensus 70 SIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l~~a~ 149 (623)
|||||+||. +++|++||+||++|||++||+|||||+|+|. +.++++++.. .++++ ..+.|.|++.|+|.|++.|+
T Consensus 1 SViip~yN~-~~~l~~~l~Si~~Q~~~~~EiIvVDd~S~D~-t~~~~~~~~~--~~~~~-~~~~~~G~~~a~N~g~~~a~ 75 (202)
T cd06433 1 SIITPTYNQ-AETLEETIDSVLSQTYPNIEYIVIDGGSTDG-TVDIIKKYED--KITYW-ISEPDKGIYDAMNKGIALAT 75 (202)
T ss_pred CEEEEECCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCC-HHHHHHHCCC--CEEEE-EECCCCCHHHHHHHHHHHCC
T ss_conf 999997698-8999999999983789997999997998842-3445331134--12599-98888888999873277548
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCHHHHCCCCCCCHH-HHHHHHHHH
Q ss_conf 9899997698752732079999998732475542022206758983654225667896674147854314-576899999
Q gi|254780918|r 150 SEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYDFNPELFHVHNMITHL-GVYRTETFK 228 (623)
Q Consensus 150 Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~~~~~~l~s~nyi~~~-~~~rr~~~~ 228 (623)
|+||+|||+||++.|+.++.++..+.+++++++++++...++..+.......++.+....+...++++|. .++||++++
T Consensus 76 g~yi~~ld~DD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 155 (202)
T cd06433 76 GDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRRPPPFLDKFLLYGMPICHQATFFRRSLFE 155 (202)
T ss_pred CCEEECCCCCCEECCHHHHHHHHHHHHCCCCCEEECCEEEECCCCCEEEEECCCCCCHHHHHCCCCCCCCCEEEEEEEHH
T ss_conf 55532248886268449999999998789940999346998699968754226653678885468866651356403045
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCC
Q ss_conf 7188789877302741367886424875220068422799533885338
Q gi|254780918|r 229 KIGGFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVLYHWRMHDNSTAQ 277 (623)
Q Consensus 229 ~iGgf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vLy~~R~~~~s~~~ 277 (623)
++||||+.|..++|+||++|+..++ .+|.++|++|++||.|++|+++
T Consensus 156 ~ig~fd~~~~~~eD~d~~~R~~~~g--~~i~~ip~~l~~yR~h~~S~t~ 202 (202)
T cd06433 156 KYGGFDESYRIAADYDLLLRLLLAG--KIFKYLPEVLAAFRLGGVSSTS 202 (202)
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHCC--CCEEECCCCEEEEECCCCCCCC
T ss_conf 5089886768022999999999839--9399848778999469863374
No 7
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=100.00 E-value=2e-42 Score=278.11 Aligned_cols=235 Identities=22% Similarity=0.247 Sum_probs=165.3
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCC--CEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 16999953774556999998764207975--1579971489981689999999863088827997578887338898987
Q gi|254780918|r 325 LVSIIIPTYNHHHLLKICLESIYHKTTYS--SFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNA 402 (623)
Q Consensus 325 ~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~--~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g 402 (623)
+||||||+||+.+.|++||+||.+|+ || ++|||||||+|+| +|.+.++++..+++.++++... +.+.++++|.|
T Consensus 1 lVSViIp~yN~~~~l~~~l~Sl~~q~-yp~~~~EVIvVDd~S~D-~t~~~~~~~~~~~~~i~~~~~~--~~~~~~a~N~g 76 (249)
T cd02525 1 FVSIIIPVRNEEKYIEELLESLLNQS-YPKDLIEIIVVDGGSTD-GTREIVQEYAAKDPRIRLIDNP--KRIQSAGLNIG 76 (249)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCC-CCCCCEEEEEEECCCCC-CHHHHHHHHHHCCCCEEECCCC--CCCHHHHHHHH
T ss_conf 98999935697899999999998468-99998899999895961-5699999997407713211355--56589999898
Q ss_pred HHHCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCC
Q ss_conf 86148974744058827828168899887742898169953766467675677870441325406786566432256555
Q gi|254780918|r 403 TLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKAR 482 (623)
Q Consensus 403 ~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~ 482 (623)
++.|+||||+|+|+|+.+ +|+||++|+..++.+++++||+..... +.+..+... . ..........
T Consensus 77 i~~a~gd~i~~lD~D~~~-~~~~l~~~~~~~~~~~~~~v~g~~~~~------~~~~~~~~~-~-----~~~~~~~~~~-- 141 (249)
T cd02525 77 IRNSRGDIIIRVDAHAVY-PKDYILELVEALKRTGADNVGGPMETI------GESKFQKAI-A-----VAQSSPLGSG-- 141 (249)
T ss_pred HHHCCCCEEEEECCCCCC-CHHHHHHHHHHHHCCCCEEEEEEEEEC------CCCHHHHHH-H-----HHHHCCCCCC--
T ss_conf 996687768841477656-956999999998778971999888506------897277777-8-----8762643235--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEECCCCCC
Q ss_conf 57644222233444441110110204388889871799976876323168899999974981998475499951773367
Q gi|254780918|r 483 CSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHDESRTRK 562 (623)
Q Consensus 483 ~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~es~srg 562 (623)
...+ ...........+|+|+++||++|+++|||||. | ..+||+|||+|++++||+++|+|++.++|+...|-.
T Consensus 142 --~~~~---~~~~~~~~~~~~~~~~~~rr~~~~~iGgfde~-~-~~~ED~dl~~R~~~~G~ki~~~p~a~v~h~~~~s~~ 214 (249)
T cd02525 142 --GSAY---RGGAVKIGYVDTVHHGAYRREVFEKVGGFDES-L-VRNEDAELNYRLRKAGYKIWLSPDIRVYYYPRSTLK 214 (249)
T ss_pred --CCCC---CCCCCCCCEECCEEEEEEEHHHHHHHCCCCCC-C-CCCHHHHHHHHHHHCCCEEEEECCEEEEEECCCCHH
T ss_conf --2000---13224584542135798888899973899877-7-823899999999976997999188799998999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76689999999999999999883888
Q gi|254780918|r 563 YDHEDPAKMIVFQEACQYLQKRWKKI 588 (623)
Q Consensus 563 ~~~~~~~k~~~~~~~~~~~~~rW~~~ 588 (623)
. --.++.|+.+-...+.+||++.
T Consensus 215 --~-~~~Q~~Rw~~g~~~~~~k~~~~ 237 (249)
T cd02525 215 --K-LARQYFRYGKWRARTLRKHRKS 237 (249)
T ss_pred --H-HHHHHHHHHHHHHHHHHHCCCC
T ss_conf --9-9999999989999999974253
No 8
>PRK10073 predicted glycosyl transferase; Provisional
Probab=100.00 E-value=3.1e-42 Score=277.01 Aligned_cols=211 Identities=21% Similarity=0.338 Sum_probs=167.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
Q ss_conf 45897899974758988899999999982889974899987757806799999998875798899980888856489999
Q gi|254780918|r 64 QNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNS 143 (623)
Q Consensus 64 ~~~P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~ 143 (623)
...|+||||||+||. ++||++||+||++|||+++|+|+||||||| .+.+++++|+..++||+++. ++|+|++.|+|.
T Consensus 3 ~~~P~vSiiiP~YN~-e~yl~~cl~Si~~Qt~~~~EiIiVdDgStD-~s~~i~~~~~~~~~~i~vi~-~~N~G~s~ARN~ 79 (329)
T PRK10073 3 NSTPKLSIIVPLYNA-GKDFRACMESLIAQTWTALEIIIVNDGSTD-NSVEIAKHYAENYPHVRLLH-QANAGASVARNT 79 (329)
T ss_pred CCCCCEEEEEECCCC-HHHHHHHHHHHHCCCCCCEEEEEEECCCCC-CHHHHHHHHHHHCCCEEEEE-CCCCCHHHHHHH
T ss_conf 999978999928898-899999999998089999799999899982-58999999981299899996-688861899999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCC-------C-CHHHH----C
Q ss_conf 9996599899997698752732079999998732475542022206758983654225667-------8-96674----1
Q gi|254780918|r 144 AAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYD-------F-NPELF----H 211 (623)
Q Consensus 144 ~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~-------~-~~~~l----~ 211 (623)
|++.|+|+||+|+|+||.+.|++++.++..+.+ .++|++.++...+.+++....+.+..+ + .++.+ .
T Consensus 80 gl~~a~G~yi~f~DsDD~l~~~~le~l~~~a~~-~~~DIv~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~l~~~l~ 158 (329)
T PRK10073 80 GLAVATGKYVAFVDADDEVYPTMYETLMTMALE-DDLDVAQCNADWCYRDTGEAWQSIPTDRLRSTGVLTGPDWLRMALS 158 (329)
T ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHH-CCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 999748888999757727588769999999974-7999999878899946972234453002343552063999999874
Q ss_pred CCCCCCH--HHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCCCCHH
Q ss_conf 4785431--4576899999718-87898773027413678864248752200684227995338853388013
Q gi|254780918|r 212 VHNMITH--LGVYRTETFKKIG-GFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVLYHWRMHDNSTAQKIGN 281 (623)
Q Consensus 212 s~nyi~~--~~~~rr~~~~~iG-gf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vLy~~R~~~~s~~~~~~~ 281 (623)
+..+... ..+|||+++.+-| .|.++.- .||..|...+...+ .+|..+|++||+||++++|.+..+..
T Consensus 159 ~~~~~~~~W~klyRr~~l~~n~irF~~gi~-~ED~~f~~~~l~~A--~rI~~i~~~lY~Yrir~~SIs~~~~~ 228 (329)
T PRK10073 159 SRRWTHVVWMGVYRRDFIVKNNIKFEPGLH-HQDIPWTTEVMFNA--LRVRYTEQSLYKYYLHNTSVSRLPRQ 228 (329)
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHHHHC--CEEEEECCCEEEEEECCCCCCCCCCC
T ss_conf 166514589899999999986986699981-04668999999968--95999678489989789977578865
No 9
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=100.00 E-value=2.4e-41 Score=271.53 Aligned_cols=220 Identities=22% Similarity=0.308 Sum_probs=158.0
Q ss_pred EEECCC-CHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 995377-4556999998764207975157997148998168999999986308882799757888733889898786148
Q gi|254780918|r 329 IIPTYN-HHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHAK 407 (623)
Q Consensus 329 IIp~~n-~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a~ 407 (623)
||+||| +.+.|.+||+||..|++ |||||||+|+|. +.+. +....++++++.. +++.|+|+++|.|++.|+
T Consensus 2 VIVtYn~~~~~l~~~L~sl~~q~~----eIiVVDN~S~d~-~~~~---~~~~~~~v~~i~~-~~N~G~a~g~N~Gi~~a~ 72 (237)
T cd02526 2 VVVTYNPDLSKLKELLAALAEQVD----KVVVVDNSSGND-IELR---LRLNSEKIELIHL-GENLGIAKALNIGIKAAL 72 (237)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCC----EEEEEECCCCHH-HHHH---HHHCCCCEEEEEC-CCCCCHHHHCCCCCHHHH
T ss_conf 998738989999999997663799----899996988902-8999---9861998699989-997785887274303341
Q ss_pred C---CEEEEECCCCEEECHHHHHHHHHHH----CCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCC
Q ss_conf 9---7474405882782816889988774----28981699537664676756778704413254067865664322565
Q gi|254780918|r 408 G---QYFCFLNNDTEVINGQWLSEMMGIA----SQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHK 480 (623)
Q Consensus 408 g---eyilfLn~D~~v~~~~wL~~Ll~~~----~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~ 480 (623)
+ ||++|||+|+.+ +|+||+.|+..+ ..+++|++||++.........+ +.. .....
T Consensus 73 ~~~~d~i~~ln~D~~~-~~~~l~~l~~~~~~~~~~~~vg~~~p~~~d~~~~~~~~-------~~~----------~~~~~ 134 (237)
T cd02526 73 ENGADYVLLFDQDSVP-PPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSP-------GVR----------KSGYK 134 (237)
T ss_pred CCCCCEEEEECCCCCC-CHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCC-------CCC----------CCCCC
T ss_conf 1797789993575655-90599999999985222798899971798689980045-------421----------12533
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEECCCC
Q ss_conf 55576442222334444411101102043888898717999768763231688999999749819984754999517733
Q gi|254780918|r 481 ARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHDESRT 560 (623)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~es~s 560 (623)
..... .......++..+.+++||+||++|+++|||||.+| +++||+|||+|++++||+++|+|.|.++|.+|.|
T Consensus 135 ~~~~~-----~~~~~~~~~~~~~~sg~lir~~~~~~vG~fde~fF-~y~ED~Dl~~R~~~~G~~i~~~p~a~v~H~~G~~ 208 (237)
T cd02526 135 LRIQK-----EGEEGLKEVDFLITSGSLISLEALEKVGGFDEDLF-IDYVDTEWCLRARSKGYKIYVVPDAVLKHELGDK 208 (237)
T ss_pred CCCCC-----CCCCCCEECCEEEECCEEEEHHHHHHHCCCCHHHC-CCCCHHHHHHHHHHCCCCEEEECCEEEEECCCCC
T ss_conf 22354-----42478446043030143778999998579968977-9371999999999859979998988999789984
Q ss_pred CCCC-------CCCHHHHHHHHHHHHHH
Q ss_conf 6776-------68999999999999999
Q gi|254780918|r 561 RKYD-------HEDPAKMIVFQEACQYL 581 (623)
Q Consensus 561 rg~~-------~~~~~k~~~~~~~~~~~ 581 (623)
.... ..+|.|.....|++-+|
T Consensus 209 ~~~~~~~~~~~~~s~~~~Yy~~RN~~~l 236 (237)
T cd02526 209 RVKRLGGVSVPLHSPLRRYYLFRNAIYL 236 (237)
T ss_pred CCCCCCCEECCCCCHHHHHHHHHHHHHH
T ss_conf 5124574342356778899998548775
No 10
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=100.00 E-value=5.9e-40 Score=263.01 Aligned_cols=223 Identities=29% Similarity=0.521 Sum_probs=163.2
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 88169999537745569999987642079751579971489981689999999863088827997578887338898987
Q gi|254780918|r 323 PPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNA 402 (623)
Q Consensus 323 ~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g 402 (623)
.|.||+||++||+.+.+..||+|+.+++ ++..++++|||+|+|+ +.+.++... .++++++... ++.|||+++|.|
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~~~-~~~~~iv~vDn~s~d~-~~~~~~~~~--~~~v~~i~~~-~NlG~agg~n~g 76 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAAQT-YPDDVIVVVDNGSTDG-SLEALKARF--FPNVRLIENG-ENLGFAGGFNRG 76 (305)
T ss_pred CCCEEEEEEEECCHHHHHHHHHHHHHCC-CCCCEEEEECCCCCCC-HHHHHHHHC--CCCEEEEECC-CCCEEHHHHHHH
T ss_conf 8735999999688889999999997176-8763599807999732-288877605--8868999889-886708888899
Q ss_pred HHHCCCC---EEEEECCCCEEECHHHHHHHHHHHC-CCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCC
Q ss_conf 8614897---4744058827828168899887742-89816995376646767567787044132540678656643225
Q gi|254780918|r 403 TLHAKGQ---YFCFLNNDTEVINGQWLSEMMGIAS-QPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKH 478 (623)
Q Consensus 403 ~~~a~ge---yilfLn~D~~v~~~~wL~~Ll~~~~-~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~ 478 (623)
++.|.++ |+++||+|+ +++++||++|+..+. .+.+++||+++.+.+.....+ ..| . ......+....
T Consensus 77 ~~~a~~~~~~~~l~LN~D~-~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~-~-~~~~~~~~~~~- 147 (305)
T COG1216 77 IKYALAKGDDYVLLLNPDT-VVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYID-----RRG-G-ESDGLTGGWRA- 147 (305)
T ss_pred HHHHHCCCCCEEEEEECCC-CCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC-----CCC-C-CCCCCCCCHHC-
T ss_conf 9998628984899983886-8790699999999986898779634654887532344-----345-6-44433220002-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEECC
Q ss_conf 65555764422223344444111011020438888987179997687632316889999997498199847549995177
Q gi|254780918|r 479 HKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHDES 558 (623)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~es 558 (623)
.......+... ........++|+||+||+++|+++|||||++| +++||+|||+|++++||+++++|.+.++|..+
T Consensus 148 ~~~~~~~~~~~----~~~~~~~~~~G~~~li~~~~~~~vG~~de~~F-~y~eD~D~~~R~~~~G~~i~~~p~a~i~H~~g 222 (305)
T COG1216 148 SPLLEIAPDLS----SYLEVVASLSGACLLIRREAFEKVGGFDERFF-IYYEDVDLCLRARKAGYKIYYVPDAIIYHKIG 222 (305)
T ss_pred CCCCCCCCCCC----CCCHHHHHCCCCEEEEEHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHCCCCEEEEECEEEEECCC
T ss_conf 43334444333----42013332256179974999998479876872-10068799999997599699800459997377
Q ss_pred CCCCCC
Q ss_conf 336776
Q gi|254780918|r 559 RTRKYD 564 (623)
Q Consensus 559 ~srg~~ 564 (623)
.|.+..
T Consensus 223 ~s~~~~ 228 (305)
T COG1216 223 SSKGSS 228 (305)
T ss_pred CCCCCC
T ss_conf 777776
No 11
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=100.00 E-value=7.2e-40 Score=262.52 Aligned_cols=165 Identities=40% Similarity=0.723 Sum_probs=144.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99953774556999998764207975157997148998168999999986308882799757888733889898786148
Q gi|254780918|r 328 IIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHAK 407 (623)
Q Consensus 328 IIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a~ 407 (623)
||||+||+.+.|.+||+||.+|| ++++|||||||+|+|+ |.+++++ ..++++++.. +++.|++++.|.|++.|+
T Consensus 1 VIIptyN~~~~l~~~l~Sl~~q~-~~~~eiivVD~~S~d~-t~~~~~~---~~~~i~~i~~-~~n~G~~~a~N~g~~~a~ 74 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLAQT-YPDFEVIVVDNASTDG-SVELLRE---LFPEVRLIRN-GENLGFGAGNNQGIREAK 74 (166)
T ss_pred EEEEECCCHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCH-HHHHHHH---CCCCEEEEEC-CCCCCHHHHHHHHHHHHC
T ss_conf 69998898899999999998377-9980999996899831-5677774---2898899989-898776787616898716
Q ss_pred CCEEEEECCCCEEECHHHHHHHHHHHC-CCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 974744058827828168899887742-8981699537664676756778704413254067865664322565555764
Q gi|254780918|r 408 GQYFCFLNNDTEVINGQWLSEMMGIAS-QPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSVP 486 (623)
Q Consensus 408 geyilfLn~D~~v~~~~wL~~Ll~~~~-~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~~~~ 486 (623)
|||++|+|+|+. +.|+||+.|+..+. .|++|++||+
T Consensus 75 g~~i~~lD~D~~-~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------------------ 111 (166)
T cd04186 75 GDYVLLLNPDTV-VEPGALLELLDAAEQDPDVGIVGPK------------------------------------------ 111 (166)
T ss_pred CCCEEEECCCEE-ECCCHHHHHHHHHHHCCCEEEEEEC------------------------------------------
T ss_conf 572699879938-8839999999999869798999950------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEEC
Q ss_conf 42222334444411101102043888898717999768763231688999999749819984754999517
Q gi|254780918|r 487 NYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHDE 557 (623)
Q Consensus 487 ~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~e 557 (623)
++|+||++||++|+++|||||.++ .++||.|||+|++++||+++|+|.+.++||+
T Consensus 112 ---------------~~g~~~~~rr~~~~~vGgfde~~~-~~~ED~dl~~R~~~~G~~i~~~p~~~v~H~G 166 (166)
T cd04186 112 ---------------VSGAFLLVRREVFEEVGGFDEDFF-LYYEDVDLCLRARLAGYRVLYVPQAVIYHHG 166 (166)
T ss_pred ---------------CCEEEEEEEHHHHHHHCCCCHHHC-CCCCHHHHHHHHHHCCCCEEEECCEEEEEEC
T ss_conf ---------------548999999999998589976865-7465999999999829949994998999869
No 12
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=100.00 E-value=3.5e-39 Score=258.29 Aligned_cols=177 Identities=19% Similarity=0.239 Sum_probs=147.7
Q ss_pred EEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHC--
Q ss_conf 995377455699999876420797515799714899816899999998630888279975788873388989878614--
Q gi|254780918|r 329 IIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHA-- 406 (623)
Q Consensus 329 IIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a-- 406 (623)
||||||+.+.|++||+||.+|+ |++.|||||||+|+| +|.+.++++... .+++++.. +.+.|+++++|.|++.|
T Consensus 2 VI~t~N~~~~l~~~L~Sl~~q~-~~~~eIiVVDn~StD-~t~~~l~~~~~~-~~v~~i~~-~~N~G~a~~~N~Gi~~a~~ 77 (202)
T cd04185 2 VVVTYNRLDLLKECLDALLAQT-RPPDHIIVIDNASTD-GTAEWLTSLGDL-DNIVYLRL-PENLGGAGGFYEGVRRAYE 77 (202)
T ss_pred EEEECCCHHHHHHHHHHHHHCC-CCCCEEEEEECCCCC-CHHHHHHHHCCC-CCEEEEEC-CCCCCHHHHHHHHHHHHHH
T ss_conf 9900288899999999998277-999889999794987-616653000356-66899856-8887327899999998875
Q ss_pred -CCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf -8974744058827828168899887742898169953766467675677870441325406786566432256555576
Q gi|254780918|r 407 -KGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSV 485 (623)
Q Consensus 407 -~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~~~ 485 (623)
.+|||+|+|+|+. .+|+||++|++.++.+++++++|...+ ++++ |
T Consensus 78 ~~~d~v~~ld~D~~-~~~~~l~~l~~~~~~~~~~~~~~~~~~-------~~~~-----------------F--------- 123 (202)
T cd04185 78 LGYDWIWLMDDDAI-PDPDALEKLLAYADKDNPQFLAPLVLD-------PDGS-----------------F--------- 123 (202)
T ss_pred CCCEEEEEECCCCC-CCCCHHHHHHHHHHCCCCEEEEEEEEC-------CCCC-----------------E---------
T ss_conf 59818999899875-492299999998657997799978984-------7999-----------------8---------
Q ss_pred CCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEECCCCCCCC
Q ss_conf 4422223344444111011020438888987179997687632316889999997498199847549995177336776
Q gi|254780918|r 486 PNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHDESRTRKYD 564 (623)
Q Consensus 486 ~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~es~srg~~ 564 (623)
..+|+||++|+++|||||.+| .++||+|||+|++++||++ |+|.+.|+|+.+.|.|..
T Consensus 124 -------------------~g~l~~r~v~~~vG~fde~~f-~~~eD~D~~~R~~~~G~~i-~~p~a~v~H~~~~~~~~~ 181 (202)
T cd04185 124 -------------------VGVLISRRVVEKIGLPDKEFF-IWGDDTEYTLRASKAGPGI-YVPDAVVVHKTAINKGSS 181 (202)
T ss_pred -------------------EEEEEEHHHHHHHCCCCHHHC-CCCCHHHHHHHHHHCCCCE-EECCEEEEECCCCCCCCC
T ss_conf -------------------999888999997589976866-7382999999999749969-977889998787778886
No 13
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=100.00 E-value=3e-38 Score=252.57 Aligned_cols=198 Identities=23% Similarity=0.325 Sum_probs=142.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 69999537745569999987642079751579971489981689999999863088827997578887338898987861
Q gi|254780918|r 326 VSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLH 405 (623)
Q Consensus 326 VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~ 405 (623)
||||||+||+.+.|.+||+||.+|+ ++++|||||||||+| .|.+.+++. .++++.. +-|.++++|.|+++
T Consensus 1 VSVIIP~yNe~~~l~~~L~Sl~~q~-~~~~EvIVVDdgStD-~T~~i~~~~-----~~~~~~~---~~G~a~a~N~G~~~ 70 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRRLN-PLPLEIIVVDGGSTD-GTVAIARSA-----GVVVISS---PKGRARQMNAGAAA 70 (221)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCC-CCCEEEEEEECCCCC-CHHHHHHHH-----CCEEEEC---CCCHHHHHHHHHHH
T ss_conf 9899960788889999999997578-998389999896987-649999972-----5225526---97879999999986
Q ss_pred CCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 48974744058827828168899887742898169953766467675677870441325406786566432256555576
Q gi|254780918|r 406 AKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSV 485 (623)
Q Consensus 406 a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~~~ 485 (623)
|+||||+|||+|+. +.|+||+.++..+..+.+.+++..+.... .+..... . . . .
T Consensus 71 A~Ge~i~flDaD~~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~---------~---~--~-----~ 124 (221)
T cd02522 71 ARGDWLLFLHADTR-LPPDWDAAIIETLRADGAVAGAFRLRFDD------PGPRLRL---------L---E--L-----G 124 (221)
T ss_pred CCCCEEEEECCCCC-CCCCHHHHHHHHHHCCCCCEEEEEEEECC------CCHHHHH---------H---H--H-----H
T ss_conf 78887998775236-89069999999997399845555687659------9657889---------9---9--9-----8
Q ss_pred CCCCCCCCCCCCCCCCCCH-HEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEECCCCCCCC
Q ss_conf 4422223344444111011-020438888987179997687632316889999997498199847549995177336776
Q gi|254780918|r 486 PNYQAFAMHFTHSISAVTG-ACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHDESRTRKYD 564 (623)
Q Consensus 486 ~~~~~~~~~~~~~~savtg-acllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~es~srg~~ 564 (623)
+.... . ......| .||++||++|+++|||||.++ +||+|||+|++++| +.++.|.+.++|. |.++
T Consensus 125 ~~~~~---~---~~~~~~G~~~~~iRr~~f~~vGGFde~~~---~ED~dL~~Rl~~~G-~~~~~p~~v~~s~----RR~~ 190 (221)
T cd02522 125 ANLRS---R---LFGLPYGDQGLFIRRELFEELGGFPELPL---MEDVELVRRLRRRG-RPALLPSPVTTSA----RRWE 190 (221)
T ss_pred HHHHH---C---CCCCCCCCCCEEEEHHHHHHCCCCCCCCC---CCHHHHHHHHHHCC-CEEECCCEEEECH----HHHH
T ss_conf 88873---3---46767777053667999998499878675---54499999999739-9788396099877----7862
Q ss_pred CCCHHHHHH
Q ss_conf 689999999
Q gi|254780918|r 565 HEDPAKMIV 573 (623)
Q Consensus 565 ~~~~~k~~~ 573 (623)
.....|+..
T Consensus 191 ~~g~~k~~~ 199 (221)
T cd02522 191 RNGWLRTTL 199 (221)
T ss_pred CCCCHHHHH
T ss_conf 689999999
No 14
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=100.00 E-value=2e-38 Score=253.72 Aligned_cols=209 Identities=19% Similarity=0.298 Sum_probs=150.1
Q ss_pred CCEEEEEECCCCH-HHHHHHHHHHHHCCCCCC--EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 8169999537745-569999987642079751--5799714899816899999998630888279975788873388989
Q gi|254780918|r 324 PLVSIIIPTYNHH-HLLKICLESIYHKTTYSS--FEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINN 400 (623)
Q Consensus 324 P~VSIIIp~~n~~-~~l~~cl~Sl~~~t~y~~--~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N 400 (623)
|+||||||+||+. +.+++||+||++|+ ||+ +|||||||+|+| +|.++++++..... +.++....+.++.+++.|
T Consensus 1 P~VsViIPayNE~~~~i~~~l~sl~~q~-YP~~~~eIiVvdD~std-~t~~~~~~~~~~~~-~~~~~~~~~~g~Ka~alN 77 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAID-YPHDKLRVYVLDDGRRP-ELRALAAELGVEYG-YRYLTRPDNRHAKAGNLN 77 (234)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHCC-CCCCCEEEEEEECCCCH-HHHHHHHHHCCCCE-EEEEECCCCCCCHHHHHH
T ss_conf 9399999838997899999999999679-99982899999898987-88988888456643-688874889997699999
Q ss_pred HHHHHCCCCEEEEECCCCEEECHHHHHHHHHHHC-CCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCC
Q ss_conf 8786148974744058827828168899887742-898169953766467675677870441325406786566432256
Q gi|254780918|r 401 NATLHAKGQYFCFLNNDTEVINGQWLSEMMGIAS-QPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHH 479 (623)
Q Consensus 401 ~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~-~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~ 479 (623)
.|++.++||||+|+|+|+. .+|+||++|+.+++ +|+||+|++...+... +....... .........+
T Consensus 78 ~g~~~a~gd~v~~~DaD~~-~~~~~L~~~~~~~~~~~~v~~v~~~~~~~~~-----~~~~~~~~------~~~~~~~~~~ 145 (234)
T cd06421 78 NALAHTTGDFVAILDADHV-PTPDFLRRTLGYFLDDPKVALVQTPQFFYNP-----DPFDWLAD------GAPNEQELFY 145 (234)
T ss_pred HHHHHCCCCEEEEECCCCC-CCHHHHHHHHHHHHHCCCEEEEECCEEEECC-----CCCCHHHH------HHHHHHHHHH
T ss_conf 9999778999999889877-0876999999999869975899535677348-----83328999------9999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEECC
Q ss_conf 5555764422223344444111011020438888987179997687632316889999997498199847549995177
Q gi|254780918|r 480 KARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHDES 558 (623)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~es 558 (623)
... ..+. ........+|+|+++||++|+++||||+..+ .||.||++|+.++||+++|.|++.++|...
T Consensus 146 ~~~--~~~~------~~~~~~~~~G~~~~~rr~~l~~vGgf~~~~~---~ED~dl~~rl~~~G~k~~y~p~a~~~~~~p 213 (234)
T cd06421 146 GVI--QPGR------DRWGAAFCCGSGAVVRREALDEIGGFPTDSV---TEDLATSLRLHAKGWRSVYVPEPLAAGLAP 213 (234)
T ss_pred HHH--HHHH------HCCCCEEECCCHHHHHHHHHHHCCCCCCCCC---CHHHHHHHHHHHCCCEEEEECCCEEEEECC
T ss_conf 999--9887------3388425535506788999998189999997---659999999997699799936867986789
No 15
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=100.00 E-value=5.4e-38 Score=251.04 Aligned_cols=199 Identities=26% Similarity=0.399 Sum_probs=151.6
Q ss_pred CCEEEEEECCCC-HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 816999953774-5569999987642079751579971489981689999999863088827997578887338898987
Q gi|254780918|r 324 PLVSIIIPTYNH-HHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNA 402 (623)
Q Consensus 324 P~VSIIIp~~n~-~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g 402 (623)
|+||||||+||. .+.|++||+||++|| |+++|||||||+|+|+++.++++.+....++++++.... +.|.+++.|.|
T Consensus 1 P~vSViip~yN~~~~~l~~~l~Si~~Qt-~~~~EiIvvDd~StD~~~~~~~~~~~~~~~~i~~~~~~~-n~G~~~a~N~g 78 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQT-YPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFREE-NGGISAATNSA 78 (202)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHH
T ss_conf 9399999748896699999999998378-998799999899894789999999885188520012678-87899998864
Q ss_pred HHHCCCCEEEEECCCCEEECHHHHHHHHHHH-CCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCC
Q ss_conf 8614897474405882782816889988774-289816995376646767567787044132540678656643225655
Q gi|254780918|r 403 TLHAKGQYFCFLNNDTEVINGQWLSEMMGIA-SQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKA 481 (623)
Q Consensus 403 ~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~-~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~ 481 (623)
++.|+||||+|||+|.. +.|+||+.++..+ ..|++++|.+.. .....++.. .. .. .
T Consensus 79 i~~a~geyi~flD~DD~-~~p~~l~~~~~~~~~~~~~~~v~~~~-----~~~~~~~~~------~~-------~~--~-- 135 (202)
T cd04184 79 LELATGEFVALLDHDDE-LAPHALYEVVKALNEHPDADLIYSDE-----DKIDEGGKR------SE-------PF--F-- 135 (202)
T ss_pred HHCCCCCEEEECCCCCE-ECHHHHHHHHHHHHHCCCCCEEECCH-----HEECCCCCE------EE-------CC--C--
T ss_conf 51368766773277855-28439999999998689935997371-----168679978------72-------12--4--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEEC
Q ss_conf 5576442222334444411101102043888898717999768763231688999999749819984754999517
Q gi|254780918|r 482 RCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHDE 557 (623)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~e 557 (623)
.+++.. ......++ .++++++||++|+++|||||. +. ..||.|||+|+.++|+++++.|.+ ++|+-
T Consensus 136 ---~~~~~~-~~~~~~~~---~~~~~~~rr~~~~~iGgfde~-~~-~~eD~dl~lRl~~~g~ki~~ip~~-Ly~yR 201 (202)
T cd04184 136 ---KPDWSP-DLLLSQNY---IGHLLVYRRSLVRQVGGFREG-FE-GAQDYDLVLRVSEHTDRIAHIPRV-LYHWR 201 (202)
T ss_pred ---CCCCCH-HHHHHCCC---CCHHHHHHHHHHHHHCCCCCC-CC-CCHHHHHHHHHHHHCCEEEEECHH-HEEEC
T ss_conf ---787798-89853476---320366689999995898988-88-316999999999819979992808-84968
No 16
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=100.00 E-value=1.4e-37 Score=248.41 Aligned_cols=209 Identities=23% Similarity=0.302 Sum_probs=150.7
Q ss_pred EEEEECCCCH-HHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCC-CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 9999537745-56999998764207975157997148998168999999986308-882799757888733889898786
Q gi|254780918|r 327 SIIIPTYNHH-HLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKY-PNLRVITDNTHPFNYSRINNNATL 404 (623)
Q Consensus 327 SIIIp~~n~~-~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~-~~~~~i~~~~~~~n~s~~~N~g~~ 404 (623)
|||||+||.. +.+++||+||.++ +||++|||||||+|+|+.+.+.++.+..+. ++++++...+.+++-+.+.|.|++
T Consensus 1 SIiIPayNE~~~vi~~~l~sl~~~-~Yp~~eIiVvdd~stD~t~~~~v~~~~~~~~~~~~~~~~~~~~g~K~~alN~~l~ 79 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAAL-DYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALE 79 (236)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 989835899289999999999957-9999879999892998158999999998729967999948889970999999999
Q ss_pred HCCC--CEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCC
Q ss_conf 1489--74744058827828168899887742898169953766467675677870441325406786566432256555
Q gi|254780918|r 405 HAKG--QYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKAR 482 (623)
Q Consensus 405 ~a~g--eyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~ 482 (623)
++.| |+++++|+|+. ++|+||++|+..+++|++|+|++...+.. .+..+...+. ...+... ..
T Consensus 80 ~~~~~~e~i~~~DaD~~-~~pd~L~~~v~~f~~p~vg~v~~~~~~~~-----~~~~~~~~~~--------~~~~~~~-~~ 144 (236)
T cd06435 80 RTAPDAEIIAVIDADYQ-VEPDWLKRLVPIFDDPRVGFVQAPQDYRD-----GEESLFKRMC--------YAEYKGF-FD 144 (236)
T ss_pred HCCCCCEEEEEECCCCC-CCHHHHHHHHHHHCCCCEEEEECCEECCC-----CCCCHHHHHH--------HHHHHHH-HH
T ss_conf 64798549999768877-78689999998604987689955613148-----7767999999--------9999999-99
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEECCCC
Q ss_conf 576442222334444411101102043888898717999768763231688999999749819984754999517733
Q gi|254780918|r 483 CSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHDESRT 560 (623)
Q Consensus 483 ~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~es~s 560 (623)
...+.. ...+....+|+|+++||++|+++|||||..+ -||.|||+|+.++||+++|.|++.++|....|
T Consensus 145 ~~~~~~------~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~~~---~ED~dl~~rl~~~G~~~~y~p~a~~~~~~p~t 213 (236)
T cd06435 145 IGMVSR------NERNAIIQHGTMCLIRRSALDDVGGWDEWCI---TEDSELGLRMHEAGYIGVYVAQSYGHGLIPDT 213 (236)
T ss_pred HHHHHH------HCCCCEEECCEEEEEEHHHHHHHCCCCCCCC---CCHHHHHHHHHHCCCEEEECCCCEEEEECCCC
T ss_conf 889888------5389747666468878899998389887775---77799999999859979972577798657788
No 17
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=100.00 E-value=1.6e-37 Score=248.07 Aligned_cols=208 Identities=23% Similarity=0.291 Sum_probs=153.6
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCC--EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHH
Q ss_conf 788888169999537745569999987642079751--579971489981689999999863088827997578887338
Q gi|254780918|r 319 IPNPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSS--FEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYS 396 (623)
Q Consensus 319 ~~~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~--~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s 396 (623)
-|...|+||||||+||+.+.+.+||+||.+|+ ||+ +|||||||+|+| .|.+.++.+.. +.++++... .+.|.+
T Consensus 24 ~~~~~P~VsViIP~yNE~~~i~~~l~sl~~q~-Yp~~~~eVIvvdD~StD-~T~ei~~~~~~--~~~~v~~~~-~n~Gk~ 98 (251)
T cd06439 24 DPAYLPTVTIIIPAYNEEAVIEAKLENLLALD-YPRDRLEIIVVSDGSTD-GTAEIAREYAD--KGVKLLRFP-ERRGKA 98 (251)
T ss_pred CCCCCCEEEEEEEECCCHHHHHHHHHHHHHCC-CCCCCEEEEEEECCCCH-HHHHHHHHHHC--CCCEEECCC-CCCCHH
T ss_conf 98899935999973898899999999999669-99887899999799981-49999999745--585043167-776799
Q ss_pred HHHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCC
Q ss_conf 89898786148974744058827828168899887742898169953766467675677870441325406786566432
Q gi|254780918|r 397 RINNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKN 476 (623)
Q Consensus 397 ~~~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~ 476 (623)
+++|.|+++|+||||+|+|+|+. ++|+||++|+..+.+|+||+|++++.+...... + .+. .. ..
T Consensus 99 ~AlN~gi~~a~gd~i~~lDaD~~-~~~~~l~~l~~~f~d~~vg~V~g~~~~~~~~~~------~-~~~-----~~---y~ 162 (251)
T cd06439 99 AALNRALALATGEIVVFTDANAL-LDPDALRLLVRHFADPSVGAVSGELVIVDGGGS------G-SGE-----GL---YW 162 (251)
T ss_pred HHHHHHHHHCCCCEEEECCCCCC-CCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCH------H-HHH-----HH---HH
T ss_conf 99999998767898983378765-187699999998609983899714870489803------7-899-----99---99
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEE
Q ss_conf 25655557644222233444441110110204388889871799976876323168899999974981998475499951
Q gi|254780918|r 477 KHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHD 556 (623)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~ 556 (623)
..... . .........+...+|+|+++||++|+ ||++.. ..||.|||+|+.++||+++|+|.+.++|.
T Consensus 163 ~~~~~---~----~~~~s~~~~~~~~~G~~~~~Rr~~~~---~~~~~~---~~ED~dl~~rl~~~G~ki~y~p~a~~~~~ 229 (251)
T cd06439 163 KYENW---L----KRAESRLGSTVGANGAIYAIRRELFR---PLPADT---INDDFVLPLRIARQGYRVVYEPDAVAYEE 229 (251)
T ss_pred HHHHH---H----HHHHHHCCCEEEECCHHHHHHHHHHC---CCCCCC---CCCHHHHHHHHHHCCCEEEECCCCEEEEE
T ss_conf 99999---9----99998549924886689995899980---978777---65389999999986997997488589987
Q ss_pred CCCC
Q ss_conf 7733
Q gi|254780918|r 557 ESRT 560 (623)
Q Consensus 557 es~s 560 (623)
...|
T Consensus 230 ~p~t 233 (251)
T cd06439 230 VAED 233 (251)
T ss_pred CCCC
T ss_conf 8899
No 18
>PRK11204 N-glycosyltransferase PgaC; Provisional
Probab=100.00 E-value=1.6e-37 Score=248.09 Aligned_cols=209 Identities=23% Similarity=0.324 Sum_probs=144.2
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 88881699995377455699999876420797515799714899816899999998630888279975788873388989
Q gi|254780918|r 321 NPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINN 400 (623)
Q Consensus 321 ~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N 400 (623)
+.-|.|||+||+||+.+.+++||+|+.++ +||++|||||||||+| +|.+.++++..++++++++....+. |.|.+.|
T Consensus 51 ~~~P~VsVlIPayNEe~~I~~tI~sll~~-~YP~~eIiVVdDgStD-~T~~i~~~~~~~~p~~~vi~~~~n~-GKa~ALN 127 (421)
T PRK11204 51 KEYPLVSILVPCYNEGENVEETISAALAL-RYPNYEVIAINDGSSD-NTGEILDRLAAEDPRLRVIHLAENQ-GKAIALN 127 (421)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHC-CCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCEEEEECCCCC-CHHHHHH
T ss_conf 89994699984799789999999999958-9998669999899974-0899999997068968999769998-8999999
Q ss_pred HHHHHCCCCEEEEECCCCEEECHHHHHHHHHHH-CCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCC
Q ss_conf 878614897474405882782816889988774-2898169953766467675677870441325406786566432256
Q gi|254780918|r 401 NATLHAKGQYFCFLNNDTEVINGQWLSEMMGIA-SQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHH 479 (623)
Q Consensus 401 ~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~-~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~ 479 (623)
.|++.++|||++++|+|+. .+||+|++|+.++ .+|+||+|++..-..+.... -+++|.. .+.
T Consensus 128 ~gl~~a~ge~Vv~~DAD~~-~~~d~L~~~v~~f~~dp~VgaV~g~~~v~n~~tl--L~r~q~~------------Ey~-- 190 (421)
T PRK11204 128 TGAAAARSEYLVCIDGDAL-LDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRSTL--LGRIQVG------------EFS-- 190 (421)
T ss_pred HHHHHCCCCEEEEECCCCC-CCHHHHHHHHHHHHHCCCCEEEECCCEEECCCCH--HHHHHHH------------HHH--
T ss_conf 9998437898999899871-4867999999999719864388378543043338--8875799------------999--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEE
Q ss_conf 55557644222233444441110110204388889871799976876323168899999974981998475499951
Q gi|254780918|r 480 KARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHD 556 (623)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~ 556 (623)
..-+...........+..++|+|.++||++++++||||+... -||+|+++|+..+||+++|.|+|.++-.
T Consensus 191 ----~~~~~~kr~q~~~g~~~~vsG~~~~fRrsaL~~vGGw~~~tl---tED~dls~rl~~~G~ri~y~p~A~~~~e 260 (421)
T PRK11204 191 ----SIIGLIKRAQRVYGRVFTVSGVITAFRKSALADVGYWSTDMI---TEDIDISWKLQLRGWDIRYEPRALCWIL 260 (421)
T ss_pred ----HHHHHHHHHHHHHCCCEEECCEEEEEHHHHHHHHCCCCCCCH---HHHHHHHHHHHHCCCEEEECCCCEEEEE
T ss_conf ----999999999998388145277212204999998289799852---2479999999987996995365779721
No 19
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=100.00 E-value=1.2e-36 Score=242.68 Aligned_cols=179 Identities=27% Similarity=0.446 Sum_probs=141.4
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 999537745569999987642079751579971489981689999999863088-8279975788873388989878614
Q gi|254780918|r 328 IIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYP-NLRVITDNTHPFNYSRINNNATLHA 406 (623)
Q Consensus 328 IIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~-~~~~i~~~~~~~n~s~~~N~g~~~a 406 (623)
||||+||+.+.|++||+||.+|| ++++|||||||+|+| +|.++++++....+ .++.+.....+++.++++|.|++.|
T Consensus 1 VIIptyN~~~~L~~~L~Sl~~Qt-~~~~EIIvvDd~StD-~t~~~~~~~~~~~~~~i~~~~~~~~g~~~~~arN~gi~~a 78 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLNQS-ILPFEVIIADDGSTE-ETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAA 78 (182)
T ss_pred CEEEECCCHHHHHHHHHHHHHCC-CCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf 49987798899999999998379-999589999799961-4899999998518874100010056726899999999855
Q ss_pred CCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 89747440588278281688998877428981699537664676756778704413254067865664322565555764
Q gi|254780918|r 407 KGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSVP 486 (623)
Q Consensus 407 ~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~~~~ 486 (623)
+||||+|+|+|+. ..|+||+.++..+ .+++.+.|++.... +. .. .
T Consensus 79 ~g~~i~flD~D~~-~~~~~i~~~~~~~-~~~~~~~g~~~~~~------~~--------------------------~~-~ 123 (182)
T cd06420 79 KGDYLIFIDGDCI-PHPDFIADHIELA-EPGVFLSGSRVLLN------EK--------------------------LT-E 123 (182)
T ss_pred CCCEEEEECCCCC-CCCHHHHHHHHHH-CCCEEEECCEEEEC------CC--------------------------CC-C
T ss_conf 8872888789832-7910999999970-89908986168717------53--------------------------45-2
Q ss_pred CCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCE-EEEEE
Q ss_conf 42222334444411101102043888898717999768763231688999999749819984754-99951
Q gi|254780918|r 487 NYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHA-DLYHD 556 (623)
Q Consensus 487 ~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a-~v~H~ 556 (623)
..+.|++|+++|+.|+++|||||.+..+++||.|||+|++++|+++.++|.+ .+||.
T Consensus 124 -------------~~~~~~~~~~~r~~~~~vGgfde~~~~~g~ED~Dl~~Rl~~~G~k~~~~~~~~~~yH~ 181 (182)
T cd06420 124 -------------RGIRGCNMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGIKFRKLKFAAIVFHL 181 (182)
T ss_pred -------------CCCCEEEEEEEHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCEEEEEC
T ss_conf -------------6402448999999999858997002789977999999999829999961687699917
No 20
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=100.00 E-value=5.3e-36 Score=238.81 Aligned_cols=177 Identities=24% Similarity=0.323 Sum_probs=146.5
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCC--EEEEECCCCCCHHH--HH
Q ss_conf 816999953774556999998764207975157997148998168999999986308882--79975788873388--98
Q gi|254780918|r 324 PLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNL--RVITDNTHPFNYSR--IN 399 (623)
Q Consensus 324 P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~--~~i~~~~~~~n~s~--~~ 399 (623)
|+||||||+||....+.+||+||++| +||++|||||||+|+|+ |.+.++++.++++++ +++......+.-.+ +.
T Consensus 1 P~VSIivP~~nee~~i~~~l~sll~q-dYp~~Eiivv~d~s~D~-t~~i~~~~~~~~p~~~~~~~~~~~~~g~~~K~~~l 78 (196)
T cd02520 1 PGVSILKPLCGVDPNLYENLESFFQQ-DYPKYEILFCVQDEDDP-AIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNL 78 (196)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHC-CCCCCEEEEEECCCCCC-HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHH
T ss_conf 96799996899927799999999966-89980899997899997-89999998742877665999768887844899999
Q ss_pred HHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCC
Q ss_conf 98786148974744058827828168899887742898169953766467675677870441325406786566432256
Q gi|254780918|r 400 NNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHH 479 (623)
Q Consensus 400 N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~ 479 (623)
|.|+++|+||+|+|+|+|+.+ .|+||.+|+.++.+|+||+|++.
T Consensus 79 ~~g~~~a~gdii~~~DaD~~~-~~~~L~~lv~~f~~p~vg~V~~~----------------------------------- 122 (196)
T cd02520 79 IKGYEEARYDILVISDSDISV-PPDYLRRMVAPLMDPGVGLVTCL----------------------------------- 122 (196)
T ss_pred HHHHHHCCCCEEEEECCCCCC-CHHHHHHHHHHHCCCCCCEEECC-----------------------------------
T ss_conf 999996458999998899772-95599999998569994679647-----------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEECCC
Q ss_conf 55557644222233444441110110204388889871799976876323168899999974981998475499951773
Q gi|254780918|r 480 KARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHDESR 559 (623)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~es~ 559 (623)
.++|++|++||++|+++||||+- .....||.||++|++++||+++|.|.+.+++....
T Consensus 123 ---------------------~~~G~~~~~Rr~~l~~~Gg~~~~-~~~l~ED~~l~~~l~~~G~ri~~~p~a~~~~~~~~ 180 (196)
T cd02520 123 ---------------------CAFGKSMALRREVLDAIGGFEAF-ADYLAEDYFLGKLIWRLGYRVVLSPYVVMQPLGST 180 (196)
T ss_pred ---------------------CCCCCEEEEEHHHHHHCCCHHHH-CCCCHHHHHHHHHHHHCCCEEEEECCCEEEECCCC
T ss_conf ---------------------76785567889999874994453-45417999999999985997998354478502798
Q ss_pred C
Q ss_conf 3
Q gi|254780918|r 560 T 560 (623)
Q Consensus 560 s 560 (623)
|
T Consensus 181 t 181 (196)
T cd02520 181 S 181 (196)
T ss_pred C
T ss_conf 9
No 21
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=100.00 E-value=1.4e-36 Score=242.41 Aligned_cols=217 Identities=20% Similarity=0.338 Sum_probs=125.2
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCC--EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH
Q ss_conf 88888169999537745569999987642079751--5799714899816899999998630888279975788873388
Q gi|254780918|r 320 PNPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSS--FEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSR 397 (623)
Q Consensus 320 ~~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~--~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~ 397 (623)
++.-|.||||||+||+.+.+.+||+|+.++ +||+ +|||||||||+| +|.+.+++..+++|++.++.... +.|-|+
T Consensus 45 ~~~lP~VSViIPayNEe~~I~~~i~Sl~~~-dYP~~~lEIIvVdDgStD-~T~ei~~~~~~~~p~~~v~~~~~-n~GKa~ 121 (439)
T TIGR03111 45 IGKLPDITIIIPVYNSEDTLFNCIESIYNQ-TYPIELIDIILANNQSTD-DSFQVFCRAQNEFPGLSLRYMNS-DQGKAK 121 (439)
T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHC-CCCCCCEEEEEEECCCCH-HHHHHHHHHHHHCCCEEEEECCC-CCCHHH
T ss_conf 667997699993587388999999999967-999985599999789951-79999999886589839997689-898599
Q ss_pred HHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHH-CCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCC
Q ss_conf 989878614897474405882782816889988774-2898169953766467675677870441325406786566432
Q gi|254780918|r 398 INNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIA-SQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKN 476 (623)
Q Consensus 398 ~~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~-~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~ 476 (623)
+.|.|+..|+|||++++|+|+. ++||+|.+|+.++ .+|+||||++.++..........+ ..+ .......
T Consensus 122 ALN~gl~~A~Ge~iv~~DADt~-le~daL~~lv~~F~~dp~V~Av~G~V~~~~~~i~~~~n------~~~---~ll~~~q 191 (439)
T TIGR03111 122 ALNAAIYNSIGKYIIHIDSDGK-LHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKG------RFL---KLIRRCE 191 (439)
T ss_pred HHHHHHHHCCCCEEEEEECCCC-CCHHHHHHHHHHHHHCCCEEEEECEEEECCCHHCCCCC------HHH---HHHHHHH
T ss_conf 9999999778898999808988-68569999999872099668996637405421013222------787---8999999
Q ss_pred CCCCCCCCCCCCC-CCC-CCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHH-CCCEEEECCCEEE
Q ss_conf 2565555764422-223-344444111011020438888987179997687632316889999997-4981998475499
Q gi|254780918|r 477 KHHKARCSVPNYQ-AFA-MHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILE-AGYRNVWTPHADL 553 (623)
Q Consensus 477 ~~~~~~~~~~~~~-~~~-~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~-~G~r~v~~P~a~v 553 (623)
..+ ...+.. +.. ......+..++||+.++||+++.++||||+...+ ||+|+.+|++. .|+++.|+|+|..
T Consensus 192 ~~E----Y~~~f~~~R~~~s~~~~i~~isGa~~afRr~aL~~vGG~d~~tlt---ED~DLT~ri~~~~g~kI~f~p~Av~ 264 (439)
T TIGR03111 192 YFE----YAQAFLAGRNFESQVNSLFTLSGAFSAFRRETILKTQLYNSETVG---EDTDMTFQIRELLDGKVYLCENAIF 264 (439)
T ss_pred HHH----HHHHHHHHHHHHHHCCCEEEECCCHHHEEHHHHHHCCCCCCCCCC---HHHHHHHHHHHHCCCEEEECCCCEE
T ss_conf 999----999999989999973997898683121029999980998999850---7499999999976983997667579
Q ss_pred EEE
Q ss_conf 951
Q gi|254780918|r 554 YHD 556 (623)
Q Consensus 554 ~H~ 556 (623)
+-.
T Consensus 265 yte 267 (439)
T TIGR03111 265 YVD 267 (439)
T ss_pred EEE
T ss_conf 986
No 22
>PRK10063 predicted glycosyl transferase; Provisional
Probab=100.00 E-value=2.4e-36 Score=240.96 Aligned_cols=203 Identities=16% Similarity=0.220 Sum_probs=159.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCC---CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 78999747589888999999999828899---748999877578067999999988757988999808888564899999
Q gi|254780918|r 68 LISVIMPVYKIKKEWLEMAIESVRSQIYS---HWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSA 144 (623)
Q Consensus 68 ~iSIiip~yn~~~~~L~~~i~Si~~Qty~---~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~ 144 (623)
+||||+|+||. +++|++||+||.+|+++ ++|.||||++|+|. |.++++++... .++++ .++.+.|++.|+|.|
T Consensus 2 ~iSIITv~~N~-~~~l~~Tl~Sv~~~~~~~~~~~E~IIIDGgStDg-T~~ii~~~~~~-~~~~~-iSEpD~GIYdAmNKG 77 (248)
T PRK10063 2 LLSVVTVAFRN-LEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDG-TREYLENLNGI-FNLRF-VSEPDNGIYDAMNKG 77 (248)
T ss_pred EEEEEEEECCC-HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC-HHHHHHHCCCC-CCEEE-EEECCCCCHHHHHHH
T ss_conf 69999994749-8999999999999861878986999997939611-79999970666-66799-993898808898851
Q ss_pred HHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCHHHHCCCCCCCHHHH-HH
Q ss_conf 99659989999769875273207999999873247554202220675898365422566789667414785431457-68
Q gi|254780918|r 145 AQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYDFNPELFHVHNMITHLGV-YR 223 (623)
Q Consensus 145 l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~~~~~~l~s~nyi~~~~~-~r 223 (623)
++.|+||||.||++||.+.|+.+..+.. +..+++.+++|+|......++.......+|.| .+...++++|..+ +|
T Consensus 78 I~~A~Gd~I~FLNsdD~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~r~~~~~~---~~~~~~p~~Hqa~f~r 153 (248)
T PRK10063 78 IAMAQGKFALFLNSGDIFHQDAALFVRQ-LKRQKDNAMITGDALLDFGDGHKIKRKAKPGW---YIYHSLPASHQAIFFP 153 (248)
T ss_pred HHHCCCCEEEEECCCCCCCCCHHHHHHH-HHHCCCCEEEEEEEEEECCCCCEEEECCCCHH---HHCCCCCCCCCCEEEE
T ss_conf 9877888899983886648476999999-87179986999437998189868986037815---6338999998887888
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCCCCHH
Q ss_conf 9999971887898773027413678864248752200684227995338853388013
Q gi|254780918|r 224 TETFKKIGGFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVLYHWRMHDNSTAQKIGN 281 (623)
Q Consensus 224 r~~~~~iGgf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vLy~~R~~~~s~~~~~~~ 281 (623)
|+++++ ++||+.|..++||||++|+... ..++.|||++|..+|..+-|+..+...
T Consensus 154 r~~~~~-~~fD~~y~iaaDydl~lRl~~~--g~~~~yl~~vl~~~~~GG~S~~n~~~~ 208 (248)
T PRK10063 154 VSGLKK-WRYDLEYKVSSDYALAARLYKA--GYAFKKLNGLVSEFSMGGVSTTNNMEL 208 (248)
T ss_pred HHHHHC-CCCCCCCCCHHHHHHHHHHHHC--CCCEEECCCEEEEECCCCCCCCCHHHH
T ss_conf 789627-8899988742679999999976--997897481359802998828766999
No 23
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=100.00 E-value=2.9e-35 Score=234.27 Aligned_cols=208 Identities=18% Similarity=0.270 Sum_probs=147.2
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCCCCC--EEEEEECCCCCCHHHHHHHHHHHH----CCCCCEEEEECCCCCCHHH
Q ss_conf 8169999537745569999987642079751--579971489981689999999863----0888279975788873388
Q gi|254780918|r 324 PLVSIIIPTYNHHHLLKICLESIYHKTTYSS--FEVIIIDNLSDDSKTFLYLQKIQK----KYPNLRVITDNTHPFNYSR 397 (623)
Q Consensus 324 P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~--~EiivVdn~S~d~~t~~~l~~~~~----~~~~~~~i~~~~~~~n~s~ 397 (623)
|+||||||+||+.+.+.+||+||.+|+ ||. +||+|+|| |+|+ |.+.+.++.. ....++.+....+.++-+.
T Consensus 1 P~VSViIPa~NE~~~I~~~l~sl~~q~-YP~~~~~I~VvDd-stD~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Ka~ 77 (232)
T cd06437 1 PMVTVQLPVFNEKYVVERLIEAACALD-YPKDRLEIQVLDD-STDE-TVRLAREIVEEYAAQGVNIKHVRRADRTGYKAG 77 (232)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCC-CCCCEEEEEEEEC-CCCH-HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf 939999955898899999999999679-9998089999979-9966-999999999766641996899836988886699
Q ss_pred HHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCC-CCCC
Q ss_conf 989878614897474405882782816889988774289816995376646767567787044132540678656-6432
Q gi|254780918|r 398 INNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIA-GHKN 476 (623)
Q Consensus 398 ~~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~-~~~~ 476 (623)
+.|.|+++++||||+++|+|+. .+|+||++|+.++.+|++|+|+++..+... +.+.+ ..+.... ...+
T Consensus 78 aln~gl~~a~gd~i~~~DaD~~-~~~d~L~~~~~~f~~~~~g~v~~~~~~~n~----~~~~~------~~~~~~~~~~~~ 146 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFV-PPPDFLQKTPPYFADPKLGFVQTRWGHINA----NYSLL------TRVQAMSLDYHF 146 (232)
T ss_pred HHHHHHHHCCCCEEEEECCCCC-CCHHHHHHHHHHHCCCCEEEEECCCCCCCC----CCCHH------HHHHHHHHHHHH
T ss_conf 9999999778988999776447-384799999998319985999666432588----86799------999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEE
Q ss_conf 25655557644222233444441110110204388889871799976876323168899999974981998475499951
Q gi|254780918|r 477 KHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHD 556 (623)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~ 556 (623)
.... .+ ......+..++|+|+++||++++++||||+..+ .||.||++|+..+||+++|.|++.++|.
T Consensus 147 ~~~~-----~~-----~~~~~~~~~~~G~~~~~Rr~~l~~~Gg~~~~~~---~ED~~l~~r~~~~G~ri~~~~~a~~~~~ 213 (232)
T cd06437 147 TIEQ-----VA-----RSSTGLFFNFNGTAGVWRKECIEDAGGWNHDTL---TEDLDLSYRAQLKGWKFVYLDDVVVPAE 213 (232)
T ss_pred HHHH-----HH-----HHHCCCCEECCCEEEEEEHHHHHHHCCCCCCCC---CHHHHHHHHHHHCCCEEEEECCCEEEEE
T ss_conf 9999-----99-----882599341265158775999998579988661---0189999999987998998068779767
Q ss_pred CC
Q ss_conf 77
Q gi|254780918|r 557 ES 558 (623)
Q Consensus 557 es 558 (623)
.-
T Consensus 214 ~P 215 (232)
T cd06437 214 LP 215 (232)
T ss_pred CC
T ss_conf 77
No 24
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=100.00 E-value=7.6e-35 Score=231.72 Aligned_cols=200 Identities=22% Similarity=0.335 Sum_probs=148.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCC--CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 78999747589888999999999828899--7489998775780679999999887579889998088885648999999
Q gi|254780918|r 68 LISVIMPVYKIKKEWLEMAIESVRSQIYS--HWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAA 145 (623)
Q Consensus 68 ~iSIiip~yn~~~~~L~~~i~Si~~Qty~--~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l 145 (623)
+||||||+||. +++|++||+||.+|||| ++|||||||+|+| .+.++++++...+++++++.++. .|.+.|+|.|+
T Consensus 1 lVSViIp~yN~-~~~l~~~l~Sl~~q~yp~~~~EVIvVDd~S~D-~t~~~~~~~~~~~~~i~~~~~~~-~~~~~a~N~gi 77 (249)
T cd02525 1 FVSIIIPVRNE-EKYIEELLESLLNQSYPKDLIEIIVVDGGSTD-GTREIVQEYAAKDPRIRLIDNPK-RIQSAGLNIGI 77 (249)
T ss_pred CEEEEECCCCC-HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC-CHHHHHHHHHHCCCCEEECCCCC-CCHHHHHHHHH
T ss_conf 98999935697-89999999999846899998899999895961-56999999974077132113555-65899998989
Q ss_pred HHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCE-E-----EECCCC---CCCHHHHCCCCC-
Q ss_conf 965998999976987527320799999987324755420222067589836-5-----422566---789667414785-
Q gi|254780918|r 146 QLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIR-S-----GPYFKY---DFNPELFHVHNM- 215 (623)
Q Consensus 146 ~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~-~-----~p~fkp---~~~~~~l~s~ny- 215 (623)
+.|+||||+|+|+|+++.|++|+.+++.+.+ ++.+.+.+.......+... . ...+.. .+... .....+
T Consensus 78 ~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~-~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 155 (249)
T cd02525 78 RNSRGDIIIRVDAHAVYPKDYILELVEALKR-TGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGG-AVKIGYV 155 (249)
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHC-CCCEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCEE
T ss_conf 9668776884147765695699999999877-8971999888506897277777887626432352000132-2458454
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEEEEECCCCC
Q ss_conf -431457689999971887898773027413678864248752200684227995338853
Q gi|254780918|r 216 -ITHLGVYRTETFKKIGGFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVLYHWRMHDNST 275 (623)
Q Consensus 216 -i~~~~~~rr~~~~~iGgf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vLy~~R~~~~s~ 275 (623)
.+...+|||++++++||||+.|..++|+||++|+..++ .+|.+.|+...+++ ++.|.
T Consensus 156 ~~~~~~~~rr~~~~~iGgfde~~~~~ED~dl~~R~~~~G--~ki~~~p~a~v~h~-~~~s~ 213 (249)
T cd02525 156 DTVHHGAYRREVFEKVGGFDESLVRNEDAELNYRLRKAG--YKIWLSPDIRVYYY-PRSTL 213 (249)
T ss_pred CCEEEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC--CEEEEECCEEEEEE-CCCCH
T ss_conf 213579888889997389987778238999999999769--97999188799998-99999
No 25
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=100.00 E-value=7.9e-35 Score=231.62 Aligned_cols=188 Identities=19% Similarity=0.201 Sum_probs=137.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 89997475898889999999998288997489998775780679999999887579889998088885648999999965
Q gi|254780918|r 69 ISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQLA 148 (623)
Q Consensus 69 iSIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l~~a 148 (623)
||||||+||. +++|++||+||++|||+++|+|||||+|+| .|.++++++. ++++ +.|.|.+.|+|.|++.|
T Consensus 1 VSVIIP~yNe-~~~l~~~L~Sl~~q~~~~~EvIVVDdgStD-~T~~i~~~~~-----~~~~--~~~~G~a~a~N~G~~~A 71 (221)
T cd02522 1 LSIIIPTLNE-AENLPRLLASLRRLNPLPLEIIVVDGGSTD-GTVAIARSAG-----VVVI--SSPKGRARQMNAGAAAA 71 (221)
T ss_pred CEEEEEECCC-HHHHHHHHHHHHCCCCCCEEEEEEECCCCC-CHHHHHHHHC-----CEEE--ECCCCHHHHHHHHHHHC
T ss_conf 9899960788-889999999997578998389999896987-6499999725-----2255--26978799999999867
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEE-CCCCCCCHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 998999976987527320799999987324755420222067589836542-2566789667414785431457689999
Q gi|254780918|r 149 TSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGP-YFKYDFNPELFHVHNMITHLGVYRTETF 227 (623)
Q Consensus 149 ~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p-~fkp~~~~~~l~s~nyi~~~~~~rr~~~ 227 (623)
+||||+|||+|+.+.|++|..++..+..++... .... ..++..+..... .+.+.+ ...+...++-.+.+++||++|
T Consensus 72 ~Ge~i~flDaD~~~~~~~l~~l~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~~iRr~~f 148 (221)
T cd02522 72 RGDWLLFLHADTRLPPDWDAAIIETLRADGAVA-GAFR-LRFDDPGPRLRLLELGANL-RSRLFGLPYGDQGLFIRRELF 148 (221)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCE-EEEE-EEECCCCHHHHHHHHHHHH-HHCCCCCCCCCCCEEEEHHHH
T ss_conf 888799877523689069999999997399845-5556-8765996578899998888-733467677770536679999
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEE-EEEECC
Q ss_conf 971887898773027413678864248752200684227-995338
Q gi|254780918|r 228 KKIGGFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVLY-HWRMHD 272 (623)
Q Consensus 228 ~~iGgf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vLy-~~R~~~ 272 (623)
+++||||+.+- .||+||++|+..++ +++-+|+.++ +.|...
T Consensus 149 ~~vGGFde~~~-~ED~dL~~Rl~~~G---~~~~~p~~v~~s~RR~~ 190 (221)
T cd02522 149 EELGGFPELPL-MEDVELVRRLRRRG---RPALLPSPVTTSARRWE 190 (221)
T ss_pred HHCCCCCCCCC-CCHHHHHHHHHHCC---CEEECCCEEEECHHHHH
T ss_conf 98499878675-54499999999739---97883960998777862
No 26
>PRK11204 N-glycosyltransferase PgaC; Provisional
Probab=100.00 E-value=2.3e-34 Score=228.80 Aligned_cols=196 Identities=24% Similarity=0.360 Sum_probs=157.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
Q ss_conf 24589789997475898889999999998288997489998775780679999999887579889998088885648999
Q gi|254780918|r 63 WQNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASN 142 (623)
Q Consensus 63 ~~~~P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N 142 (623)
.+..|.|||+||+||. ++.+++||+|+++|+||++|+|+|||||+| +|.+++++++..+++++++..++|+|.+.|+|
T Consensus 50 ~~~~P~VsVlIPayNE-e~~I~~tI~sll~~~YP~~eIiVVdDgStD-~T~~i~~~~~~~~p~~~vi~~~~n~GKa~ALN 127 (421)
T PRK11204 50 LKEYPLVSILVPCYNE-GENVEETISAALALRYPNYEVIAINDGSSD-NTGEILDRLAAEDPRLRVIHLAENQGKAIALN 127 (421)
T ss_pred CCCCCCEEEEECCCCC-HHHHHHHHHHHHHCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
T ss_conf 8899946999847997-899999999999589998669999899974-08999999970689689997699988999999
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCC---CCC-H--------HHH
Q ss_conf 9999659989999769875273207999999873247554202220675898365422566---789-6--------674
Q gi|254780918|r 143 SAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKY---DFN-P--------ELF 210 (623)
Q Consensus 143 ~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp---~~~-~--------~~l 210 (623)
.|++.|+||||+.+|+|..++||+|..++..+.++|+++.+.++-...+.. ...-|- +++ . ..+
T Consensus 128 ~gl~~a~ge~Vv~~DAD~~~~~d~L~~~v~~f~~dp~VgaV~g~~~v~n~~----tlL~r~q~~Ey~~~~~~~kr~q~~~ 203 (421)
T PRK11204 128 TGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRS----TLLGRIQVGEFSSIIGLIKRAQRVY 203 (421)
T ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCEEECCC----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999843789899989987148679999999997198643883785430433----3888757999999999999999983
Q ss_pred CCCCCC-CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEE
Q ss_conf 147854-314576899999718878987730274136788642487522006842279
Q gi|254780918|r 211 HVHNMI-THLGVYRTETFKKIGGFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVLYH 267 (623)
Q Consensus 211 ~s~nyi-~~~~~~rr~~~~~iGgf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vLy~ 267 (623)
-..+.+ |.+.+|||++++++|||+++. ..||.|+.+|+..++ .++...|+.+.+
T Consensus 204 g~~~~vsG~~~~fRrsaL~~vGGw~~~t-ltED~dls~rl~~~G--~ri~y~p~A~~~ 258 (421)
T PRK11204 204 GRVFTVSGVITAFRKSALADVGYWSTDM-ITEDIDISWKLQLRG--WDIRYEPRALCW 258 (421)
T ss_pred CCCEEECCEEEEEHHHHHHHHCCCCCCC-HHHHHHHHHHHHHCC--CEEEECCCCEEE
T ss_conf 8814527721220499999828979985-224799999999879--969953657797
No 27
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=100.00 E-value=8.8e-34 Score=225.22 Aligned_cols=196 Identities=18% Similarity=0.230 Sum_probs=146.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCC--EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC-HHHHHHH
Q ss_conf 9789997475898889999999998288997--489998775780679999999887579889998088885-6489999
Q gi|254780918|r 67 PLISVIMPVYKIKKEWLEMAIESVRSQIYSH--WELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGH-ISAASNS 143 (623)
Q Consensus 67 P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~--~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g-~~~a~N~ 143 (623)
|+||||||+||.+.+.|++||+|+++|+||+ +|||||||+|+| .+.++++++..... ++++..+.|.| -++|+|.
T Consensus 1 P~VsViIPayNE~~~~i~~~l~sl~~q~YP~~~~eIiVvdD~std-~t~~~~~~~~~~~~-~~~~~~~~~~g~Ka~alN~ 78 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRP-ELRALAAELGVEYG-YRYLTRPDNRHAKAGNLNN 78 (234)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCH-HHHHHHHHHCCCCE-EEEEECCCCCCCHHHHHHH
T ss_conf 939999983899789999999999967999982899999898987-88988888456643-6888748899976999999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEE-CCCCCCCH---------HHHCCC
Q ss_conf 99965998999976987527320799999987324755420222067589836542-25667896---------674147
Q gi|254780918|r 144 AAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGP-YFKYDFNP---------ELFHVH 213 (623)
Q Consensus 144 ~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p-~fkp~~~~---------~~l~s~ 213 (623)
|++.|+||||+++|+|+++.|++|..++..+..+|+++++-+.............. .+...+.. ..+.+.
T Consensus 79 g~~~a~gd~v~~~DaD~~~~~~~L~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (234)
T cd06421 79 ALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAA 158 (234)
T ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99977899999988987708769999999998699758995356773488332899999999999999999887338842
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEE
Q ss_conf 854314576899999718878987730274136788642487522006842279
Q gi|254780918|r 214 NMITHLGVYRTETFKKIGGFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVLYH 267 (623)
Q Consensus 214 nyi~~~~~~rr~~~~~iGgf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vLy~ 267 (623)
.+.|...+|||++++++|||++.. .++|+||.+|+..++ .++..+|++..+
T Consensus 159 ~~~G~~~~~rr~~l~~vGgf~~~~-~~ED~dl~~rl~~~G--~k~~y~p~a~~~ 209 (234)
T cd06421 159 FCCGSGAVVRREALDEIGGFPTDS-VTEDLATSLRLHAKG--WRSVYVPEPLAA 209 (234)
T ss_pred EECCCHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHCC--CEEEEECCCEEE
T ss_conf 553550678899999818999999-765999999999769--979993686798
No 28
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=100.00 E-value=5.8e-34 Score=226.31 Aligned_cols=208 Identities=20% Similarity=0.261 Sum_probs=147.2
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCC--CEEEEEECCCCCCHHHHHHHHHHHHC-CCCCEEEEECCC-CCCHHHHHHHHH
Q ss_conf 99953774556999998764207975--15799714899816899999998630-888279975788-873388989878
Q gi|254780918|r 328 IIIPTYNHHHLLKICLESIYHKTTYS--SFEVIIIDNLSDDSKTFLYLQKIQKK-YPNLRVITDNTH-PFNYSRINNNAT 403 (623)
Q Consensus 328 IIIp~~n~~~~l~~cl~Sl~~~t~y~--~~EiivVdn~S~d~~t~~~l~~~~~~-~~~~~~i~~~~~-~~n~s~~~N~g~ 403 (623)
||||+||+.+.|.+||+||.+|+ || ++|||||||+|+|+ |.+.++..... .++++++..... ..+.+.+.|.|+
T Consensus 1 ViIP~~Ne~~~i~~~l~sl~~q~-yp~~~~EVivvdd~StD~-T~~i~~~~~~~~~~~~~~~~~~~~~~~gk~~aln~g~ 78 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSALD-YPKEKFEVILVDDHSTDG-TVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAI 78 (229)
T ss_pred EEEEECCCHHHHHHHHHHHHHCC-CCCCCEEEEEEECCCCCC-HHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHH
T ss_conf 59998898899999999999578-998868999998979716-7999999970569745530246777725999999999
Q ss_pred HHCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCC
Q ss_conf 61489747440588278281688998877428981699537664676756778704413254067865664322565555
Q gi|254780918|r 404 LHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARC 483 (623)
Q Consensus 404 ~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~ 483 (623)
+.|+||||+|+|+|+. ..|+||+.|+..+.++++++|++...... +++.+.+...+ ..... ...
T Consensus 79 ~~a~ge~i~~lDaD~~-~~~~~l~~~~~~~~~~~~~~v~g~~~~~~-----~~~~~~~~~~~-------~~~~~-~~~-- 142 (229)
T cd04192 79 KAAKGDWIVTTDADCV-VPSNWLLTFVAFIQKEQIGLVAGPVIYFK-----GKSLLAKFQRL-------DWLSL-LGL-- 142 (229)
T ss_pred HHCCCCEEEEECCCCC-CCHHHHHHHHHHHHCCCCEEEECCEEEEC-----CCCHHHHHHHH-------HHHHH-HHH--
T ss_conf 8646776998567656-58769999999974899479988741007-----99999999999-------99999-999--
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEE--CCCEEEEEECCC
Q ss_conf 7644222233444441110110204388889871799976876323168899999974981998--475499951773
Q gi|254780918|r 484 SVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVW--TPHADLYHDESR 559 (623)
Q Consensus 484 ~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~--~P~a~v~H~es~ 559 (623)
..... ... .....+|+||++||++|+++||||+.......+|.++|.|+.+.|+++.| .|++.++|..-.
T Consensus 143 -~~~~~----~~~-~~~~~~G~~~~~rr~~~~~vGGfd~~~~~~~~Dd~~~~~~l~~~g~ki~y~~~p~a~v~~~~p~ 214 (229)
T cd04192 143 -IAGSF----GLG-KPFMCNGANMAYRKEAFFEVGGFEGNDHIASGDDELLLAKVASKYPKVAYLKNPEALVTTQPVT 214 (229)
T ss_pred -HHHHH----HCC-CCEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCC
T ss_conf -99985----069-9558506215323999998099889998636999999999980899799983798699987889
No 29
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=100.00 E-value=5.6e-34 Score=226.44 Aligned_cols=200 Identities=19% Similarity=0.286 Sum_probs=154.2
Q ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC--EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHH
Q ss_conf 224589789997475898889999999998288997--489998775780679999999887579889998088885648
Q gi|254780918|r 62 QWQNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSH--WELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISA 139 (623)
Q Consensus 62 ~~~~~P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~--~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~ 139 (623)
...+-|.|||+||+||. ++.|.+||+|+++|+||+ +|+|+|||||+| .|.++++++++.+|++++...++|+|.+.
T Consensus 44 ~~~~lP~VSViIPayNE-e~~I~~~i~Sl~~~dYP~~~lEIIvVdDgStD-~T~ei~~~~~~~~p~~~v~~~~~n~GKa~ 121 (439)
T TIGR03111 44 FIGKLPDITIIIPVYNS-EDTLFNCIESIYNQTYPIELIDIILANNQSTD-DSFQVFCRAQNEFPGLSLRYMNSDQGKAK 121 (439)
T ss_pred CCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCH-HHHHHHHHHHHHCCCEEEEECCCCCCHHH
T ss_conf 96679976999935873-88999999999967999985599999789951-79999999886589839997689898599
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCC-EE-EECC----CCCCCHHHHC--
Q ss_conf 99999996599899997698752732079999998732475542022206758983-65-4225----6678966741--
Q gi|254780918|r 140 ASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQI-RS-GPYF----KYDFNPELFH-- 211 (623)
Q Consensus 140 a~N~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~-~~-~p~f----kp~~~~~~l~-- 211 (623)
|+|.|+..|+||||+.+|+|+.++||+|..++..+.++|++.++-+.- ..+.+.. +. .... +-. ..|+..
T Consensus 122 ALN~gl~~A~Ge~iv~~DADt~le~daL~~lv~~F~~dp~V~Av~G~V-~~~~~~i~~~~n~~~~ll~~~q-~~EY~~~f 199 (439)
T TIGR03111 122 ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVI-LTDKELIEKTKGRFLKLIRRCE-YFEYAQAF 199 (439)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECEE-EECCCHHCCCCCHHHHHHHHHH-HHHHHHHH
T ss_conf 999999977889899980898868569999999872099668996637-4054210132227878999999-99999999
Q ss_pred -----------CC-CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEE
Q ss_conf -----------47-854314576899999718878987730274136788642487522006842279
Q gi|254780918|r 212 -----------VH-NMITHLGVYRTETFKKIGGFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVLYH 267 (623)
Q Consensus 212 -----------s~-nyi~~~~~~rr~~~~~iGgf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vLy~ 267 (623)
+. ..-|.+.+|||+++.++||||++. .++|.|+.+|+-... ..+|...|+...+
T Consensus 200 ~~~R~~~s~~~~i~~isGa~~afRr~aL~~vGG~d~~t-ltED~DLT~ri~~~~-g~kI~f~p~Av~y 265 (439)
T TIGR03111 200 LAGRNFESQVNSLFTLSGAFSAFRRETILKTQLYNSET-VGEDTDMTFQIRELL-DGKVYLCENAIFY 265 (439)
T ss_pred HHHHHHHHHCCCEEEECCCHHHEEHHHHHHCCCCCCCC-CCHHHHHHHHHHHHC-CCEEEECCCCEEE
T ss_conf 99899999739978986831210299999809989998-507499999999976-9839976675799
No 30
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=100.00 E-value=2.2e-33 Score=222.82 Aligned_cols=197 Identities=16% Similarity=0.246 Sum_probs=145.4
Q ss_pred EEEEECCCCH--HHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 9999537745--56999998764207975157997148998168999999986308882799757888733889898786
Q gi|254780918|r 327 SIIIPTYNHH--HLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATL 404 (623)
Q Consensus 327 SIIIp~~n~~--~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~ 404 (623)
|||||+||+. ++|++||+||+.|| |+++|||||||||+++++.+.++.+..+. .++++... .+.|.+++.|.|++
T Consensus 1 SViip~YN~e~~~~l~~~l~Svl~Qt-~~~~EiIiVdDgSs~d~~~~i~~~~~~~~-~i~~i~~~-~N~G~~~a~N~gi~ 77 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQT-LPPDEVVLVKDGPVTQSLNEVLEEFKRKL-PLKVVPLE-KNRGLGKALNEGLK 77 (201)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCHHHHHHHHHHHCCC-CEEEEECC-CCCCHHHHHHHHHH
T ss_conf 98998884897899999999999579-99818999989999654399999861479-98999878-87898999776364
Q ss_pred HCCCCEEEEECCCCEEECHHHHHHHHHHH-CCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCC
Q ss_conf 14897474405882782816889988774-28981699537664676756778704413254067865664322565555
Q gi|254780918|r 405 HAKGQYFCFLNNDTEVINGQWLSEMMGIA-SQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARC 483 (623)
Q Consensus 405 ~a~geyilfLn~D~~v~~~~wL~~Ll~~~-~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~ 483 (623)
+|+||||+|||+|- +..|++|+.++..+ ++|++++|++...... .++.... . . .......
T Consensus 78 ~a~g~yI~~lD~DD-~~~p~~l~~~~~~l~~~~~~~~v~~~~~~~~-----~~~~~~~-~-~-----------~~~~~~~ 138 (201)
T cd04195 78 HCTYDWVARMDTDD-ISLPDRFEKQLDFIEKNPEIDIVGGGVLEFD-----SDGNDIG-K-R-----------RLPTSHD 138 (201)
T ss_pred HCCCCEEEECCCCC-CCCHHHHHHHHHHHHHCCCEEEEECCEEEEC-----CCCCEEE-E-E-----------ECCCCHH
T ss_conf 26766999818898-4671699999999987899699980379985-----7897766-7-9-----------7787505
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEE
Q ss_conf 764422223344444111011020438888987179997687632316889999997498199847549995
Q gi|254780918|r 484 SVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYH 555 (623)
Q Consensus 484 ~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H 555 (623)
....+ ......+.+.|+|+||++|+++|||++ + ..+||.||.+|+..+|+++.+.|...++.
T Consensus 139 ~~~~~-------~~~~~~~~~~~~~~rr~~~~~~Gg~~~--~-~~~eD~dl~lRl~~~G~~~~~ipe~L~~y 200 (201)
T cd04195 139 DILKF-------ARRRSPFNHPTVMFRKSKVLAVGGYQD--L-PLVEDYALWARMLANGARFANLPEILVKA 200 (201)
T ss_pred HHHHH-------HHHCCCCCCCHHHHHHHHHHHHCCCCC--C-CCCHHHHHHHHHHHCCCEEEECCCHHHEE
T ss_conf 78998-------874398757528999999998489998--8-96834999999997699399908168514
No 31
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=100.00 E-value=2.4e-33 Score=222.53 Aligned_cols=163 Identities=27% Similarity=0.479 Sum_probs=140.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 99747589888999999999828899748999877578067999999988757988999808888564899999996599
Q gi|254780918|r 71 VIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQLATS 150 (623)
Q Consensus 71 Iiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l~~a~G 150 (623)
||||+||. +++|.+||+||.+|||+++|+|||||+|+|. +.++++++ .++++++.+++|.|.+.|+|.|++.|+|
T Consensus 1 VIIptyN~-~~~l~~~l~Sl~~q~~~~~eiivVD~~S~d~-t~~~~~~~---~~~i~~i~~~~n~G~~~a~N~g~~~a~g 75 (166)
T cd04186 1 IIIVNYNS-LEYLKACLDSLLAQTYPDFEVIVVDNASTDG-SVELLREL---FPEVRLIRNGENLGFGAGNNQGIREAKG 75 (166)
T ss_pred EEEEECCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCH-HHHHHHHC---CCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 69998898-8999999999983779980999996899831-56777742---8988999898987767876168987165
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 89999769875273207999999873247554202220675898365422566789667414785431457689999971
Q gi|254780918|r 151 EWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYDFNPELFHVHNMITHLGVYRTETFKKI 230 (623)
Q Consensus 151 e~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~~~~~~l~s~nyi~~~~~~rr~~~~~i 230 (623)
+||+|+|+|+++.|++|..+++.+.++|++.++- |. ..|.++++||++|+++
T Consensus 76 ~~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~~~~--------------~~--------------~~g~~~~~rr~~~~~v 127 (166)
T cd04186 76 DYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVG--------------PK--------------VSGAFLLVRREVFEEV 127 (166)
T ss_pred CCEEEECCCEEECCCHHHHHHHHHHHCCCEEEEE--------------EC--------------CCEEEEEEEHHHHHHH
T ss_conf 7269987993888399999999998697989999--------------50--------------5489999999999985
Q ss_pred CCCCCCCC-CCCCCHHHHHHHHCCCCCCEEECCCCE-EEE
Q ss_conf 88789877-302741367886424875220068422-799
Q gi|254780918|r 231 GGFREKFE-GAQDYDLVLRFLENIDLSQIIHIPRVL-YHW 268 (623)
Q Consensus 231 Ggf~~~~~-~~~D~Dl~lR~~~~~~~~~i~hip~vL-y~~ 268 (623)
||||+.|. +.+|+||++|+...+ .+|.++|.++ ||+
T Consensus 128 Ggfde~~~~~~ED~dl~~R~~~~G--~~i~~~p~~~v~H~ 165 (166)
T cd04186 128 GGFDEDFFLYYEDVDLCLRARLAG--YRVLYVPQAVIYHH 165 (166)
T ss_pred CCCCHHHCCCCCHHHHHHHHHHCC--CCEEEECCEEEEEE
T ss_conf 899768657465999999999829--94999499899986
No 32
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=100.00 E-value=7.3e-33 Score=219.58 Aligned_cols=193 Identities=25% Similarity=0.316 Sum_probs=139.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 99995377455699999876420797515799714899816899999998630888279975788873388989878614
Q gi|254780918|r 327 SIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHA 406 (623)
Q Consensus 327 SIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a 406 (623)
|||||+||+...|++||+||++|| ++++|||||||+|+|+ |.++++++... .++++ ..++ .|.+++.|.|++.|
T Consensus 1 SViip~yN~~~~l~~~l~Si~~Q~-~~~~EiIvVDd~S~D~-t~~~~~~~~~~--~~~~~-~~~~-~G~~~a~N~g~~~a 74 (202)
T cd06433 1 SIITPTYNQAETLEETIDSVLSQT-YPNIEYIVIDGGSTDG-TVDIIKKYEDK--ITYWI-SEPD-KGIYDAMNKGIALA 74 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCC-HHHHHHHCCCC--EEEEE-ECCC-CCHHHHHHHHHHHC
T ss_conf 999997698899999999998378-9997999997998842-34453311341--25999-8888-88899987327754
Q ss_pred CCCEEEEECCCCEEECHHHHHHHHHHH-CCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 897474405882782816889988774-2898169953766467675677870441325406786566432256555576
Q gi|254780918|r 407 KGQYFCFLNNDTEVINGQWLSEMMGIA-SQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSV 485 (623)
Q Consensus 407 ~geyilfLn~D~~v~~~~wL~~Ll~~~-~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~~~ 485 (623)
+||||+|+|+|.. +.|++++.++..+ ..+++++|++...+.. .++... + ... .....
T Consensus 75 ~g~yi~~ld~DD~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~--~----~~~----------~~~~~ 132 (202)
T cd06433 75 TGDIIGFLNSDDT-LLPGALLAVVAAFAEHPEVDVVYGDVLLVD-----ENGRVI--G----RRR----------PPPFL 132 (202)
T ss_pred CCCEEECCCCCCE-ECCHHHHHHHHHHHHCCCCCEEECCEEEEC-----CCCCEE--E----EEC----------CCCCC
T ss_conf 8555322488862-684499999999987899409993469986-----999687--5----422----------66536
Q ss_pred CCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEE
Q ss_conf 44222233444441110110204388889871799976876323168899999974981998475499951
Q gi|254780918|r 486 PNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHD 556 (623)
Q Consensus 486 ~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~ 556 (623)
..... ..+ .+...++++||++|+++|||||. |. .+||.|||+|+.++|+++.|+|++.+++.
T Consensus 133 ~~~~~-----~~~--~~~~~~~~~r~~~~~~ig~fd~~-~~-~~eD~d~~~R~~~~g~~i~~ip~~l~~yR 194 (202)
T cd06433 133 DKFLL-----YGM--PICHQATFFRRSLFEKYGGFDES-YR-IAADYDLLLRLLLAGKIFKYLPEVLAAFR 194 (202)
T ss_pred HHHHH-----CCC--CCCCCCEEEEEEEHHHHCCCCCC-CC-CCHHHHHHHHHHHCCCCEEECCCCEEEEE
T ss_conf 78885-----468--86665135640304550898867-68-02299999999983993998487789994
No 33
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=100.00 E-value=7.6e-33 Score=219.50 Aligned_cols=174 Identities=22% Similarity=0.325 Sum_probs=132.0
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC-CEEEEECCCCCC--HHHHHHHHHHH
Q ss_conf 997475898889999999998288997489998775780679999999887579-889998088885--64899999996
Q gi|254780918|r 71 VIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDS-RIKVVFRAKNGH--ISAASNSAAQL 147 (623)
Q Consensus 71 Iiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~-ri~~~~~~~n~g--~~~a~N~~l~~ 147 (623)
||||+||. +++|++||+||++|||+++|||||||+|+| .|.++++++....+ +++++. .+|.| .+.++|.|++.
T Consensus 1 VIIptyN~-~~~L~~~L~Sl~~Qt~~~~EIIvvDd~StD-~t~~~~~~~~~~~~~~i~~~~-~~~~g~~~~~arN~gi~~ 77 (182)
T cd06420 1 LIITTYNR-PEALELVLKSVLNQSILPFEVIIADDGSTE-ETKELIEEFKSQFPIPIKHVW-QEDEGFRKAKIRNKAIAA 77 (182)
T ss_pred CEEEECCC-HHHHHHHHHHHHHCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCCEEE-ECCCCHHHHHHHHHHHHH
T ss_conf 49987798-899999999998379999589999799961-489999999851887410001-005672689999999985
Q ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 59989999769875273207999999873247554202220675898365422566789667414785431457689999
Q gi|254780918|r 148 ATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYDFNPELFHVHNMITHLGVYRTETF 227 (623)
Q Consensus 148 a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~~~~~~l~s~nyi~~~~~~rr~~~ 227 (623)
|+|+||+|+|+|+++.|++++...+.+. ++. ++++....++ +..+...+ .++.++++|+.+
T Consensus 78 a~g~~i~flD~D~~~~~~~i~~~~~~~~--~~~-~~~g~~~~~~-----------~~~~~~~~-----~~~~~~~~r~~~ 138 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIELAE--PGV-FLSGSRVLLN-----------EKLTERGI-----RGCNMSFWKKDL 138 (182)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHC--CCE-EEECCEEEEC-----------CCCCCCCC-----CEEEEEEEHHHH
T ss_conf 5887288878983279109999999708--990-8986168717-----------53452640-----244899999999
Q ss_pred HHHCCCCCCCC--CCCCCHHHHHHHHCCCCCCEEECCCCEEEE
Q ss_conf 97188789877--302741367886424875220068422799
Q gi|254780918|r 228 KKIGGFREKFE--GAQDYDLVLRFLENIDLSQIIHIPRVLYHW 268 (623)
Q Consensus 228 ~~iGgf~~~~~--~~~D~Dl~lR~~~~~~~~~i~hip~vLy~~ 268 (623)
.++||||+.|. |.||+||++|+...+ .++..+|.....|
T Consensus 139 ~~vGgfde~~~~~g~ED~Dl~~Rl~~~G--~k~~~~~~~~~~y 179 (182)
T cd06420 139 LAVNGFDEEFTGWGGEDSELVARLLNSG--IKFRKLKFAAIVF 179 (182)
T ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHCC--CCEEEECCCEEEE
T ss_conf 9858997002789977999999999829--9999616876999
No 34
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=100.00 E-value=1.1e-32 Score=218.48 Aligned_cols=251 Identities=18% Similarity=0.220 Sum_probs=168.8
Q ss_pred EEEEECCCCH-HHHHHHHHHHHHCCCCCCE--EEEEECCCCCCHHHHHHHHHHH-HCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 9999537745-5699999876420797515--7997148998168999999986-3088827997578887338898987
Q gi|254780918|r 327 SIIIPTYNHH-HLLKICLESIYHKTTYSSF--EVIIIDNLSDDSKTFLYLQKIQ-KKYPNLRVITDNTHPFNYSRINNNA 402 (623)
Q Consensus 327 SIIIp~~n~~-~~l~~cl~Sl~~~t~y~~~--EiivVdn~S~d~~t~~~l~~~~-~~~~~~~~i~~~~~~~n~s~~~N~g 402 (623)
||||+.+|.. ..|-+++.|++++| ++++ |||+|||+|+++.....+.... +..+.+++++... .-|..+++|.|
T Consensus 1 SVII~f~NE~~s~LlRtv~Svl~rT-P~~LL~EIILVDD~S~~~~l~~~l~~~~~~~~~~Vkvir~~~-r~GlirAR~~G 78 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRT-PPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKK-REGLIRARIAG 78 (299)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCC-CHHHCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCC-CCCHHHHHHHH
T ss_conf 9899994780888999899998639-988936899996799952431247999986189459998776-53249998776
Q ss_pred HHHCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCC--CCCCCCC
Q ss_conf 86148974744058827828168899887742898169953766467675677870441325406786566--4322565
Q gi|254780918|r 403 TLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAG--HKNKHHK 480 (623)
Q Consensus 403 ~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~--~~~~~~~ 480 (623)
++.|+||+|+|||+++++ +++||+.|++......-.+|.|.+-.- ...+..+.+...+..|..+ -.+...+
T Consensus 79 a~~A~G~vlvFLDsH~e~-~~gWLePLL~~I~en~~~Vv~P~Id~I------d~~tf~y~~~~~~~~g~f~W~l~f~w~~ 151 (299)
T cd02510 79 ARAATGDVLVFLDSHCEV-NVGWLEPLLARIAENRKTVVCPIIDVI------DADTFEYRGSSGDARGGFDWSLHFKWLP 151 (299)
T ss_pred HHHHCCCEEEEECCCEEE-CCCHHHHHHHHHHHCCCEEEECCCCEE------CCCCCEEECCCCCEEEEECCEEEEEEEC
T ss_conf 887348669993687231-467789999998729988997873128------7888236416886358980224788832
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEECCC-
Q ss_conf 5557644222233444441110110204388889871799976876323168899999974981998475499951773-
Q gi|254780918|r 481 ARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHDESR- 559 (623)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~es~- 559 (623)
....... ......+.....+.|.+++|.|+.|.++||||+.+-..++|++||++|++..|.++...|.++|-|.--.
T Consensus 152 ~~~~~~~--~~~~~~p~~sP~maGGlfAi~r~~F~elG~yD~gm~~WGgEn~ElSfRvW~CGG~i~~vPCSrVgHifR~~ 229 (299)
T cd02510 152 LPEEERR--RESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFRRK 229 (299)
T ss_pred CCHHHHC--CCCCCCCEECCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHCCCEEEEEECCEEEEEECCC
T ss_conf 9978943--44889767654001215898899999747978777314741113230202128659985446378874367
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3677668999999999999999988388841
Q gi|254780918|r 560 TRKYDHEDPAKMIVFQEACQYLQKRWKKIIE 590 (623)
Q Consensus 560 srg~~~~~~~k~~~~~~~~~~~~~rW~~~~~ 590 (623)
.... ..|.......++.....+-|.+..+
T Consensus 230 ~~py--~~~~~~~~~~rN~~R~AeVWmDeyk 258 (299)
T cd02510 230 RKPY--TFPGGSGTVLRNYKRVAEVWMDEYK 258 (299)
T ss_pred CCCC--CCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 8888--7877553555313313555778999
No 35
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=100.00 E-value=7.9e-32 Score=213.25 Aligned_cols=206 Identities=19% Similarity=0.213 Sum_probs=152.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 99995377455699999876420797515799714899816899999998630888279975788873388989878614
Q gi|254780918|r 327 SIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHA 406 (623)
Q Consensus 327 SIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a 406 (623)
|||||+||+.++|++||+|+++|| |+++|||||||||+| +|.++++++..+.+.+..+.....+.|.++..|.|++.|
T Consensus 1 SViip~yN~~~~l~~~i~Sil~Qt-~~~~EiivvDDgStD-~t~~ii~~~~~~~~~~~~~~~~~~n~G~~~n~n~gi~~a 78 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSILAQT-YKNDELIISDDGSTD-GTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAA 78 (214)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCC-CCCEEEEEEECCCCC-CHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHC
T ss_conf 989991798889999999998379-988699999899972-379999999975886513666588805999999999864
Q ss_pred CCCEEEEECCCCEEECHHHHHHHHHHH-CCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 897474405882782816889988774-2898169953766467675677870441325406786566432256555576
Q gi|254780918|r 407 KGQYFCFLNNDTEVINGQWLSEMMGIA-SQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSV 485 (623)
Q Consensus 407 ~geyilfLn~D~~v~~~~wL~~Ll~~~-~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~~~ 485 (623)
+|||++|+|+|- +..|++|+.++..+ ..|++++|++....-+ .++.. .+.. .....+. ..
T Consensus 79 ~geyi~~lD~DD-~~~p~~l~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~------~~~~-----~~~~~~~--~~ 139 (214)
T cd04196 79 DGDYVFFCDQDD-IWLPDKLERLLKAFLKDDKPLLVYSDLELVD-----ENGNP------IGES-----FFEYQKI--KP 139 (214)
T ss_pred CCCEEECCCCCC-CCCHHHHHHHHHHHHHCCCEEEEECCEEEEC-----CCCCC------CCCC-----CCCCCCC--CC
T ss_conf 787574137765-6286599999999985899089992739998-----99989------2344-----3333567--70
Q ss_pred CCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEE---ECCCC
Q ss_conf 4422223344444111011020438888987179997687632316889999997498199847549995---17733
Q gi|254780918|r 486 PNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYH---DESRT 560 (623)
Q Consensus 486 ~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H---~es~s 560 (623)
.... ...... ..++|+|+++||++++++|||||... .++|.+|.+|+...| ++++.|...+.+ -.|.|
T Consensus 140 ~~~~--~~~~~~--~~~~g~~~~~Rk~~~~~~g~~~~~~~--~~~D~~l~l~~~~~~-~i~~i~~~l~~YR~H~~sis 210 (214)
T cd04196 140 GTSF--NNLLFQ--NVVTGCTMAFNRELLELALPFPDADV--IMHDWWLALLASAFG-KVVFLDEPLILYRQHGNNVV 210 (214)
T ss_pred HHHH--HHHHHH--CCCCCEEEEEEHHHHHHHCCCCCCCC--CCHHHHHHHHHHHCC-CEEEECCCEEEEEEECCCCC
T ss_conf 2339--999971--88876189988999998579994447--454999999999689-89998898799997288461
No 36
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=100.00 E-value=1.3e-32 Score=218.12 Aligned_cols=176 Identities=24% Similarity=0.329 Sum_probs=130.4
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99953774556999998764207975157997148998168999999986308882799757888733889898786148
Q gi|254780918|r 328 IIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHAK 407 (623)
Q Consensus 328 IIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a~ 407 (623)
||||+||+.+.|++||+|+++|| |+++|||||||+|+| +|.+.++++........++.....+++.++++|.|+++|+
T Consensus 1 ViIp~~N~~~~l~~~l~sl~~Q~-~~~~eIivvdd~S~d-~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~N~g~~~a~ 78 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLALD-YPKLEVIVVDDGSTD-DTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAK 78 (180)
T ss_pred EEEEECCCHHHHHHHHHHHHHCC-CCCEEEEEEECCCCH-HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCC
T ss_conf 09997797899999999998189-998189999899975-7899999986217971898447776779999752510267
Q ss_pred CCEEEEECCCCEEECHHHHHHHHHHH-CCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 97474405882782816889988774-28981699537664676756778704413254067865664322565555764
Q gi|254780918|r 408 GQYFCFLNNDTEVINGQWLSEMMGIA-SQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSVP 486 (623)
Q Consensus 408 geyilfLn~D~~v~~~~wL~~Ll~~~-~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~~~~ 486 (623)
|||++|||+|+. ..++||+.|+..+ ++|++|+||++..+.... +..+..+ ....+ .. ...
T Consensus 79 ~d~i~~lD~D~~-~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~---------~~~~~--~~---~~~ 139 (180)
T cd06423 79 GDIVVVLDADTI-LEPDALKRLVVPFFADPKVGAVQGRVRVRNGS----ENLLTRL---------QAIEY--LS---IFR 139 (180)
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHHHHHCCCEEEEEEEEEEECCC----CCHHHHH---------HHHHH--HH---HHH
T ss_conf 557987438720-08569999999998795989998579854699----8789999---------98998--87---756
Q ss_pred CCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHH
Q ss_conf 422223344444111011020438888987179997687
Q gi|254780918|r 487 NYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNT 525 (623)
Q Consensus 487 ~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~ 525 (623)
... ........+.+++|+|+|+||++|++||||||.++
T Consensus 140 ~~~-~~~~~~~~~~~~~G~~~~~rr~~~e~vGGfDe~~~ 177 (180)
T cd06423 140 LGR-RAQSALGGVLVLSGAFGAFRREALREVGGWDEDTL 177 (180)
T ss_pred HHH-HHHHHCCCCEEECCEEEEEEHHHHHHCCCCCCCCC
T ss_conf 666-67876599506785599988999998399999998
No 37
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=100.00 E-value=1.2e-31 Score=212.07 Aligned_cols=201 Identities=23% Similarity=0.316 Sum_probs=141.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCCC-EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE--EE---CCCCCCHHHHHHH
Q ss_conf 999537745569999987642079751-57997148998168999999986308882799--75---7888733889898
Q gi|254780918|r 328 IIIPTYNHHHLLKICLESIYHKTTYSS-FEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVI--TD---NTHPFNYSRINNN 401 (623)
Q Consensus 328 IIIp~~n~~~~l~~cl~Sl~~~t~y~~-~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i--~~---~~~~~n~s~~~N~ 401 (623)
||||+||..++|++||+|+++|| |++ +|||||||||+| .|.+.++++.++.++.+++ .. .+.+.|.+++.|.
T Consensus 1 VIiP~YN~~~~l~~~l~Svl~Qt-y~~~~EiIiVDDgStD-~t~~ii~~~~~~~~~~~~~~~~~~~~~~~~~G~~~arN~ 78 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQQD-FEGTLELSVFNDASTD-KSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQ 78 (219)
T ss_pred CEECCCCCHHHHHHHHHHHHHCC-CCCCEEEEEEECCCCC-CHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHH
T ss_conf 98867898899999999998488-9998999999899981-569999999986667776999823677664678999999
Q ss_pred HHHHCCCCEEEEECCCCEEECHHHHHHHHHHHC-CCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCC
Q ss_conf 786148974744058827828168899887742-8981699537664676756778704413254067865664322565
Q gi|254780918|r 402 ATLHAKGQYFCFLNNDTEVINGQWLSEMMGIAS-QPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHK 480 (623)
Q Consensus 402 g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~-~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~ 480 (623)
|++.|+||||+|||+|- ++.|++|+.++..+. .|. .+||+.+... ..+.+..... +.....
T Consensus 79 gi~~A~GeyI~flDsDD-~~~p~~l~~~~~~~~~~~~-~~v~~~~~~~-----~~~~~~~~~~-------~~~~~~---- 140 (219)
T cd06913 79 AIAQSSGRYLCFLDSDD-VMMPQRIRLQYEAALQHPN-SIIGCQVRRI-----PEDSTERYTR-------WINTLT---- 140 (219)
T ss_pred HHHHCCCCEEEEECCCC-CCCHHHHHHHHHHHHHCCC-CEEEEEEEEE-----CCCCCEECCC-------CCCCCC----
T ss_conf 99977888788618976-4276599999999985999-6999878996-----6998523132-------235689----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEE
Q ss_conf 555764422223344444111011020438888987179997687632316889999997498199847549995
Q gi|254780918|r 481 ARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYH 555 (623)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H 555 (623)
....... .....-..+...++|+||++|+++|||||... ...||.||++|+...|+++.+.|...++.
T Consensus 141 -----~~~~~~~-~~~~~~~~~~~~~~~~rr~~~~~~g~f~e~~~-~~~ED~~~~~r~l~~~~~i~~i~~~L~~Y 208 (219)
T cd06913 141 -----REQLLTQ-VYTSHGPTVIMPTWFCSREWFSHVGPFDEGGK-GVPEDLLFFYEHLRKGGGVYRVDRCLLLY 208 (219)
T ss_pred -----HHHHHHH-HHHHCCCCEEEHHHHHHHHHHHHHCCCCCCCC-CCCHHHHHHHHHHHCCCCEEEECCCEEEE
T ss_conf -----8999998-87616983440035532999999289996578-67028999999997499699969977999
No 38
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.98 E-value=2.7e-31 Score=210.02 Aligned_cols=205 Identities=19% Similarity=0.267 Sum_probs=143.9
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCCCCC--EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 8169999537745569999987642079751--57997148998168999999986308882799757888733889898
Q gi|254780918|r 324 PLVSIIIPTYNHHHLLKICLESIYHKTTYSS--FEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNN 401 (623)
Q Consensus 324 P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~--~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~ 401 (623)
|.||||||+||+.+.+++||+|+.++ +||+ +|||||||+|++ +|.+.++.+........+.....++.+.+++.|.
T Consensus 1 P~vsViIPa~NE~~vI~~ti~sl~~~-~YP~~~~evivv~d~s~~-~t~~~~~~~~~~~~~~~~~~~~~~~~gK~~alN~ 78 (241)
T cd06427 1 PVYTILVPLYKEAEVLPQLIASLSAL-DYPRSKLDVKLLLEEDDE-ETIAAARALRLPSIFRVVVVPPSQPRTKPKACNY 78 (241)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHC-CCCCCCEEEEEEECCCCH-HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 94999996689889999999999967-999761799999889996-8999999857876708999638988746999999
Q ss_pred HHHHCCCCEEEEECCCCEEECHHHHHHHHHHHC--CCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCC-C
Q ss_conf 786148974744058827828168899887742--8981699537664676756778704413254067865664322-5
Q gi|254780918|r 402 ATLHAKGQYFCFLNNDTEVINGQWLSEMMGIAS--QPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNK-H 478 (623)
Q Consensus 402 g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~--~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~-~ 478 (623)
|++.++|||++++|+|+. .+|+||.+++..+. .|.+|+|++.+.+.+.. .+.+ ..... ..+. .
T Consensus 79 al~~a~gd~v~~~DAD~~-~~p~~L~~~v~~f~~~~~~v~~v~~~~~~~n~~----~~~~------~~~~~---~e~~~~ 144 (241)
T cd06427 79 ALAFARGEYVVIYDAEDA-PDPDQLKKAVAAFARLDDKLACVQAPLNYYNAR----ENWL------TRMFA---LEYAAW 144 (241)
T ss_pred HHHHCCCCEEEEECCCCC-CCHHHHHHHHHHHHHCCCCEEEEECEEEECCCC----CCHH------HHHHH---HHHHHH
T ss_conf 999615885999786556-497799999999985798557773316745899----9889------99889---999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEE
Q ss_conf 65555764422223344444111011020438888987179997687632316889999997498199847549995
Q gi|254780918|r 479 HKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYH 555 (623)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H 555 (623)
+... ..+. ........++|+.+++||++++++||||+..+ .||.||++|+...||++.|.+.+ ++.
T Consensus 145 ~~~~--~~~~-----~~~~~~~~~~G~~~~~Rr~~l~~vGg~~~~~~---tED~dl~~rl~~~G~ri~~~~~~-~~~ 210 (241)
T cd06427 145 FDYL--LPGL-----ARLGLPIPLGGTSNHFRTDVLRELGGWDPFNV---TEDADLGLRLARAGYRTGVLNST-TLE 210 (241)
T ss_pred HHHH--HHHH-----HHCCCEEECCCCHHHHHHHHHHHHCCCCCCCC---CCHHHHHHHHHHCCCEEEECCCC-EEC
T ss_conf 9999--9999-----96699343387268779999998099988764---64799999999869949853754-423
No 39
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.97 E-value=4.4e-31 Score=208.71 Aligned_cols=196 Identities=20% Similarity=0.284 Sum_probs=146.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC--EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHH
Q ss_conf 4589789997475898889999999998288997--48999877578067999999988757988999808888564899
Q gi|254780918|r 64 QNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSH--WELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAAS 141 (623)
Q Consensus 64 ~~~P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~--~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~ 141 (623)
+..|+||||||+||. +++|.+||+|+++|+||+ +|+|||||+|+| .|.++++++.. ++++++.++.|.|.+.|+
T Consensus 26 ~~~P~VsViIP~yNE-~~~i~~~l~sl~~q~Yp~~~~eVIvvdD~StD-~T~ei~~~~~~--~~~~v~~~~~n~Gk~~Al 101 (251)
T cd06439 26 AYLPTVTIIIPAYNE-EAVIEAKLENLLALDYPRDRLEIIVVSDGSTD-GTAEIAREYAD--KGVKLLRFPERRGKAAAL 101 (251)
T ss_pred CCCCEEEEEEEECCC-HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCH-HHHHHHHHHHC--CCCEEECCCCCCCHHHHH
T ss_conf 899935999973898-89999999999966999887899999799981-49999999745--585043167776799999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEE-EECCCCCCCHH--------HHCC
Q ss_conf 99999659989999769875273207999999873247554202220675898365-42256678966--------7414
Q gi|254780918|r 142 NSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRS-GPYFKYDFNPE--------LFHV 212 (623)
Q Consensus 142 N~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~-~p~fkp~~~~~--------~l~s 212 (623)
|.|++.|+||||+++|+|+++.|++|..++..+ .+|+++++.+.-...+...... .-.+ |... .+.+
T Consensus 102 N~gi~~a~gd~i~~lDaD~~~~~~~l~~l~~~f-~d~~vg~V~g~~~~~~~~~~~~~~~~y---~~~~~~~~~~~s~~~~ 177 (251)
T cd06439 102 NRALALATGEIVVFTDANALLDPDALRLLVRHF-ADPSVGAVSGELVIVDGGGSGSGEGLY---WKYENWLKRAESRLGS 177 (251)
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHH-HCCCEEEEEEEEECCCCCCHHHHHHHH---HHHHHHHHHHHHHCCC
T ss_conf 999987678989833787651876999999986-099838997148704898037899999---9999999999985499
Q ss_pred CC-CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEEEEECCCC
Q ss_conf 78-543145768999997188789877302741367886424875220068422799533885
Q gi|254780918|r 213 HN-MITHLGVYRTETFKKIGGFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVLYHWRMHDNS 274 (623)
Q Consensus 213 ~n-yi~~~~~~rr~~~~~iGgf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vLy~~R~~~~s 274 (623)
.. ..|.+.+|||++++ +|++. ...+|+||.+|+.+++ .+|...|++... -.++.+
T Consensus 178 ~~~~~G~~~~~Rr~~~~---~~~~~-~~~ED~dl~~rl~~~G--~ki~y~p~a~~~-~~~p~t 233 (251)
T cd06439 178 TVGANGAIYAIRRELFR---PLPAD-TINDDFVLPLRIARQG--YRVVYEPDAVAY-EEVAED 233 (251)
T ss_pred EEEECCHHHHHHHHHHC---CCCCC-CCCCHHHHHHHHHHCC--CEEEECCCCEEE-EECCCC
T ss_conf 24886689995899980---97877-7653899999999869--979974885899-878899
No 40
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.97 E-value=8.2e-31 Score=207.02 Aligned_cols=207 Identities=21% Similarity=0.303 Sum_probs=141.3
Q ss_pred EEEEEECCCC-HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 6999953774-556999998764207975157997148998168999999986308882799757888733889898786
Q gi|254780918|r 326 VSIIIPTYNH-HHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATL 404 (623)
Q Consensus 326 VSIIIp~~n~-~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~ 404 (623)
||||||+||. .+.+++||+|++.++ ++|||||||+|+|+ +.+.++.... .+.+.++ ..++ .|.+++.|.|++
T Consensus 2 VsviIPayNE~~~il~~~l~s~~~~~---~~eiivV~D~s~d~-~~~~~~~~~~-~~~~~v~-~~~~-~GK~~Aln~~l~ 74 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQK---PLEIIVVTDGDDEP-YLSILSQTVK-YGGIFVI-TVPH-PGKRRALAEGIR 74 (235)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHCCC---CCEEEEEECCCCCC-HHHHHHHHCC-CCCEEEE-ECCC-CCHHHHHHHHHH
T ss_conf 79999522697689999999998089---99899998899972-8999998634-8978999-8898-998999999999
Q ss_pred HCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 14897474405882782816889988774289816995376646767567787044132540678656643225655557
Q gi|254780918|r 405 HAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCS 484 (623)
Q Consensus 405 ~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~~ 484 (623)
.++||||+++|+|+. ++|+||++|+.++.+|+||+|++...... ++.+.... . . .... .. ..
T Consensus 75 ~a~~d~v~~~DaD~~-~~~~~l~~l~~~f~d~~vg~V~~~~~~~~-----~~~~~~~~--~----~--~~~~--~~--~~ 136 (235)
T cd06434 75 HVTTDIVVLLDSDTV-WPPNALPEMLKPFEDPKVGGVGTNQRILR-----PRDSKWSF--L----A--AEYL--ER--RN 136 (235)
T ss_pred HCCCCEEEEECCCCC-CCHHHHHHHHHHHCCCCEEEEEEEEEEEC-----CCCCHHHH--H----H--HHHH--HH--HH
T ss_conf 757788999858853-58889999999648998799970388646-----99989999--9----9--9999--99--99
Q ss_pred CCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCH---HHHH----HHCCHHHHHHHHHHCCCEEEECCCEEEEEEC
Q ss_conf 64422223344444111011020438888987179997---6876----3231688999999749819984754999517
Q gi|254780918|r 485 VPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDE---KNTP----VVFSDIDLCLRILEAGYRNVWTPHADLYHDE 557 (623)
Q Consensus 485 ~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE---~~~~----~~~eDvDlclR~~~~G~r~v~~P~a~v~H~e 557 (623)
..... .......+..++|+|+++||+++.+++.+++ +.+. ...||.||++|+.++||+++|.|.+.++|..
T Consensus 137 ~~~~~--~~~~~g~~~~~~G~~~~~Rr~~l~~~~~~~~~~~~~~~g~~~~~~ED~~lt~r~~~~G~r~~y~~~a~v~~~~ 214 (235)
T cd06434 137 EEIRA--AMSYDGGVPCLSGRTAAYRTEILKDFLFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVYQYTSEAYTET 214 (235)
T ss_pred HHHHH--HHHHCCCEEEECCHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCEEEEEC
T ss_conf 99999--9985598689637079999999985330101230002777776426999999999869989992477899978
Q ss_pred CC
Q ss_conf 73
Q gi|254780918|r 558 SR 559 (623)
Q Consensus 558 s~ 559 (623)
..
T Consensus 215 p~ 216 (235)
T cd06434 215 PE 216 (235)
T ss_pred CC
T ss_conf 68
No 41
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.97 E-value=1.6e-30 Score=205.27 Aligned_cols=169 Identities=18% Similarity=0.216 Sum_probs=139.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC--EEEEECCCCCC---HHHHH
Q ss_conf 97899974758988899999999982889974899987757806799999998875798--89998088885---64899
Q gi|254780918|r 67 PLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSR--IKVVFRAKNGH---ISAAS 141 (623)
Q Consensus 67 P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~r--i~~~~~~~n~g---~~~a~ 141 (623)
|.||||||+||. +..|.+||+|+++|+||++|+|++||+|+|+ +.++++++....|. ++++....+.| -..++
T Consensus 1 P~VSIivP~~ne-e~~i~~~l~sll~qdYp~~Eiivv~d~s~D~-t~~i~~~~~~~~p~~~~~~~~~~~~~g~~~K~~~l 78 (196)
T cd02520 1 PGVSILKPLCGV-DPNLYENLESFFQQDYPKYEILFCVQDEDDP-AIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNL 78 (196)
T ss_pred CCEEEEEECCCC-CHHHHHHHHHHHHCCCCCCEEEEEECCCCCC-HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHH
T ss_conf 967999968999-2779999999996689980899997899997-89999998742877665999768887844899999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCHHHHCCCCCCCHHHH
Q ss_conf 99999659989999769875273207999999873247554202220675898365422566789667414785431457
Q gi|254780918|r 142 NSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYDFNPELFHVHNMITHLGV 221 (623)
Q Consensus 142 N~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~~~~~~l~s~nyi~~~~~ 221 (623)
|.|++.|+||+|+++|+|+.+.|++|..++..+ .+|++++|.+ + | ..|...+
T Consensus 79 ~~g~~~a~gdii~~~DaD~~~~~~~L~~lv~~f-~~p~vg~V~~-------------~-~-------------~~G~~~~ 130 (196)
T cd02520 79 IKGYEEARYDILVISDSDISVPPDYLRRMVAPL-MDPGVGLVTC-------------L-C-------------AFGKSMA 130 (196)
T ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH-CCCCCCEEEC-------------C-C-------------CCCCEEE
T ss_conf 999996458999998899772955999999985-6999467964-------------7-7-------------6785567
Q ss_pred HHHHHHHHHCCCCCCCC-CCCCCHHHHHHHHCCCCCCEEECCCCEEE
Q ss_conf 68999997188789877-30274136788642487522006842279
Q gi|254780918|r 222 YRTETFKKIGGFREKFE-GAQDYDLVLRFLENIDLSQIIHIPRVLYH 267 (623)
Q Consensus 222 ~rr~~~~~iGgf~~~~~-~~~D~Dl~lR~~~~~~~~~i~hip~vLy~ 267 (623)
|||++++++|||+.-.+ .++|+||.+|+.+.+ .+|...|..+.+
T Consensus 131 ~Rr~~l~~~Gg~~~~~~~l~ED~~l~~~l~~~G--~ri~~~p~a~~~ 175 (196)
T cd02520 131 LRREVLDAIGGFEAFADYLAEDYFLGKLIWRLG--YRVVLSPYVVMQ 175 (196)
T ss_pred EEHHHHHHCCCHHHHCCCCHHHHHHHHHHHHCC--CEEEEECCCEEE
T ss_conf 889999874994453454179999999999859--979983544785
No 42
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.97 E-value=1.4e-30 Score=205.70 Aligned_cols=215 Identities=18% Similarity=0.255 Sum_probs=147.1
Q ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCC-CEEEEEECCCCCCHHHHHHHHHHHHCCCC---CEEEEECCCCC
Q ss_conf 678888816999953774556999998764207975-15799714899816899999998630888---27997578887
Q gi|254780918|r 318 MIPNPPPLVSIIIPTYNHHHLLKICLESIYHKTTYS-SFEVIIIDNLSDDSKTFLYLQKIQKKYPN---LRVITDNTHPF 393 (623)
Q Consensus 318 ~~~~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~-~~EiivVdn~S~d~~t~~~l~~~~~~~~~---~~~i~~~~~~~ 393 (623)
+.|+.-|+||||||.+|+...+.+||+||.+|+ || ++|||||||+|+| .|.+.++++...++. ++++...+.|-
T Consensus 34 ~~p~~~P~VSViIPARNEe~~I~~~L~Sl~~Q~-yp~~~EvivvDD~StD-~T~~i~~~~~~~~~~~~rl~vi~~~~lP~ 111 (384)
T TIGR03469 34 PSPEAWPAVVAVVPARNEADVIGECVTSLLEQD-YPGKLHVILVDDHSTD-GTADIARAAARAYGRGDRLTVVSGQPLPP 111 (384)
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCC-CCCCEEEEEEECCCCC-HHHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 997789976999768987888999999998378-9997599999569986-39999999974468886389825898998
Q ss_pred ---CHHHHHHHHHHHC-----CCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEE
Q ss_conf ---3388989878614-----89747440588278281688998877428981699537664676756778704413254
Q gi|254780918|r 394 ---NYSRINNNATLHA-----KGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVI 465 (623)
Q Consensus 394 ---n~s~~~N~g~~~a-----~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v 465 (623)
|-..+|+.|+++| +|||++|+|.||.+ +|++|++++++++++++++|++.-.... ....+ ..++-+- +
T Consensus 112 gW~GK~~A~~qg~~~A~~~~~~ge~llF~DADv~~-~p~~l~~~v~~~~~~~~~lvS~~p~~~~-~~~~e-~l~~p~~-~ 187 (384)
T TIGR03469 112 GWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAH-GPDNLARLVARARAEGLDLVSLMVRLRC-ESFWE-KLLIPAF-V 187 (384)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC-CCCHHHHHHHHHHHCCCCEEECCCCEEC-CCHHH-HHHHHHH-H
T ss_conf 76511889999999985257877579994575000-8769999999999759984733354036-97899-9999999-9
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEE
Q ss_conf 06786566432256555576442222334444411101102043888898717999768763231688999999749819
Q gi|254780918|r 466 MGINNIAGHKNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRN 545 (623)
Q Consensus 466 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~ 545 (623)
.- .....+.. ... .......+..|+||++||++|+++||+..-.- .--||+.|+.+++++|+++
T Consensus 188 ~~-------~~~~~p~~-----~~~---~~~~~~~~a~G~~~l~rR~ay~~iGGh~av~~-~v~DD~~Lar~ik~~G~~v 251 (384)
T TIGR03469 188 FF-------FQKLYPFR-----WVN---DPRRRTAAAAGGCILIRREALERIGGIAAIRG-ALIDDCTLAAAVKRSGGRI 251 (384)
T ss_pred HH-------HHHHCCHH-----HHC---CCCCCCHHCCCCEEEEEHHHHHHCCCHHHHHC-CCCCHHHHHHHHHHCCCCE
T ss_conf 99-------99966488-----753---96533001158658978999987488888833-7332899999999759928
Q ss_pred EECCCEEEE
Q ss_conf 984754999
Q gi|254780918|r 546 VWTPHADLY 554 (623)
Q Consensus 546 v~~P~a~v~ 554 (623)
.+.....+.
T Consensus 252 ~~~~g~~~v 260 (384)
T TIGR03469 252 WLGLAARTR 260 (384)
T ss_pred EEECCCCEE
T ss_conf 986265337
No 43
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.97 E-value=4.8e-30 Score=202.33 Aligned_cols=213 Identities=19% Similarity=0.240 Sum_probs=149.0
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCE--EEEECCC-CCCH
Q ss_conf 788888169999537745569999987642079751579971489981689999999863088827--9975788-8733
Q gi|254780918|r 319 IPNPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLR--VITDNTH-PFNY 395 (623)
Q Consensus 319 ~~~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~--~i~~~~~-~~n~ 395 (623)
.|+.-|.||||||.+|..+.+.+||+|+++| +||++|||+++++|+|+ +.+.++++.+++|++. ++..... +.|.
T Consensus 36 ~p~~~P~VSil~P~~~e~~~l~~~L~sl~~q-dYP~~evi~~vd~~~D~-a~~i~~~l~~~~p~~~~~~v~~~~~~g~n~ 113 (373)
T TIGR03472 36 APRAWPPVSVLKPLHGDEPELYENLASFCRQ-DYPGFQMLFGVQDPDDP-ALAVVRRLRADFPDADIDLVIDARRHGPNR 113 (373)
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHC-CCCCEEEEEEECCCCCC-HHHHHHHHHHHCCCCCEEEEECCCCCCCCH
T ss_conf 9999998079980799830499999999867-89982899997899997-899999999868999879985887678878
Q ss_pred -HHHHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCC
Q ss_conf -8898987861489747440588278281688998877428981699537664676756778704413254067865664
Q gi|254780918|r 396 -SRINNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGH 474 (623)
Q Consensus 396 -s~~~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~ 474 (623)
..+.+.++++|++|+++|.|+|+.+ +||||.+|+..+++|+||+|.+...... .++.... +. .
T Consensus 114 K~~~L~~~~~~a~~dil~~~DaD~~~-~p~~L~~lVa~l~~~~vglVt~~~~~~~-----~~~~~~~----l~------~ 177 (373)
T TIGR03472 114 KVSNLINMLPHARHDILVIADSDISV-GPDYLRQVVAPLADPDVGLVTCLYRGRP-----VPGFWSR----LG------A 177 (373)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCC-CHHHHHHHHHHHHCCCCCEEECCCCCCC-----CCCHHHH----HH------H
T ss_conf 99999999986278889998799752-8489999999974899775832564678-----8878999----99------9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEE
Q ss_conf 32256555576442222334444411101102043888898717999768763231688999999749819984754999
Q gi|254780918|r 475 KNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLY 554 (623)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~ 554 (623)
.+... ...++..... ... ......|.||++||+.++++|||+. +-..--||..++.+++++|+|+++.|.+...
T Consensus 178 ~~~~~---~~~~~~~~~~-~~~-~~~~~~G~~~~~RR~~l~~iGG~~~-~~~~laED~~L~~~i~~~G~rv~l~~~~v~~ 251 (373)
T TIGR03472 178 MGINH---NFLPSVMVAR-ALG-RARFCFGATMALRRATLEAIGGLAA-LAHHLADDYWLGELVRALGLRVVLAPVVVDT 251 (373)
T ss_pred HHHHH---HHHHHHHHHH-HCC-CCCCCCCCCCEEEHHHHHHCCCHHH-HHCCCHHHHHHHHHHHHCCCCEEECCHHHHC
T ss_conf 99999---8888899997-614-6533567401135999997479777-7215256899999999669988965626646
Q ss_pred E
Q ss_conf 5
Q gi|254780918|r 555 H 555 (623)
Q Consensus 555 H 555 (623)
.
T Consensus 252 ~ 252 (373)
T TIGR03472 252 D 252 (373)
T ss_pred C
T ss_conf 7
No 44
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.97 E-value=2.1e-30 Score=204.48 Aligned_cols=191 Identities=16% Similarity=0.200 Sum_probs=141.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHH-HCCCEEEEECCCCC-CHHHHHHHHHHH
Q ss_conf 9997475898889999999998288997489998775780679999999887-57988999808888-564899999996
Q gi|254780918|r 70 SVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYAN-MDSRIKVVFRAKNG-HISAASNSAAQL 147 (623)
Q Consensus 70 SIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~-~d~ri~~~~~~~n~-g~~~a~N~~l~~ 147 (623)
|||||+||.+.+.|++||+|+++|+||++|||||||+|+|..+.+.++++.. ..++++++..+.+. |.++|+|.|++.
T Consensus 1 SIiIPayNE~~~vi~~~l~sl~~~~Yp~~eIiVvdd~stD~t~~~~v~~~~~~~~~~~~~~~~~~~~g~K~~alN~~l~~ 80 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALER 80 (236)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98983589928999999999995799998799998929981589999999987299679999488899709999999996
Q ss_pred CCC--CEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCHHHH-----CC---CC---
Q ss_conf 599--899997698752732079999998732475542022206758983654225667896674-----14---78---
Q gi|254780918|r 148 ATS--EWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYDFNPELF-----HV---HN--- 214 (623)
Q Consensus 148 a~G--e~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~~~~~~l-----~s---~n--- 214 (623)
++| |+|+++|+|+++.|++|..++..+ ++|+++++-+.....+..+....... .+....+ .. .+
T Consensus 81 ~~~~~e~i~~~DaD~~~~pd~L~~~v~~f-~~p~vg~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (236)
T cd06435 81 TAPDAEIIAVIDADYQVEPDWLKRLVPIF-DDPRVGFVQAPQDYRDGEESLFKRMC--YAEYKGFFDIGMVSRNERNAII 157 (236)
T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHH-CCCCEEEEECCEECCCCCCCHHHHHH--HHHHHHHHHHHHHHHHCCCCEE
T ss_conf 47985499997688777868999999860-49876899556131487767999999--9999999998898885389747
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEE
Q ss_conf 5431457689999971887898773027413678864248752200684227
Q gi|254780918|r 215 MITHLGVYRTETFKKIGGFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVLY 266 (623)
Q Consensus 215 yi~~~~~~rr~~~~~iGgf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vLy 266 (623)
..|.+.++||++++++|||++.. .++|.||.+|+..++ .++++.|....
T Consensus 158 ~~G~~~~~Rr~~l~~iGgf~~~~-~~ED~dl~~rl~~~G--~~~~y~p~a~~ 206 (236)
T cd06435 158 QHGTMCLIRRSALDDVGGWDEWC-ITEDSELGLRMHEAG--YIGVYVAQSYG 206 (236)
T ss_pred ECCEEEEEEHHHHHHHCCCCCCC-CCCHHHHHHHHHHCC--CEEEECCCCEE
T ss_conf 66646887889999838988777-577799999999859--97997257779
No 45
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.97 E-value=4.1e-30 Score=202.75 Aligned_cols=194 Identities=25% Similarity=0.313 Sum_probs=137.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCC--EEEEEECCCCCHHHHHHHHH----HHHHHCCCEEEEECCCCCC-HHH
Q ss_conf 9789997475898889999999998288997--48999877578067999999----9887579889998088885-648
Q gi|254780918|r 67 PLISVIMPVYKIKKEWLEMAIESVRSQIYSH--WELCIAEDCSGDIETVSLLK----KYANMDSRIKVVFRAKNGH-ISA 139 (623)
Q Consensus 67 P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~--~EliivdD~S~d~~~~~~l~----~~~~~d~ri~~~~~~~n~g-~~~ 139 (623)
|.||||||+||. ++.|.+||+|+++|+||. +||+|+|| |+|.. .+.+. ++.....+++++..+.+.| .+.
T Consensus 1 P~VSViIPa~NE-~~~I~~~l~sl~~q~YP~~~~~I~VvDd-stD~t-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Ka~ 77 (232)
T cd06437 1 PMVTVQLPVFNE-KYVVERLIEAACALDYPKDRLEIQVLDD-STDET-VRLAREIVEEYAAQGVNIKHVRRADRTGYKAG 77 (232)
T ss_pred CEEEEEEECCCC-HHHHHHHHHHHHHCCCCCCEEEEEEEEC-CCCHH-HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf 939999955898-8999999999996799998089999979-99669-99999999766641996899836988886699
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCC----CCHH-HHCC--
Q ss_conf 99999996599899997698752732079999998732475542022206758983654225667----8966-7414--
Q gi|254780918|r 140 ASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYD----FNPE-LFHV-- 212 (623)
Q Consensus 140 a~N~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~----~~~~-~l~s-- 212 (623)
|+|.|++.++||||+++|+|+++.|++|..++..+ ++|++++|-+....++...........-. |... ..++
T Consensus 78 aln~gl~~a~gd~i~~~DaD~~~~~d~L~~~~~~f-~~~~~g~v~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYF-ADPKLGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSST 156 (232)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999997789889997764473847999999983-19985999666432588867999999999999999999998825
Q ss_pred ---CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEE
Q ss_conf ---7854314576899999718878987730274136788642487522006842279
Q gi|254780918|r 213 ---HNMITHLGVYRTETFKKIGGFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVLYH 267 (623)
Q Consensus 213 ---~nyi~~~~~~rr~~~~~iGgf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vLy~ 267 (623)
..+.|.+.+|||++++++|||++.. .++|+||.+|+..++ .++.++|+.+.+
T Consensus 157 ~~~~~~~G~~~~~Rr~~l~~~Gg~~~~~-~~ED~~l~~r~~~~G--~ri~~~~~a~~~ 211 (232)
T cd06437 157 GLFFNFNGTAGVWRKECIEDAGGWNHDT-LTEDLDLSYRAQLKG--WKFVYLDDVVVP 211 (232)
T ss_pred CCCEECCCEEEEEEHHHHHHHCCCCCCC-CCHHHHHHHHHHHCC--CEEEEECCCEEE
T ss_conf 9934126515877599999857998866-101899999999879--989980687797
No 46
>PRK10073 predicted glycosyl transferase; Provisional
Probab=99.96 E-value=7.4e-28 Score=188.93 Aligned_cols=217 Identities=22% Similarity=0.364 Sum_probs=151.7
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 88881699995377455699999876420797515799714899816899999998630888279975788873388989
Q gi|254780918|r 321 NPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINN 400 (623)
Q Consensus 321 ~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N 400 (623)
+..|+||||||+||...+|++||+||+.|| ++++|||+|||||+| .|.+.++++++++++++++... +.|.|.+.|
T Consensus 3 ~~~P~vSiiiP~YN~e~yl~~cl~Si~~Qt-~~~~EiIiVdDgStD-~s~~i~~~~~~~~~~i~vi~~~--N~G~s~ARN 78 (329)
T PRK10073 3 NSTPKLSIIVPLYNAGKDFRACMESLIAQT-WTALEIIIVNDGSTD-NSVEIAKHYAENYPHVRLLHQA--NAGASVARN 78 (329)
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHCCC-CCCEEEEEEECCCCC-CHHHHHHHHHHHCCCEEEEECC--CCCHHHHHH
T ss_conf 999978999928898899999999998089-999799999899982-5899999998129989999668--886189999
Q ss_pred HHHHHCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEE--EEEEECCCCCCCCC---CCEEEECCEEECCCCCCCCC
Q ss_conf 87861489747440588278281688998877428981699--53766467675677---87044132540678656643
Q gi|254780918|r 401 NATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAV--GARLWYRRKKLWKR---SKRLQHGGVIMGINNIAGHK 475 (623)
Q Consensus 401 ~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~V--g~~ll~~~~~~~~~---d~~iqhaG~v~g~~~~~~~~ 475 (623)
.|++.|+|+||.|+|+|- .+.|+.++.|+..+...+.-+| +...++.+.....+ ...+...++.
T Consensus 79 ~gl~~a~G~yi~f~DsDD-~l~~~~le~l~~~a~~~~~DIv~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------- 147 (329)
T PRK10073 79 TGLAVATGKYVAFVDADD-EVYPTMYETLMTMALEDDLDVAQCNADWCYRDTGEAWQSIPTDRLRSTGVL---------- 147 (329)
T ss_pred HHHHHCCCCEEEEECCCC-CCCCCHHHHHHHHHHHCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCCC----------
T ss_conf 999974888899975772-758876999999997479999998788999469722344530023435520----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCC-CCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEE-
Q ss_conf 22565555764422223344444111011020438888987179-9976876323168899999974981998475499-
Q gi|254780918|r 476 NKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGG-FDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADL- 553 (623)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGG-fDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v- 553 (623)
..+.+....+ ....+..+ ...-++||+.+.+-|- |.|. ..+||+.|+..+....-++.++|...-
T Consensus 148 --------~g~~~l~~~l-~~~~~~~~-~W~klyRr~~l~~n~irF~~g---i~~ED~~f~~~~l~~A~rI~~i~~~lY~ 214 (329)
T PRK10073 148 --------TGPDWLRMAL-SSRRWTHV-VWMGVYRRDFIVKNNIKFEPG---LHHQDIPWTTEVMFNALRVRYTEQSLYK 214 (329)
T ss_pred --------CCHHHHHHHH-HHCCCCHH-HHHHHHHHHHHHHCCCCCCCC---CCCCCHHHHHHHHHHCCEEEEECCCEEE
T ss_conf --------6399999987-41665145-898999999999869866999---8104668999999968959996784899
Q ss_pred --EEECCCCCCCCC
Q ss_conf --951773367766
Q gi|254780918|r 554 --YHDESRTRKYDH 565 (623)
Q Consensus 554 --~H~es~srg~~~ 565 (623)
.|-+|.|+...+
T Consensus 215 Yrir~~SIs~~~~~ 228 (329)
T PRK10073 215 YYLHNTSVSRLPRQ 228 (329)
T ss_pred EEECCCCCCCCCCC
T ss_conf 89789977578865
No 47
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.96 E-value=9.3e-29 Score=194.46 Aligned_cols=195 Identities=18% Similarity=0.244 Sum_probs=138.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCC--EEEEEECCCCCHHHHHHHHHHHHHHC-CCEEEEECCCCCCHHHHHHH
Q ss_conf 9789997475898889999999998288997--48999877578067999999988757-98899980888856489999
Q gi|254780918|r 67 PLISVIMPVYKIKKEWLEMAIESVRSQIYSH--WELCIAEDCSGDIETVSLLKKYANMD-SRIKVVFRAKNGHISAASNS 143 (623)
Q Consensus 67 P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~--~EliivdD~S~d~~~~~~l~~~~~~d-~ri~~~~~~~n~g~~~a~N~ 143 (623)
|.||||||+||. ++.|++||+|+.+|+||+ +|+|+|||+|++ .+.+.++++.... .++..+....++|.+.|+|.
T Consensus 1 P~vsViIPa~NE-~~vI~~ti~sl~~~~YP~~~~evivv~d~s~~-~t~~~~~~~~~~~~~~~~~~~~~~~~gK~~alN~ 78 (241)
T cd06427 1 PVYTILVPLYKE-AEVLPQLIASLSALDYPRSKLDVKLLLEEDDE-ETIAAARALRLPSIFRVVVVPPSQPRTKPKACNY 78 (241)
T ss_pred CEEEEEEECCCC-HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCH-HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 949999966898-89999999999967999761799999889996-8999999857876708999638988746999999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHH-CCCCCCCCCCCEEECCCCCEEEECCCCCCC----H-----HHHCCC
Q ss_conf 999659989999769875273207999999873-247554202220675898365422566789----6-----674147
Q gi|254780918|r 144 AAQLATSEWLALLDHDDLLHPTALYYVADAINN-NPNAEIIYSDEDKINENQIRSGPYFKYDFN----P-----ELFHVH 213 (623)
Q Consensus 144 ~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~-~p~~~~iYsDe~~i~~~g~~~~p~fkp~~~----~-----~~l~s~ 213 (623)
|++.++||||+++|+|+.+.|++|..++..+.+ .|.+.++.+.....+.......-.+--+|. . ..+.+.
T Consensus 79 al~~a~gd~v~~~DAD~~~~p~~L~~~v~~f~~~~~~v~~v~~~~~~~n~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 158 (241)
T cd06427 79 ALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLP 158 (241)
T ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCE
T ss_conf 99961588599978655649779999999998579855777331674589998899988999999999999999966993
Q ss_pred -CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEE
Q ss_conf -85431457689999971887898773027413678864248752200684227
Q gi|254780918|r 214 -NMITHLGVYRTETFKKIGGFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVLY 266 (623)
Q Consensus 214 -nyi~~~~~~rr~~~~~iGgf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vLy 266 (623)
++.|...+|||++++++|||++. ...+|+||.+|+.+++ .+|..++.+.|
T Consensus 159 ~~~~G~~~~~Rr~~l~~vGg~~~~-~~tED~dl~~rl~~~G--~ri~~~~~~~~ 209 (241)
T cd06427 159 IPLGGTSNHFRTDVLRELGGWDPF-NVTEDADLGLRLARAG--YRTGVLNSTTL 209 (241)
T ss_pred EECCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHCC--CEEEECCCCEE
T ss_conf 433872687799999980999887-6464799999999869--94985375442
No 48
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.96 E-value=2.6e-29 Score=197.80 Aligned_cols=169 Identities=24% Similarity=0.333 Sum_probs=126.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCE-EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99747589888999999999828899748999877578067999999988757988-99980888856489999999659
Q gi|254780918|r 71 VIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRI-KVVFRAKNGHISAASNSAAQLAT 149 (623)
Q Consensus 71 Iiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri-~~~~~~~n~g~~~a~N~~l~~a~ 149 (623)
||||+||. +++|.+||+|+++|||+++||||+||+|+| ++.+.++++...+++. .++....|+|.+.|+|.|++.|+
T Consensus 1 ViIp~~N~-~~~l~~~l~sl~~Q~~~~~eIivvdd~S~d-~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~N~g~~~a~ 78 (180)
T cd06423 1 IIVPAYNE-EAVIERTIESLLALDYPKLEVIVVDDGSTD-DTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAK 78 (180)
T ss_pred EEEEECCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCH-HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCC
T ss_conf 09997797-899999999998189998189999899975-7899999986217971898447776779999752510267
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEE----ECCCCCCCH-----HHHCCCCC-CCHH
Q ss_conf 9899997698752732079999998732475542022206758983654----225667896-----67414785-4314
Q gi|254780918|r 150 SEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSG----PYFKYDFNP-----ELFHVHNM-ITHL 219 (623)
Q Consensus 150 Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~----p~fkp~~~~-----~~l~s~ny-i~~~ 219 (623)
||||++||+|+++.|++|..++..+.++|++.++.+.-...+....... ..+...+.. ..+....+ .|.+
T Consensus 79 ~d~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 158 (180)
T cd06423 79 GDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSALGGVLVLSGAF 158 (180)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEE
T ss_conf 55798743872008569999999998795989998579854699878999998998877566666787659950678559
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 57689999971887898773027
Q gi|254780918|r 220 GVYRTETFKKIGGFREKFEGAQD 242 (623)
Q Consensus 220 ~~~rr~~~~~iGgf~~~~~~~~D 242 (623)
++|||++|+++|||||.+- ++|
T Consensus 159 ~~~rr~~~e~vGGfDe~~~-~ED 180 (180)
T cd06423 159 GAFRREALREVGGWDEDTL-TED 180 (180)
T ss_pred EEEEHHHHHHCCCCCCCCC-CCC
T ss_conf 9988999998399999998-899
No 49
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.96 E-value=3.9e-28 Score=190.66 Aligned_cols=166 Identities=16% Similarity=0.209 Sum_probs=134.2
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHC---
Q ss_conf 97475898889999999998288997489998775780679999999887579889998088885648999999965---
Q gi|254780918|r 72 IMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQLA--- 148 (623)
Q Consensus 72 iip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l~~a--- 148 (623)
|||+||. .++|.+||+||.+|+|++.|||||||+|+| .+.++++++.. ..+++++.+++|.|.++++|.|++.|
T Consensus 2 VI~t~N~-~~~l~~~L~Sl~~q~~~~~eIiVVDn~StD-~t~~~l~~~~~-~~~v~~i~~~~N~G~a~~~N~Gi~~a~~~ 78 (202)
T cd04185 2 VVVTYNR-LDLLKECLDALLAQTRPPDHIIVIDNASTD-GTAEWLTSLGD-LDNIVYLRLPENLGGAGGFYEGVRRAYEL 78 (202)
T ss_pred EEEECCC-HHHHHHHHHHHHHCCCCCCEEEEEECCCCC-CHHHHHHHHCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 9900288-899999999998277999889999794987-61665300035-66689985688873278999999988755
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 99899997698752732079999998732475542022206758983654225667896674147854314576899999
Q gi|254780918|r 149 TSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYDFNPELFHVHNMITHLGVYRTETFK 228 (623)
Q Consensus 149 ~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~~~~~~l~s~nyi~~~~~~rr~~~~ 228 (623)
.++||+++|+|..+.|++|+.+++++.. ++.+++.+. .++.++ ++.| +++||++++
T Consensus 79 ~~d~v~~ld~D~~~~~~~l~~l~~~~~~-~~~~~~~~~--~~~~~~-------------------~F~g--~l~~r~v~~ 134 (202)
T cd04185 79 GYDWIWLMDDDAIPDPDALEKLLAYADK-DNPQFLAPL--VLDPDG-------------------SFVG--VLISRRVVE 134 (202)
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHC-CCCEEEEEE--EECCCC-------------------CEEE--EEEEHHHHH
T ss_conf 9818999899875492299999998657-997799978--984799-------------------9899--988899999
Q ss_pred HHCCCCCCCC-CCCCCHHHHHHHHCCCCCCEEECCCCEEE
Q ss_conf 7188789877-30274136788642487522006842279
Q gi|254780918|r 229 KIGGFREKFE-GAQDYDLVLRFLENIDLSQIIHIPRVLYH 267 (623)
Q Consensus 229 ~iGgf~~~~~-~~~D~Dl~lR~~~~~~~~~i~hip~vLy~ 267 (623)
++|+|||.|- ..+|.||++|+...+ .+| .+|+....
T Consensus 135 ~vG~fde~~f~~~eD~D~~~R~~~~G--~~i-~~p~a~v~ 171 (202)
T cd04185 135 KIGLPDKEFFIWGDDTEYTLRASKAG--PGI-YVPDAVVV 171 (202)
T ss_pred HHCCCCHHHCCCCCHHHHHHHHHHCC--CCE-EECCEEEE
T ss_conf 75899768667382999999999749--969-97788999
No 50
>PRK10018 predicted glycosyl transferase; Provisional
Probab=99.96 E-value=1e-26 Score=181.98 Aligned_cols=217 Identities=19% Similarity=0.267 Sum_probs=137.4
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHH-HHHHHHHHCCCCCEEEEECCCCCCHHHHH
Q ss_conf 88881699995377455699999876420797515799714899816899-99999863088827997578887338898
Q gi|254780918|r 321 NPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTF-LYLQKIQKKYPNLRVITDNTHPFNYSRIN 399 (623)
Q Consensus 321 ~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~-~~l~~~~~~~~~~~~i~~~~~~~n~s~~~ 399 (623)
.++|+||||||+||..+++.+||+|+++|| |+++|||||||+|+|.+.. .+... ...++++++.... +.|.+++.
T Consensus 2 ~~~PlVSVIIP~yN~~~~l~~aI~SVl~Qt-y~n~EiIIVDD~Std~~~~~~~~~~--~~d~RI~~i~~~~-N~G~~~aR 77 (279)
T PRK10018 2 KDNPLISIYMPTWNRQQLAIRAIKSVLRQD-YSNWEMIIVDDCSTSWEQLQQYVTA--LNDPRITYIHNDI-NSGACAVR 77 (279)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCHHHHHHHHHH--CCCCCEEEEECCC-CCCHHHHH
T ss_conf 999809999947997799999999999579-9898999998999987999999997--5899889998789-78899999
Q ss_pred HHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHHC-CCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCC
Q ss_conf 98786148974744058827828168899887742-89816995376646767567787044132540678656643225
Q gi|254780918|r 400 NNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIAS-QPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKH 478 (623)
Q Consensus 400 N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~-~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~ 478 (623)
|.|++.|+||||+|||+|- ...|+.||..+++.+ .+..+.+.+. ... -++.++..+ .+. ..
T Consensus 78 N~gi~~A~GeyIafLDsDD-~~~PnkLE~ql~~~~~~~~~a~~~~~-----~~i--~~~~~~~~~-----~~~----~~- 139 (279)
T PRK10018 78 NQAIMLAQGEYITGIDDDD-EWTPNRLSVFLAHKQQLVTHAFLYAN-----DYV--CQGEVYSQP-----ASL----PL- 139 (279)
T ss_pred HHHHHHHCCCEEEEECCCC-CCCCCHHHHHHHHHHHCCCEEEEECC-----CEE--ECCCEEECC-----CCC----CC-
T ss_conf 9999995699899999876-87856699999614422763587324-----568--538258446-----665----46-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHC-CCEEEECCCEEEEEEC
Q ss_conf 655557644222233444441110110204388889871799976876323168899999974-9819984754999517
Q gi|254780918|r 479 HKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEA-GYRNVWTPHADLYHDE 557 (623)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~-G~r~v~~P~a~v~H~e 557 (623)
.+. .-........+++. |..+++++..|.+. ||||. ++ .++|.|+.+|+... |-.....-.+.++|.+
T Consensus 140 ~~~-----~~~~~~~~~~~n~v---gn~vf~~~~~~k~~-~FDe~-l~-~~qDyD~wlRL~~~yG~~~~~~~~~~~~~~~ 208 (279)
T PRK10018 140 YPK-----SPYSRRLFYKRNII---GNQVFTWAWRFKEC-LFDTE-LK-AAQDYDIFLRMVVEYGEPWKVEEATQILHIN 208 (279)
T ss_pred CCC-----CCCCHHHHHCCCCC---CCEEEEEHHHHHHH-CCCCC-CC-CCCCHHHHHHHHHHHCCCEECCCCCEEEEEC
T ss_conf 675-----54338877504543---63676677876561-25456-77-4210999999999859734427763799962
Q ss_pred -CCCCCCCCCCHHHHH
Q ss_conf -733677668999999
Q gi|254780918|r 558 -SRTRKYDHEDPAKMI 572 (623)
Q Consensus 558 -s~srg~~~~~~~k~~ 572 (623)
+.+|-. .++.+..
T Consensus 209 ~~~~~it--~~~~~~~ 222 (279)
T PRK10018 209 HGEMQIT--SSPKKFS 222 (279)
T ss_pred CCCCEEC--CCHHHHH
T ss_conf 8843003--7588887
No 51
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.96 E-value=1e-27 Score=188.05 Aligned_cols=189 Identities=19% Similarity=0.243 Sum_probs=129.4
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCC--CEEEEEECCCCCHHHHHHHHHHHHH-HCCCEEEEECC--CCCCHHHHHHHHH
Q ss_conf 99747589888999999999828899--7489998775780679999999887-57988999808--8885648999999
Q gi|254780918|r 71 VIMPVYKIKKEWLEMAIESVRSQIYS--HWELCIAEDCSGDIETVSLLKKYAN-MDSRIKVVFRA--KNGHISAASNSAA 145 (623)
Q Consensus 71 Iiip~yn~~~~~L~~~i~Si~~Qty~--~~EliivdD~S~d~~~~~~l~~~~~-~d~ri~~~~~~--~n~g~~~a~N~~l 145 (623)
||||+||. ++.|.+||+|+++|+|| ++|||||||+|+|. |.++++.+.. .+++++++... .++|.+.|+|.|+
T Consensus 1 ViIP~~Ne-~~~i~~~l~sl~~q~yp~~~~EVivvdd~StD~-T~~i~~~~~~~~~~~~~~~~~~~~~~~gk~~aln~g~ 78 (229)
T cd04192 1 VVIAARNE-AENLPRLLQSLSALDYPKEKFEVILVDDHSTDG-TVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAI 78 (229)
T ss_pred EEEEECCC-HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC-HHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHH
T ss_conf 59998898-899999999999578998868999998979716-7999999970569745530246777725999999999
Q ss_pred HHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCC-CCCCHH--H-----HCCCCC--
Q ss_conf 965998999976987527320799999987324755420222067589836542256-678966--7-----414785--
Q gi|254780918|r 146 QLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFK-YDFNPE--L-----FHVHNM-- 215 (623)
Q Consensus 146 ~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fk-p~~~~~--~-----l~s~ny-- 215 (623)
+.|+||||+|+|+|+++.|++|..++..+... ..+++.+........+. -..+. -+|... . -...++
T Consensus 79 ~~a~ge~i~~lDaD~~~~~~~l~~~~~~~~~~-~~~~v~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (229)
T cd04192 79 KAAKGDWIVTTDADCVVPSNWLLTFVAFIQKE-QIGLVAGPVIYFKGKSL--LAKFQRLDWLSLLGLIAGSFGLGKPFMC 155 (229)
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHCC-CCEEEECCEEEECCCCH--HHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 86467769985676565876999999997489-94799887410079999--9999999999999999998506995585
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCC-C-CCCCHHHHHHHHCCCCCCEEEC--CCCEE
Q ss_conf 43145768999997188789877-3-0274136788642487522006--84227
Q gi|254780918|r 216 ITHLGVYRTETFKKIGGFREKFE-G-AQDYDLVLRFLENIDLSQIIHI--PRVLY 266 (623)
Q Consensus 216 i~~~~~~rr~~~~~iGgf~~~~~-~-~~D~Dl~lR~~~~~~~~~i~hi--p~vLy 266 (623)
.|..++|||++++++|||++... . .+|.+++.|+.... .+|..+ |+.+.
T Consensus 156 ~G~~~~~rr~~~~~vGGfd~~~~~~~~Dd~~~~~~l~~~g--~ki~y~~~p~a~v 208 (229)
T cd04192 156 NGANMAYRKEAFFEVGGFEGNDHIASGDDELLLAKVASKY--PKVAYLKNPEALV 208 (229)
T ss_pred ECCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC--CEEEEEECCCEEE
T ss_conf 0621532399999809988999863699999999998089--9799983798699
No 52
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.95 E-value=6e-28 Score=189.47 Aligned_cols=190 Identities=23% Similarity=0.240 Sum_probs=141.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCE--EEEEECCCCCHHHHHHHHHHHH-HHCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 99974758988899999999982889974--8999877578067999999988-75798899980888856489999999
Q gi|254780918|r 70 SVIMPVYKIKKEWLEMAIESVRSQIYSHW--ELCIAEDCSGDIETVSLLKKYA-NMDSRIKVVFRAKNGHISAASNSAAQ 146 (623)
Q Consensus 70 SIiip~yn~~~~~L~~~i~Si~~Qty~~~--EliivdD~S~d~~~~~~l~~~~-~~d~ri~~~~~~~n~g~~~a~N~~l~ 146 (623)
||||+.||.....|-++|.||++.|.++. |||+|||+|++++....+..+. ...+.|++++++++.|+..|+|.|++
T Consensus 1 SVII~f~NE~~s~LlRtv~Svl~rTP~~LL~EIILVDD~S~~~~l~~~l~~~~~~~~~~Vkvir~~~r~GlirAR~~Ga~ 80 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGAR 80 (299)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 98999947808889998999986399889368999967999524312479999861894599987765324999877688
Q ss_pred HCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCC---------CEEE----ECCC--CCCCHHH--
Q ss_conf 659989999769875273207999999873247554202220675898---------3654----2256--6789667--
Q gi|254780918|r 147 LATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQ---------IRSG----PYFK--YDFNPEL-- 209 (623)
Q Consensus 147 ~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g---------~~~~----p~fk--p~~~~~~-- 209 (623)
.|+||+++|||++....++||+.+++.+.+++..- +-.--|.|+.+. .+.. ..|+ |....+.
T Consensus 81 ~A~G~vlvFLDsH~e~~~gWLePLL~~I~en~~~V-v~P~Id~Id~~tf~y~~~~~~~~g~f~W~l~f~w~~~~~~~~~~ 159 (299)
T cd02510 81 AATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTV-VCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRR 159 (299)
T ss_pred HHCCCEEEEECCCEEECCCHHHHHHHHHHHCCCEE-EECCCCEECCCCCEEECCCCCEEEEECCEEEEEEECCCHHHHCC
T ss_conf 73486699936872314677899999987299889-97873128788823641688635898022478883299789434
Q ss_pred ------HCCCCCCCHHHHHHHHHHHHHCCCCCCCC--CCCCCHHHHHHHHCCCCCCEEECC
Q ss_conf ------41478543145768999997188789877--302741367886424875220068
Q gi|254780918|r 210 ------FHVHNMITHLGVYRTETFKKIGGFREKFE--GAQDYDLVLRFLENIDLSQIIHIP 262 (623)
Q Consensus 210 ------l~s~nyi~~~~~~rr~~~~~iGgf~~~~~--~~~D~Dl~lR~~~~~~~~~i~hip 262 (623)
+++--+.|.++++.|+.|.++||||++++ |+++.||.+|+...++ +|..+|
T Consensus 160 ~~~~~p~~sP~maGGlfAi~r~~F~elG~yD~gm~~WGgEn~ElSfRvW~CGG--~i~~vP 218 (299)
T cd02510 160 ESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGG--SIEIVP 218 (299)
T ss_pred CCCCCCEECCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHCCC--EEEEEE
T ss_conf 48897676540012158988999997479787773147411132302021286--599854
No 53
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=9.7e-27 Score=182.08 Aligned_cols=113 Identities=35% Similarity=0.517 Sum_probs=56.0
Q ss_pred CCEEEEEECCCCHH-HHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHH
Q ss_conf 81699995377455-69999987642079751579971489981689999999863088-82799757888733889898
Q gi|254780918|r 324 PLVSIIIPTYNHHH-LLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYP-NLRVITDNTHPFNYSRINNN 401 (623)
Q Consensus 324 P~VSIIIp~~n~~~-~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~-~~~~i~~~~~~~n~s~~~N~ 401 (623)
|+||||||+||... .+++|++|+.++ +||++||+||||+|+| ++.+.+++...+.+ +++++.....+.+-+++.|.
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~-dyp~~evivv~d~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~gK~~al~~ 131 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQ-DYPRYEVIVVDDGSTD-ETYEILEELGAEYGPNFRVIYPEKKNGGKAGALNN 131 (439)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHC-CCCCCEEEEEECCCCC-HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 726999836999867899999999827-8987159999689983-09999999974437857999624455524899998
Q ss_pred HHHHCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEE
Q ss_conf 78614897474405882782816889988774289816
Q gi|254780918|r 402 ATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVG 439 (623)
Q Consensus 402 g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG 439 (623)
|...++||+++++|+|+. ..||||.+|+..+.++.++
T Consensus 132 ~l~~~~~d~V~~~DaD~~-~~~d~l~~~~~~f~~~~~~ 168 (439)
T COG1215 132 GLKRAKGDVVVILDADTV-PEPDALRELVSPFEDPPVG 168 (439)
T ss_pred HHHHCCCCEEEEECCCCC-CCCHHHHHHHHHHCCCCEE
T ss_conf 875057888999838877-8711999999973258804
No 54
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.94 E-value=9.8e-26 Score=175.93 Aligned_cols=203 Identities=16% Similarity=0.137 Sum_probs=137.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHC---CCEEEEECCC-C---C
Q ss_conf 458978999747589888999999999828899-748999877578067999999988757---9889998088-8---8
Q gi|254780918|r 64 QNKPLISVIMPVYKIKKEWLEMAIESVRSQIYS-HWELCIAEDCSGDIETVSLLKKYANMD---SRIKVVFRAK-N---G 135 (623)
Q Consensus 64 ~~~P~iSIiip~yn~~~~~L~~~i~Si~~Qty~-~~EliivdD~S~d~~~~~~l~~~~~~d---~ri~~~~~~~-n---~ 135 (623)
...|.||||||++| ++..|.+||+|+++|+|| ++|+|++||+|+| .|.+++++++..+ +|++++..+. . .
T Consensus 37 ~~~P~VSViIPARN-Ee~~I~~~L~Sl~~Q~yp~~~EvivvDD~StD-~T~~i~~~~~~~~~~~~rl~vi~~~~lP~gW~ 114 (384)
T TIGR03469 37 EAWPAVVAVVPARN-EADVIGECVTSLLEQDYPGKLHVILVDDHSTD-GTADIARAAARAYGRGDRLTVVSGQPLPPGWS 114 (384)
T ss_pred CCCCCEEEEECCCC-CHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC-HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
T ss_conf 78997699976898-78889999999983789997599999569986-39999999974468886389825898998765
Q ss_pred CHHHHHHHHHHHC-----CCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCC--H-
Q ss_conf 5648999999965-----9989999769875273207999999873247554202220675898365422566789--6-
Q gi|254780918|r 136 HISAASNSAAQLA-----TSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYDFN--P- 207 (623)
Q Consensus 136 g~~~a~N~~l~~a-----~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~~~--~- 207 (623)
|-..|++.|++.| +|||++|+|+|..+.|+++++++..+.+ ++.+++-.-- .....+. .+...-|.+. .
T Consensus 115 GK~~A~~qg~~~A~~~~~~ge~llF~DADv~~~p~~l~~~v~~~~~-~~~~lvS~~p-~~~~~~~-~e~l~~p~~~~~~~ 191 (384)
T TIGR03469 115 GKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARA-EGLDLVSLMV-RLRCESF-WEKLLIPAFVFFFQ 191 (384)
T ss_pred CHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHH-CCCCEEECCC-CEECCCH-HHHHHHHHHHHHHH
T ss_conf 1188999999998525787757999457500087699999999997-5998473335-4036978-99999999999999
Q ss_pred -----HHHC---C--CCCCCHHHHHHHHHHHHHCCCCC-CCCCCCCCHHHHHHHHCCCCCCEEECCCCEEEEEECC
Q ss_conf -----6741---4--78543145768999997188789-8773027413678864248752200684227995338
Q gi|254780918|r 208 -----ELFH---V--HNMITHLGVYRTETFKKIGGFRE-KFEGAQDYDLVLRFLENIDLSQIIHIPRVLYHWRMHD 272 (623)
Q Consensus 208 -----~~l~---s--~nyi~~~~~~rr~~~~~iGgf~~-~~~~~~D~Dl~lR~~~~~~~~~i~hip~vLy~~R~~~ 272 (623)
.... + ..-.|.+.++||+.++++|||.. .-...+|.+|.-++.+++....+..-.+ +...|+.+
T Consensus 192 ~~~p~~~~~~~~~~~~~a~G~~~l~rR~ay~~iGGh~av~~~v~DD~~Lar~ik~~G~~v~~~~g~~-~vs~rmY~ 266 (384)
T TIGR03469 192 KLYPFRWVNDPRRRTAAAAGGCILIRREALERIGGIAAIRGALIDDCTLAAAVKRSGGRIWLGLAAR-TRSLRPYD 266 (384)
T ss_pred HHCCHHHHCCCCCCCHHCCCCEEEEEHHHHHHCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEECCCC-EEEEECCC
T ss_conf 9664887539653300115865897899998748888883373328999999997599289862653-37973478
No 55
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.94 E-value=1.4e-25 Score=175.01 Aligned_cols=184 Identities=18% Similarity=0.239 Sum_probs=131.4
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCC-
Q ss_conf 9747589888999999999828899748999877578067999999988757988999808888564899999996599-
Q gi|254780918|r 72 IMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQLATS- 150 (623)
Q Consensus 72 iip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l~~a~G- 150 (623)
||++||...+.|.+||+|+.+|++ ||||||++|+|. +.+.++ ...++|+++.+++|.|.+++.|.|++.|.+
T Consensus 2 VIVtYn~~~~~l~~~L~sl~~q~~---eIiVVDN~S~d~-~~~~~~---~~~~~v~~i~~~~N~G~a~g~N~Gi~~a~~~ 74 (237)
T cd02526 2 VVVTYNPDLSKLKELLAALAEQVD---KVVVVDNSSGND-IELRLR---LNSEKIELIHLGENLGIAKALNIGIKAALEN 74 (237)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCC---EEEEEECCCCHH-HHHHHH---HCCCCEEEEECCCCCCHHHHCCCCCHHHHCC
T ss_conf 998738989999999997663799---899996988902-899998---6199869998999778588727430334117
Q ss_pred --CEEEEECCCCCCCCCHHHHHHHHHH---HCCCCCCCCCCCEEECCCCCEEEECCC--------CCCCHHHHCCCCC-C
Q ss_conf --8999976987527320799999987---324755420222067589836542256--------6789667414785-4
Q gi|254780918|r 151 --EWLALLDHDDLLHPTALYYVADAIN---NNPNAEIIYSDEDKINENQIRSGPYFK--------YDFNPELFHVHNM-I 216 (623)
Q Consensus 151 --e~i~~lD~DD~l~p~~L~~~~~~l~---~~p~~~~iYsDe~~i~~~g~~~~p~fk--------p~~~~~~l~s~ny-i 216 (623)
|||++||+|.++.|++|..+...+. +++++.++-.. ..+..+....+.+. ..+.........+ +
T Consensus 75 ~~d~i~~ln~D~~~~~~~l~~l~~~~~~~~~~~~vg~~~p~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPR--IIDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLI 152 (237)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEE--EECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEE
T ss_conf 97789993575655905999999999852227988999717--9868998004542112533223544247844604303
Q ss_pred CHHHHHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHHCCCCCCEEECCCCEE
Q ss_conf 314576899999718878987-73027413678864248752200684227
Q gi|254780918|r 217 THLGVYRTETFKKIGGFREKF-EGAQDYDLVLRFLENIDLSQIIHIPRVLY 266 (623)
Q Consensus 217 ~~~~~~rr~~~~~iGgf~~~~-~~~~D~Dl~lR~~~~~~~~~i~hip~vLy 266 (623)
+..+++||++++++|||||.| -..+|.||++|+..++ .+|..+|....
T Consensus 153 ~sg~lir~~~~~~vG~fde~fF~y~ED~Dl~~R~~~~G--~~i~~~p~a~v 201 (237)
T cd02526 153 TSGSLISLEALEKVGGFDEDLFIDYVDTEWCLRARSKG--YKIYVVPDAVL 201 (237)
T ss_pred ECCEEEEHHHHHHHCCCCHHHCCCCCHHHHHHHHHHCC--CCEEEECCEEE
T ss_conf 01437789999985799689779371999999999859--97999898899
No 56
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=99.93 E-value=1.3e-24 Score=169.08 Aligned_cols=199 Identities=19% Similarity=0.262 Sum_probs=147.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC--EEEEEECCCCCHHHH-------------HHHHHHHHHHCCCEEE
Q ss_conf 4589789997475898889999999998288997--489998775780679-------------9999998875798899
Q gi|254780918|r 64 QNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSH--WELCIAEDCSGDIET-------------VSLLKKYANMDSRIKV 128 (623)
Q Consensus 64 ~~~P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~--~EliivdD~S~d~~~-------------~~~l~~~~~~d~ri~~ 128 (623)
++.|.|+|.||+||.|.+.+++|+.+.++.+||+ .++.|.|||++|+.. +.-++++++. -.++|
T Consensus 128 ~~~PtVDV~IPtYNEp~~vv~~Tl~aa~~ldYP~~kl~V~vLDDG~td~~~~~~~~~~~~~~~rR~e~~~la~~-lGv~Y 206 (713)
T TIGR03030 128 EEWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRK-LGVNY 206 (713)
T ss_pred HHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HCCEE
T ss_conf 01895348964899998999999999986899985466999979897100234301233334413999999998-09865
Q ss_pred EECCCCCCH-HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEE-ECCCCCCC
Q ss_conf 980888856-4899999996599899997698752732079999998732475542022206758983654-22566789
Q gi|254780918|r 129 VFRAKNGHI-SAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSG-PYFKYDFN 206 (623)
Q Consensus 129 ~~~~~n~g~-~~a~N~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~-p~fkp~~~ 206 (623)
+.+++|.|. ++|.|.|++.++||||+.+|+|-+..|+.|.+.+..+.++|...+|-+-+...+++....+ ..++.-.+
T Consensus 207 itR~~n~hAKAGNLN~AL~~t~GelIaVfDAD~vP~~~FL~~tvg~F~~DpklalVQTPq~F~N~Dp~~~NL~~~~~~p~ 286 (713)
T TIGR03030 207 ITRPRNVHAKAGNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPN 286 (713)
T ss_pred EECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCEEEECCCHHHHCCHHHCCCCC
T ss_conf 53798788761678999873698789996788786689999998987029976999489756898878741112036750
Q ss_pred -HHHH-----------CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEE
Q ss_conf -6674-----------14785431457689999971887898773027413678864248752200684227
Q gi|254780918|r 207 -PELF-----------HVHNMITHLGVYRTETFKKIGGFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVLY 266 (623)
Q Consensus 207 -~~~l-----------~s~nyi~~~~~~rr~~~~~iGgf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vLy 266 (623)
.+++ -+..+.|...++||+.++++|||.++- ..||.+..+|+..++. +-+.++++|.
T Consensus 287 e~~~Fy~~iq~g~d~wnaaf~cGS~aV~RR~AL~eIGGf~~~t-ITED~~Tsl~Lh~~Gw--~s~Yl~~~la 355 (713)
T TIGR03030 287 ENELFYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIAGET-VTEDAETALKLHRRGW--NSAYLDRPLI 355 (713)
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCC-EEHHHHHHHHHHHCCC--EEEEECCHHH
T ss_conf 4778899985564668807982617987499999807977760-4010899999997798--3898574876
No 57
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=2.4e-24 Score=167.43 Aligned_cols=196 Identities=25% Similarity=0.379 Sum_probs=145.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC-CCEEEEEC-CCCCCHHHHHHH
Q ss_conf 8978999747589888999999999828899748999877578067999999988757-98899980-888856489999
Q gi|254780918|r 66 KPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMD-SRIKVVFR-AKNGHISAASNS 143 (623)
Q Consensus 66 ~P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d-~ri~~~~~-~~n~g~~~a~N~ 143 (623)
.|+|||+||+||.+.+.++++++|+.+|+||+.|+++|||+|+| ++.+++++..... ++++++.. ..|+|.+.|.|.
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~gK~~al~~ 131 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTD-ETYEILEELGAEYGPNFRVIYPEKKNGGKAGALNN 131 (439)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCC-HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 87269998369998678999999998278987159999689983-09999999974437857999624455524899998
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCC-------CCCCHHH-----H-
Q ss_conf 99965998999976987527320799999987324755420222067589836542256-------6789667-----4-
Q gi|254780918|r 144 AAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFK-------YDFNPEL-----F- 210 (623)
Q Consensus 144 ~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fk-------p~~~~~~-----l- 210 (623)
|+..++||+|+++|+|..+.|++|.+++..+...+...++..- .+...........+ ..+.... .
T Consensus 132 ~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g 209 (439)
T COG1215 132 GLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTP--RIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGG 209 (439)
T ss_pred HHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECC--EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8750578889998388778711999999973258804999556--32145563017788999999999988899998589
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEE
Q ss_conf 147854314576899999718878987730274136788642487522006842279
Q gi|254780918|r 211 HVHNMITHLGVYRTETFKKIGGFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVLYH 267 (623)
Q Consensus 211 ~s~nyi~~~~~~rr~~~~~iGgf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vLy~ 267 (623)
....+.|...++||+.++++||+++.. .++|.++.+|+..+ +-++.++|+++.+
T Consensus 210 ~~~~~~G~~~~~rr~aL~~~g~~~~~~-i~ED~~lt~~l~~~--G~~~~~~~~~~~~ 263 (439)
T COG1215 210 LISFLSGSSSAFRRSALEEVGGWLEDT-ITEDADLTLRLHLR--GYRVVYVPEAIVW 263 (439)
T ss_pred CEEECCCCHHEEEHHHHHHHCCCCCCE-EECCHHHHHHHHHC--CCEEEEECCCEEE
T ss_conf 746526721303399999827857754-54159999999988--9889994574573
No 58
>PRK10063 predicted glycosyl transferase; Provisional
Probab=99.93 E-value=1.1e-23 Score=163.38 Aligned_cols=195 Identities=18% Similarity=0.217 Sum_probs=130.6
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHCC--CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 16999953774556999998764207--9751579971489981689999999863088827997578887338898987
Q gi|254780918|r 325 LVSIIIPTYNHHHLLKICLESIYHKT--TYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNA 402 (623)
Q Consensus 325 ~VSIIIp~~n~~~~l~~cl~Sl~~~t--~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g 402 (623)
+||||+|++|..+.|++||+||..|+ .+.++|.||||++|+|+ |.+++++...+. +.+++.+... +-|. ++|.|
T Consensus 2 ~iSIITv~~N~~~~l~~Tl~Sv~~~~~~~~~~~E~IIIDGgStDg-T~~ii~~~~~~~-~~~~iSEpD~-GIYd-AmNKG 77 (248)
T PRK10063 2 LLSVVTVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDG-TREYLENLNGIF-NLRFVSEPDN-GIYD-AMNKG 77 (248)
T ss_pred EEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC-HHHHHHHCCCCC-CEEEEEECCC-CCHH-HHHHH
T ss_conf 699999947498999999999999861878986999997939611-799999706666-6799993898-8088-98851
Q ss_pred HHHCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCC-EEEECCEEECCCCCCCCCCCCCCC
Q ss_conf 8614897474405882782816889988774289816995376646767567787-044132540678656643225655
Q gi|254780918|r 403 TLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSK-RLQHGGVIMGINNIAGHKNKHHKA 481 (623)
Q Consensus 403 ~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~-~iqhaG~v~g~~~~~~~~~~~~~~ 481 (623)
++.|+||||+|||+|- .+.++-++.+...+...+..++++-.++.. .++ .+..
T Consensus 78 I~~A~Gd~I~FLNsdD-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~r-------------------- 131 (248)
T PRK10063 78 IAMAQGKFALFLNSGD-IFHQDAALFVRQLKRQKDNAMITGDALLDF-----GDGHKIKR-------------------- 131 (248)
T ss_pred HHHCCCCEEEEECCCC-CCCCCHHHHHHHHHHCCCCEEEEEEEEEEC-----CCCCEEEE--------------------
T ss_conf 9877888899983886-648476999999871799869994379981-----89868986--------------------
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEE-ECCC
Q ss_conf 5576442-2223344444111011020438888987179997687632316889999997498199847549995-1773
Q gi|254780918|r 482 RCSVPNY-QAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYH-DESR 559 (623)
Q Consensus 482 ~~~~~~~-~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H-~es~ 559 (623)
...++. ........ -..+++||++|++ +|||+. +.++ +|.||++|+...|++..|.|...+.= .+|.
T Consensus 132 -~~~~~~~~~~~~p~~-------Hqa~f~rr~~~~~-~~fD~~-y~ia-aDydl~lRl~~~g~~~~yl~~vl~~~~~GG~ 200 (248)
T PRK10063 132 -KAKPGWYIYHSLPAS-------HQAIFFPVSGLKK-WRYDLE-YKVS-SDYALAARLYKAGYAFKKLNGLVSEFSMGGV 200 (248)
T ss_pred -CCCCHHHHCCCCCCC-------CCCEEEEHHHHHC-CCCCCC-CCCH-HHHHHHHHHHHCCCCEEECCCEEEEECCCCC
T ss_conf -037815633899999-------8887888789627-889998-8742-6799999999769978974813598029988
Q ss_pred C
Q ss_conf 3
Q gi|254780918|r 560 T 560 (623)
Q Consensus 560 s 560 (623)
|
T Consensus 201 S 201 (248)
T PRK10063 201 S 201 (248)
T ss_pred C
T ss_conf 2
No 59
>pfam00535 Glycos_transf_2 Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.
Probab=99.92 E-value=3.8e-25 Score=172.35 Aligned_cols=112 Identities=35% Similarity=0.558 Sum_probs=85.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99974758988899999999982889974899987757806799999998875798899980888856489999999659
Q gi|254780918|r 70 SVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQLAT 149 (623)
Q Consensus 70 SIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l~~a~ 149 (623)
|||||+||. +++|.+||+|+++|+++++|+|||||+|+| ++.++++++....++++++.++.|.|.+.++|.|++.|+
T Consensus 1 sIiip~yN~-~~~l~~~l~sl~~q~~~~~eiiivDd~S~d-~t~~~~~~~~~~~~~v~~~~~~~~~g~~~a~n~g~~~a~ 78 (168)
T pfam00535 1 SVIIPTYNE-EKYLEECLESLLNQTYPNFEIIVVDDGSTD-GTVEIAEEYAKKDPRIRVIRLEENLGKAAARNAGLKLAT 78 (168)
T ss_pred CEEEEECCC-HHHHHHHHHHHHCCCCCCEEEEEEECCCCC-HHHCEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 999996188-899999999997387998599999899981-010012100134676002442024574688889999679
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 98999976987527320799999987324755420
Q gi|254780918|r 150 SEWLALLDHDDLLHPTALYYVADAINNNPNAEIIY 184 (623)
Q Consensus 150 Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iY 184 (623)
|+||+++|+|+.+.|++|+.+++.+.+++ .++++
T Consensus 79 ~~~v~~lD~D~~~~~~~l~~~~~~~~~~~-~~~~~ 112 (168)
T pfam00535 79 GDYILFLDADDEVAPDWLEKLVELLEKNG-ADIVI 112 (168)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHCCC-CEEEE
T ss_conf 98599985899868769999999998399-76999
No 60
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=99.92 E-value=2.4e-23 Score=161.27 Aligned_cols=194 Identities=24% Similarity=0.325 Sum_probs=144.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 89789997475898889999999998288997489998775780679999999887579889998088885648999999
Q gi|254780918|r 66 KPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAA 145 (623)
Q Consensus 66 ~P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l 145 (623)
.|.+|+||++||. .+++.+||+|+.+|+|+..++++||++|+|. +.+.++... .++++++.+.+|.|++++.|.|+
T Consensus 2 ~~~i~~iiv~yn~-~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~-~~~~~~~~~--~~~v~~i~~~~NlG~agg~n~g~ 77 (305)
T COG1216 2 MPKISIIIVTYNR-GEDLVECLASLAAQTYPDDVIVVVDNGSTDG-SLEALKARF--FPNVRLIENGENLGFAGGFNRGI 77 (305)
T ss_pred CCCEEEEEEEECC-HHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-HHHHHHHHC--CCCEEEEECCCCCEEHHHHHHHH
T ss_conf 8735999999688-8899999999971768763599807999732-288877605--88689998898867088888999
Q ss_pred HHCCCC---EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCC-----C-EEECCCC---------CEEEECCC--CCC
Q ss_conf 965998---99997698752732079999998732475542022-----2-0675898---------36542256--678
Q gi|254780918|r 146 QLATSE---WLALLDHDDLLHPTALYYVADAINNNPNAEIIYSD-----E-DKINENQ---------IRSGPYFK--YDF 205 (623)
Q Consensus 146 ~~a~Ge---~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsD-----e-~~i~~~g---------~~~~p~fk--p~~ 205 (623)
+.|.++ |+++|++|..+.|++|+.+.+++.+++.+.++.+- + ..++..+ ....+.++ ++.
T Consensus 78 ~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (305)
T COG1216 78 KYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAPDL 157 (305)
T ss_pred HHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCC
T ss_conf 99862898489998388687906999999999868987796346548875323443456444332200024333444433
Q ss_pred CH-HHHCCCCCCCHHHHHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHHCCCCCCEEECCCCEE
Q ss_conf 96-674147854314576899999718878987-73027413678864248752200684227
Q gi|254780918|r 206 NP-ELFHVHNMITHLGVYRTETFKKIGGFREKF-EGAQDYDLVLRFLENIDLSQIIHIPRVLY 266 (623)
Q Consensus 206 ~~-~~l~s~nyi~~~~~~rr~~~~~iGgf~~~~-~~~~D~Dl~lR~~~~~~~~~i~hip~vLy 266 (623)
+. +...+ ...|.++++|+++++++||||++| .-.+|.|+.+|+...+ .++.-+|....
T Consensus 158 ~~~~~~~~-~~~G~~~li~~~~~~~vG~~de~~F~y~eD~D~~~R~~~~G--~~i~~~p~a~i 217 (305)
T COG1216 158 SSYLEVVA-SLSGACLLIRREAFEKVGGFDERFFIYYEDVDLCLRARKAG--YKIYYVPDAII 217 (305)
T ss_pred CCCCHHHH-HCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC--CCEEEEECEEE
T ss_conf 34201333-22561799749999984798768721006879999999759--96998004599
No 61
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.91 E-value=9.8e-24 Score=163.66 Aligned_cols=195 Identities=18% Similarity=0.191 Sum_probs=133.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 89997475898889999999998288997489998775780679999999887579889998088885648999999965
Q gi|254780918|r 69 ISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQLA 148 (623)
Q Consensus 69 iSIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l~~a 148 (623)
||||||+||.+.+.|++||+|++.|+ ++|+|||||+|+|. +.+++++... ++++++ ...+|.|.+.|+|.|++.|
T Consensus 2 VsviIPayNE~~~il~~~l~s~~~~~--~~eiivV~D~s~d~-~~~~~~~~~~-~~~~~v-~~~~~~GK~~Aln~~l~~a 76 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQK--PLEIIVVTDGDDEP-YLSILSQTVK-YGGIFV-ITVPHPGKRRALAEGIRHV 76 (235)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHCCC--CCEEEEEECCCCCC-HHHHHHHHCC-CCCEEE-EECCCCCHHHHHHHHHHHC
T ss_conf 79999522697689999999998089--99899998899972-8999998634-897899-9889899899999999975
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCC-C---CHH------HHCCCCC-CC
Q ss_conf 99899997698752732079999998732475542022206758983654225667-8---966------7414785-43
Q gi|254780918|r 149 TSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYD-F---NPE------LFHVHNM-IT 217 (623)
Q Consensus 149 ~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~-~---~~~------~l~s~ny-i~ 217 (623)
+||||+++|+|.++.|++|..++..+. +|++.+|-+........+.... .+... + +.. .+.+..+ .|
T Consensus 77 ~~d~v~~~DaD~~~~~~~l~~l~~~f~-d~~vg~V~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~G 154 (235)
T cd06434 77 TTDIVVLLDSDTVWPPNALPEMLKPFE-DPKVGGVGTNQRILRPRDSKWS-FLAAEYLERRNEEIRAAMSYDGGVPCLSG 154 (235)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHC-CCCEEEEEEEEEEECCCCCHHH-HHHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 778899985885358889999999648-9987999703886469998999-99999999999999999985598689637
Q ss_pred HHHHHHHHHHHHHCCCCCC----C-----CCCCCCHHHHHHHHCCCCCCEEECCCCEEEEEECCC
Q ss_conf 1457689999971887898----7-----730274136788642487522006842279953388
Q gi|254780918|r 218 HLGVYRTETFKKIGGFREK----F-----EGAQDYDLVLRFLENIDLSQIIHIPRVLYHWRMHDN 273 (623)
Q Consensus 218 ~~~~~rr~~~~~iGgf~~~----~-----~~~~D~Dl~lR~~~~~~~~~i~hip~vLy~~R~~~~ 273 (623)
.+.+|||+++.+++.+.+. + ...+|.||.+|+..++ .++...|+.... -.++.
T Consensus 155 ~~~~~Rr~~l~~~~~~~~~~~~~~~g~~~~~~ED~~lt~r~~~~G--~r~~y~~~a~v~-~~~p~ 216 (235)
T cd06434 155 RTAAYRTEILKDFLFLEEFTNETFMGRRLNAGDDRFLTRYVLSHG--YKTVYQYTSEAY-TETPE 216 (235)
T ss_pred HHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHCC--CEEEEECCCEEE-EECCC
T ss_conf 079999999985330101230002777776426999999999869--989992477899-97868
No 62
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.91 E-value=1.4e-23 Score=162.80 Aligned_cols=197 Identities=17% Similarity=0.158 Sum_probs=139.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC--EEEEECCCCCC---HH
Q ss_conf 45897899974758988899999999982889974899987757806799999998875798--89998088885---64
Q gi|254780918|r 64 QNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSR--IKVVFRAKNGH---IS 138 (623)
Q Consensus 64 ~~~P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~r--i~~~~~~~n~g---~~ 138 (623)
+..|.||||+|++|. +..|.+||+|+.+|+||++|+|+++|.|+|+ +.++++++...+|+ ++++..++..| ..
T Consensus 38 ~~~P~VSil~P~~~e-~~~l~~~L~sl~~qdYP~~evi~~vd~~~D~-a~~i~~~l~~~~p~~~~~~v~~~~~~g~n~K~ 115 (373)
T TIGR03472 38 RAWPPVSVLKPLHGD-EPELYENLASFCRQDYPGFQMLFGVQDPDDP-ALAVVRRLRADFPDADIDLVIDARRHGPNRKV 115 (373)
T ss_pred CCCCCEEEEEECCCC-CHHHHHHHHHHHHCCCCCEEEEEEECCCCCC-HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH
T ss_conf 999980799807998-3049999999986789982899997899997-89999999986899987998588767887899
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCC--EE-EECCCCCCCHHHH-----
Q ss_conf 899999996599899997698752732079999998732475542022206758983--65-4225667896674-----
Q gi|254780918|r 139 AASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQI--RS-GPYFKYDFNPELF----- 210 (623)
Q Consensus 139 ~a~N~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~--~~-~p~fkp~~~~~~l----- 210 (623)
.+++.+++.|+||++++.|+|..+.|++|..++..+ ++|+++++-+---.....+. +. .+.+-..+-+..+
T Consensus 116 ~~L~~~~~~a~~dil~~~DaD~~~~p~~L~~lVa~l-~~~~vglVt~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 194 (373)
T TIGR03472 116 SNLINMLPHARHDILVIADSDISVGPDYLRQVVAPL-ADPDVGLVTCLYRGRPVPGFWSRLGAMGINHNFLPSVMVARAL 194 (373)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH-HCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999986278889998799752848999999997-4899775832564678887899999999999888889999761
Q ss_pred CC-CCCCCHHHHHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHCCCCCCEEECCCCE
Q ss_conf 14-785431457689999971887898-77302741367886424875220068422
Q gi|254780918|r 211 HV-HNMITHLGVYRTETFKKIGGFREK-FEGAQDYDLVLRFLENIDLSQIIHIPRVL 265 (623)
Q Consensus 211 ~s-~nyi~~~~~~rr~~~~~iGgf~~~-~~~~~D~Dl~lR~~~~~~~~~i~hip~vL 265 (623)
.. ...+|.+.++||+.++++|||+.- -.-++|+.+..++.+.+ .++.-.|.+.
T Consensus 195 ~~~~~~~G~~~~~RR~~l~~iGG~~~~~~~laED~~L~~~i~~~G--~rv~l~~~~v 249 (373)
T TIGR03472 195 GRARFCFGATMALRRATLEAIGGLAALAHHLADDYWLGELVRALG--LRVVLAPVVV 249 (373)
T ss_pred CCCCCCCCCCCEEEHHHHHHCCCHHHHHCCCHHHHHHHHHHHHCC--CCEEECCHHH
T ss_conf 465335674011359999974797777215256899999999669--9889656266
No 63
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=99.91 E-value=1.1e-22 Score=157.29 Aligned_cols=243 Identities=17% Similarity=0.286 Sum_probs=161.5
Q ss_pred CCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCC--EEEEEECCCCCCHH-------------HHHHHHHHHHCCCCCE
Q ss_conf 8888169999537745-569999987642079751--57997148998168-------------9999999863088827
Q gi|254780918|r 321 NPPPLVSIIIPTYNHH-HLLKICLESIYHKTTYSS--FEVIIIDNLSDDSK-------------TFLYLQKIQKKYPNLR 384 (623)
Q Consensus 321 ~~~P~VSIIIp~~n~~-~~l~~cl~Sl~~~t~y~~--~EiivVdn~S~d~~-------------t~~~l~~~~~~~~~~~ 384 (623)
+.-|.|+|.||+||+. +.+++++.+..+ .+||+ ++|+|.|||++|.. -+..+++++++. ++.
T Consensus 128 ~~~PtVDV~IPtYNEp~~vv~~Tl~aa~~-ldYP~~kl~V~vLDDG~td~~~~~~~~~~~~~~~rR~e~~~la~~l-Gv~ 205 (713)
T TIGR03030 128 EEWPTVDVFIPTYNEDLEIVATTVLAAKN-MDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKL-GVN 205 (713)
T ss_pred HHCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCE
T ss_conf 01895348964899998999999999986-8999854669999798971002343012333344139999999980-986
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHH-CCCCEEEEEE-EEECCCCCCCCCCCEEEEC
Q ss_conf 9975788873388989878614897474405882782816889988774-2898169953-7664676756778704413
Q gi|254780918|r 385 VITDNTHPFNYSRINNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIA-SQPQVGAVGA-RLWYRRKKLWKRSKRLQHG 462 (623)
Q Consensus 385 ~i~~~~~~~n~s~~~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~-~~~~vG~Vg~-~ll~~~~~~~~~d~~iqha 462 (623)
++....+...-|...|.|+++++||||+.+|.|-.+ .++||++.++++ ++|++|.|+. .-+|. +|..-+.-
T Consensus 206 YitR~~n~hAKAGNLN~AL~~t~GelIaVfDAD~vP-~~~FL~~tvg~F~~DpklalVQTPq~F~N------~Dp~~~NL 278 (713)
T TIGR03030 206 YITRPRNVHAKAGNINNALKHTDGELILIFDADHVP-TRDFLQRTVGWFVEDPKLFLVQTPHFFVS------PDPIERNL 278 (713)
T ss_pred EEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCC-CHHHHHHHHHHHHCCCCEEEEECCEEEEC------CCHHHHCC
T ss_conf 553798788761678999873698789996788786-68999999898702997699948975689------88787411
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHH
Q ss_conf 25406786566432256555576442222334444---411101102043888898717999768763231688999999
Q gi|254780918|r 463 GVIMGINNIAGHKNKHHKARCSVPNYQAFAMHFTH---SISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRIL 539 (623)
Q Consensus 463 G~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~ 539 (623)
| ......+ ....++. ..+..+ |-....|.|.++||+++++||||+++... ||.+.++|+.
T Consensus 279 ~----~~~~~p~---------e~~~Fy~-~iq~g~d~wnaaf~cGS~aV~RR~AL~eIGGf~~~tIT---ED~~Tsl~Lh 341 (713)
T TIGR03030 279 G----TFRRMPN---------ENELFYG-LIQDGNDFWNAAFFCGSAAVLRREALDEIGGIAGETVT---EDAETALKLH 341 (713)
T ss_pred H----HHCCCCC---------HHHHHHH-HHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCEE---HHHHHHHHHH
T ss_conf 1----2036750---------4778899-98556466880798261798749999980797776040---1089999999
Q ss_pred HCCCEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-----HHHCCCCCCCCCCCCC
Q ss_conf 749819984754999517733677668999999999999999988388-----8414898464646566
Q gi|254780918|r 540 EAGYRNVWTPHADLYHDESRTRKYDHEDPAKMIVFQEACQYLQKRWKK-----IIEKDPCYNPNLSLLH 603 (623)
Q Consensus 540 ~~G~r~v~~P~a~v~H~es~srg~~~~~~~k~~~~~~~~~~~~~rW~~-----~~~~Dp~ynpnlsl~~ 603 (623)
.+||+.+|.+.... .|.- |+...-+..+ +.||.. +...-|...++|++.+
T Consensus 342 ~~Gw~s~Yl~~~la-------~GLa---Petl~~~i~Q----R~RWa~G~~Qi~~~~nPl~~~GL~~~Q 396 (713)
T TIGR03030 342 RRGWNSAYLDRPLI-------AGLA---PETLSGHIGQ----RIRWAQGMMQIFRLDNPLLKRGLSFPQ 396 (713)
T ss_pred HCCCEEEEECCHHH-------CCCC---CCCHHHHHHH----HHHHHCCHHHHHHHCCCCCCCCCCHHH
T ss_conf 77983898574876-------6779---4289999999----998844558787403875678999899
No 64
>pfam00535 Glycos_transf_2 Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.
Probab=99.89 E-value=5.6e-23 Score=159.05 Aligned_cols=167 Identities=26% Similarity=0.425 Sum_probs=118.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 99995377455699999876420797515799714899816899999998630888279975788873388989878614
Q gi|254780918|r 327 SIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHA 406 (623)
Q Consensus 327 SIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a 406 (623)
|||||+||+.+.|++||+||.+|+ ++++|||||||+|+| +|.+.++.+..++++++++... .+.|++++.|.|++.|
T Consensus 1 sIiip~yN~~~~l~~~l~sl~~q~-~~~~eiiivDd~S~d-~t~~~~~~~~~~~~~v~~~~~~-~~~g~~~a~n~g~~~a 77 (168)
T pfam00535 1 SVIIPTYNEEKYLEECLESLLNQT-YPNFEIIVVDDGSTD-GTVEIAEEYAKKDPRIRVIRLE-ENLGKAAARNAGLKLA 77 (168)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-CCCEEEEEEECCCCC-HHHCEEEEECCCCCCCEEEEEE-CCCCCHHHHHHHHHHC
T ss_conf 999996188899999999997387-998599999899981-0100121001346760024420-2457468888999967
Q ss_pred CCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEE-EEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 89747440588278281688998877428981699-53766467675677870441325406786566432256555576
Q gi|254780918|r 407 KGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAV-GARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSV 485 (623)
Q Consensus 407 ~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~V-g~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~~~ 485 (623)
+|||++|+|+|.. ..|+||+.|+..++.+++++| |.+..... .... .+ ..... ....
T Consensus 78 ~~~~v~~lD~D~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~-----------~~~~~--~~~~ 135 (168)
T pfam00535 78 TGDYILFLDADDE-VAPDWLEKLVELLEKNGADIVIGSRVVIFG------ETRL--DG-----------RALRF--ELLL 135 (168)
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHHCCCCEEEEEEEEEECC------CCCC--CC-----------HHHHH--HHHH
T ss_conf 9985999858998-687699999999983997699998686789------6254--51-----------26888--9999
Q ss_pred CCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHC
Q ss_conf 442222334444411101102043888898717
Q gi|254780918|r 486 PNYQAFAMHFTHSISAVTGACMVMSKKCFMHVG 518 (623)
Q Consensus 486 ~~~~~~~~~~~~~~savtgacllirr~~f~~iG 518 (623)
.................+++|+++||+++++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 168 (168)
T pfam00535 136 LLGKLGDRSLGLKVLFLIGSNALYRREALEELL 168 (168)
T ss_pred HHHHHHHHHHCCCCEEECCCEEEEEHHHHHHHC
T ss_conf 999999998589963716652899899999659
No 65
>KOG3736 consensus
Probab=99.89 E-value=7.5e-23 Score=158.28 Aligned_cols=270 Identities=17% Similarity=0.208 Sum_probs=178.9
Q ss_pred CCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCC-CEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH
Q ss_conf 88888169999537745-56999998764207975-15799714899816899999998630888279975788873388
Q gi|254780918|r 320 PNPPPLVSIIIPTYNHH-HLLKICLESIYHKTTYS-SFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSR 397 (623)
Q Consensus 320 ~~~~P~VSIIIp~~n~~-~~l~~cl~Sl~~~t~y~-~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~ 397 (623)
.++.|.+||||+.+|.. ..|.+.+.|+.+.|... --|||+||+.|+.......|++..+.+..+++++.... -|.-+
T Consensus 138 ~~~Lp~~Svii~f~nE~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~~~l~~~Ld~y~k~~~~v~i~r~~~R-~GLIr 216 (578)
T KOG3736 138 SDKLPTTSVIIIFHNEAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDRDHLKDKLEEYVKRFSKVRILRTKKR-EGLIR 216 (578)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHEEEEEHCCCCHHHEEEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCH-HHHHH
T ss_conf 21368874389971577732130577314028765848999960675134444566999874245257763200-14688
Q ss_pred HHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECC---EEECCCCCCCC
Q ss_conf 989878614897474405882782816889988774289816995376646767567787044132---54067865664
Q gi|254780918|r 398 INNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGG---VIMGINNIAGH 474 (623)
Q Consensus 398 ~~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG---~v~g~~~~~~~ 474 (623)
+.+.|++.|+||.+.|||+.+|+ +.+||+.|++......-.+|.|.+--- .+.+.++-. ...|-..+..+
T Consensus 217 ARl~GA~~A~geVL~FLDsHcE~-n~gWLePLL~~I~~~r~tvv~PvID~I------d~~tf~y~~~~~~~rGgFdW~l~ 289 (578)
T KOG3736 217 ARLLGASMATGEVLTFLDSHCEV-NVGWLEPLLARIAEDRKTVVCPVIDVI------DDNTFEYEKQSELMRGGFDWELT 289 (578)
T ss_pred HHHHHHHHHHCHHEEEEECCEEE-ECCCCHHHHHHHHHCCCEEEECEEEEE------CCCCCEECCCCCCCEEEEECCEE
T ss_conf 88664343000010323154467-517555888886425723650207741------47671003267433013402025
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEE
Q ss_conf 32256555576442222334444411101102043888898717999768763231688999999749819984754999
Q gi|254780918|r 475 KNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLY 554 (623)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~ 554 (623)
+.....+.....-.. ....+-.-.+.-|.-++|.|+.|.++|++|+..-..++|.++|++|+++.|.++...|.++|-
T Consensus 290 -f~w~~lP~~~~~~~~-~~t~PirsPtMaGglFAI~r~yF~eiG~yD~gMdiwGGENlElSfrvWqCGG~lei~PCSrVG 367 (578)
T KOG3736 290 -FKWERLPLPEEKRRE-LPTDPIRSPTMAGGLFAIDRKYFGELGSYDEGMDIWGGENLELSFRVWQCGGRLEIVPCSRVG 367 (578)
T ss_pred -EEECCCCCCHHHCCC-CCCCCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCEEEEEEECCCCEEEECCCCCEE
T ss_conf -784438854666044-888775784327744786388875505766635000711202457995008768751765004
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCC
Q ss_conf 5177336776689999999999999999883888414898-4646465
Q gi|254780918|r 555 HDESRTRKYDHEDPAKMIVFQEACQYLQKRWKKIIEKDPC-YNPNLSL 601 (623)
Q Consensus 555 H~es~srg~~~~~~~k~~~~~~~~~~~~~rW~~~~~~Dp~-ynpnlsl 601 (623)
|..-...-. ..|.......++...+.+-|.+..+.--| ++|++..
T Consensus 368 HifRk~~pY--~~p~~~~~~~~N~~RlAeVWmDeyK~~~y~~~P~~~~ 413 (578)
T KOG3736 368 HIFRKRKPY--TFPDGTDTATRNLKRLAEVWMDEYKEQFYKRMPGLRN 413 (578)
T ss_pred EEEECCCCC--CCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 543057776--5887342542023343224128899888761876456
No 66
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.87 E-value=7.1e-22 Score=152.28 Aligned_cols=170 Identities=15% Similarity=0.138 Sum_probs=112.5
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEC--CCCCCHHHHHHHHHHH
Q ss_conf 99953774556999998764207975157997148998168999999986308882799757--8887338898987861
Q gi|254780918|r 328 IIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDN--THPFNYSRINNNATLH 405 (623)
Q Consensus 328 IIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~--~~~~n~s~~~N~g~~~ 405 (623)
||||+||..+.+.+||+||.++ ++++|||||||+|+| .|.+.++... ..++++++... ....|-+.+.|.|+.+
T Consensus 1 VlIPa~NEe~~I~~ti~sl~~~--~~~~eIivvdDgS~D-~T~~~~~~~~-~~~~~~vi~~~~~~~~~GK~~ALN~al~~ 76 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLRN--KPNFLVLVIDDASDD-DTAGIVRLAI-TDSRVHLLRRHLPNARTGKGDALNAAYDQ 76 (191)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CCCCEEEEEECCCCC-CHHHHHHHHH-HCCCEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 9873078789999999999738--999689999799992-0999999983-08987999954776678515788889998
Q ss_pred -----------CCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCC
Q ss_conf -----------489747440588278281688998877428981699537664676756778704413254067865664
Q gi|254780918|r 406 -----------AKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGH 474 (623)
Q Consensus 406 -----------a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~ 474 (623)
+++|+|+++|.|+.+ +|++|..|+.++.+|+||+|++.+-+.+.....- .++|..- +
T Consensus 77 ~~~~~~~~~~~~~~eii~v~DAD~~~-~~d~L~~~~~~f~dp~v~~Vqg~~~~~N~~~n~l-tr~q~~E----------~ 144 (191)
T cd06436 77 IRQILIEEGADPERVIIAVIDADGRL-DPNALEAVAPYFSDPRVAGTQSRVRMYNRHKNLL-TILQDLE----------F 144 (191)
T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCC-CHHHHHHHHHHHCCCCEEEEECCCEECCCCCCHH-HHHHHHH----------H
T ss_conf 66432000135664189995378732-8899999999725988159943403268887899-9999999----------9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCH
Q ss_conf 322565555764422223344444111011020438888987179997
Q gi|254780918|r 475 KNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDE 522 (623)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE 522 (623)
. .+.... ..+ +... ..-.+.|.++++||++++++||||+
T Consensus 145 ~-~~~~~~--~~~----r~~~--g~~~~~G~~~~~Rr~al~~vGG~~~ 183 (191)
T cd06436 145 F-IIIAAT--QSL----RALT--GTVGLGGNGQFMRLSALDGLIGEEP 183 (191)
T ss_pred H-HHHHHH--HHH----HHHC--CEEEECCEEEEEHHHHHHHCCCCCC
T ss_conf 9-999999--989----9867--9289673388886999997679987
No 67
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.87 E-value=1.1e-21 Score=151.15 Aligned_cols=160 Identities=19% Similarity=0.189 Sum_probs=114.1
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECC---CCCCHHHHHHHHHHH
Q ss_conf 99747589888999999999828899748999877578067999999988757988999808---888564899999996
Q gi|254780918|r 71 VIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRA---KNGHISAASNSAAQL 147 (623)
Q Consensus 71 Iiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~---~n~g~~~a~N~~l~~ 147 (623)
||||+||. ++.|.+||+|+++|+ +++||+||||+|+| .|.++++.+. .+++++++... .++|-+.|+|.|+..
T Consensus 1 VlIPa~NE-e~~I~~ti~sl~~~~-~~~eIivvdDgS~D-~T~~~~~~~~-~~~~~~vi~~~~~~~~~GK~~ALN~al~~ 76 (191)
T cd06436 1 VLVPCLNE-EAVIQRTLASLLRNK-PNFLVLVIDDASDD-DTAGIVRLAI-TDSRVHLLRRHLPNARTGKGDALNAAYDQ 76 (191)
T ss_pred CEEEECCC-HHHHHHHHHHHHCCC-CCCEEEEEECCCCC-CHHHHHHHHH-HCCCEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 98730787-899999999997389-99689999799992-0999999983-08987999954776678515788889998
Q ss_pred -----------CCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEE----CCCCCCCH-----
Q ss_conf -----------5998999976987527320799999987324755420222067589836542----25667896-----
Q gi|254780918|r 148 -----------ATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGP----YFKYDFNP----- 207 (623)
Q Consensus 148 -----------a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p----~fkp~~~~----- 207 (623)
+++|+|+++|+|..+.|++|..++..+ .+|+++++-+.....+........ .|-.-++.
T Consensus 77 ~~~~~~~~~~~~~~eii~v~DAD~~~~~d~L~~~~~~f-~dp~v~~Vqg~~~~~N~~~n~ltr~q~~E~~~~~~~~~~~r 155 (191)
T cd06436 77 IRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYF-SDPRVAGTQSRVRMYNRHKNLLTILQDLEFFIIIAATQSLR 155 (191)
T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH-CCCCEEEEECCCEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66432000135664189995378732889999999972-59881599434032688878999999999999999999899
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 6741478543145768999997188789
Q gi|254780918|r 208 ELFHVHNMITHLGVYRTETFKKIGGFRE 235 (623)
Q Consensus 208 ~~l~s~nyi~~~~~~rr~~~~~iGgf~~ 235 (623)
..+.+..+-|...+|||++++++|||++
T Consensus 156 ~~~g~~~~~G~~~~~Rr~al~~vGG~~~ 183 (191)
T cd06436 156 ALTGTVGLGGNGQFMRLSALDGLIGEEP 183 (191)
T ss_pred HHCCEEEECCEEEEEHHHHHHHCCCCCC
T ss_conf 8679289673388886999997679987
No 68
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=99.87 E-value=6.9e-21 Score=146.22 Aligned_cols=112 Identities=21% Similarity=0.288 Sum_probs=64.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHH----CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC-CEEEEECCCCCCHHHHHHHHH
Q ss_conf 9974758988899999999982----88997489998775780679999999887579-889998088885648999999
Q gi|254780918|r 71 VIMPVYKIKKEWLEMAIESVRS----QIYSHWELCIAEDCSGDIETVSLLKKYANMDS-RIKVVFRAKNGHISAASNSAA 145 (623)
Q Consensus 71 Iiip~yn~~~~~L~~~i~Si~~----Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~-ri~~~~~~~n~g~~~a~N~~l 145 (623)
||||+|| +++.|..+|+++.+ ....+||||||||||+| .|.++++++...++ .++++.++.|.|.+.|.+.|+
T Consensus 1 IiIP~yN-E~~~I~~~i~~i~~~~~~~~~~~~eIivVddgS~D-~T~~i~~~~~~~~~~~~~vi~~~~n~G~g~A~~~G~ 78 (211)
T cd04188 1 VVIPAYN-EEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKD-GTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGM 78 (211)
T ss_pred CEEEECC-CHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC-CHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHH
T ss_conf 0999247-88889999999999986336998389999899971-879999999741786599996588888048999999
Q ss_pred HHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9659989999769875273207999999873247554202
Q gi|254780918|r 146 QLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYS 185 (623)
Q Consensus 146 ~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYs 185 (623)
..|+|+||+++|+|....|..+..+++.+.. .+.++|.+
T Consensus 79 ~~a~~d~i~~~DaD~~~~~~~i~~l~~~~~~-~~~d~V~G 117 (211)
T cd04188 79 LAARGDYILFADADLATPFEELEKLEEALKT-SGYDIAIG 117 (211)
T ss_pred HHHHCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEE
T ss_conf 9600485567768974078899999999984-89819999
No 69
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.86 E-value=3.6e-21 Score=147.96 Aligned_cols=207 Identities=16% Similarity=0.205 Sum_probs=134.1
Q ss_pred EEEECCCC-HHHHHHHHHHHHHCCCCC----------CEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHH
Q ss_conf 99953774-556999998764207975----------1579971489981689999999863088827997578887338
Q gi|254780918|r 328 IIIPTYNH-HHLLKICLESIYHKTTYS----------SFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYS 396 (623)
Q Consensus 328 IIIp~~n~-~~~l~~cl~Sl~~~t~y~----------~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s 396 (623)
||||.||+ .+.+.+||+||+++ +|| ++|++||+||+.+.... +.+. ....+.
T Consensus 1 V~ip~YNE~~~~l~~tl~Si~~~-~yp~~~~~~~~~~~~~v~vi~Dg~~~~n~g-------K~~s---------~~~~~~ 63 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKN-DYPFCARGGDSWKKIVVCVIFDGAIKKNRG-------KRDS---------QLWFFN 63 (244)
T ss_pred CEEECCCCCHHHHHHHHHHHHHC-CCCCCCCCCCCCCEEEEEEEECCCCCCCCC-------CHHH---------HHHHHH
T ss_conf 98847889879999999999975-897434577777628999997788767663-------1237---------999999
Q ss_pred HHHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHH-CCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCC
Q ss_conf 8989878614897474405882782816889988774-289816995376646767567787044132540678656643
Q gi|254780918|r 397 RINNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIA-SQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHK 475 (623)
Q Consensus 397 ~~~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~-~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~ 475 (623)
+.|.|+..+++|+++++|+|+. ++|++|..|+..+ .+|+||+|++.+.-...... +-..+|+- .+.
T Consensus 64 -al~~~~~~~~~e~v~~vDaDt~-~~~~al~~lv~~f~~dp~vgaV~G~i~v~n~~~~-~l~~~q~~----------EY~ 130 (244)
T cd04190 64 -YFCRVLFPDDPEFILLVDADTK-FDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQG-PLVMYQVF----------EYA 130 (244)
T ss_pred -HHHHHHHHCCCEEEEEEECCCC-CCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCC-HHHHHHHH----------HHH
T ss_conf -9998875059809999907998-1857999999999639983788766896578888-89999999----------999
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHH-----------------HCCHHHHHHH
Q ss_conf 22565555764422223-34444411101102043888898717999768763-----------------2316889999
Q gi|254780918|r 476 NKHHKARCSVPNYQAFA-MHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPV-----------------VFSDIDLCLR 537 (623)
Q Consensus 476 ~~~~~~~~~~~~~~~~~-~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~-----------------~~eDvDlclR 537 (623)
.. + ..... .....-+..++|+|-++|++++.+++|.....+.. ..||.+||++
T Consensus 131 ~~-~--------~~~r~~~s~~G~v~~~pGa~s~yR~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~laEDr~Lt~~ 201 (244)
T cd04190 131 IS-H--------WLDKAFESVFGFVTCLPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTL 201 (244)
T ss_pred HH-H--------HHHHHHHHHCCCEEECCCCHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHHHHHHCCCCHHCHHHHHHH
T ss_conf 99-9--------98899998679989717812552099887347874441100223331013332111102110999999
Q ss_pred HHHCCCE--EEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9974981--9984754999517733677668999999999999999988388
Q gi|254780918|r 538 ILEAGYR--NVWTPHADLYHDESRTRKYDHEDPAKMIVFQEACQYLQKRWKK 587 (623)
Q Consensus 538 ~~~~G~r--~v~~P~a~v~H~es~srg~~~~~~~k~~~~~~~~~~~~~rW~~ 587 (623)
+.++||+ ++|+|.|.++-. -|+....+.+ -+.||..
T Consensus 202 l~~~g~~~~~~y~p~A~~~T~----------~P~t~~~l~k----QR~RW~~ 239 (244)
T cd04190 202 LLKAGPKRKYLYVPGAVAETD----------VPETFVELLS----QRRRWIN 239 (244)
T ss_pred HHHHCCCCEEEECCCCEEEEE----------CCCCHHHHHH----HHHHHHH
T ss_conf 998288734887457389998----------9828999999----9888750
No 70
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.85 E-value=1.3e-20 Score=144.47 Aligned_cols=103 Identities=14% Similarity=0.243 Sum_probs=54.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCC--EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 997475898889999999998288997--489998775780679999999887579889998088885648999999965
Q gi|254780918|r 71 VIMPVYKIKKEWLEMAIESVRSQIYSH--WELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQLA 148 (623)
Q Consensus 71 Iiip~yn~~~~~L~~~i~Si~~Qty~~--~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l~~a 148 (623)
|+||+||. ++.|.+||+|+++|+||. +|+++|||+|+| .|.++++++. ..+.....+.+.|-+.|+|.|++.+
T Consensus 1 VlIPa~NE-e~vI~~ti~~l~~~~YP~~~~eIivvdD~stD-~T~~~a~~~~---~~v~~~~~~~~~gK~~aln~~~~~~ 75 (183)
T cd06438 1 ILIPAHNE-EAVIGNTVRSLKAQDYPRELYRIFVVADNCTD-DTAQVARAAG---ATVLERHDPERRGKGYALDFGFRHL 75 (183)
T ss_pred CEEECCCC-HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC-HHHHHHHHCC---CEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 98820780-99999999999836899785699998489862-0899999839---9699973777776288999889998
Q ss_pred CC-----CEEEEECCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 99-----8999976987527320799999987324
Q gi|254780918|r 149 TS-----EWLALLDHDDLLHPTALYYVADAINNNP 178 (623)
Q Consensus 149 ~G-----e~i~~lD~DD~l~p~~L~~~~~~l~~~p 178 (623)
.| |+|+++|+|..+.|++|.+++..+...+
T Consensus 76 ~~~~~~~d~v~i~DAD~~~~~d~l~~~~~~f~~~~ 110 (183)
T cd06438 76 LNLADDPDAVVVFDADNLVDPNALEELNARFAAGA 110 (183)
T ss_pred HCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC
T ss_conf 42478866899955666779789999999983899
No 71
>TIGR01556 rhamnosyltran rhamnosyltransferase; InterPro: IPR006446 This subfamily is composed of sequences from the gamma proteobacteria that function as L-rhamnosyltransferases in the synthesis of their respective surface polysaccharides. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In Pseudomonas aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids . .
Probab=99.84 E-value=1.7e-19 Score=137.65 Aligned_cols=225 Identities=17% Similarity=0.236 Sum_probs=151.6
Q ss_pred CCCC----HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHC-
Q ss_conf 3774----55699999876420797515799714899816899999998630888279975788873388989878614-
Q gi|254780918|r 332 TYNH----HHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHA- 406 (623)
Q Consensus 332 ~~n~----~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a- 406 (623)
|||. .+.|.+.+.|+.+|.. .||+|||+|-.. ...-++....+..++.+|....+ -|.|++-|.|++.+
T Consensus 2 tfNPGdddl~~L~~l~~~l~~Q~~----~~i~vDN~~~s~-~~~~l~~~~~~~~~i~~i~ls~n-~GiA~AqN~Gl~~~~ 75 (291)
T TIGR01556 2 TFNPGDDDLEVLKELITSLKKQVD----KIIVVDNSSLSE-IRSELKELLAKKEKIKLISLSDN-EGIAAAQNLGLKASF 75 (291)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCE----EEEEEECCCCCC-CCHHHHHHHHHCCCEEEEECCCC-CCHHHHHHHHHHHHH
T ss_conf 548854789999999987652590----899997895433-20578999850077689963785-412889879999998
Q ss_pred --CCCEEEEECCCCEEECHHHHHHHHH----HHCCC--CEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCC
Q ss_conf --8974744058827828168899887----74289--816995376646767567787044132540678656643225
Q gi|254780918|r 407 --KGQYFCFLNNDTEVINGQWLSEMMG----IASQP--QVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKH 478 (623)
Q Consensus 407 --~geyilfLn~D~~v~~~~wL~~Ll~----~~~~~--~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~ 478 (623)
..++++|+|.|-. ..++.+++++. .++.. +|++|||..+........|- +.-.|- .. ...
T Consensus 76 ~~~~~~vlLlDqDS~-~~~~~~~~fl~~~~~~l~~~~~~~~~~GP~~~Dr~~~~~~~~--~~~~g~------~l-~~~-- 143 (291)
T TIGR01556 76 KKGVEKVLLLDQDSR-PAEDGVNKFLAKELKLLSEEKLQAVAVGPSFFDRKTSRRLPI--VKLKGN------LL-LKK-- 143 (291)
T ss_pred HCCCCEEEEEECCCC-CCHHHHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCEECCC--EEECCC------CC-EEE--
T ss_conf 738966888512784-320348999999988654226627998782577688705361--651266------20-025--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEECC
Q ss_conf 65555764422223344444111011020438888987179997687632316889999997498199847549995177
Q gi|254780918|r 479 HKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHDES 558 (623)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~es 558 (623)
...+. .......++.-.||+ ||++|+|+.+|-|||++| ..|=|++||+|++..|+.+...|++.+.|.-|
T Consensus 144 --~~~~~-----~~~~~~~~flIaSGt--li~~E~~~~~G~m~E~lF-IDyvDtEwslR~~~~g~~ly~~~d~~l~H~iG 213 (291)
T TIGR01556 144 --IKVDE-----KKTPVKTDFLIASGT--LIKKEVLKSVGMMDEELF-IDYVDTEWSLRALNYGIKLYIIPDIVLEHAIG 213 (291)
T ss_pred --EEECC-----CCCCEEEEEEEECHH--HHHHHHHHHCCCCCCCCC-CCEEHHHHHHHHHHCCCEEEEECCEEEEEEEC
T ss_conf --53238-----898358887861226--799999872576420332-13341536888887782488517568985306
Q ss_pred CCC---------CCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 336---------77668999999999999999988
Q gi|254780918|r 559 RTR---------KYDHEDPAKMIVFQEACQYLQKR 584 (623)
Q Consensus 559 ~sr---------g~~~~~~~k~~~~~~~~~~~~~r 584 (623)
-++ .....+|-+++...|+.-.+.++
T Consensus 214 ~~~v~~~~G~~~~i~~HsPlRrYY~~RN~~~~l~~ 248 (291)
T TIGR01556 214 DSKVRILGGLSKEIPKHSPLRRYYLFRNAILLLRK 248 (291)
T ss_pred CCEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 61675413420002567861368888503431100
No 72
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.84 E-value=2.7e-20 Score=142.60 Aligned_cols=173 Identities=16% Similarity=0.207 Sum_probs=125.4
Q ss_pred EEECCCCCCHHHHHHHHHHHHHC--CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 99747589888999999999828--8997489998775780679999999887579889998088885648999999965
Q gi|254780918|r 71 VIMPVYKIKKEWLEMAIESVRSQ--IYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQLA 148 (623)
Q Consensus 71 Iiip~yn~~~~~L~~~i~Si~~Q--ty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l~~a 148 (623)
||||+||. ++.|.++++++..+ .+.++|+|+|||+|+| .|.++++++...+++++++.++.|.|.+.|.+.|++.|
T Consensus 1 IiIP~yNE-~~~i~~~l~~i~~~~~~~~~~eiiiVddgS~D-~T~~i~~~~~~~~~~~~~i~~~~n~G~g~ai~~G~~~a 78 (185)
T cd04179 1 VVIPAYNE-EENIPELVERLLAVLEEGYDYEIIVVDDGSTD-GTAEIARELAARVPRVRVIRLSRNFGKGAAVRAGFKAA 78 (185)
T ss_pred CEEEECCC-HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC-CHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHC
T ss_conf 69984487-88999999999987535798799999899962-07888887642330499863245777058999888752
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCC------CCHHHHCCCC---CCCHH
Q ss_conf 99899997698752732079999998732475542022206758983654225667------8966741478---54314
Q gi|254780918|r 149 TSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYD------FNPELFHVHN---MITHL 219 (623)
Q Consensus 149 ~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~------~~~~~l~s~n---yi~~~ 219 (623)
+|+|++++|+|....|..+..+++.+.+. +.++|++.- ....+....|.++-= |-...+...+ +.|.+
T Consensus 79 ~~d~i~~~D~D~~~~~~~i~~~i~~~~~~-~~d~V~gsR--~~~~~~~~~~~~r~i~~~~~~~~~~~~~~~~i~D~~~g~ 155 (185)
T cd04179 79 RGDIVVTMDADLQHPPEDIPKLLEKLLEG-GADVVIGSR--FVRGGGAGMPLLRRLGSRLFNFLIRLLLGVRISDTQSGF 155 (185)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHC-CCEEEEEEE--ECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
T ss_conf 58889992799870999999999999978-985999997--608987677558999999999999999599985699874
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 57689999971887898773027413678
Q gi|254780918|r 220 GVYRTETFKKIGGFREKFEGAQDYDLVLR 248 (623)
Q Consensus 220 ~~~rr~~~~~iGgf~~~~~~~~D~Dl~lR 248 (623)
.+++|++++.+-......+-..|.+++.+
T Consensus 156 k~~~~~~~~~i~~~~~~~~f~~~~El~i~ 184 (185)
T cd04179 156 RLFRREVLEALLSLLESNGFEFGLELLVG 184 (185)
T ss_pred EEEEHHHHHHHHCCCCCCCCEEEEEEEEC
T ss_conf 99889999987530346891873025713
No 73
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=5.2e-20 Score=140.84 Aligned_cols=106 Identities=32% Similarity=0.543 Sum_probs=95.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 89789997475898889999999998288997489998775780679999999887579889998088885648999999
Q gi|254780918|r 66 KPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAA 145 (623)
Q Consensus 66 ~P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l 145 (623)
.|+||||||+||. +++|.+||+|+++|+|++||+|||||||+|. +.++++++....+++.....+.|.|++.++|.|+
T Consensus 2 ~~~isiiip~~n~-~~~l~~~l~s~~~q~~~~~eiivvdd~s~d~-t~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (291)
T COG0463 2 MPKVSVVIPTYNE-EEYLPEALESLLNQTYKDFEIIVVDDGSTDG-TTEIAIEYGAKDVRVIRLINERNGGLGAARNAGL 79 (291)
T ss_pred CCEEEEEEECCCC-HHHHHHHHHHHHHHCCCCCEEEEEECCCCCC-HHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 9639999954878-8889999999997207984899996999886-7999998444455178852656769999999999
Q ss_pred HHCCCCEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 96599899997698752732079999998
Q gi|254780918|r 146 QLATSEWLALLDHDDLLHPTALYYVADAI 174 (623)
Q Consensus 146 ~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l 174 (623)
..+.|+||.++|+||. .|..+..+....
T Consensus 80 ~~~~~~~~~~~d~d~~-~~~~~~~~~~~~ 107 (291)
T COG0463 80 EYARGDYIVFLDADDQ-HPPELIPLVAAG 107 (291)
T ss_pred HHCCCCEEEEECCCCC-CCHHHHHHHHHH
T ss_conf 9658887999736667-877789998630
No 74
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.83 E-value=7.4e-20 Score=139.93 Aligned_cols=111 Identities=19% Similarity=0.338 Sum_probs=65.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCC-CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 997475898889999999998288-9974899987757806799999998875798899980888856489999999659
Q gi|254780918|r 71 VIMPVYKIKKEWLEMAIESVRSQI-YSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQLAT 149 (623)
Q Consensus 71 Iiip~yn~~~~~L~~~i~Si~~Qt-y~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l~~a~ 149 (623)
||||+|| +++.|.+.++.+.... -.++|+|+|||||+| .|.++++++...+++++++.++.|.|.+.|...|++.|+
T Consensus 1 IIIP~yN-Ee~~i~~~l~~i~~~~~~~~~eIIvVdDgStD-~T~~i~~~l~~~~~~~~~i~~~~n~G~g~Ai~~G~~~a~ 78 (224)
T cd06442 1 IIIPTYN-ERENIPELIERLDAALKGIDYEIIVVDDNSPD-GTAEIVRELAKEYPRVRLIVRPGKRGLGSAYIEGFKAAR 78 (224)
T ss_pred EEEEECC-CHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC-CCHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 3999548-78889999999998606899499999896973-717888654224772478633667872799999998601
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 98999976987527320799999987324755420
Q gi|254780918|r 150 SEWLALLDHDDLLHPTALYYVADAINNNPNAEIIY 184 (623)
Q Consensus 150 Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iY 184 (623)
|+||+++|+|....|..+..+++.+.+. +.++|.
T Consensus 79 ~~~i~~~DaD~q~~p~~i~~li~~~~~~-~~d~V~ 112 (224)
T cd06442 79 GDVIVVMDADLSHPPEYIPELLEAQLEG-GADLVI 112 (224)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHCC-CCCEEE
T ss_conf 7846886599976277789999998718-872479
No 75
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=99.82 E-value=2.1e-18 Score=131.06 Aligned_cols=197 Identities=18% Similarity=0.308 Sum_probs=86.6
Q ss_pred CCEEEEEECCCC-HHHHHHHHHHHHHCCCCCC--EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 816999953774-5569999987642079751--5799714899816899999998630888279975788873388989
Q gi|254780918|r 324 PLVSIIIPTYNH-HHLLKICLESIYHKTTYSS--FEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINN 400 (623)
Q Consensus 324 P~VSIIIp~~n~-~~~l~~cl~Sl~~~t~y~~--~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N 400 (623)
|.|.|.|||||+ .+.+++++-.-.+ .+||+ +.|.|.|||..+ +. ++++++. ++.++....+...-|...|
T Consensus 273 PtVDIfIPTYNEp~~vvr~Ti~aa~~-iDYP~dKl~VyvLDDG~R~-e~----r~lAeel-Gv~YitR~~N~HAKAGNLN 345 (858)
T PRK11498 273 PTVDIFVPTYNEDLNVVKNTIYASLG-IDWPKDKLNIWILDDGGRE-EF----RQFAQEV-GVGYIARPTHEHAKAGNIN 345 (858)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHH-CCCCHHHCEEEEECCCCCH-HH----HHHHHHH-CCCEEECCCCCCCCCCCHH
T ss_conf 71005764589988999999999982-8998011769993299998-99----9999985-9976736888666422678
Q ss_pred HHHHHCCCCEEEEECCCCEEECHHHHHHHHHHH-CCCCEEEEE-EEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCC
Q ss_conf 878614897474405882782816889988774-289816995-376646767567787044132540678656643225
Q gi|254780918|r 401 NATLHAKGQYFCFLNNDTEVINGQWLSEMMGIA-SQPQVGAVG-ARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKH 478 (623)
Q Consensus 401 ~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~-~~~~vG~Vg-~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~ 478 (623)
.|+++++||+|+++|.|..+ +++.|++.++++ ++|+++.|. |.-.|. ||. +|+. +|..+...
T Consensus 346 hAL~~T~GelVaIfDADhVP-~r~FL~rTvG~Fl~DpklalVQTPq~FyN------pDP-fqrN---Lg~~~~~P----- 409 (858)
T PRK11498 346 NALKYAKGEFVAIFDCDHVP-TRSFLQMTMGWFLKDKKLAMMQTPHHFFS------PDP-FERN---LGRFRKTP----- 409 (858)
T ss_pred HHHHHCCCCEEEEECCCCCC-CHHHHHHHHHHHHCCCCEEEEECCCCCCC------CCH-HHHH---CCCCCCCC-----
T ss_conf 88864588789996388887-47899986687722886489868833379------982-5441---22457889-----
Q ss_pred CCCCCCCCCCCCCCCCCCC---CCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCE
Q ss_conf 6555576442222334444---411101102043888898717999768763231688999999749819984754
Q gi|254780918|r 479 HKARCSVPNYQAFAMHFTH---SISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHA 551 (623)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~---~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a 551 (623)
++...+....+-.+ |-+.-.|.|..+||+.+++||||-.+..+ ||..-++|+.++||+.+|.+..
T Consensus 410 -----~E~elFY~~IQ~g~D~wnAaffCGS~AVlRR~AL~eIGGfateTVT---ED~~Tal~Lh~~Gy~S~Yl~e~ 477 (858)
T PRK11498 410 -----NEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIAVETVT---EDAHTSLRLHRRGYTSAYMRIP 477 (858)
T ss_pred -----CCHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCEEC---CCHHHHHHHHHCCCEEEECCHH
T ss_conf -----8266788986386434570699630799979999982895464033---0088899999779807750738
No 76
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.81 E-value=4.9e-20 Score=141.04 Aligned_cols=176 Identities=11% Similarity=0.119 Sum_probs=112.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCCC--EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 999537745569999987642079751--579971489981689999999863088827997578887338898987861
Q gi|254780918|r 328 IIIPTYNHHHLLKICLESIYHKTTYSS--FEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLH 405 (623)
Q Consensus 328 IIIp~~n~~~~l~~cl~Sl~~~t~y~~--~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~ 405 (623)
||||+||..+.+.+||+|+.++ +||. +|||||||+|+| +|.+..++.. ..+ +.+..+...+-+.+.|.|+++
T Consensus 1 VlIPa~NEe~vI~~ti~~l~~~-~YP~~~~eIivvdD~stD-~T~~~a~~~~---~~v-~~~~~~~~~gK~~aln~~~~~ 74 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQ-DYPRELYRIFVVADNCTD-DTAQVARAAG---ATV-LERHDPERRGKGYALDFGFRH 74 (183)
T ss_pred CEEECCCCHHHHHHHHHHHHHC-CCCCCCEEEEEEECCCCC-HHHHHHHHCC---CEE-EEEECCCCCCCHHHHHHHHHH
T ss_conf 9882078099999999999836-899785699998489862-0899999839---969-997377777628899988999
Q ss_pred CCC-----CEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCC
Q ss_conf 489-----747440588278281688998877428981699537664676756778704413254067865664322565
Q gi|254780918|r 406 AKG-----QYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHK 480 (623)
Q Consensus 406 a~g-----eyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~ 480 (623)
+++ |+++++|.|+. .+|++|.+|+..+. +++++|+++...... +.. ++... ....+....
T Consensus 75 ~~~~~~~~d~v~i~DAD~~-~~~d~l~~~~~~f~-~~~~~Vq~~~~~~N~-----~~n-----~lt~~---~~~e~~~~~ 139 (183)
T cd06438 75 LLNLADDPDAVVVFDADNL-VDPNALEELNARFA-AGARVVQAYYNSKNP-----DDS-----WITRL---YAFAFLVFN 139 (183)
T ss_pred HHCCCCCCCEEEEECCCCC-CCHHHHHHHHHHHH-CCCCEEEEEEEECCC-----CCC-----HHHHH---HHHHHHHHH
T ss_conf 8424788668999556667-79789999999983-899679842021179-----879-----99999---999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHH
Q ss_conf 555764422223344444111011020438888987179997687632316889
Q gi|254780918|r 481 ARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDL 534 (623)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDl 534 (623)
.....+... ..-...++|+++++||++++++ |||+..+. ||.||
T Consensus 140 -~v~~~~~~~-----~g~~~~~~G~~~~~Rr~~L~~~-Gw~~~tlt---ED~e~ 183 (183)
T cd06438 140 -RLRPLGRSN-----LGLSCQLGGTGMCFPWAVLRQA-PWAAHSLT---EDLEF 183 (183)
T ss_pred -HHHHHHHHH-----CCCCEEECCCHHHHHHHHHHHC-CCCCCCCC---CCCCC
T ss_conf -999999997-----6993588690465219999973-99999763---05898
No 77
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=99.81 E-value=1.1e-18 Score=132.69 Aligned_cols=193 Identities=15% Similarity=0.187 Sum_probs=143.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC--EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCH-HHH
Q ss_conf 4589789997475898889999999998288997--4899987757806799999998875798899980888856-489
Q gi|254780918|r 64 QNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSH--WELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHI-SAA 140 (623)
Q Consensus 64 ~~~P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~--~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~-~~a 140 (623)
+..|.|.|.||+||.|.+.++.++-..++-+||+ +.+.|.|||..+ +.++..++.. +.|+.+++|.+. +++
T Consensus 270 ~~WPtVDIfIPTYNEp~~vvr~Ti~aa~~iDYP~dKl~VyvLDDG~R~-e~r~lAeelG-----v~YitR~~N~HAKAGN 343 (858)
T PRK11498 270 SLWPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGRE-EFRQFAQEVG-----VGYIARPTHEHAKAGN 343 (858)
T ss_pred HHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCH-HHHHHHHHHC-----CCEEECCCCCCCCCCC
T ss_conf 438710057645899889999999999828998011769993299998-9999999859-----9767368886664226
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEE-ECCC--CCCCHHHH-------
Q ss_conf 9999996599899997698752732079999998732475542022206758983654-2256--67896674-------
Q gi|254780918|r 141 SNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSG-PYFK--YDFNPELF------- 210 (623)
Q Consensus 141 ~N~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~-p~fk--p~~~~~~l------- 210 (623)
.|.|++.++||||+++|+|-+..++.|.+.+..+.++|.+.+|-+-+...+++-.... -.++ |+- .+++
T Consensus 344 LNhAL~~T~GelVaIfDADhVP~r~FL~rTvG~Fl~DpklalVQTPq~FyNpDPfqrNLg~~~~~P~E-~elFY~~IQ~g 422 (858)
T PRK11498 344 INNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERNLGRFRKTPNE-GTLFYGLVQDG 422 (858)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCC-HHHHHHHHCCC
T ss_conf 78888645887899963888874789998668772288648986883337998254412245788982-66788986386
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEE
Q ss_conf ----14785431457689999971887898773027413678864248752200684227
Q gi|254780918|r 211 ----HVHNMITHLGVYRTETFKKIGGFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVLY 266 (623)
Q Consensus 211 ----~s~nyi~~~~~~rr~~~~~iGgf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vLy 266 (623)
-+.-|.|.+.++||+.+++||||..+- ..||..-.+|+..++- +-..++++|.
T Consensus 423 ~D~wnAaffCGS~AVlRR~AL~eIGGfateT-VTED~~Tal~Lh~~Gy--~S~Yl~e~La 479 (858)
T PRK11498 423 NDMWDATFFCGSCAVIRRKPLDEIGGIAVET-VTEDAHTSLRLHRRGY--TSAYMRIPQA 479 (858)
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHCCCCCCE-ECCCHHHHHHHHHCCC--EEEECCHHHH
T ss_conf 4345706996307999799999828954640-3300888999997798--0775073876
No 78
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=99.81 E-value=8.6e-19 Score=133.41 Aligned_cols=147 Identities=33% Similarity=0.554 Sum_probs=94.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 99747589888999999999828899748999877578067999999988757988999808888564899999996599
Q gi|254780918|r 71 VIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQLATS 150 (623)
Q Consensus 71 Iiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l~~a~G 150 (623)
||||+||. .++|+.+|+|+++|+|+++|++|+||+|+|. +.+.+.++......+.+...+.+.|.+.++|.|++.++|
T Consensus 1 iii~~~n~-~~~l~~~l~si~~~~~~~~eiiiid~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~~ 78 (156)
T cd00761 1 VIIPAYNE-EPYLERCLESLLAQTYPNFEVIVVDDGSTDG-TLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAARG 78 (156)
T ss_pred EEEEECCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCC-HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf 09998898-8999999999982899897999998999800-221000001456638995056787846887788874899
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 89999769875273207999999873247554202220675898365422566789667414785431457689999971
Q gi|254780918|r 151 EWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYDFNPELFHVHNMITHLGVYRTETFKKI 230 (623)
Q Consensus 151 e~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~~~~~~l~s~nyi~~~~~~rr~~~~~i 230 (623)
+|++++|+|+.+.++++..++..+..++.++++++. ...+++++.+.++
T Consensus 79 ~~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~ 127 (156)
T cd00761 79 EYILFLDADDLLLPDWLERLVAELLADPEADAVGGP-------------------------------GNLLFRRELLEEI 127 (156)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECC-------------------------------EEEEEEHHHHHHH
T ss_conf 999999999857874999999999988787999878-------------------------------2477889999984
Q ss_pred CCCCCCCCC-CCCCHHHHHHH
Q ss_conf 887898773-02741367886
Q gi|254780918|r 231 GGFREKFEG-AQDYDLVLRFL 250 (623)
Q Consensus 231 Ggf~~~~~~-~~D~Dl~lR~~ 250 (623)
+++...... .+|.++..+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~ 148 (156)
T cd00761 128 GGFDEALLSGEEDDDFLLRLL 148 (156)
T ss_pred CCCCCCCCCCCCHHHHHHHHH
T ss_conf 899970035656999999999
No 79
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.81 E-value=5.3e-19 Score=134.69 Aligned_cols=177 Identities=18% Similarity=0.204 Sum_probs=121.0
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCC----------CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHH
Q ss_conf 99747589888999999999828899----------74899987757806799999998875798899980888856489
Q gi|254780918|r 71 VIMPVYKIKKEWLEMAIESVRSQIYS----------HWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAA 140 (623)
Q Consensus 71 Iiip~yn~~~~~L~~~i~Si~~Qty~----------~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a 140 (623)
||||+||.+++.|.+||+||++|+|| +.|+|+++||+.+.+..+ .++ ....-.+
T Consensus 1 V~ip~YNE~~~~l~~tl~Si~~~~yp~~~~~~~~~~~~~v~vi~Dg~~~~n~gK-------~~s---------~~~~~~a 64 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIKKNRGK-------RDS---------QLWFFNY 64 (244)
T ss_pred CEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCC-------HHH---------HHHHHHH
T ss_conf 988478898799999999999758974345777776289999977887676631-------237---------9999999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCHHHHC---------
Q ss_conf 99999965998999976987527320799999987324755420222067589836542256678966741---------
Q gi|254780918|r 141 SNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYDFNPELFH--------- 211 (623)
Q Consensus 141 ~N~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~~~~~~l~--------- 211 (623)
.|.++..++||+|+++|+|.++.|++|..++..+..+|.++.|-+ .-.+...+ ..+.-+-. ..|+..
T Consensus 65 l~~~~~~~~~e~v~~vDaDt~~~~~al~~lv~~f~~dp~vgaV~G-~i~v~n~~--~~~l~~~q-~~EY~~~~~~~r~~~ 140 (244)
T cd04190 65 FCRVLFPDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCG-EIHPMGKK--QGPLVMYQ-VFEYAISHWLDKAFE 140 (244)
T ss_pred HHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEE-EEEECCCC--CCHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 998875059809999907998185799999999963998378876-68965788--88899999-999999999889999
Q ss_pred ----CCCC-CCHHHHHHHHHHHHHCCCCCCC-------------------CCCCCCHHHHHHHHCCCCCCEEECCCCEEE
Q ss_conf ----4785-4314576899999718878987-------------------730274136788642487522006842279
Q gi|254780918|r 212 ----VHNM-ITHLGVYRTETFKKIGGFREKF-------------------EGAQDYDLVLRFLENIDLSQIIHIPRVLYH 267 (623)
Q Consensus 212 ----s~ny-i~~~~~~rr~~~~~iGgf~~~~-------------------~~~~D~Dl~lR~~~~~~~~~i~hip~vLy~ 267 (623)
+.++ .|.+.+||++++.+++|..... .-++|.+|.+++..+....++.+.|....+
T Consensus 141 s~~G~v~~~pGa~s~yR~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~laEDr~Lt~~l~~~g~~~~~~y~p~A~~~ 220 (244)
T cd04190 141 SVFGFVTCLPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRKYLYVPGAVAE 220 (244)
T ss_pred HHCCCEEECCCCHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHHHHHHCCCCHHCHHHHHHHHHHHCCCCEEEECCCCEEE
T ss_conf 86799897178125520998873478744411002233310133321111021109999999982887348874573899
No 80
>KOG3738 consensus
Probab=99.80 E-value=7.5e-20 Score=139.88 Aligned_cols=193 Identities=20% Similarity=0.282 Sum_probs=143.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCE--EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
Q ss_conf 5897899974758988899999999982889974--89998775780679999999887579889998088885648999
Q gi|254780918|r 65 NKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHW--ELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASN 142 (623)
Q Consensus 65 ~~P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~~--EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N 142 (623)
.-|--||||..+|.-...|-++|-||+++|..+. |||+|||.|.|++....|.+. +|+++.++.+..|+-..++
T Consensus 122 dlp~TsviITfHNEARS~LLRTv~SvlnrsP~~li~EiILVDD~S~Dped~~~L~ri----~kvr~LRN~~ReGLirSRv 197 (559)
T KOG3738 122 DLPPTSVIITFHNEARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQDPEDGKLLKRI----PKVRVLRNNEREGLIRSRV 197 (559)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHEEEEECCCCCCHHHHHHHHHH----HEEEEECCCCHHHHHHHHC
T ss_conf 799705999951178889999999998179288543368852788886889997530----1565330552133566422
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCC------CCCCCCC-EEEC-----CCCCEEEECCCCCC-CHHH
Q ss_conf 99996599899997698752732079999998732475------5420222-0675-----89836542256678-9667
Q gi|254780918|r 143 SAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNA------EIIYSDE-DKIN-----ENQIRSGPYFKYDF-NPEL 209 (623)
Q Consensus 143 ~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~------~~iYsDe-~~i~-----~~g~~~~p~fkp~~-~~~~ 209 (623)
+|...|.|.++.|||+.++...+||+-+.+.+.+++.. |+|--|. ..+. .+|.--.-+||-++ +++.
T Consensus 198 rGAdvA~a~vltFLDSHcEvN~~WLePLL~Rvaed~trvVsPiiDvIn~dnf~Y~~asadLrGGFDWsLhF~We~~~~eq 277 (559)
T KOG3738 198 RGADVAQATVLTFLDSHCEVNEGWLEPLLERVAEDTTRVVSPIIDVINLDNFSYVGASADLRGGFDWSLHFKWEQMQLEQ 277 (559)
T ss_pred CCCCCCCCEEEEEEECCEEECCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCEEEEEEEHHCCHHH
T ss_conf 34210016278977042000301327899987426660330321104466310103225544776517998701069777
Q ss_pred ----------HCCCCCCCHHHHHHHHHHHHHCCCCCCCC--CCCCCHHHHHHHH------CCCCCCEEEC
Q ss_conf ----------41478543145768999997188789877--3027413678864------2487522006
Q gi|254780918|r 210 ----------FHVHNMITHLGVYRTETFKKIGGFREKFE--GAQDYDLVLRFLE------NIDLSQIIHI 261 (623)
Q Consensus 210 ----------l~s~nyi~~~~~~rr~~~~~iGgf~~~~~--~~~D~Dl~lR~~~------~~~~~~i~hi 261 (623)
.++-.+.|.++++.|+.|.++|.||..++ |.+..++.+|+.. ...+.+|+||
T Consensus 278 r~sr~~Pt~PirtP~iAGGlfvidk~wF~~LGkyd~~mdiWGGEn~ElsfrvW~CGGslEIvPCSRVGHV 347 (559)
T KOG3738 278 RESRADPTAPIRTPAIAGGLFVIDKEWFNELGKYDMDMDIWGGENLELSFRVWQCGGSLEIVPCSRVGHV 347 (559)
T ss_pred HHHCCCCCCCCCCCCCCCEEEEECHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEECCCHHHH
T ss_conf 7531598876447420251689609999875466750200177534789999863775689863201143
No 81
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=99.80 E-value=4.2e-18 Score=129.16 Aligned_cols=203 Identities=17% Similarity=0.174 Sum_probs=132.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHCC---CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 99953774556999998764207---975157997148998168999999986308882799757888733889898786
Q gi|254780918|r 328 IIIPTYNHHHLLKICLESIYHKT---TYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATL 404 (623)
Q Consensus 328 IIIp~~n~~~~l~~cl~Sl~~~t---~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~ 404 (623)
||||+||..+.+..++++|.+.. ...++|||||||||+| .|.+.++++..+++....+.....+.|++.+.+.|+.
T Consensus 1 IiIP~yNE~~~I~~~i~~i~~~~~~~~~~~~eIivVddgS~D-~T~~i~~~~~~~~~~~~~vi~~~~n~G~g~A~~~G~~ 79 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKD-GTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGML 79 (211)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC-CHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHH
T ss_conf 099924788889999999999986336998389999899971-8799999997417865999965888880489999999
Q ss_pred HCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEE-EEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCC
Q ss_conf 1489747440588278281688998877428981699-537664676756778704413254067865664322565555
Q gi|254780918|r 405 HAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAV-GARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARC 483 (623)
Q Consensus 405 ~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~V-g~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~ 483 (623)
.|++||++++|+|-.. +|+.+..|+......+..+| |.|... ++... .+.- .........+.
T Consensus 80 ~a~~d~i~~~DaD~~~-~~~~i~~l~~~~~~~~~d~V~GsR~~~--------~~~~~-~~~~-~~r~~~s~~~~------ 142 (211)
T cd04188 80 AARGDYILFADADLAT-PFEELEKLEEALKTSGYDIAIGSRAHL--------ASAAV-VKRS-WLRNLLGRGFN------ 142 (211)
T ss_pred HHHCCEEEEECCCCCC-HHHHHHHHHHHHHHCCCEEEEEECCCC--------CCCCC-CCCC-HHHHHHHHHHH------
T ss_conf 6004855677689740-788999999999848981999975567--------99863-3563-88999999999------
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHC-CCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEEC
Q ss_conf 76442222334444411101102043888898717-999768763231688999999749819984754999517
Q gi|254780918|r 484 SVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVG-GFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHDE 557 (623)
Q Consensus 484 ~~~~~~~~~~~~~~~~savtgacllirr~~f~~iG-GfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~e 557 (623)
.. .......+++-.+...-+++|++++++- ...+..| .-|+++.+++.+.|+++...|=.. .+.+
T Consensus 143 ----~~-~~~l~~~~i~D~~~gfr~~~~~~l~~i~~~~~~~~f---~~~~El~~~~~~~g~ki~EvPi~~-~~r~ 208 (211)
T cd04188 143 ----FL-VRLLLGLGIKDTQCGFKLFTRDAARRLFPRLHLERW---AFDVELLVLARRLGYPIEEVPVRW-VEIP 208 (211)
T ss_pred ----HH-HHHHHCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCC---CCHHHHHHHHHHCCCCEEEEEEEE-EECC
T ss_conf ----99-999838987888867465779999998755646885---015999999998699199990089-9899
No 82
>PTZ00260 glycosyl transferase group 2; Provisional
Probab=99.80 E-value=3e-18 Score=130.12 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=34.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHC--CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 48999877578067999999988757--988999808888564899999996599899997698752732079999998
Q gi|254780918|r 98 WELCIAEDCSGDIETVSLLKKYANMD--SRIKVVFRAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAI 174 (623)
Q Consensus 98 ~EliivdD~S~d~~~~~~l~~~~~~d--~ri~~~~~~~n~g~~~a~N~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l 174 (623)
||+|||||||+| .|.++..+++... .+|+++..+.|.|-++|.-.|+.+|+|+||.|+|+|---.+.-+..+...+
T Consensus 117 yEIIVVDDGStD-~T~eVa~~~~~~~~~~~IRvl~l~kNrGKG~AVr~Gml~ArG~~ILfaDADgAt~i~dl~kL~~~l 194 (336)
T PTZ00260 117 YEIIIINDGSKD-KTLKVAKKYWKSINNKNFRLLTYNRNRGKGGAVKLGMLASAGKYQLMMDADGATDLNEFEKLEDIL 194 (336)
T ss_pred EEEEEECCCCCC-CHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 799998169998-869999999997699809999716777846999999998179889999478898978999999999
No 83
>KOG3737 consensus
Probab=99.80 E-value=2e-19 Score=137.30 Aligned_cols=269 Identities=17% Similarity=0.191 Sum_probs=167.2
Q ss_pred ECCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCC--EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 13678888816999953774-5569999987642079751--57997148998168999999986308882799757888
Q gi|254780918|r 316 HYMIPNPPPLVSIIIPTYNH-HHLLKICLESIYHKTTYSS--FEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHP 392 (623)
Q Consensus 316 ~~~~~~~~P~VSIIIp~~n~-~~~l~~cl~Sl~~~t~y~~--~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~ 392 (623)
+|..|...|.+||||+.+|. ...|-+++.|++..+. +. -|||+|||.|+.+...+-|+++...+.+...|..+...
T Consensus 147 hWdYpe~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP-~~~l~eivlvDDfSdKehLkekLDeYv~~fnGlVkV~Rne~R 225 (603)
T KOG3737 147 HWDYPENLPTSSVVIVFHNEGWSTLMRTVHSVIKRSP-RKYLAEIVLVDDFSDKEHLKEKLDEYVKLFNGLVKVFRNERR 225 (603)
T ss_pred CCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCC-HHHHHEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECCHH
T ss_conf 5678556875239999936861789999999983283-875430788446786187899999999985677999843203
Q ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCC---
Q ss_conf 73388989878614897474405882782816889988774289816995376646767567787044132540678---
Q gi|254780918|r 393 FNYSRINNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGIN--- 469 (623)
Q Consensus 393 ~n~s~~~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~--- 469 (623)
-+.-.+.-+|+++|+|+.|+|||+.+|| .-+||..|++...+...-+.-|.+---++ ++-.+--+..+-+
T Consensus 226 EGLI~aRSiGA~~atGeV~ifLDAHCEV-ntNWlpPLlAPI~rdRtvmTVP~IDgId~------n~~EyrpvyG~dn~h~ 298 (603)
T KOG3737 226 EGLIQARSIGAQKATGEVLIFLDAHCEV-NTNWLPPLLAPISRDRTVMTVPLIDGIDG------NTYEYRPVYGGDNDHA 298 (603)
T ss_pred HHHHHHHCCCHHHCCCCEEEEEECCEEE-ECCCCCCCCCCCCCCCEEEEEEEEEEECC------CCEEEEECCCCCCHHH
T ss_conf 2223331031021246089998244143-04536500253116853788741540358------8237863368862554
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEE
Q ss_conf -6566432256555576442222334444411--1011020438888987179997687632316889999997498199
Q gi|254780918|r 470 -NIAGHKNKHHKARCSVPNYQAFAMHFTHSIS--AVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNV 546 (623)
Q Consensus 470 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--avtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v 546 (623)
|+..- ...+......+.....+.+-.+.+- +-.|..++|.|+.|.++|.+|+.....++|..+|++++++.|..++
T Consensus 299 rGifeW-gmLyKe~~~t~rE~r~RkhnsePyRSPthAGGLfAInRe~F~ELG~YDpgLqiWGGEnfElSfKIWQCGG~i~ 377 (603)
T KOG3737 299 RGIFEW-GMLYKEVPLTPREKRLRKHNSEPYRSPTHAGGLFAINREFFFELGLYDPGLQIWGGENFELSFKIWQCGGKIL 377 (603)
T ss_pred CCHHHH-HHEECCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCCCEEECCCCEEEEEEEEEECCEEE
T ss_conf 032013-3301147788788876640588777864446433232889998546787435644744168888875087789
Q ss_pred ECCCEEEEEEC----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 84754999517----73367766899999999999999998838884148984
Q gi|254780918|r 547 WTPHADLYHDE----SRTRKYDHEDPAKMIVFQEACQYLQKRWKKIIEKDPCY 595 (623)
Q Consensus 547 ~~P~a~v~H~e----s~srg~~~~~~~k~~~~~~~~~~~~~rW~~~~~~Dp~y 595 (623)
|+|.++|-|.. .-+.|.-... .+--...-+.....+-|.+. -.|-||
T Consensus 378 fVPCSrVGHvYR~~mpy~fgk~~~k-~~~p~i~iNy~RVvetW~Dd-yk~Yfy 428 (603)
T KOG3737 378 FVPCSRVGHVYRSLMPYQFGKPPIK-VGSPPILINYVRVVETWWDD-YKDYFY 428 (603)
T ss_pred EEECCCCCHHHHCCCCCCCCCCCCC-CCCCCEEEEHHHHHHHHHHH-HHHHEE
T ss_conf 9986410010001366657888543-68985573503578988776-555515
No 84
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.78 E-value=1e-17 Score=126.77 Aligned_cols=205 Identities=19% Similarity=0.273 Sum_probs=138.5
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99953774556999998764207975157997148998168999999986308882799757888733889898786148
Q gi|254780918|r 328 IIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHAK 407 (623)
Q Consensus 328 IIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a~ 407 (623)
||||+||+.+.+..+++.|.+.....++|||||||||+| .|.+.++++..++++++++.... +.|++.+...|++.|+
T Consensus 1 IIIP~yNEe~~i~~~l~~i~~~~~~~~~eIIvVdDgStD-~T~~i~~~l~~~~~~~~~i~~~~-n~G~g~Ai~~G~~~a~ 78 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPD-GTAEIVRELAKEYPRVRLIVRPG-KRGLGSAYIEGFKAAR 78 (224)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC-CCHHHHHHHHCCCCCEEEEECCC-CCCHHHHHHHHHHHHC
T ss_conf 399954878889999999998606899499999896973-71788865422477247863366-7872799999998601
Q ss_pred CCEEEEECCCCEEECHHHHHHHHHHHCCCCEE-EEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 97474405882782816889988774289816-99537664676756778704413254067865664322565555764
Q gi|254780918|r 408 GQYFCFLNNDTEVINGQWLSEMMGIASQPQVG-AVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSVP 486 (623)
Q Consensus 408 geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG-~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~~~~ 486 (623)
|||++++|+|-.. +|..+..|+....+.+.. ++|-|.... +....-+. .+..... .-
T Consensus 79 ~~~i~~~DaD~q~-~p~~i~~li~~~~~~~~d~V~GsR~~~~--------~~~~~~~~-----------~r~~~s~--~~ 136 (224)
T cd06442 79 GDVIVVMDADLSH-PPEYIPELLEAQLEGGADLVIGSRYVEG--------GGVEGWGL-----------KRKLISR--GA 136 (224)
T ss_pred CCCEEEECCCCCC-CHHHHHHHHHHHHCCCCCEEEEEEECCC--------CCCCCCHH-----------HHHHHHH--HH
T ss_conf 7846886599976-2777899999987188724798876279--------86357706-----------6678888--88
Q ss_pred CCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCC-CCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEECCCC
Q ss_conf 422223344444111011020438888987179-99768763231688999999749819984754999517733
Q gi|254780918|r 487 NYQAFAMHFTHSISAVTGACMVMSKKCFMHVGG-FDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHDESRT 560 (623)
Q Consensus 487 ~~~~~~~~~~~~~savtgacllirr~~f~~iGG-fDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~es~s 560 (623)
... .......++.-+++..-++++++++++.. +....|. -|+++.+++...|+++...|-....+..|.|
T Consensus 137 ~~i-~~~l~~~~i~D~~~gfr~~~~~~~~~i~~~~~~~~f~---~~~ei~~~~~~~~~ki~evpv~~~~R~~G~S 207 (224)
T cd06442 137 NLL-ARLLLGRKVSDPTSGFRAYRREVLEKLIDSLVSKGYK---FQLELLVRARRLGYRIVEVPITFVDREHGES 207 (224)
T ss_pred HHH-HHHCCCCEECCCCCCEEEEEHHHHHHHHHHCCCCCCC---CHHHHHHHHHHCCCEEEEEEEEECCCCCCCC
T ss_conf 876-3230584243179963998899999887754566630---1899999999889989999727779999803
No 85
>KOG3736 consensus
Probab=99.78 E-value=1.3e-19 Score=138.32 Aligned_cols=196 Identities=20% Similarity=0.240 Sum_probs=148.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC--EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
Q ss_conf 589789997475898889999999998288997--489998775780679999999887579889998088885648999
Q gi|254780918|r 65 NKPLISVIMPVYKIKKEWLEMAIESVRSQIYSH--WELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASN 142 (623)
Q Consensus 65 ~~P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~--~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N 142 (623)
.-|..||||+.+|.....|-++|-||++.|-+. -|||+|||.|........|++|......++++++++..|+-.|++
T Consensus 140 ~Lp~~Svii~f~nE~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~~~l~~~Ld~y~k~~~~v~i~r~~~R~GLIrARl 219 (578)
T KOG3736 140 KLPTTSVIIIFHNEAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDRDHLKDKLEEYVKRFSKVRILRTKKREGLIRARL 219 (578)
T ss_pred CCCCCCEEEEEECCCCCCHHHEEEEEHCCCCHHHEEEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHH
T ss_conf 36887438997157773213057731402876584899996067513444456699987424525776320014688886
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCE-------------EEECCCC---CCC
Q ss_conf 999965998999976987527320799999987324755420222067589836-------------5422566---789
Q gi|254780918|r 143 SAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIR-------------SGPYFKY---DFN 206 (623)
Q Consensus 143 ~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~-------------~~p~fkp---~~~ 206 (623)
.|.+.|+||.++|||+..+....||+-+...|.++... ++-.-.|.|+.+.-. -.-.|+- .+.
T Consensus 220 ~GA~~A~geVL~FLDsHcE~n~gWLePLL~~I~~~r~t-vv~PvID~Id~~tf~y~~~~~~~rGgFdW~l~f~w~~lP~~ 298 (578)
T KOG3736 220 LGASMATGEVLTFLDSHCEVNVGWLEPLLARIAEDRKT-VVCPVIDVIDDNTFEYEKQSELMRGGFDWELTFKWERLPLP 298 (578)
T ss_pred HHHHHHHCHHEEEEECCEEEECCCCHHHHHHHHHCCCE-EEECEEEEECCCCCEECCCCCCCEEEEECCEEEEECCCCCC
T ss_conf 64343000010323154467517555888886425723-65020774147671003267433013402025784438854
Q ss_pred H--------HHHCCCCCCCHHHHHHHHHHHHHCCCCCCCC--CCCCCHHHHHHHH------CCCCCCEEEC
Q ss_conf 6--------6741478543145768999997188789877--3027413678864------2487522006
Q gi|254780918|r 207 P--------ELFHVHNMITHLGVYRTETFKKIGGFREKFE--GAQDYDLVLRFLE------NIDLSQIIHI 261 (623)
Q Consensus 207 ~--------~~l~s~nyi~~~~~~rr~~~~~iGgf~~~~~--~~~D~Dl~lR~~~------~~~~~~i~hi 261 (623)
. +=++|--|.|.++++.|..|.++|+||++++ |.+..+|.+|+.. ..++.+|+||
T Consensus 299 ~~~~~~~~t~PirsPtMaGglFAI~r~yF~eiG~yD~gMdiwGGENlElSfrvWqCGG~lei~PCSrVGHi 369 (578)
T KOG3736 299 EEKRRELPTDPIRSPTMAGGLFAIDRKYFGELGSYDEGMDIWGGENLELSFRVWQCGGRLEIVPCSRVGHI 369 (578)
T ss_pred HHHCCCCCCCCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCEEEEEEECCCCEEEECCCCCEEEE
T ss_conf 66604488877578432774478638887550576663500071120245799500876875176500454
No 86
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=99.78 E-value=6.1e-18 Score=128.19 Aligned_cols=159 Identities=19% Similarity=0.226 Sum_probs=113.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH---CCCCCEEEEEECCCCCHHHHHHHHHHHHH-HCCCEEEEECCCCCCHHHHHH
Q ss_conf 97899974758988899999999982---88997489998775780679999999887-579889998088885648999
Q gi|254780918|r 67 PLISVIMPVYKIKKEWLEMAIESVRS---QIYSHWELCIAEDCSGDIETVSLLKKYAN-MDSRIKVVFRAKNGHISAASN 142 (623)
Q Consensus 67 P~iSIiip~yn~~~~~L~~~i~Si~~---Qty~~~EliivdD~S~d~~~~~~l~~~~~-~d~ri~~~~~~~n~g~~~a~N 142 (623)
.+||||+|+||. ++.|.+.++-+.+ +--.+||+|+|||||+|. +.+++++.++ .+++|+++....|.|...|..
T Consensus 6 kkiSIViP~yNE-e~~i~~~~~~~~~~l~~~~~~~EiI~VDDgS~D~-T~~~l~~l~~~~~~~v~~i~lsRNfG~~~Ai~ 83 (324)
T PRK10714 6 KKVSVVIPVYNE-QESLPELIRRTTAACESLGKEYEILLIDDGSSDN-SAEMLVEASQAEDSHIISILLNRNYGQHSAIM 83 (324)
T ss_pred CEEEEEEECCCC-HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC-HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
T ss_conf 869999801777-8779999999999998679998999998999867-79999998630599689998988988568999
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCC------HHHHCCC---
Q ss_conf 9999659989999769875273207999999873247554202220675898365422566789------6674147---
Q gi|254780918|r 143 SAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYDFN------PELFHVH--- 213 (623)
Q Consensus 143 ~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~~~------~~~l~s~--- 213 (623)
.|++.|+||+|+.+|+|-.-.|..+..+++...+ +.|+||+-. ..+.+++||--.+ ...+...
T Consensus 84 aGl~~a~Gd~vi~mD~DLQdpPe~Ip~li~~~~~--G~DvV~~~r------~~r~~~~~r~~~s~l~~~l~~~~~~~~~~ 155 (324)
T PRK10714 84 AGFSHVTGDLIITLDADLQNPPEEIPRLVAKADE--GYDVVGTVR------QNRQDSWFRKTASKMINRLIQRTTGKAMG 155 (324)
T ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHC--CCCEEEEEE------CCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9987347998999868887598899999998704--886899988------88877578899999999999985399878
Q ss_pred CCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 8543145768999997188789
Q gi|254780918|r 214 NMITHLGVYRTETFKKIGGFRE 235 (623)
Q Consensus 214 nyi~~~~~~rr~~~~~iGgf~~ 235 (623)
.+.+.+.+++|.+.+++-.+++
T Consensus 156 d~~~~frl~~r~vv~~l~~~~e 177 (324)
T PRK10714 156 DYGCMLRAYRRHIVDAMLHCHE 177 (324)
T ss_pred CCCHHHHHHHHHHHHHHHHCCC
T ss_conf 7531244137999999996378
No 87
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=99.76 E-value=4.6e-17 Score=122.83 Aligned_cols=153 Identities=32% Similarity=0.543 Sum_probs=119.9
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99953774556999998764207975157997148998168999999986308882799757888733889898786148
Q gi|254780918|r 328 IIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHAK 407 (623)
Q Consensus 328 IIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a~ 407 (623)
||||++|..+++++||+|+.+++ |+++||+|+||+|+|. +.+.+.........+..+ ......+.+.+.|.|++.++
T Consensus 1 iii~~~n~~~~l~~~l~si~~~~-~~~~eiiiid~~s~~~-~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~n~~~~~~~ 77 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLAQT-YPNFEVIVVDDGSTDG-TLEILEEYAKKDPRVIRV-INEENQGLAAARNAGLKAAR 77 (156)
T ss_pred EEEEECCCHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCC-HHHHHHHHCCCCCEEEEE-CCCCCCCHHHHHHHHHHHCC
T ss_conf 09998898899999999998289-9897999998999800-221000001456638995-05678784688778887489
Q ss_pred CCEEEEECCCCEEECHHHHHHHHHHH-CCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 97474405882782816889988774-28981699537664676756778704413254067865664322565555764
Q gi|254780918|r 408 GQYFCFLNNDTEVINGQWLSEMMGIA-SQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSVP 486 (623)
Q Consensus 408 geyilfLn~D~~v~~~~wL~~Ll~~~-~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~~~~ 486 (623)
+|+++|+|+|+. ..++|++.++... ..+.+++|++.
T Consensus 78 ~~~v~~~d~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 114 (156)
T cd00761 78 GEYILFLDADDL-LLPDWLERLVAELLADPEADAVGGP------------------------------------------ 114 (156)
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHHHHHCCCEEEEECC------------------------------------------
T ss_conf 999999999985-7874999999999988787999878------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEE
Q ss_conf 42222334444411101102043888898717999768763231688999999749819
Q gi|254780918|r 487 NYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRN 545 (623)
Q Consensus 487 ~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~ 545 (623)
+.++++++.+++++++++..+ ...+|.+++.+....+...
T Consensus 115 ------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (156)
T cd00761 115 ------------------GNLLFRRELLEEIGGFDEALL-SGEEDDDFLLRLLRGGKVA 154 (156)
T ss_pred ------------------EEEEEEHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHCCCEE
T ss_conf ------------------247788999998489997003-5656999999999539741
No 88
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=99.74 E-value=1.7e-17 Score=125.41 Aligned_cols=157 Identities=19% Similarity=0.214 Sum_probs=118.2
Q ss_pred EEECCCCCCHHHHHHHHHH---HHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9974758988899999999---9828899748999877578067999999988757988999808888564899999996
Q gi|254780918|r 71 VIMPVYKIKKEWLEMAIES---VRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQL 147 (623)
Q Consensus 71 Iiip~yn~~~~~L~~~i~S---i~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l~~ 147 (623)
||||+||. ++.|.++++. ++.+...++|+|||||||+| .|.++++++...+++|+++.+++|.|.+.|...|++.
T Consensus 1 IIIP~yNE-e~~I~~~i~~i~~~~~~~~~~~eIivVDD~StD-~T~~i~~~l~~~~~~v~~i~~~~N~G~g~Ai~~g~~~ 78 (181)
T cd04187 1 IVVPVYNE-EENLPELYERLKAVLESLGYDYEIIFVDDGSTD-RTLEILRELAARDPRVKVIRLSRNFGQQAALLAGLDH 78 (181)
T ss_pred CEEEECCC-HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC-CCHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99961678-887999999999998655998799999899975-6245420121233320453145576446788989985
Q ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCC----CC--HHHHCCCC---CCCH
Q ss_conf 599899997698752732079999998732475542022206758983654225667----89--66741478---5431
Q gi|254780918|r 148 ATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYD----FN--PELFHVHN---MITH 218 (623)
Q Consensus 148 a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~----~~--~~~l~s~n---yi~~ 218 (623)
|+||||+++|+|....|..+..+.+.+.+ +.|+|++.- . .+..++++-= ++ ...+...+ +.|.
T Consensus 79 a~~d~i~~~D~D~q~~p~~i~~l~~~~~~--~~D~V~gsR--~----~r~~~~~r~~~s~~~~~l~~~l~~~~~~D~~~g 150 (181)
T cd04187 79 ARGDAVITMDADLQDPPELIPEMLAKWEE--GYDVVYGVR--K----NRKESWLKRLTSKLFYRLINKLSGVDIPDNGGD 150 (181)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHC--CCEEEEEEE--E----CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 56974775189998299999999999975--991999997--0----788768999999999999999879990078928
Q ss_pred HHHHHHHHHHHHCCCCCCC
Q ss_conf 4576899999718878987
Q gi|254780918|r 219 LGVYRTETFKKIGGFREKF 237 (623)
Q Consensus 219 ~~~~rr~~~~~iGgf~~~~ 237 (623)
+.+|+|++++++--+.+.+
T Consensus 151 fr~~~r~~~~~i~~~~~~~ 169 (181)
T cd04187 151 FRLMDRKVVDALLLLPERH 169 (181)
T ss_pred EEEEEHHHHHHHHHCCCCC
T ss_conf 6998899999987489988
No 89
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.74 E-value=4.3e-17 Score=123.00 Aligned_cols=102 Identities=27% Similarity=0.352 Sum_probs=76.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 78999747589888999999999828899748999877578067999999988757988999808888564899999996
Q gi|254780918|r 68 LISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQL 147 (623)
Q Consensus 68 ~iSIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l~~ 147 (623)
.||++|+|||. +..|.+||+||.... -||||||++||| .|.++++++. ++++.+ ...|.+.++|.|++.
T Consensus 1 ~is~~i~t~Ne-e~~l~~~l~sl~~~~---deiivvDs~StD-~T~~ia~~~~-----~~v~~~-~~~~~~~qrn~a~~~ 69 (229)
T cd02511 1 TLSVVIITKNE-ERNIERCLESVKWAV---DEIIVVDSGSTD-RTVEIAKEYG-----AKVYQR-WWDGFGAQRNFALEL 69 (229)
T ss_pred CEEEEEEECCC-HHHHHHHHHHHHCCC---CEEEEEECCCCC-CHHHHHHHCC-----CEEEEC-CCCCHHHHHHHHHHH
T ss_conf 98999982584-888999999876439---889999597987-5299999849-----908954-778879999999983
Q ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 5998999976987527320799999987324755
Q gi|254780918|r 148 ATSEWLALLDHDDLLHPTALYYVADAINNNPNAE 181 (623)
Q Consensus 148 a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~ 181 (623)
|++|||.+||+|..+++....++...+.. ++.+
T Consensus 70 a~~dWil~lDADE~~~~~l~~ei~~~~~~-~~~~ 102 (229)
T cd02511 70 ATNDWVLSLDADERLTPELADEILALLAT-DDYD 102 (229)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHC-CCCC
T ss_conf 89988999711012799999999999728-9975
No 90
>KOG3738 consensus
Probab=99.74 E-value=9.6e-18 Score=126.97 Aligned_cols=259 Identities=17% Similarity=0.229 Sum_probs=166.5
Q ss_pred EEECCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCCE--EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 12136788888169999537745-5699999876420797515--79971489981689999999863088827997578
Q gi|254780918|r 314 RTHYMIPNPPPLVSIIIPTYNHH-HLLKICLESIYHKTTYSSF--EVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNT 390 (623)
Q Consensus 314 r~~~~~~~~~P~VSIIIp~~n~~-~~l~~cl~Sl~~~t~y~~~--EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~ 390 (623)
.+.|. ...|.-||||..+|.. ..|-+++-|++.++ ++++ |||+|||+|.|++....|.++ +.+++++++.
T Consensus 116 ~~~y~--~dlp~TsviITfHNEARS~LLRTv~Svlnrs-P~~li~EiILVDD~S~Dped~~~L~ri----~kvr~LRN~~ 188 (559)
T KOG3738 116 DVDYK--VDLPPTSVIITFHNEARSTLLRTVVSVLNRS-PEHLIHEIILVDDFSQDPEDGKLLKRI----PKVRVLRNNE 188 (559)
T ss_pred CCEEE--CCCCCCEEEEEECCHHHHHHHHHHHHHHCCC-HHHHHHEEEEECCCCCCHHHHHHHHHH----HEEEEECCCC
T ss_conf 42043--1799705999951178889999999998179-288543368852788886889997530----1565330552
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCC
Q ss_conf 88733889898786148974744058827828168899887742898169953766467675677870441325406786
Q gi|254780918|r 391 HPFNYSRINNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINN 470 (623)
Q Consensus 391 ~~~n~s~~~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~ 470 (623)
. -|.-+..+.|+..|+|.++.|||+.+|+ ..+||+.|++.......-+|.|.+-- ...| +.++.|.-..+.|
T Consensus 189 R-eGLirSRvrGAdvA~a~vltFLDSHcEv-N~~WLePLL~Rvaed~trvVsPiiDv-----In~d-nf~Y~~asadLrG 260 (559)
T KOG3738 189 R-EGLIRSRVRGADVAQATVLTFLDSHCEV-NEGWLEPLLERVAEDTTRVVSPIIDV-----INLD-NFSYVGASADLRG 260 (559)
T ss_pred H-HHHHHHHCCCCCCCCCEEEEEEECCEEE-CCHHHHHHHHHHHHCCCCEEECCCCC-----CCCC-CCCCCCCHHHHCC
T ss_conf 1-3356642234210016278977042000-30132789998742666033032110-----4466-3101032255447
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECC
Q ss_conf 566432256555576442222-3344444111011020438888987179997687632316889999997498199847
Q gi|254780918|r 471 IAGHKNKHHKARCSVPNYQAF-AMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTP 549 (623)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P 549 (623)
..+-...+.-.......-... ....+-.-.+..|..++|.|+.|+++|-||-..-..++|..++++|+++.|..+-..|
T Consensus 261 GFDWsLhF~We~~~~eqr~sr~~Pt~PirtP~iAGGlfvidk~wF~~LGkyd~~mdiWGGEn~ElsfrvW~CGGslEIvP 340 (559)
T KOG3738 261 GFDWSLHFKWEQMQLEQRESRADPTAPIRTPAIAGGLFVIDKEWFNELGKYDMDMDIWGGENLELSFRVWQCGGSLEIVP 340 (559)
T ss_pred CCCEEEEEEEHHCCHHHHHHCCCCCCCCCCCCCCCEEEEECHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEE
T ss_conf 76517998701069777753159887644742025168960999987546675020017753478999986377568986
Q ss_pred CEEEEEECCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 549995177336--77668999999999999999988388841
Q gi|254780918|r 550 HADLYHDESRTR--KYDHEDPAKMIVFQEACQYLQKRWKKIIE 590 (623)
Q Consensus 550 ~a~v~H~es~sr--g~~~~~~~k~~~~~~~~~~~~~rW~~~~~ 590 (623)
.++|-|.=-+-- .+...+ ..-+.++.+.-.+-|.+..+
T Consensus 341 CSRVGHVFRkrHpy~FP~gs---~~ty~~NTkr~AEvWmDEYK 380 (559)
T KOG3738 341 CSRVGHVFRKRHPYTFPGGS---GNTYIKNTKRAAEVWMDEYK 380 (559)
T ss_pred CCCHHHHHHCCCCCCCCCCC---CCCHHHCCHHHHHHHHHHHH
T ss_conf 32011433115787589998---75221202688999999999
No 91
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=99.72 E-value=1.9e-16 Score=119.00 Aligned_cols=201 Identities=13% Similarity=0.148 Sum_probs=117.7
Q ss_pred EEEEECCCCH-HHHHHH----HHHHHHCCCCCCEEEEEECCCCCCHHHH----HHHHHHHHC---CCCCEEEEECCCCCC
Q ss_conf 9999537745-569999----9876420797515799714899816899----999998630---888279975788873
Q gi|254780918|r 327 SIIIPTYNHH-HLLKIC----LESIYHKTTYSSFEVIIIDNLSDDSKTF----LYLQKIQKK---YPNLRVITDNTHPFN 394 (623)
Q Consensus 327 SIIIp~~n~~-~~l~~c----l~Sl~~~t~y~~~EiivVdn~S~d~~t~----~~l~~~~~~---~~~~~~i~~~~~~~n 394 (623)
.|+||+||.. +.+..+ .+||.......+++|.|.||. +|++.. ..+..+..+ ..++.+++...+.+-
T Consensus 2 AvlvP~yNEd~~~v~~~l~a~~~sl~~~~~~~~f~v~vLsDs-~~p~~~~~E~~a~~~l~~~~~~~~~v~Yr~R~~n~g~ 80 (254)
T cd04191 2 AIVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFILSDT-RDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGR 80 (254)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC-CCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 799956889989999999999999986388565379998089-9757899999999999998478874598856866798
Q ss_pred HHHHHHHHHHH--CCCCEEEEECCCCEEECHHHHHHHHHHHC-CCCEEEEEEE--EECCCCCCCCCCCEEEECCEEECCC
Q ss_conf 38898987861--48974744058827828168899887742-8981699537--6646767567787044132540678
Q gi|254780918|r 395 YSRINNNATLH--AKGQYFCFLNNDTEVINGQWLSEMMGIAS-QPQVGAVGAR--LWYRRKKLWKRSKRLQHGGVIMGIN 469 (623)
Q Consensus 395 ~s~~~N~g~~~--a~geyilfLn~D~~v~~~~wL~~Ll~~~~-~~~vG~Vg~~--ll~~~~~~~~~d~~iqhaG~v~g~~ 469 (623)
-|...|.+++. +++||++.||.|. +.++++|.+|+.+++ +|++|+|... ..+.+ .. -+++|..+
T Consensus 81 KAGni~~~l~~~g~~yd~~~vlDAD~-~~~~d~l~~lv~~~e~dp~~glVQt~~~~~n~~--s~--~~r~~qf~------ 149 (254)
T cd04191 81 KAGNIADFCRRWGSRYDYMVVLDADS-LMSGDTIVRLVRRMEANPRAGIIQTAPKLIGAE--TL--FARLQQFA------ 149 (254)
T ss_pred CHHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCC--CH--HHHHHHHH------
T ss_conf 73779999995399846799975888-998699999999997698868972897464887--88--99988899------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCC---------HHHHHHHCCHHHHHHHHHH
Q ss_conf 6566432256555576442222334444411101102043888898717999---------7687632316889999997
Q gi|254780918|r 470 NIAGHKNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFD---------EKNTPVVFSDIDLCLRILE 540 (623)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfD---------E~~~~~~~eDvDlclR~~~ 540 (623)
.+. +.+. ...|.. .+......-.|.+.+||++.|.+.+||. +... -||.+..+++++
T Consensus 150 ---~~~--~~~~--~~~G~~----~w~~~~~~f~GhnAIiR~~af~~~~glp~L~~~g~~~g~~l---sED~~~a~~L~r 215 (254)
T cd04191 150 ---NRL--YGPV--FGRGLA----AWQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHIL---SHDFVEAALMRR 215 (254)
T ss_pred ---HHH--HHHH--HHHHHH----HHCCCCCCCCCCEEEEEHHHHHHHCCCCCCCCCCCCCCCCC---CHHHHHHHHHHH
T ss_conf ---986--0199--875687----75255334467314666087776417644678899788613---057999999998
Q ss_pred CCCEEEECCCEEE
Q ss_conf 4981998475499
Q gi|254780918|r 541 AGYRNVWTPHADL 553 (623)
Q Consensus 541 ~G~r~v~~P~a~v 553 (623)
+||++.|.|....
T Consensus 216 ~Gw~v~~~~~l~~ 228 (254)
T cd04191 216 AGWEVRLAPDLEG 228 (254)
T ss_pred CCCEEEEECCCCC
T ss_conf 7998998125664
No 92
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=99.72 E-value=6.1e-16 Score=115.92 Aligned_cols=192 Identities=18% Similarity=0.246 Sum_probs=129.1
Q ss_pred EEEECCCCCCHHHHHHHH----HHHHHCCC-CCEEEEEECCCCCHHHH--------HHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 999747589888999999----99982889-97489998775780679--------999999887579889998088885
Q gi|254780918|r 70 SVIMPVYKIKKEWLEMAI----ESVRSQIY-SHWELCIAEDCSGDIET--------VSLLKKYANMDSRIKVVFRAKNGH 136 (623)
Q Consensus 70 SIiip~yn~~~~~L~~~i----~Si~~Qty-~~~EliivdD~S~d~~~--------~~~l~~~~~~d~ri~~~~~~~n~g 136 (623)
-|+||+||.+...+..+| +||..... .++++.|.||+ +|++. .++.++.. ...+|.|.+++.|.|
T Consensus 2 AvlvP~yNEd~~~v~~~l~a~~~sl~~~~~~~~f~v~vLsDs-~~p~~~~~E~~a~~~l~~~~~-~~~~v~Yr~R~~n~g 79 (254)
T cd04191 2 AIVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFILSDT-RDPDIWLAEEAAWLDLCEELG-AQGRIYYRRRRENTG 79 (254)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC-CCHHHHHHHHHHHHHHHHHHC-CCCCEEEEECCCCCC
T ss_conf 799956889989999999999999986388565379998089-975789999999999999847-887459885686679
Q ss_pred -HHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCE--EE----ECCCCCCCH
Q ss_conf -64899999996--5998999976987527320799999987324755420222067589836--54----225667896
Q gi|254780918|r 137 -ISAASNSAAQL--ATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIR--SG----PYFKYDFNP 207 (623)
Q Consensus 137 -~~~a~N~~l~~--a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~--~~----p~fkp~~~~ 207 (623)
.+++.|.+++. +.+||++.||+|-+..+++|.+++..++.+|.+.+|-+....+..+... .. -+|-|-+..
T Consensus 80 ~KAGni~~~l~~~g~~yd~~~vlDAD~~~~~d~l~~lv~~~e~dp~~glVQt~~~~~n~~s~~~r~~qf~~~~~~~~~~~ 159 (254)
T cd04191 80 RKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIGAETLFARLQQFANRLYGPVFGR 159 (254)
T ss_pred CCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 87377999999539984679997588899869999999999769886897289746488788999888999860199875
Q ss_pred HH----HCCCCCCCHHHHHHHHHHHHHCCCCC-----CCCC---CCCCHHHHHHHHCCCCCCEEECCCCE
Q ss_conf 67----41478543145768999997188789-----8773---02741367886424875220068422
Q gi|254780918|r 208 EL----FHVHNMITHLGVYRTETFKKIGGFRE-----KFEG---AQDYDLVLRFLENIDLSQIIHIPRVL 265 (623)
Q Consensus 208 ~~----l~s~nyi~~~~~~rr~~~~~iGgf~~-----~~~~---~~D~Dl~lR~~~~~~~~~i~hip~vL 265 (623)
.+ ....+|.||..++|++.|.+.+|+.. .|.| ++|.+..+++..++. ++..+|...
T Consensus 160 G~~~w~~~~~~f~GhnAIiR~~af~~~~glp~L~~~g~~~g~~lsED~~~a~~L~r~Gw--~v~~~~~l~ 227 (254)
T cd04191 160 GLAAWQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGW--EVRLAPDLE 227 (254)
T ss_pred HHHHHCCCCCCCCCCEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC--EEEEECCCC
T ss_conf 68775255334467314666087776417644678899788613057999999998799--899812566
No 93
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.70 E-value=6.1e-16 Score=115.95 Aligned_cols=101 Identities=22% Similarity=0.280 Sum_probs=83.3
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 16999953774556999998764207975157997148998168999999986308882799757888733889898786
Q gi|254780918|r 325 LVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATL 404 (623)
Q Consensus 325 ~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~ 404 (623)
.+|+||+|+|....|.+||+||....+ ||||||++|+| .|.++.++. +++++... -.||+...|.|++
T Consensus 1 ~is~~i~t~Nee~~l~~~l~sl~~~~d----eiivvDs~StD-~T~~ia~~~-----~~~v~~~~--~~~~~~qrn~a~~ 68 (229)
T cd02511 1 TLSVVIITKNEERNIERCLESVKWAVD----EIIVVDSGSTD-RTVEIAKEY-----GAKVYQRW--WDGFGAQRNFALE 68 (229)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCC----EEEEEECCCCC-CHHHHHHHC-----CCEEEECC--CCCHHHHHHHHHH
T ss_conf 989999825848889999998764398----89999597987-529999984-----99089547--7887999999998
Q ss_pred HCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCE
Q ss_conf 1489747440588278281688998877428981
Q gi|254780918|r 405 HAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQV 438 (623)
Q Consensus 405 ~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~v 438 (623)
.|++|+|++||+| |.++++..+++......++.
T Consensus 69 ~a~~dWil~lDAD-E~~~~~l~~ei~~~~~~~~~ 101 (229)
T cd02511 69 LATNDWVLSLDAD-ERLTPELADEILALLATDDY 101 (229)
T ss_pred HCCCCEEEEECCC-CCCCHHHHHHHHHHHHCCCC
T ss_conf 3899889997110-12799999999999728997
No 94
>KOG3737 consensus
Probab=99.68 E-value=2.4e-16 Score=118.39 Aligned_cols=203 Identities=18% Similarity=0.250 Sum_probs=149.3
Q ss_pred HHHHHHCCCC---CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCE--EEEEECCCCCHHHHHHHHHHHHHH-CCCEEEEE
Q ss_conf 9998622458---97899974758988899999999982889974--899987757806799999998875-79889998
Q gi|254780918|r 57 LQNISQWQNK---PLISVIMPVYKIKKEWLEMAIESVRSQIYSHW--ELCIAEDCSGDIETVSLLKKYANM-DSRIKVVF 130 (623)
Q Consensus 57 ~~~~~~~~~~---P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~~--EliivdD~S~d~~~~~~l~~~~~~-d~ri~~~~ 130 (623)
.++...|.|+ |..||||..+|.--..|-+++.||+..+.+.. |||+|||-|..+++++-|++|... ...+++++
T Consensus 142 ~EECkhWdYpe~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP~~~l~eivlvDDfSdKehLkekLDeYv~~fnGlVkV~R 221 (603)
T KOG3737 142 QEECKHWDYPENLPTSSVVIVFHNEGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSDKEHLKEKLDEYVKLFNGLVKVFR 221 (603)
T ss_pred HHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 86653567855687523999993686178999999998328387543078844678618789999999998567799984
Q ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEEC-------CCC
Q ss_conf 0888856489999999659989999769875273207999999873247554202220675898365422-------566
Q gi|254780918|r 131 RAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPY-------FKY 203 (623)
Q Consensus 131 ~~~n~g~~~a~N~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~-------fkp 203 (623)
+++..|+-.|+-.|.+.|+||.++|||+.+.+.-+||--++..|.++..+.-| .=-|.|+.+.....|. ++-
T Consensus 222 ne~REGLI~aRSiGA~~atGeV~ifLDAHCEVntNWlpPLlAPI~rdRtvmTV-P~IDgId~n~~EyrpvyG~dn~h~rG 300 (603)
T KOG3737 222 NERREGLIQARSIGAQKATGEVLIFLDAHCEVNTNWLPPLLAPISRDRTVMTV-PLIDGIDGNTYEYRPVYGGDNDHARG 300 (603)
T ss_pred CCHHHHHHHHHCCCHHHCCCCEEEEEECCEEEECCCCCCCCCCCCCCCEEEEE-EEEEEECCCCEEEEECCCCCCHHHCC
T ss_conf 32032223331031021246089998244143045365002531168537887-41540358823786336886255403
Q ss_pred --CCCH-----------HHH--------CCCCCCCHHHHHHHHHHHHHCCCCCCCC--CCCCCHHHHHHHHCCCCCCEEE
Q ss_conf --7896-----------674--------1478543145768999997188789877--3027413678864248752200
Q gi|254780918|r 204 --DFNP-----------ELF--------HVHNMITHLGVYRTETFKKIGGFREKFE--GAQDYDLVLRFLENIDLSQIIH 260 (623)
Q Consensus 204 --~~~~-----------~~l--------~s~nyi~~~~~~rr~~~~~iGgf~~~~~--~~~D~Dl~lR~~~~~~~~~i~h 260 (623)
+|.. ..+ +|-...|.++++.|+.|.++|.||+++. |.+.|+|.+++.+.+ +.|..
T Consensus 301 ifeWgmLyKe~~~t~rE~r~RkhnsePyRSPthAGGLfAInRe~F~ELG~YDpgLqiWGGEnfElSfKIWQCG--G~i~f 378 (603)
T KOG3737 301 IFEWGMLYKEVPLTPREKRLRKHNSEPYRSPTHAGGLFAINREFFFELGLYDPGLQIWGGENFELSFKIWQCG--GKILF 378 (603)
T ss_pred HHHHHHEECCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCCCEEECCCCEEEEEEEEEEC--CEEEE
T ss_conf 2013330114778878887664058877786444643323288999854678743564474416888887508--77899
Q ss_pred CC
Q ss_conf 68
Q gi|254780918|r 261 IP 262 (623)
Q Consensus 261 ip 262 (623)
+|
T Consensus 379 VP 380 (603)
T KOG3737 379 VP 380 (603)
T ss_pred EE
T ss_conf 98
No 95
>PTZ00260 glycosyl transferase group 2; Provisional
Probab=99.63 E-value=1.4e-14 Score=107.57 Aligned_cols=209 Identities=19% Similarity=0.186 Sum_probs=118.3
Q ss_pred CCEEEEEECCCCHHHHH----HHHHHHHHCCC---CCCEEEEEECCCCCCHHHHHHHHHHHHCCC--CCEEEEECCCCCC
Q ss_conf 81699995377455699----99987642079---751579971489981689999999863088--8279975788873
Q gi|254780918|r 324 PLVSIIIPTYNHHHLLK----ICLESIYHKTT---YSSFEVIIIDNLSDDSKTFLYLQKIQKKYP--NLRVITDNTHPFN 394 (623)
Q Consensus 324 P~VSIIIp~~n~~~~l~----~cl~Sl~~~t~---y~~~EiivVdn~S~d~~t~~~l~~~~~~~~--~~~~i~~~~~~~n 394 (623)
--.|||||+||..+-|. .|++-|.++.. --.||||||||||+|. |.+...++.++++ +++++....+ -|
T Consensus 79 ~~lSvVIPAYNEe~RL~~mL~e~~~yL~~~~~~~~~~~yEIIVVDDGStD~-T~eVa~~~~~~~~~~~IRvl~l~kN-rG 156 (336)
T PTZ00260 79 VYLSIIIPAYNEENRLGRTLEATFKHFESRNREDPKFIYEIIIINDGSKDK-TLKVAKKYWKSINNKNFRLLTYNRN-RG 156 (336)
T ss_pred EEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC-HHHHHHHHHHHCCCCEEEEEECCCC-CC
T ss_conf 379999806773665488999999999861045889867999981699988-6999999999769980999971677-78
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHH---CCCCEEEE-EEEEECCCCCCCCCCCEEEECCEEECCCC
Q ss_conf 388989878614897474405882782816889988774---28981699-53766467675677870441325406786
Q gi|254780918|r 395 YSRINNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIA---SQPQVGAV-GARLWYRRKKLWKRSKRLQHGGVIMGINN 470 (623)
Q Consensus 395 ~s~~~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~---~~~~vG~V-g~~ll~~~~~~~~~d~~iqhaG~v~g~~~ 470 (623)
.+.+.-.|+.+|+|+|++|.|+|-. ....-+++|...+ ...+.++| |.+.-- ...+.+++-.. +..
T Consensus 157 KG~AVr~Gml~ArG~~ILfaDADgA-t~i~dl~kL~~~l~~~~~~~~~vviGSRahl-----~~~~~v~~rs~----~R~ 226 (336)
T PTZ00260 157 KGGAVKLGMLASAGKYQLMMDADGA-TDLNEFEKLEDILIKITQNGLGIVAGSRNHL-----VKEDVVVQRKW----YRN 226 (336)
T ss_pred CHHHHHHHHHHHCCCEEEEEECCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCCCC-----CCCCCCCCCHH----HHH
T ss_conf 4699999999817988999947889-8978999999999743237944998346343-----56774035519----999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCC
Q ss_conf 56643225655557644222233444441110110204388889871799976876323168899999974981998475
Q gi|254780918|r 471 IAGHKNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPH 550 (623)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~ 550 (623)
..++.+...- +.....++.-.--.+=+++|++...+ |.........-|+++-+++++.|+++.=.|=
T Consensus 227 ~l~~gFh~lV-----------~~l~~~~I~DTQCGFKlF~r~~a~~i--f~~~~~~gwaFDVElL~lA~~~g~~I~EvPV 293 (336)
T PTZ00260 227 ILMHCFHFII-----------NTICGVRLKDTQCGFKLFTRNTARII--FPVLHIERWAFDVEIFMIAQKLNVPISEVPV 293 (336)
T ss_pred HHHHHHHHHH-----------HHHCCCCCCCCCCCEEEECHHHHHHH--HHHHEECCEEEHHHHHHHHHHCCCCEEEEEE
T ss_conf 9999999999-----------99806885306565045738999999--8763237567609999999987994799624
Q ss_pred EEEEEECC
Q ss_conf 49995177
Q gi|254780918|r 551 ADLYHDES 558 (623)
Q Consensus 551 a~v~H~es 558 (623)
...|.++
T Consensus 294 -~W~e~~G 300 (336)
T PTZ00260 294 -KWEEVEG 300 (336)
T ss_pred -EEEECCC
T ss_conf -8898899
No 96
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=99.63 E-value=1.4e-14 Score=107.61 Aligned_cols=212 Identities=15% Similarity=0.140 Sum_probs=128.5
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHCCC--CCCEEEEEECCCCCCHHHHHHHHHHHHC-CCCCEEEEECCCCCCHHH
Q ss_conf 8888169999537745569999987642079--7515799714899816899999998630-888279975788873388
Q gi|254780918|r 321 NPPPLVSIIIPTYNHHHLLKICLESIYHKTT--YSSFEVIIIDNLSDDSKTFLYLQKIQKK-YPNLRVITDNTHPFNYSR 397 (623)
Q Consensus 321 ~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~--y~~~EiivVdn~S~d~~t~~~l~~~~~~-~~~~~~i~~~~~~~n~s~ 397 (623)
.|.+++|||||+||..+.+..+++.+.+... ..+||||+|||||+|+ |.+.++++.+. .++++.+. ...+||..+
T Consensus 3 ~pmkkiSIViP~yNEe~~i~~~~~~~~~~l~~~~~~~EiI~VDDgS~D~-T~~~l~~l~~~~~~~v~~i~-lsRNfG~~~ 80 (324)
T PRK10714 3 HPIKKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDN-SAEMLVEASQAEDSHIISIL-LNRNYGQHS 80 (324)
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC-HHHHHHHHHHHCCCCEEEEE-CCCCCCHHH
T ss_conf 9998699998017778779999999999998679998999998999867-79999998630599689998-988988568
Q ss_pred HHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCC
Q ss_conf 98987861489747440588278281688998877428981699537664676756778704413254067865664322
Q gi|254780918|r 398 INNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNK 477 (623)
Q Consensus 398 ~~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~ 477 (623)
+.-.|+++|+||+++.+|+|.+ ..|..+.+|++..+ .+.-+|++.--.. .+..+. ......+
T Consensus 81 Ai~aGl~~a~Gd~vi~mD~DLQ-dpPe~Ip~li~~~~-~G~DvV~~~r~~r------~~~~~r---------~~~s~l~- 142 (324)
T PRK10714 81 AIMAGFSHVTGDLIITLDADLQ-NPPEEIPRLVAKAD-EGYDVVGTVRQNR------QDSWFR---------KTASKMI- 142 (324)
T ss_pred HHHHHHHHCCCCEEEEECCCCC-CCHHHHHHHHHHHH-CCCCEEEEEECCC------CCCHHH---------HHHHHHH-
T ss_conf 9999987347998999868887-59889999999870-4886899988888------775788---------9999999-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEEC
Q ss_conf 56555576442222334444411101102043888898717999768763231688999999749819984754999517
Q gi|254780918|r 478 HHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHDE 557 (623)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~e 557 (623)
|.........+..--....-+++|++.+++-.+.|..-.. .. -+...|++....| +++.
T Consensus 143 ----------~~l~~~~~~~~~~d~~~~frl~~r~vv~~l~~~~e~~~f~---~g----l~~~~g~~~~~i~----~~~~ 201 (324)
T PRK10714 143 ----------NRLIQRTTGKAMGDYGCMLRAYRRHIVDAMLHCHERSTFI---PI----LANIFARRAIEIP----VHHA 201 (324)
T ss_pred ----------HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHH---HH----HHHHCCCCEEEEE----EECC
T ss_conf ----------9999985399878753124413799999999637865069---99----9997287429998----5047
Q ss_pred CCCCCCCCCCHHHHHH
Q ss_conf 7336776689999999
Q gi|254780918|r 558 SRTRKYDHEDPAKMIV 573 (623)
Q Consensus 558 s~srg~~~~~~~k~~~ 573 (623)
.+..|....+-.|..+
T Consensus 202 ~R~~G~Sky~~~kl~~ 217 (324)
T PRK10714 202 EREFGDSKYSFMRLIN 217 (324)
T ss_pred CCCCCCCCCCHHHHHH
T ss_conf 6279988897899999
No 97
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.62 E-value=9.4e-15 Score=108.66 Aligned_cols=105 Identities=30% Similarity=0.398 Sum_probs=84.7
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 88169999537745569999987642079751579971489981689999999863088827997578887338898987
Q gi|254780918|r 323 PPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNA 402 (623)
Q Consensus 323 ~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g 402 (623)
.|+||||||+||....|.+||+|+.+|+ ++++|||||||||+|+ |.+.++.+....+.+... ......|.+.+.|.|
T Consensus 2 ~~~isiiip~~n~~~~l~~~l~s~~~q~-~~~~eiivvdd~s~d~-t~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~ 78 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLNQT-YKDFEIIVVDDGSTDG-TTEIAIEYGAKDVRVIRL-INERNGGLGAARNAG 78 (291)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHC-CCCCEEEEEECCCCCC-HHHHHHHHCCCCCCEEEE-CCCCCCCHHHHHHHH
T ss_conf 9639999954878888999999999720-7984899996999886-799999844445517885-265676999999999
Q ss_pred HHHCCCCEEEEECCCCEEECHHHHHHHHHH
Q ss_conf 861489747440588278281688998877
Q gi|254780918|r 403 TLHAKGQYFCFLNNDTEVINGQWLSEMMGI 432 (623)
Q Consensus 403 ~~~a~geyilfLn~D~~v~~~~wL~~Ll~~ 432 (623)
+..+.|+|++|++.|. . .+.++..++..
T Consensus 79 ~~~~~~~~~~~~d~d~-~-~~~~~~~~~~~ 106 (291)
T COG0463 79 LEYARGDYIVFLDADD-Q-HPPELIPLVAA 106 (291)
T ss_pred HHHCCCCEEEEECCCC-C-CCHHHHHHHHH
T ss_conf 9965888799973666-7-87778999863
No 98
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.59 E-value=2.9e-14 Score=105.66 Aligned_cols=116 Identities=18% Similarity=0.287 Sum_probs=95.4
Q ss_pred EEEECCCCHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 99953774556999998764207-97515799714899816899999998630888279975788873388989878614
Q gi|254780918|r 328 IIIPTYNHHHLLKICLESIYHKT-TYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHA 406 (623)
Q Consensus 328 IIIp~~n~~~~l~~cl~Sl~~~t-~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a 406 (623)
||||+||+.+.+..++++|.++. .+.++|||+|||||+| +|.+.++++.+..+.++++... .+.|++.+.+.|++.|
T Consensus 1 IiIP~yNE~~~i~~~l~~i~~~~~~~~~~eiiiVddgS~D-~T~~i~~~~~~~~~~~~~i~~~-~n~G~g~ai~~G~~~a 78 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTD-GTAEIARELAARVPRVRVIRLS-RNFGKGAAVRAGFKAA 78 (185)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC-CHHHHHHHHHHCCEEEEEEECC-CCCCCHHHHHHHHHHC
T ss_conf 6998448788999999999987535798799999899962-0788888764233049986324-5777058999888752
Q ss_pred CCCEEEEECCCCEEECHHHHHHHHHHHCCCCE-EEEEEEEE
Q ss_conf 89747440588278281688998877428981-69953766
Q gi|254780918|r 407 KGQYFCFLNNDTEVINGQWLSEMMGIASQPQV-GAVGARLW 446 (623)
Q Consensus 407 ~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~v-G~Vg~~ll 446 (623)
++||++++|+|... .|+.+..|+......+. -+.|.|..
T Consensus 79 ~~d~i~~~D~D~~~-~~~~i~~~i~~~~~~~~d~V~gsR~~ 118 (185)
T cd04179 79 RGDIVVTMDADLQH-PPEDIPKLLEKLLEGGADVVIGSRFV 118 (185)
T ss_pred CCCEEEEECCCCCC-CHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 58889992799870-99999999999997898599999760
No 99
>KOG2978 consensus
Probab=99.57 E-value=1.6e-13 Score=101.07 Aligned_cols=210 Identities=19% Similarity=0.243 Sum_probs=103.3
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCC--CCCEEEEEECCCCCCHHHHHHHHHHHHCCC--CCEEEEECCCCCCHHHHH
Q ss_conf 8169999537745569999987642079--751579971489981689999999863088--827997578887338898
Q gi|254780918|r 324 PLVSIIIPTYNHHHLLKICLESIYHKTT--YSSFEVIIIDNLSDDSKTFLYLQKIQKKYP--NLRVITDNTHPFNYSRIN 399 (623)
Q Consensus 324 P~VSIIIp~~n~~~~l~~cl~Sl~~~t~--y~~~EiivVdn~S~d~~t~~~l~~~~~~~~--~~~~i~~~~~~~n~s~~~ 399 (623)
++-|||+||||..+.+.-|+.-+..... -.++|||||||+|+|+ |.+..+.+++.+. ++.+. .-.+..|.+.+.
T Consensus 3 ~kYsvilPtYnEk~Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDG-t~~~a~~L~k~yg~d~i~l~-pR~~klGLgtAy 80 (238)
T KOG2978 3 IKYSVILPTYNEKENLPIITRLIAKYMSEEGKKYEIIIVDDASPDG-TQEVAKALQKIYGEDNILLK-PRTKKLGLGTAY 80 (238)
T ss_pred CCEEEEECCCCCCCCCEEEHHHHHHHHHHHCCCEEEEEEECCCCCC-CHHHHHHHHHHHCCCCEEEE-ECCCCCCCHHHH
T ss_conf 5246884145677787165999875435536864799983899976-09999999998589818998-636766501787
Q ss_pred HHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCC
Q ss_conf 98786148974744058827828168899887742898169953766467675677870441325406786566432256
Q gi|254780918|r 400 NNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHH 479 (623)
Q Consensus 400 N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~ 479 (623)
-.|+++|+|+|++++|.|.. ..|..+.+|......-+..+|.+.-+- +++ |..|| ..+..
T Consensus 81 ~hgl~~a~g~fiviMDaDls-HhPk~ipe~i~lq~~~~~div~GTRYa-------~~g---------gV~gW---~mkRk 140 (238)
T KOG2978 81 IHGLKHATGDFIVIMDADLS-HHPKFIPEFIRLQKEGNYDIVLGTRYA-------GGG---------GVYGW---DMKRK 140 (238)
T ss_pred HHHHHHCCCCEEEEEECCCC-CCCHHHHHHHHHHHCCCCCEEEEEEEC-------CCC---------CEECC---HHHHH
T ss_conf 75665436876999807667-891567999998650575256630375-------998---------52056---03578
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHC-CHHHHHHHHHHCCCEEEECCCEEEEEECC
Q ss_conf 55557644222233444441110110204388889871799976876323-16889999997498199847549995177
Q gi|254780918|r 480 KARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVF-SDIDLCLRILEAGYRNVWTPHADLYHDES 558 (623)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~-eDvDlclR~~~~G~r~v~~P~a~v~H~es 558 (623)
- .+....+..+....-++|.+||.+=+.+|++.+.+= .|. -..+| --.++-.|+++.||.+-=+|.+.+...++
T Consensus 141 ~--IS~gAn~la~~ll~~~~sdltGsFrLykk~vl~~li--~e~-vSkGyvfqmEll~ra~~~~y~IgEvPitFvdR~~G 215 (238)
T KOG2978 141 I--ISRGANFLARILLNPGVSDLTGSFRLYKKEVLEKLI--EES-VSKGYVFQMELLARARQHGYTIGEVPITFVDRTYG 215 (238)
T ss_pred H--HHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHH--HHH-HCCCHHHHHHHHHHCCCCCCEEEECCEEEEEECCC
T ss_conf 8--754467788876168876575511303588988658--976-43540225889973535694676556699860134
Q ss_pred CC
Q ss_conf 33
Q gi|254780918|r 559 RT 560 (623)
Q Consensus 559 ~s 560 (623)
.|
T Consensus 216 eS 217 (238)
T KOG2978 216 ES 217 (238)
T ss_pred CC
T ss_conf 33
No 100
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=99.57 E-value=6.4e-13 Score=97.43 Aligned_cols=246 Identities=16% Similarity=0.216 Sum_probs=147.2
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC-EEEEEECCCCCHHHHHHHH
Q ss_conf 789998523799889999999986224589789997475898889999999998288997-4899987757806799999
Q gi|254780918|r 38 YREWSSLFHDTSPQFTKKILQNISQWQNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSH-WELCIAEDCSGDIETVSLL 116 (623)
Q Consensus 38 y~~W~~~~~~~~~~~~~~~~~~~~~~~~~P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~-~EliivdD~S~d~~~~~~l 116 (623)
-..|+..+....++.. + .+....+...+||||+|++| +++.+..-++++..--++. -|+|++|++|+| .|.++.
T Consensus 5 ~~~W~~~rt~~~~~w~--~-~~l~~~K~~~~VSVvlPalN-Ee~TVg~vv~~i~~~~~~lvDEviVvDsgStD-~Ta~~A 79 (307)
T PRK13915 5 VEAWLEDRSWHRPDWT--I-GELEAAKAGRTVSVVLPALN-EEATVGKVVDSIRPLLVGLVDELIVIDSGSTD-DTAIRA 79 (307)
T ss_pred HHHHHHHCCCCCCCCC--H-HHHHHHHCCCEEEEEECCCC-HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CHHHHH
T ss_conf 8999970878876789--8-99998607986999934776-57779999999988505887569997799976-589999
Q ss_pred HHHHHHCCCEEEEEC-------CCCCCHHHHHHHHHHHCCCCEEEEECCCCC-CCCCHHHHHHHHHHHCCCCCCCCCCCE
Q ss_conf 998875798899980-------888856489999999659989999769875-273207999999873247554202220
Q gi|254780918|r 117 KKYANMDSRIKVVFR-------AKNGHISAASNSAAQLATSEWLALLDHDDL-LHPTALYYVADAINNNPNAEIIYSDED 188 (623)
Q Consensus 117 ~~~~~~d~ri~~~~~-------~~n~g~~~a~N~~l~~a~Ge~i~~lD~DD~-l~p~~L~~~~~~l~~~p~~~~iYsDe~ 188 (623)
.++. .+++.. +.+.|.+.|+-.++..++||+|+|+|+|-. ++|+.+..++..+-.+|+++++-+..+
T Consensus 80 ~~aG-----A~V~~~~~ilp~~~~~~GKGealW~~l~~~~gDivvfvDaDi~~~~p~~v~~Ll~Pll~~p~v~~vKg~Y~ 154 (307)
T PRK13915 80 AAAG-----ARVVSREEILPEVPPRPGKGEALWRSLAATRGDIVVFVDADLINPHPMFVPGLVGPLLTDPGVHLVKAFYR 154 (307)
T ss_pred HHHC-----CEEEEHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEE
T ss_conf 9819-----97982345064579989971999999860677789997067676887899987401246997338877531
Q ss_pred EE---------CCCCCEEEECCCCC---CCHHHH-CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 67---------58983654225667---896674-147854314576899999718878987730274136788642487
Q gi|254780918|r 189 KI---------NENQIRSGPYFKYD---FNPELF-HVHNMITHLGVYRTETFKKIGGFREKFEGAQDYDLVLRFLENIDL 255 (623)
Q Consensus 189 ~i---------~~~g~~~~p~fkp~---~~~~~l-~s~nyi~~~~~~rr~~~~~iGgf~~~~~~~~D~Dl~lR~~~~~~~ 255 (623)
.. ..+|+...-.-||= +-|++- +.+|- +.-.+.||++++++ -|..+|.- +--+++-+....+.
T Consensus 155 Rpl~~~~~~~~~gGGRVTEL~arPLL~~~~PeL~~f~QPL-sGE~A~rr~~l~~l-~f~~gyGv--Eig~Lid~~~~~G~ 230 (307)
T PRK13915 155 RPLRVSDGDDATGGGRVTELVARPLLALLRPELAGVLQPL-GGEYAGRRELLESL-PFAPGYGV--EIGLLIDTLDRLGL 230 (307)
T ss_pred CCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHCC-CCCCCCCH--HHHHHHHHHHHHCC
T ss_conf 3445566767889953664148789998857664204778-60267689998569-88888744--35689999987484
Q ss_pred CCEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 522006842279953388533880134689987899999999741334322
Q gi|254780918|r 256 SQIIHIPRVLYHWRMHDNSTAQKIGNKNYAGKAGERALNEHFQRTGIAAKA 306 (623)
Q Consensus 256 ~~i~hip~vLy~~R~~~~s~~~~~~~k~~~~~a~~~ai~~~l~R~g~~~~~ 306 (623)
..|.-+.- -.|.|........... +...+...+.|.|.+...
T Consensus 231 ~~iaQVDl---g~r~Hrhq~l~~L~~M------a~~i~~t~~~R~~~~~~~ 272 (307)
T PRK13915 231 DAIAQVDL---GVRAHRHQPLRALGRM------ARQVIATLLSRLGIPDSG 272 (307)
T ss_pred CEEEEEEC---CCCCCCCCCHHHHHHH------HHHHHHHHHHHCCCCCCC
T ss_conf 61799764---7502379978999999------999999999970887567
No 101
>KOG2978 consensus
Probab=99.56 E-value=1.9e-13 Score=100.63 Aligned_cols=192 Identities=21% Similarity=0.265 Sum_probs=128.2
Q ss_pred CCCEEEEECCCCCCH--HHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHH--HHCCCEEEEECCCCCCHHHHH
Q ss_conf 897899974758988--8999999999828899748999877578067999999988--757988999808888564899
Q gi|254780918|r 66 KPLISVIMPVYKIKK--EWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYA--NMDSRIKVVFRAKNGHISAAS 141 (623)
Q Consensus 66 ~P~iSIiip~yn~~~--~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~--~~d~ri~~~~~~~n~g~~~a~ 141 (623)
.++-|||+|+||..+ +.+...+.-...+.-.+||+|||||+|+|. +.+..+.++ -.+++|.+..+....|++.|.
T Consensus 2 ~~kYsvilPtYnEk~Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDG-t~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy 80 (238)
T KOG2978 2 SIKYSVILPTYNEKENLPIITRLIAKYMSEEGKKYEIIIVDDASPDG-TQEVAKALQKIYGEDNILLKPRTKKLGLGTAY 80 (238)
T ss_pred CCCEEEEECCCCCCCCCEEEHHHHHHHHHHHCCCEEEEEEECCCCCC-CHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf 85246884145677787165999875435536864799983899976-09999999998589818998636766501787
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCC----CCCCEEECCCCCEEEECCCCCCCHH---------
Q ss_conf 999996599899997698752732079999998732475542----0222067589836542256678966---------
Q gi|254780918|r 142 NSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEII----YSDEDKINENQIRSGPYFKYDFNPE--------- 208 (623)
Q Consensus 142 N~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~i----YsDe~~i~~~g~~~~p~fkp~~~~~--------- 208 (623)
-.|++.|+|+|++.+|+|---+|..+-++.+...++ +.|++ |+++..+ . .|+.-
T Consensus 81 ~hgl~~a~g~fiviMDaDlsHhPk~ipe~i~lq~~~-~~div~GTRYa~~ggV------~------gW~mkRk~IS~gAn 147 (238)
T KOG2978 81 IHGLKHATGDFIVIMDADLSHHPKFIPEFIRLQKEG-NYDIVLGTRYAGGGGV------Y------GWDMKRKIISRGAN 147 (238)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCC-CCCEEEEEEECCCCCE------E------CCHHHHHHHHHHHH
T ss_conf 756654368769998076678915679999986505-7525663037599852------0------56035788754467
Q ss_pred ----HHC---CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC----HHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCC
Q ss_conf ----741---47854314576899999718878987730274----1367886424875220068422799533885338
Q gi|254780918|r 209 ----LFH---VHNMITHLGVYRTETFKKIGGFREKFEGAQDY----DLVLRFLENIDLSQIIHIPRVLYHWRMHDNSTAQ 277 (623)
Q Consensus 209 ----~l~---s~nyi~~~~~~rr~~~~~iGgf~~~~~~~~D~----Dl~lR~~~~~~~~~i~hip~vLy~~R~~~~s~~~ 277 (623)
.|+ +.+..|.+.++++++++..- .+. .++-| +++.|+-+. .-.|.-+|-.. +=|...+|-.+
T Consensus 148 ~la~~ll~~~~sdltGsFrLykk~vl~~li--~e~--vSkGyvfqmEll~ra~~~--~y~IgEvPitF-vdR~~GeSKLg 220 (238)
T KOG2978 148 FLARILLNPGVSDLTGSFRLYKKEVLEKLI--EES--VSKGYVFQMELLARARQH--GYTIGEVPITF-VDRTYGESKLG 220 (238)
T ss_pred HHHHHHCCCCCCCCCCEEEEEHHHHHHHHH--HHH--HCCCHHHHHHHHHHCCCC--CCEEEECCEEE-EEECCCCCCCC
T ss_conf 788876168876575511303588988658--976--435402258899735356--94676556699-86013433235
Q ss_pred C
Q ss_conf 8
Q gi|254780918|r 278 K 278 (623)
Q Consensus 278 ~ 278 (623)
.
T Consensus 221 ~ 221 (238)
T KOG2978 221 G 221 (238)
T ss_pred H
T ss_conf 7
No 102
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=99.51 E-value=1.1e-13 Score=102.19 Aligned_cols=164 Identities=19% Similarity=0.230 Sum_probs=111.6
Q ss_pred EEEECCCCHHHHHHHHHHHHH---CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 999537745569999987642---07975157997148998168999999986308882799757888733889898786
Q gi|254780918|r 328 IIIPTYNHHHLLKICLESIYH---KTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATL 404 (623)
Q Consensus 328 IIIp~~n~~~~l~~cl~Sl~~---~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~ 404 (623)
||||+||+.+.+..+++.|.. +. ..++|||||||+|+| .|.+.++++..+.++++++... .+.|++.+.-.|++
T Consensus 1 IIIP~yNEe~~I~~~i~~i~~~~~~~-~~~~eIivVDD~StD-~T~~i~~~l~~~~~~v~~i~~~-~N~G~g~Ai~~g~~ 77 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESL-GYDYEIIFVDDGSTD-RTLEILRELAARDPRVKVIRLS-RNFGQQAALLAGLD 77 (181)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHHC-CCCEEEEEEECCCCC-CCHHHHHCCCCCCCCEEEEECC-CCCCHHHHHHHHHH
T ss_conf 99961678887999999999998655-998799999899975-6245420121233320453145-57644678898998
Q ss_pred HCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEE-EEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCC
Q ss_conf 148974744058827828168899887742898169-9537664676756778704413254067865664322565555
Q gi|254780918|r 405 HAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGA-VGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARC 483 (623)
Q Consensus 405 ~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~-Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~ 483 (623)
.|+|||++++|.|-. .+|.-+..|+..... +.-+ +|.|..- .+..+.. +....+
T Consensus 78 ~a~~d~i~~~D~D~q-~~p~~i~~l~~~~~~-~~D~V~gsR~~r-------~~~~~r~---------~~s~~~------- 132 (181)
T cd04187 78 HARGDAVITMDADLQ-DPPELIPEMLAKWEE-GYDVVYGVRKNR-------KESWLKR---------LTSKLF------- 132 (181)
T ss_pred HCCCCEEEECCCCCC-CCHHHHHHHHHHHHC-CCEEEEEEEECC-------CCCHHHH---------HHHHHH-------
T ss_conf 556974775189998-299999999999975-991999997078-------8768999---------999999-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHH
Q ss_conf 7644222233444441110110204388889871799976
Q gi|254780918|r 484 SVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEK 523 (623)
Q Consensus 484 ~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~ 523 (623)
.. .........+.-.++.+-+++|++++++--+.+.
T Consensus 133 ---~~-l~~~l~~~~~~D~~~gfr~~~r~~~~~i~~~~~~ 168 (181)
T cd04187 133 ---YR-LINKLSGVDIPDNGGDFRLMDRKVVDALLLLPER 168 (181)
T ss_pred ---HH-HHHHHHCCCCCCCCCCEEEEEHHHHHHHHHCCCC
T ss_conf ---99-9999879990078928699889999998748998
No 103
>TIGR01556 rhamnosyltran rhamnosyltransferase; InterPro: IPR006446 This subfamily is composed of sequences from the gamma proteobacteria that function as L-rhamnosyltransferases in the synthesis of their respective surface polysaccharides. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In Pseudomonas aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids . .
Probab=99.51 E-value=1.7e-12 Score=94.78 Aligned_cols=185 Identities=22% Similarity=0.224 Sum_probs=123.7
Q ss_pred CCCC---CHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHC---
Q ss_conf 7589---8889999999998288997489998775780679999999887579889998088885648999999965---
Q gi|254780918|r 75 VYKI---KKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQLA--- 148 (623)
Q Consensus 75 ~yn~---~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l~~a--- 148 (623)
+||+ +.+.|++.+.|+..|. ..+|+||++|-. +...-+++......+|.++.+..|.|+++|.|.|++.+
T Consensus 2 tfNPGdddl~~L~~l~~~l~~Q~---~~~i~vDN~~~s-~~~~~l~~~~~~~~~i~~i~ls~n~GiA~AqN~Gl~~~~~~ 77 (291)
T TIGR01556 2 TFNPGDDDLEVLKELITSLKKQV---DKIIVVDNSSLS-EIRSELKELLAKKEKIKLISLSDNEGIAAAQNLGLKASFKK 77 (291)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCC---EEEEEEECCCCC-CCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 54885478999999998765259---089999789543-32057899985007768996378541288987999999873
Q ss_pred CCCEEEEECCCCCCCCCH----HHHHHHHHHHCC-CCCCCCCCCEEECCCCCEEEECCC-----------CCCCHHHHCC
Q ss_conf 998999976987527320----799999987324-755420222067589836542256-----------6789667414
Q gi|254780918|r 149 TSEWLALLDHDDLLHPTA----LYYVADAINNNP-NAEIIYSDEDKINENQIRSGPYFK-----------YDFNPELFHV 212 (623)
Q Consensus 149 ~Ge~i~~lD~DD~l~p~~----L~~~~~~l~~~p-~~~~iYsDe~~i~~~g~~~~p~fk-----------p~~~~~~l~s 212 (623)
..+.|.++|+|-++..+. |....+.+++.. ++.++-. ..+|.+..+..|..+ ++-.-....+
T Consensus 78 ~~~~vlLlDqDS~~~~~~~~~fl~~~~~~l~~~~~~~~~~GP--~~~Dr~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~ 155 (291)
T TIGR01556 78 GVEKVLLLDQDSRPAEDGVNKFLAKELKLLSEEKLQAVAVGP--SFFDRKTSRRLPIVKLKGNLLLKKIKVDEKKTPVKT 155 (291)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECC--EEEECCCCEECCCEEECCCCCEEEEEECCCCCCEEE
T ss_conf 896688851278432034899999998865422662799878--257768870536165126620025532388983588
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHCCCCCCEEECCCC-EEE
Q ss_conf 785431457689999971887898773-0274136788642487522006842-279
Q gi|254780918|r 213 HNMITHLGVYRTETFKKIGGFREKFEG-AQDYDLVLRFLENIDLSQIIHIPRV-LYH 267 (623)
Q Consensus 213 ~nyi~~~~~~rr~~~~~iGgf~~~~~~-~~D~Dl~lR~~~~~~~~~i~hip~v-Ly~ 267 (623)
.--|..-+++++++++.+|-++|++=. --|.|+++|+.... -.++=.|.+ |-|
T Consensus 156 ~flIaSGtli~~E~~~~~G~m~E~lFIDyvDtEwslR~~~~g--~~ly~~~d~~l~H 210 (291)
T TIGR01556 156 DFLIASGTLIKKEVLKSVGMMDEELFIDYVDTEWSLRALNYG--IKLYIIPDIVLEH 210 (291)
T ss_pred EEEEECHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHCC--CEEEEECCEEEEE
T ss_conf 878612267999998725764203321334153688888778--2488517568985
No 104
>KOG2977 consensus
Probab=99.34 E-value=1.8e-11 Score=88.50 Aligned_cols=107 Identities=24% Similarity=0.319 Sum_probs=84.6
Q ss_pred CEEEEECCCCCC---HHHHHHHHHHHHHCCCC----CEEEEEECCCCCHHHHHHHHHHHH--HHCCCEEEEECCCCCCHH
Q ss_conf 789997475898---88999999999828899----748999877578067999999988--757988999808888564
Q gi|254780918|r 68 LISVIMPVYKIK---KEWLEMAIESVRSQIYS----HWELCIAEDCSGDIETVSLLKKYA--NMDSRIKVVFRAKNGHIS 138 (623)
Q Consensus 68 ~iSIiip~yn~~---~~~L~~~i~Si~~Qty~----~~EliivdD~S~d~~~~~~l~~~~--~~d~ri~~~~~~~n~g~~ 138 (623)
-+|||||.||.+ ...|.+|++++....-. +||++||||||+|. |.++.-++. ..+..|+++....|.|-+
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~le~ry~~~~~F~~eiiVvddgs~d~-T~~~a~k~s~K~~~d~irV~~l~~nrgKG 146 (323)
T KOG2977 68 YLSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDS-TVEVALKFSRKLGDDNIRVIKLKKNRGKG 146 (323)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHH-HHHHHHHHHHHCCCCEEEEEEHHCCCCCC
T ss_conf 15899845786441577999999999887425877751489947997306-99999999987186619985211147887
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 8999999965998999976987527320799999987
Q gi|254780918|r 139 AASNSAAQLATSEWLALLDHDDLLHPTALYYVADAIN 175 (623)
Q Consensus 139 ~a~N~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~ 175 (623)
+|.-.|+-.++|+++.|.|+|-----.-++.+-++++
T Consensus 147 gAvR~g~l~~rG~~ilfadAdGaTkf~d~ekLe~al~ 183 (323)
T KOG2977 147 GAVRKGMLSSRGQKILFADADGATKFADLEKLEKALN 183 (323)
T ss_pred CCEEHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 0100546750674279970788744787999999877
No 105
>KOG2547 consensus
Probab=99.33 E-value=5.2e-11 Score=85.75 Aligned_cols=204 Identities=20% Similarity=0.249 Sum_probs=127.8
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCC--EEEEECCCCCCHHHHH
Q ss_conf 88816999953774556999998764207975157997148998168999999986308882--7997578887338898
Q gi|254780918|r 322 PPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNL--RVITDNTHPFNYSRIN 399 (623)
Q Consensus 322 ~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~--~~i~~~~~~~n~s~~~ 399 (623)
..|.||||.|..+-.+.+-.-++|... +.|+.+|++.+-+.++|| ..+..+++-+++|.+ +++.....-+--.++|
T Consensus 83 ~LPgVSiikPl~G~d~nl~~Nlesfft-s~Y~~~ElLfcv~s~eDp-Ai~vv~~Ll~kyp~VdAklf~gG~~vg~npKIn 160 (431)
T KOG2547 83 KLPGVSIIKPLKGVDPNLYHNLESFFT-SQYHKYELLFCVESSEDP-AIEVVERLLKKYPNVDAKLFFGGEKVGLNPKIN 160 (431)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH-HCCCCEEEEEEECCCCCC-HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHH
T ss_conf 999726873025678016776999885-226766899998068884-899999998638886458997562046584230
Q ss_pred HH--HHHHCCCCEEEEECCCCEEECHHHHHHHHHHHC-CCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCC
Q ss_conf 98--786148974744058827828168899887742-898169953766467675677870441325406786566432
Q gi|254780918|r 400 NN--ATLHAKGQYFCFLNNDTEVINGQWLSEMMGIAS-QPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKN 476 (623)
Q Consensus 400 N~--g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~-~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~ 476 (623)
|. |.+.|+-|+|+++|+|+.+ .||-+-.|+.... ++..|.|...-+..+ -+ |.-..+ ..
T Consensus 161 N~mpgy~~a~ydlvlisDsgI~m-~pdtildm~t~M~shekmalvtq~py~~d-----r~------Gf~atl------e~ 222 (431)
T KOG2547 161 NMMPGYRAAKYDLVLISDSGIFM-KPDTILDMATTMMSHEKMALVTQTPYCKD-----RQ------GFDATL------EQ 222 (431)
T ss_pred CCCHHHHHHCCCEEEEECCCEEE-CCCHHHHHHHHHHCCCCEEEECCCCEEEC-----CC------CCHHHH------HH
T ss_conf 11777797438889995588266-57609999986425002455417860440-----46------505514------22
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCC
Q ss_conf 25655557644222233444441110110204388889871799976876323168899999974981998475
Q gi|254780918|r 477 KHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPH 550 (623)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~ 550 (623)
..++ ...+...- ...+. .+.+.||--.|+||+++++.||+.. +..+--||.=+.-.+...||+.-+.-.
T Consensus 223 ~~fg--Tsh~r~yl-~~n~~-~~~c~tgms~~mrK~~ld~~ggi~~-f~~yLaedyFaaksllSRG~ksaist~ 291 (431)
T KOG2547 223 VYFG--TSHPRIYL-SGNVL-GFNCSTGMSSMMRKEALDECGGISA-FGGYLAEDYFAAKSLLSRGWKSAISTH 291 (431)
T ss_pred EEEC--CCCCEEEE-CCCCC-CCCCCCCHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 0322--57855997-56544-4405652788888999987045777-778899989988898762420001022
No 106
>KOG3588 consensus
Probab=99.21 E-value=2e-09 Score=75.99 Aligned_cols=223 Identities=14% Similarity=0.196 Sum_probs=138.8
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCC-CCCHH-HHHHHHHHHHCCCCCEEEEECCCCCCHHHH
Q ss_conf 8888169999537745569999987642079751579971489-98168-999999986308882799757888733889
Q gi|254780918|r 321 NPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNL-SDDSK-TFLYLQKIQKKYPNLRVITDNTHPFNYSRI 398 (623)
Q Consensus 321 ~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~-S~d~~-t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~ 398 (623)
-..|.|.+|+|-+.+.....+...++.... ..+++++||-=+ |.+.. -.+....+...++.+..+ ...+.|..+.+
T Consensus 226 i~~pgih~i~pl~gr~~~f~rf~q~~c~~~-d~~l~l~vv~f~~se~e~ak~e~~tslra~f~~~q~l-~lngeFSRa~a 303 (494)
T KOG3588 226 IEDPGIHMIMPLRGRAAIFARFAQSICARG-DDRLALSVVYFGYSEDEMAKRETITSLRASFIPVQFL-GLNGEFSRAKA 303 (494)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEE-CCCCHHHHHHH
T ss_conf 248973698752332777642068875057-9826999999547875777666777776238754894-04420115689
Q ss_pred HHHHHHHCCCCE-EEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCC--CCCC
Q ss_conf 898786148974-7440588278281688998877428981699537664676756778704413254067865--6643
Q gi|254780918|r 399 NNNATLHAKGQY-FCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNI--AGHK 475 (623)
Q Consensus 399 ~N~g~~~a~gey-ilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~--~~~~ 475 (623)
.-.|++.-+.+. +.|+|-|+ +++.++|++--.-+ +.|.+++|+-.-... |..| +.+-++. +.+.
T Consensus 304 L~vGAe~~~~nvLLFfcDVDi-~FT~efL~rcr~Nt------~~gkqiyfPivFS~y-np~i-----vy~~~~~~p~e~~ 370 (494)
T KOG3588 304 LMVGAETLNANVLLFFCDVDI-YFTTEFLNRCRLNT------ILGKQIYFPIVFSQY-NPEI-----VYEQDKPLPAEQQ 370 (494)
T ss_pred HHHHHHHHCCCEEEEEECCCE-EEHHHHHHHHHHCC------CCCCEEEEEEEEECC-CCCE-----EECCCCCCCHHHH
T ss_conf 886477752162699841200-14099998876436------778657898887404-7641-----5317999964674
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEE
Q ss_conf 22565555764422223344444111011020438888987179997687632316889999997498199847549995
Q gi|254780918|r 476 NKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYH 555 (623)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H 555 (623)
+.+.. ..|+ -+++.- .-+| +-|+.|-.|||||++--..+.|||||--+.-..|.+++=+|..-+.|
T Consensus 371 ~~~~~----~tGf-------wRdfGf-Gmtc--~yrsd~~~vgGFD~~I~GWG~EDV~Ly~K~v~~~l~viR~p~pGl~H 436 (494)
T KOG3588 371 LVIKK----DTGF-------WRDFGF-GMTC--QYRSDFLTVGGFDMEIKGWGGEDVDLYRKYVHSGLKVIRTPEPGLFH 436 (494)
T ss_pred EEECC----CCCC-------CCCCCC-CEEE--EEECCCEEECCCCEEEECCCCHHHHHHHHHHHCCCEEEECCCCCEEE
T ss_conf 24415----6552-------010577-6467--65035132257522542257403799999985384799669996688
Q ss_pred ECCCCCCCCCCCHHHHH
Q ss_conf 17733677668999999
Q gi|254780918|r 556 DESRTRKYDHEDPAKMI 572 (623)
Q Consensus 556 ~es~srg~~~~~~~k~~ 572 (623)
.-.--+-.+..+|++..
T Consensus 437 ~~H~~~C~~~l~p~Qy~ 453 (494)
T KOG3588 437 LWHPKRCDDNLTPEQYR 453 (494)
T ss_pred EECCCCCCCCCCHHHHH
T ss_conf 63354367789989999
No 107
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=99.18 E-value=3.3e-10 Score=80.83 Aligned_cols=113 Identities=21% Similarity=0.278 Sum_probs=85.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHCCCCCC-EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEC-------CCCCC
Q ss_conf 88169999537745569999987642079751-57997148998168999999986308882799757-------88873
Q gi|254780918|r 323 PPLVSIIIPTYNHHHLLKICLESIYHKTTYSS-FEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDN-------THPFN 394 (623)
Q Consensus 323 ~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~-~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~-------~~~~n 394 (623)
..+||||||++|..+.+...++++.... ++. -||||||++|+|. |.+..+.. +.+++... ..+ |
T Consensus 30 ~~~VSVvlPalNEe~TVg~vv~~i~~~~-~~lvDEviVvDsgStD~-Ta~~A~~a-----GA~V~~~~~ilp~~~~~~-G 101 (307)
T PRK13915 30 GRTVSVVLPALNEEATVGKVVDSIRPLL-VGLVDELIVIDSGSTDD-TAIRAAAA-----GARVVSREEILPEVPPRP-G 101 (307)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCCCC-HHHHHHHH-----CCEEEEHHHCCCCCCCCC-C
T ss_conf 9869999347765777999999998850-58875699977999765-89999981-----997982345064579989-9
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHH-CCCCEEEEEE
Q ss_conf 388989878614897474405882782816889988774-2898169953
Q gi|254780918|r 395 YSRINNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIA-SQPQVGAVGA 443 (623)
Q Consensus 395 ~s~~~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~-~~~~vG~Vg~ 443 (623)
-..+.=.++..++||+++|+|.|+.=++|+++..|+..+ .+|++..|-+
T Consensus 102 KGealW~~l~~~~gDivvfvDaDi~~~~p~~v~~Ll~Pll~~p~v~~vKg 151 (307)
T PRK13915 102 KGEALWRSLAATRGDIVVFVDADLINPHPMFVPGLVGPLLTDPGVHLVKA 151 (307)
T ss_pred CHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 71999999860677789997067676887899987401246997338877
No 108
>pfam02709 Galactosyl_T_2 Galactosyltransferase. This is a family of galactosyltransferases from a wide range of Metazoa with three related galactosyltransferases activitys; all three of which are possessed by one sequence in some cases. EC:2.4.1.90, N-acetyllactosamine synthase; EC:2.4.1.38, Beta-N-acetylglucosaminyl-glycopeptide beta-1,4- galactosyltransferase; and EC:2.4.1.22 Lactose synthase. Note that N-acetyllactosamine synthase is a component of Lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin EC:2.4.1.90 is the catalysed reaction.
Probab=99.05 E-value=4.8e-09 Score=73.71 Aligned_cols=164 Identities=25% Similarity=0.315 Sum_probs=102.9
Q ss_pred CCCCCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCC--CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCE
Q ss_conf 35775301213678888816999953774556999998764207--9751579971489981689999999863088827
Q gi|254780918|r 307 VFDGAQYRTHYMIPNPPPLVSIIIPTYNHHHLLKICLESIYHKT--TYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLR 384 (623)
Q Consensus 307 ~~~~~~~r~~~~~~~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t--~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~ 384 (623)
+..++.|+-.-. .+.-+|.||||-+|+.+.|...|..+.... .-.+|+|+||.-.
T Consensus 34 v~~GG~~~P~~C--~~~~kvAIIVPyRdR~~hL~~fl~~l~p~L~rQ~i~y~IfVieQ~--------------------- 90 (271)
T pfam02709 34 VLPGGRWRPKDC--QPRQKVAVIIPFRNREEHLRYLLYHLHPFLQRQRLDYGIYVINQT--------------------- 90 (271)
T ss_pred CCCCCEECCCCC--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEE---------------------
T ss_conf 478987789998--722337999735998999999999999999863897599999960---------------------
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC----CCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEE
Q ss_conf 99757888733889898786148----97474405882782816889988774289816995376646767567787044
Q gi|254780918|r 385 VITDNTHPFNYSRINNNATLHAK----GQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQ 460 (623)
Q Consensus 385 ~i~~~~~~~n~s~~~N~g~~~a~----geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iq 460 (623)
+..+||.++..|.|...|. -|+++|-|-|..+.+.. .+-.+-..| .
T Consensus 91 ----~~~~FNRg~L~NvGf~ea~k~~~~dc~iFHDVDllP~~d~---~~Y~c~~~P-----------------------~ 140 (271)
T pfam02709 91 ----GNDTFNRAKLLNVGFLEALKLGVWDCFVFHDVDLLPENDR---NPYKCPPQP-----------------------R 140 (271)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC---CCCCCCCCC-----------------------C
T ss_conf ----8964008889989999986327967899943664325667---644699986-----------------------1
Q ss_pred ECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHH
Q ss_conf 13254067865664322565555764422223344444111011020438888987179997687632316889999997
Q gi|254780918|r 461 HGGVIMGINNIAGHKNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILE 540 (623)
Q Consensus 461 haG~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~ 540 (623)
|-++.+ + .+ ........+ -|..+++.++.|++|+||.-.|...++||-||..|++.
T Consensus 141 Hl~~~~--~-----~~---~~~l~Y~~~--------------fGGV~~~t~~~f~~vNGfsN~yWGWGgEDDDl~~Ri~~ 196 (271)
T pfam02709 141 HLAVAM--D-----KY---GYRLPYKEY--------------FGGVSALTKEQFRKINGFPNNYWGWGGEDDDLYNRIIL 196 (271)
T ss_pred EEEEEC--C-----CC---CCCCCCCCE--------------EEEEEEECHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 768963--4-----34---765787888--------------78899856999977189775648888640789999998
Q ss_pred CCCEEEE
Q ss_conf 4981998
Q gi|254780918|r 541 AGYRNVW 547 (623)
Q Consensus 541 ~G~r~v~ 547 (623)
+|+.+.=
T Consensus 197 ~gl~i~R 203 (271)
T pfam02709 197 AGMKISR 203 (271)
T ss_pred CCCEEEC
T ss_conf 5980784
No 109
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=98.98 E-value=1.8e-08 Score=70.19 Aligned_cols=166 Identities=19% Similarity=0.240 Sum_probs=113.4
Q ss_pred CEEEEECCCCCCHH----HHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHH----HHHHHHHH---HCCCEEEEECCCCC
Q ss_conf 78999747589888----99999999982889-974899987757806799----99999887---57988999808888
Q gi|254780918|r 68 LISVIMPVYKIKKE----WLEMAIESVRSQIY-SHWELCIAEDCSGDIETV----SLLKKYAN---MDSRIKVVFRAKNG 135 (623)
Q Consensus 68 ~iSIiip~yn~~~~----~L~~~i~Si~~Qty-~~~EliivdD~S~d~~~~----~~l~~~~~---~d~ri~~~~~~~n~ 135 (623)
+.-|+||+||.+.. -|+.+.+|+.+.-. .+|++.|.-| |+|++.. ....++.. ...||-|-++.+|.
T Consensus 124 rtAilmPiyNEd~~~vfa~l~Am~~sl~~tg~~~~Fd~fILSD-T~dp~i~~~Ee~a~~~L~~~~~~~~ri~YRRR~~N~ 202 (663)
T PRK05454 124 RTAILMPIYNEDPARVFAGLRAMYESLAATGHLAHFDFFILSD-TTDPDIAAAEEAAWLELRAELGGEGRIFYRRRRRNV 202 (663)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC-CCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 7699951778999999999999999999718866603899748-997668999999999999865887860553155355
Q ss_pred CH-HHHHHHHHHHC--CCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCC----------CEEEECCC
Q ss_conf 56-48999999965--9989999769875273207999999873247554202220675898----------36542256
Q gi|254780918|r 136 HI-SAASNSAAQLA--TSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQ----------IRSGPYFK 202 (623)
Q Consensus 136 g~-~~a~N~~l~~a--~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g----------~~~~p~fk 202 (623)
|- ++|.-.=++.- .-||.+.||+|-+.+.+++.+++..++.+|+++++-|--..+..+. ...+|.|-
T Consensus 203 ~rKaGNIaDf~rrwG~~Y~~MiVLDADSlMsG~ti~~lv~~Me~~P~~GliQT~P~~v~~~TlFaR~qQFa~r~ygp~~~ 282 (663)
T PRK05454 203 KRKAGNIADFCRRWGGRYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQTLPKAVGGDTLFARLQQFATRVYGPLFA 282 (663)
T ss_pred CCCCCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCHHHH
T ss_conf 77775699999860887752666234134674999999999864998645115670557767999999999985089999
Q ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 67896674147854314576899999718878
Q gi|254780918|r 203 YDFNPELFHVHNMITHLGVYRTETFKKIGGFR 234 (623)
Q Consensus 203 p~~~~~~l~s~nyi~~~~~~rr~~~~~iGgf~ 234 (623)
-...--.....||-||..++|...|.+.=|..
T Consensus 283 ~Gla~Wqg~eg~yWGHNAIIR~~aF~~~cgLP 314 (663)
T PRK05454 283 AGLAFWQGGEGNYWGHNAIIRVKAFAEHCGLP 314 (663)
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99999837889851168999769999866999
No 110
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=98.97 E-value=7.3e-08 Score=66.45 Aligned_cols=179 Identities=16% Similarity=0.208 Sum_probs=115.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCC--CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCC----C--------
Q ss_conf 89997475898889999999998288--997489998775780679999999887579889998088----8--------
Q gi|254780918|r 69 ISVIMPVYKIKKEWLEMAIESVRSQI--YSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAK----N-------- 134 (623)
Q Consensus 69 iSIiip~yn~~~~~L~~~i~Si~~Qt--y~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~----n-------- 134 (623)
|-|+|-++|. ..+|++||+||+++. ...+-|+|--||..+ ++.++++.|.. .|+++.++. |
T Consensus 2 ipVlV~a~NR-p~~l~r~L~sLl~~~p~~~~~pIiVsqDg~~~-~~~~v~~~yg~---~i~~i~~~~~~~~~~~~~~k~~ 76 (334)
T cd02514 2 IPVLVIACNR-PDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE-EVADVAKSFGD---GVTHIQHPPISIKNVNPPHKFQ 76 (334)
T ss_pred CCEEEEECCC-HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCH-HHHHHHHHHCC---EEEEEECCCCCCCCCCCHHHHH
T ss_conf 1189995587-79999999999851866787448999479987-99999997251---0278967886655667525556
Q ss_pred --CCHH----HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHH---HHHCCCCCCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf --8564----89999999659989999769875273207999999---87324755420222067589836542256678
Q gi|254780918|r 135 --GHIS----AASNSAAQLATSEWLALLDHDDLLHPTALYYVADA---INNNPNAEIIYSDEDKINENQIRSGPYFKYDF 205 (623)
Q Consensus 135 --~g~~----~a~N~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~---l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~~ 205 (623)
..++ .|+|..+..-.-+.++++..|=.++|+.|+-+... +.+++.+=+|- .-+.+|..... +-
T Consensus 77 ~Y~~Ia~HYk~aL~~~F~~~~~~~vIIlEDDL~vspDFf~YF~~t~~LL~~D~sl~cIS----AWNDnG~~~~v----~~ 148 (334)
T cd02514 77 GYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCIS----AWNDNGKEHFV----DD 148 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE----EECCCCCCCCC----CC
T ss_conf 68999999999999986305887699994563335759999997568761599668997----33167865557----87
Q ss_pred CHHHHCCCC-CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCE
Q ss_conf 966741478-543145768999997188789877302741367886424875220068422
Q gi|254780918|r 206 NPELFHVHN-MITHLGVYRTETFKKIGGFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVL 265 (623)
Q Consensus 206 ~~~~l~s~n-yi~~~~~~rr~~~~~iGgf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vL 265 (623)
++++|.... +.|=-.|.+|++++++ .+..+ .++||.|+|.-+.-.... +-.|++=
T Consensus 149 ~~~~lyRsdffpGLGWml~r~lw~El---~pkWP-~~~WDdWmR~p~~RkgR~-cIrPEis 204 (334)
T cd02514 149 TPSLLYRTDFFPGLGWMLTRKLWKEL---EPKWP-KAFWDDWMRLPEQRKGRE-CIRPEIS 204 (334)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHH---CCCCC-CCCHHHHHCCHHHHCCCC-CCCCCCC
T ss_conf 61102430467735665108789762---55799-874176650556517974-1256665
No 111
>KOG2547 consensus
Probab=98.94 E-value=3.9e-08 Score=68.13 Aligned_cols=178 Identities=18% Similarity=0.312 Sum_probs=116.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCE--EEEECCCCCCHHHHH
Q ss_conf 458978999747589888999999999828899748999877578067999999988757988--999808888564899
Q gi|254780918|r 64 QNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRI--KVVFRAKNGHISAAS 141 (623)
Q Consensus 64 ~~~P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri--~~~~~~~n~g~~~a~ 141 (623)
+.-|.||||+|.-..+ +.|..-++|--.-.|+.+|+..+-+.+.|+ ..++++++-.+.|.+ +++..-+..|+..-.
T Consensus 82 ~~LPgVSiikPl~G~d-~nl~~Nlesffts~Y~~~ElLfcv~s~eDp-Ai~vv~~Ll~kyp~VdAklf~gG~~vg~npKI 159 (431)
T KOG2547 82 PKLPGVSIIKPLKGVD-PNLYHNLESFFTSQYHKYELLFCVESSEDP-AIEVVERLLKKYPNVDAKLFFGGEKVGLNPKI 159 (431)
T ss_pred CCCCCCEEEEECCCCC-CHHHHHHHHHHHHCCCCEEEEEEECCCCCC-HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH
T ss_conf 8999726873025678-016776999885226766899998068884-89999999863888645899756204658423
Q ss_pred ---HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCE---EEECCCCCCCHHHHCCCCC
Q ss_conf ---9999965998999976987527320799999987324755420222067589836---5422566789667414785
Q gi|254780918|r 142 ---NSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIR---SGPYFKYDFNPELFHVHNM 215 (623)
Q Consensus 142 ---N~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~---~~p~fkp~~~~~~l~s~ny 215 (623)
.-|.+.|+-++|.++|+|-.+.|+.+.-++..+..+...+++-.---..+.+|-. ...+|-.. -+...++.|.
T Consensus 160 nN~mpgy~~a~ydlvlisDsgI~m~pdtildm~t~M~shekmalvtq~py~~dr~Gf~atle~~~fgTs-h~r~yl~~n~ 238 (431)
T KOG2547 160 NNMMPGYRAAKYDLVLISDSGIFMKPDTILDMATTMMSHEKMALVTQTPYCKDRQGFDATLEQVYFGTS-HPRIYLSGNV 238 (431)
T ss_pred HCCCHHHHHHCCCEEEEECCCEEECCCHHHHHHHHHHCCCCEEEECCCCEEECCCCCHHHHHHEEECCC-CCEEEECCCC
T ss_conf 011777797438889995588266576099999864250024554178604404650551422032257-8559975654
Q ss_pred -----CC-HHHHHHHHHHHHHCCCCCCCCC--CCCCHH
Q ss_conf -----43-1457689999971887898773--027413
Q gi|254780918|r 216 -----IT-HLGVYRTETFKKIGGFREKFEG--AQDYDL 245 (623)
Q Consensus 216 -----i~-~~~~~rr~~~~~iGgf~~~~~~--~~D~Dl 245 (623)
.+ -..+.||+.+++.||+. .|.+ ++||=+
T Consensus 239 ~~~~c~tgms~~mrK~~ld~~ggi~-~f~~yLaedyFa 275 (431)
T KOG2547 239 LGFNCSTGMSSMMRKEALDECGGIS-AFGGYLAEDYFA 275 (431)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHH
T ss_conf 4440565278888899998704577-777889998998
No 112
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=98.91 E-value=2.4e-08 Score=69.36 Aligned_cols=150 Identities=23% Similarity=0.267 Sum_probs=97.2
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHCC--CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 16999953774556999998764207--9751579971489981689999999863088827997578887338898987
Q gi|254780918|r 325 LVSIIIPTYNHHHLLKICLESIYHKT--TYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNA 402 (623)
Q Consensus 325 ~VSIIIp~~n~~~~l~~cl~Sl~~~t--~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g 402 (623)
+|+||||-+|+.+.|...+..+.... .-.+++|+||.-. +..+||.+++.|.|
T Consensus 3 k~aIIIPyRdR~~hL~~fl~~l~~~L~~q~~~y~I~vieQ~-------------------------~~~~FNRg~L~NiG 57 (219)
T cd00899 3 KVAIIVPFRNRFEHLLIFLPHLHPFLQRQQLDYRIFVIEQV-------------------------GNFRFNRAKLLNVG 57 (219)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC-------------------------CCCCCCHHHHHHHH
T ss_conf 59999954997999999999999999865887699999964-------------------------88550066667299
Q ss_pred HHHCC----CCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCC
Q ss_conf 86148----97474405882782816889988774289816995376646767567787044132540678656643225
Q gi|254780918|r 403 TLHAK----GQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKH 478 (623)
Q Consensus 403 ~~~a~----geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~ 478 (623)
...|. -++++|-|-|..+.++.- .|. .+++ -.|-... ... +
T Consensus 58 f~ea~~~~~~d~~ifHDVDllP~~~~~--------------------~Y~-----~~~~-p~Hl~~~--~~~-----~-- 102 (219)
T cd00899 58 FLEALKDGDWDCFIFHDVDLLPENDRN--------------------LYG-----CEEG-PRHLSVP--LDK-----F-- 102 (219)
T ss_pred HHHHHHCCCCCEEEEECCCCCCCCCCC--------------------CCC-----CCCC-CEEEEEE--ECE-----E--
T ss_conf 999974369888999326634466676--------------------325-----8997-5271323--110-----3--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECC
Q ss_conf 65555764422223344444111011020438888987179997687632316889999997498199847
Q gi|254780918|r 479 HKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTP 549 (623)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P 549 (623)
......+.+ -|..+++.++.|++|+||.-.|...++||-||..|+..+|..+.--|
T Consensus 103 -~~~l~y~~~--------------fGGV~~~~~~~f~~vNGfsN~yWGWGgEDDdl~~R~~~~~l~i~R~~ 158 (219)
T cd00899 103 -HYKLPYKTY--------------FGGVLALTREQFRKVNGFSNAYWGWGGEDDDLYNRIKAAGLKITRPS 158 (219)
T ss_pred -CCCCCCCCE--------------EEEEEEECHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECC
T ss_conf -441278762--------------30499977999987289983346888552699999987797598079
No 113
>KOG3916 consensus
Probab=98.87 E-value=2.2e-08 Score=69.65 Aligned_cols=184 Identities=24% Similarity=0.361 Sum_probs=104.6
Q ss_pred CCCCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHH---HHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCE
Q ss_conf 577530121367888881699995377455699999876---42079751579971489981689999999863088827
Q gi|254780918|r 308 FDGAQYRTHYMIPNPPPLVSIIIPTYNHHHLLKICLESI---YHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLR 384 (623)
Q Consensus 308 ~~~~~~r~~~~~~~~~P~VSIIIp~~n~~~~l~~cl~Sl---~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~ 384 (623)
..++.|+-.-. .+.-+|.||||.+|+.+.|...|.-| +++. --+|.|+||...
T Consensus 137 ~pGG~~~P~dC--~ar~kvAIIIPfR~Re~HL~~~l~~LhP~LqrQ-rL~y~iyVieQ~--------------------- 192 (372)
T KOG3916 137 RPGGRYRPEDC--QARHKVAIIIPFRNREEHLRYLLHHLHPFLQRQ-RLDYRIYVIEQA--------------------- 192 (372)
T ss_pred CCCCCCCCCCC--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH-HHCEEEEEEEEC---------------------
T ss_conf 88887599778--755326999313537889999999862888864-012169999813---------------------
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCE----EEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEE
Q ss_conf 99757888733889898786148974----74405882782816889988774289816995376646767567787044
Q gi|254780918|r 385 VITDNTHPFNYSRINNNATLHAKGQY----FCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQ 460 (623)
Q Consensus 385 ~i~~~~~~~n~s~~~N~g~~~a~gey----ilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iq 460 (623)
...+||-|++.|.|...|--|| ++|-|=|..+.+ | ..+..+-.+|.
T Consensus 193 ----g~~~FNRakL~NVGf~eAlkd~~wdCfIFHDVDllPen-D--rNlY~C~~~PR----------------------- 242 (372)
T KOG3916 193 ----GNKPFNRAKLLNVGFLEALKDYGWDCFIFHDVDLLPEN-D--RNLYGCPEQPR----------------------- 242 (372)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-C--CCCCCCCCCCC-----------------------
T ss_conf ----89762087765268999987439877998236646567-8--88367999772-----------------------
Q ss_pred ECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHH
Q ss_conf 13254067865664322565555764422223344444111011020438888987179997687632316889999997
Q gi|254780918|r 461 HGGVIMGINNIAGHKNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILE 540 (623)
Q Consensus 461 haG~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~ 540 (623)
|-++.+. .++......++++ .|| ++.++-|.+|.||...|+..++||-|+..|+..
T Consensus 243 H~sva~d----------k~gy~LPY~~~FG----------GVs----alt~~qf~kINGFsN~fWGWGGEDDDl~nRv~~ 298 (372)
T KOG3916 243 HMSVALD----------KFGYRLPYKEYFG----------GVS----ALTKEQFRKINGFSNAFWGWGGEDDDLWNRVQL 298 (372)
T ss_pred CHHHHHH----------HCCCCCCCHHHHC----------CHH----HCCHHHHHHHCCCCCHHCCCCCCCHHHHHHHHH
T ss_conf 0654342----------0254035226407----------631----356999987659970002658750279999986
Q ss_pred CCCEEE-ECC----CEEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 498199-847----549995177336776689999999
Q gi|254780918|r 541 AGYRNV-WTP----HADLYHDESRTRKYDHEDPAKMIV 573 (623)
Q Consensus 541 ~G~r~v-~~P----~a~v~H~es~srg~~~~~~~k~~~ 573 (623)
+|+.+- +.+ +..+.|+ - +| ++..+.+...
T Consensus 299 ag~~IsRp~~~igrYkMikH~-~--k~-n~~n~~Ry~l 332 (372)
T KOG3916 299 AGMKISRPPPEIGRYKMIKHH-D--KG-NEPNPGRYKL 332 (372)
T ss_pred CCCEEECCCCCCCEEEEEECC-C--CC-CCCCHHHHHH
T ss_conf 486215588764305775310-0--35-7788689999
No 114
>KOG2977 consensus
Probab=98.81 E-value=3.5e-08 Score=68.40 Aligned_cols=92 Identities=26% Similarity=0.388 Sum_probs=65.7
Q ss_pred CEEEEEECCCCH----HHHHHHHHHHHHCCCC---CCEEEEEECCCCCCHHHHHHHHHHHHC--CCCCEEEEECCCCCCH
Q ss_conf 169999537745----5699999876420797---515799714899816899999998630--8882799757888733
Q gi|254780918|r 325 LVSIIIPTYNHH----HLLKICLESIYHKTTY---SSFEVIIIDNLSDDSKTFLYLQKIQKK--YPNLRVITDNTHPFNY 395 (623)
Q Consensus 325 ~VSIIIp~~n~~----~~l~~cl~Sl~~~t~y---~~~EiivVdn~S~d~~t~~~l~~~~~~--~~~~~~i~~~~~~~n~ 395 (623)
-.|||||.||+. ..+..|++++.++..- -++||+|||+||+|. |.++.-++..+ ...++++....+.+.-
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~le~ry~~~~~F~~eiiVvddgs~d~-T~~~a~k~s~K~~~d~irV~~l~~nrgKG 146 (323)
T KOG2977 68 YLSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDS-TVEVALKFSRKLGDDNIRVIKLKKNRGKG 146 (323)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHH-HHHHHHHHHHHCCCCEEEEEEHHCCCCCC
T ss_conf 15899845786441577999999999887425877751489947997306-99999999987186619985211147887
Q ss_pred HHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 88989878614897474405882
Q gi|254780918|r 396 SRINNNATLHAKGQYFCFLNNDT 418 (623)
Q Consensus 396 s~~~N~g~~~a~geyilfLn~D~ 418 (623)
++ .-.|+-+++|++++|.|+|=
T Consensus 147 gA-vR~g~l~~rG~~ilfadAdG 168 (323)
T KOG2977 147 GA-VRKGMLSSRGQKILFADADG 168 (323)
T ss_pred CC-EEHHHHHCCCCEEEEECCCC
T ss_conf 01-00546750674279970788
No 115
>pfam03071 GNT-I GNT-I family. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) EC:2.4.1.101 transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C-terminus.
Probab=98.81 E-value=6.9e-07 Score=60.49 Aligned_cols=185 Identities=14% Similarity=0.147 Sum_probs=119.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC--CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCC------
Q ss_conf 45897899974758988899999999982889--9748999877578067999999988757988999808888------
Q gi|254780918|r 64 QNKPLISVIMPVYKIKKEWLEMAIESVRSQIY--SHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNG------ 135 (623)
Q Consensus 64 ~~~P~iSIiip~yn~~~~~L~~~i~Si~~Qty--~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~------ 135 (623)
+.+|.|-|+|-++|. ..++++||+||+..-. ..+-|||--||+.. +|.+.+++|.+. |.++.+++..
T Consensus 90 ~~~pVipVlV~ACnR-~~~v~r~ld~llkyRPS~e~fPIiVSQDc~~~-~t~~vi~syg~~---v~~i~q~d~~~i~v~p 164 (434)
T pfam03071 90 PWPPVIPVLVFACNR-ADYVRRHVEKLLHYRPSAEKFPIIVSQDCDHE-EVKKEVLSYGNQ---VTYIKHLDFEPIAIPP 164 (434)
T ss_pred CCCCCEEEEEEECCC-HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCH-HHHHHHHHHHHC---EEEEECCCCCCCCCCC
T ss_conf 888725899997487-48999999999713885112997995069988-999999965300---2787158878887897
Q ss_pred ------C-------HHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH---HHHHCCCCCCCCCCCEEECCCCCEEEE
Q ss_conf ------5-------648999999965998999976987527320799999---987324755420222067589836542
Q gi|254780918|r 136 ------H-------ISAASNSAAQLATSEWLALLDHDDLLHPTALYYVAD---AINNNPNAEIIYSDEDKINENQIRSGP 199 (623)
Q Consensus 136 ------g-------~~~a~N~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~---~l~~~p~~~~iYsDe~~i~~~g~~~~p 199 (623)
| .--|+|..+..-.-+-|+++..|-.+.||.+.-... .+.+++.+=||- ..+.+|....
T Consensus 165 ~~kk~~gYykIarHYkwAL~~vF~~~~~~~vIIvEdDL~vapDFf~yF~~t~~lL~~D~sl~cvS----AWNDnG~~~~- 239 (434)
T pfam03071 165 GHRKFTAYYKIARHYKWALNQVFYKHNFSSVIITEDDLEIAPDFFSYFSATRYLLERDPSLWCVS----AWNDNGKEQN- 239 (434)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEE----ECCCCCCCCC-
T ss_conf 52301448999988888998787663887599982464436357999997379871599730675----2045786445-
Q ss_pred CCCCCCCHHHHCCC-CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCE
Q ss_conf 25667896674147-8543145768999997188789877302741367886424875220068422
Q gi|254780918|r 200 YFKYDFNPELFHVH-NMITHLGVYRTETFKKIGGFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVL 265 (623)
Q Consensus 200 ~fkp~~~~~~l~s~-nyi~~~~~~rr~~~~~iGgf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vL 265 (623)
-.+-++++|... .+.|--.|..|++++++. +..+. ..||-|+|.-+.-.. +-+-.|++-
T Consensus 240 --v~~~~~~~LyRsdffPGLGWml~r~lW~EL~---pkWP~-~~WDdWmR~p~~rkg-R~cIrPEvs 299 (434)
T pfam03071 240 --VDDSRPYTLYRSDFFPGLGWMLSRKTWDELE---PKWPK-AFWDDWMRLPEQRKG-RQCIRPEIS 299 (434)
T ss_pred --CCCCCCCCEEECCCCCCHHHHHHHHHHHHHC---CCCCC-CCHHHHHCCHHHCCC-CCCCCCCCC
T ss_conf --6778866146226777357761388897635---57987-652755302343078-742456653
No 116
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=98.76 E-value=9.1e-07 Score=59.75 Aligned_cols=189 Identities=15% Similarity=0.193 Sum_probs=117.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCH--HHHHHHH
Q ss_conf 78999747589888999999999828-89974899987757806799999998875798899980888856--4899999
Q gi|254780918|r 68 LISVIMPVYKIKKEWLEMAIESVRSQ-IYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHI--SAASNSA 144 (623)
Q Consensus 68 ~iSIiip~yn~~~~~L~~~i~Si~~Q-ty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~--~~a~N~~ 144 (623)
.+-|.||.++ +...|.++++..++. .|+|+.|.+-- =.+|++|..-+++....+||++.+..+.+|-. +..+|.-
T Consensus 68 ~lAimvPAW~-E~~VI~~M~e~~~~~~~y~~y~iFvG~-YpND~~T~~~v~~~~~~~p~v~~vv~~~~GPTsKadcLN~i 145 (646)
T PRK11234 68 PLAIMVPAWN-EYGVIANMAELAASTLDYENYHIFVGT-YPNDPDTQREVDRVCRRYPNVHKVVCARPGPTSKADCLNNV 145 (646)
T ss_pred CEEEEECCCC-HHHHHHHHHHHHHHHCCCCCEEEEEEE-CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHH
T ss_conf 3589932443-243599999988872677754899973-79987899999999852898699961898998589999999
Q ss_pred HHH------CCC---CEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCC----CCCCEEEC--CCCCE----EEECCCCCC
Q ss_conf 996------599---899997698752732079999998732475542----02220675--89836----542256678
Q gi|254780918|r 145 AQL------ATS---EWLALLDHDDLLHPTALYYVADAINNNPNAEII----YSDEDKIN--ENQIR----SGPYFKYDF 205 (623)
Q Consensus 145 l~~------a~G---e~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~i----YsDe~~i~--~~g~~----~~p~fkp~~ 205 (623)
++. ..| .-|++.|+.|+++|..|......+.. .|+| |+=+.... ..|.. .+-|.|.=-
T Consensus 146 ~~ai~~~E~~~~~~fag~vlHDaEDvihP~el~l~n~l~~~---~d~iQlPV~~l~~~~~~~vag~Y~DEFAE~H~Kd~v 222 (646)
T PRK11234 146 IDAIFQFEASAGIEFAGFILHDAEDVIHPLELRLFNYLLPR---KDLIQLPVYPLEREWYEFVAGTYMDEFAEWHGKDLV 222 (646)
T ss_pred HHHHHHHHHCCCCCEEEEEEECHHHCCCHHHHHHHHHHCCC---CCEEECCCCCCCCHHHHHHCHHHHHHHHHHHCCCCC
T ss_conf 99999988504972216888445634599899999864573---556535611265113022011105778887445446
Q ss_pred CHHHH-CCCCCCCHHHHHHHHHHHHH-----C-CCCCCCCCCCCCHHHHHHHHCCCCCCEEECC
Q ss_conf 96674-14785431457689999971-----8-8789877302741367886424875220068
Q gi|254780918|r 206 NPELF-HVHNMITHLGVYRTETFKKI-----G-GFREKFEGAQDYDLVLRFLENIDLSQIIHIP 262 (623)
Q Consensus 206 ~~~~l-~s~nyi~~~~~~rr~~~~~i-----G-gf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip 262 (623)
-.+.+ ...|-.|-.++|+|.+++.+ | -|+++- -.+|||+.+|+.+.+....++..|
T Consensus 223 VRe~l~g~VPSAGVGt~fsRral~~l~~~~~g~pF~~~S-LTEDYd~g~rl~~~G~r~~Fv~~p 285 (646)
T PRK11234 223 VREALTGQVPSAGVGTCFSRRAITALLADGDGIPFDVQS-LTEDYDIGFRLKEKGMTEIFVRFP 285 (646)
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHHHHHHCCCCCEEEECC
T ss_conf 887735868887403264499999999855999777775-411589899999758860799743
No 117
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=98.66 E-value=2.4e-06 Score=57.12 Aligned_cols=201 Identities=18% Similarity=0.343 Sum_probs=116.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE-CCCCCCHHHHHHHHH
Q ss_conf 1699995377455699999876420797515799714899816899999998630888279975-788873388989878
Q gi|254780918|r 325 LVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITD-NTHPFNYSRINNNAT 403 (623)
Q Consensus 325 ~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~-~~~~~n~s~~~N~g~ 403 (623)
.+.|.||+++..+.+.+-++.-....+|+||.|.| ----+|++|..-.+++..++|+++.+.. .++|-+-|.-.|.-+
T Consensus 68 ~lAimvPAW~E~~VI~~M~e~~~~~~~y~~y~iFv-G~YpND~~T~~~v~~~~~~~p~v~~vv~~~~GPTsKadcLN~i~ 146 (646)
T PRK11234 68 PLAIMVPAWNEYGVIANMAELAASTLDYENYHIFV-GTYPNDPDTQREVDRVCRRYPNVHKVVCARPGPTSKADCLNNVI 146 (646)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEE-EECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 35899324432435999999888726777548999-73799878999999998528986999618989985899999999
Q ss_pred HH------CCC-CE--EEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCC
Q ss_conf 61------489-74--7440588278281688998877428981699537664676756778704413254067865664
Q gi|254780918|r 404 LH------AKG-QY--FCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGH 474 (623)
Q Consensus 404 ~~------a~g-ey--ilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~ 474 (623)
+. ..| +| +++-|+. .|+.|--| +|.+++.. +-.+|.=-+ ++-.. +-.. .-||.. ++.++.+
T Consensus 147 ~ai~~~E~~~~~~fag~vlHDaE-DvihP~el-~l~n~l~~-~~d~iQlPV-~~l~~---~~~~-~vag~Y--~DEFAE~ 216 (646)
T PRK11234 147 DAIFQFEASAGIEFAGFILHDAE-DVIHPLEL-RLFNYLLP-RKDLIQLPV-YPLER---EWYE-FVAGTY--MDEFAEW 216 (646)
T ss_pred HHHHHHHHCCCCCEEEEEEECHH-HCCCHHHH-HHHHHHCC-CCCEEECCC-CCCCC---HHHH-HHCHHH--HHHHHHH
T ss_conf 99999885049722168884456-34599899-99986457-355653561-12651---1302-201110--5778887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHH-----C-CCCHHHHHHHCCHHHHHHHHHHCCCEEEEC
Q ss_conf 3225655557644222233444441110110204388889871-----7-999768763231688999999749819984
Q gi|254780918|r 475 KNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHV-----G-GFDEKNTPVVFSDIDLCLRILEAGYRNVWT 548 (623)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~i-----G-GfDE~~~~~~~eDvDlclR~~~~G~r~v~~ 548 (623)
..+....+... ...--||=.|.| ++|++++.+ | .||+..++ ||.|+++|+++.|.|.++.
T Consensus 217 H~Kd~vVRe~l---------~g~VPSAGVGt~--fsRral~~l~~~~~g~pF~~~SLT---EDYd~g~rl~~~G~r~~Fv 282 (646)
T PRK11234 217 HGKDLVVREAL---------TGQVPSAGVGTC--FSRRAITALLADGDGIPFDVQSLT---EDYDIGFRLKEKGMTEIFV 282 (646)
T ss_pred HCCCCCHHHHH---------CCCCCCCCCHHH--HHHHHHHHHHHHCCCCCCCCCCCC---HHHHHHHHHHHCCCCCEEE
T ss_conf 44544688773---------586888740326--449999999985599977777541---1589899999758860799
Q ss_pred CC
Q ss_conf 75
Q gi|254780918|r 549 PH 550 (623)
Q Consensus 549 P~ 550 (623)
-+
T Consensus 283 ~~ 284 (646)
T PRK11234 283 RF 284 (646)
T ss_pred EC
T ss_conf 74
No 118
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=98.65 E-value=1.7e-07 Score=64.17 Aligned_cols=182 Identities=14% Similarity=0.147 Sum_probs=96.3
Q ss_pred CCEEEEECCCCCCHH-HHH-HHHH--HHH--HCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCH---
Q ss_conf 978999747589888-999-9999--998--2889974899987757806799999998875798899980888856---
Q gi|254780918|r 67 PLISVIMPVYKIKKE-WLE-MAIE--SVR--SQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHI--- 137 (623)
Q Consensus 67 P~iSIiip~yn~~~~-~L~-~~i~--Si~--~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~--- 137 (623)
|++++|||+-.+.+. +.. +.+. |++ -|+-.+.++|+++..+. ....+..+....+|+.++.-....-+
T Consensus 2 ~~~~~iiPv~~S~e~p~~~~R~f~~~~~~k~fts~~~~~vi~~~~~~~---~d~~i~~~i~~~~~~~yl~~~s~~~F~s~ 78 (346)
T COG4092 2 QPNGEIIPVAESEELPLTDSRQFSRTSAVKVFTSSDITMVICLRAHEV---MDRLIRSYIDPMPRVLYLDFGSPEPFASE 78 (346)
T ss_pred CCCCEEEECCHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCH
T ss_conf 976258523111015306889876676665306566679999706156---78999998554651478834887645551
Q ss_pred HHHHHHHHHHC----CCCEEEEECCCCCCCCCHHHHHHHHH-----HHCCCCCCCCCCCEEEC-CCCCEEEECCCCCCCH
Q ss_conf 48999999965----99899997698752732079999998-----73247554202220675-8983654225667896
Q gi|254780918|r 138 SAASNSAAQLA----TSEWLALLDHDDLLHPTALYYVADAI-----NNNPNAEIIYSDEDKIN-ENQIRSGPYFKYDFNP 207 (623)
Q Consensus 138 ~~a~N~~l~~a----~Ge~i~~lD~DD~l~p~~L~~~~~~l-----~~~p~~~~iYsDe~~i~-~~g~~~~p~fkp~~~~ 207 (623)
+...|.|+..+ ...+|.|||.|+.++.+-++.+++.+ .++-++-.+|.- ..++ +.+...--.+---|+.
T Consensus 79 ~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~~ikk~~tnI~a~~vlPV-~~LNk~~~~v~f~~~d~f~d~ 157 (346)
T COG4092 79 TICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIATIKKMRTNIDAPLVLPV-YHLNKADTQVFFDVEDMFLDA 157 (346)
T ss_pred HHHHHCCCHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE-EECCHHHHHHHHHHHHHHHHH
T ss_conf 4665333123310246667999834100337789999989989888740575506541-101534304778888776456
Q ss_pred H-------------HHCCCCCCCHHHHHHHHHHHHHCCCCCCCC--CCCCCHHHHHHHHCC
Q ss_conf 6-------------741478543145768999997188789877--302741367886424
Q gi|254780918|r 208 E-------------LFHVHNMITHLGVYRTETFKKIGGFREKFE--GAQDYDLVLRFLENI 253 (623)
Q Consensus 208 ~-------------~l~s~nyi~~~~~~rr~~~~~iGgf~~~~~--~~~D~Dl~lR~~~~~ 253 (623)
- -+...+|. ...++.|..|...||+||.|. |++|.||+-|+....
T Consensus 158 ~i~es~~~~~~~~~~ff~~~~T-~~~liN~~~F~~tgGydE~F~GhG~EDfe~~~R~~l~~ 217 (346)
T COG4092 158 MIFESPLAEFRKEDNFFIAPYT-NIFLINRRMFSLTGGYDERFRGHGSEDFEFLTRLGLYI 217 (346)
T ss_pred HHHHHHHHHHCCCCCCCCCCCC-CEEEEEHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 7665178773854320136644-23897166777734886012457702699999999997
No 119
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.62 E-value=5.5e-07 Score=61.08 Aligned_cols=166 Identities=17% Similarity=0.247 Sum_probs=107.6
Q ss_pred CEEEEECCCCCCHH----HHHHHHHHHHHCC-CCCEEEEEECCCCCHHHH-----HHHHHHHHHH--CCCEEEEECCCCC
Q ss_conf 78999747589888----9999999998288-997489998775780679-----9999998875--7988999808888
Q gi|254780918|r 68 LISVIMPVYKIKKE----WLEMAIESVRSQI-YSHWELCIAEDCSGDIET-----VSLLKKYANM--DSRIKVVFRAKNG 135 (623)
Q Consensus 68 ~iSIiip~yn~~~~----~L~~~i~Si~~Qt-y~~~EliivdD~S~d~~~-----~~~l~~~~~~--d~ri~~~~~~~n~ 135 (623)
.-.|+||+||.+.. -|+.+-+|+.+-- -.+|.+.|.-| |.|+++ +.+.+-..+. ..+|-|-++.+|.
T Consensus 145 rTAilmPiynEd~~rVfAgLrA~~eSla~Tg~~~~FD~FVLSD-s~dpdialAEq~a~~~l~~e~~g~~~ifYRrRr~n~ 223 (736)
T COG2943 145 RTAILMPIYNEDVNRVFAGLRATYESLAATGHAEHFDFFVLSD-SRDPDIALAEQKAWAELCRELGGEGNIFYRRRRRNV 223 (736)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHH
T ss_conf 2157730346678999998999999998617612002899748-998225666899999999983677726640675552
Q ss_pred C-HHHHHHHHHHHC--CCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCC----------CEEEECCC
Q ss_conf 5-648999999965--9989999769875273207999999873247554202220675898----------36542256
Q gi|254780918|r 136 H-ISAASNSAAQLA--TSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQ----------IRSGPYFK 202 (623)
Q Consensus 136 g-~~~a~N~~l~~a--~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g----------~~~~p~fk 202 (623)
+ .+++.-.=.+.= .-+|...||+|-+.+++++..+++.++.+|++++|-+--..++.+. ...+|.|-
T Consensus 224 ~RKaGNIaDfcrRwG~~Y~~MlVLDADSvMtgd~lvrLv~~ME~~P~aGlIQt~P~~~gg~TL~AR~qQFatrvYGpl~~ 303 (736)
T COG2943 224 KRKAGNIADFCRRWGSAYSYMLVLDADSVMTGDCLVRLVRLMEANPDAGLIQTSPKASGGDTLYARCQQFATRVYGPLFT 303 (736)
T ss_pred CCCCCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEECCHHHCCCCHHHHHHHHHHHHHHCHHHH
T ss_conf 23346788999873765325899605433572789999999852999760321503328652999999989887133776
Q ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 67896674147854314576899999718878
Q gi|254780918|r 203 YDFNPELFHVHNMITHLGVYRTETFKKIGGFR 234 (623)
Q Consensus 203 p~~~~~~l~s~nyi~~~~~~rr~~~~~iGgf~ 234 (623)
....--.+--.+|-||..++|.+.|-+.-|..
T Consensus 304 ~GLawW~~~Es~yWGHNAIIRt~aF~~hcgLp 335 (736)
T COG2943 304 AGLAWWQLGESHYWGHNAIIRTKAFIEHCGLP 335 (736)
T ss_pred HHHHHHHCCCCCCCCCCCEEECHHHHHHCCCC
T ss_conf 55678725655544442102304668744899
No 120
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=98.40 E-value=1.2e-05 Score=52.87 Aligned_cols=185 Identities=14% Similarity=0.230 Sum_probs=105.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCC---------CC-C
Q ss_conf 6999953774556999998764207-97515799714899816899999998630888279975788---------87-3
Q gi|254780918|r 326 VSIIIPTYNHHHLLKICLESIYHKT-TYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTH---------PF-N 394 (623)
Q Consensus 326 VSIIIp~~n~~~~l~~cl~Sl~~~t-~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~---------~~-n 394 (623)
|-|+|.++|+.+.|++||+||++.. ....+.|+|-.||.. +++.+.++.+. ..+..+...+. .+ +
T Consensus 2 ipVlV~a~NRp~~l~r~L~sLl~~~p~~~~~pIiVsqDg~~-~~~~~v~~~yg---~~i~~i~~~~~~~~~~~~~~k~~~ 77 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGY-EEVADVAKSFG---DGVTHIQHPPISIKNVNPPHKFQG 77 (334)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC-HHHHHHHHHHC---CEEEEEECCCCCCCCCCCHHHHHH
T ss_conf 11899955877999999999985186678744899947998-79999999725---102789678866556675255566
Q ss_pred HHH-------HHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHH---HH-CCCCEEEEEEEEECCCCCCCCCCCEEEECC
Q ss_conf 388-------9898786148974744058827828168899887---74-289816995376646767567787044132
Q gi|254780918|r 395 YSR-------INNNATLHAKGQYFCFLNNDTEVINGQWLSEMMG---IA-SQPQVGAVGARLWYRRKKLWKRSKRLQHGG 463 (623)
Q Consensus 395 ~s~-------~~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~---~~-~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG 463 (623)
|.+ +.|.....-..+.++++-+|.++ +||.++-+.+ .+ .++.+=||++ .+ .+|.-++.
T Consensus 78 Y~~Ia~HYk~aL~~~F~~~~~~~vIIlEDDL~v-spDFf~YF~~t~~LL~~D~sl~cISA--WN-------DnG~~~~v- 146 (334)
T cd02514 78 YYRIARHYKWALTQTFNLFGYSFVIILEDDLDI-APDFFSYFQATLPLLEEDPSLWCISA--WN-------DNGKEHFV- 146 (334)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CHHHHHHHHHHHHHHCCCCCEEEEEE--EC-------CCCCCCCC-
T ss_conf 899999999999998630588769999456333-57599999975687615996689973--31-------67865557-
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHH--HHC
Q ss_conf 540678656643225655557644222233444441110110204388889871799976876323168899999--974
Q gi|254780918|r 464 VIMGINNIAGHKNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRI--LEA 541 (623)
Q Consensus 464 ~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~--~~~ 541 (623)
.. .+.. ....++. .|-..|++|++|+++. .-.|.. +.|--+|. .+.
T Consensus 147 ---------~~----------~~~~-----lyRsdff--pGLGWml~r~lw~El~----pkWP~~--~WDdWmR~p~~Rk 194 (334)
T cd02514 147 ---------DD----------TPSL-----LYRTDFF--PGLGWMLTRKLWKELE----PKWPKA--FWDDWMRLPEQRK 194 (334)
T ss_pred ---------CC----------CCCC-----EEEECCC--CCHHHHHHHHHHHHHC----CCCCCC--CHHHHHCCHHHHC
T ss_conf ---------87----------6110-----2430467--7356651087897625----579987--4176650556517
Q ss_pred CCEEEECCCEEEEEEC
Q ss_conf 9819984754999517
Q gi|254780918|r 542 GYRNVWTPHADLYHDE 557 (623)
Q Consensus 542 G~r~v~~P~a~v~H~e 557 (623)
|-.++.=-=++.+|.+
T Consensus 195 gR~cIrPEisRT~~FG 210 (334)
T cd02514 195 GRECIRPEISRTYHFG 210 (334)
T ss_pred CCCCCCCCCCCCCCCC
T ss_conf 9741256665333478
No 121
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=98.39 E-value=3e-06 Score=56.61 Aligned_cols=200 Identities=17% Similarity=0.144 Sum_probs=104.8
Q ss_pred CCEEEEEECCCCHHH---HHHHHH--H-HHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE-CCCCCCH-
Q ss_conf 816999953774556---999998--7-6420797515799714899816899999998630888279975-7888733-
Q gi|254780918|r 324 PLVSIIIPTYNHHHL---LKICLE--S-IYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITD-NTHPFNY- 395 (623)
Q Consensus 324 P~VSIIIp~~n~~~~---l~~cl~--S-l~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~-~~~~~n~- 395 (623)
|+.++|||.....+. -.+.+. + +..-|+-..++||++++.+.-. ..+..+-...+++.++.. .+++|--
T Consensus 2 ~~~~~iiPv~~S~e~p~~~~R~f~~~~~~k~fts~~~~~vi~~~~~~~~d---~~i~~~i~~~~~~~yl~~~s~~~F~s~ 78 (346)
T COG4092 2 QPNGEIIPVAESEELPLTDSRQFSRTSAVKVFTSSDITMVICLRAHEVMD---RLIRSYIDPMPRVLYLDFGSPEPFASE 78 (346)
T ss_pred CCCCEEEECCHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHH---HHHHHHHCCCCCEEEEECCCCCCCCCH
T ss_conf 97625852311101530688987667666530656667999970615678---999998554651478834887645551
Q ss_pred HHHHHHHHHHCC----CCEEEEECCCCEEECHHHHHHHHHHHCCCCE-EEEEEEEECCCCCCCCCCCEEEECCEEE-CCC
Q ss_conf 889898786148----9747440588278281688998877428981-6995376646767567787044132540-678
Q gi|254780918|r 396 SRINNNATLHAK----GQYFCFLNNDTEVINGQWLSEMMGIASQPQV-GAVGARLWYRRKKLWKRSKRLQHGGVIM-GIN 469 (623)
Q Consensus 396 s~~~N~g~~~a~----geyilfLn~D~~v~~~~wL~~Ll~~~~~~~v-G~Vg~~ll~~~~~~~~~d~~iqhaG~v~-g~~ 469 (623)
+...|.|+..+. +++|+|||-|+. .+-|-.+.|+..++-... ...-+-++++-.-.... +|.+. ...
T Consensus 79 ~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~-~S~dnF~k~l~~~~ikk~~tnI~a~~vlPV~~LNk~------~~~v~f~~~ 151 (346)
T COG4092 79 TICANNGADYSHEKCESNLVLFLDVDCF-GSSDNFAKMLSIATIKKMRTNIDAPLVLPVYHLNKA------DTQVFFDVE 151 (346)
T ss_pred HHHHHCCCHHHHCCCCCCEEEEEECCCC-CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHH------HHHHHHHHH
T ss_conf 4665333123310246667999834100-337789999989989888740575506541101534------304778888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHH
Q ss_conf 65664322565555764422223344444111011020438888987179997687632316889999997
Q gi|254780918|r 470 NIAGHKNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILE 540 (623)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~ 540 (623)
...+ .......-....+ ....-+.|......+|.|..|-..||.||+|...++||.|+--|+..
T Consensus 152 d~f~------d~~i~es~~~~~~-~~~~ff~~~~T~~~liN~~~F~~tgGydE~F~GhG~EDfe~~~R~~l 215 (346)
T COG4092 152 DMFL------DAMIFESPLAEFR-KEDNFFIAPYTNIFLINRRMFSLTGGYDERFRGHGSEDFEFLTRLGL 215 (346)
T ss_pred HHHH------HHHHHHHHHHHHC-CCCCCCCCCCCCEEEEEHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 7764------5676651787738-54320136644238971667777348860124577026999999999
No 122
>pfam03142 Chitin_synth_2 Chitin synthase. Members of this family are fungal chitin synthase EC:2.4.1.16 enzymes. They catalyse chitin synthesis as follows: UDP-N-acetyl-D-glucosamine + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <= UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Probab=98.33 E-value=2.7e-05 Score=50.71 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=29.7
Q ss_pred CEEEE-ECCCCCCHHHHHHHHHHHHHCCCCCE-EEE-EECCC
Q ss_conf 78999-74758988899999999982889974-899-98775
Q gi|254780918|r 68 LISVI-MPVYKIKKEWLEMAIESVRSQIYSHW-ELC-IAEDC 106 (623)
Q Consensus 68 ~iSIi-ip~yn~~~~~L~~~i~Si~~Qty~~~-Eli-ivdD~ 106 (623)
++.|+ +|+||..++.|+++|+|+..|+|++- .+| |+-||
T Consensus 25 ~~~ic~VpcYsE~ee~Lr~tLDSl~~~~Y~d~rKli~VIcDG 66 (536)
T pfam03142 25 KHTICLVTCYSEGEEGLRTTLDSLATTDYPDSHKLLLVICDG 66 (536)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 069999635369879999999999854799873499998187
No 123
>pfam03071 GNT-I GNT-I family. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) EC:2.4.1.101 transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C-terminus.
Probab=98.27 E-value=8.5e-05 Score=47.68 Aligned_cols=191 Identities=15% Similarity=0.225 Sum_probs=108.5
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHCCCC-CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE--------CCC
Q ss_conf 88881699995377455699999876420797-515799714899816899999998630888279975--------788
Q gi|254780918|r 321 NPPPLVSIIIPTYNHHHLLKICLESIYHKTTY-SSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITD--------NTH 391 (623)
Q Consensus 321 ~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y-~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~--------~~~ 391 (623)
..+|-+.|+|-+.|+.+.+++||++|++.-.- ..|-|||--|++.. +|...++++..+ +..+.. .++
T Consensus 90 ~~~pVipVlV~ACnR~~~v~r~ld~llkyRPS~e~fPIiVSQDc~~~-~t~~vi~syg~~---v~~i~q~d~~~i~v~p~ 165 (434)
T pfam03071 90 PWPPVIPVLVFACNRADYVRRHVEKLLHYRPSAEKFPIIVSQDCDHE-EVKKEVLSYGNQ---VTYIKHLDFEPIAIPPG 165 (434)
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCH-HHHHHHHHHHHC---EEEEECCCCCCCCCCCC
T ss_conf 88872589999748748999999999713885112997995069988-999999965300---27871588788878975
Q ss_pred --CC-CH-------HHHHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHH---HH-CCCCEEEEEEEEECCCCCCCCCCC
Q ss_conf --87-33-------889898786148974744058827828168899887---74-289816995376646767567787
Q gi|254780918|r 392 --PF-NY-------SRINNNATLHAKGQYFCFLNNDTEVINGQWLSEMMG---IA-SQPQVGAVGARLWYRRKKLWKRSK 457 (623)
Q Consensus 392 --~~-n~-------s~~~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~---~~-~~~~vG~Vg~~ll~~~~~~~~~d~ 457 (623)
.| +| .=+.|.....-.-+-++++.+|.++ .||.++-..+ .+ .++.+-||++ ++ .+|
T Consensus 166 ~kk~~gYykIarHYkwAL~~vF~~~~~~~vIIvEdDL~v-apDFf~yF~~t~~lL~~D~sl~cvSA--WN-------DnG 235 (434)
T pfam03071 166 HRKFTAYYKIARHYKWALNQVFYKHNFSSVIITEDDLEI-APDFFSYFSATRYLLERDPSLWCVSA--WN-------DNG 235 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CCCHHHHHHHHHHHHCCCCCCEEEEE--CC-------CCC
T ss_conf 230144899998888899878766388759998246443-63579999973798715997306752--04-------578
Q ss_pred EEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHH
Q ss_conf 04413254067865664322565555764422223344444111011020438888987179997687632316889999
Q gi|254780918|r 458 RLQHGGVIMGINNIAGHKNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLR 537 (623)
Q Consensus 458 ~iqhaG~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR 537 (623)
.-+..+ . ..+...+ .....| |-..|+.|++|+++.. -.|.+|- |=-+|
T Consensus 236 ~~~~v~------~--~~~~~Ly-RsdffP-----------------GLGWml~r~lW~EL~p----kWP~~~W--DdWmR 283 (434)
T pfam03071 236 KEQNVD------D--SRPYTLY-RSDFFP-----------------GLGWMLSRKTWDELEP----KWPKAFW--DDWMR 283 (434)
T ss_pred CCCCCC------C--CCCCCEE-ECCCCC-----------------CHHHHHHHHHHHHHCC----CCCCCCH--HHHHC
T ss_conf 644567------7--8866146-226777-----------------3577613888976355----7987652--75530
Q ss_pred H--HHCCCEEEECCCEEEEEEC
Q ss_conf 9--9749819984754999517
Q gi|254780918|r 538 I--LEAGYRNVWTPHADLYHDE 557 (623)
Q Consensus 538 ~--~~~G~r~v~~P~a~v~H~e 557 (623)
. .+.|-.++.---++-+|.+
T Consensus 284 ~p~~rkgR~cIrPEvsRT~~fG 305 (434)
T pfam03071 284 LPEQRKGRQCIRPEISRTMNFG 305 (434)
T ss_pred CHHHCCCCCCCCCCCCCCEECC
T ss_conf 2343078742456653300045
No 124
>KOG3588 consensus
Probab=98.19 E-value=8.4e-05 Score=47.69 Aligned_cols=206 Identities=17% Similarity=0.198 Sum_probs=104.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCC-CCHHHH-HHHHHHHHHHCCCEEEEECCCCCCHH--H
Q ss_conf 4589789997475898889999999998288997489998775-780679-99999988757988999808888564--8
Q gi|254780918|r 64 QNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDC-SGDIET-VSLLKKYANMDSRIKVVFRAKNGHIS--A 139 (623)
Q Consensus 64 ~~~P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~-S~d~~~-~~~l~~~~~~d~ri~~~~~~~n~g~~--~ 139 (623)
-..|-|.+|||... ....+.+...|+..---.+.+++++-=+ |.+... ++.+..+....+++ .....|+-+| .
T Consensus 226 i~~pgih~i~pl~g-r~~~f~rf~q~~c~~~d~~l~l~vv~f~~se~e~ak~e~~tslra~f~~~--q~l~lngeFSRa~ 302 (494)
T KOG3588 226 IEDPGIHMIMPLRG-RAAIFARFAQSICARGDDRLALSVVYFGYSEDEMAKRETITSLRASFIPV--QFLGLNGEFSRAK 302 (494)
T ss_pred CCCCCCEEEEECCC-HHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCE--EEECCCCHHHHHH
T ss_conf 24897369875233-27776420688750579826999999547875777666777776238754--8940442011568
Q ss_pred HHHHHHHHCCC-CEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCC----CC--CEEECCCCCEE----EECCCCCCCHH
Q ss_conf 99999996599-8999976987527320799999987324755420----22--20675898365----42256678966
Q gi|254780918|r 140 ASNSAAQLATS-EWLALLDHDDLLHPTALYYVADAINNNPNAEIIY----SD--EDKINENQIRS----GPYFKYDFNPE 208 (623)
Q Consensus 140 a~N~~l~~a~G-e~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iY----sD--e~~i~~~g~~~----~p~fkp~~~~~ 208 (623)
|+..|.+.-.. -.+.|.|-|-.++.++|.++- ++.-|+..+.| |. ...+.+++... .-.+|-+- .
T Consensus 303 aL~vGAe~~~~nvLLFfcDVDi~FT~efL~rcr--~Nt~~gkqiyfPivFS~ynp~ivy~~~~~~p~e~~~~~~~~t--G 378 (494)
T KOG3588 303 ALMVGAETLNANVLLFFCDVDIYFTTEFLNRCR--LNTILGKQIYFPIVFSQYNPEIVYEQDKPLPAEQQLVIKKDT--G 378 (494)
T ss_pred HHHHHHHHHCCCEEEEEECCCEEEHHHHHHHHH--HCCCCCCEEEEEEEEECCCCCEEECCCCCCCHHHHEEECCCC--C
T ss_conf 988647775216269984120014099998876--436778657898887404764153179999646742441565--5
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCCCCCC--CCCCHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCCCCH
Q ss_conf 7414785431457689999971887898773--02741367886424875220068422799533885338801
Q gi|254780918|r 209 LFHVHNMITHLGVYRTETFKKIGGFREKFEG--AQDYDLVLRFLENIDLSQIIHIPRVLYHWRMHDNSTAQKIG 280 (623)
Q Consensus 209 ~l~s~nyi~~~~~~rr~~~~~iGgf~~~~~~--~~D~Dl~lR~~~~~~~~~i~hip~vLy~~R~~~~s~~~~~~ 280 (623)
..+ +|--.+.+.-|+-|..+||||.+..| .+|.||.-+.+.. + -+|.+.|++-...+-|+---..+..
T Consensus 379 fwR--dfGfGmtc~yrsd~~~vgGFD~~I~GWG~EDV~Ly~K~v~~-~-l~viR~p~pGl~H~~H~~~C~~~l~ 448 (494)
T KOG3588 379 FWR--DFGFGMTCQYRSDFLTVGGFDMEIKGWGGEDVDLYRKYVHS-G-LKVIRTPEPGLFHLWHPKRCDDNLT 448 (494)
T ss_pred CCC--CCCCCEEEEEECCCEEECCCCEEEECCCCHHHHHHHHHHHC-C-CEEEECCCCCEEEEECCCCCCCCCC
T ss_conf 201--05776467650351322575225422574037999999853-8-4799669996688633543677899
No 125
>pfam03142 Chitin_synth_2 Chitin synthase. Members of this family are fungal chitin synthase EC:2.4.1.16 enzymes. They catalyse chitin synthesis as follows: UDP-N-acetyl-D-glucosamine + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <= UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Probab=98.15 E-value=4.2e-05 Score=49.57 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=21.9
Q ss_pred CCCCEEEEECCCCEEECHHHHHHHHHHH-CCCCEEEEEE
Q ss_conf 4897474405882782816889988774-2898169953
Q gi|254780918|r 406 AKGQYFCFLNNDTEVINGQWLSEMMGIA-SQPQVGAVGA 443 (623)
Q Consensus 406 a~geyilfLn~D~~v~~~~wL~~Ll~~~-~~~~vG~Vg~ 443 (623)
.--||++-+|+||.| .|+.+.+|++.+ .+|++..|++
T Consensus 199 d~ye~~l~vDADT~V-~pdsl~~mv~~~~~D~~i~GvCG 236 (536)
T pfam03142 199 DFYETVLMVDADTKV-FPDSLTRMVAAMVKDPEIMGLCG 236 (536)
T ss_pred CCEEEEEEECCCCEE-CCHHHHHHHHHHHCCCCEEEEEC
T ss_conf 157899996688628-80689999999815986788412
No 126
>pfam11316 DUF3118 Protein of unknown function (DUF3118). This bacterial family of proteins has no known function.
Probab=97.91 E-value=0.00039 Score=43.65 Aligned_cols=122 Identities=17% Similarity=0.170 Sum_probs=71.0
Q ss_pred HHHHHHHHHCCCCCEEEEE-ECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHC---CCC--EEEEEC
Q ss_conf 9999999828899748999-8775780679999999887579889998088885648999999965---998--999976
Q gi|254780918|r 84 EMAIESVRSQIYSHWELCI-AEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQLA---TSE--WLALLD 157 (623)
Q Consensus 84 ~~~i~Si~~Qty~~~Elii-vdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l~~a---~Ge--~i~~lD 157 (623)
.-||-||.+||-++|+++| +++..++ .-++-|+.+....++++++..+... ...+.-.++..+ .++ .-..||
T Consensus 45 ~~~Lpsl~~Qtd~dF~~lv~~~~~~P~-~~r~RL~~L~a~~pq~~i~~~~p~~-hr~~~~~~i~~~~~~~~~~~lqfRlD 122 (235)
T pfam11316 45 TICLPSLAAQTDPDFTLLVLIGDDMPE-PYRDRLEDLTADLPQFRIVFRPPGP-HREAMREAINAARGDGTDPVLQFRLD 122 (235)
T ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCH-HHHHHHHHHHCCCCCEEEEECCCCC-HHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 764027764668992499995686888-9999999986479952899618842-89999999986416899825886606
Q ss_pred CCCCCCCCHHHHHHHHHH-------HCCCCCCCCCCC--EEECCCCCEEEECCCCCCCH
Q ss_conf 987527320799999987-------324755420222--06758983654225667896
Q gi|254780918|r 158 HDDLLHPTALYYVADAIN-------NNPNAEIIYSDE--DKINENQIRSGPYFKYDFNP 207 (623)
Q Consensus 158 ~DD~l~p~~L~~~~~~l~-------~~p~~~~iYsDe--~~i~~~g~~~~p~fkp~~~~ 207 (623)
+||-++-+..+++-++.. +++...+-|+.- -..+++|....+.+.|-||+
T Consensus 123 DDDAvs~DFVarlR~~a~~~~~l~~~~~~~aidf~rGy~~~~~~~gi~~~~~~~~~~~~ 181 (235)
T pfam11316 123 DDDAVSVDFVARLRRAAADLRPLWAANRRVAIDFNRGYVLRLEGDGIVALPLRTPFWNA 181 (235)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCEEEEEEECCCCCC
T ss_conf 86302589999999999754101256984899837815998558961677776267774
No 127
>pfam11397 GlcNAc Glycosyltransferase (GlcNAc). GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1, a ubiquitous eukaryotic protein, in the cytoplasm.
Probab=97.91 E-value=0.0016 Score=39.87 Aligned_cols=216 Identities=16% Similarity=0.120 Sum_probs=114.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCCC-CEEEEEECCCCCCHHHHHHHHH--------------HHHCCCCCEEEEEC-
Q ss_conf 6999953774556999998764207975-1579971489981689999999--------------86308882799757-
Q gi|254780918|r 326 VSIIIPTYNHHHLLKICLESIYHKTTYS-SFEVIIIDNLSDDSKTFLYLQK--------------IQKKYPNLRVITDN- 389 (623)
Q Consensus 326 VSIIIp~~n~~~~l~~cl~Sl~~~t~y~-~~EiivVdn~S~d~~t~~~l~~--------------~~~~~~~~~~i~~~- 389 (623)
|=|-|++|... .+..+|.+++++..+| ++-|-|++-.+.+.+.-.-... ......+++++.-.
T Consensus 2 IFVsIASYRD~-el~~Tl~~~~~~A~~P~rl~vGI~~Q~~~~d~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ir~~~i~~ 80 (324)
T pfam11397 2 IFVSIASYRDP-ELIPTLHDLFDRAANPERLYVGVCWQHSADDPPCLSLTCFPAEGYGGPSPLHLLALNGANVRLIHVPP 80 (324)
T ss_pred EEEEEECCCCC-CHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECH
T ss_conf 68986335784-40999999998267988418999982688886210012203421122454321113467169998287
Q ss_pred --CCCCCHHHHHHHHHHHCCC-CEEEEECCCCEEECHHHHHHHHHHHCC--CCEEEEEEEEECCCCCCCCCCC-------
Q ss_conf --8887338898987861489-747440588278281688998877428--9816995376646767567787-------
Q gi|254780918|r 390 --THPFNYSRINNNATLHAKG-QYFCFLNNDTEVINGQWLSEMMGIASQ--PQVGAVGARLWYRRKKLWKRSK------- 457 (623)
Q Consensus 390 --~~~~n~s~~~N~g~~~a~g-eyilfLn~D~~v~~~~wL~~Ll~~~~~--~~vG~Vg~~ll~~~~~~~~~d~------- 457 (623)
..|-.+|+ +++.+.-+| +|.+-+|+.+. +.++|=+.|++..+. .+-.+... |+..-....+.
T Consensus 81 ~~s~G~~~AR--~~~~~~~~~E~y~lqiDsH~~-f~~~WD~~LI~~~~~~~~~kpVLT~---Yp~~y~~~~~~~~~~~~~ 154 (324)
T pfam11397 81 DQSRGPCWAR--YLAQLLYNGEDYTLQIDSHTR-FVPGWDELLITMLERLRSPKPVLSH---YPPGYQPEKSDPELEKTT 154 (324)
T ss_pred HHCCCHHHHH--HHHHHHHCCCEEEEEEEEEEE-ECCCHHHHHHHHHHHCCCCCEEEEE---CCCCCCCCCCCCCCCCCC
T ss_conf 7645808999--999998568817999700045-5137889999999973898816840---787756667875455766
Q ss_pred -EEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHH
Q ss_conf -0441325406786566432256555576442222334444411101102043888898717999768763231688999
Q gi|254780918|r 458 -RLQHGGVIMGINNIAGHKNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCL 536 (623)
Q Consensus 458 -~iqhaG~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlcl 536 (623)
....... +...|.... ... .... ......+..-..++|.|++-+.+...+|. +|..++ -.+|++-+.+
T Consensus 155 ~~~~~~~~-f~~~g~~~~----~~~--~~~~--~~~~~~P~~~~f~aagF~Fa~g~fv~eVP-yDP~l~-F~GEEis~a~ 223 (324)
T pfam11397 155 VTRMCFAE-FLPYGIVKL----RSR--WITP--ATQLSEPLPQGFVAAGFLFADGSFVRDVP-FDPHLL-FDGEEILYSA 223 (324)
T ss_pred CCEEEEEE-ECCCCCEEE----CCC--CCCC--CCCCCCCCCCCCCCCEEEEECCEEHHHCC-CCCCEE-ECHHHHHHHH
T ss_conf 77888899-999984541----554--2257--66678753310012324785111021269-995204-4327999999
Q ss_pred HHHHCCCEEEECCCEEEEEECCC
Q ss_conf 99974981998475499951773
Q gi|254780918|r 537 RILEAGYRNVWTPHADLYHDESR 559 (623)
Q Consensus 537 R~~~~G~r~v~~P~a~v~H~es~ 559 (623)
|+.-.||.+..-+...++|.-+.
T Consensus 224 R~~T~GYDlf~P~~~~~~H~Y~r 246 (324)
T pfam11397 224 RAWTHGYDLYHPHRLLLFHLYTR 246 (324)
T ss_pred HHHHCCCCEECCCCCEEEEECCC
T ss_conf 99876885556887627996658
No 128
>pfam05679 CHGN Chondroitin N-acetylgalactosaminyltransferase.
Probab=97.75 E-value=0.0029 Score=38.24 Aligned_cols=209 Identities=13% Similarity=0.141 Sum_probs=115.9
Q ss_pred CCCCCEEEEEECCCC-HHHHHHHHHHHHH---CCCCCCEEEEE--ECC--CCCC-HHHHHHHHHHHHCCCCCEE--EEEC
Q ss_conf 888816999953774-5569999987642---07975157997--148--9981-6899999998630888279--9757
Q gi|254780918|r 321 NPPPLVSIIIPTYNH-HHLLKICLESIYH---KTTYSSFEVII--IDN--LSDD-SKTFLYLQKIQKKYPNLRV--ITDN 389 (623)
Q Consensus 321 ~~~P~VSIIIp~~n~-~~~l~~cl~Sl~~---~t~y~~~Eiiv--Vdn--~S~d-~~t~~~l~~~~~~~~~~~~--i~~~ 389 (623)
.+..+|.||+|.-.+ .+...+.++...+ ++. .+..+.| +-+ .+.+ .+..+.+.++..+++..++ |.-.
T Consensus 244 te~trV~iIlPL~~r~~~~f~rFl~~ye~vCL~~~-~n~~L~vv~~~~~~~~~~~~~~~~l~~~l~~ky~~~~i~~i~v~ 322 (498)
T pfam05679 244 TESTRVHILLPLAGRQVPTALRFLENFERVCLEPQ-DNTFLTLILYYRPAESPSKGDNDNLALELRRRYPGARIAWLSVR 322 (498)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCC-CCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 56881899995788757999999999999965889-97699999960765553033589999999965888612699936
Q ss_pred CCCCCHHHHHHHHHHHCCCC-EEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECC
Q ss_conf 88873388989878614897-47440588278281688998877428981699537664676756778704413254067
Q gi|254780918|r 390 THPFNYSRINNNATLHAKGQ-YFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGI 468 (623)
Q Consensus 390 ~~~~n~s~~~N~g~~~a~ge-yilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~ 468 (623)
.+.|.-+++.-.|+++-..| .++|+|.|++ ++++.|.+--.... .|-+++|+-.-... |-.|-+++.-.
T Consensus 323 ~~~fSr~~~ld~~a~k~~~d~L~f~~dvd~~-f~~~fLnRcR~Nti------~g~Qvf~Pi~Fs~Y-~P~i~~~~~~~-- 392 (498)
T pfam05679 323 LGAFSRGVALDLASKKHGLDTLLFLCDVDMV-FTSDFLNRCRMNTI------QGFQVYFPIVFSEY-DPEWSSARLPP-- 392 (498)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEECCCE-ECHHHHHHHHHHCC------CCCEEEEECCCCCC-CCCEECCCCCC--
T ss_conf 8876568999999875799749999605706-75889989876143------67357861223434-87521078899--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHH-HHCCCCHHHHHHHCCHHHHHHHHHHCC-CEEE
Q ss_conf 86566432256555576442222334444411101102043888898-717999768763231688999999749-8199
Q gi|254780918|r 469 NNIAGHKNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFM-HVGGFDEKNTPVVFSDIDLCLRILEAG-YRNV 546 (623)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~-~iGGfDE~~~~~~~eDvDlclR~~~~G-~r~v 546 (623)
....... ....|+.. . .++ |-..+.+++.+. .+||||..--..+.||+||.-+.-+.| ..+.
T Consensus 393 ------~~~~~~i-~~~~G~~~-~----~~f----g~~c~Y~sDy~~ar~~~~d~~i~g~g~edv~l~~~f~~~~~l~Vf 456 (498)
T pfam05679 393 ------ECETCDV-GQESGYFD-R----FGY----GVACFYKSDYVAARAGGFDTEIEGWGLEDVDLLEKFLRAGSLHVL 456 (498)
T ss_pred ------CCCCCCC-CCCCCCCC-C----CCC----CEEEEECCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf ------7555543-57777233-5----899----708871115667631788732235454147899999735965899
Q ss_pred ECCCEEEEEE
Q ss_conf 8475499951
Q gi|254780918|r 547 WTPHADLYHD 556 (623)
Q Consensus 547 ~~P~a~v~H~ 556 (623)
=.|+.-+.|.
T Consensus 457 Ra~ep~L~h~ 466 (498)
T pfam05679 457 RAVEPGLVHI 466 (498)
T ss_pred ECCCCCEEEE
T ss_conf 7789985887
No 129
>KOG2571 consensus
Probab=97.65 E-value=4e-05 Score=49.70 Aligned_cols=153 Identities=18% Similarity=0.255 Sum_probs=85.4
Q ss_pred HHHHHHCCC--CEEEEECCCCEEECHHHHHHHHHHHC-CCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCC
Q ss_conf 987861489--74744058827828168899887742-898169953766467675677870441325406786566432
Q gi|254780918|r 400 NNATLHAKG--QYFCFLNNDTEVINGQWLSEMMGIAS-QPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKN 476 (623)
Q Consensus 400 N~g~~~a~g--eyilfLn~D~~v~~~~wL~~Ll~~~~-~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~ 476 (623)
+........ +||+++|+|+.+ +|+.+-+|+..+. +|+||++|++++...+ |++.-... |
T Consensus 431 y~~~~~L~~~v~~il~vD~dT~~-~P~ai~~lv~~f~~dp~VggaCG~I~~~~~------------~w~v~~Q~-----F 492 (862)
T KOG2571 431 YTAFKALMPSVDYILVVDADTRL-DPDALYHLVKVFDEDPQVGGACGRILNKGG------------SWVVAYQN-----F 492 (862)
T ss_pred HHHHHHHCCCCEEEEEECCCCCC-CCHHHHHHHHHHCCCCCCCEECCCCCCCCC------------CEEEEHHH-----H
T ss_conf 99999846762389996389852-847899999985208630201561136778------------44875788-----8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHC------C-CCH---HHHHHHCCHHHHHHHHHHCCCEEE
Q ss_conf 256555576442222334444411101102043888898717------9-997---687632316889999997498199
Q gi|254780918|r 477 KHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVG------G-FDE---KNTPVVFSDIDLCLRILEAGYRNV 546 (623)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iG------G-fDE---~~~~~~~eDvDlclR~~~~G~r~v 546 (623)
...-........ ..+-.-+++..|+.-|.|-+.+..=- - +.+ ..+.--.||-=||.++..+||++-
T Consensus 493 EY~Ish~l~Ka~----ESvFG~VsclPGcfs~yR~~aL~~~~~~~~y~~~~~~~~~~~~~~~geDR~L~~~llskgy~l~ 568 (862)
T KOG2571 493 EYAISHNLQKAT----ESVFGCVSCLPGCFSLYRASALMDQFVEYFYGEKFSGPRHGIQYSLGEDRWLCTLLLSKGYRLK 568 (862)
T ss_pred HHHHHHHHHHHH----HHHCEEEEECCCHHHHHHHHHHHCCHHHHHHCHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEE
T ss_conf 999998877765----6421047866751689999998514487651223127664443231035799999985261455
Q ss_pred ECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 847549995177336776689999999999999999883888
Q gi|254780918|r 547 WTPHADLYHDESRTRKYDHEDPAKMIVFQEACQYLQKRWKKI 588 (623)
Q Consensus 547 ~~P~a~v~H~es~srg~~~~~~~k~~~~~~~~~~~~~rW~~~ 588 (623)
|++.+... .+.|+...++..+ ++||-..
T Consensus 569 Y~a~s~a~----------t~~Pe~~~efl~Q----rrRW~~s 596 (862)
T KOG2571 569 YVAASDAE----------TEAPESFLEFLNQ----RRRWLNS 596 (862)
T ss_pred EECCCCCC----------CCCCHHHHHHHHH----HHHHCCC
T ss_conf 41254433----------0185768899987----6631044
No 130
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=97.62 E-value=0.0038 Score=37.59 Aligned_cols=204 Identities=17% Similarity=0.204 Sum_probs=107.6
Q ss_pred CCCEEEEEECCCCH-----HHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHH----HHHHHHHHCCC---CCEEEEECC
Q ss_conf 88169999537745-----5699999876420797515799714899816899----99999863088---827997578
Q gi|254780918|r 323 PPLVSIIIPTYNHH-----HLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTF----LYLQKIQKKYP---NLRVITDNT 390 (623)
Q Consensus 323 ~P~VSIIIp~~n~~-----~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~----~~l~~~~~~~~---~~~~i~~~~ 390 (623)
.-++.|++|.||+. .-++.+.+||.+.-.-.+|++.|.-| |+|++.. ..+..+..+.+ ++.+-+...
T Consensus 122 ~~rtAilmPiyNEd~~~vfa~l~Am~~sl~~tg~~~~Fd~fILSD-T~dp~i~~~Ee~a~~~L~~~~~~~~ri~YRRR~~ 200 (663)
T PRK05454 122 EARTAILMPIYNEDPARVFAGLRAMYESLAATGHLAHFDFFILSD-TTDPDIAAAEEAAWLELRAELGGEGRIFYRRRRR 200 (663)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC-CCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 777699951778999999999999999999718866603899748-9976689999999999998658878605531553
Q ss_pred CCCCHHHHHHHH--HHH--CCCCEEEEECCCCEEECHHHHHHHHHHHC-CCCEEEEE--EEEECCCCCCCCCCCEE-EEC
Q ss_conf 887338898987--861--48974744058827828168899887742-89816995--37664676756778704-413
Q gi|254780918|r 391 HPFNYSRINNNA--TLH--AKGQYFCFLNNDTEVINGQWLSEMMGIAS-QPQVGAVG--ARLWYRRKKLWKRSKRL-QHG 462 (623)
Q Consensus 391 ~~~n~s~~~N~g--~~~--a~geyilfLn~D~~v~~~~wL~~Ll~~~~-~~~vG~Vg--~~ll~~~~~~~~~d~~i-qha 462 (623)
+ -+..++ |.+ ++. +.-||.+.||.|- +.+.+.+-+|+..++ +|++|+.+ |+++..+.. =+++ |.|
T Consensus 201 N-~~rKaG-NIaDf~rrwG~~Y~~MiVLDADS-lMsG~ti~~lv~~Me~~P~~GliQT~P~~v~~~Tl----FaR~qQFa 273 (663)
T PRK05454 201 N-VKRKAG-NIADFCRRWGGRYDYMVVLDADS-LMSGDTLVRLVRLMEANPRAGLIQTLPKAVGGDTL----FARLQQFA 273 (663)
T ss_pred C-CCCCCC-CHHHHHHHCCCCCCEEEEECCCC-CCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCH----HHHHHHHH
T ss_conf 5-577775-69999986088775266623413-46749999999998649986451156705577679----99999999
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHH--HHHHCC--HHHH--HH
Q ss_conf 25406786566432256555576442222334444411101102043888898717999768--763231--6889--99
Q gi|254780918|r 463 GVIMGINNIAGHKNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKN--TPVVFS--DIDL--CL 536 (623)
Q Consensus 463 G~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~--~~~~~e--DvDl--cl 536 (623)
+-+.|.--.+|-... . .-.-||- |..-.||-+.|-+--|+-+-- -+.+++ --|| .-
T Consensus 274 ~r~ygp~~~~Gla~W--------------q-g~eg~yW---GHNAIIR~~aF~~~cgLP~LpG~~PfGG~ILSHDfVEAA 335 (663)
T PRK05454 274 TRVYGPLFAAGLAFW--------------Q-GGEGNYW---GHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAA 335 (663)
T ss_pred HHHCCHHHHHHHHHH--------------H-CCCCCCC---CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 985089999999998--------------3-7889851---168999769999866999999999999864446999999
Q ss_pred HHHHCCCEEEECCCEE
Q ss_conf 9997498199847549
Q gi|254780918|r 537 RILEAGYRNVWTPHAD 552 (623)
Q Consensus 537 R~~~~G~r~v~~P~a~ 552 (623)
=++++||.+...|+-.
T Consensus 336 LmrRAGw~V~~~p~l~ 351 (663)
T PRK05454 336 LMRRAGWGVWLAPDLP 351 (663)
T ss_pred HHHHCCCEEEEECCCC
T ss_conf 9986598699702799
No 131
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=97.33 E-value=0.0069 Score=35.97 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=88.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH----HHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
Q ss_conf 78999747589888999999999----82889974899987757806799999998875798899980888856489999
Q gi|254780918|r 68 LISVIMPVYKIKKEWLEMAIESV----RSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNS 143 (623)
Q Consensus 68 ~iSIiip~yn~~~~~L~~~i~Si----~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~ 143 (623)
++.||||-.|. ++.|...+.-+ ..|- -+++|+|+.-..+. +-|. +.-.|.
T Consensus 3 k~aIIIPyRdR-~~hL~~fl~~l~~~L~~q~-~~y~I~vieQ~~~~----------------------~FNR--g~L~Ni 56 (219)
T cd00899 3 KVAIIVPFRNR-FEHLLIFLPHLHPFLQRQQ-LDYRIFVIEQVGNF----------------------RFNR--AKLLNV 56 (219)
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHHHCC-CCEEEEEEEECCCC----------------------CCCH--HHHHHH
T ss_conf 59999954997-9999999999999998658-87699999964885----------------------5006--666729
Q ss_pred HHHHC----CCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCHHHHCCCCCCCHH
Q ss_conf 99965----99899997698752732079999998732475542022206758983654225667896674147854314
Q gi|254780918|r 144 AAQLA----TSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYDFNPELFHVHNMITHL 219 (623)
Q Consensus 144 ~l~~a----~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~~~~~~l~s~nyi~~~ 219 (623)
|...| .-++++|-|-|-+...+.+ .|+-. ..-....+. -..|++. +--..|+|..
T Consensus 57 Gf~ea~~~~~~d~~ifHDVDllP~~~~~---------------~Y~~~----~~p~Hl~~~-~~~~~~~-l~y~~~fGGV 115 (219)
T cd00899 57 GFLEALKDGDWDCFIFHDVDLLPENDRN---------------LYGCE----EGPRHLSVP-LDKFHYK-LPYKTYFGGV 115 (219)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCCC---------------CCCCC----CCCEEEEEE-ECEECCC-CCCCCEEEEE
T ss_conf 9999974369888999326634466676---------------32589----975271323-1103441-2787623049
Q ss_pred HHHHHHHHHHHCCCCCCCC--CCCCCHHHHHHHHCCCCCCEEECCCCEEEEEE
Q ss_conf 5768999997188789877--30274136788642487522006842279953
Q gi|254780918|r 220 GVYRTETFKKIGGFREKFE--GAQDYDLVLRFLENIDLSQIIHIPRVLYHWRM 270 (623)
Q Consensus 220 ~~~rr~~~~~iGgf~~~~~--~~~D~Dl~lR~~~~~~~~~i~hip~vLy~~R~ 270 (623)
+++.++-|+++.||.-.|= |.||-||..|+.... -+|.+-+.....|.+
T Consensus 116 ~~~~~~~f~~vNGfsN~yWGWGgEDDdl~~R~~~~~--l~i~R~~~~~~ry~~ 166 (219)
T cd00899 116 LALTREQFRKVNGFSNAYWGWGGEDDDLYNRIKAAG--LKITRPSGDTGRYKM 166 (219)
T ss_pred EEECHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCC--CEEEECCCCCCCEEE
T ss_conf 997799998728998334688855269999998779--759807976564556
No 132
>pfam02709 Galactosyl_T_2 Galactosyltransferase. This is a family of galactosyltransferases from a wide range of Metazoa with three related galactosyltransferases activitys; all three of which are possessed by one sequence in some cases. EC:2.4.1.90, N-acetyllactosamine synthase; EC:2.4.1.38, Beta-N-acetylglucosaminyl-glycopeptide beta-1,4- galactosyltransferase; and EC:2.4.1.22 Lactose synthase. Note that N-acetyllactosamine synthase is a component of Lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin EC:2.4.1.90 is the catalysed reaction.
Probab=97.27 E-value=0.0034 Score=37.89 Aligned_cols=156 Identities=17% Similarity=0.186 Sum_probs=91.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHH----HHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
Q ss_conf 7899974758988899999999----982889974899987757806799999998875798899980888856489999
Q gi|254780918|r 68 LISVIMPVYKIKKEWLEMAIES----VRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNS 143 (623)
Q Consensus 68 ~iSIiip~yn~~~~~L~~~i~S----i~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~ 143 (623)
++.||||-.|. ++.|...|.- +..|- -+++|+|+.-.... .-| -+.-.|.
T Consensus 50 kvAIIVPyRdR-~~hL~~fl~~l~p~L~rQ~-i~y~IfVieQ~~~~----------------------~FN--Rg~L~Nv 103 (271)
T pfam02709 50 KVAVIIPFRNR-EEHLRYLLYHLHPFLQRQR-LDYGIYVINQTGND----------------------TFN--RAKLLNV 103 (271)
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHHHCC-CCEEEEEEEEECCC----------------------CCC--HHHHHHH
T ss_conf 37999735998-9999999999999998638-97599999960896----------------------400--8889989
Q ss_pred HHHHC----CCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCHHHHCCCCCCCHH
Q ss_conf 99965----99899997698752732079999998732475542022206758983654225667896674147854314
Q gi|254780918|r 144 AAQLA----TSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYDFNPELFHVHNMITHL 219 (623)
Q Consensus 144 ~l~~a----~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~~~~~~l~s~nyi~~~ 219 (623)
|+..| .-++++|-|-|-+..-+. ..|+-. +....... ..+.|+.. +.-..|+|..
T Consensus 104 Gf~ea~k~~~~dc~iFHDVDllP~~d~---------------~~Y~c~----~~P~Hl~~-~~~~~~~~-l~Y~~~fGGV 162 (271)
T pfam02709 104 GFLEALKLGVWDCFVFHDVDLLPENDR---------------NPYKCP----PQPRHLAV-AMDKYGYR-LPYKEYFGGV 162 (271)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCC---------------CCCCCC----CCCCEEEE-ECCCCCCC-CCCCCEEEEE
T ss_conf 999986327967899943664325667---------------644699----98617689-63434765-7878887889
Q ss_pred HHHHHHHHHHHCCCCCCCC--CCCCCHHHHHHHHCCCCCCEEECCCCEEEEEECC
Q ss_conf 5768999997188789877--3027413678864248752200684227995338
Q gi|254780918|r 220 GVYRTETFKKIGGFREKFE--GAQDYDLVLRFLENIDLSQIIHIPRVLYHWRMHD 272 (623)
Q Consensus 220 ~~~rr~~~~~iGgf~~~~~--~~~D~Dl~lR~~~~~~~~~i~hip~vLy~~R~~~ 272 (623)
+++.++-|+++.||.-.|= |.+|-||..|+.... -+|.+-+.-...|++..
T Consensus 163 ~~~t~~~f~~vNGfsN~yWGWGgEDDDl~~Ri~~~g--l~i~Rp~~~~grY~ml~ 215 (271)
T pfam02709 163 SALTKEQFRKINGFPNNYWGWGGEDDDLYNRIILAG--MKISRPDPSTGKYKMIK 215 (271)
T ss_pred EEECHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCC--CEEECCCCCCCCEEEEE
T ss_conf 985699997718977564888864078999999859--80784787620179762
No 133
>KOG3917 consensus
Probab=97.19 E-value=0.00095 Score=41.26 Aligned_cols=146 Identities=19% Similarity=0.287 Sum_probs=90.1
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCC--CEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 16999953774556999998764207975--1579971489981689999999863088827997578887338898987
Q gi|254780918|r 325 LVSIIIPTYNHHHLLKICLESIYHKTTYS--SFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNA 402 (623)
Q Consensus 325 ~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~--~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g 402 (623)
+..|+||.+++.+.|...+--..+...-. .-.|.|++ . .| .-.||.|...|.|
T Consensus 75 klavlVPfRdRfEELl~FvPHM~~FL~rq~v~HHI~vlN-Q-vD-----------------------~fRFNRAsLINVG 129 (310)
T KOG3917 75 KLAVLVPFRDRFEELLEFVPHMSKFLHRQNVSHHILVLN-Q-VD-----------------------PFRFNRASLINVG 129 (310)
T ss_pred EEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE-C-CC-----------------------CCEECHHHHEECC
T ss_conf 178885048889999986578999875458522799961-3-57-----------------------5221233514402
Q ss_pred HHHCC--CCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCC
Q ss_conf 86148--9747440588278281688998877428981699537664676756778704413254067865664322565
Q gi|254780918|r 403 TLHAK--GQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHK 480 (623)
Q Consensus 403 ~~~a~--geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~ 480 (623)
...|. .||++.-|-|..++.|+ |.|. .| |.+|-. +-.
T Consensus 130 f~eas~~~DYiaMhDVDLLPlN~e--------------------l~Y~-----fP--------------~~~gp~--Hia 168 (310)
T KOG3917 130 FNEASRLCDYIAMHDVDLLPLNPE--------------------LPYD-----FP--------------GIGGPR--HIA 168 (310)
T ss_pred HHHHCCHHCEEEECCCCCCCCCCC--------------------CCCC-----CC--------------CCCCCC--CCC
T ss_conf 222022001222224441137977--------------------7878-----98--------------667741--015
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEE
Q ss_conf 55576442222334444411101102043888898717999768763231688999999749819
Q gi|254780918|r 481 ARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRN 545 (623)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~ 545 (623)
.+...|.|.... -.|..+|++++.|.++.|+...|...+.||-+|-+|++.+|...
T Consensus 169 sP~lHPkYHY~~---------fvGGILll~~~hyk~~NGMSN~yWGWGlEDDEFy~RI~dagLql 224 (310)
T KOG3917 169 SPQLHPKYHYEK---------FVGGILLLTLKHYKKLNGMSNKYWGWGLEDDEFYLRIIDAGLQL 224 (310)
T ss_pred CCCCCCHHHHHH---------HCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCHHHHEECCCCCEE
T ss_conf 865471355654---------20115776698888733854012256766442431110266157
No 134
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase; InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm.
Probab=96.55 E-value=0.036 Score=31.55 Aligned_cols=100 Identities=20% Similarity=0.280 Sum_probs=59.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH------HHHHHHHHHHH-CCCEEEEECCCCCCHHHH
Q ss_conf 78999747589888999999999828899748999877578067------99999998875-798899980888856489
Q gi|254780918|r 68 LISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIE------TVSLLKKYANM-DSRIKVVFRAKNGHISAA 140 (623)
Q Consensus 68 ~iSIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~------~~~~l~~~~~~-d~ri~~~~~~~n~g~~~a 140 (623)
...||||+-|.+.. +|+.|+.-. |+--+|||-.+|+-.. -.++++.|... +..|-+++ +..=+++.|
T Consensus 57 ~~aivvP~knE~L~----llegVL~~I-P~e~li~vvSnS~Re~vdRF~~EveL~r~f~~~~~~~i~i~h-Q~DP~LA~A 130 (394)
T TIGR02460 57 KTAIVVPVKNEKLK----LLEGVLSGI-PHECLIIVVSNSKREPVDRFKMEVELVREFSRLTERKILIIH-QKDPALAEA 130 (394)
T ss_pred CCEEEEECCCCCHH----HHHHHHHCC-CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE-CCCHHHHHH
T ss_conf 85788711147414----331134227-883768888667489985667899999999986189518997-288789999
Q ss_pred H-----------------------HHHH--HHC-CCCEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 9-----------------------9999--965-99899997698752732079999998
Q gi|254780918|r 141 S-----------------------NSAA--QLA-TSEWLALLDHDDLLHPTALYYVADAI 174 (623)
Q Consensus 141 ~-----------------------N~~l--~~a-~Ge~i~~lD~DD~l~p~~L~~~~~~l 174 (623)
+ =.|+ +.+ ..|||.|+|+|..+.=-.+ +.++..
T Consensus 131 l~~~~y~~~~~~~G~vRsGKaEGMllGl~lA~~~G~~YvGFvDsDNY~PGAv~-EYv~~Y 189 (394)
T TIGR02460 131 LKEVGYESILGESGRVRSGKAEGMLLGLLLAAALGAEYVGFVDSDNYFPGAVN-EYVKIY 189 (394)
T ss_pred HHCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHH-HHHHHH
T ss_conf 73388867557988564350438999999999863870036740678774256-889999
No 135
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.50 E-value=0.055 Score=30.43 Aligned_cols=203 Identities=16% Similarity=0.169 Sum_probs=102.3
Q ss_pred CEEEEEECCCCH-----HHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHH-----HHHHHHHHHCC--CCCEEEEECCCC
Q ss_conf 169999537745-----569999987642079751579971489981689-----99999986308--882799757888
Q gi|254780918|r 325 LVSIIIPTYNHH-----HLLKICLESIYHKTTYSSFEVIIIDNLSDDSKT-----FLYLQKIQKKY--PNLRVITDNTHP 392 (623)
Q Consensus 325 ~VSIIIp~~n~~-----~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t-----~~~l~~~~~~~--~~~~~i~~~~~~ 392 (623)
+-.|++|+||+- .-|+..-+|+.+.-.-.+|.+.|.-| |.|++. .+|.+-..+.. .++.+-+...+
T Consensus 145 rTAilmPiynEd~~rVfAgLrA~~eSla~Tg~~~~FD~FVLSD-s~dpdialAEq~a~~~l~~e~~g~~~ifYRrRr~n- 222 (736)
T COG2943 145 RTAILMPIYNEDVNRVFAGLRATYESLAATGHAEHFDFFVLSD-SRDPDIALAEQKAWAELCRELGGEGNIFYRRRRRN- 222 (736)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHH-
T ss_conf 2157730346678999998999999998617612002899748-99822566689999999998367772664067555-
Q ss_pred CCHHHHHHHH--HHH--CCCCEEEEECCCCEEECHHHHHHHHHHHC-CCCEEEEE--EEEECCCCCCCCCCCEEEECCEE
Q ss_conf 7338898987--861--48974744058827828168899887742-89816995--37664676756778704413254
Q gi|254780918|r 393 FNYSRINNNA--TLH--AKGQYFCFLNNDTEVINGQWLSEMMGIAS-QPQVGAVG--ARLWYRRKKLWKRSKRLQHGGVI 465 (623)
Q Consensus 393 ~n~s~~~N~g--~~~--a~geyilfLn~D~~v~~~~wL~~Ll~~~~-~~~vG~Vg--~~ll~~~~~~~~~d~~iqhaG~v 465 (623)
-+..++ |.+ .+. ..-+|.+.||.|- |.+++++-+|+...+ +|++|+.. |++...+ ... -...|.|--+
T Consensus 223 ~~RKaG-NIaDfcrRwG~~Y~~MlVLDADS-vMtgd~lvrLv~~ME~~P~aGlIQt~P~~~gg~--TL~-AR~qQFatrv 297 (736)
T COG2943 223 VKRKAG-NIADFCRRWGSAYSYMLVLDADS-VMTGDCLVRLVRLMEANPDAGLIQTSPKASGGD--TLY-ARCQQFATRV 297 (736)
T ss_pred HCCCCC-CHHHHHHHHCCCCCEEEEEECCC-CCCHHHHHHHHHHHHHCCCCCEEECCHHHCCCC--HHH-HHHHHHHHHH
T ss_conf 223346-78899987376532589960543-357278999999985299976032150332865--299-9999989887
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCH----HHHHHHCCHHHH--HHHHH
Q ss_conf 067865664322565555764422223344444111011020438888987179997----687632316889--99999
Q gi|254780918|r 466 MGINNIAGHKNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDE----KNTPVVFSDIDL--CLRIL 539 (623)
Q Consensus 466 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE----~~~~~~~eDvDl--clR~~ 539 (623)
.|.--.+|-.+... -..++- |..-.||.+.|-+--|+-. ..|...----|| .--+|
T Consensus 298 YGpl~~~GLawW~~---------------~Es~yW---GHNAIIRt~aF~~hcgLp~LpG~~pFgG~ilSHDfvEAALmR 359 (736)
T COG2943 298 YGPLFTAGLAWWQL---------------GESHYW---GHNAIIRTKAFIEHCGLPPLPGRGPFGGHILSHDFVEAALMR 359 (736)
T ss_pred HCHHHHHHHHHHHC---------------CCCCCC---CCCCEEECHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 13377655678725---------------655544---442102304668744899999999977500140889999986
Q ss_pred HCCCEEEECCCEE
Q ss_conf 7498199847549
Q gi|254780918|r 540 EAGYRNVWTPHAD 552 (623)
Q Consensus 540 ~~G~r~v~~P~a~ 552 (623)
++||-+...|+-.
T Consensus 360 RaGW~v~ia~dL~ 372 (736)
T COG2943 360 RAGWGVWIAYDLD 372 (736)
T ss_pred HCCCEEEEECCCC
T ss_conf 3575488850689
No 136
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=96.45 E-value=0.026 Score=32.49 Aligned_cols=115 Identities=16% Similarity=0.196 Sum_probs=65.7
Q ss_pred CCEEEEEECCCCH---HHHHHHHHHHHHCCCCCCEEEEEECCCC-CCHHHHHHHHHHHHCCCCCEEE-EECCCCCCH---
Q ss_conf 8169999537745---5699999876420797515799714899-8168999999986308882799-757888733---
Q gi|254780918|r 324 PLVSIIIPTYNHH---HLLKICLESIYHKTTYSSFEVIIIDNLS-DDSKTFLYLQKIQKKYPNLRVI-TDNTHPFNY--- 395 (623)
Q Consensus 324 P~VSIIIp~~n~~---~~l~~cl~Sl~~~t~y~~~EiivVdn~S-~d~~t~~~l~~~~~~~~~~~~i-~~~~~~~n~--- 395 (623)
|.|-+|.|||.+. ..|.+.-.+|. .. |++-.|||+++. ..+++.++|++-.- ..+.+ ...+..++.
T Consensus 1 p~i~vVTPTy~R~~Q~a~LtRLa~TL~-lV--p~l~WIVVEd~~~~t~~v~~lL~~sgl---~y~HL~~~~~~~~~~~~~ 74 (223)
T cd00218 1 PTIYVVTPTYARPVQKAELTRLAHTLR-LV--PPLHWIVVEDSEEKTPLVAELLRRSGL---MYTHLNAKTPSDPTWLKP 74 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHH-CC--CCCEEEEEECCCCCCHHHHHHHHHCCC---CEEEEECCCCCCCCCCCC
T ss_conf 959998888876146799999988986-28--981699996798889899999997499---649863488888888775
Q ss_pred --HHHHHHHHHHCC-------CCEEEEECCCCEEECHHHHHHHHHH--HCCCCEEEEEEEE
Q ss_conf --889898786148-------9747440588278281688998877--4289816995376
Q gi|254780918|r 396 --SRINNNATLHAK-------GQYFCFLNNDTEVINGQWLSEMMGI--ASQPQVGAVGARL 445 (623)
Q Consensus 396 --s~~~N~g~~~a~-------geyilfLn~D~~v~~~~wL~~Ll~~--~~~~~vG~Vg~~l 445 (623)
....|.|++..+ .-++.|.|+|= +.+-.-+++|-.. +.-=-||.||+..
T Consensus 75 rg~~qRn~aL~~ir~~~~~~~~GVVyFaDDdN-tYsl~lF~emR~~k~vg~WPVglvg~~~ 134 (223)
T cd00218 75 RGVEQRNLALRWIREHLSAKLDGVVYFADDDN-TYDLELFEEMRKIKRVGVWPVGLVGGLR 134 (223)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEECCCCC-EECHHHHHHHHCCEEEEEEEEEEECCCE
T ss_conf 11899999999999667667876999756997-0048999876542078798765552622
No 137
>pfam11316 DUF3118 Protein of unknown function (DUF3118). This bacterial family of proteins has no known function.
Probab=96.42 E-value=0.044 Score=31.02 Aligned_cols=92 Identities=15% Similarity=0.232 Sum_probs=61.2
Q ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH---HCCCCEE-E-EE
Q ss_conf 99998764207975157997148998168999999986308882799757888733889898786---1489747-4-40
Q gi|254780918|r 340 KICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATL---HAKGQYF-C-FL 414 (623)
Q Consensus 340 ~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~---~a~geyi-l-fL 414 (623)
.-||-||..||+ ++|+.+|+-+.+....-.+-|+.+.+..+.++++...+.+ ...++-.++. ...++++ - -|
T Consensus 45 ~~~Lpsl~~Qtd-~dF~~lv~~~~~~P~~~r~RL~~L~a~~pq~~i~~~~p~~--hr~~~~~~i~~~~~~~~~~~lqfRl 121 (235)
T pfam11316 45 TICLPSLAAQTD-PDFTLLVLIGDDMPEPYRDRLEDLTADLPQFRIVFRPPGP--HREAMREAINAARGDGTDPVLQFRL 121 (235)
T ss_pred HHHHHHHHHCCC-CCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCC--HHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 764027764668-9924999956868889999999986479952899618842--8999999998641689982588660
Q ss_pred CCCCEEECHHHHHHHHHHHCC
Q ss_conf 588278281688998877428
Q gi|254780918|r 415 NNDTEVINGQWLSEMMGIASQ 435 (623)
Q Consensus 415 n~D~~v~~~~wL~~Ll~~~~~ 435 (623)
|||- .++-|.++++-..+.+
T Consensus 122 DDDD-Avs~DFVarlR~~a~~ 141 (235)
T pfam11316 122 DDDD-AVSVDFVARLRRAAAD 141 (235)
T ss_pred CCCC-CHHHHHHHHHHHHHHH
T ss_conf 6863-0258999999999975
No 138
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=96.33 E-value=0.04 Score=31.29 Aligned_cols=208 Identities=15% Similarity=0.100 Sum_probs=94.8
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 88881699995377455699999876420797515799714899816899999998630888279975788873388989
Q gi|254780918|r 321 NPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINN 400 (623)
Q Consensus 321 ~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N 400 (623)
-++|++-| .+..++...|+.+.. .... ||+||.+.-..+...+++..-......+..+.+ +.+.|-+.+..
T Consensus 21 ~PKpLlpi-----~~kPli~~~l~~l~~-~Gi~--~i~iv~~~~~~~~~~~~~~~~~~~~~~i~y~~e-~~~~Gt~~al~ 91 (240)
T cd02538 21 VSKQLLPV-----YDKPMIYYPLSTLML-AGIR--EILIISTPEDLPLFKELLGDGSDLGIRITYAVQ-PKPGGLAQAFI 91 (240)
T ss_pred CCCCCCEE-----CCEEEHHHHHHHHHH-CCCC--CCEEECCHHHHHHHHHHHHCCCCCCEEEEEEEE-ECCCCCCHHHH
T ss_conf 87432779-----999718999999998-5996--231002342699999997447637527999998-62686313788
Q ss_pred HHHHHCCCCEEEEECCCCEEECHHHHHHHHHHHC-CCCEEEEEEEEECCCCCCCCCCCEEEECCEEE-CCCCCCCCCCCC
Q ss_conf 8786148974744058827828168899887742-89816995376646767567787044132540-678656643225
Q gi|254780918|r 401 NATLHAKGQYFCFLNNDTEVINGQWLSEMMGIAS-QPQVGAVGARLWYRRKKLWKRSKRLQHGGVIM-GINNIAGHKNKH 478 (623)
Q Consensus 401 ~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~-~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~-g~~~~~~~~~~~ 478 (623)
.+.....+|-++++++|..+ ...-+..|+.+.. ++....++..-. ++. +..|++. .-++. ....
T Consensus 92 ~a~~~~~~~~~~v~~gD~i~-~~~~~~~~l~~~~~~~~~~ti~~~~v--------~~~--~~yGvv~~d~~~~---v~~~ 157 (240)
T cd02538 92 IGEEFIGDDPVCLILGDNIF-YGQGLSPILQRAAAQKEGATVFGYEV--------NDP--ERYGVVEFDENGR---VLSI 157 (240)
T ss_pred HHHHHCCCCCEEEECCCCEE-CCCCHHHHHHHHHHCCCCCEEEEEEE--------CCC--CCCCCCCCCCCCC---EEEE
T ss_conf 88876289873444387401-06568999999996668847877772--------361--1367231147885---7898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEE-ECCCEEEEEEC
Q ss_conf 65555764422223344444111011020438888987179997687632316889999997498199-84754999517
Q gi|254780918|r 479 HKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNV-WTPHADLYHDE 557 (623)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v-~~P~a~v~H~e 557 (623)
. ..|... ..++ +.+| +.++++++|+.+-....... ..++-.|+.-.+.+.|...+ +.+..-.|
T Consensus 158 ~----EKP~~~------~s~~-~~~G-iYi~~~~i~~~i~~~~~~~~-ge~~i~d~~~~~i~~g~~~~~~~~~~~~W--- 221 (240)
T cd02538 158 E----EKPKKP------KSNY-AVTG-LYFYDNDVFEIAKQLKPSAR-GELEITDVNNEYLEKGKLSVELLGRGFAW--- 221 (240)
T ss_pred E----ECCCCC------CCCE-EEEE-EEEECHHHHHHHHHCCCCCC-CEEEHHHHHHHHHHCCCCEEEEECCCCEE---
T ss_conf 8----899999------9887-9999-99989899999985899999-90758899999998599739996899808---
Q ss_pred CCCCCCCCCCHHHHH
Q ss_conf 733677668999999
Q gi|254780918|r 558 SRTRKYDHEDPAKMI 572 (623)
Q Consensus 558 s~srg~~~~~~~k~~ 572 (623)
.|.-+|+...
T Consensus 222 -----~DiGtpe~~~ 231 (240)
T cd02538 222 -----LDTGTHESLL 231 (240)
T ss_pred -----EECCCHHHHH
T ss_conf -----9799999999
No 139
>pfam03452 Anp1 Anp1. The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins co-localize within the cis Golgi, and that they are physically associated in two distinct complexes.
Probab=96.25 E-value=0.077 Score=29.54 Aligned_cols=31 Identities=19% Similarity=0.377 Sum_probs=18.2
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 88169999537745569999987642079751
Q gi|254780918|r 323 PPLVSIIIPTYNHHHLLKICLESIYHKTTYSS 354 (623)
Q Consensus 323 ~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~ 354 (623)
.+.|=|+.|.+|....+....+.|... +||+
T Consensus 25 ~e~VLiltPl~~a~~f~~~y~~~l~~L-tYph 55 (270)
T pfam03452 25 KERVLILTPLRDAARFLPLYFDNLLKL-TYPH 55 (270)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHC-CCCH
T ss_conf 866999814066789999999888727-8973
No 140
>pfam09488 Osmo_MPGsynth Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth). This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP) EC:2.4.1.217, comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=95.96 E-value=0.11 Score=28.69 Aligned_cols=101 Identities=16% Similarity=0.259 Sum_probs=56.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHH-----HHHHHHHHHHHHC-CCEEEEECCCCCCHHHHH
Q ss_conf 7899974758988899999999982889974899987757806-----7999999988757-988999808888564899
Q gi|254780918|r 68 LISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDI-----ETVSLLKKYANMD-SRIKVVFRAKNGHISAAS 141 (623)
Q Consensus 68 ~iSIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~-----~~~~~l~~~~~~d-~ri~~~~~~~n~g~~~a~ 141 (623)
...||||+-|.+.+ .|+-|+.-....--+|||-+++..+ ...+.++.+...- ..+.+ .++++-|++.|.
T Consensus 51 ~mAIVVP~KdE~l~----lleGVL~gIPh~C~iIvVSNS~r~~~d~fk~E~d~l~~f~~~t~r~~i~-vHQkDp~la~Af 125 (381)
T pfam09488 51 QMAIVVPVKDEDLK----LLEGVLSGIPHDCLVIVVSNSKREPVDRYKMEVDLLRHFSRLTRRPIII-VHQKDPGLAEAF 125 (381)
T ss_pred CCEEEEECCCCCHH----HHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEE-EECCCHHHHHHH
T ss_conf 71899965886267----7755772499888699996798887037899999999997651375689-973798999999
Q ss_pred HH-----------------------HHH--HC-CCCEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 99-----------------------999--65-99899997698752732079999998
Q gi|254780918|r 142 NS-----------------------AAQ--LA-TSEWLALLDHDDLLHPTALYYVADAI 174 (623)
Q Consensus 142 N~-----------------------~l~--~a-~Ge~i~~lD~DD~l~p~~L~~~~~~l 174 (623)
+. |+- .+ .-+||.|+|+|..+. .+..+.++..
T Consensus 126 ~~aGy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyiP-GaV~EYvk~y 183 (381)
T pfam09488 126 KEAGYPDLLGEDGLVRNGKGEGMILGILLAKALGRRYVGFIDADNYVP-GAVNEYVKIY 183 (381)
T ss_pred HHCCCHHHHCCCCCEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-CHHHHHHHHH
T ss_conf 874964550888846458513889999999861886586751566777-1499999998
No 141
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=95.92 E-value=0.11 Score=28.58 Aligned_cols=153 Identities=18% Similarity=0.143 Sum_probs=89.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
Q ss_conf 45897899974758988899999999982889974899987757806799999998875798899980888856489999
Q gi|254780918|r 64 QNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNS 143 (623)
Q Consensus 64 ~~~P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~ 143 (623)
+..|++ +.|+-| ...|+-.|+++...-.. ++++|-.-..+ .+++.+ .+..|.++.+++..|.+.|...
T Consensus 21 s~~PKv--L~pi~g--kPml~hvi~~l~~~g~~--~ivvVvg~~~e-~i~~~~-----~~~~i~~v~Q~eqlGTghAV~~ 88 (456)
T PRK09451 21 SDLPKV--LHTLAG--KPMVQHVIDAANELGAA--HVHLVYGHGGD-LLKQTL-----KDEPLNWVLQAEQLGTGHAMQQ 88 (456)
T ss_pred CCCCHH--HHEECC--HHHHHHHHHHHHHCCCC--EEEEEECCCHH-HHHHHH-----CCCCCEEEEECCCCCCHHHHHH
T ss_conf 997957--504489--86999999999876998--09999699879-999874-----4588449995888972999999
Q ss_pred HHHHCCC-CEEEEECCCC-CCCCCHHHHHHHHHHHCCCCCCCCC---C---C-EEECCCCCEEEECCCCCCCHHHHCCCC
Q ss_conf 9996599-8999976987-5273207999999873247554202---2---2-067589836542256678966741478
Q gi|254780918|r 144 AAQLATS-EWLALLDHDD-LLHPTALYYVADAINNNPNAEIIYS---D---E-DKINENQIRSGPYFKYDFNPELFHVHN 214 (623)
Q Consensus 144 ~l~~a~G-e~i~~lD~DD-~l~p~~L~~~~~~l~~~p~~~~iYs---D---e-~~i~~~g~~~~p~fkp~~~~~~l~s~n 214 (623)
|...-+. +.++.|..|. ++.++.|..+++.- ...++.++-. | . ..+.++|......-++|.+++-....-
T Consensus 89 A~~~l~~~~~vLVl~GD~PLi~~~tl~~l~~~~-~~~~~~llt~~~~dP~~YGrIi~~~g~v~~IVE~kda~~~e~~i~e 167 (456)
T PRK09451 89 AAPFFADDEDILMLYGDVPLISVETLQRLRDAK-PQGGIGLLTVKLDNPTGYGRITRENGKVVGIVEHKDATDEQRQIQE 167 (456)
T ss_pred HHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHC-CCCCEEEEEEECCCCCCCEEEEECCCCEEEEEECCCCCHHHHCCCE
T ss_conf 888606688589995980156999999998625-1388599999768965464899438957999982679845521112
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 543145768999997
Q gi|254780918|r 215 MITHLGVYRTETFKK 229 (623)
Q Consensus 215 yi~~~~~~rr~~~~~ 229 (623)
.-....+|+.+.+.+
T Consensus 168 iNaGIy~f~~~~l~~ 182 (456)
T PRK09451 168 INTGILVANGADLKR 182 (456)
T ss_pred ECCEEEEECHHHHHH
T ss_conf 202489957999999
No 142
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=95.88 E-value=0.12 Score=28.46 Aligned_cols=190 Identities=12% Similarity=0.095 Sum_probs=97.7
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 88816999953774556999998764207975157997148998168999999986308882799757888733889898
Q gi|254780918|r 322 PPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNN 401 (623)
Q Consensus 322 ~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~ 401 (623)
..|+|-+ |. -+..+|+..|+++.+. . +. +|+||-+...| ...+++. . ..+.++.+... .|-+.+...
T Consensus 22 ~~PKvL~--pi-~gkPml~hvi~~l~~~-g-~~-~ivvVvg~~~e-~i~~~~~----~-~~i~~v~Q~eq-lGTghAV~~ 88 (456)
T PRK09451 22 DLPKVLH--TL-AGKPMVQHVIDAANEL-G-AA-HVHLVYGHGGD-LLKQTLK----D-EPLNWVLQAEQ-LGTGHAMQQ 88 (456)
T ss_pred CCCHHHH--EE-CCHHHHHHHHHHHHHC-C-CC-EEEEEECCCHH-HHHHHHC----C-CCCEEEEECCC-CCCHHHHHH
T ss_conf 9795750--44-8986999999999876-9-98-09999699879-9998744----5-88449995888-972999999
Q ss_pred HHHHCC-CCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCC
Q ss_conf 786148-9747440588278281688998877428981699537664676756778704413254067865664322565
Q gi|254780918|r 402 ATLHAK-GQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHK 480 (623)
Q Consensus 402 g~~~a~-geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~ 480 (623)
+....+ .+.++.||.|+-+++++-|+.|++.....++++++.++-. |.+ .|.++..+|.. .....
T Consensus 89 A~~~l~~~~~vLVl~GD~PLi~~~tl~~l~~~~~~~~~~llt~~~~d-------P~~----YGrIi~~~g~v---~~IVE 154 (456)
T PRK09451 89 AAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQGGIGLLTVKLDN-------PTG----YGRITRENGKV---VGIVE 154 (456)
T ss_pred HHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEEECCC-------CCC----CEEEEECCCCE---EEEEE
T ss_conf 88860668858999598015699999999862513885999997689-------654----64899438957---99998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHH-HCCCCHHHHHHHCCHHHHHHHHHHCCCEEE
Q ss_conf 555764422223344444111011020438888987-179997687632316889999997498199
Q gi|254780918|r 481 ARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMH-VGGFDEKNTPVVFSDIDLCLRILEAGYRNV 546 (623)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~-iGGfDE~~~~~~~eDvDlclR~~~~G~r~v 546 (623)
.....+. .....-+.+.+++++.+.|.+ +...........|.-+|+---+.+.|+.+-
T Consensus 155 ~kda~~~--------e~~i~eiNaGIy~f~~~~l~~~L~~i~~~n~~gEyyLTDii~~~~~~g~~v~ 213 (456)
T PRK09451 155 HKDATDE--------QRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIALAYQEGREIV 213 (456)
T ss_pred CCCCCHH--------HHCCCEECCEEEEECHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHCCCEEE
T ss_conf 2679845--------5211122024899579999998875067554562563056788874695799
No 143
>pfam05679 CHGN Chondroitin N-acetylgalactosaminyltransferase.
Probab=95.64 E-value=0.14 Score=27.87 Aligned_cols=13 Identities=31% Similarity=0.767 Sum_probs=5.1
Q ss_pred HHHHCCCEEEECC
Q ss_conf 9997498199847
Q gi|254780918|r 537 RILEAGYRNVWTP 549 (623)
Q Consensus 537 R~~~~G~r~v~~P 549 (623)
|+-+-|.+.+|.|
T Consensus 457 Ra~ep~L~h~yh~ 469 (498)
T pfam05679 457 RAVEPGLVHIYHP 469 (498)
T ss_pred ECCCCCEEEEECC
T ss_conf 7789985887046
No 144
>KOG2571 consensus
Probab=95.62 E-value=0.15 Score=27.84 Aligned_cols=184 Identities=17% Similarity=0.203 Sum_probs=93.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHC-----------CCC-----CEEEEEECCCCCHH----HHHHHHHHHHHH-
Q ss_conf 458978999747589888999999999828-----------899-----74899987757806----799999998875-
Q gi|254780918|r 64 QNKPLISVIMPVYKIKKEWLEMAIESVRSQ-----------IYS-----HWELCIAEDCSGDI----ETVSLLKKYANM- 122 (623)
Q Consensus 64 ~~~P~iSIiip~yn~~~~~L~~~i~Si~~Q-----------ty~-----~~EliivdD~S~d~----~~~~~l~~~~~~- 122 (623)
.+.+.|-|++..||.++.-+.+++.|+..+ .|+ ..+.+++-|+...- ++-+.++.+...
T Consensus 290 ~r~~~v~~Citmy~Ed~~~m~~~l~sI~r~~~~c~r~~s~~~~~~~~~~~v~~~i~~Dg~~~v~~~~~vl~~~~~~g~y~ 369 (862)
T KOG2571 290 DRKTQVALCITMYQEDGNSMARTLPSILRNDKLCLRSASRVWGPDDKVKKVVVGIVFDDAYMVDIFPEVLAYLAQIGVYQ 369 (862)
T ss_pred CCCCEEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCHHHHHCCHHHHHHHHHHCEEE
T ss_conf 76637999820104641667664499984068877652213489875799998887456466540315656566421320
Q ss_pred ----------CCCEEEEE---CCCCCC-----------------------------HHHHHHHHHHHCC--CCEEEEECC
Q ss_conf ----------79889998---088885-----------------------------6489999999659--989999769
Q gi|254780918|r 123 ----------DSRIKVVF---RAKNGH-----------------------------ISAASNSAAQLAT--SEWLALLDH 158 (623)
Q Consensus 123 ----------d~ri~~~~---~~~n~g-----------------------------~~~a~N~~l~~a~--Ge~i~~lD~ 158 (623)
..++..+. .+-++. .-...+....... =+||..+|+
T Consensus 370 d~~ak~~~n~k~~~~~i~k~~t~~~~~~~~~~~~r~~v~i~m~~~~Ki~~~krw~~~r~~~y~~~~~L~~~v~~il~vD~ 449 (862)
T KOG2571 370 DGSAKEVHNGKERIAHIYKGTTPYEGSLAENRPGRDSVPILLKFCLKIRHKKRWNQHRWVMYTAFKALMPSVDYILVVDA 449 (862)
T ss_pred CCCHHHHCCCCCEEECCEECCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 23003320665301100223675555014468998704202456788998766778999999999984676238999638
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCHHHHCCCC-------------C-CCHHHHHHH
Q ss_conf 87527320799999987324755420222067589836542256678966741478-------------5-431457689
Q gi|254780918|r 159 DDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYDFNPELFHVHN-------------M-ITHLGVYRT 224 (623)
Q Consensus 159 DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~~~~~~l~s~n-------------y-i~~~~~~rr 224 (623)
|..+.|+++.++++.+.++|+++.+-+ +|...+...-... =+-|+..+++ + .|-+.+||-
T Consensus 450 dT~~~P~ai~~lv~~f~~dp~VggaCG---~I~~~~~~w~v~~---Q~FEY~Ish~l~Ka~ESvFG~VsclPGcfs~yR~ 523 (862)
T KOG2571 450 DTRLDPDALYHLVKVFDEDPQVGGACG---RILNKGGSWVVAY---QNFEYAISHNLQKATESVFGCVSCLPGCFSLYRA 523 (862)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCEECC---CCCCCCCCEEEEH---HHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHH
T ss_conf 985284789999998520863020156---1136778448757---8889999988777656421047866751689999
Q ss_pred HHHH-HHCC--CCCC---------CCCCCCCHHHHHHHHCC
Q ss_conf 9999-7188--7898---------77302741367886424
Q gi|254780918|r 225 ETFK-KIGG--FREK---------FEGAQDYDLVLRFLENI 253 (623)
Q Consensus 225 ~~~~-~iGg--f~~~---------~~~~~D~Dl~lR~~~~~ 253 (623)
+++. +-+- +.+. +.-++|-=|+.+++.++
T Consensus 524 ~aL~~~~~~~~y~~~~~~~~~~~~~~~geDR~L~~~llskg 564 (862)
T KOG2571 524 SALMDQFVEYFYGEKFSGPRHGIQYSLGEDRWLCTLLLSKG 564 (862)
T ss_pred HHHHCCHHHHHHCHHHCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 99851448765122312766444323103579999998526
No 145
>pfam03452 Anp1 Anp1. The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins co-localize within the cis Golgi, and that they are physically associated in two distinct complexes.
Probab=95.44 E-value=0.17 Score=27.46 Aligned_cols=112 Identities=17% Similarity=0.290 Sum_probs=67.7
Q ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE---EEECCCCCHHHHHHHHHHHHHH-------CC---CEE
Q ss_conf 6224589789997475898889999999998288997489---9987757806799999998875-------79---889
Q gi|254780918|r 61 SQWQNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWEL---CIAEDCSGDIETVSLLKKYANM-------DS---RIK 127 (623)
Q Consensus 61 ~~~~~~P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~~El---iivdD~S~d~~~~~~l~~~~~~-------d~---ri~ 127 (623)
..+..++.|-|++|+.|. +.|+..-.+-+.+-|||+-.| .++.|++....+.+.|+..... +. .|.
T Consensus 20 ~~~~~~e~VLiltPl~~a-~~f~~~y~~~l~~LtYph~lI~L~Flv~~~~~~d~t~~~l~~~~~~~Q~~~~~~~~F~~it 98 (270)
T pfam03452 20 DARENKERVLILTPLRDA-ARFLPLYFDNLLKLTYPHELIDLGFLVPDTKEGDKTLEVLAAALKKTQSKGDGEKRFRSIT 98 (270)
T ss_pred CHHHCCCEEEEEECCHHH-HHHHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 354368669998140667-8999999988872789734535788716887631699999999999741787677732579
Q ss_pred EEECCCCC---C------------------HHHHHHHHHHHCCC---CEEEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 99808888---5------------------64899999996599---899997698752732079999998732
Q gi|254780918|r 128 VVFRAKNG---H------------------ISAASNSAAQLATS---EWLALLDHDDLLHPTALYYVADAINNN 177 (623)
Q Consensus 128 ~~~~~~n~---g------------------~~~a~N~~l~~a~G---e~i~~lD~DD~l~p~~L~~~~~~l~~~ 177 (623)
+++. ..+ | ++.|+|..+..+-+ .||.++|+|-+-.|. .+++-+..+
T Consensus 99 i~~k-df~~~~~q~~~~RH~~~~Q~~RR~~maraRN~Ll~~aL~p~~swVlW~DaDiv~~P~---~liedl~~h 168 (270)
T pfam03452 99 ILRK-DFGDVEGQSESDRHAFAVQGPRRKLMARARNWLLSTALKPYHSWVLWLDADIVETPP---TLIEDLMSH 168 (270)
T ss_pred EECC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHCCH---HHHHHHHHC
T ss_conf 9727-753102545454301334478999999999999998438876469998264322877---899999867
No 146
>TIGR01208 rmlA_long glucose-1-phosphate thymidylyltransferase; InterPro: IPR005908 Synonym: dTDP-D-glucose synthase This group of proteins comprises a tightly conserved but broadly distributed subfamily of known and putative bacterial glucose-1-phosphate thymidylyltransferases (2.7.7.24 from EC). It is well characterised in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. dTTP + alpha-D-glucose 1-phosphate = diphosphate + dTDP-glucose The family of known and putative glucose-1-phosphate thymidyltransferases shows a deep split into a short form (see IPR005907 from INTERPRO) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. The long form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. .
Probab=95.26 E-value=0.2 Score=27.08 Aligned_cols=207 Identities=16% Similarity=0.225 Sum_probs=127.0
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHH-C-
Q ss_conf 99747589888999999999828899748999877578067999999988757988999808888564899999996-5-
Q gi|254780918|r 71 VIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQL-A- 148 (623)
Q Consensus 71 Iiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l~~-a- 148 (623)
=+||+-|-| -|.=||+.+..---.+.=+||- +. +.++.++++..=...+-+|.|+.+.+..|++.|.-.|.+. -
T Consensus 23 ~LiPvAnKP--i~~Yaie~~~~AGI~diGIvvg-~~-~~e~i~~~~g~g~~fg~kityI~Q~~plGlAHAv~~A~~fGlg 98 (361)
T TIGR01208 23 QLIPVANKP--ILQYAIEDLIEAGITDIGIVVG-PE-TGEEIKEIVGEGERFGAKITYIVQGEPLGLAHAVYVARDFGLG 98 (361)
T ss_pred CEEEECCCC--HHHHHHHHHHHCCCEEEEEEEC-CC-CCHHHEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 306616873--2367688887469769999846-98-8212202324883023289898227876046764578884789
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHH-CCCCCCCCCC--------CEEECCCCCEE-EECCCCCCCHHHHCCCCC-CC
Q ss_conf 9989999769875273207999999873-2475542022--------20675898365-422566789667414785-43
Q gi|254780918|r 149 TSEWLALLDHDDLLHPTALYYVADAINN-NPNAEIIYSD--------EDKINENQIRS-GPYFKYDFNPELFHVHNM-IT 217 (623)
Q Consensus 149 ~Ge~i~~lD~DD~l~p~~L~~~~~~l~~-~p~~~~iYsD--------e~~i~~~g~~~-~p~fkp~~~~~~l~s~ny-i~ 217 (623)
.-||+++| .|.++.-+. .+.++.+.+ ++++-.+-+. ...++++|++. .-.=||.-=| .|+ +-
T Consensus 99 d~~FvvYL-GDNl~~~gi-~~fv~~F~~~~~da~ILL~~V~dP~~FGVA~l~d~G~~i~~LvEKPk~PP-----SNLAvv 171 (361)
T TIGR01208 99 DEDFVVYL-GDNLIQDGI-KRFVKSFEEKDYDALILLKKVEDPTAFGVAELEDDGKRILKLVEKPKEPP-----SNLAVV 171 (361)
T ss_pred CCCEEEEC-CCCHHHHHH-HHHHHHHCCCCCCCEEECCCCCCCCCCCEEEEECCCCEEEEEEECCCCCC-----CCCEEE
T ss_conf 98607973-742104237-89988533148003011043887884555899248979999883386578-----770123
Q ss_pred HHHHHHH--HHHHHHCCCCCCCCC-CCCCHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 1457689--999971887898773-0274136788642487522006842279953388533880134689987899999
Q gi|254780918|r 218 HLGVYRT--ETFKKIGGFREKFEG-AQDYDLVLRFLENIDLSQIIHIPRVLYHWRMHDNSTAQKIGNKNYAGKAGERALN 294 (623)
Q Consensus 218 ~~~~~rr--~~~~~iGgf~~~~~~-~~D~Dl~lR~~~~~~~~~i~hip~vLy~~R~~~~s~~~~~~~k~~~~~a~~~ai~ 294 (623)
.+-|||= .+|+.+--..|...| .+=.|..-+|.++. .+|.. .++---|.- +..+.-..+|.+..|.
T Consensus 172 GlY~F~pPe~if~~~~~~kPSwRGElEITD~IQ~lIe~G--y~V~~-~~v~GWWkD--------TGk~eDLL~AN~~iLd 240 (361)
T TIGR01208 172 GLYMFRPPELIFEAIKNIKPSWRGELEITDAIQYLIEKG--YKVGG-SKVKGWWKD--------TGKPEDLLDANRLILD 240 (361)
T ss_pred EEEECCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC--CEEEE-EEEEEEECC--------CCCCHHHHHHHHHHHH
T ss_conf 345338777988898528887766215775775653158--37777-999788701--------5980238999999744
Q ss_pred HHHHH
Q ss_conf 99974
Q gi|254780918|r 295 EHFQR 299 (623)
Q Consensus 295 ~~l~R 299 (623)
+..++
T Consensus 241 ~~~~~ 245 (361)
T TIGR01208 241 EEVER 245 (361)
T ss_pred HHCCH
T ss_conf 32232
No 147
>KOG1413 consensus
Probab=95.21 E-value=0.2 Score=26.99 Aligned_cols=178 Identities=16% Similarity=0.200 Sum_probs=104.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC--CCEEEEEECCCCCHHHHHHHHHHHHHHCCC----------EEEEE-
Q ss_conf 45897899974758988899999999982889--974899987757806799999998875798----------89998-
Q gi|254780918|r 64 QNKPLISVIMPVYKIKKEWLEMAIESVRSQIY--SHWELCIAEDCSGDIETVSLLKKYANMDSR----------IKVVF- 130 (623)
Q Consensus 64 ~~~P~iSIiip~yn~~~~~L~~~i~Si~~Qty--~~~EliivdD~S~d~~~~~~l~~~~~~d~r----------i~~~~- 130 (623)
..+|.+-|++-..|. ...|+.|++.|+.+-. ..+-+||.-||+.. ++.+.+..|...-.- |.+-.
T Consensus 64 ~~~~v~pvvVf~csR-~~~lr~~v~kll~yrPsaekfpiiVSQD~~~e-~vk~~~~~~g~~v~~i~~~~h~~~ei~v~~~ 141 (411)
T KOG1413 64 NWPPVIPVVVFACSR-ADALRRHVKKLLEYRPSAEKFPIIVSQDCEKE-AVKKKLLSYGSDVSHIQHPMHLKDEISVPPR 141 (411)
T ss_pred CCCCCEEEEEEECCC-HHHHHHHHHHHHHHCCCHHHCCEEEECCCCCH-HHHHHHHHHCCCHHHHCCCCCCCCCCCCCCC
T ss_conf 889853588875475-99999999999872831453677883268737-7999999841505544075334454145775
Q ss_pred CCCCC-------CHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH---HHHHCCCCCCCCCCCEEECCCCCEEEEC
Q ss_conf 08888-------5648999999965998999976987527320799999---9873247554202220675898365422
Q gi|254780918|r 131 RAKNG-------HISAASNSAAQLATSEWLALLDHDDLLHPTALYYVAD---AINNNPNAEIIYSDEDKINENQIRSGPY 200 (623)
Q Consensus 131 ~~~n~-------g~~~a~N~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~---~l~~~p~~~~iYsDe~~i~~~g~~~~p~ 200 (623)
..++. ++--|+|..+..-+-++++...+|--..|+.+.-.-. .+...|.+=++- .-+.+|.....
T Consensus 142 ~~k~~~Yy~IarHYkwAL~q~F~~~~~s~vii~eDDl~iapDFF~YF~~t~~llk~D~siwcvs----aWNDNGk~~~I- 216 (411)
T KOG1413 142 HKKFNAYYKIARHYKWALNQLFIVFRESRVIITEDDLNIAPDFFSYFRNTIILLKGDPSIWCVS----AWNDNGKKQTI- 216 (411)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE----EECCCCCCCCC-
T ss_conf 0002316889999999986477652775368832314434689999987799872698537753----20468986532-
Q ss_pred CCCCCCHHHHCCCCCC-CHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 5667896674147854-314576899999718-878987730274136788642487
Q gi|254780918|r 201 FKYDFNPELFHVHNMI-THLGVYRTETFKKIG-GFREKFEGAQDYDLVLRFLENIDL 255 (623)
Q Consensus 201 fkp~~~~~~l~s~nyi-~~~~~~rr~~~~~iG-gf~~~~~~~~D~Dl~lR~~~~~~~ 255 (623)
+ .-.++++....++ |-..|..+.++++.- +|..+| ||=|+|.-|....
T Consensus 217 -d-~~~~~~lYRtDFFpGLGWml~~~~W~ELsp~wP~~f-----WDDWmr~pe~rK~ 266 (411)
T KOG1413 217 -D-STRPSLLYRTDFFPGLGWMLTKKLWEELSPKWPVAF-----WDDWMRIPENRKG 266 (411)
T ss_pred -C-CCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCC-----HHHHHHCHHHHCC
T ss_conf -3-566102011355554047878988986187776432-----1565426565235
No 148
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=95.18 E-value=0.21 Score=26.95 Aligned_cols=186 Identities=15% Similarity=0.158 Sum_probs=90.0
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 88881699995377455699999876420797515799714899816899999998630888279975788873388989
Q gi|254780918|r 321 NPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINN 400 (623)
Q Consensus 321 ~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N 400 (623)
.++|++.| ++..++...|+.+... ... +|+||-+...+ ...+.+.........+..+.+. .+.+-+.+.-
T Consensus 19 ~PK~Ll~v-----~gkplI~~~l~~l~~~-g~~--~iiiv~~~~~~-~i~~~~~~~~~~~~~i~~~~e~-~~~Gt~~al~ 88 (217)
T cd04181 19 RPKPLLPI-----AGKPILEYIIERLARA-GID--EIILVVGYLGE-QIEEYFGDGSKFGVNIEYVVQE-EPLGTAGAVR 88 (217)
T ss_pred CCCCCCEE-----CCCHHHHHHHHHHHHC-CCC--EEEEEEECCCC-CHHEEEECCCCCCCEEEEEECC-CCCCCHHHHH
T ss_conf 98402389-----9944999999999974-997--79998612331-0000110012579659995348-8776345543
Q ss_pred HHHHHCCCCEEEEECCCCEEECHHHHHHHHHHH-CCCCEEEEEEEEECCCCCCCCCCCEEEECCEE-ECCCCCCCCCCCC
Q ss_conf 878614897474405882782816889988774-28981699537664676756778704413254-0678656643225
Q gi|254780918|r 401 NATLHAKGQYFCFLNNDTEVINGQWLSEMMGIA-SQPQVGAVGARLWYRRKKLWKRSKRLQHGGVI-MGINNIAGHKNKH 478 (623)
Q Consensus 401 ~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~-~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v-~g~~~~~~~~~~~ 478 (623)
.+...-..+.+++++.|+ +++.+. ..++... .....+.+...-.. .+. . -|++ +...+. ....
T Consensus 89 ~a~~~i~~~~~lv~~~D~-i~~~~~-~~~~~~~~~~~~~~~l~~~~~~------~~~---~-yg~v~~d~~~~---v~~i 153 (217)
T cd04181 89 NAEDFLGDDDFLVVNGDV-LTDLDL-SELLRFHREKGADATIAVKEVE------DPS---R-YGVVELDDDGR---VTRF 153 (217)
T ss_pred HHHCCCCCCCEEEECCCC-CCCCCH-HHHHHHHHHCCCCEEEEEEEEC------CCC---C-CEEEEECCCCC---EEEE
T ss_conf 210026999789972782-225089-9999999757996799987403------677---6-30899888510---4368
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 655557644222233444441110110204388889871799976876323168899999974981998
Q gi|254780918|r 479 HKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVW 547 (623)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~ 547 (623)
...+... ..+ .+.+| ++++++++|+.+.-..+. ..+.-.|+.-++.+.| ++-.
T Consensus 154 ~EKp~~~----------~~~-~~~~G-~y~~~~~~f~~i~~~~~~---~~~~l~d~~~~l~~~~-kv~~ 206 (217)
T cd04181 154 VEKPTLP----------ESN-LANAG-IYIFEPEILDYIPEILPR---GEDELTDAIPLLIEEG-KVYG 206 (217)
T ss_pred EECCCCC----------CCC-EEEEE-EEEECHHHHHHHHHCCCC---CEEEHHHHHHHHHHCC-CEEE
T ss_conf 9889998----------788-48998-999999999976515888---7511899999998579-9699
No 149
>pfam09258 Glyco_transf_64 Glycosyl transferase family 64 domain. Members of this family catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analog of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate.
Probab=95.07 E-value=0.22 Score=26.78 Aligned_cols=103 Identities=18% Similarity=0.194 Sum_probs=62.0
Q ss_pred EEEEEC-CCCHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH--
Q ss_conf 999953-77455699999876420797515799714-89981689999999863088827997578887338898987--
Q gi|254780918|r 327 SIIIPT-YNHHHLLKICLESIYHKTTYSSFEVIIID-NLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNA-- 402 (623)
Q Consensus 327 SIIIp~-~n~~~~l~~cl~Sl~~~t~y~~~EiivVd-n~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g-- 402 (623)
+|||-| +++.+.|.+.|..+. +..+-+ +|+||= |..+.++...+ ....--++++....+. ++|+=
T Consensus 2 T~vi~t~~~R~~~L~~~l~~~~-~~~~l~-~I~VvWn~~~~pp~~~~~----~~~~vPv~v~~~~~ns-----LnnRF~p 70 (244)
T pfam09258 2 TAVINTYYSRIDLLRKLLQHYA-GSPHLA-KIVVVWNNPKPPPELSKW----PSPAVPLTVIRTKRNS-----LNNRFLP 70 (244)
T ss_pred EEEEECCCCCHHHHHHHHHHHH-CCCCCC-EEEEEECCCCCCCCHHCC----CCCCCCEEEEECCCCC-----CCCCCCC
T ss_conf 6999547666799999999997-599867-799997989999822217----8998557999689876-----3324578
Q ss_pred HHHCCCCEEEEECCCCEEECHHHHHHHHH-HHCCCC--EEEE
Q ss_conf 86148974744058827828168899887-742898--1699
Q gi|254780918|r 403 TLHAKGQYFCFLNNDTEVINGQWLSEMMG-IASQPQ--VGAV 441 (623)
Q Consensus 403 ~~~a~geyilfLn~D~~v~~~~wL~~Ll~-~~~~~~--vG~V 441 (623)
...-+.+=|+.+|+|+. ++.+-|+---. +-+.|+ ||..
T Consensus 71 ~~~I~T~AVlslDDDi~-l~~~el~faF~vWr~~pdRiVGf~ 111 (244)
T pfam09258 71 YPEIETDAVLSLDDDIL-LSTDELDFAFEVWRSFPDRIVGFP 111 (244)
T ss_pred CCCCCCCEEEEECCCCC-CCHHHHHHHHHHHHHCCCCEECCE
T ss_conf 87676036998657425-558999999999986978664542
No 150
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=94.91 E-value=0.25 Score=26.47 Aligned_cols=184 Identities=13% Similarity=0.153 Sum_probs=90.8
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 88881699995377455699999876420797515799714899816899999998630888279975788873388989
Q gi|254780918|r 321 NPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINN 400 (623)
Q Consensus 321 ~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N 400 (623)
.++|+|-| ++..++...|+.+... ... +|+|+-+.-.+ ...+++.........+..+.+ +.+.|-+.+.-
T Consensus 19 ~PKpLl~i-----~gkpli~~~l~~l~~~-gi~--~iii~~~~~~~-~i~~~~~~~~~~~~~i~~~~e-~~~lGt~gal~ 88 (223)
T cd06915 19 LPKPLAPV-----AGRPFLEYLLEYLARQ-GIS--RIVLSVGYLAE-QIEEYFGDGYRGGIRIYYVIE-PEPLGTGGAIK 88 (223)
T ss_pred CCCCCCEE-----CCEEHHHHHHHHHHHC-CCC--EEEEEECCHHH-HHHHHHHCCCCCCCCCEEEEE-EEECCHHHHHH
T ss_conf 98311289-----9998999999999975-997--78873010234-334433102345776147886-42364688998
Q ss_pred HHHHHCCCCEEEEECCCCEEECHHHHHHHHHHHCCCC--EEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCC
Q ss_conf 8786148974744058827828168899887742898--16995376646767567787044132540678656643225
Q gi|254780918|r 401 NATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQ--VGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKH 478 (623)
Q Consensus 401 ~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~--vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~ 478 (623)
.+.+...+|.++++|.|+ +++.+ +..|+......+ +.++.-+. ++ .-.+.-+.+..++.. ...
T Consensus 89 ~a~~~i~~~~flv~~gD~-~~~~~-l~~~~~~~~~~~~~~~l~~~~~---------~~-~~~~g~v~~d~~~~i---~~~ 153 (223)
T cd06915 89 NALPKLPEDQFLVLNGDT-YFDVD-LLALLAALRASGADATMALRRV---------PD-ASRYGNVTVDGDGRV---IAF 153 (223)
T ss_pred HHHHHCCCCCEEEECCCE-EECCC-HHHHHHHHHHCCCCEEEEEEEC---------CC-CCCCCCEEECCCCCE---EEE
T ss_conf 888636999889982771-12677-8999999985799789999989---------98-302785898797314---234
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 655557644222233444441110110204388889871799976876323168899999974981998
Q gi|254780918|r 479 HKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVW 547 (623)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~ 547 (623)
.. .|. ....+ .+.+.+.++++++|+.+-. ..+. ...|+.-++.+.|.-..|
T Consensus 154 ~e----K~~------~~~~~--~i~~Giyi~~~~i~~~~~~---~~~~---~~~d~~~~li~~~~v~~~ 204 (223)
T cd06915 154 VE----KGP------GAAPG--LINGGVYLLRKEILAEIPA---DAFS---LEADVLPALVKRGRLYGF 204 (223)
T ss_pred EE----CCC------CCCCC--EEEEEEEEECHHHHHHHHC---CCCC---CHHHHHHHHHHCCCEEEE
T ss_conf 75----489------87668--2446389998999974142---5997---279999999834997999
No 151
>pfam07507 WavE WavE lipopolysaccharide synthesis. These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide.
Probab=94.85 E-value=0.067 Score=29.94 Aligned_cols=104 Identities=14% Similarity=0.176 Sum_probs=59.5
Q ss_pred EEEEE--CCCCC-----CHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC-----
Q ss_conf 89997--47589-----8889999999998288997489998775780679999999887579889998088885-----
Q gi|254780918|r 69 ISVIM--PVYKI-----KKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGH----- 136 (623)
Q Consensus 69 iSIii--p~yn~-----~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g----- 136 (623)
||||| |+++. ++.-...||+||.. -+|+-|||+---..+|-+..+.=+-....||....... .+.+
T Consensus 1 IsvViQGPV~~~~~r~~~~~it~~cl~SiR~-~lP~a~IIlSTW~~~d~s~l~~Dqii~s~DPG~~~~~~-~~~~~~~N~ 78 (310)
T pfam07507 1 ISVVVQGPVQAYQGREQEKGITQKCLASIRT-HLPGAEIILSTWPGQDLSGLDYDQIVISDDPGSNIVVY-DGAPQPLNN 78 (310)
T ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHH-HCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCC-CCCCCCCCH
T ss_conf 9699967755556754430589999999997-68998599970789876668834078658998663365-898775532
Q ss_pred --HHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf --64899999996599899997698752732079999998
Q gi|254780918|r 137 --ISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAI 174 (623)
Q Consensus 137 --~~~a~N~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l 174 (623)
.-..+..||+.++.+|++-|-+|..++.+.+..+.+..
T Consensus 79 NRQIvST~aGL~~v~t~YaiKlRsD~~Lt~~~~~~i~~~~ 118 (310)
T pfam07507 79 NRQIVSTLAGLKAVKTPYAIKLRSDNYLTGNGFVEIQEQY 118 (310)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHCCC
T ss_conf 2679999878987366013664022210540688861004
No 152
>KOG1476 consensus
Probab=94.74 E-value=0.27 Score=26.21 Aligned_cols=116 Identities=16% Similarity=0.239 Sum_probs=68.5
Q ss_pred CCCEEEEEECCCCH---HHHHHHHHHHHHCCCCCCEEEEEECCC-CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHH--
Q ss_conf 88169999537745---569999987642079751579971489-981689999999863088827997578887338--
Q gi|254780918|r 323 PPLVSIIIPTYNHH---HLLKICLESIYHKTTYSSFEVIIIDNL-SDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYS-- 396 (623)
Q Consensus 323 ~P~VSIIIp~~n~~---~~l~~cl~Sl~~~t~y~~~EiivVdn~-S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s-- 396 (623)
.|.|-||.|||.+. ..|.+.-.+|. +. +|+-.|||.++ +..+++...|++-.- +...++... +.++-
T Consensus 86 ~~~iivVTPTY~R~~q~~~LtRlanTL~-~V--~nLhWIVVEd~~~~~p~v~~~L~rtgl--~ythl~~~t--~~~~~~~ 158 (330)
T KOG1476 86 LPTIIVVTPTYVRPVQAAELTRLANTLR-LV--PNLHWIVVEDGEGTTPEVSGILRRTGL--PYTHLVHKT--PMGYKAR 158 (330)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHH-HC--CCEEEEEEECCCCCCHHHHHHHHHCCC--CEEEEECCC--CCCCCCC
T ss_conf 8618998662330457789998887886-26--871699982687777778999987199--537885157--7787532
Q ss_pred ---HHHHHHHHHCC---------CCEEEEECCCCEEECHHHHHHHHH--HHCCCCEEEEEEEEE
Q ss_conf ---89898786148---------974744058827828168899887--742898169953766
Q gi|254780918|r 397 ---RINNNATLHAK---------GQYFCFLNNDTEVINGQWLSEMMG--IASQPQVGAVGARLW 446 (623)
Q Consensus 397 ---~~~N~g~~~a~---------geyilfLn~D~~v~~~~wL~~Ll~--~~~~~~vG~Vg~~ll 446 (623)
.-.|.|.+.-+ .-++-|-|+|= ..+=.-+++|-. .+.---||.||+..+
T Consensus 159 rg~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN-~YdleLF~eiR~v~~~gvWpVg~vgg~~v 221 (330)
T KOG1476 159 RGWEQRNMALRWIRSRILRHHKLEGVVYFADDDN-TYDLELFEEIRNVKKFGVWPVGLVGGARV 221 (330)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC-CHHHHHHHHHHCCCEEEEEEEEECCCEEE
T ss_conf 0056788999999875134456660799726886-00289999875012331576640477044
No 153
>pfam00483 NTP_transferase Nucleotidyl transferase. This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars.
Probab=94.70 E-value=0.28 Score=26.15 Aligned_cols=193 Identities=15% Similarity=0.073 Sum_probs=90.5
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 88816999953774556999998764207975157997148998168999999986308882799757888733889898
Q gi|254780918|r 322 PPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNN 401 (623)
Q Consensus 322 ~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~ 401 (623)
++|++ |..++..+++..|+.+... ... ++++|.+........+++.........+.++.+. .+.|-+.+.-.
T Consensus 21 pKpll----pv~~~~pli~~~l~~l~~~-g~~--~~~~v~~~~~~~~i~~~~~~~~~~~~~i~~~~e~-~~~Gta~ai~~ 92 (247)
T pfam00483 21 AKPLV----PVLDKYPMIQYTLSRLMNA-GIR--EPIVICTQEHRFLVAEQLGDGSKFGLQVTYALQP-EPRGTAPAVAL 92 (247)
T ss_pred CCCEE----EECCCCCHHHHHHHHHHHC-CCC--HHEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEC-CCCCCHHHHHH
T ss_conf 98851----8289978999999999865-995--2033133677888999986336677437774312-77770568999
Q ss_pred HHHHC---CCCEEEEECCCCEEECHHHHHHHHHHHC-C-CCEEEEEEEEECCCCCCCCCCCEEEECCEE-ECCCCCCCCC
Q ss_conf 78614---8974744058827828168899887742-8-981699537664676756778704413254-0678656643
Q gi|254780918|r 402 ATLHA---KGQYFCFLNNDTEVINGQWLSEMMGIAS-Q-PQVGAVGARLWYRRKKLWKRSKRLQHGGVI-MGINNIAGHK 475 (623)
Q Consensus 402 g~~~a---~geyilfLn~D~~v~~~~wL~~Ll~~~~-~-~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v-~g~~~~~~~~ 475 (623)
+.... ..+.++++|+|+ +.+.+ +.+++.... . .++.++-. ..+. ..+. .-|++ ++.++. .
T Consensus 93 a~~~l~~~~~~~~lv~~~D~-~~~~~-~~~~l~~h~~~~~~~~~~~~--~~~~---~~~~----~yGvv~~d~~~~---V 158 (247)
T pfam00483 93 AADFLGDDDPELVLVLGGDH-IYRMD-FEEAVQKARAKAADGTVTFG--IVPV---EDPT----GYGVIEFDENGR---V 158 (247)
T ss_pred HHHHHCCCCCCEEEEECCCC-CCCHH-HHHHHHHHHHHCCCCEEEEE--EECC---CCCC----CCCEEEECCCCC---C
T ss_conf 99864347876279977853-34440-99999999984799868885--5655---5763----451489888665---0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 225655557644222233444441110110204388889871799976876323168899999974981998
Q gi|254780918|r 476 NKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVW 547 (623)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~ 547 (623)
..... .|... ...++ +.+| ..+++.++|+.+-..-+..-...++-.|++-++.+.|..+..
T Consensus 159 ~~~~E----KP~~~-----~~~~~-~~~G-~Y~~~~~i~~~~~~~~~~~~~~e~~~~d~i~~~i~~g~~~~~ 219 (247)
T pfam00483 159 IRFVE----KPDLP-----KASNY-ASMG-IYFFNSGVFLFLAKYLKELARGEDEITDAIPAALEDGDLDLA 219 (247)
T ss_pred CCEEE----CCCCH-----HHHHH-EEEE-EEEECHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 30467----79962-----44342-5611-499889999999965777767994499999999987996399
No 154
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=94.63 E-value=0.29 Score=26.04 Aligned_cols=171 Identities=16% Similarity=0.216 Sum_probs=74.4
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCC-C
Q ss_conf 974758988899999999982889974899987757806799999998875798899980888856489999999659-9
Q gi|254780918|r 72 IMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQLAT-S 150 (623)
Q Consensus 72 iip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l~~a~-G 150 (623)
++|+|+- ..|.-+|+.+..---. +++||-+--.-+..++++..-.....+|.|..+++..|++.|.-.|-.... .
T Consensus 25 LlpV~~K--Pmi~y~l~~L~~aGI~--dI~II~~~~~~~~~~~llGdgs~~gv~itY~~Q~~p~GlA~Av~~a~~fv~~~ 100 (286)
T COG1209 25 LLPVYDK--PMIYYPLETLMLAGIR--DILIVVGPEDKPTFKELLGDGSDFGVDITYAVQPEPDGLAHAVLIAEDFVGDD 100 (286)
T ss_pred CCEECCC--CHHHHHHHHHHHCCCC--EEEEEECCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 3211686--2158579999975985--69999668850566633367100386369996589876899999888645898
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHH-CCCCCCC-CC--C-----CEEECCCCCEEEECCCCCCCHHHHCCCCCCCHHHH
Q ss_conf 89999769875273207999999873-2475542-02--2-----20675898365422566789667414785431457
Q gi|254780918|r 151 EWLALLDHDDLLHPTALYYVADAINN-NPNAEII-YS--D-----EDKINENQIRSGPYFKYDFNPELFHVHNMITHLGV 221 (623)
Q Consensus 151 e~i~~lD~DD~l~p~~L~~~~~~l~~-~p~~~~i-Ys--D-----e~~i~~~g~~~~p~fkp~~~~~~l~s~nyi~~~~~ 221 (623)
+|++.| .|.++.- .|...++...+ .+++.++ |- | ...++++++-....-||.-- -|+--+..+-+
T Consensus 101 ~f~l~L-GDNi~~~-~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~d~~~~v~~l~EKP~~P----~SNlAvtGlY~ 174 (286)
T COG1209 101 DFVLYL-GDNIFQD-GLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDEDGKVIGLEEKPKEP----KSNLAVTGLYF 174 (286)
T ss_pred CEEEEE-CCCEECC-CHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECCCCCEEEEEECCCCC----CCCEEEEEEEE
T ss_conf 659992-6844105-77999999852489948999984895304489986899687767889999----87626889997
Q ss_pred HHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHC
Q ss_conf 689999971887898773-0274136788642
Q gi|254780918|r 222 YRTETFKKIGGFREKFEG-AQDYDLVLRFLEN 252 (623)
Q Consensus 222 ~rr~~~~~iGgf~~~~~~-~~D~Dl~lR~~~~ 252 (623)
|+.++|+.+-...+.-.| .+=.|..-.++++
T Consensus 175 ~d~~Vf~~~~~ikPS~RGElEITd~i~~~i~~ 206 (286)
T COG1209 175 YDPSVFEAIKQIKPSARGELEITDAIDLYIEK 206 (286)
T ss_pred ECHHHHHHHHCCCCCCCCCEEEHHHHHHHHHC
T ss_conf 08589999871898877856752889999976
No 155
>pfam07507 WavE WavE lipopolysaccharide synthesis. These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide.
Probab=94.39 E-value=0.079 Score=29.50 Aligned_cols=103 Identities=20% Similarity=0.309 Sum_probs=54.9
Q ss_pred EEEEE--ECC------CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE--EECCCCCCH
Q ss_conf 69999--537------74556999998764207975157997148998168999999986308882799--757888733
Q gi|254780918|r 326 VSIII--PTY------NHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVI--TDNTHPFNY 395 (623)
Q Consensus 326 VSIII--p~~------n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i--~~~~~~~n~ 395 (623)
||||| |.. .....+..||+|+... .|.-|||+---..+|-...++-+-+....|+..+. ...+.+.|.
T Consensus 1 IsvViQGPV~~~~~r~~~~~it~~cl~SiR~~--lP~a~IIlSTW~~~d~s~l~~Dqii~s~DPG~~~~~~~~~~~~~N~ 78 (310)
T pfam07507 1 ISVVVQGPVQAYQGREQEKGITQKCLASIRTH--LPGAEIILSTWPGQDLSGLDYDQIVISDDPGSNIVVYDGAPQPLNN 78 (310)
T ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCH
T ss_conf 96999677555567544305899999999976--8998599970789876668834078658998663365898775532
Q ss_pred HHH---HHHHHHHCCCCEEEEECCCCEEECHHHHHHHHH
Q ss_conf 889---898786148974744058827828168899887
Q gi|254780918|r 396 SRI---NNNATLHAKGQYFCFLNNDTEVINGQWLSEMMG 431 (623)
Q Consensus 396 s~~---~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~ 431 (623)
-+. -..|+++++.+|.+=|-.|... +.+-+-.+.+
T Consensus 79 NRQIvST~aGL~~v~t~YaiKlRsD~~L-t~~~~~~i~~ 116 (310)
T pfam07507 79 NRQIVSTLAGLKAVKTPYAIKLRSDNYL-TGNGFVEIQE 116 (310)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCC-CCCHHHHHHC
T ss_conf 2679999878987366013664022210-5406888610
No 156
>pfam01697 DUF23 Domain of unknown function. This family consists of an approximately 300 residue long region found in C. elegans and drosophila proteins, the function of this region is unknown. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=94.36 E-value=0.33 Score=25.66 Aligned_cols=109 Identities=21% Similarity=0.278 Sum_probs=69.8
Q ss_pred EEEEE-CCCCCCHH--HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCC-------C----
Q ss_conf 89997-47589888--9999999998288997489998775780679999999887579889998088-------8----
Q gi|254780918|r 69 ISVIM-PVYKIKKE--WLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAK-------N---- 134 (623)
Q Consensus 69 iSIii-p~yn~~~~--~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~-------n---- 134 (623)
+.|+| |.|-...+ .|.+-|+....|--. -+.+-+..+++ ++..+|+.|.+. ..+.+..-+. +
T Consensus 3 ~~vCv~pl~~~~~~~~~~~e~ie~~~~~g~~--~~~~Y~~~~~~-~~~~vl~~Y~~~-G~v~i~~w~~~~~~~~~~~~~~ 78 (262)
T pfam01697 3 VVVCVAPLFGNEAKWLQLQEFIEYHKLQGAT--HFHIYLHSITE-YDYKVLKEYEKT-GYVELIPWPSGPPYLEPNSNVE 78 (262)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHCCC--EEEEEECCCCH-HHHHHHHHHHHC-CCEEEEECCCCCCCCCCHHHHH
T ss_conf 6998586545740589999999999985881--89999447876-899999999868-9579997676544455106899
Q ss_pred -CCHHHHHHHHHHHCC--CCEEEEECCCCCCCCCH----HHHHHHHHHHCCCCC
Q ss_conf -856489999999659--98999976987527320----799999987324755
Q gi|254780918|r 135 -GHISAASNSAAQLAT--SEWLALLDHDDLLHPTA----LYYVADAINNNPNAE 181 (623)
Q Consensus 135 -~g~~~a~N~~l~~a~--Ge~i~~lD~DD~l~p~~----L~~~~~~l~~~p~~~ 181 (623)
.|...|.|.++-.++ .+|++|+|-|+++.|.. .+++...+...++..
T Consensus 79 ~~~q~~a~~DCl~r~k~~~~~v~f~DiDE~i~p~~~~t~~~~~~~~~~~~~~~~ 132 (262)
T pfam01697 79 WRNQAAAQNDCLLRYKEAAKWIAFLDLDERLVPRNAPTYGEEFLDLLRSLPDIS 132 (262)
T ss_pred HHHHHHHHHHHHHHHHHHCEEEEEECHHHEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 998899988899975101238999433243403899737999999997388764
No 157
>pfam11735 CAP59_mtransfer Cryptococcal mannosyltransferase 1. The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1, EC:2.4.1.-.
Probab=94.21 E-value=0.36 Score=25.46 Aligned_cols=108 Identities=19% Similarity=0.160 Sum_probs=60.1
Q ss_pred CCHHHHHHHHH-H---HHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHH---CCC-CCEEEEECCCCCC-----------
Q ss_conf 74556999998-7---642079751579971489981689999999863---088-8279975788873-----------
Q gi|254780918|r 334 NHHHLLKICLE-S---IYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQK---KYP-NLRVITDNTHPFN----------- 394 (623)
Q Consensus 334 n~~~~l~~cl~-S---l~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~---~~~-~~~~i~~~~~~~n----------- 394 (623)
|..++|..-.. + +.......|.=|=|++|+|.| .|.+.|+.+.. +.+ ...++.....+..
T Consensus 11 ~~~~ll~~~w~~avv~Li~~LGp~NvfvSIyE~~S~D-~t~~aL~~L~~~L~~lgv~~~i~~~~~~~~~~~~~~~~~~RI 89 (244)
T pfam11735 11 NNEEILRDLWGDAVVELIRLLGPENVFVSIYESGSGD-GTKEALRALDPELDALGVRRSIVLSEITHLDEDSLPPRLRRI 89 (244)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC-CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHH
T ss_conf 7254647878999999999859561999999689998-789999999989986899659982788776634466411067
Q ss_pred --HHHHHHHHHHH----C--CC---CEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf --38898987861----4--89---747440588278281688998877428981699537
Q gi|254780918|r 395 --YSRINNNATLH----A--KG---QYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGAR 444 (623)
Q Consensus 395 --~s~~~N~g~~~----a--~g---eyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ 444 (623)
.|...|.+++- + .| +-|+||| || +++|.=+-+|+..-...+..++++.
T Consensus 90 ~~LA~lRN~AL~PL~~~~~~~~~~fdkVlFlN-DV-~f~~~Dil~LL~t~~~~~y~aaCa~ 148 (244)
T pfam11735 90 PYLAELRNLALEPLYELARKRGTKFDKVLFLN-DV-VFCPEDILELLFTTNVGNYAAACAM 148 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC-CC-CCCHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 99999988877787875451599767799977-74-2788999999836786870661100
No 158
>KOG3916 consensus
Probab=93.95 E-value=0.4 Score=25.15 Aligned_cols=58 Identities=26% Similarity=0.359 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCC--CCCCCHHHHHHHHCCCCCCEEECCCCEEEEEECCCC
Q ss_conf 543145768999997188789877--302741367886424875220068422799533885
Q gi|254780918|r 215 MITHLGVYRTETFKKIGGFREKFE--GAQDYDLVLRFLENIDLSQIIHIPRVLYHWRMHDNS 274 (623)
Q Consensus 215 yi~~~~~~rr~~~~~iGgf~~~~~--~~~D~Dl~lR~~~~~~~~~i~hip~vLy~~R~~~~s 274 (623)
|+|...+..++-|.+|.||.-.|= |.+|-|++.|+.... .+|-+=|--.-+|++...+
T Consensus 260 ~FGGVsalt~~qf~kINGFsN~fWGWGGEDDDl~nRv~~ag--~~IsRp~~~igrYkMikH~ 319 (372)
T KOG3916 260 YFGGVSALTKEQFRKINGFSNAFWGWGGEDDDLWNRVQLAG--MKISRPPPEIGRYKMIKHH 319 (372)
T ss_pred HHCCHHHCCHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHCC--CEEECCCCCCCEEEEEECC
T ss_conf 40763135699998765997000265875027999998648--6215588764305775310
No 159
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein A; Reviewed
Probab=93.71 E-value=0.45 Score=24.89 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCC--CCHHHHHHHHHHHCCCCEE
Q ss_conf 74556999998764207975157997148998168999999986308882799757888--7338898987861489747
Q gi|254780918|r 334 NHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHP--FNYSRINNNATLHAKGQYF 411 (623)
Q Consensus 334 n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~--~n~s~~~N~g~~~a~geyi 411 (623)
++..++++.++.+....+ +|+|+-|...+ . ++. .+..++.+...+ +-.+ +.-.|++.++.+++
T Consensus 28 ~G~~li~~~~~~l~~~~~----~v~i~~~~~~~--~---~~~-----~~~~vi~D~~~~~~GPL~-Gi~saL~~~~~~~v 92 (193)
T PRK00317 28 NGKPLIQHVIDRLAPQVD----EIVINANRNLA--R---YAA-----FGLPVIPDELADFPGPLA-GILAGLQQAETEWV 92 (193)
T ss_pred CCEEHHHHHHHHHHHHCC----EEEEECCCCHH--H---HHH-----CCCEEEECCCCCCCCCHH-HHHHHHHHCCCCEE
T ss_conf 997499999998775457----68997687888--8---864-----499699637877667589-99999862687759
Q ss_pred EEECCCCEEECHHHHHHHHHHHCCCCEEE
Q ss_conf 44058827828168899887742898169
Q gi|254780918|r 412 CFLNNDTEVINGQWLSEMMGIASQPQVGA 440 (623)
Q Consensus 412 lfLn~D~~v~~~~wL~~Ll~~~~~~~vG~ 440 (623)
+++-.|+=.++++.++.|++.+...+..+
T Consensus 93 lv~~~DmP~i~~~~i~~L~~~~~~~~~~i 121 (193)
T PRK00317 93 LFVPCDTPFLPRDLVARLAQALIEEDADI 121 (193)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 99626778898999999999987479983
No 160
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=93.52 E-value=0.48 Score=24.69 Aligned_cols=205 Identities=11% Similarity=0.127 Sum_probs=97.4
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 88816999953774556999998764207975157997148998168999999986308882799757888733889898
Q gi|254780918|r 322 PPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNN 401 (623)
Q Consensus 322 ~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~ 401 (623)
++|++.| ++..+++..|+++... . .+ +|+||-+.-.+ ...+++.......-.+..+.+. .+.|-+.+.-.
T Consensus 22 PK~Ll~i-----~gkpli~~~i~~l~~~-g-i~-~Iiiv~~~~~~-~i~~~~~~~~~~~~~i~~v~~~-~~~Gt~~al~~ 91 (236)
T cd04189 22 PKQLIPV-----AGKPIIQYAIEDLREA-G-IE-DIGIVVGPTGE-EIKEALGDGSRFGVRITYILQE-EPLGLAHAVLA 91 (236)
T ss_pred CCEEEEE-----CCCHHHHHHHHHHHHC-C-CC-EEEEEEECCHH-HCCCCCCCCCCCCCCEEEEEEC-CCCCHHHHHHH
T ss_conf 8020389-----9860999999999986-9-95-89998541412-2012234666478754898621-55324578777
Q ss_pred HHHHCCCCEEEEECCCCEEECHHHHHHHHHHHCC-CCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCC
Q ss_conf 7861489747440588278281688998877428-981699537664676756778704413254067865664322565
Q gi|254780918|r 402 ATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQ-PQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHK 480 (623)
Q Consensus 402 g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~-~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~ 480 (623)
+...-.++-+++++.|+ +++.+..+.+..+... .++.++..+.-. +. ..|++..-++.. .....
T Consensus 92 a~~~l~~~~~iv~~gD~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~----~~g~~~~~~~~v---~~i~e 156 (236)
T cd04189 92 ARDFLGDEPFVVYLGDN-LIQEGISPLVRDFLEEDADASILLAEVED-------PR----RFGVAVVDDGRI---VRLVE 156 (236)
T ss_pred HHHHCCCCCEEEEECCC-EECCCHHHHHHHHHHCCCCCEEEEEEEEC-------CC----CCCEEEECCCEE---EECCC
T ss_conf 66514899758972794-65468999999998627861147898624-------66----762899736235---43132
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEECCCC
Q ss_conf 55576442222334444411101102043888898717999768763231688999999749819984754999517733
Q gi|254780918|r 481 ARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHDESRT 560 (623)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~es~s 560 (623)
.+... ..+. +++| +.++++++|+.+-.+... ....++=.|+.-++.+.|.++.+.+.-.-|+
T Consensus 157 ----K~~~~------~~~~-~~~G-iy~f~~~i~~~~~~~~~~-~~~e~~i~d~i~~li~~g~~v~~~~~~g~W~----- 218 (236)
T cd04189 157 ----KPKEP------PSNL-ALVG-VYAFTPAIFDAISRLKPS-WRGELEITDAIQWLIDRGRRVGYSIVTGWWK----- 218 (236)
T ss_pred ----CCCCC------CCCE-EEEE-EEEECHHHHHHHHHCCCC-CCCCEEHHHHHHHHHHCCCCEEEEEECCEEE-----
T ss_conf ----58898------7675-9999-999998999999847998-7881338999999998799889997199799-----
Q ss_pred CCCCCCCHHHHH
Q ss_conf 677668999999
Q gi|254780918|r 561 RKYDHEDPAKMI 572 (623)
Q Consensus 561 rg~~~~~~~k~~ 572 (623)
|..+|+...
T Consensus 219 ---Digtpedl~ 227 (236)
T cd04189 219 ---DTGTPEDLL 227 (236)
T ss_pred ---ECCCHHHHH
T ss_conf ---798999999
No 161
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=93.36 E-value=0.51 Score=24.53 Aligned_cols=203 Identities=12% Similarity=0.138 Sum_probs=103.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECC-CCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 745569999987642079751579971489981689999999863088827997578-8873388989878614897474
Q gi|254780918|r 334 NHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNT-HPFNYSRINNNATLHAKGQYFC 412 (623)
Q Consensus 334 n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~-~~~n~s~~~N~g~~~a~geyil 412 (623)
++..++.++.+..... ...+ +|+|. ++|.+..+. ++.+ +..++.... ..-|-.+ +.-++..-..|+++
T Consensus 25 ~g~pmi~~v~~~a~~s-~~~d-~v~Va---Tdd~eI~~~----~k~~-g~~~i~ts~~~~~GTdR-i~Ea~~~~~~d~iv 93 (238)
T PRK13368 25 LGKPMIQHVYERAAQA-AGVE-EVYVA---TDDQRIEDA----VEAF-GGKVVMTSDDHLSGTDR-LAEVMLKIEADIYI 93 (238)
T ss_pred CCCCHHHHHHHHHHHC-CCCC-EEEEE---CCCHHHHHH----HHCC-CCEEEECCCCCCCCHHH-HHHHHHHCCCCEEE
T ss_conf 8969999999999846-8988-29995---684248777----5004-63278515655771478-99998515987899
Q ss_pred EECCCCEEECHHHHHHHHHHHC-CCCEEEEEE--EEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4058827828168899887742-898169953--7664676756778704413254067865664322565555764422
Q gi|254780918|r 413 FLNNDTEVINGQWLSEMMGIAS-QPQVGAVGA--RLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSVPNYQ 489 (623)
Q Consensus 413 fLn~D~~v~~~~wL~~Ll~~~~-~~~vG~Vg~--~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~~~~~~~ 489 (623)
.+..|-=.++|+.++.+.+.+. .+...+++. ++... .....++ .+ -+++..++.+-+ |...+.+..... .
T Consensus 94 nvQgDePli~p~~I~~~i~~~~~~~~~~v~t~~~~~~~~-~~~~n~n-~v---Kvv~~~~~~~ly-fSR~~ip~~~~~-~ 166 (238)
T PRK13368 94 NVQGDEPLIRPRDIDTLIQPMLDDPSINVATLCAPISTE-EEFESPN-VV---KVVVDKNGDALY-FSRSPIPSRRDG-E 166 (238)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCH-HHHCCCC-CE---EEEECCCCCCCC-CCCCCCCCCCCC-C
T ss_conf 953886778999999999999837765276787416888-8843898-52---999899787011-452567511245-4
Q ss_pred CCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEECCCCCCCCCCCHH
Q ss_conf 22334444411101102043888898717999768763231688999999749819984754999517733677668999
Q gi|254780918|r 490 AFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHDESRTRKYDHEDPA 569 (623)
Q Consensus 490 ~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~es~srg~~~~~~~ 569 (623)
..++. -......++++.+.+...+.+..+. --|++|. ||+.+.|+.+-..+- .+.+.+. ++++
T Consensus 167 ------~~~~~-khiGiy~f~~~~L~~f~~l~~s~lE-~~E~lEq-LR~leng~~I~~~~~------~~~~~~V--Dt~e 229 (238)
T PRK13368 167 ------SARYL-KHVGIYAFRRDVLQQFSQLPETPLE-QIESLEQ-LRALEHGYKIRMVEV------EATSIGV--DTPE 229 (238)
T ss_pred ------CCHHH-EEEEEEEECHHHHHHHHHCCCCHHH-HHHHHHH-HHHHHCCCCEEEEEE------CCCCCCC--CCHH
T ss_conf ------20122-0301122119999998708998567-7770899-999986992679995------9999998--7999
Q ss_pred HH
Q ss_conf 99
Q gi|254780918|r 570 KM 571 (623)
Q Consensus 570 k~ 571 (623)
..
T Consensus 230 Dl 231 (238)
T PRK13368 230 DL 231 (238)
T ss_pred HH
T ss_conf 99
No 162
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=92.85 E-value=0.28 Score=26.15 Aligned_cols=217 Identities=17% Similarity=0.140 Sum_probs=107.4
Q ss_pred CCCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC-CCEEEE
Q ss_conf 7753012136788888169999537745569999987642079751579971489981689999999863088-827997
Q gi|254780918|r 309 DGAQYRTHYMIPNPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYP-NLRVIT 387 (623)
Q Consensus 309 ~~~~~r~~~~~~~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~-~~~~i~ 387 (623)
.+...|... ..|+.-|=| .+.+.+.+.|++|.+.. .-|++||-||-.. +.++....+++ +..++.
T Consensus 11 AG~GsRlg~----~~PK~Lvev---~gr~ii~~~i~~L~~~g---i~e~vvV~~g~~~----~lve~~l~~~~~~~~iv~ 76 (239)
T COG1213 11 AGFGSRLGP----DIPKALVEV---GGREIIYRTIENLAKAG---ITEFVVVTNGYRA----DLVEEFLKKYPFNAKIVI 76 (239)
T ss_pred CCCCCCCCC----CCCCHHHHC---CCEEEHHHHHHHHHHCC---CCEEEEEECCCHH----HHHHHHHHCCCCCEEEEE
T ss_conf 344553479----997144315---88673899999998769---8639999623027----899999851896169996
Q ss_pred ECCCCCCHHHHH-----HHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEE-EEECCCCCCCCCCCEEEE
Q ss_conf 578887338898-----98786148974744058827828168899887742898169953-766467675677870441
Q gi|254780918|r 388 DNTHPFNYSRIN-----NNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGA-RLWYRRKKLWKRSKRLQH 461 (623)
Q Consensus 388 ~~~~~~n~s~~~-----N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~-~ll~~~~~~~~~d~~iqh 461 (623)
+.. |.+.| -.|....+++ ++++|+|+ +.+|..++++++.. -+..+++.- +-.+. .+.+
T Consensus 77 N~~----y~ktN~~~Sl~~akd~~~~~-fii~~sD~-vye~~~~e~l~~a~-~~~li~d~~~~~~~~------~ea~--- 140 (239)
T COG1213 77 NSD----YEKTNTGYSLLLAKDYMDGR-FILVMSDH-VYEPSILERLLEAP-GEGLIVDRRPRYVGV------EEAT--- 140 (239)
T ss_pred CCC----CCCCCCEEEEEEEHHHHCCC-EEEEECCE-EECHHHHHHHHHCC-CCCEEEECCCCCCCC------CCEE---
T ss_conf 898----55577646774543463385-79995787-50689999998475-776789523333556------7506---
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHC
Q ss_conf 32540678656643225655557644222233444441110110204388889871799976876323168899999974
Q gi|254780918|r 462 GGVIMGINNIAGHKNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEA 541 (623)
Q Consensus 462 aG~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~ 541 (623)
.+.-.+|..-...+. ..++.++.-...-++.+.|+.. .+.. .--++.++-....+.
T Consensus 141 --kv~~e~G~i~~igK~-----------------l~e~~~e~iGi~~l~~~i~~~~----~~~~-~e~~~~~~~~~~~~~ 196 (239)
T COG1213 141 --KVKDEGGRIVEIGKD-----------------LTEYDGEDIGIFILSDSIFEDT----YELL-VERSEYDYREVEKEA 196 (239)
T ss_pred --EEEECCCEEEHHCCC-----------------CCCCCCEEEEEEEECHHHHHHH----HHHH-HHHHHHHHHHHHHHH
T ss_conf --998449787621078-----------------5513621653588345787878----9887-655667799999985
Q ss_pred CCEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9819984754999517733677668999999999999999988388
Q gi|254780918|r 542 GYRNVWTPHADLYHDESRTRKYDHEDPAKMIVFQEACQYLQKRWKK 587 (623)
Q Consensus 542 G~r~v~~P~a~v~H~es~srg~~~~~~~k~~~~~~~~~~~~~rW~~ 587 (623)
++..-..- .|.-+. -=++.++|+...+ .++++...|..
T Consensus 197 ~~~~~~~d----i~~~g~-~w~EVDtpeDl~~---ar~~~~~~~~k 234 (239)
T COG1213 197 GLPFTEVD----IHVDGL-FWMEVDTPEDLER---ARKYLVPNIKK 234 (239)
T ss_pred CCCEEEEE----CCCCCC-EEEECCCHHHHHH---HHHHHHHHHHH
T ss_conf 87617851----023685-2486388899999---99999999975
No 163
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=92.64 E-value=0.65 Score=23.88 Aligned_cols=192 Identities=12% Similarity=0.149 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECC-CCCCHHHHHHHHHHHC---CCC
Q ss_conf 745569999987642079751579971489981689999999863088827997578-8873388989878614---897
Q gi|254780918|r 334 NHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNT-HPFNYSRINNNATLHA---KGQ 409 (623)
Q Consensus 334 n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~-~~~n~s~~~N~g~~~a---~ge 409 (623)
++..++.++.+..... ...+ +|+|.-+ |.+..+.. ..+ +..++.... ..-|-.+. --+++.- ..|
T Consensus 25 ~GkpmI~~v~~~a~~~-~~~~-~V~VATd---d~~I~~~~----~~~-g~~~imTs~~h~~GTdRi-~Ea~~~l~~~~~d 93 (248)
T PRK05450 25 GGKPMIVRVYERASKA-SGAD-RVVVATD---DERIADAV----EAF-GGEVVMTSADHPSGTDRI-AEAAAKLGLSDDD 93 (248)
T ss_pred CCCCHHHHHHHHHHHC-CCCC-EEEEEEC---CHHHHHHH----HCC-CCCEEECCCCCCCCHHHH-HHHHHHCCCCCCC
T ss_conf 8969899999999966-8988-2999708---85244353----156-862340464547703899-9999850877786
Q ss_pred EEEEECCCCEEECHHHHHHHHHHHC-CCCEEEEEEE--EECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 4744058827828168899887742-8981699537--664676756778704413254067865664322565555764
Q gi|254780918|r 410 YFCFLNNDTEVINGQWLSEMMGIAS-QPQVGAVGAR--LWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSVP 486 (623)
Q Consensus 410 yilfLn~D~~v~~~~wL~~Ll~~~~-~~~vG~Vg~~--ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~~~~ 486 (623)
+++-+..|-=.++|.-++.++..+. .++..++... +.. ......++ .+ -+++...+.+-+ |...+.+....
T Consensus 94 ~IInvQGDEPli~p~~I~~li~~~~~~~~~~i~tl~~~~~~-~~~~~d~n-~V---Kvv~~~~~~aly-fSRs~IP~~~~ 167 (248)
T PRK05450 94 IVVNVQGDEPLIPPELIDQVAEPLAAHPEADMATLAVPIDD-EEELFNPN-VV---KVVLDKNGYALY-FSRAPIPWGRD 167 (248)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCC-HHHHHCCC-CE---EEEECCCCCEEE-EECCCCCCCCC
T ss_conf 89993598677899999999999985886639999986288-89960888-34---899899998405-54267875444
Q ss_pred CCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEEC
Q ss_conf 42222334444411101102043888898717999768763231688999999749819984
Q gi|254780918|r 487 NYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWT 548 (623)
Q Consensus 487 ~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~ 548 (623)
.... .....+.--. ....++++.+.+.--+.+..+- -.|++|. ||+.+.|+++-..
T Consensus 168 ~~~~---~~~~~~~~hi-Giy~f~~~~L~~f~~l~~s~lE-~~E~lEq-LR~leng~~I~~~ 223 (248)
T PRK05450 168 AADP---TAPTPVYRHI-GIYAYRRGFLRRFVSLPPSPLE-QIESLEQ-LRALENGYRIHVA 223 (248)
T ss_pred CCCC---CCCCCEEEEE-EEEEEHHHHHHHHHHCCCCHHH-HHHHHHH-HHHHHCCCCEEEE
T ss_conf 3212---3555516899-9886009999998746998146-5652699-9999859957999
No 164
>pfam01983 CofC Guanylyl transferase CofC like. Coenzyme F420 is a hydride carrier cofactor that functions during methanogenesis. This family of proteins represents CofC, a nucleotidyl transferase that is involved in coenzyme F420 biosynthesis. CofC has been shown to catalyse the formation of lactyl-2-diphospho-5'-guanosine from 2-phospho-L-lactate and GTP.
Probab=92.60 E-value=0.66 Score=23.85 Aligned_cols=93 Identities=15% Similarity=0.268 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 45569999987642079751579971489981689999999863088827997578887338898987861489747440
Q gi|254780918|r 335 HHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHAKGQYFCFL 414 (623)
Q Consensus 335 ~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a~geyilfL 414 (623)
+.++...++.-++... ....++|| |.|+...++ .....++.++.+...+.| .+.|.++.....+-++++
T Consensus 26 R~~La~~Ml~dVl~al--~~~~v~vv---s~d~~v~~~----a~~~~g~~v~~~~~~gLN--~Av~~a~~~~~~~~v~Iv 94 (217)
T pfam01983 26 RKELLRLMLLDVIDAL--KPVDVLVF---SEDEVVLPS----ALDVLGVEVVVETESDLN--TAVNQAFMAPEEAPVIII 94 (217)
T ss_pred HHHHHHHHHHHHHHHH--HCCCEEEE---ECCHHHHHH----HHHCCCCEEEECCCCCHH--HHHHHHHHHCCCCCEEEE
T ss_conf 9999999999999986--33866999---375887788----886179548734874678--999999972899868997
Q ss_pred CCCCEEECHHHHHHHHHHHCCCCE
Q ss_conf 588278281688998877428981
Q gi|254780918|r 415 NNDTEVINGQWLSEMMGIASQPQV 438 (623)
Q Consensus 415 n~D~~v~~~~wL~~Ll~~~~~~~v 438 (623)
-.|+=.++++-|+.++.....++|
T Consensus 95 ~aDLPli~~~~l~~ll~~~~~~~v 118 (217)
T pfam01983 95 PSDIPLISKEVLKRFLETEGRADV 118 (217)
T ss_pred ECCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 076678998999999983778888
No 165
>pfam03552 Cellulose_synt Cellulose synthase. Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterized genes found in Acetobacter and Agrobacterium sp. More correctly designated as 'cellulose synthase catalytic subunits', plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity.
Probab=91.37 E-value=0.4 Score=25.17 Aligned_cols=109 Identities=17% Similarity=0.245 Sum_probs=64.5
Q ss_pred CCCEEEEECCCCCC-----HHHHHHHHHHH----CCCCEEEEECCCCCC-CCCHHHHHHHHHHHCC--CCCCCCCC----
Q ss_conf 79889998088885-----64899999996----599899997698752-7320799999987324--75542022----
Q gi|254780918|r 123 DSRIKVVFRAKNGH-----ISAASNSAAQL----ATSEWLALLDHDDLL-HPTALYYVADAINNNP--NAEIIYSD---- 186 (623)
Q Consensus 123 d~ri~~~~~~~n~g-----~~~a~N~~l~~----a~Ge~i~~lD~DD~l-~p~~L~~~~~~l~~~p--~~~~iYsD---- 186 (623)
-|++.|+.++++-| -++|+|..++. ..|.||.-||+|-.. .|.++...+-.+. +| +.++.|-.
T Consensus 165 lP~LVYvSREKrP~~~Hh~KAGAMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCfll-D~~~g~~~afVQFPQr 243 (716)
T pfam03552 165 LPRLVYVSREKRPGYDHHKKAGAMNALVRVSAVLTNGPFILNLDCDHYINNSKAIREAMCFMM-DPGLGKKVCYVQFPQR 243 (716)
T ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHC-CCCCCCCEEEEECCCC
T ss_conf 643899964668898631011145778877653127976894346230378257999788710-7877883268858821
Q ss_pred ---CEEECCCCCEEEECCCCCC-CHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf ---2067589836542256678-966741478543145768999997188789
Q gi|254780918|r 187 ---EDKINENQIRSGPYFKYDF-NPELFHVHNMITHLGVYRTETFKKIGGFRE 235 (623)
Q Consensus 187 ---e~~i~~~g~~~~p~fkp~~-~~~~l~s~nyi~~~~~~rr~~~~~iGgf~~ 235 (623)
-++-|.-+.....+|.-.+ ..|-+.+-.|+|.-.+|||.++- |+++
T Consensus 244 F~gi~k~D~Y~n~~~v~fd~~~~GldGlqGP~YvGTGCffRR~alY---G~~P 293 (716)
T pfam03552 244 FDGIDPSDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALY---GYDP 293 (716)
T ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEECCCCEEEEEEEC---CCCC
T ss_conf 3799978777760368886203565556785010355225300103---7898
No 166
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=91.37 E-value=0.91 Score=22.98 Aligned_cols=188 Identities=11% Similarity=0.077 Sum_probs=77.2
Q ss_pred EECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH-------------------HHHHHH---CCCCCEEEE
Q ss_conf 9537745569999987642079751579971489981689999-------------------999863---088827997
Q gi|254780918|r 330 IPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLY-------------------LQKIQK---KYPNLRVIT 387 (623)
Q Consensus 330 Ip~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~-------------------l~~~~~---~~~~~~~i~ 387 (623)
+|..|. ..++..++.+.+. .-. ||++|-+.+.+ ....+ ++.+.. ....+..+.
T Consensus 34 LPi~dk-Pii~~~vee~~~a-GI~--ei~iV~~~~K~-~I~d~F~~~~ele~~L~~~~k~~~l~~~~~i~~~~~~i~~v~ 108 (302)
T PRK13389 34 LPLVDK-PLIQYVVNECIAA-GIT--EIVLVTHSSKN-SIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVR 108 (302)
T ss_pred CEECCE-EHHHHHHHHHHHC-CCC--EEEEEECCCCC-HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 548988-7599999999986-997--89999279841-355634770888888876325777777653035883599986
Q ss_pred ECCCCCCHHHHHHHHHHHCCCC-EEEEECCCCEE------ECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEE
Q ss_conf 5788873388989878614897-47440588278------2816889988774289816995376646767567787044
Q gi|254780918|r 388 DNTHPFNYSRINNNATLHAKGQ-YFCFLNNDTEV------INGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQ 460 (623)
Q Consensus 388 ~~~~~~n~s~~~N~g~~~a~ge-yilfLn~D~~v------~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iq 460 (623)
+ ..+.|.+.+...|-....+| ++++|.+|+ + +..+.+.+|+..+...+..+++.+-+ +| +.
T Consensus 109 Q-~~~~GlGhAV~~A~~~v~depF~VllgD~l-i~~~~~~l~~~~l~~li~~~~~~g~~~I~v~~V--------ed--~s 176 (302)
T PRK13389 109 Q-GLAKGLGHAVLCAHPVVGDEPVAVILPDVI-LDEYESDLSQDNLAEMIRRFDETGHSQIMVEPV--------AD--VT 176 (302)
T ss_pred C-CCCCCHHHHHHHHHHHCCCCCEEEEECCHH-HCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC--------CC--CC
T ss_conf 7-898768999998898629965799936334-135566520568999999986149868999986--------77--63
Q ss_pred ECCEEECCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHH
Q ss_conf 13254067865--6643225655557644222233444441110110204388889871799976876323168899999
Q gi|254780918|r 461 HGGVIMGINNI--AGHKNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRI 538 (623)
Q Consensus 461 haG~v~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~ 538 (623)
.-|++-..+.. .+....... ....|.-. ..+.|+ |++|. -++..++|+-+-..... -...++=+|---.+
T Consensus 177 ~YGVv~~~g~~~~~~~~~~I~~-iVEKP~~e----~aPSnl-Ai~Gr-Yif~p~IF~~L~~~~p~-~~GEiqLTDAi~~l 248 (302)
T PRK13389 177 AYGVVDCKGVELAPGESVPMVG-VVEKPKAD----VAPSNL-AIVGR-YVLSADIWPLLAKTPPG-AGDEIQLTDAIDML 248 (302)
T ss_pred CEEEEECCCCCCCCCCCCCEEE-EEECCCCC----CCCCCE-EEEEE-EEECHHHHHHHHCCCCC-CCCCEEHHHHHHHH
T ss_conf 2447963566445676332245-67437887----898775-78767-88788999999607999-99808499999999
Q ss_pred HHCC
Q ss_conf 9749
Q gi|254780918|r 539 LEAG 542 (623)
Q Consensus 539 ~~~G 542 (623)
.+.+
T Consensus 249 ~~~~ 252 (302)
T PRK13389 249 IEKE 252 (302)
T ss_pred HHHC
T ss_conf 8429
No 167
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=91.06 E-value=0.98 Score=22.79 Aligned_cols=87 Identities=20% Similarity=0.140 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 74556999998764207975157997148998168999999986308882799757888733889898786148974744
Q gi|254780918|r 334 NHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHAKGQYFCF 413 (623)
Q Consensus 334 n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a~geyilf 413 (623)
++..++++.++.+.... .+++||-+.... . . ...++.++.+.....|-.++.-.|++.+.+|++++
T Consensus 24 ~g~~li~~~~~~l~~~~----~~v~vv~~~~~~--~------~--~~~~~~~i~d~~~~~GPl~gi~~~l~~~~~~~~lv 89 (181)
T cd02503 24 GGKPLLEHVLERLKPLV----DEVVISANRDQE--R------Y--ALLGVPVIPDEPPGKGPLAGILAALRAAPADWVLV 89 (181)
T ss_pred CCCCHHHHHHHHHHHHC----CCEEEEECCCHH--H------H--HCCCCEEEECCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 98409999999998646----807999177277--6------6--31798699479978784899999986278775999
Q ss_pred ECCCCEEECHHHHHHHHHHHC
Q ss_conf 058827828168899887742
Q gi|254780918|r 414 LNNDTEVINGQWLSEMMGIAS 434 (623)
Q Consensus 414 Ln~D~~v~~~~wL~~Ll~~~~ 434 (623)
+-.|.=.++++.+..|++.+.
T Consensus 90 ~~~D~P~i~~~~i~~L~~~~~ 110 (181)
T cd02503 90 LACDMPFLPPELLERLLAAAE 110 (181)
T ss_pred EECCCCCCCHHHHHHHHHHHH
T ss_conf 647989888999999999732
No 168
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=90.58 E-value=1.1 Score=22.53 Aligned_cols=190 Identities=12% Similarity=0.173 Sum_probs=95.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCC-CCCHHHHHHHHHHH--CCCCE
Q ss_conf 7455699999876420797515799714899816899999998630888279975788-87338898987861--48974
Q gi|254780918|r 334 NHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTH-PFNYSRINNNATLH--AKGQY 410 (623)
Q Consensus 334 n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~-~~n~s~~~N~g~~~--a~gey 410 (623)
++..++.++.+...... .-+ +|+|.-+ |.+..+. ...+ +..++...+. .-|-.+. .-+++. ++.|+
T Consensus 24 ~G~pmI~~v~~~a~~s~-~~d-~V~VATD---d~eI~~~----~~~~-g~~~imT~~~h~~GTdRi-~ea~~~l~~~~D~ 92 (239)
T cd02517 24 AGKPMIQHVYERAKKAK-GLD-EVVVATD---DERIADA----VESF-GGKVVMTSPDHPSGTDRI-AEVAEKLDADDDI 92 (239)
T ss_pred CCCCHHHHHHHHHHHCC-CCC-EEEEECC---CHHHHHH----HCCC-CCCCCCCCCCCCCCCHHH-HHHHHHCCCCCCE
T ss_conf 99598999999999669-988-4999648---2655533----2147-974010464335621599-9999971998898
Q ss_pred EEEECCCCEEECHHHHHHHHHHHC-CCCEEEEEE--EEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 744058827828168899887742-898169953--76646767567787044132540678656643225655557644
Q gi|254780918|r 411 FCFLNNDTEVINGQWLSEMMGIAS-QPQVGAVGA--RLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSVPN 487 (623)
Q Consensus 411 ilfLn~D~~v~~~~wL~~Ll~~~~-~~~vG~Vg~--~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~~~~~ 487 (623)
++.+..|-=.++|.-++.++..+. .++..++.+ ++-.. .....++. + -+++...+.+-. |...+.+.....
T Consensus 93 iinvQGDePli~p~~I~~~i~~~~~~~~~~v~t~~~~i~~~-~~~~~~n~-V---Kvv~~~~~~aly-fSRs~IP~~~~~ 166 (239)
T cd02517 93 VVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDE-EELFNPNV-V---KVVLDKDGYALY-FSRSPIPYPRDS 166 (239)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCH-HHHCCCCC-E---EEEECCCCCCHH-CCCCCCCCCCCC
T ss_conf 99951875678999999999998528875598740236998-89418996-3---999789885110-334788643456
Q ss_pred CCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECC
Q ss_conf 22223344444111011020438888987179997687632316889999997498199847
Q gi|254780918|r 488 YQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTP 549 (623)
Q Consensus 488 ~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P 549 (623)
.. ....-+. .....++++.+++...+....+- -.|++|. ||+.+.|+.+-..+
T Consensus 167 ~~--~~~~~kh-----iGIy~f~~~~L~~f~~~~~s~lE-~~E~lEq-LR~leng~~I~~~~ 219 (239)
T cd02517 167 SE--DFPYYKH-----IGIYAYRRDFLLRFAALPPSPLE-QIESLEQ-LRALENGYKIKVVE 219 (239)
T ss_pred CC--CCCEEEE-----EEEEEECHHHHHHHHCCCCCHHH-HHHHHHH-HHHHHCCCEEEEEE
T ss_conf 55--5041037-----76556339999998737998257-7760899-99998398068999
No 169
>pfam05045 RgpF Rhamnan synthesis protein F. This family consists of a group of proteins which are related to the Streptococcus rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O polysaccharides of phytopathogenic bacteria and are regarded as pathogenic factors.
Probab=90.42 E-value=1.1 Score=22.44 Aligned_cols=320 Identities=13% Similarity=0.117 Sum_probs=138.7
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCH-HHHHHHHHHH------CCCCEEEEECCCCCCCCCH-HHHHHH
Q ss_conf 9987757806799999998875798899980888856-4899999996------5998999976987527320-799999
Q gi|254780918|r 101 CIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHI-SAASNSAAQL------ATSEWLALLDHDDLLHPTA-LYYVAD 172 (623)
Q Consensus 101 iivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~-~~a~N~~l~~------a~Ge~i~~lD~DD~l~p~~-L~~~~~ 172 (623)
++|-++.-+.+-++.|+++... ++. .+|.|. .+|.-.|+.. ++-|=|+++ .|..+-|-+ |..+-+
T Consensus 2 ~~V~N~~l~~~~~~~l~~~~~~-----~i~-ReN~G~D~~A~~~~~~~~G~e~l~~yDev~l~-NdT~~GPv~~~~~~f~ 74 (498)
T pfam05045 2 IFVSNSELSDESRKRLKDLTDE-----FLQ-RENKGFDVWAYRDGLEFIGFDKLSEYDEVTLM-NDTCFGPIFPFSEMFE 74 (498)
T ss_pred EEEECCCCCHHHHHHHHHHHCC-----EEE-EECCCCCHHHHHHHHHHHCHHHHCCCCEEEEE-CCCEECCCCCHHHHHH
T ss_conf 8998996798999999985160-----798-40588455999999998397876477769996-3642156864799999
Q ss_pred HHHHCCCCCCCCCCCEEECC-CCCEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHC--CCCCCCCCCCC-------
Q ss_conf 98732475542022206758-983654225667896674147854314576899999718--87898773027-------
Q gi|254780918|r 173 AINNNPNAEIIYSDEDKINE-NQIRSGPYFKYDFNPELFHVHNMITHLGVYRTETFKKIG--GFREKFEGAQD------- 242 (623)
Q Consensus 173 ~l~~~p~~~~iYsDe~~i~~-~g~~~~p~fkp~~~~~~l~s~nyi~~~~~~rr~~~~~iG--gf~~~~~~~~D------- 242 (623)
.+++ .++|+.. +.. .+....|+-+...-|+.+.| |+.+||++++..-. .|-+....-.|
T Consensus 75 ~m~~-~~~DFWG-----it~~~~~~~~~~~~~~~~p~HlQS-----yF~~~r~~~~~s~~F~~yW~~~~~~~~~~~~I~~ 143 (498)
T pfam05045 75 EMER-RDCDFWG-----ITNHRAIKPNPFTGTGVLPEHIQS-----YFIAFRNSVLQSKAFRDYWENIPEINSYQDVIDH 143 (498)
T ss_pred HHHC-CCCCEEE-----ECCCCCCCCCCCCCCCCCHHHHHH-----HHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 9603-3797796-----557644678876676766688877-----8988643011688899998438876779999988
Q ss_pred CHH--HHHHHHCCC--------------CCCEEECCCCEEEE-----EECC----CCCCCCCHHHHHHHHHH-------H
Q ss_conf 413--678864248--------------75220068422799-----5338----85338801346899878-------9
Q gi|254780918|r 243 YDL--VLRFLENID--------------LSQIIHIPRVLYHW-----RMHD----NSTAQKIGNKNYAGKAG-------E 290 (623)
Q Consensus 243 ~Dl--~lR~~~~~~--------------~~~i~hip~vLy~~-----R~~~----~s~~~~~~~k~~~~~a~-------~ 290 (623)
|+. .=++...+- ..-+.|....+|++ |..+ .+...+....++..+-- .
T Consensus 144 ~E~~fT~~F~~~G~~~~~~~dt~~~~~~~p~~~~~~~~~~~~~~IlKrr~~F~k~~~~~~~~~~~~~l~~~l~~~t~Yp~ 223 (498)
T pfam05045 144 HETQFTKIFLDLGYSYEVVLDTDKYDSSYPVFLHPDFTYYNRTPILKRRVFFHDVKALDANQIILPRALEYIEENSDYDL 223 (498)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHCCCCCCCCCCCHHHHHCCCHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCH
T ss_conf 89999999987697369995522215668500372655307326764368754404543023115899999986689988
Q ss_pred HHHHHHHHHCCCCCCCCCCC-CCE-----EEE--CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 99999997413343223577-530-----121--3678888816999953774556999998764207975157997148
Q gi|254780918|r 291 RALNEHFQRTGIAAKAVFDG-AQY-----RTH--YMIPNPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDN 362 (623)
Q Consensus 291 ~ai~~~l~R~g~~~~~~~~~-~~~-----r~~--~~~~~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn 362 (623)
..|-+|+.|...++...... -.| .+. -......++|.|++-.+- .++++.+++-+..- ...+.++|--+
T Consensus 224 ~LI~~~~~r~~~p~~l~~n~~l~y~L~~~~~~~~~~~~~~~~kIav~~HvyY-~DLl~e~l~y~~~i--p~~~Dl~ITT~ 300 (498)
T pfam05045 224 SLIVKHVSRTSYPRDLNTNAALLSVLPDKYVKPDSAAVRDDQKIAVHAHVYY-VDMLDEILTAFKNI--PFSYDLIITTD 300 (498)
T ss_pred HHHHHHHHHHCCHHHHHHCCCCCEECCCCCCCCCCCCCCCCCEEEEEEEEEC-HHHHHHHHHHHHHC--CCCCCEEEECC
T ss_conf 9999987753187777523674423562003644333355785999999534-72699999999828--98741899859
Q ss_pred CCCCHHHHHHHHHHHHCCC---CCEEEEECCCCCCHHHHHHHHHH----HCCCCEEEEECCCCEEE-----CHHHHHH--
Q ss_conf 9981689999999863088---82799757888733889898786----14897474405882782-----8168899--
Q gi|254780918|r 363 LSDDSKTFLYLQKIQKKYP---NLRVITDNTHPFNYSRINNNATL----HAKGQYFCFLNNDTEVI-----NGQWLSE-- 428 (623)
Q Consensus 363 ~S~d~~t~~~l~~~~~~~~---~~~~i~~~~~~~n~s~~~N~g~~----~a~geyilfLn~D~~v~-----~~~wL~~-- 428 (623)
. ++..+.+++.-++.+ ++.+..-.+.|--.+... .+++ ..+-||++.++.-=.+. ...|-+.
T Consensus 301 ~---~ek~~~i~~~l~~~~~~~~~~V~vv~NRGRDv~pfL-v~~~~~l~~~~YD~v~hiHtKKS~~~~~~~G~~wr~~l~ 376 (498)
T pfam05045 301 T---DDKKAEIEEILAKRKGAKNAIVRVVQNRGRDMSPLL-ISLKDELVDDRYDLVCRFHTKKSPQADFWAGESFKEELI 376 (498)
T ss_pred C---HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHH-HHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 8---778999999998566777328999057774178899-998877453677489996557476668640579999999
Q ss_pred ------------HHHHH-CCCCEEEEEEEE
Q ss_conf ------------88774-289816995376
Q gi|254780918|r 429 ------------MMGIA-SQPQVGAVGARL 445 (623)
Q Consensus 429 ------------Ll~~~-~~~~vG~Vg~~l 445 (623)
.++.+ ++|.+|+|.|-.
T Consensus 377 ~nLlgs~~~v~~Il~~F~~~p~lGlv~p~~ 406 (498)
T pfam05045 377 DNLLKPRGYADNILAMFEQNPSIGLVIPDI 406 (498)
T ss_pred HHHCCCHHHHHHHHHHHHHCCCEEEECCCH
T ss_conf 972198899999999871098636873872
No 170
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.32 E-value=1.6 Score=21.49 Aligned_cols=101 Identities=12% Similarity=0.078 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCC--CEE
Q ss_conf 745569999987642079751579971489981689999999863088827997578887338898987861489--747
Q gi|254780918|r 334 NHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHAKG--QYF 411 (623)
Q Consensus 334 n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a~g--eyi 411 (623)
++..++++.++.+.... . -+|+||-+.. +.+... .... ..+.++.......|-+...-.|++++.. +.+
T Consensus 24 ~g~pli~~~i~~~~~~~--~-~~i~vv~~~~-~~~~~~----~~~~-~~~~~v~~~~~~~G~~~si~~gl~~~~~~~~~~ 94 (186)
T cd04182 24 DGKPLLRHALDAALAAG--L-SRVIVVLGAE-ADAVRA----ALAG-LPVVVVINPDWEEGMSSSLAAGLEALPADADAV 94 (186)
T ss_pred CCCCHHHHHHHHHHHCC--C-CCEEECCCCC-HHHHHH----HHCC-CCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 97319999999999749--9-8325237740-789999----8547-993675178756785378999999733488768
Q ss_pred EEECCCCEEECHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 44058827828168899887742898169953
Q gi|254780918|r 412 CFLNNDTEVINGQWLSEMMGIASQPQVGAVGA 443 (623)
Q Consensus 412 lfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~ 443 (623)
+++-.|+=.++++-+++|++.+...+-.+|.|
T Consensus 95 lv~~~D~P~i~~~~i~~L~~~~~~~~~~iv~~ 126 (186)
T cd04182 95 LILLADQPLVTAETLRALIDAFREDGAGIVAP 126 (186)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 98437778789999999999997589958999
No 171
>PRK10122 UTP--glucose-1-phosphate uridylyltransferase subunit GalF; Provisional
Probab=88.05 E-value=1.7 Score=21.38 Aligned_cols=191 Identities=12% Similarity=0.111 Sum_probs=81.1
Q ss_pred EECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH-------------------HHHHHHC---CCCCEEEE
Q ss_conf 9537745569999987642079751579971489981689999-------------------9998630---88827997
Q gi|254780918|r 330 IPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLY-------------------LQKIQKK---YPNLRVIT 387 (623)
Q Consensus 330 Ip~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~-------------------l~~~~~~---~~~~~~i~ 387 (623)
+|..| ...++..++.+.+. .-. ||++|-+.+.+ ....+ ++..... .-.+..+.
T Consensus 29 LPv~d-kPii~~~vee~~~a-GI~--eiiiV~~~~k~-~ie~~F~~~~~le~~l~~~~k~~~l~~~~~~~~~gv~i~yv~ 103 (297)
T PRK10122 29 LPIVD-KPMIQYIVDEIVAA-GIK--EIVLVTHASKN-AVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVR 103 (297)
T ss_pred CEECC-EEHHHHHHHHHHHC-CCC--EEEEEECCCCC-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 62898-53699999999987-997--89999179711-577746671888999876117999998875244896499987
Q ss_pred ECCCCCCHHHHHHHHHHHCCCCEEEEECCCCEEECH------HHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEE
Q ss_conf 578887338898987861489747440588278281------68899887742898169953766467675677870441
Q gi|254780918|r 388 DNTHPFNYSRINNNATLHAKGQYFCFLNNDTEVING------QWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQH 461 (623)
Q Consensus 388 ~~~~~~n~s~~~N~g~~~a~geyilfLn~D~~v~~~------~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqh 461 (623)
..++.|.+.+.-.|-....+|-.+.+..|..+... .-|.+|+.......-.+|..+..- .| +..
T Consensus 104 -Q~eplGlGhAV~~A~~~v~depF~VllgD~l~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~~~v~-------~d--~~~ 173 (297)
T PRK10122 104 -QGQPLGLGHSILCARPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRSQVLAKRMP-------GD--LSE 173 (297)
T ss_pred -CCCCCCHHHHHHHHHHHCCCCEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC-------CC--CCC
T ss_conf -79998678999988873499607997266142278641678889999999971499599999957-------87--651
Q ss_pred CCEEECCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHH
Q ss_conf 3254067865--66432256555576442222334444411101102043888898717999768763231688999999
Q gi|254780918|r 462 GGVIMGINNI--AGHKNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRIL 539 (623)
Q Consensus 462 aG~v~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~ 539 (623)
-|++.+-... -+...+... ....|.-. ...+.|. |++| +-++..++|+.+.-.... ....++=+|.-..+.
T Consensus 174 yGVv~~~~~~d~~g~v~~I~~-ivEKP~~P---~~apSnl-ai~G-rYi~~p~IF~~L~~~~p~-~~GEiqLTDAi~~l~ 246 (297)
T PRK10122 174 YSVIQTKEPLDREGKVSRIVE-FIEKPDQP---QTLDSDL-MAVG-RYVLSADIWPELERTQPG-AWGRIQLTDAIAELA 246 (297)
T ss_pred EEEEECCCCCCCCCCEEEEEE-CCCCCCCC---CCCCCCC-EEEE-EEEECHHHHHHHHHCCCC-CCCEEEHHHHHHHHH
T ss_conf 579955655466775333565-14677898---6677773-3778-997287999999708999-998588999999997
Q ss_pred HCC
Q ss_conf 749
Q gi|254780918|r 540 EAG 542 (623)
Q Consensus 540 ~~G 542 (623)
+.+
T Consensus 247 ~~~ 249 (297)
T PRK10122 247 KKQ 249 (297)
T ss_pred CCC
T ss_conf 019
No 172
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=85.89 E-value=2.2 Score=20.65 Aligned_cols=186 Identities=13% Similarity=0.190 Sum_probs=91.0
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 88816999953774556999998764207975157997148998168999999986308882799757888733889898
Q gi|254780918|r 322 PPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNN 401 (623)
Q Consensus 322 ~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~ 401 (623)
++|++-| ++..++...|+.+... ... +|+|+-+.-.+ ....++.........+..+.+ ..+.+-+.+.+.
T Consensus 20 PK~Ll~i-----~gkpli~~~i~~l~~~-gi~--~i~i~~~y~~e-~i~~~~~~~~~~~~~i~~i~e-~~~lGt~gal~~ 89 (220)
T cd06426 20 PKPMLKV-----GGKPILETIIDRFIAQ-GFR--NFYISVNYLAE-MIEDYFGDGSKFGVNISYVRE-DKPLGTAGALSL 89 (220)
T ss_pred CCCCEEE-----CCCHHHHHHHHHHHHC-CCC--EEEEEECCCCH-HHHHHHCCCCCCCCEEEEEEC-CCCCCHHHHHHH
T ss_conf 8103299-----9953999999999983-996--89995014611-323343156657843887214-665557899986
Q ss_pred HHHHCCCCEEEEECCCCEEECHHHHHHHHHHH-CC-CCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCC
Q ss_conf 78614897474405882782816889988774-28-98169953766467675677870441325406786566432256
Q gi|254780918|r 402 ATLHAKGQYFCFLNNDTEVINGQWLSEMMGIA-SQ-PQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHH 479 (623)
Q Consensus 402 g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~-~~-~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~ 479 (623)
+-..- .+.++++|.|+ +.+.+ +..|+... .. .++.++ .+... . ++. .|++..-++.. ....
T Consensus 90 ~~~~~-~~~~iv~~gD~-i~~~~-~~~~~~~~~~~~~~~~~~-~~~~~----~--~~~----~gv~~~~~~~v---~~~~ 152 (220)
T cd06426 90 LPEKP-TDPFLVMNGDI-LTNLN-YEHLLDFHKENNADATVC-VREYE----V--QVP----YGVVETEGGRI---TSIE 152 (220)
T ss_pred HHHCC-CCCEEEECCCE-ECCCC-HHHHHHHHHHCCCCEEEE-EEECC----C--CCC----CCEEEECCCCE---EEEE
T ss_conf 67618-99789977773-04759-999999999749966999-98625----6--877----76599348837---6777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEE
Q ss_conf 555576442222334444411101102043888898717999768763231688999999749819984754999
Q gi|254780918|r 480 KARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLY 554 (623)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~ 554 (623)
..|.. .+ .+.+.+.++.++.|+.+- ... .++-.|+..++.+.|.++...+...-|
T Consensus 153 ----ekp~~--------~~--~~~~Giy~~~~~~~~~i~---~~~---~~~~~d~~~~li~~g~~v~~~~~~~~W 207 (220)
T cd06426 153 ----EKPTH--------SF--LVNAGIYVLEPEVLDLIP---KNE---FFDMPDLIEKLIKEGKKVGVFPIHEYW 207 (220)
T ss_pred ----ECCCC--------CC--CCCEEEEEECHHHHHHCC---CCC---CCCCCHHHHHHHHCCCCEEEEEECCEE
T ss_conf ----66888--------65--233169998999997468---999---445458999999879988999749999
No 173
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=84.13 E-value=2.6 Score=20.15 Aligned_cols=97 Identities=21% Similarity=0.335 Sum_probs=56.1
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECC-CCCCHHHHH
Q ss_conf 8888169999537745569999987642079751579971489981689999999863088827997578-887338898
Q gi|254780918|r 321 NPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNT-HPFNYSRIN 399 (623)
Q Consensus 321 ~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~-~~~n~s~~~ 399 (623)
.++|++.| ++..+++..|+.+.+. .-. +|+||-+-- .... +.+.....++.++.+.. .+.|-+...
T Consensus 19 ~PK~L~~i-----~gkpli~~~i~~l~~~-gi~--~i~iv~gy~-~e~i----~~~~~~~~~i~~i~n~~~~~~g~~~sl 85 (229)
T cd02523 19 RPKCLLEI-----NGKPLLERQIETLKEA-GID--DIVIVTGYK-KEQI----EELLKKYPNIKFVYNPDYAETNNIYSL 85 (229)
T ss_pred CCCCCCEE-----CCEEHHHHHHHHHHHC-CCC--CCEEECCCC-HHHH----HHHHHHCCCCCCEEEEECCCCCHHHHH
T ss_conf 88032179-----9879999999999984-998--536655548-9999----999853136540340002367829999
Q ss_pred HHHHHHCCCCEEEEECCCCEEECHHHHHHHHHH
Q ss_conf 987861489747440588278281688998877
Q gi|254780918|r 400 NNATLHAKGQYFCFLNNDTEVINGQWLSEMMGI 432 (623)
Q Consensus 400 N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~ 432 (623)
..+...-+++ ++++|.|+ +++++.++.+..+
T Consensus 86 ~~a~~~~~~~-~lv~~gD~-i~~~~~~~~~~~~ 116 (229)
T cd02523 86 YLARDFLDED-FLLLEGDV-VFDPSILERLLSS 116 (229)
T ss_pred HHHHHHCCCC-EEEEECCE-ECCHHHHHHHHHC
T ss_conf 9888755898-59995776-5466799999847
No 174
>pfam04666 Glyco_transf_54 N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region. The complex-type of oligosaccharides are synthesized through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (EC:2.4.1.145) catalyses the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very for N-terminal, where there is a signal sequence on all members. For other members the co
Probab=83.67 E-value=2.8 Score=20.03 Aligned_cols=108 Identities=25% Similarity=0.350 Sum_probs=60.4
Q ss_pred CCEEEEE--EC--CCCHHHHHHHHHHHHHCCCCCC--EEEEEECCCCCCHH-HHHHHHHHHHCCC-----CCEEEEECCC
Q ss_conf 8169999--53--7745569999987642079751--57997148998168-9999999863088-----8279975788
Q gi|254780918|r 324 PLVSIII--PT--YNHHHLLKICLESIYHKTTYSS--FEVIIIDNLSDDSK-TFLYLQKIQKKYP-----NLRVITDNTH 391 (623)
Q Consensus 324 P~VSIII--p~--~n~~~~l~~cl~Sl~~~t~y~~--~EiivVdn~S~d~~-t~~~l~~~~~~~~-----~~~~i~~~~~ 391 (623)
..||++| || +....+|..+|+||..+++... --+|||-=+-+|++ .....+.+..+++ +..-|+..+.
T Consensus 54 ~gvslviGIPTV~R~~~sYL~~TL~SLi~~~s~~e~~~~vIVVflad~d~~~~~~v~~~I~~~F~~~i~sGll~VI~pp~ 133 (301)
T pfam04666 54 QGVSLVIGIPTVRRSKQSYLLDTLQSLISGMSEEELEDMVVVVFVADTDPDYVKQVVQNISKKFPKHIDSGLLEVISPPA 133 (301)
T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCHHHHCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCH
T ss_conf 65169995673214865669999999997289999778699999834997999999999998748988628669992573
Q ss_pred C-----------CC---------------HHHHHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHHC
Q ss_conf 8-----------73---------------3889898786148974744058827828168899887742
Q gi|254780918|r 392 P-----------FN---------------YSRINNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIAS 434 (623)
Q Consensus 392 ~-----------~n---------------~s~~~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~ 434 (623)
. +| ||=.++. ....|+|.+-|.+|+ +..|+.++.+-.++.
T Consensus 134 ~yYP~l~~L~~t~gDs~eRV~WRSKQnlDyafLm~Y--a~~~~~YYlqLEDDV-~~~~~f~t~Ik~~~~ 199 (301)
T pfam04666 134 SYYPDLSGLKKTFNDSPERVKWRSKQNLDYAFLMNY--AQNLGTYYLQLEDDV-VAKKGFLTTIKNFAL 199 (301)
T ss_pred HHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCCCCCEEEEECCCC-CCCCCHHHHHHHHHH
T ss_conf 318983323112099677613677666559999998--604480468752552-456418999999999
No 175
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=83.63 E-value=2.8 Score=20.02 Aligned_cols=189 Identities=13% Similarity=0.115 Sum_probs=92.7
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 88816999953774556999998764207975157997148998168999999986308882799757888733889898
Q gi|254780918|r 322 PPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNN 401 (623)
Q Consensus 322 ~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~ 401 (623)
++|++.| ++..+++..|+.+... ... +|+||-+-..+ ...+++ . ..++.++.+. ++.|-+.+...
T Consensus 17 PKpllpi-----~~kpii~~ii~~l~~~-gi~--~i~iv~~~~~e-~i~~~~----~-~~~i~~v~Q~-~~lGta~Av~~ 81 (229)
T cd02540 17 PKVLHPL-----AGKPMLEHVLDAARAL-GPD--RIVVVVGHGAE-QVKKAL----A-NPNVEFVLQE-EQLGTGHAVKQ 81 (229)
T ss_pred CCCCCEE-----CCEEHHHHHHHHHHHC-CCC--EEEEECCCCHH-HHHHHH----C-CCCEEEEEEC-CCCCCHHHHHH
T ss_conf 8415189-----9879999999999976-997--59963576899-999875----4-3872699806-88973789999
Q ss_pred HHHHCC--CCEEEEECCCCEEECHHHHHHHHHHHCCC--CEEEEEEEEECCCCCCCCCCCEEEECCEE-ECCCCCCCCCC
Q ss_conf 786148--97474405882782816889988774289--81699537664676756778704413254-06786566432
Q gi|254780918|r 402 ATLHAK--GQYFCFLNNDTEVINGQWLSEMMGIASQP--QVGAVGARLWYRRKKLWKRSKRLQHGGVI-MGINNIAGHKN 476 (623)
Q Consensus 402 g~~~a~--geyilfLn~D~~v~~~~wL~~Ll~~~~~~--~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v-~g~~~~~~~~~ 476 (623)
+...-. .+.+++++.|+-.+.+.-|.+|+...... ++.+++-+.- .|. .-|++ ..-.|. ..
T Consensus 82 a~~~i~~~~~~~lVl~gD~pli~~~~l~~l~~~~~~~~~~~ti~~~~~~-------~p~----~YG~v~~d~~g~---v~ 147 (229)
T cd02540 82 ALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELE-------DPT----GYGRIIRDGNGK---VL 147 (229)
T ss_pred HHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEC-------CCC----CCCEEEECCCCC---EE
T ss_conf 9874458887299995896453678899999999965996699998604-------876----786799889997---89
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHH-HHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 256555576442222334444411101102043888-89871799976876323168899999974981998
Q gi|254780918|r 477 KHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKK-CFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVW 547 (623)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~-~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~ 547 (623)
.........+.- ...-.+-+| ++.++++ +|+.+.-.....-...|+=+|+--.+.+.|+++-.
T Consensus 148 ~ivEkk~~~~~~-------~~~~~~n~G-iYif~~~~l~~~l~~l~~~~~~gE~~ltD~i~~~i~~g~kv~~ 211 (229)
T cd02540 148 RIVEEKDATEEE-------KAIREVNAG-IYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGLKVAA 211 (229)
T ss_pred EEEECCCCCCCC-------CCCCEEEEE-EEEECHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCCEEE
T ss_conf 999887876543-------454322227-9998599999999847987668878899999999988991899
No 176
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=83.22 E-value=2.9 Score=19.92 Aligned_cols=112 Identities=13% Similarity=0.176 Sum_probs=59.7
Q ss_pred EEEEEECCC--CHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-CEEEEECCC----------C
Q ss_conf 699995377--455699999876420797515799714899816899999998630888-279975788----------8
Q gi|254780918|r 326 VSIIIPTYN--HHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPN-LRVITDNTH----------P 392 (623)
Q Consensus 326 VSIIIp~~n--~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~-~~~i~~~~~----------~ 392 (623)
|.||+.+-| =...+.-++.||++++. .++.+.|+.++-++ +..+.++++...... +..+.-... .
T Consensus 1 ~~~iv~a~d~nY~~~~~v~i~Sll~n~~-~~~~~~il~~~is~-~~~~~l~~l~~~~~~~i~~~~i~~~~~~~~~~~~~~ 78 (246)
T cd00505 1 IAIVIVATGDEYLRGAIVLMKSVLRHRT-KPLRFHVLTNPLSD-TFKAALDNLRKLYNFNYELIPVDILDSVDSEHLKRP 78 (246)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHHCC-CCEEEEEEECCCCH-HHHHHHHHHHHHCCCEEEEEECCCHHHCCHHHHHCC
T ss_conf 9899997887169899999999999599-98499999598999-999999999875380699996473232103454253
Q ss_pred CCHHHHHHHHHHH-C-CCCEEEEECCCCEEECHHHHHHHHHHHC-CCCEEEE
Q ss_conf 7338898987861-4-8974744058827828168899887742-8981699
Q gi|254780918|r 393 FNYSRINNNATLH-A-KGQYFCFLNNDTEVINGQWLSEMMGIAS-QPQVGAV 441 (623)
Q Consensus 393 ~n~s~~~N~g~~~-a-~geyilfLn~D~~v~~~~wL~~Ll~~~~-~~~vG~V 441 (623)
+..++-.-+.+.. - .-|-++.||+|+.| ..+ |++|.+.-. ...+|+|
T Consensus 79 ~~~~ty~Rl~i~~llp~~dkilYLD~Diiv-~~d-i~~L~~~~l~~~~~aav 128 (246)
T cd00505 79 IKIVTLTKLHLPNLVPDYDKILYVDADILV-LTD-IDELWDTPLGGQELAAA 128 (246)
T ss_pred CHHHHHHHHHHHHHCHHHCEEEEECCCEEE-ECC-HHHHHCCCCCCCEEEEE
T ss_conf 416789999999864211548995189587-167-79996055777738996
No 177
>KOG1022 consensus
Probab=83.02 E-value=2.9 Score=19.87 Aligned_cols=218 Identities=18% Similarity=0.180 Sum_probs=106.2
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCE-EEEEECCC---CCCHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 7888881699995377455699999876420797515-79971489---9816899999998630888279975788873
Q gi|254780918|r 319 IPNPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSF-EVIIIDNL---SDDSKTFLYLQKIQKKYPNLRVITDNTHPFN 394 (623)
Q Consensus 319 ~~~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~-EiivVdn~---S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n 394 (623)
++.....-+.|+-|||+.+.|.+.+.-...- |++ +|+||=|+ +..++. +....+--..+....+
T Consensus 438 ik~~~qgFTlim~TYdR~d~L~k~v~~ys~v---PsL~kIlVVWNnq~k~PP~es------~~~~~~VPlr~r~qke--- 505 (691)
T KOG1022 438 IKGHSQGFTLIMLTYDRVDLLKKLVKHYSRV---PSLKKILVVWNNQGKNPPPES------LEPDIAVPLRFRQQKE--- 505 (691)
T ss_pred CCCCCCCEEEEEEHHHHHHHHHHHHHHHHHC---CCCCEEEEEECCCCCCCCHHH------CCCCCCCCEEEEEHHH---
T ss_conf 8874345222320378899999999987508---872249999437899998045------1626776479974111---
Q ss_pred HHHHHHHH--HHHCCCCEEEEECCCCEEECHHHHHHHHH-HHCCCC--EEEEEEEEECCCCCCCCCCCEEEECCEEECCC
Q ss_conf 38898987--86148974744058827828168899887-742898--16995376646767567787044132540678
Q gi|254780918|r 395 YSRINNNA--TLHAKGQYFCFLNNDTEVINGQWLSEMMG-IASQPQ--VGAVGARLWYRRKKLWKRSKRLQHGGVIMGIN 469 (623)
Q Consensus 395 ~s~~~N~g--~~~a~geyilfLn~D~~v~~~~wL~~Ll~-~~~~~~--vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~ 469 (623)
-..+|+= ....+.+-++-+|+||...+++ |+---+ +-+.|+ ||.| |++...+.+.....
T Consensus 506 -NsLnNRF~~~peieT~AVL~IDDDIim~~dd-ldFgf~VWrefPD~lVGF~-pR~H~~t~s~~k~~------------- 569 (691)
T KOG1022 506 -NSLNNRFEPYPEIETEAVLEIDDDIIMPCDD-LDFGFEVWREFPDRLVGFV-PRFHVWTMSYSKWK------------- 569 (691)
T ss_pred -HHHHCCCCCCCCCCCCEEEEECCCEEEECCH-HHHHHHHHHHCCCCEECCC-CCEEECCCCCCHHH-------------
T ss_conf -3330456347430201268852754656503-5788999986865340667-60231144533433-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCHHEEEEEHHHHHHH--------CCC-CHHHHHHHCCHHHHHHHHH
Q ss_conf 65664322565555764422223344444111-0110204388889871--------799-9768763231688999999
Q gi|254780918|r 470 NIAGHKNKHHKARCSVPNYQAFAMHFTHSISA-VTGACMVMSKKCFMHV--------GGF-DEKNTPVVFSDIDLCLRIL 539 (623)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa-vtgacllirr~~f~~i--------GGf-DE~~~~~~~eDvDlclR~~ 539 (623)
+. . .....+|- .|||.++ .+..++-- --| ||. ..+||+-+.+-+.
T Consensus 570 --------y~---s----------ewt~qySMVLtGAAFf-hk~y~~lYt~~mPa~ir~~vDe~---~NCEDIAMNFLiA 624 (691)
T KOG1022 570 --------YE---S----------EWTNQYSMVLTGAAFF-HKKYLDLYTSDMPADIRVFVDEH---MNCEDIAMNFLIA 624 (691)
T ss_pred --------HE---E----------ECCCCEEEEEECHHHH-HHHHHHHHHHCCCCHHHHHHHCC---CCHHHHHHHHHHH
T ss_conf --------03---4----------2388267999425677-78999876203640678865035---6878998888765
Q ss_pred HC-CC-EEEECCCEEEEE-ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 74-98-199847549995-177336776689999999999999999883888414898
Q gi|254780918|r 540 EA-GY-RNVWTPHADLYH-DESRTRKYDHEDPAKMIVFQEACQYLQKRWKKIIEKDPC 594 (623)
Q Consensus 540 ~~-G~-r~v~~P~a~v~H-~es~srg~~~~~~~k~~~~~~~~~~~~~rW~~~~~~Dp~ 594 (623)
.+ |. -+.++|...+-- ..+.+.|.... ....+++..-.+|..+..+.=|.
T Consensus 625 Natg~~aI~Vkp~~~~~~~~~sg~~gls~~-----~~H~~kRS~CInrFv~iyGsMPL 677 (691)
T KOG1022 625 NATGKPAIKVKPRKKFKCPECSGVAGLSND-----NQHMRKRSKCINRFVDIYGSMPL 677 (691)
T ss_pred HCCCCCCEEEECCCCCCCCCCCCCEEECCC-----HHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 125888459847221368654550200353-----17889999999999998567852
No 178
>pfam06306 CgtA Beta-1,4-N-acetylgalactosaminyltransferase (CgtA). This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni.
Probab=82.73 E-value=3 Score=19.80 Aligned_cols=18 Identities=39% Similarity=0.300 Sum_probs=8.6
Q ss_pred ECCCCHHHHHHHHHHHHH
Q ss_conf 537745569999987642
Q gi|254780918|r 331 PTYNHHHLLKICLESIYH 348 (623)
Q Consensus 331 p~~n~~~~l~~cl~Sl~~ 348 (623)
-+.|..-.|+..|+|++-
T Consensus 94 RVKNEa~TLk~SLeSILP 111 (347)
T pfam06306 94 RVKNEAITLKASLESILP 111 (347)
T ss_pred EEECHHHHHHHHHHHHHH
T ss_conf 970412228888987778
No 179
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=82.23 E-value=3.1 Score=19.69 Aligned_cols=88 Identities=15% Similarity=0.070 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCC-CCHHHHHHHHHHHCCCCEEE
Q ss_conf 74556999998764207975157997148998168999999986308882799757888-73388989878614897474
Q gi|254780918|r 334 NHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHP-FNYSRINNNATLHAKGQYFC 412 (623)
Q Consensus 334 n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~-~n~s~~~N~g~~~a~geyil 412 (623)
++..++++.++.+....+ +|+|+-+. ++. ++.+ ..+.+.++.+.... +-.++ .-.|++++++++++
T Consensus 31 ~G~~ll~~~~~~l~~~~~----~v~i~~~~---~~~---~~~~--~~~~~~~i~D~~~~~GPL~G-i~saL~~~~~~~~l 97 (200)
T PRK02726 31 QGVPLLQRVCRIAAACAD----EVYIITPW---PER---YQSL--LPPGCHWLREPPPSGGPLVA-FAQGLPQIKTEWVL 97 (200)
T ss_pred CCEEHHHHHHHHHHHHCC----EEEEECCC---HHH---HHHH--CCCCCEEEECCCCCCCCHHH-HHHHHHHCCCCCEE
T ss_conf 987599999999874188----69996799---788---7752--58885790169988985999-99999856888389
Q ss_pred EECCCCEEECHHHHHHHHHHHC
Q ss_conf 4058827828168899887742
Q gi|254780918|r 413 FLNNDTEVINGQWLSEMMGIAS 434 (623)
Q Consensus 413 fLn~D~~v~~~~wL~~Ll~~~~ 434 (623)
++-.|+=.++++.+++|+..+.
T Consensus 98 v~~cD~P~l~~~~i~~l~~~l~ 119 (200)
T PRK02726 98 LLACDLPKLRVGVLQEWLQQLD 119 (200)
T ss_pred EECCCCCCCCHHHHHHHHHHHH
T ss_conf 9438878889999999999986
No 180
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A; InterPro: IPR013482 In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulphoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. This entry describes proteobacterial MobA (molybdopterin-guanine dinucleotide biosynthesis protein A). MobA synthesises molybdopterin-guanine dinucleotide from molybdopterin and GTP. ; GO: 0003824 catalytic activity, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=81.11 E-value=3.5 Score=19.44 Aligned_cols=92 Identities=12% Similarity=0.147 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEC---CCCCC--HHHHHHHHHHHC-
Q ss_conf 774556999998764207975157997148998168999999986308882799757---88873--388989878614-
Q gi|254780918|r 333 YNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDN---THPFN--YSRINNNATLHA- 406 (623)
Q Consensus 333 ~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~---~~~~n--~s~~~N~g~~~a- 406 (623)
.++..++++.++-|.-|++ +|+|=-|...+ .+.....+..++.+. ..+|. .|. .-.|++++
T Consensus 24 L~g~PL~~hv~~rL~PQv~----~~~IsANRn~~--------~Y~~~g~Gl~V~~D~~DA~~~F~GPLAG-ilagL~~a~ 90 (202)
T TIGR02665 24 LGGKPLIEHVLARLRPQVS----DLAISANRNPE--------RYAQAGFGLPVVPDDVDALADFPGPLAG-ILAGLRWAV 90 (202)
T ss_pred CCCCCHHHHHHHHHCCCHH----HHHHHCCCCHH--------HHHHHCCCCEECCCCCCCCCCCCCCHHH-HHHHHHHHH
T ss_conf 2865289999998435076----66741388977--------8988608973127853435788887689-999999998
Q ss_pred ---CCCEEEEECCCCEEECHHHHHHHHHHHCCCC
Q ss_conf ---8974744058827828168899887742898
Q gi|254780918|r 407 ---KGQYFCFLNNDTEVINGQWLSEMMGIASQPQ 437 (623)
Q Consensus 407 ---~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~ 437 (623)
.++||+++=.|+=.+..|-+++|.+.+...+
T Consensus 91 ~~~~~~~vl~~PCD~P~lP~dLv~RL~~a~~~~~ 124 (202)
T TIGR02665 91 AGTGTDWVLTVPCDTPFLPEDLVARLAAALEAQD 124 (202)
T ss_pred HCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 4469982888228889988789999999975289
No 181
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=80.67 E-value=3.6 Score=19.35 Aligned_cols=114 Identities=15% Similarity=0.175 Sum_probs=60.0
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 88881699995377455699999876420797515799714899816899999998630888279975788873388989
Q gi|254780918|r 321 NPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINN 400 (623)
Q Consensus 321 ~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N 400 (623)
.++|++.| ++..++...|+++.... .. ++++|-+.. ........+......++..++.....+.|-+.+.-
T Consensus 19 ~PK~Ll~v-----~gkp~i~~~i~~l~~~~-~~--~~i~v~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~a~av~ 89 (231)
T cd04183 19 YPKPLIEV-----DGKPMIEWVIESLAKIF-DS--RFIFICRDE-HNTKFHLDESLKLLAPNATVVELDGETLGAACTVL 89 (231)
T ss_pred CCCEEEEE-----CCEEHHHHHHHHHHHCC-CC--EEEEECCHH-HHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHH
T ss_conf 88750179-----99578999999998649-92--468614546-66678887775155897189995699996799999
Q ss_pred HHHHHCCC-CEEEEECCCCEEECHHHHHHHHHHHCC-CCEEEEEEE
Q ss_conf 87861489-747440588278281688998877428-981699537
Q gi|254780918|r 401 NATLHAKG-QYFCFLNNDTEVINGQWLSEMMGIASQ-PQVGAVGAR 444 (623)
Q Consensus 401 ~g~~~a~g-eyilfLn~D~~v~~~~wL~~Ll~~~~~-~~vG~Vg~~ 444 (623)
.+.....+ +-++++|.|+ +...+..+.+..+... ..++++..+
T Consensus 90 ~a~~~i~~~~~~lv~~gD~-~~~~~~~~~~~~~~~~~~~~~v~~~~ 134 (231)
T cd04183 90 LAADLIDNDDPLLIFNCDQ-IVESDLLAFLAAFRERDLDGGVLTFF 134 (231)
T ss_pred HHHHHCCCCCEEEEEECCC-CCCCCHHHHHHHHHHCCCCEEEEEEE
T ss_conf 9998648998099970761-13638899999998569987999999
No 182
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=80.41 E-value=3.6 Score=19.30 Aligned_cols=175 Identities=14% Similarity=0.106 Sum_probs=85.3
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEE--EEECCCCCCHHHH
Q ss_conf 88881699995377455699999876420797515799714899816899999998630888279--9757888733889
Q gi|254780918|r 321 NPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRV--ITDNTHPFNYSRI 398 (623)
Q Consensus 321 ~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~--i~~~~~~~n~s~~ 398 (623)
.++|++.| ++..++...|+.+.+. ... +|+|+-+. ......+++.. ...++.+ ..+...+.+-+.+
T Consensus 20 ~PKpllpv-----~~kpii~~~i~~l~~~-gi~--~iii~~~y-~~~~i~~~~~~---~~~~~~i~~~~e~~~~lGT~~a 87 (221)
T cd06422 20 RPKPLVPV-----AGKPLIDHALDRLAAA-GIR--RIVVNTHH-LADQIEAHLGD---SRFGLRITISDEPDELLETGGG 87 (221)
T ss_pred CCHHEEEE-----CCEEHHHHHHHHHHHC-CCC--EEEEECCC-CHHHHHHHHHC---CCCCCCEEEEEECCCCCCCCHH
T ss_conf 98023799-----9989999999999982-996--79983253-27889998722---5578737997403323665058
Q ss_pred HHHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHH-CC-CCEEEEEEEEECCCCCCCCCCCEEEECCEEE-CCCCCCCCC
Q ss_conf 89878614897474405882782816889988774-28-9816995376646767567787044132540-678656643
Q gi|254780918|r 399 NNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIA-SQ-PQVGAVGARLWYRRKKLWKRSKRLQHGGVIM-GINNIAGHK 475 (623)
Q Consensus 399 ~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~-~~-~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~-g~~~~~~~~ 475 (623)
.-.+......|-++++|.|+ +.+.+ +..|+... .+ ....++-.+.-. ++ ....|++. .-.+..
T Consensus 88 i~~a~~~~~~d~flv~~gD~-l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~g~~~~~~~~~i--- 153 (221)
T cd06422 88 IKKALPLLGDEPFLVVNGDI-LWDGD-LAPLLLLHAWRMDALLLLLPLVRN-------PG--HNGVGDFSLDADGRL--- 153 (221)
T ss_pred HHHHHHHCCCCCEEEEECCE-EECCC-HHHHHHHHHHHCCCCEEEEEEECC-------CC--CCCCCEEEECCCEEE---
T ss_conf 88888634998689980675-78189-899999999706897799998678-------76--557537987686589---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCC
Q ss_conf 22565555764422223344444111011020438888987179997687632316889999997498
Q gi|254780918|r 476 NKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGY 543 (623)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~ 543 (623)
...+. . ...-.+ .+.|.++++++|+.+- +. .++-.|+.-.+.+.|.
T Consensus 154 -~~~~~---~----------~~~~~~-~~G~yif~~~if~~i~---~~----~~~~~d~~~~li~~~~ 199 (221)
T cd06422 154 -RRGGG---G----------AVAPFT-FTGIQILSPELFAGIP---PG----KFSLNPLWDRAIAAGR 199 (221)
T ss_pred -EECCC---C----------CCCEEE-EEEEEEEEHHHHHHCC---CC----CCCHHHHHHHHHHCCC
T ss_conf -97788---8----------774278-8779998189995478---88----7755899999996698
No 183
>pfam01644 Chitin_synth_1 Chitin synthase. This region is found commonly in chitin synthases classes I, II and III. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases.
Probab=79.45 E-value=3.9 Score=19.11 Aligned_cols=17 Identities=12% Similarity=0.218 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHHHHHHH
Q ss_conf 58988899999999982
Q gi|254780918|r 76 YKIKKEWLEMAIESVRS 92 (623)
Q Consensus 76 yn~~~~~L~~~i~Si~~ 92 (623)
||.++..|.+++.+|.+
T Consensus 2 YNEd~~ll~rTL~gv~~ 18 (163)
T pfam01644 2 YNEDEVLFARTMHGVMK 18 (163)
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 88768899999999999
No 184
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=78.05 E-value=4.3 Score=18.85 Aligned_cols=170 Identities=15% Similarity=0.105 Sum_probs=90.8
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 97475898889999999998288997489998775780679999999887579889998088885648999999965998
Q gi|254780918|r 72 IMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQLATSE 151 (623)
Q Consensus 72 iip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l~~a~Ge 151 (623)
++|+-|. ..|.-.|+++.++-.. |++|+- +.......+.+........+|.++...+..|.++++-.+...-.++
T Consensus 26 llpI~gk--Pii~~~l~~L~~~Gv~--eivi~~-~y~~~~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l~~a~~~l~~~ 100 (358)
T COG1208 26 LLPIAGK--PLIEYVLEALAAAGVE--EIVLVV-GYLGEQIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNALDLLGGD 100 (358)
T ss_pred CCEECCE--EHHHHHHHHHHHCCCC--EEEEEC-CCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf 6579986--4599999999987997--899987-7468999999862635698659971687666489999998860799
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCC----C---CE--EECCCC-CEEEECCCCCCCHHHHCCCCCC-CHHH
Q ss_conf 9999769875273207999999873247554202----2---20--675898-3654225667896674147854-3145
Q gi|254780918|r 152 WLALLDHDDLLHPTALYYVADAINNNPNAEIIYS----D---ED--KINENQ-IRSGPYFKYDFNPELFHVHNMI-THLG 220 (623)
Q Consensus 152 ~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYs----D---e~--~i~~~g-~~~~p~fkp~~~~~~l~s~nyi-~~~~ 220 (623)
=++.+..|-+..-+ |..+++...++.....++. + .. ..+.++ .-..-.-||.+ . . ...+.+ +...
T Consensus 101 ~f~v~~GDv~~~~d-l~~l~~~~~~~~~~~~~~~~~~~~~~~~Gvv~~~~~~~~v~~f~ekp~~-~-~-~~~~~in~Giy 176 (358)
T COG1208 101 DFLVLNGDVLTDLD-LSELLEFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEFREKPGP-E-E-PPSNLINAGIY 176 (358)
T ss_pred CEEEEECCCCCCCC-HHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEECCCCCEEEEEEECCCC-C-C-CCCCEEEEEEE
T ss_conf 78999788622468-8999999873566427998752776558639975998489889972667-6-7-88866999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 768999997188789877302741367886424
Q gi|254780918|r 221 VYRTETFKKIGGFREKFEGAQDYDLVLRFLENI 253 (623)
Q Consensus 221 ~~rr~~~~~iGgf~~~~~~~~D~Dl~lR~~~~~ 253 (623)
++.+++++-+.. ...++.. .|++-++++..
T Consensus 177 i~~~~v~~~i~~-~~~~~~~--~~~~~~l~~~~ 206 (358)
T COG1208 177 IFDPEVFDYIEK-GERFDFE--EELLPALAAKG 206 (358)
T ss_pred EECHHHHCCCCC-CCCCCCH--HHHHHHHHHCC
T ss_conf 989789430133-5743214--77899998769
No 185
>pfam03360 Glyco_transf_43 Glycosyltransferase family 43.
Probab=77.87 E-value=4.4 Score=18.81 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=43.5
Q ss_pred CCEEEEEECCCC-CCHHHHHHHHHHHHCCCCCEEEEE-CC----C-----CCCHHHHHHHHHHHCC-------CCEEEEE
Q ss_conf 515799714899-816899999998630888279975-78----8-----8733889898786148-------9747440
Q gi|254780918|r 353 SSFEVIIIDNLS-DDSKTFLYLQKIQKKYPNLRVITD-NT----H-----PFNYSRINNNATLHAK-------GQYFCFL 414 (623)
Q Consensus 353 ~~~EiivVdn~S-~d~~t~~~l~~~~~~~~~~~~i~~-~~----~-----~~n~s~~~N~g~~~a~-------geyilfL 414 (623)
|++-.|||+++. +.+.+.++|++-.-. .+.+.. .+ . +-+ -...|.|++..+ .-++.|.
T Consensus 9 p~l~WIVVEd~~~~t~~v~~lL~~sgl~---y~HL~~~tp~~~~~~~~~~~rg-v~qRn~aL~~ir~~~~~~~~GVVyFA 84 (206)
T pfam03360 9 PNLHWIVVEDGEATTPLVSNILRRTGLP---YTHLVVKTPSGYKDPTWLKPRG-VEQRNLALRWIRQNGEHKLEGVVYFA 84 (206)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCC---EEEECCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 9845999968999988999999974997---3723157852234677755300-89999999999855778876699980
Q ss_pred CCCCEEECHHHHHHHHHH--HCCCCEEEEEEEE
Q ss_conf 588278281688998877--4289816995376
Q gi|254780918|r 415 NNDTEVINGQWLSEMMGI--ASQPQVGAVGARL 445 (623)
Q Consensus 415 n~D~~v~~~~wL~~Ll~~--~~~~~vG~Vg~~l 445 (623)
|+|= +.+-.-+++|... +.-=-||.||...
T Consensus 85 DDdN-tYsl~LF~emR~~k~vg~WPVglvg~~~ 116 (206)
T pfam03360 85 DDDN-TYDLELFEEMRNVKKVGVWPVGLVGGLR 116 (206)
T ss_pred CCCC-CCCHHHHHHHHCCCEEEEEEEEEECCCE
T ss_conf 3898-1149999987521078788644543732
No 186
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=76.96 E-value=4.6 Score=18.65 Aligned_cols=96 Identities=10% Similarity=0.157 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH-CCCCEE
Q ss_conf 7745569999987642079751579971489981689999999863088827997578887338898987861-489747
Q gi|254780918|r 333 YNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLH-AKGQYF 411 (623)
Q Consensus 333 ~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~-a~geyi 411 (623)
+++..++++.++.+.+.. .. +++||-+.. ..+. .+.+.. ...+.++.+..-.-|-+...-.|++. .+.+.+
T Consensus 22 ~~g~~ll~~~i~~~~~~~-~~--~vivv~~~~-~~~~---~~~~~~-~~~~~~v~n~~~~~G~~~si~~gl~~~~~~~~~ 93 (188)
T TIGR03310 22 YKGKTILEHVVDNALRLF-FD--EVILVLGHE-ADEL---VALLAN-HSNITLVHNPQYAEGQSSSIKLGLELPVQSDGY 93 (188)
T ss_pred ECCCCHHHHHHHHHHHCC-CC--CEEEECCCC-HHHH---HHHHCC-CCCCCEECCCCCCCCHHHHHHHHHHCCCCCCEE
T ss_conf 898329999999998569-99--669982783-7899---998626-689626548655678089999999706578859
Q ss_pred EEECCCCEEECHHHHHHHHHHHCCC
Q ss_conf 4405882782816889988774289
Q gi|254780918|r 412 CFLNNDTEVINGQWLSEMMGIASQP 436 (623)
Q Consensus 412 lfLn~D~~v~~~~wL~~Ll~~~~~~ 436 (623)
+++-.|.=.++++.+..|++.+...
T Consensus 94 li~~~D~P~l~~~~i~~L~~~~~~~ 118 (188)
T TIGR03310 94 LFLLGDQPFVTPDIIQLLLEAFALK 118 (188)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 9971887889999999999999857
No 187
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=71.15 E-value=6.5 Score=17.77 Aligned_cols=111 Identities=20% Similarity=0.291 Sum_probs=57.9
Q ss_pred EEEEC-CCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC-CCEEEEECCC----------CCCH
Q ss_conf 99953-7745569999987642079751579971489981689999999863088-8279975788----------8733
Q gi|254780918|r 328 IIIPT-YNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYP-NLRVITDNTH----------PFNY 395 (623)
Q Consensus 328 IIIp~-~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~-~~~~i~~~~~----------~~n~ 395 (623)
|+..+ .|-...+..+|.||++.+....+.+.|+.++-++ +..+.++++..... .+..+.-+.. .+..
T Consensus 3 Iv~~~D~nY~~~~~v~i~Sll~n~~~~~~~i~il~~~ls~-~~~~~l~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~s~ 81 (248)
T cd04194 3 IVFAIDDNYAPYLAVTIKSILANNSKRDYDFYILNDDISE-ENKKKLKELLKKYNSSIEFIKIDNDDFKFFPATTDHISY 81 (248)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCH-HHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCCCCCCH
T ss_conf 9998788689999999999999789988799999489999-999999999986298479998087884234431145279
Q ss_pred HHHHHHHH-HH-CCCCEEEEECCCCEEECHHHHHHHHHHH-CCCCEEEE
Q ss_conf 88989878-61-4897474405882782816889988774-28981699
Q gi|254780918|r 396 SRINNNAT-LH-AKGQYFCFLNNDTEVINGQWLSEMMGIA-SQPQVGAV 441 (623)
Q Consensus 396 s~~~N~g~-~~-a~geyilfLn~D~~v~~~~wL~~Ll~~~-~~~~vG~V 441 (623)
+.-.-+-+ +. ..-+-++.||.|+.| ..+ |++|-..- ...-+|||
T Consensus 82 ~~y~Rl~i~~~lp~~~kvlYLD~D~iv-~~d-l~~L~~~dl~~~~~aav 128 (248)
T cd04194 82 ATYYRLLIPDLLPDYDKVLYLDADIIV-LGD-LSELFDIDLGDNLLAAV 128 (248)
T ss_pred HHHHHHHHHHHHHHCCEEEEEECCEEE-CCC-HHHHHHCCCCCCEEEEE
T ss_conf 999999999973313669997088787-278-89997067789779999
No 188
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=70.86 E-value=6.6 Score=17.73 Aligned_cols=87 Identities=8% Similarity=0.143 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCC-HHHHHHHHH---HHCCCCEE
Q ss_conf 55699999876420797515799714899816899999998630888279975788873-388989878---61489747
Q gi|254780918|r 336 HHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFN-YSRINNNAT---LHAKGQYF 411 (623)
Q Consensus 336 ~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n-~s~~~N~g~---~~a~geyi 411 (623)
..++++.++.+..+.+ +|+|+-|.+.. +.. . ...++.+...+.| .++ ...|+ ..+..+++
T Consensus 15 ~tLlerv~~~l~~~~~----~V~vv~~~~~~---------~~~-~-~~~vi~D~~pg~GPL~G-i~~gL~~a~~~~~~~v 78 (178)
T PRK00576 15 TTLVEHVVGIVGQRCA----PVFVMAAPGQP---------LPE-L-PAPVLRDEVRGLGPLPA-TGRGLRAAAEAGARLA 78 (178)
T ss_pred CCHHHHHHHHHHHHCC----EEEEECCCCCC---------CCC-C-CCCEECCCCCCCCCHHH-HHHHHHHHHHCCCCCE
T ss_conf 2599999999986589----89998899876---------656-8-99886058999785899-9999999986587818
Q ss_pred EEECCCCEEECHHHHHHHHHHHCCCCE
Q ss_conf 440588278281688998877428981
Q gi|254780918|r 412 CFLNNDTEVINGQWLSEMMGIASQPQV 438 (623)
Q Consensus 412 lfLn~D~~v~~~~wL~~Ll~~~~~~~v 438 (623)
+++-.|+=.+++++++.|.+.+...+.
T Consensus 79 ~v~acDmP~l~~~lv~~L~~~~~~~~~ 105 (178)
T PRK00576 79 FVCAVDMPYLTPELIDDLARPAVRTDA 105 (178)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 997457888999999999987544798
No 189
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=70.01 E-value=6.8 Score=17.62 Aligned_cols=108 Identities=19% Similarity=0.296 Sum_probs=58.4
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE-EECCCCCCHHHHHH
Q ss_conf 88816999953774556999998764207975157997148998168999999986308882799-75788873388989
Q gi|254780918|r 322 PPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVI-TDNTHPFNYSRINN 400 (623)
Q Consensus 322 ~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i-~~~~~~~n~s~~~N 400 (623)
++|++-| ++..+++..|+.+.+. ... +|+|+-+--.+ ...++++....+. ++.+. .....+.|-+.+.-
T Consensus 22 PKpLlpv-----~gkpli~~~i~~l~~~-gi~--~iii~~~y~~~-~i~~~~~~~~~~~-~~~i~~~~e~~~lGtagal~ 91 (233)
T cd06425 22 PKPLVEF-----CNKPMIEHQIEALAKA-GVK--EIILAVNYRPE-DMVPFLKEYEKKL-GIKITFSIETEPLGTAGPLA 91 (233)
T ss_pred CCCCCEE-----CCEEHHHHHHHHHHHC-CCC--CCCCHHHHHHH-HHHHHHHHHHHHC-CCEEEECCCCCCCCCHHHHH
T ss_conf 8301089-----9986999999999985-997--32101123577-9999998777743-96056522576667216999
Q ss_pred HHHHHCC--CCEEEEECCCCEEECHHHHHHHHHHHC-C-CCEEEE
Q ss_conf 8786148--974744058827828168899887742-8-981699
Q gi|254780918|r 401 NATLHAK--GQYFCFLNNDTEVINGQWLSEMMGIAS-Q-PQVGAV 441 (623)
Q Consensus 401 ~g~~~a~--geyilfLn~D~~v~~~~wL~~Ll~~~~-~-~~vG~V 441 (623)
.+..... .+-++++|.|+ +.+ .-+.+|+.+.. . .++.++
T Consensus 92 ~a~~~i~~~~~~flVlngD~-~~~-~~l~~~~~~h~~~~~~~ti~ 134 (233)
T cd06425 92 LARDLLGDDDEPFFVLNSDV-ICD-FPLAELLDFHKKHGAEGTIL 134 (233)
T ss_pred HHHHHHCCCCCCEEEECCCH-HCC-HHHHHHHHHHHHCCCCEEEE
T ss_conf 99998468998689977832-102-03699999998558984999
No 190
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=65.68 E-value=8.4 Score=17.08 Aligned_cols=216 Identities=12% Similarity=0.122 Sum_probs=91.6
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHH-------------------HHHHHC--C
Q ss_conf 8881699995377455699999876420797515799714899816899999-------------------998630--8
Q gi|254780918|r 322 PPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYL-------------------QKIQKK--Y 380 (623)
Q Consensus 322 ~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l-------------------~~~~~~--~ 380 (623)
++|++-| ++...++..|+.+.+. ... +|+|+-+.-.+ ...+++ +..... .
T Consensus 22 PKpLlpi-----~gkPii~~~i~~l~~~-Gi~--~iii~~~~~~~-~I~~~f~~~~~~~~~l~~~~k~~~~~~~~~~~~~ 92 (267)
T cd02541 22 PKEMLPI-----VDKPVIQYIVEEAVAA-GIE--DIIIVTGRGKR-AIEDHFDRSYELEETLEKKGKTDLLEEVRIISDL 92 (267)
T ss_pred CCCCCEE-----CCEEHHHHHHHHHHHC-CCC--EEEEEEECCHH-HHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCC
T ss_conf 8436489-----9998699999999986-998--89999124666-6244506658899998526856555554224789
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCEEE-CHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEE
Q ss_conf 88279975788873388989878614897474405882782-81688998877428981699537664676756778704
Q gi|254780918|r 381 PNLRVITDNTHPFNYSRINNNATLHAKGQYFCFLNNDTEVI-NGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRL 459 (623)
Q Consensus 381 ~~~~~i~~~~~~~n~s~~~N~g~~~a~geyilfLn~D~~v~-~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~i 459 (623)
..+..+.+ +++.|.+.+.-.+......|-++++|.|+... ...-+.+|+.........+++....... ..
T Consensus 93 ~~i~~~~e-~~~lGtggai~~a~~~~~~~~flv~~gD~l~~~~~~~l~~li~~~~~~~~~~~~~~~v~~~--------~~ 163 (267)
T cd02541 93 ANIHYVRQ-KEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASVIAVEEVPPE--------DV 163 (267)
T ss_pred CEEEEEEC-CCCCCHHHHHHHCCCCCCCCCEEEEECCEEEECCCHHHHHHHHHHHHHCCEEEEEEEECCC--------CC
T ss_conf 55999977-8988767898721010499867999689888537506689999997308726899996866--------78
Q ss_pred EECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHH
Q ss_conf 41325406786566432256555576442222334444411101102043888898717999768763231688999999
Q gi|254780918|r 460 QHGGVIMGINNIAGHKNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRIL 539 (623)
Q Consensus 460 qhaG~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~ 539 (623)
...|++-.-.. .+...+.. .....|... ....++ +. ..|-++++++|+.+-..... ....++-.|+--.+.
T Consensus 164 ~~yGvv~~~~~-~~~~~~i~-~~~EKP~~~----~~~s~l-~~-~GiYi~~~~i~~~i~~~~~~-~~~e~~l~d~i~~li 234 (267)
T cd02541 164 SKYGIVKGEKI-DGDVFKVK-GLVEKPKPE----EAPSNL-AI-VGRYVLTPDIFDILENTKPG-KGGEIQLTDAIAKLL 234 (267)
T ss_pred CCCCEEEECCC-CCCEEEEE-EEEECCCCC----CCCCCE-EE-EEEEEECHHHHHHHHHCCCC-CCCCCCHHHHHHHHH
T ss_conf 73643896677-87068888-764068876----798531-66-34499889998789728999-998330779999998
Q ss_pred HCCCEEEECCCEEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 7498199847549995177336776689999999
Q gi|254780918|r 540 EAGYRNVWTPHADLYHDESRTRKYDHEDPAKMIV 573 (623)
Q Consensus 540 ~~G~r~v~~P~a~v~H~es~srg~~~~~~~k~~~ 573 (623)
+.| ++...+.--.| .|.-+|+....
T Consensus 235 ~~~-~v~~~~~~g~W--------~DiGtp~~y~~ 259 (267)
T cd02541 235 EEE-PVYAYVFEGKR--------YDCGNKLGYLK 259 (267)
T ss_pred HCC-CEEEEEECCEE--------EECCCHHHHHH
T ss_conf 579-96999859888--------95799899999
No 191
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type; InterPro: IPR011835 This family consists of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; GO: 0009011 starch synthase activity, 0009250 glucan biosynthetic process.
Probab=64.67 E-value=8.8 Score=16.96 Aligned_cols=109 Identities=15% Similarity=0.229 Sum_probs=72.1
Q ss_pred CCCCCEEEEE--ECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHH--HCCCCCEEE-EECCCCCCH
Q ss_conf 8888169999--53774556999998764207975157997148998168999999986--308882799-757888733
Q gi|254780918|r 321 NPPPLVSIII--PTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQ--KKYPNLRVI-TDNTHPFNY 395 (623)
Q Consensus 321 ~~~P~VSIII--p~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~--~~~~~~~~i-~~~~~~~n~ 395 (623)
+..|++.+|= .---+.+++..+|.-++++.++ ..+||+ |+-|++..+.|.+++ .++|+...+ ....++ +
T Consensus 324 ~~~Pl~~~isRL~~QKG~Dl~~~a~~~ll~~~~~--~Qlv~l--G~Gdp~le~~l~~la~~~~~p~~~~~~~~yde~--L 397 (517)
T TIGR02095 324 DDVPLFGVISRLVEQKGVDLLLAALPELLELGDF--GQLVVL--GTGDPELEEALRELADHERYPGKVRVIIGYDEA--L 397 (517)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCC--EEEEEE--ECCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH--H
T ss_conf 8853799982256244278999999999711796--689997--048879999999999996378948999625879--9
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHH--HHCCCCEEEEEEE
Q ss_conf 889898786148974744058827828168899887--7428981699537
Q gi|254780918|r 396 SRINNNATLHAKGQYFCFLNNDTEVINGQWLSEMMG--IASQPQVGAVGAR 444 (623)
Q Consensus 396 s~~~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~--~~~~~~vG~Vg~~ 444 (623)
|+.. .|..|+++ +=+-. +|-=|.+|.+ +-.-|=|-.||+.
T Consensus 398 Ah~i-----yAgaD~~l-mPSrF---EPCGL~Ql~amRYGt~PiVr~tGGL 439 (517)
T TIGR02095 398 AHRI-----YAGADFFL-MPSRF---EPCGLTQLYAMRYGTVPIVRRTGGL 439 (517)
T ss_pred HHHH-----HHCCCEEE-CCCCC---CCCHHHHHHHHHCCCCEEEECCCCC
T ss_conf 9989-----72377688-07855---7312579989734995387158895
No 192
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=64.10 E-value=9 Score=16.90 Aligned_cols=47 Identities=21% Similarity=0.305 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHH-CCCCEEEEECCCCEEECHHHHHHHHHHHCCCC-EEEE
Q ss_conf 887338898987861-48974744058827828168899887742898-1699
Q gi|254780918|r 391 HPFNYSRINNNATLH-AKGQYFCFLNNDTEVINGQWLSEMMGIASQPQ-VGAV 441 (623)
Q Consensus 391 ~~~n~s~~~N~g~~~-a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~-vG~V 441 (623)
.++||++.. -.+. -+-+-+++||+|+. +..| |++|-+.-.... +|||
T Consensus 98 S~lny~Rfy--lp~l~p~l~kviyLD~DvI-V~~D-l~~L~~~dl~~~~~gAV 146 (257)
T cd06429 98 SLLNFARFY--LPELFPKLEKVIYLDDDVV-VQKD-LTELWNTDLGGGVAGAV 146 (257)
T ss_pred CHHHHHHHH--HHHHCCCCCEEEEEECCEE-ECCC-HHHHHHCCCCCCEEEEE
T ss_conf 447789998--8876547675999858988-8576-89996076899757876
No 193
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=60.59 E-value=10 Score=16.51 Aligned_cols=101 Identities=14% Similarity=0.194 Sum_probs=55.5
Q ss_pred EECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-CE-EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 95377455699999876420797515799714899816899999998630888-27-99757888733889898786148
Q gi|254780918|r 330 IPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPN-LR-VITDNTHPFNYSRINNNATLHAK 407 (623)
Q Consensus 330 Ip~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~-~~-~i~~~~~~~n~s~~~N~g~~~a~ 407 (623)
+|.-| ..+++..|+.+... ... ||+|+-++........++++....... .. ......++.|-+.+.-..-..-+
T Consensus 26 lpi~n-~P~i~y~l~~l~~~-G~~--~i~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~gT~~aLr~~~~~i~ 101 (214)
T cd04198 26 LPVAN-KPMIWYPLDWLEKA-GFE--DVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLRHIRKKIK 101 (214)
T ss_pred CEECC-EEHHHHHHHHHHHC-CCC--EEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 68999-97499999999986-998--899995753599999999970456677628999657987871999999985189
Q ss_pred CCEEEEECCCCEEECHHHHHHHHHHHCCCC
Q ss_conf 974744058827828168899887742898
Q gi|254780918|r 408 GQYFCFLNNDTEVINGQWLSEMMGIASQPQ 437 (623)
Q Consensus 408 geyilfLn~D~~v~~~~wL~~Ll~~~~~~~ 437 (623)
+|+ +++|.|+ + +.--|++|+++....+
T Consensus 102 ~df-lvl~gD~-i-~~i~l~~ll~~Hr~~~ 128 (214)
T cd04198 102 KDF-LVLSCDL-I-TDLPLIELVDLHRSHD 128 (214)
T ss_pred CCE-EEECCCE-E-ECCCHHHHHHHHHHHC
T ss_conf 998-9985998-3-6688899999999709
No 194
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=60.46 E-value=10 Score=16.49 Aligned_cols=96 Identities=9% Similarity=0.064 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCC---CCE
Q ss_conf 74556999998764207975157997148998168999999986308882799757888733889898786148---974
Q gi|254780918|r 334 NHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHAK---GQY 410 (623)
Q Consensus 334 n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a~---gey 410 (623)
++..+++++++..... ... +++||-. ..+.+.......+. ...++.++.+..-..|.+...-.|++++. .+.
T Consensus 24 ~g~~ll~~~~~~~~~~-~~~--~vvVV~g-~~~~~~~~~~~~~~-~~~~~~~v~n~~~~~G~~sSi~~Gl~~~~~~~~d~ 98 (190)
T TIGR03202 24 GETTLGSASLKTALSS-RLS--KVIVVIG-EKYAHLSWLDPYLL-ADERIMLVCCRDACEGQAHSLKCGLRKAEAMGADA 98 (190)
T ss_pred CCCCHHHHHHHHHHHC-CCC--EEEEECC-CHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCE
T ss_conf 9911999999999866-998--1999818-71888876678763-34874999689865460799999999743668896
Q ss_pred EEEECCCCEEECHHHHHHHHHHHC
Q ss_conf 744058827828168899887742
Q gi|254780918|r 411 FCFLNNDTEVINGQWLSEMMGIAS 434 (623)
Q Consensus 411 ilfLn~D~~v~~~~wL~~Ll~~~~ 434 (623)
++|+-.|.=.++++-+..|++.+.
T Consensus 99 ~li~l~D~P~l~~~~i~~L~~~~~ 122 (190)
T TIGR03202 99 VVILLADQPFLTADVINALLALAK 122 (190)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 999648977889999999999998
No 195
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=60.42 E-value=7.7 Score=17.30 Aligned_cols=38 Identities=32% Similarity=0.375 Sum_probs=27.6
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHH
Q ss_conf 8816999953774556999998764207975157997148998168
Q gi|254780918|r 323 PPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSK 368 (623)
Q Consensus 323 ~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~ 368 (623)
.|+|-+.|- |+...|+.|=.|=.+++ |.||||| |+||.
T Consensus 129 derv~~~i~--DG~~fl~~~Gasdv~~~----fDVIIvD--stDPv 166 (284)
T TIGR00417 129 DERVDLAID--DGFKFLRDTGASDVEKK----FDVIIVD--STDPV 166 (284)
T ss_pred CCEEEEEEC--CCHHHHHHCCCCCCCCC----CCEEEEE--CCCCC
T ss_conf 880358982--51798976152222121----4479972--77895
No 196
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=56.21 E-value=12 Score=16.05 Aligned_cols=72 Identities=11% Similarity=0.220 Sum_probs=41.0
Q ss_pred HHHHHHH--CCCCCEEEEECCCCCCHHHHHHHHHHHCCCC-EEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 9999863--0888279975788873388989878614897-47440588278281688998877428981699537
Q gi|254780918|r 372 YLQKIQK--KYPNLRVITDNTHPFNYSRINNNATLHAKGQ-YFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGAR 444 (623)
Q Consensus 372 ~l~~~~~--~~~~~~~i~~~~~~~n~s~~~N~g~~~a~ge-yilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ 444 (623)
.++.+.. ...++..++. .++.|...+.-.|-....+| |.++|-+|+..-.+..+.+|+....+-+..++|..
T Consensus 86 ~L~~v~~i~~~~~i~~vRQ-~e~~GLGhAVl~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~y~~~g~svi~v~ 160 (291)
T COG1210 86 LLEEVRSIPPLVTISFVRQ-KEPLGLGHAVLCAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIGVE 160 (291)
T ss_pred HHHHHHHCCCCCEEEEEEC-CCCCCHHHHHHHHHHHCCCCCEEEEECCEEECCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9999972357753999865-87676017888535432898569981772632780699999999998599279999
No 197
>pfam03808 Glyco_tran_WecB Glycosyl transferase WecB/TagA/CpsF family.
Probab=53.01 E-value=14 Score=15.73 Aligned_cols=93 Identities=13% Similarity=0.196 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH--HHHHHCCCCEE
Q ss_conf 7455699999876420797515799714899816899999998630888279975788873388989--87861489747
Q gi|254780918|r 334 NHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINN--NATLHAKGQYF 411 (623)
Q Consensus 334 n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N--~g~~~a~geyi 411 (623)
++.+++...++-.. + .+..|.++ |++++......+.+.+++|++.++-.....|+-..... .-+..++.|+|
T Consensus 32 ~G~dl~~~ll~~~~-~---~~~~v~ll--G~~~~~~~~~~~~l~~~yP~l~i~g~~~g~f~~~e~~~i~~~I~~~~~div 105 (172)
T pfam03808 32 AGTDLIPALLERAA-E---RGKRVFLL--GGKPGVLEKAAARLRARYPGLRIVGTHDGYFSPEEEEAIIEAINASGPDLL 105 (172)
T ss_pred CHHHHHHHHHHHHH-H---CCCEEEEE--ECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 85999999999998-6---49838998--088899999999999887995599987999986899999999984599999
Q ss_pred EEECCCCEEECHHHHHHHHHHHC
Q ss_conf 44058827828168899887742
Q gi|254780918|r 412 CFLNNDTEVINGQWLSEMMGIAS 434 (623)
Q Consensus 412 lfLn~D~~v~~~~wL~~Ll~~~~ 434 (623)
|+-=.+ +-++-|+.++.....
T Consensus 106 -~vglG~-PkQE~~~~~~~~~~~ 126 (172)
T pfam03808 106 -FVGLGA-PKQEKWIARNRARLP 126 (172)
T ss_pred -EEECCC-CHHHHHHHHHHHHCC
T ss_conf -995698-177999999998779
No 198
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=52.15 E-value=14 Score=15.65 Aligned_cols=195 Identities=14% Similarity=0.206 Sum_probs=87.7
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCC-CCCEEEEECCCCCCHHHHHH
Q ss_conf 88816999953774556999998764207975157997148998168999999986308-88279975788873388989
Q gi|254780918|r 322 PPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKY-PNLRVITDNTHPFNYSRINN 400 (623)
Q Consensus 322 ~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~-~~~~~i~~~~~~~n~s~~~N 400 (623)
++|+|-| ++...+...|+.+.+..... +|+++.. -.+.....++....... ..+.++.+ ..+.|-+.+.-
T Consensus 22 PKpllpv-----~gkPiI~~~i~~l~~~~gi~--~i~i~~~-~~~~~~~~~~~~~~~~~~~~i~~~~e-~~~lGtagal~ 92 (257)
T cd06428 22 PKPLFPV-----AGKPMIHHHIEACAKVPDLK--EVLLIGF-YPESVFSDFISDAQQEFNVPIRYLQE-YKPLGTAGGLY 92 (257)
T ss_pred CCCCCEE-----CCEEEHHHHHHHHHHHCCCC--EEEEECC-CCHHHHHHHHHCCCCCCCCCEEEEEC-CCCCCHHHHHH
T ss_conf 8442579-----99954199999999747984--8999805-75799999874234336960599864-76667367899
Q ss_pred HHHHH---CCCCEEEEECCCCEEECHHHHHHHHHHHCC-CCE-EEEEEEEECCCCCCCCCCCEEEECCEEE-CCCCCCCC
Q ss_conf 87861---489747440588278281688998877428-981-6995376646767567787044132540-67865664
Q gi|254780918|r 401 NATLH---AKGQYFCFLNNDTEVINGQWLSEMMGIASQ-PQV-GAVGARLWYRRKKLWKRSKRLQHGGVIM-GINNIAGH 474 (623)
Q Consensus 401 ~g~~~---a~geyilfLn~D~~v~~~~wL~~Ll~~~~~-~~v-G~Vg~~ll~~~~~~~~~d~~iqhaG~v~-g~~~~~~~ 474 (623)
.+... ...|.++++|.|+ +.+-+ +..|++.... ... .+++... +......-|++. ..++ +.
T Consensus 93 ~~~~~i~~~~~~~~lv~~gD~-l~~~d-l~~l~~~h~~~~~~~ti~~~~v---------~~~~~s~fGvvv~~~~~--~~ 159 (257)
T cd06428 93 HFRDQILAGNPSAFFVLNADV-CCDFP-LQELLEFHKKHGASGTILGTEA---------SREQASNYGCIVEDPST--GE 159 (257)
T ss_pred HHHHHHHCCCCCEEEEECCCC-CCCCC-HHHHHHHHHHCCCCEEEEEEEC---------CCCCCCCEEEEEEECCC--CC
T ss_conf 999997348997699988850-03878-9999999997799869999987---------82136540289997899--95
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCC-----H--------H---HHHHHCCHHHHHHHH
Q ss_conf 32256555576442222334444411101102043888898717999-----7--------6---876323168899999
Q gi|254780918|r 475 KNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFD-----E--------K---NTPVVFSDIDLCLRI 538 (623)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfD-----E--------~---~~~~~~eDvDlclR~ 538 (623)
...+.. .|... ..+ -+.+.+.++.+++|+.+...- | . .-...+ +.|..-++
T Consensus 160 i~~f~E----KP~~~------~s~--lin~G~Yvf~~~if~~i~~~~~~~~~e~~~~d~~~~~~~~~~~~~-e~dvlp~l 226 (257)
T cd06428 160 VLHYVE----KPETF------VSD--LINCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAEVIRL-EQDVLTPL 226 (257)
T ss_pred EEEEEE----CCCCC------CCC--EEEEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEE-CHHHHHHH
T ss_conf 999998----89998------888--089999999889999997518454674101343333466644400-03267999
Q ss_pred HHCCCEEEECCCE
Q ss_conf 9749819984754
Q gi|254780918|r 539 LEAGYRNVWTPHA 551 (623)
Q Consensus 539 ~~~G~r~v~~P~a 551 (623)
.+.|.-..|.-..
T Consensus 227 ~~~g~l~~y~~~g 239 (257)
T cd06428 227 AGSGKLYVYKTDD 239 (257)
T ss_pred HHCCCEEEEECCC
T ss_conf 8579889993898
No 199
>KOG1467 consensus
Probab=51.49 E-value=15 Score=15.58 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=41.7
Q ss_pred EEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 995377455699999876420797515799714899816899999998630888279975
Q gi|254780918|r 329 IIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITD 388 (623)
Q Consensus 329 IIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~ 388 (623)
+|.||+....+...|.- ++..-++|.|+|||..+.- |-+..++.+...+-++.++.-
T Consensus 362 viltyg~s~vV~~ill~--A~~~~k~frVvVVDSRP~~-EG~~~lr~Lv~~GinctYv~I 418 (556)
T KOG1467 362 VLLTYGSSSVVNMILLE--AKELGKKFRVVVVDSRPNL-EGRKLLRRLVDRGINCTYVLI 418 (556)
T ss_pred EEEEECCHHHHHHHHHH--HHHHCCCEEEEEEECCCCC-CHHHHHHHHHHCCCCEEEEEE
T ss_conf 89995561899999999--9973666489998079875-347999999975987079986
No 200
>KOG3765 consensus
Probab=51.46 E-value=15 Score=15.58 Aligned_cols=159 Identities=16% Similarity=0.118 Sum_probs=75.0
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECC--EEECC
Q ss_conf 8873388989878614897474405882782816889988774289816995376646767567787044132--54067
Q gi|254780918|r 391 HPFNYSRINNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGG--VIMGI 468 (623)
Q Consensus 391 ~~~n~s~~~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG--~v~g~ 468 (623)
.|+|. +.|.|-+.|.++|++..|.|..+ +.+.-+.+...+.+-.-|...-+|+-+......++..+-+.- +...+
T Consensus 177 YP~Nl--~RNvAr~ga~t~~~l~sD~dm~~-S~gl~~~~~~~~~ql~~~~~~~vlvi~~FE~~~~~~~~P~~k~eL~~~~ 253 (386)
T KOG3765 177 YPFNL--MRNVARKGANTDYMLMSDIDMVP-SYGLADMLKKILNQLDDGKKKKVLVIPAFETDLPNALFPHNKDELLVLL 253 (386)
T ss_pred CCHHH--HHHHHHHHCCCCCEEEEEEEEEE-CCCHHHHHHHHHHHHHCCCCCEEEEEEEHHCCCCCCCCCCCHHHHHHHH
T ss_conf 74688--89999850688818988300124-2324888999999860466647999510002554431668899999998
Q ss_pred -CCCCCCCCC--CCCCCCCCCCCCCC-------------CCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHH
Q ss_conf -865664322--56555576442222-------------33444441110110204388889871799976876323168
Q gi|254780918|r 469 -NNIAGHKNK--HHKARCSVPNYQAF-------------AMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDI 532 (623)
Q Consensus 469 -~~~~~~~~~--~~~~~~~~~~~~~~-------------~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDv 532 (623)
.+.+ .+|. .++.....+++..+ ......+|. .-....+ +.--+||++++.+++-.
T Consensus 254 ~~~~~-~~Fh~~~~~~~h~~~n~~~w~~~s~~s~~~~~~~v~~~~~~E----p~~vl~~----~~p~yd~ry~~~g~~~~ 324 (386)
T KOG3765 254 CNGTA-RPFHHKYFPICHEGTNLSEWVNHGNRSLEHTVYLVAYRNSWE----PQVVLHR----EDPAYDERYFPLGHNKQ 324 (386)
T ss_pred HCCCC-CCCEECCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCC----CEEECCC----CCCCHHHHHCCCCCCHH
T ss_conf 61770-422022456566689821004567766532200221114775----1897147----88515666173553137
Q ss_pred HHHHHHHHCCCEEEECCCEEEEEECCCCC
Q ss_conf 89999997498199847549995177336
Q gi|254780918|r 533 DLCLRILEAGYRNVWTPHADLYHDESRTR 561 (623)
Q Consensus 533 DlclR~~~~G~r~v~~P~a~v~H~es~sr 561 (623)
-.-..+-.+||.....+.+.++|.+.+.-
T Consensus 325 s~~y~lc~~~Y~f~vl~~~f~vHk~~~~~ 353 (386)
T KOG3765 325 SQVYTLCGAEYEFLVLSLAFTVHKGLKEW 353 (386)
T ss_pred HHHHHHHHCCCEEEECCCCEEEECCCCCC
T ss_conf 79999986277015425321665276545
No 201
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=50.25 E-value=15 Score=15.46 Aligned_cols=88 Identities=17% Similarity=0.179 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 74556999998764207975157997148998168999999986308882799757888733889898786148974744
Q gi|254780918|r 334 NHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHAKGQYFCF 413 (623)
Q Consensus 334 n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a~geyilf 413 (623)
|+..+++..++-+..+.+ +++|.-+...+ .+. . ..+.++.+....+|=-++.-.|++++.++++++
T Consensus 27 ~g~~lie~v~~~L~~~~~----~vvi~~~~~~~--------~~~-~-~g~~vv~D~~~~~GPL~Gi~~al~~~~~~~~~v 92 (192)
T COG0746 27 NGRPLIEHVIDRLRPQVD----VVVISANRNQG--------RYA-E-FGLPVVPDELPGFGPLAGILAALRHFGTEWVLV 92 (192)
T ss_pred CCEEHHHHHHHHHHCCCC----EEEEECCCCHH--------HHH-C-CCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 982899999998740188----79997687342--------443-1-698575478888887899999998579875999
Q ss_pred ECCCCEEECHHHHHHHHHHHCC
Q ss_conf 0588278281688998877428
Q gi|254780918|r 414 LNNDTEVINGQWLSEMMGIASQ 435 (623)
Q Consensus 414 Ln~D~~v~~~~wL~~Ll~~~~~ 435 (623)
+--|+=.+.++-++.|...+..
T Consensus 93 ~~~D~P~i~~~lv~~l~~~~~~ 114 (192)
T COG0746 93 LPCDMPFIPPELVERLLSAFKQ 114 (192)
T ss_pred EECCCCCCCHHHHHHHHHHHCC
T ss_conf 8167787899999999986234
No 202
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=50.04 E-value=15 Score=15.44 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=19.4
Q ss_pred HHHHHHHHHCC--CCEEEEECCCCEEECHHHHHHHHHHHCCCCE
Q ss_conf 89898786148--9747440588278281688998877428981
Q gi|254780918|r 397 RINNNATLHAK--GQYFCFLNNDTEVINGQWLSEMMGIASQPQV 438 (623)
Q Consensus 397 ~~~N~g~~~a~--geyilfLn~D~~v~~~~wL~~Ll~~~~~~~v 438 (623)
...+.+++.+. ++-++++-.|+=.+++.-|+.++..+...++
T Consensus 78 ~al~~a~~~~~~~~~~vlii~aDlP~l~~~~l~~~l~~~~~~~v 121 (195)
T TIGR03552 78 NALNAALAEAREPGGAVLILMADLPLLTPRELKRLLAAATEGDV 121 (195)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 99999999987389938996588788999999999984444897
No 203
>pfam05704 Caps_synth Capsular polysaccharide synthesis protein. This family consists of several capsular polysaccharide proteins. Capsular polysaccharide (CPS) is a major virulence factor in Streptococcus pneumoniae.
Probab=48.81 E-value=16 Score=15.33 Aligned_cols=27 Identities=26% Similarity=0.642 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 74556999998764207975157997148
Q gi|254780918|r 334 NHHHLLKICLESIYHKTTYSSFEVIIIDN 362 (623)
Q Consensus 334 n~~~~l~~cl~Sl~~~t~y~~~EiivVdn 362 (623)
|..++++.|++|+.... ++++||+++.
T Consensus 60 ~aP~~Vk~c~~s~~~~~--~~~~vi~l~~ 86 (279)
T pfam05704 60 NAPEIVKKCIKSVKKNA--PGYEVILLTK 86 (279)
T ss_pred HCHHHHHHHHHHHHHHC--CCCEEEECCH
T ss_conf 24599999999999878--9984998464
No 204
>pfam05060 MGAT2 N-acetylglucosaminyltransferase II (MGAT2). UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II (EC 2.4.1.143) (GnT II/MGAT2) is a Golgi resident enzyme that catalyses an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides. Mutations in the MGAT2 gene lead to congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors.
Probab=48.77 E-value=16 Score=15.32 Aligned_cols=194 Identities=16% Similarity=0.189 Sum_probs=91.8
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE--------CCCC----
Q ss_conf 1699995377455699999876420797515799714899816899999998630888279975--------7888----
Q gi|254780918|r 325 LVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITD--------NTHP---- 392 (623)
Q Consensus 325 ~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~--------~~~~---- 392 (623)
.|-|||-.+|+.++|+..|+||.+...-.+. ++|+-..--++|..++++++. +-.+.-|.. +.-|
T Consensus 32 ~~viVvqVHnR~~YL~~li~SL~~a~gI~~~-LLIfSHD~~~~ein~lv~~Id--FC~V~QIF~PyS~ql~P~~FPG~dP 108 (357)
T pfam05060 32 HVVIVVQVHNRPQYLRLLIESLRKAKGISET-LLIFSHDGYFPEINDIVQSID--FCQVKQIFYPYSIQLFPNEFPGVDP 108 (357)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHCCCCCE-EEEEECCCCHHHHHHHHHHCC--CEEEEEEECCCCHHCCCCCCCCCCC
T ss_conf 7799999888279999999999875472315-899966677288999986406--0146788615640017887999881
Q ss_pred --------------------------CCH-----HH-------HHHHH---HHHCC--CCEEEEECCCCEEECHHHHHHH
Q ss_conf --------------------------733-----88-------98987---86148--9747440588278281688998
Q gi|254780918|r 393 --------------------------FNY-----SR-------INNNA---TLHAK--GQYFCFLNNDTEVINGQWLSEM 429 (623)
Q Consensus 393 --------------------------~n~-----s~-------~~N~g---~~~a~--geyilfLn~D~~v~~~~wL~~L 429 (623)
++| +. ..|.. ++..+ .-+++||-.|-.+ .||++.-|
T Consensus 109 ~DCpr~i~k~~A~~~~C~na~~PD~yGhyRea~ftq~KHHWWWk~n~V~d~l~~t~~~~G~vlflEEDHyv-apDf~~~l 187 (357)
T pfam05060 109 NDCPRDIKKDDAIETGCNNAEYPDQYGHYREAKFTQLKHHWWWKMNFVWDGLEETKGHDGHVLFLEEDHYL-APDAYHVL 187 (357)
T ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC-CHHHHHHH
T ss_conf 01433367778987058788897434772567632005578888887886621036776308998256542-67399999
Q ss_pred HHHH-CC----CCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 8774-28----981699537664676756778704413254067865664322565555764422223344444111011
Q gi|254780918|r 430 MGIA-SQ----PQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSVPNYQAFAMHFTHSISAVTG 504 (623)
Q Consensus 430 l~~~-~~----~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~savtg 504 (623)
.... .. |+..++. ++... . ...+........... .....+|
T Consensus 188 ~lm~~~k~~~Cp~C~ils-------------------------LG~y~-~-~~~~~~~~~~~ev~~-W~SskHN------ 233 (357)
T pfam05060 188 QLMQNLKPEKCPDCYALS-------------------------LGPYD-K-SRGEGWDSLVAEVMG-WVSPKHN------ 233 (357)
T ss_pred HHHHHHCCCCCCCCCEEE-------------------------CCCCC-C-CCCCCCCCCEEEEEC-CCCCCCC------
T ss_conf 999873603499777774-------------------------23444-5-677666543367733-5466655------
Q ss_pred HEEEEEHHHHHHHCCCCHHHHHHHCCHH--HHHHHH-----HHCCCEEEECCCEEEEEECC
Q ss_conf 0204388889871799976876323168--899999-----97498199847549995177
Q gi|254780918|r 505 ACMVMSKKCFMHVGGFDEKNTPVVFSDI--DLCLRI-----LEAGYRNVWTPHADLYHDES 558 (623)
Q Consensus 505 acllirr~~f~~iGGfDE~~~~~~~eDv--DlclR~-----~~~G~r~v~~P~a~v~H~es 558 (623)
-.|++.|++|.+|-+--++|= .|.|- |+.|-. ....+.++..-..+|+|.+.
T Consensus 234 mGma~nR~~w~kI~~Ca~~FC--~yDDYNWDWsLq~~s~~Cl~~~l~vl~~~~PRvfH~G~ 292 (357)
T pfam05060 234 MGMAFNRTVWRKIHGCAEEFC--TYDDYNWDWTLQATSAPCLPKPLKVLVPRGPRVFHFGE 292 (357)
T ss_pred CEEEECHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCEEEEEEC
T ss_conf 236874999999999999748--87557514426763201048765897615860787004
No 205
>pfam01501 Glyco_transf_8 Glycosyl transferase family 8. This family includes enzymes that transfer sugar residues to donor molecules. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. This family includes Lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, and glycogenin glucosyltransferase.
Probab=47.47 E-value=17 Score=15.20 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHCCCC-CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECC-CC--------CCHHHHH--HH-H
Q ss_conf 55699999876420797-51579971489981689999999863088827997578-88--------7338898--98-7
Q gi|254780918|r 336 HHLLKICLESIYHKTTY-SSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNT-HP--------FNYSRIN--NN-A 402 (623)
Q Consensus 336 ~~~l~~cl~Sl~~~t~y-~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~-~~--------~n~s~~~--N~-g 402 (623)
...+..++.||++.+.- .++.+.++.++.++ +.++.++++......+..+.... .. ..++.+. -+ .
T Consensus 11 ~~~~~v~i~Sl~~n~~~~~~~~i~i~~~~is~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ty~Rl~i 89 (244)
T pfam01501 11 VLGAGVLIKSLLQHNSDPLHLLFYILTDDVSE-ENREKLNALGSQYSEVIVLYFSDSETLLKQLLLKKYWSLLNYARLYL 89 (244)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCH-HHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 99999999999996899876799998899999-99999999886548448985054454310112224366999999999
Q ss_pred HHH-CCCCEEEEECCCCEEECHHHHHHHHH
Q ss_conf 861-48974744058827828168899887
Q gi|254780918|r 403 TLH-AKGQYFCFLNNDTEVINGQWLSEMMG 431 (623)
Q Consensus 403 ~~~-a~geyilfLn~D~~v~~~~wL~~Ll~ 431 (623)
.+. .+-+-+++||.|+.| ..+ +++|..
T Consensus 90 ~~llp~~~kvlYLD~D~iv-~~d-i~~L~~ 117 (244)
T pfam01501 90 ADLFPKYDKILYLDADIIV-LGD-LDELFD 117 (244)
T ss_pred HHHHHCCCEEEEEECCEEE-ECC-HHHHHC
T ss_conf 8860122569997189677-268-799955
No 206
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=47.31 E-value=17 Score=15.18 Aligned_cols=95 Identities=15% Similarity=0.257 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEE-CCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 745569999987642079751579971-4899816899999998630888279975788873388989878614897474
Q gi|254780918|r 334 NHHHLLKICLESIYHKTTYSSFEVIII-DNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHAKGQYFC 412 (623)
Q Consensus 334 n~~~~l~~cl~Sl~~~t~y~~~EiivV-dn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a~geyil 412 (623)
++..+++.+++.+... ...+ +|||+ .+...|.. +..++.+. ++.+.+...... ..+. ..+++....++++
T Consensus 22 ~~~~~i~~~i~r~k~~-~~~~-~IivaTs~~~~Dd~----l~~~~~~~-~i~~frGs~~dv-l~R~-~~a~~~~~~d~iv 92 (233)
T cd02518 22 GGKPLLEHLLDRLKRS-KLID-EIVIATSTNEEDDP----LEALAKKL-GVKVFRGSEEDV-LGRY-YQAAEEYNADVVV 92 (233)
T ss_pred CCCCHHHHHHHHHHHC-CCCC-EEEEEECCCCCCHH----HHHHHHHC-CEEEEECCCCHH-HHHH-HHHHHHCCCCEEE
T ss_conf 9957999999999966-8988-49998178652269----99999748-489995783058-8999-9998715788899
Q ss_pred EECCCCEEECHHHHHHHHHHHCCCC
Q ss_conf 4058827828168899887742898
Q gi|254780918|r 413 FLNNDTEVINGQWLSEMMGIASQPQ 437 (623)
Q Consensus 413 fLn~D~~v~~~~wL~~Ll~~~~~~~ 437 (623)
-+..|.=.++|..++.++..+...+
T Consensus 93 ri~gD~P~idp~~id~~i~~~~~~~ 117 (233)
T cd02518 93 RITGDCPLIDPEIIDAVIRLFLKSG 117 (233)
T ss_pred EECCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 9768777589899999999985079
No 207
>TIGR01141 hisC histidinol-phosphate aminotransferase; InterPro: IPR005861 The biosynthesis of histidine is a central metabolic process in organisms ranging from bacteria to yeast and plants. The seventh step in the synthesis of histidine within eubacteria is carried out by a pyridoxal-5'-phosphate (PLP)-dependent l-histidinol phosphate aminotransferase (HisC, 2.6.1.9 from EC). HisC is a dimeric enzyme with a mass of approximately 80 kDa. Like most PLP-dependent enzymes, each HisC monomer consists of two domains, a larger PLP-binding domain having an alpha/beta/alpha topology, and a smaller domain. An N-terminal arm contributes to the dimerization of the two monomers . ; GO: 0004400 histidinol-phosphate transaminase activity, 0000105 histidine biosynthetic process.
Probab=46.54 E-value=12 Score=16.10 Aligned_cols=129 Identities=8% Similarity=0.039 Sum_probs=59.4
Q ss_pred HHHHHHHCCC---CHHHHHHHHHHHH--HCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH
Q ss_conf 8999852379---9889999999986--2245897899974758988899999999982889974899987757806799
Q gi|254780918|r 39 REWSSLFHDT---SPQFTKKILQNIS--QWQNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETV 113 (623)
Q Consensus 39 ~~W~~~~~~~---~~~~~~~~~~~~~--~~~~~P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~ 113 (623)
-.||...+.+ +++..+.+.+.+. ....=| +....-|+++|.......-..-+|++--+||.+ -..
T Consensus 30 ~ikL~sNEnP~gp~~~~~~~~~~~l~~a~l~RYP---------dp~~~~L~~~lA~~~~~~v~~eqi~~GGnGsDe-~I~ 99 (377)
T TIGR01141 30 VIKLNSNENPYGPPEKAKEALRAELKEAKLHRYP---------DPDPAELKQALAKYLGKKVDPEQILLGGNGSDE-IID 99 (377)
T ss_pred CEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC---------CCCHHHHHHHHHHHHCCCCCCCCEEEECCCHHH-HHH
T ss_conf 2141367889988889999999998508786798---------986689999999982889871403784156068-999
Q ss_pred HHHHHHHHHCCC-EEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCC-CCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 999998875798-8999808888564899999996599899997698-7527320799999987324755420
Q gi|254780918|r 114 SLLKKYANMDSR-IKVVFRAKNGHISAASNSAAQLATSEWLALLDHD-DLLHPTALYYVADAINNNPNAEIIY 184 (623)
Q Consensus 114 ~~l~~~~~~d~r-i~~~~~~~n~g~~~a~N~~l~~a~Ge~i~~lD~D-D~l~p~~L~~~~~~l~~~p~~~~iY 184 (623)
-++..+.+ |. -.++..+..-+.+ ..+.-+.-++.-.+-+-+++ ..... ..+..+ .....+.+||
T Consensus 100 ~l~raf~~--PGk~~~l~~~Pty~mY-~~~A~~~g~~~~~~~~~~~~~~~~d~---~~~~~a-~~~~~~kLvF 165 (377)
T TIGR01141 100 LLIRAFLE--PGKDAVLVPPPTYSMY-EISAKIHGAEVKKVPLDEDADGQLDL---EDILVA-AIDEKPKLVF 165 (377)
T ss_pred HHHHHHCC--CCCCEEEECCCCHHHH-HHHHHHCCCEEEEEECCCCCCCCCCH---HHHHHH-HHHCCCCEEE
T ss_conf 99998527--6654577617750036-76553207147997405676675553---789999-8626940899
No 208
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase; InterPro: IPR005771 Uridine 5'-triphosphate:glucose-1-phosphate uridylyltransferase (uridine diphosphoglucose pyrophosphorylase, 2.7.7.9 from EC) is responsible for the synthesis of UDP-glucose, a key compound in the biosynthesis of polysaccharides. Glucose is fermented through the glycolysis step to pyruvate, which in turn is converted to lactate. The glycolytic intermediate glucose 6-phosphate is converted to glucose 1-phosphate by phosphoglucomutase activity, and this metabolite is subsequently converted to UDP-glucose by UDP-glucose pyrophosphorylase (GalU) activity. ; GO: 0003983 UTP:glucose-1-phosphate uridylyltransferase activity, 0006011 UDP-glucose metabolic process.
Probab=46.21 E-value=18 Score=15.08 Aligned_cols=74 Identities=12% Similarity=0.178 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCC-CCCHHHHHHHHHHHCCC--CEEEEECCCCEEECHH----HHHHHHHHHCCCCEEE
Q ss_conf 899999998630888279975788-87338898987861489--7474405882782816----8899887742898169
Q gi|254780918|r 368 KTFLYLQKIQKKYPNLRVITDNTH-PFNYSRINNNATLHAKG--QYFCFLNNDTEVINGQ----WLSEMMGIASQPQVGA 440 (623)
Q Consensus 368 ~t~~~l~~~~~~~~~~~~i~~~~~-~~n~s~~~N~g~~~a~g--eyilfLn~D~~v~~~~----wL~~Ll~~~~~~~vG~ 440 (623)
+.++-.+++...+-++..|++... |.|.|=.| ++..=| +|.++|=||+..-... .|.+|+....+-+..+
T Consensus 82 ~lL~~v~~I~~~~~~i~yvRQke~kGLGhAvL~---a~~~vGdEpFaV~LgDdi~~~~~~D~~~~Lkqm~~~Y~~~g~s~ 158 (270)
T TIGR01099 82 ELLKEVRKISNLNANIFYVRQKEQKGLGHAVLC---ARPLVGDEPFAVLLGDDIVVSEEPDLQEALKQMIDLYEKYGCSI 158 (270)
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHH---CCCCCCCCCEEEEECCEEEECCCCCHHHHHHHHHHHHHHHCCEE
T ss_conf 899999986269972899813888855127543---52125888606763526563588754689999999998638817
Q ss_pred EEEE
Q ss_conf 9537
Q gi|254780918|r 441 VGAR 444 (623)
Q Consensus 441 Vg~~ 444 (623)
||=.
T Consensus 159 iaV~ 162 (270)
T TIGR01099 159 IAVE 162 (270)
T ss_pred EEEE
T ss_conf 8886
No 209
>KOG1111 consensus
Probab=45.29 E-value=18 Score=14.99 Aligned_cols=102 Identities=20% Similarity=0.298 Sum_probs=53.7
Q ss_pred CEEEEEEC---CC-CHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 16999953---77-455699999876420797515799714899816899999998630888279975788873388989
Q gi|254780918|r 325 LVSIIIPT---YN-HHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINN 400 (623)
Q Consensus 325 ~VSIIIp~---~n-~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N 400 (623)
.+.|++.+ || +.++|...|.++.++ +|+.++||+-||...-+..+.++++.... ++..+ ..-+. .+.
T Consensus 195 i~~ivv~sRLvyrKGiDll~~iIp~vc~~--~p~vrfii~GDGPk~i~lee~lEk~~l~~-rV~~l--G~v~h--~~V-- 265 (426)
T KOG1111 195 IITIVVASRLVYRKGIDLLLEIIPSVCDK--HPEVRFIIIGDGPKRIDLEEMLEKLFLQD-RVVML--GTVPH--DRV-- 265 (426)
T ss_pred EEEEEEEEEEEECCCHHHHHHHHHHHHHC--CCCEEEEEECCCCCCCHHHHHHHHHHCCC-CEEEE--CCCCH--HHH--
T ss_conf 06999974111124267899999999735--98736999568865021999999850048-05886--14661--788--
Q ss_pred HHHHHCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEE
Q ss_conf 878614897474405882782816889988774289816995
Q gi|254780918|r 401 NATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVG 442 (623)
Q Consensus 401 ~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg 442 (623)
.--.++|++ |||.-. ++..--.+++.| .-+.-+|.
T Consensus 266 -r~vl~~G~I--FlntSl---TEafc~~ivEAa-ScGL~VVs 300 (426)
T KOG1111 266 -RDVLVRGDI--FLNTSL---TEAFCMVIVEAA-SCGLPVVS 300 (426)
T ss_pred -HHHHHCCCE--EECCHH---HHHHHHHHHHHH-HCCCEEEE
T ss_conf -888763857--962078---888899999987-07977997
No 210
>COG2957 Peptidylarginine deiminase and related enzymes [Amino acid transport and metabolism]
Probab=44.98 E-value=18 Score=15.02 Aligned_cols=32 Identities=19% Similarity=0.535 Sum_probs=19.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 99995377455699999876420797515799714
Q gi|254780918|r 327 SIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIID 361 (623)
Q Consensus 327 SIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVd 361 (623)
.||+|+|+..... ..++ ++++. .|+.|||=|+
T Consensus 294 avIvP~y~D~nD~-~a~~-~L~~~-fP~reVVGVp 325 (346)
T COG2957 294 AVIVPQYDDPNDA-LALD-VLQQA-FPGREVVGVP 325 (346)
T ss_pred EEEEECCCCCCHH-HHHH-HHHHH-CCCCEEECCC
T ss_conf 1896305896338-9999-99976-8997375653
No 211
>TIGR01618 phage_P_loop phage nucleotide-binding protein; InterPro: IPR006505 These sequences represent an uncharacterised family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of these proteins is unknown..
Probab=44.29 E-value=19 Score=14.90 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=32.5
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHC-C-CCCCEEEEEECCCCC
Q ss_conf 881699995377455699999876420-7-975157997148998
Q gi|254780918|r 323 PPLVSIIIPTYNHHHLLKICLESIYHK-T-TYSSFEVIIIDNLSD 365 (623)
Q Consensus 323 ~P~VSIIIp~~n~~~~l~~cl~Sl~~~-t-~y~~~EiivVdn~S~ 365 (623)
.|=|.||+...+...-++.-++.+.+. . .-.+|+.||+||=|.
T Consensus 52 ~~nvdiim~~~d~~~~~~~~~e~~~~~~~~~~~~Y~niViDNis~ 96 (229)
T TIGR01618 52 DENVDIIMADLDDEKPIQEMVEFYKELQNIQAEEYDNIVIDNISE 96 (229)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCHHHCCCEEEEECHHH
T ss_conf 998338998606998478999999997322534576589814278
No 212
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=44.28 E-value=19 Score=14.89 Aligned_cols=94 Identities=12% Similarity=0.151 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHHHHHCC-CCEE
Q ss_conf 745569999987642079751579971489981689999999863088-82799757888733889898786148-9747
Q gi|254780918|r 334 NHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYP-NLRVITDNTHPFNYSRINNNATLHAK-GQYF 411 (623)
Q Consensus 334 n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~-~~~~i~~~~~~~n~s~~~N~g~~~a~-geyi 411 (623)
++...+..||+.+.+.. .-+ +|+||-+.... +..+.+..... .+.++. ++-......-.|++... .++|
T Consensus 30 ~gkpil~~sl~~f~~~~-~i~-~IvvV~~~~~~----~~~~~~~~~~~~~i~~v~---GG~tR~~Sv~ngL~~l~~~~~V 100 (228)
T PRK00155 30 GGKPILEHTLEAFLAHP-AID-EIIVVVPPDDT----EYAKLLLAKFDKRIKVVA---GGAERQDSVLNGLQALPDDDWV 100 (228)
T ss_pred CCEEHHHHHHHHHHCCC-CCC-EEEEEECCHHH----HHHHHHHHHCCCCEEEEC---CCHHHHHHHHHHHHHHCCCCEE
T ss_conf 95699999999997599-989-79999576269----999999874498579976---9703999999999984039979
Q ss_pred EEECCCCEEE-CHHHHHHHHHHHCCCC
Q ss_conf 4405882782-8168899887742898
Q gi|254780918|r 412 CFLNNDTEVI-NGQWLSEMMGIASQPQ 437 (623)
Q Consensus 412 lfLn~D~~v~-~~~wL~~Ll~~~~~~~ 437 (623)
++-|. +.++ +++.+++++..+...+
T Consensus 101 lIHDa-ARP~is~~~i~~li~~~~~~~ 126 (228)
T PRK00155 101 LVHDA-ARPFLTPDDIDRLIEAAEEYG 126 (228)
T ss_pred EEECC-CCCCCCHHHHHHHHHHHHHCC
T ss_conf 99706-676899999999999998469
No 213
>TIGR00232 tktlase_bact transketolase; InterPro: IPR005478 Transketolase (EC 2.2.1.1) (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. This group includes two proteins from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. ; GO: 0004802 transketolase activity.
Probab=44.28 E-value=19 Score=14.89 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=14.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99757888733889898786148
Q gi|254780918|r 385 VITDNTHPFNYSRINNNATLHAK 407 (623)
Q Consensus 385 ~i~~~~~~~n~s~~~N~g~~~a~ 407 (623)
+|+..-+.|+-++++|--+.+..
T Consensus 410 Yi~~GvREfaMgAI~NGiAlhGa 432 (675)
T TIGR00232 410 YIHYGVREFAMGAIMNGIALHGA 432 (675)
T ss_pred EEEEEEEECHHHHHHHHHHHHCC
T ss_conf 48873230447899999998358
No 214
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=44.15 E-value=19 Score=14.88 Aligned_cols=120 Identities=15% Similarity=0.101 Sum_probs=58.2
Q ss_pred CCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 75301213678888816999953774556999998764207975157997148998168999999986308882799757
Q gi|254780918|r 310 GAQYRTHYMIPNPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDN 389 (623)
Q Consensus 310 ~~~~r~~~~~~~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~ 389 (623)
+..-|.....|+ ..+.| ++...+..|++.+.... .- -+|+||-+.+.-..+..+++.+......+.++. .
T Consensus 11 G~G~R~~~~~pK--Qf~~l-----~gkpil~~sl~~f~~~~-~i-~~Ivvv~~~~~~~~~~~~~~~~~~~~~~v~iv~-G 80 (238)
T PRK13385 11 GQGKMGNVPLPK--QFLDI-----DNKPILIHTIEKFILVS-EF-NEIIIATPAQWISHTQDILKKYNITDQRVKVVA-G 80 (238)
T ss_pred CCCCCCCCCCCC--CEEEE-----CCEEHHHHHHHHHHCCC-CC-CEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEC-C
T ss_conf 346148868996--43279-----97889999999985587-67-879996778889999999986154447689932-8
Q ss_pred CCCCCHHHHHHHHHHH-------CCCCEEEEECCCCEEE-CHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8887338898987861-------4897474405882782-816889988774289816995
Q gi|254780918|r 390 THPFNYSRINNNATLH-------AKGQYFCFLNNDTEVI-NGQWLSEMMGIASQPQVGAVG 442 (623)
Q Consensus 390 ~~~~n~s~~~N~g~~~-------a~geyilfLn~D~~v~-~~~wL~~Ll~~~~~~~vG~Vg 442 (623)
.....-|- .| |++. ...++|+ +++-+.++ +++++.+.+..+...+.+++.
T Consensus 81 G~tR~~SV-~n-gl~~l~~~~~~~~~~~Vl-IHDaARP~vs~~~i~~~i~~~~~~~~~~~~ 138 (238)
T PRK13385 81 GTDRNETI-MN-IIDHIRNVNGINNDDVIV-THDAVRPFLTQRIIKENIEVAVKYGAVDTV 138 (238)
T ss_pred CCCHHHHH-HH-HHHHHHHCCCCCCCCEEE-EECCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 98648999-99-999987411478768899-954667789999999999998721973799
No 215
>PRK06197 short chain dehydrogenase; Provisional
Probab=44.07 E-value=19 Score=14.87 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=24.9
Q ss_pred CCHHHHHHHHH-HHCCCCCCCCCCCEEECCCCCEEEECCCCCCCHHHHCCCCCCCHHHHHH
Q ss_conf 32079999998-7324755420222067589836542256678966741478543145768
Q gi|254780918|r 164 PTALYYVADAI-NNNPNAEIIYSDEDKINENQIRSGPYFKYDFNPELFHVHNMITHLGVYR 223 (623)
Q Consensus 164 p~~L~~~~~~l-~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~~~~~~l~s~nyi~~~~~~r 223 (623)
.+....+++.+ .+.+.+|++- ...|....|.-...-..|..+..||++|+.+..
T Consensus 79 l~sV~~~a~~~~~~~~~lDvLi------nNAGi~~~~~~~T~dG~E~~f~vN~lghflLt~ 133 (306)
T PRK06197 79 LASVRAAADALRAAYPRIDLLI------NNAGVMYTPKQTTADGFELQFGTNHLGHFALTG 133 (306)
T ss_pred HHHHHHHHHHHHHCCCCCCEEE------ECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 7789999999996189876899------778445688722676533333331368888888
No 216
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=43.82 E-value=19 Score=14.85 Aligned_cols=96 Identities=10% Similarity=0.109 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCC---CCE
Q ss_conf 74556999998764207975157997148998168999999986308882799757888733889898786148---974
Q gi|254780918|r 334 NHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHAK---GQY 410 (623)
Q Consensus 334 n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a~---gey 410 (623)
.+..+++..|+.++.... - -+|||+-+...++....+.+ ....+.+.++. ... ......-.|++..+ .++
T Consensus 30 ~g~pll~~tl~~f~~~~~-i-~~ivvv~~~~~~~~~~~~~~--~~~~~~v~~v~-GG~--~R~~SV~~gL~~~~~~~~~~ 102 (230)
T COG1211 30 GGRPLLEHTLEAFLESPA-I-DEIVVVVSPEDDPYFEKLPK--LSADKRVEVVK-GGA--TRQESVYNGLQALSKYDSDW 102 (230)
T ss_pred CCEEEHHHHHHHHHHCCC-C-CEEEEEECHHHHHHHHHHHH--HCCCCEEEEEC-CCC--CHHHHHHHHHHHHHCCCCCE
T ss_conf 998856999999974767-6-76999978466489998632--12487079934-875--17999999999721158988
Q ss_pred EEEECCCCEEE-CHHHHHHHHHHHCCCC
Q ss_conf 74405882782-8168899887742898
Q gi|254780918|r 411 FCFLNNDTEVI-NGQWLSEMMGIASQPQ 437 (623)
Q Consensus 411 ilfLn~D~~v~-~~~wL~~Ll~~~~~~~ 437 (623)
++..|. +.++ +++-+++++..+...+
T Consensus 103 VlvHDa-aRPf~~~~~i~~li~~~~~~~ 129 (230)
T COG1211 103 VLVHDA-ARPFLTPKLIKRLIELADKYG 129 (230)
T ss_pred EEEECC-CCCCCCHHHHHHHHHHHCCCC
T ss_conf 999646-667899999999998622388
No 217
>TIGR01173 glmU UDP-N-acetylglucosamine pyrophosphorylase; InterPro: IPR005882 N-Acetylglucosamine-1-PO(4) uridyltransferase (GlmU, 2.7.7.23 from EC) is a trimeric bifunctional enzyme that catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-GlcNAc. The X-ray crystal structure of Escherichia coli GlmU in complex with UDP-GlcNAc and CoA has been determined to 2.1 A resolution and reveals a two-domain architecture that is responsible for these two reactions . The C-terminal domain is responsible for the CoA-dependent acetylation of Glc-1-PO(4) to GlcNAc-1-PO(4) and displays the longest left-handed parallel beta-helix observed to date. The acetyltransferase active site defined by the binding site for CoA makes use of residues from all three subunits and is positioned beneath an open cavity large enough to accommodate the Glc-1-PO(4) acetyl acceptor. The N-terminal domain catalyzes uridyl transfer from UTP to GlcNAc-1-PO(4) to form the final products UDP-GlcNAc and pyrophosphate. This domain is composed of a central seven-stranded beta-sheet surrounded by six alpha-helices in a Rossmann fold-like topology. ; GO: 0003977 UDP-N-acetylglucosamine diphosphorylase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=43.33 E-value=20 Score=14.80 Aligned_cols=110 Identities=16% Similarity=0.216 Sum_probs=69.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC-CCEEEEECCCCCC-HHHHH
Q ss_conf 458978999747589888999999999828899748999877578067999999988757-9889998088885-64899
Q gi|254780918|r 64 QNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMD-SRIKVVFRAKNGH-ISAAS 141 (623)
Q Consensus 64 ~~~P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d-~ri~~~~~~~n~g-~~~a~ 141 (623)
|..||| +=|.-. ..+|.--|++..+=.-.+.-+|+ .-..+ .+++-+ .+.+ .-|.++.+.+..| .+.|.
T Consensus 16 S~lPKV--LH~laG--kpMl~hVi~~A~~L~~~~i~vV~--GH~~~-~V~~~l---~~~~d~t~~~v~Q~~qlGGTGHAv 85 (461)
T TIGR01173 16 SKLPKV--LHPLAG--KPMLEHVIDAARKLSPEKIHVVL--GHGAE-QVRKAL---AEENDKTVNWVLQAEQLGGTGHAV 85 (461)
T ss_pred CCCCCC--CCHHHC--CCHHHHHHHHHHCCCCCCEEEEE--CCCHH-HHHHHH---HCCCCCEEEEEEECCCCCCHHHHH
T ss_conf 386860--120103--22789999998537834159998--16869-999985---037996799999688978728999
Q ss_pred HHHHHHC---CCCEEEEECCCC-CCCCCHHH-HHHHHHHH-C-CCCCCC
Q ss_conf 9999965---998999976987-52732079-99999873-2-475542
Q gi|254780918|r 142 NSAAQLA---TSEWLALLDHDD-LLHPTALY-YVADAINN-N-PNAEII 183 (623)
Q Consensus 142 N~~l~~a---~Ge~i~~lD~DD-~l~p~~L~-~~~~~l~~-~-p~~~~i 183 (623)
..|+..= ..+.|..|..|- ++.++.|+ .|.+.-.+ + ..+.++
T Consensus 86 ~~a~~~l~~~~~~~vLvLyGDvPLi~~eTL~m~Ll~~~~~~~~~~~tlL 134 (461)
T TIGR01173 86 LQALPFLSEDDDGRVLVLYGDVPLISAETLEMRLLESHRQLNGAKVTLL 134 (461)
T ss_pred HHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 8711678886686089995887877567787798886300010451799
No 218
>PRK10974 glycerol-3-phosphate transporter periplasmic binding protein; Provisional
Probab=39.75 E-value=22 Score=14.46 Aligned_cols=60 Identities=13% Similarity=0.053 Sum_probs=33.6
Q ss_pred EEEEEE--CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHH---CCCCEEEEECC
Q ss_conf 489998--77578067999999988757988999808888564899999996---59989999769
Q gi|254780918|r 98 WELCIA--EDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQL---ATSEWLALLDH 158 (623)
Q Consensus 98 ~Eliiv--dD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l~~---a~Ge~i~~lD~ 158 (623)
-||-.= -++.....+.+++++|.+..|.|++..... +........++.. -++.-|+.++.
T Consensus 27 ~eI~fWh~~~g~~~~~l~~lv~eFn~~~p~i~V~~~~~-g~y~~~l~k~~aa~~ag~~Pdv~~~~~ 91 (439)
T PRK10974 27 TEIPFWHSMEGELGKEVDSLAQRFNASQPDYKIVPVYK-GNYEQNLAAGIAAFRSGNAPAILQVYE 91 (439)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC-CCHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 69999358998157999999999998785918999865-899999999999872699982999874
No 219
>pfam03314 DUF273 Protein of unknown function, DUF273.
Probab=39.38 E-value=23 Score=14.43 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=8.1
Q ss_pred CCCCEEEEECCCCEEECH
Q ss_conf 489747440588278281
Q gi|254780918|r 406 AKGQYFCFLNNDTEVING 423 (623)
Q Consensus 406 a~geyilfLn~D~~v~~~ 423 (623)
-.-|+++|||+|+-|+.|
T Consensus 40 ~~~d~vlfLDaD~gVvNP 57 (222)
T pfam03314 40 PDYDAVLFLDADMGVVNP 57 (222)
T ss_pred CCCCEEEEECCCCCEECC
T ss_conf 326589997188522572
No 220
>pfam04123 DUF373 Domain of unknown function (DUF373). Archaeal domain of unknown function. Predicted to be an integral membrane protein with six transmembrane regions.
Probab=39.14 E-value=23 Score=14.40 Aligned_cols=38 Identities=11% Similarity=0.124 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 999999999828899748999877578067999999988
Q gi|254780918|r 82 WLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYA 120 (623)
Q Consensus 82 ~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~ 120 (623)
-+.+.+|.++++.-++ ..++|-||..|+.+..+++.-.
T Consensus 85 ~i~~qld~vl~~~~~d-~~i~VsDGaeDE~vlPiI~sr~ 122 (344)
T pfam04123 85 KIAEQLDEVLSLYDPD-GAILVSDGAEDESVLPIIQSRI 122 (344)
T ss_pred HHHHHHHHHHHHCCCC-EEEEECCCCCHHHHHHHHHCCC
T ss_conf 9999999999824998-6999604811326557674246
No 221
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 The bacterial ispD protein catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate.; GO: 0008299 isoprenoid biosynthetic process.
Probab=37.42 E-value=24 Score=14.24 Aligned_cols=180 Identities=8% Similarity=0.076 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHC----CCC
Q ss_conf 7455699999876420797515799714899816899999998630888279975788873388989878614----897
Q gi|254780918|r 334 NHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHA----KGQ 409 (623)
Q Consensus 334 n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a----~ge 409 (623)
.+..++...|+++.+.-. -+ |||||-..+ ..++++.........+.+..-.+|-.-+.....|++.. ..+
T Consensus 25 ~G~Pll~h~~~~~~~~~~-~~-~vvVV~~~~----~~~~~~~~~~~~~~~~~~~~v~GG~~Rq~SV~~GL~a~~~~~~~~ 98 (226)
T TIGR00453 25 AGRPLLEHTLDAFLAHPA-ID-EVVVVVSPD----DTEFFQKALAARAKFKVVKIVAGGDTRQDSVRNGLKALPERADAE 98 (226)
T ss_pred CCEEEHHHHHHHHHHHHC-CC-EEEEEECCC----CHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 880221778999863232-06-468983674----158888863256578611584698746899999999876358988
Q ss_pred EEEEECCCCEE-ECHHHHHHHHHHHCC-CCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 47440588278-281688998877428-9816995376646767567787044132540678656643225655557644
Q gi|254780918|r 410 YFCFLNNDTEV-INGQWLSEMMGIASQ-PQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSVPN 487 (623)
Q Consensus 410 yilfLn~D~~v-~~~~wL~~Ll~~~~~-~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~~~~~ 487 (623)
||+.- |-..+ ++++-|+++++.++. ...++..-.+ ..||..+. ..|... .. .+.
T Consensus 99 ~VlvH-DaARPf~~~~~~~~l~~~~~~~~~a~~~A~Pv----------~DTlK~~~----~~G~~~-----~T----~dR 154 (226)
T TIGR00453 99 IVLVH-DAARPFVPKELIDRLLEALEKGAGAAILALPV----------ADTLKRVD----ADGFVV-----ET----VDR 154 (226)
T ss_pred EEEEE-CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC----------CCEEEEEC----CCCCEE-----CC----CCC
T ss_conf 28984-77345889879999999986079834874205----------43157744----888620-----26----662
Q ss_pred CCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHC-CCEEEECCCEEEEE
Q ss_conf 222233444441110110204388889871799976876323168899999974-98199847549995
Q gi|254780918|r 488 YQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEA-GYRNVWTPHADLYH 555 (623)
Q Consensus 488 ~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~-G~r~v~~P~a~v~H 555 (623)
-.-+..+.+| ++|++.+.+- .+..--..+++=+|=.-=+.+. |+++.+++....-+
T Consensus 155 ~~Lw~~QTPQ----------~F~~~~L~~A--h~~~A~~~g~~~TDDA~~~E~~~G~~v~LVeG~~~n~ 211 (226)
T TIGR00453 155 EGLWAAQTPQ----------AFRRELLLKA--HARAAKAEGFEITDDASAVERLFGGKVALVEGDADNF 211 (226)
T ss_pred CCCCEEECCC----------CCCHHHHHHH--HHHHHHHCCCCCCCHHHHHHHHCCCCEEEEECCCCCE
T ss_conf 1452557688----------7688899999--9999984698513589999996389728872761011
No 222
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=37.34 E-value=24 Score=14.23 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH--HHHHHHCCCCEE
Q ss_conf 745569999987642079751579971489981689999999863088827997578887338898--987861489747
Q gi|254780918|r 334 NHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRIN--NNATLHAKGQYF 411 (623)
Q Consensus 334 n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~--N~g~~~a~geyi 411 (623)
++.+++...++....+ +..|.++ |++++......+.+.+++|++.++-....+|+...-- -.-+..++.|+|
T Consensus 30 ~G~dl~~~ll~~~~~~----~~~v~ll--G~~~~~~~~~~~~l~~~yp~l~i~g~~~g~f~~~~~~~i~~~I~~~~~div 103 (171)
T cd06533 30 TGSDLMPALLELAAQK----GLRVFLL--GAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADIL 103 (171)
T ss_pred CHHHHHHHHHHHHHHC----CCEEEEE--ECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 8199999999999864----9749998--089899999999999788993799987899980668999999986499999
Q ss_pred EEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 4405882782816889988774289816995376
Q gi|254780918|r 412 CFLNNDTEVINGQWLSEMMGIASQPQVGAVGARL 445 (623)
Q Consensus 412 lfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~l 445 (623)
+ +-=.+ +.++-|+.++......+-+-+||+-+
T Consensus 104 ~-vglG~-PkQE~~~~~~~~~l~~~~~~~vGgaf 135 (171)
T cd06533 104 F-VGLGA-PKQELWIARHKDRLPVPVAIGVGGSF 135 (171)
T ss_pred E-EECCC-CHHHHHHHHHHHHCCCCEEEECCEEE
T ss_conf 9-96798-28899999999877998698645121
No 223
>KOG1208 consensus
Probab=36.62 E-value=25 Score=14.16 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=10.1
Q ss_pred HHHHCCCCCCCHHHHHH
Q ss_conf 66741478543145768
Q gi|254780918|r 207 PELFHVHNMITHLGVYR 223 (623)
Q Consensus 207 ~~~l~s~nyi~~~~~~r 223 (623)
.|+-...||+||+.+.+
T Consensus 136 ~E~~~~tN~lg~flLt~ 152 (314)
T KOG1208 136 LELTFATNYLGHFLLTE 152 (314)
T ss_pred HHHEEECCCHHHHHHHH
T ss_conf 11300023299999999
No 224
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=36.01 E-value=26 Score=14.10 Aligned_cols=109 Identities=11% Similarity=0.146 Sum_probs=60.8
Q ss_pred CEEEEEECCCC-HHHHHHHHHHHHHCCCCCCEEEEEEC--CCCCCHHHHHHHHHHHHCCCCCEEEEECCCC-CCHHHHHH
Q ss_conf 16999953774-55699999876420797515799714--8998168999999986308882799757888-73388989
Q gi|254780918|r 325 LVSIIIPTYNH-HHLLKICLESIYHKTTYSSFEVIIID--NLSDDSKTFLYLQKIQKKYPNLRVITDNTHP-FNYSRINN 400 (623)
Q Consensus 325 ~VSIIIp~~n~-~~~l~~cl~Sl~~~t~y~~~EiivVd--n~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~-~n~s~~~N 400 (623)
...|||= |++ .+-++..|+++.+.+. . .+|+|- .|--|..-+..+-+++.++.+..++..++.. -....+.+
T Consensus 337 ~~~vivD-YAHtP~sl~~~L~~lr~~~~-~--rli~VfG~gG~Rd~~KR~~mg~ia~~~ad~vi~T~DnPr~Edp~~I~~ 412 (481)
T PRK00139 337 GPLVIVD-YAHTPDALEKVLDALRPHAK-G--RLICVFGCGGDRDKGKRPLMGAIAERLADVVIVTSDNPRSEDPAAIIA 412 (481)
T ss_pred CCEEEEE-CCCCHHHHHHHHHHHHHHCC-C--CEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHH
T ss_conf 9689997-68998999999999987648-9--869998986777701418999999971998999399989989999999
Q ss_pred HHHHHC-CCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 878614-8974744058827828168899887742898169953
Q gi|254780918|r 401 NATLHA-KGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGA 443 (623)
Q Consensus 401 ~g~~~a-~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~ 443 (623)
...+-. ..+|..+.| -...++..+..+...++=++.+
T Consensus 413 ~i~~g~~~~~~~~i~d------R~~AI~~ai~~a~~~d~vliaG 450 (481)
T PRK00139 413 DILAGITHANAVVIED------RAEAIKYAIALAKPGDVVLIAG 450 (481)
T ss_pred HHHHCCCCCCEEEECC------HHHHHHHHHHHCCCCCEEEEEE
T ss_conf 9982698799289789------9999999998559999999973
No 225
>pfam01248 Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.
Probab=35.62 E-value=26 Score=14.06 Aligned_cols=71 Identities=24% Similarity=0.327 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHC-CCCEEEEECCCC
Q ss_conf 9999999998288997489998775780679999999887579889998088885648999999965-998999976987
Q gi|254780918|r 82 WLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQLA-TSEWLALLDHDD 160 (623)
Q Consensus 82 ~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l~~a-~Ge~i~~lD~DD 160 (623)
-+++++.++..+. .--++|+.|++++ .....+..++. ...|.+++...+.-++.+ +... .-.-++++|.++
T Consensus 19 G~~~v~k~l~~~~--aklViiA~d~~~~-~~~~~i~~~c~-~~~Ip~~~~~s~~eLG~a----~Gk~~~~s~v~I~d~g~ 90 (95)
T pfam01248 19 GLKEVTKALRRGK--AKLVIIAEDCDPE-EKVKLLPALCK-EKNVPYVYVPSKKELGEA----CGKPRPVSALAIKDNGD 90 (95)
T ss_pred CHHHHHHHHHCCC--CEEEEEECCCCHH-HHHHHHHHHHH-HCCCCEEEECCHHHHHHH----HCCCCCEEEEEEECCCC
T ss_conf 7899999998398--7399996899989-99998999998-169979995999999998----69977779999977853
No 226
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=35.44 E-value=26 Score=14.05 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=66.3
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 88881699995377455699999876420797515799714899816899999998630888279975788873388989
Q gi|254780918|r 321 NPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINN 400 (623)
Q Consensus 321 ~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N 400 (623)
.++|++.| .+..++.+.++.+.+..+ +|+|+-+-++. .|.+++.+. .+.++.. + +.||-.=.|
T Consensus 17 ~EKPlleV-----~GkpLI~~v~~al~~~~d----~i~v~isp~tp-~t~~~~~~~-----gv~vi~t-p-G~GYv~Dl~ 79 (177)
T COG2266 17 PEKPLLEV-----CGKPLIDRVLEALRKIVD----EIIVAISPHTP-KTKEYLESV-----GVKVIET-P-GEGYVEDLR 79 (177)
T ss_pred CCCCCHHH-----CCCCHHHHHHHHHHHHCC----CEEEEECCCCH-HHHHHHHHC-----CCEEEEC-C-CCCHHHHHH
T ss_conf 76752020-----781389999999972218----38999679987-699999735-----9369975-9-987089999
Q ss_pred HHHHHCCCCEEEEECCCCEEECHHHHHHHHHHHC
Q ss_conf 8786148974744058827828168899887742
Q gi|254780918|r 401 NATLHAKGQYFCFLNNDTEVINGQWLSEMMGIAS 434 (623)
Q Consensus 401 ~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~ 434 (623)
.++++.... ++.+..|.-.+.|.-++.+.+.+.
T Consensus 80 ~al~~l~~P-~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 80 FALESLGTP-ILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred HHHHHCCCC-EEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 999744994-599865534178899999999985
No 227
>pfam01128 IspD Uncharacterized protein family UPF0007.
Probab=35.02 E-value=27 Score=14.00 Aligned_cols=98 Identities=7% Similarity=0.107 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHC--CCCEE
Q ss_conf 7455699999876420797515799714899816899999998630888279975788873388989878614--89747
Q gi|254780918|r 334 NHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHA--KGQYF 411 (623)
Q Consensus 334 n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a--~geyi 411 (623)
++...+..||+.+.+. ..-+ +|+||-+.. -.++.+.+... ..+.++. ++-........|++.. ..+++
T Consensus 26 ~gkpil~~sl~~f~~~-~~i~-~Ivvv~~~~----~~~~~~~~~~~-~~i~~v~---GG~tR~~SV~ngL~~l~~~~~~V 95 (221)
T pfam01128 26 LGQPLLEHTVDAFLAS-PVVD-RIVVAVSPD----DTPEFRQLLGD-PSIQLVA---GGDTRQDSVLNGLKALAGTAKFV 95 (221)
T ss_pred CCEEHHHHHHHHHHCC-CCCC-EEEEEECHH----HHHHHHHHCCC-CCEEEEC---CCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 9888999999999638-8889-799996778----89999986079-9879967---99638999999999835899989
Q ss_pred EEECCCCEEECHHHHHHHHHHHCCCCEEEE
Q ss_conf 440588278281688998877428981699
Q gi|254780918|r 412 CFLNNDTEVINGQWLSEMMGIASQPQVGAV 441 (623)
Q Consensus 412 lfLn~D~~v~~~~wL~~Ll~~~~~~~vG~V 441 (623)
++-|..-=.++++.+++++..+....-|++
T Consensus 96 lIHDaaRP~v~~~~i~~li~~~~~~~~~~i 125 (221)
T pfam01128 96 LVHDGARPCLPHADLARLLAALETGTQGAI 125 (221)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 998365667999999999999860048613
No 228
>pfam03214 RGP Reversibly glycosylated polypeptide.
Probab=34.64 E-value=19 Score=14.92 Aligned_cols=100 Identities=11% Similarity=0.144 Sum_probs=51.8
Q ss_pred CCEEEEECCCCCCH-HHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCC--C-------
Q ss_conf 97899974758988-8999999999828899748999877578067999999988757988999808888--5-------
Q gi|254780918|r 67 PLISVIMPVYKIKK-EWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNG--H------- 136 (623)
Q Consensus 67 P~iSIiip~yn~~~-~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~--g------- 136 (623)
-.+.|+||+-+.+. .||++- .. -+..+.||||-|+....+ ..+-+.|.- . .|-++.-|+ |
T Consensus 8 ~evDIVI~al~~nLt~Fle~W-Rp----ff~~~HLIiVqD~d~~~~-i~iPeGfd~---~-vY~r~di~rvlG~~a~~i~ 77 (349)
T pfam03214 8 DEVDIVIGALRANLTDFLEEW-RP----FFSRFHLIIVKDPDLKEE-LKIPEGFDY---E-VYNKSDIERVLGASATSIS 77 (349)
T ss_pred CCCCEEEHHCCCCHHHHHHHH-HH----HHCCEEEEEEECCCCCCC-CCCCCCCCE---E-EECCCCHHHHHCCCCCEEE
T ss_conf 752088201043489999998-88----616504999838986645-448887654---6-5621103355376542562
Q ss_pred H--HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 6--489999999659989999769875273207999999873
Q gi|254780918|r 137 I--SAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINN 176 (623)
Q Consensus 137 ~--~~a~N~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~ 176 (623)
+ +..+--|.-.++-.||.-+|.|+....+---..+.++.+
T Consensus 78 f~g~sCR~FGylvSkKKYi~siDddC~pAkDp~G~~vnav~Q 119 (349)
T pfam03214 78 FSGYSCRYFGYLVSKKKYIFSIDDDCFPAKDPSGKTVDAVEQ 119 (349)
T ss_pred ECCCCCCEEEEEEECCEEEEEECCCCEECCCCCCCCCHHHHH
T ss_conf 068630223578532048999789855555998865248999
No 229
>TIGR02875 spore_0_A sporulation transcription factor Spo0A; InterPro: IPR012052 Members of this group are response regulators/transcription factors that contain CheY-like receiver (phosphoacceptor) domain and a unique DNA-binding domain. Spo0A controls the entry of Bacillus subtilis into the developmental process of sporulation . Activation of the Spo0A transcription factor by phosphorylation serves as a developmental checkpoint and to integrate several physiological signals that control entry into the sporulation pathway. The signals are generated by conditions of nutrient deprivation, high cell density, the Krebs cycle, DNA replication, DNA damage, and some aspect of the chromosome partitioning machinery . Activated Spo0A has multiple functions . It represses promoters (such as the abrB promoter) by binding to sites (0A boxes) downstream from the transcription start site. Spo0A also activates transcription from promoters used by two forms of RNA polymerase that differ by containing either the major sigma factor, sigma A (e.g. the spoIIE and spoIIG promoters) or the alternate sigma factor, sigma H (e.g. the spoIIA promoter). At promoters activated by Spo0A, the 0A boxes lie upstream of the transcription-initiation site.; GO: 0003677 DNA binding, 0005509 calcium ion binding, 0000160 two-component signal transduction system (phosphorelay), 0042173 regulation of sporulation, 0045449 regulation of transcription, 0050906 detection of stimulus during sensory perception.
Probab=34.54 E-value=27 Score=13.96 Aligned_cols=56 Identities=32% Similarity=0.447 Sum_probs=29.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHH--CCCCEEEEECCCCCCCCC
Q ss_conf 48999877578067999999988757988999808888564899999996--599899997698752732
Q gi|254780918|r 98 WELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQL--ATSEWLALLDHDDLLHPT 165 (623)
Q Consensus 98 ~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~~l~~--a~Ge~i~~lD~DD~l~p~ 165 (623)
..|||+||+- +-.++|++|-..-+.+-++--..|| +.|++. -+-+=|+.| |++.|+
T Consensus 3 Iri~i~DDNk---EFc~lL~eY~~~Q~D~EVvG~A~nG------~~a~~~I~~q~PD~vvL---DIIMPh 60 (270)
T TIGR02875 3 IRIVIADDNK---EFCNLLKEYLAAQEDMEVVGVAHNG------VDALELIKEQKPDVVVL---DIIMPH 60 (270)
T ss_pred EEEEEEECCH---HHHHHHHHHHHCCCCEEEEEECCCH------HHHHHHHHHCCCCEEEE---CCCCCC
T ss_conf 2899982888---9999999998528983899741476------89999996089989995---150430
No 230
>PRK13551 agmatine deiminase; Provisional
Probab=33.78 E-value=28 Score=13.88 Aligned_cols=32 Identities=13% Similarity=0.334 Sum_probs=16.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 99995377455699999876420797515799714
Q gi|254780918|r 327 SIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIID 361 (623)
Q Consensus 327 SIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVd 361 (623)
.||+|+|+.. .=+.+++-|.+ -+|+.+||-||
T Consensus 307 ~VivP~f~d~-~D~~A~~~l~~--~fP~R~VV~i~ 338 (360)
T PRK13551 307 GIIFPLFDDP-TDDLARDILQE--MFPDHKVVGVP 338 (360)
T ss_pred EEEEECCCCH-HHHHHHHHHHH--HCCCCEEEEEE
T ss_conf 8999048986-79999999999--88898699973
No 231
>TIGR02869 spore_SleB spore cortex-lytic enzyme; InterPro: IPR014224 The entry represents the spore cortex-lytic enzyme SleB from Bacillus subtilis and other Gram-positive, endospore-forming bacterial species. SleB is stored in an inactive form in the spore and activated during germination..
Probab=33.42 E-value=26 Score=14.11 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=52.5
Q ss_pred EEEECCCCEEECHHHHHHHHH-HHC-CCCEE--EEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 744058827828168899887-742-89816--99537664676756778704413254067865664322565555764
Q gi|254780918|r 411 FCFLNNDTEVINGQWLSEMMG-IAS-QPQVG--AVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSVP 486 (623)
Q Consensus 411 ilfLn~D~~v~~~~wL~~Ll~-~~~-~~~vG--~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~~~~ 486 (623)
--.-++|++ -|.+|+. -|. .|=.| |||+-+|+.-.....|+ || +|||+-..- +.. -..
T Consensus 112 ~~~~~~D~~-----LLAr~v~gEArGEPY~GqVAVaAViLNRv~dp~FP~-Ti--~GVIyqp~A-------F~a---v~d 173 (232)
T TIGR02869 112 SGISNQDID-----LLARLVNGEARGEPYEGQVAVAAVILNRVRDPRFPN-TI--AGVIYQPGA-------FTA---VAD 173 (232)
T ss_pred CCCCHHHHH-----HHHHHHHHHHCCCCCCCCHHHHEEEEECCCCCCCCC-CC--CCCEECCCC-------CCC---CCC
T ss_conf 676444589-----999998875068787460210003000037888788-77--652235766-------561---237
Q ss_pred CCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHC
Q ss_conf 4222233444441110110204388889871799976876323
Q gi|254780918|r 487 NYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVF 529 (623)
Q Consensus 487 ~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~ 529 (623)
|-.+. +. +.+ ++ .|.+.|+|.|+|....++||
T Consensus 174 Gqi~~-~~-p~~-~s--------~kAa~DA~nGWDPsgGAlYy 205 (232)
T TIGR02869 174 GQIWQ-LT-PTE-ES--------IKAALDALNGWDPSGGALYY 205 (232)
T ss_pred CEEEE-CC-CCH-HH--------HHHHHHHHCCCCCCCCCEEE
T ss_conf 72342-68-897-89--------99999884277888684687
No 232
>PRK05854 short chain dehydrogenase; Provisional
Probab=33.38 E-value=28 Score=13.84 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=26.2
Q ss_pred CCCCCCHHHHHHHHHHH-CCCCCCCCCCCEEECCCCCEEEECCC-CCCCHHHHCCCCCCCHHHHH
Q ss_conf 75273207999999873-24755420222067589836542256-67896674147854314576
Q gi|254780918|r 160 DLLHPTALYYVADAINN-NPNAEIIYSDEDKINENQIRSGPYFK-YDFNPELFHVHNMITHLGVY 222 (623)
Q Consensus 160 D~l~p~~L~~~~~~l~~-~p~~~~iYsDe~~i~~~g~~~~p~fk-p~~~~~~l~s~nyi~~~~~~ 222 (623)
|.-..+.....++.+.+ .+.+|++ |...|....|..+ ..-..|..+..||++|+.+.
T Consensus 73 DLs~l~sVr~~a~~~~~~~~~lDiL------InNAGv~~~~~~~~T~dG~E~~f~vN~LghflLt 131 (314)
T PRK05854 73 DLSSLASVAALGEQLLAEGRPIHLL------INNAGVMTPPERQTTADGFELQFGTNHLGHFALT 131 (314)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCEE------EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 6316899999999875306875278------7267666588654057763665553457788898
No 233
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458; InterPro: IPR006355 These sequences are all members of the IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. .
Probab=32.74 E-value=29 Score=13.77 Aligned_cols=78 Identities=21% Similarity=0.332 Sum_probs=58.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH------------CCCCEEEEECCCCEEECHH
Q ss_conf 9971489981689999999863088827997578887338898987861------------4897474405882782816
Q gi|254780918|r 357 VIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLH------------AKGQYFCFLNNDTEVINGQ 424 (623)
Q Consensus 357 iivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~------------a~geyilfLn~D~~v~~~~ 424 (623)
-++|+|+ .++.|+.+....|+..++-.-++.|.|-.+ |.|.+. -+|.|.=-.+.= .+++|
T Consensus 90 ~Llv~D~-----vl~~FdgIdTS~PNcVV~g~a~E~Fsyq~~-N~AFr~L~d~~kP~LI~~gkgryykr~dGl--~ldvG 161 (258)
T TIGR01458 90 YLLVDDD-----VLEEFDGIDTSDPNCVVMGEAEESFSYQRL-NRAFRVLLDLEKPLLIALGKGRYYKRKDGL--ALDVG 161 (258)
T ss_pred EEEEECC-----CCCCCCCCCCCCCCEEEEECCCCCCCHHHH-HHHHHHHHCCCCCCEEEECCCEEEEECCCC--CCCCH
T ss_conf 1677768-----553257566789875898257887348888-889988742889615762574112213787--11600
Q ss_pred HHHHHHHHHCCCCEEEEE
Q ss_conf 889988774289816995
Q gi|254780918|r 425 WLSEMMGIASQPQVGAVG 442 (623)
Q Consensus 425 wL~~Ll~~~~~~~vG~Vg 442 (623)
..-..++++..-++-.||
T Consensus 162 pf~~ALeyat~~ka~vvG 179 (258)
T TIGR01458 162 PFVKALEYATDIKAEVVG 179 (258)
T ss_pred HHHHHHHHHCCCEEEEEC
T ss_conf 799998642287789841
No 234
>KOG2264 consensus
Probab=32.06 E-value=30 Score=13.71 Aligned_cols=87 Identities=17% Similarity=0.168 Sum_probs=54.6
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH--
Q ss_conf 169999537745569999987642079751579971489981689999999863088827997578887338898987--
Q gi|254780918|r 325 LVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNA-- 402 (623)
Q Consensus 325 ~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g-- 402 (623)
..+||+.||.+.+.|-..|+-|.. ..|-| .||||=|.-.++. .+. .+...+--+.+++...+.. ||+=
T Consensus 650 QFTvVmLTYERe~VLm~sLeRL~g-LPYLn-KvvVVWNspk~P~-ddl--~WPdigvPv~viR~~~NsL-----NNRFlP 719 (907)
T KOG2264 650 QFTVVMLTYEREAVLMGSLERLHG-LPYLN-KVVVVWNSPKDPP-DDL--TWPDIGVPVEVIRVAENSL-----NNRFLP 719 (907)
T ss_pred EEEEEEEEEHHHHHHHHHHHHHHC-CCCCC-EEEEEECCCCCCH-HCC--CCCCCCCCEEEEECCCCCC-----CCCCCC
T ss_conf 179999972178898877987608-85302-3899957999971-105--6767797068887141244-----555567
Q ss_pred HHHCCCCEEEEECCCCEEE
Q ss_conf 8614897474405882782
Q gi|254780918|r 403 TLHAKGQYFCFLNNDTEVI 421 (623)
Q Consensus 403 ~~~a~geyilfLn~D~~v~ 421 (623)
......|-++-+|+|+...
T Consensus 720 wd~IETEAvLS~DDDahLr 738 (907)
T KOG2264 720 WDRIETEAVLSLDDDAHLR 738 (907)
T ss_pred CHHHHHEEEEECCCCHHHH
T ss_conf 0221010356415413220
No 235
>pfam02348 CTP_transf_3 Cytidylyltransferase. This family consists of two main Cytidylyltransferase activities: 1) 3-deoxy-manno-octulosonate cytidylyltransferase,, EC:2.7.7.38 catalysing the reaction:- CTP + 3-deoxy-D-manno-octulosonate <= diphosphate + CMP-3-deoxy-D-manno-octulosonate, 2) acylneuraminate cytidylyltransferase EC:2.7.7.43,, catalysing the reaction:- CTP + N-acylneuraminate <= diphosphate + CMP-N-acylneuraminate. NeuAc cytydilyltransferase of Mannheimia haemolytica has been characterized describing kinetics and regulation by substrate charge, energetic charge and amino-sugar demand.
Probab=31.64 E-value=30 Score=13.66 Aligned_cols=95 Identities=9% Similarity=0.089 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHC--CCCEE
Q ss_conf 7455699999876420797515799714899816899999998630888279975788873388989878614--89747
Q gi|254780918|r 334 NHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHA--KGQYF 411 (623)
Q Consensus 334 n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a--~geyi 411 (623)
++..++..+++...+ +..-+ +|+|.-+ |.+..+..+. +..-.+++.....-+-.+. --+++.. ..|++
T Consensus 22 ~gkpmI~~v~~~a~~-s~~~~-~viVaTd---~~~I~~~~~~----~~~~~i~t~~~~~~gt~R~-~ea~~~~~~~~d~i 91 (197)
T pfam02348 22 GGKPLIARVIEAALQ-SKLFD-KVVVATD---SEEIADIAEK----FGGGVVVRRGSLASGTDRF-IEAVKAFLADEEII 91 (197)
T ss_pred CCCCHHHHHHHHHHH-CCCCC-EEEEECC---CCEEEEECCC----CCCCEEEEEECCCCCCCHH-HHHHHHHCCHHEEE
T ss_conf 990689999999997-58987-2899548---3014420123----2331357640235652119-99998643410099
Q ss_pred EEECCCCEEECHHHHHHHHHHHC-CCCE
Q ss_conf 44058827828168899887742-8981
Q gi|254780918|r 412 CFLNNDTEVINGQWLSEMMGIAS-QPQV 438 (623)
Q Consensus 412 lfLn~D~~v~~~~wL~~Ll~~~~-~~~v 438 (623)
+-+..|.=.++|.-++.++..+. .+..
T Consensus 92 vnvqgD~Pli~p~~i~~~i~~~~~~~~~ 119 (197)
T pfam02348 92 VNLQGDEPLLQPTSILRAIEHLREAGED 119 (197)
T ss_pred EECCCCEEECCHHHHHHHHHHHHHCCCC
T ss_conf 9658966875889999999999858987
No 236
>pfam09960 DUF2194 Uncharacterized protein conserved in bacteria (DUF2194). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=31.45 E-value=30 Score=13.64 Aligned_cols=53 Identities=9% Similarity=0.232 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHHC--CCCCCEEEEE--ECCCCCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 77455699999876420--7975157997--14899816899999998630888279975
Q gi|254780918|r 333 YNHHHLLKICLESIYHK--TTYSSFEVII--IDNLSDDSKTFLYLQKIQKKYPNLRVITD 388 (623)
Q Consensus 333 ~n~~~~l~~cl~Sl~~~--t~y~~~Eiiv--Vdn~S~d~~t~~~l~~~~~~~~~~~~i~~ 388 (623)
|...+.+...++.|... +-+|++++.+ --++--+++-+ +.+.+.+|.+++|-.
T Consensus 357 W~~~e~m~~al~~L~~f~k~lfp~~~~~~YVPPSNiis~eG~---~~L~~~fP~ik~IaS 413 (573)
T pfam09960 357 WKNKEAMVKALKELKRFLKSLFPNYEPSVYVPPSNIISKEGR---EVLLKAFPEIKTIGS 413 (573)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHH---HHHHHHCCCEEEEEE
T ss_conf 899999999999999999984856535573198434498899---999875897068886
No 237
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=31.33 E-value=31 Score=13.63 Aligned_cols=95 Identities=8% Similarity=0.083 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC--CCEEEEECCCCCCHHHHHHHHHHH---CCC
Q ss_conf 745569999987642079751579971489981689999999863088--827997578887338898987861---489
Q gi|254780918|r 334 NHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYP--NLRVITDNTHPFNYSRINNNATLH---AKG 408 (623)
Q Consensus 334 n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~--~~~~i~~~~~~~n~s~~~N~g~~~---a~g 408 (623)
++...+..||+.+.... .-+ +|+||-+... .++++.+...+. .+.++. ++-......-.|++. .+.
T Consensus 26 ~gk~ii~~sl~~f~~~~-~i~-~Iivv~~~~~----~~~~~~~~~~~~~~~i~~v~---GG~tR~~SV~ngl~~l~~~~~ 96 (218)
T cd02516 26 GGKPVLEHTLEAFLAHP-AID-EIVVVVPPDD----IDLAKELAKYGLSKVVKIVE---GGATRQDSVLNGLKALPDADP 96 (218)
T ss_pred CCEEHHHHHHHHHHCCC-CCC-EEEEEECHHH----HHHHHHHHHHCCCCCEEEEC---CCCCHHHHHHHHHHHHCCCCC
T ss_conf 96799999999997589-989-7999968378----99999988644798769989---984099999989874012699
Q ss_pred CEEEEECCCCEEECHHHHHHHHHHHCCCC
Q ss_conf 74744058827828168899887742898
Q gi|254780918|r 409 QYFCFLNNDTEVINGQWLSEMMGIASQPQ 437 (623)
Q Consensus 409 eyilfLn~D~~v~~~~wL~~Ll~~~~~~~ 437 (623)
++|++-|..-=.++++.+++|+..+...+
T Consensus 97 ~~VlIHDaaRP~i~~~~i~~li~~~~~~~ 125 (218)
T cd02516 97 DIVLIHDAARPFVSPELIDRLIDALKEYG 125 (218)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 98999257677899999999999997378
No 238
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=30.88 E-value=31 Score=13.58 Aligned_cols=102 Identities=15% Similarity=0.105 Sum_probs=43.9
Q ss_pred HHHHHHHHHCCCCCCEE--EEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 99999986224589789--9974758988899999999982-88997489998775780679999999887579889998
Q gi|254780918|r 54 KKILQNISQWQNKPLIS--VIMPVYKIKKEWLEMAIESVRS-QIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVF 130 (623)
Q Consensus 54 ~~~~~~~~~~~~~P~iS--Iiip~yn~~~~~L~~~i~Si~~-Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~ 130 (623)
+.+.+-.......|..+ -+....|+ ++...+.++.|.+ |.+=+.|--|..|+..-....+.|.+-++..-+++++.
T Consensus 102 ~~l~~l~~~~~~~p~~~gN~v~ll~~G-~~~f~~m~~~I~~A~~~I~le~YI~~~D~~g~~~~~aL~~aa~rGV~VrlL~ 180 (485)
T PRK01642 102 QPLFRLCERLQGIPGLAGNQLRLLTNG-DETFQAIIDDIELARHYILMEFYIWRDDGLGDEVAEALIAAAKRGVRCRLLY 180 (485)
T ss_pred HHHHHHHHHCCCCCCCCCCEEEEECCH-HHHHHHHHHHHHHHHCEEEEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 999999997048976689779996798-9999999999998600998999998168069999999999997799899999
Q ss_pred CCC-CCCHHH-HHHHHHHHCCCCEEEEE
Q ss_conf 088-885648-99999996599899997
Q gi|254780918|r 131 RAK-NGHISA-ASNSAAQLATSEWLALL 156 (623)
Q Consensus 131 ~~~-n~g~~~-a~N~~l~~a~Ge~i~~l 156 (623)
-.- ..++.. ..-..++.+.++...|+
T Consensus 181 D~iGS~~~~~~~~~~~L~~aGv~v~~f~ 208 (485)
T PRK01642 181 DSIGSFAFFRSPYPKRLRNAGVEVVEFL 208 (485)
T ss_pred ECCCCCCCCHHHHHHHHHHCCCEEEEEC
T ss_conf 7898887770478999997898899937
No 239
>COG0088 RplD Ribosomal protein L4 [Translation, ribosomal structure and biogenesis]
Probab=30.78 E-value=31 Score=13.57 Aligned_cols=43 Identities=12% Similarity=0.087 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCC--HHHHHHHHHHHHCC
Q ss_conf 569999987642079751579971489981--68999999986308
Q gi|254780918|r 337 HLLKICLESIYHKTTYSSFEVIIIDNLSDD--SKTFLYLQKIQKKY 380 (623)
Q Consensus 337 ~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d--~~t~~~l~~~~~~~ 380 (623)
..-+-.|.|.+..+... -+++++|+-.-+ +.|.+..+-+...+
T Consensus 105 K~rrlAl~sAls~ka~~-~~lvv~~~~~~~~~~kTK~~~~~lk~l~ 149 (214)
T COG0088 105 KERRLALRSALSAKARA-GKLVVVRGHVFEDAPKTKELVEFLKKLG 149 (214)
T ss_pred HHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999999986047-9779983343368830899999999744
No 240
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=30.45 E-value=32 Score=13.54 Aligned_cols=37 Identities=24% Similarity=0.207 Sum_probs=14.0
Q ss_pred EEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 388889871799976876323168899999974981998
Q gi|254780918|r 509 MSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVW 547 (623)
Q Consensus 509 irr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~ 547 (623)
|-++++..=|-|=-.-| .+|..|=-+|..+.-|+.++
T Consensus 135 ia~~vL~~~GnfvvKvF--qGe~~d~y~~e~r~~F~~~k 171 (192)
T TIGR00438 135 IAKEVLKPKGNFVVKVF--QGEEIDEYLNELRKLFEKVK 171 (192)
T ss_pred HHHHHHHCCCCEEEEEE--ECCCHHHHHHHHHHCCCEEE
T ss_conf 99998615898999985--37428899997652054767
No 241
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=30.38 E-value=32 Score=13.53 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=23.8
Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 999998764207975157997148998168999999986308882799
Q gi|254780918|r 339 LKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVI 386 (623)
Q Consensus 339 l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i 386 (623)
|.-.|+....+-. .-==+++|||||++.++.++ +++..-.-++.+|
T Consensus 404 l~~aLED~~RhGq-KlPL~VlvDnGsTeEDipA~-~~~k~Ygi~ivVV 449 (715)
T COG1107 404 LNFALEDAHRHGQ-KLPLLVLVDNGSTEEDIPAI-KQLKAYGIDIVVV 449 (715)
T ss_pred HHHHHHHHHHCCC-CCCEEEEECCCCCCCCCHHH-HHHHHCCCCEEEE
T ss_conf 8899999996087-56569997689864462789-8887549978997
No 242
>pfam04488 Gly_transf_sug Glycosyltransferase sugar-binding region containing DXD motif. The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases.
Probab=30.23 E-value=32 Score=13.52 Aligned_cols=26 Identities=8% Similarity=0.202 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf 5699999876420797515799714899
Q gi|254780918|r 337 HLLKICLESIYHKTTYSSFEVIIIDNLS 364 (623)
Q Consensus 337 ~~l~~cl~Sl~~~t~y~~~EiivVdn~S 364 (623)
+..++|++|..++ .|++|+++.++..
T Consensus 2 ~~~~~~i~Sw~k~--nPdy~~~~~~d~~ 27 (97)
T pfam04488 2 ERVMKAIKSLIKL--NPDYCVVVLSDEL 27 (97)
T ss_pred HHHHHHHHHHHHH--CCCCEEEEECCCH
T ss_conf 7899999999988--9691899977702
No 243
>KOG0385 consensus
Probab=29.59 E-value=33 Score=13.45 Aligned_cols=79 Identities=10% Similarity=0.007 Sum_probs=38.4
Q ss_pred HHHHHHHCCCCCCEEEEEECCCCCCHH-HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCEE
Q ss_conf 998764207975157997148998168-9999999863088827997578887338898987861489747440588278
Q gi|254780918|r 342 CLESIYHKTTYSSFEVIIIDNLSDDSK-TFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHAKGQYFCFLNNDTEV 420 (623)
Q Consensus 342 cl~Sl~~~t~y~~~EiivVdn~S~d~~-t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a~geyilfLn~D~~v 420 (623)
.|+=|.....+.+||.-=+| ||+..+ -.+.++.+.+......+..-....+ -+|+-.+..|.|+|.|+|=.+
T Consensus 499 mLDILeDyc~~R~y~ycRiD-GSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAG------GLGINL~aADtVIlyDSDWNP 571 (971)
T KOG0385 499 MLDILEDYCMLRGYEYCRLD-GSTSHEEREDAIEAFNAPPSEKFIFLLSTRAG------GLGINLTAADTVILYDSDWNP 571 (971)
T ss_pred HHHHHHHHHHHCCCEEEEEC-CCCCCHHHHHHHHHCCCCCCCEEEEEEECCCC------CCCCCCCCCCEEEEECCCCCC
T ss_conf 99999999875175268723-88870789999986389976258999850466------663022236479996689982
Q ss_pred ECHHHHHHH
Q ss_conf 281688998
Q gi|254780918|r 421 INGQWLSEM 429 (623)
Q Consensus 421 ~~~~wL~~L 429 (623)
+-| |..|
T Consensus 572 -Q~D-LQAm 578 (971)
T KOG0385 572 -QVD-LQAM 578 (971)
T ss_pred -HHH-HHHH
T ss_conf -143-7889
No 244
>pfam01762 Galactosyl_T Galactosyltransferase. This family includes the galactosyltransferases UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-galactosyltransferase and UDP-Gal:beta-GlcNAc beta 1,3-galactosyltranferase. Specific galactosyltransferases transfer galactose to GlcNAc terminal chains in the synthesis of the lacto-series oligosaccharides types 1 and 2.
Probab=29.41 E-value=33 Score=13.43 Aligned_cols=42 Identities=12% Similarity=0.136 Sum_probs=25.6
Q ss_pred CHHEEEEEHHHHHHHCCCCH--HHHHHHCCHHHH-HHHHHHCCCEEE
Q ss_conf 11020438888987179997--687632316889-999997498199
Q gi|254780918|r 503 TGACMVMSKKCFMHVGGFDE--KNTPVVFSDIDL-CLRILEAGYRNV 546 (623)
Q Consensus 503 tgacllirr~~f~~iGGfDE--~~~~~~~eDvDl-clR~~~~G~r~v 546 (623)
+|.+.++..++...+=--.. ..| ..|||=+ ++=+.+.|.+-+
T Consensus 149 ~G~~YvlS~d~v~~l~~~~~~~~~~--~~eDv~vtGila~~~gi~p~ 193 (196)
T pfam01762 149 SGPFYLLSRDAAELLLKASKHRRFL--QIEDVYVTGILADDLGISRV 193 (196)
T ss_pred CCCEEEECHHHHHHHHHHHCCCCCC--CCCHHHHHHHHHHHCCCCCC
T ss_conf 8888886699999999985048988--80133569999998699988
No 245
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=29.32 E-value=33 Score=13.42 Aligned_cols=80 Identities=18% Similarity=0.251 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCC-CC-HHHHHHHHHHHCCCCEE
Q ss_conf 74556999998764207975157997148998168999999986308882799757888-73-38898987861489747
Q gi|254780918|r 334 NHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHP-FN-YSRINNNATLHAKGQYF 411 (623)
Q Consensus 334 n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~-~n-~s~~~N~g~~~a~geyi 411 (623)
+...+++..++.+..... +|+|+-+. + .. . +. ..++.+...+ .| .+++ =.|++++.+|++
T Consensus 33 g~~~Lie~~~~~l~~~~~----~i~is~~~--~--~~----~----~~-~~~i~d~~~~~~GPL~Gi-~saL~~~~~~~~ 94 (196)
T PRK00560 33 SYSSLLEYQYTRLLKLFK----KVYISTKD--K--KF----E----FN-APFLLEKESDLFSPLFGI-HNAFLTLQTPEI 94 (196)
T ss_pred CCCHHHHHHHHHHHHHCC----EEEEECCC--H--HH----H----CC-CCEEECCCCCCCCHHHHH-HHHHHHCCCCCE
T ss_conf 955599999999886367----68996481--3--66----4----59-988865788988809999-999985777868
Q ss_pred EEECCCCEEECHHHHHHHHH
Q ss_conf 44058827828168899887
Q gi|254780918|r 412 CFLNNDTEVINGQWLSEMMG 431 (623)
Q Consensus 412 lfLn~D~~v~~~~wL~~Ll~ 431 (623)
+++-.|+=.++++.++.|++
T Consensus 95 ~v~~cD~Pfl~~~~i~~L~~ 114 (196)
T PRK00560 95 FFISVDTPFVSFESIKKLCG 114 (196)
T ss_pred EEEECCCCCCCHHHHHHHHH
T ss_conf 99957888889999999972
No 246
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase; InterPro: IPR010961 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents 5-aminoaevulinic acid (ALA) synthase (2.3.1.37 from EC), which catalyses the first stage of tetrapyrrole biosynthesis by the C4 pathway, namely the condensation of succinyl CoA and glycine. ALA synthase is a pyridoxal-phosphate-dependent enzyme. During catalysis, glycine initially binds to the enzyme cofactor, and after condensation with succinyl CoA, CoA, carbon dioxide and 5-aminolevulinic acid are produced .; GO: 0003870 5-aminolevulinate synthase activity, 0030170 pyridoxal phosphate binding, 0033014 tetrapyrrole biosynthetic process.
Probab=28.14 E-value=35 Score=13.29 Aligned_cols=172 Identities=22% Similarity=0.330 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEECCC--CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 69999987642079751579971489--9816899999998630888279975788873388989878614897474405
Q gi|254780918|r 338 LLKICLESIYHKTTYSSFEVIIIDNL--SDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHAKGQYFCFLN 415 (623)
Q Consensus 338 ~l~~cl~Sl~~~t~y~~~EiivVdn~--S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a~geyilfLn 415 (623)
.|++=|.-|..+-+- +|. -.| |.| .| |..|.+..|++.+..+. +|.+-+ =.|++++.++=.+|=.
T Consensus 95 ~LEaELAdLH~KE~A----LvF-tSgyVaNd-a~---L~tL~k~~P~~~ifSD~---LNHASM-I~GIr~S~~~k~iFrH 161 (427)
T TIGR01821 95 ELEAELADLHGKESA----LVF-TSGYVAND-AT---LATLAKIIPGCVIFSDE---LNHASM-IEGIRRSGAEKFIFRH 161 (427)
T ss_pred HHHHHHHHHCCCCHH----HHH-HHHHHHHH-HH---HHHHHHHCCCEEEEECC---CCHHHH-HHHHHHCCCCEEEEEC
T ss_conf 999999755173113----567-78899999-99---99999870885898365---563569-9998747895056305
Q ss_pred CCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEE---------------------EEC-CEEECCC--CC
Q ss_conf 88278281688998877428981699537664676756778704---------------------413-2540678--65
Q gi|254780918|r 416 NDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRL---------------------QHG-GVIMGIN--NI 471 (623)
Q Consensus 416 ~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~i---------------------qha-G~v~g~~--~~ 471 (623)
||+ . + |++|++-. +|.+ |||+-.+.. ..=||-| .|| |+. |.. |+
T Consensus 162 ND~-~-h---Le~LL~~~-d~~~----PKiIAFESv-YSMDGd~aPi~eiCDlA~kYGALTy~DEVHAVGlY-GprGgGI 229 (427)
T TIGR01821 162 NDV-A-H---LEKLLQSV-DPNA----PKIIAFESV-YSMDGDIAPIKEICDLADKYGALTYLDEVHAVGLY-GPRGGGI 229 (427)
T ss_pred CCH-H-H---HHHHHHHC-CCCC----CCEEEEEEH-CCCCCCCCCHHHHHHHHHHHCCCCEECCEEEECCC-CCCCCCC
T ss_conf 997-8-9---99998647-7998----956886100-01678726678896688871886300114653365-8888851
Q ss_pred CCCC-CCCCCCCC---CCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCC
Q ss_conf 6643-22565555---764422223344444111011020438888987179997687632316889999997498
Q gi|254780918|r 472 AGHK-NKHHKARC---SVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGY 543 (623)
Q Consensus 472 ~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~ 543 (623)
+.+. |.-+.... ..-+..+....+...+.-++|.. -+.|--+||+=. -...=+|+- |.-..||
T Consensus 230 aErddfeshrasGiatPktndkGGakt~mhriDii~GTL----aKAFG~~GGYIa----~~~~L~D~~-RS~ApGF 296 (427)
T TIGR01821 230 AERDDFESHRASGIATPKTNDKGGAKTLMHRIDIIEGTL----AKAFGVVGGYIA----ASRKLIDAV-RSYAPGF 296 (427)
T ss_pred CHHHHCCHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCC----HHHCCCCCCEEE----CCCCCEEEE-EECCCCC
T ss_conf 202211000015767776576665200111000001651----122344453020----552213200-0037842
No 247
>PRK05319 rplD 50S ribosomal protein L4; Provisional
Probab=27.02 E-value=36 Score=13.17 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=12.0
Q ss_pred EEEEECCCC-CCHHHHHHHHHHHH
Q ss_conf 799714899-81689999999863
Q gi|254780918|r 356 EVIIIDNLS-DDSKTFLYLQKIQK 378 (623)
Q Consensus 356 EiivVdn~S-~d~~t~~~l~~~~~ 378 (623)
+|+|||+-. .++.|.++.+-+..
T Consensus 121 ~l~Vvd~~~~~~~KTK~~~~~L~~ 144 (206)
T PRK05319 121 RLVVVDDFSLEAPKTKELAAKLKN 144 (206)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 859972576667788999999997
No 248
>KOG3742 consensus
Probab=26.75 E-value=37 Score=13.14 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHCC----CCCE------EEEEECCCCCHHHHHHHHHH
Q ss_conf 89999999998288----9974------89998775780679999999
Q gi|254780918|r 81 EWLEMAIESVRSQI----YSHW------ELCIAEDCSGDIETVSLLKK 118 (623)
Q Consensus 81 ~~L~~~i~Si~~Qt----y~~~------EliivdD~S~d~~~~~~l~~ 118 (623)
.-++++++|..+.- |.+| .+|+.|=+|.-....++-.+
T Consensus 86 ~~i~~al~sm~s~G~~~~~GrWLIeG~P~viLfdlgs~a~~l~~wK~e 133 (692)
T KOG3742 86 RPIRRALDSMRSRGCKVHYGRWLIEGAPKVILFDLGSSAWKLNEWKGE 133 (692)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEECCCCEEEEEECCCCHHHHHHHHHH
T ss_conf 089999999874783798543784389769999756312047667678
No 249
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=26.08 E-value=38 Score=13.07 Aligned_cols=149 Identities=14% Similarity=0.133 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 02478776544444333333443114564317899985237998899999999862245897899974758988899999
Q gi|254780918|r 7 CVVKSLLRKIKLKFPSRHKRRIIKFENFEKEYREWSSLFHDTSPQFTKKILQNISQWQNKPLISVIMPVYKIKKEWLEMA 86 (623)
Q Consensus 7 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~y~~W~~~~~~~~~~~~~~~~~~~~~~~~~P~iSIiip~yn~~~~~L~~~ 86 (623)
..||+.+..+- .-+.+-++-|....+.|= -.+.+..+.+...++..++.+.+..-+|-|+=|+=...---..++
T Consensus 90 ~NPRSTVGTvT----EIyDYLRLLfArvG~p~C--P~~~~~i~~qt~~~Ivd~i~~~~~g~r~~lLAP~Vr~~KG~f~~~ 163 (956)
T TIGR00630 90 HNPRSTVGTVT----EIYDYLRLLFARVGTPYC--PECGRPIEEQTVSQIVDQILALPEGTRVILLAPIVRGRKGEFRKL 163 (956)
T ss_pred CCCCCCCCCEE----EHHHHHHHHHHHCCCCCC--CCCCCHHHHCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHH
T ss_conf 88855444321----036778999983688788--877732643387899999862489965899657324777528999
Q ss_pred HHHHHHCCCCC----EEEEEECCCCCHHHHHHHHHHHHHHC-----CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 99998288997----48999877578067999999988757-----9889998088885648999999965998999976
Q gi|254780918|r 87 IESVRSQIYSH----WELCIAEDCSGDIETVSLLKKYANMD-----SRIKVVFRAKNGHISAASNSAAQLATSEWLALLD 157 (623)
Q Consensus 87 i~Si~~Qty~~----~EliivdD~S~d~~~~~~l~~~~~~d-----~ri~~~~~~~n~g~~~a~N~~l~~a~Ge~i~~lD 157 (623)
++.+.+|=|-. =|++-++|.-+ --|++..+++ .||++-.++...=++.+.-.+|+.+.|...+.++
T Consensus 164 l~~l~~~Gf~RV~vDG~~~~L~~~~~-----l~L~k~~KH~I~~ViDR~~v~~~~~~~RL~eSvEtaL~~~~G~~~v~~~ 238 (956)
T TIGR00630 164 LEKLRKQGFARVRVDGEVYRLEDEPT-----LKLEKNKKHTIDVVIDRLVVKDNENRSRLAESVETALRLSEGLLEVEIE 238 (956)
T ss_pred HHHHHHCCCEEEEECCEEEEECCCCC-----CCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99998669618998677886221325-----7776555521899982478767433211689999998505874899973
Q ss_pred CCCCCCCCH
Q ss_conf 987527320
Q gi|254780918|r 158 HDDLLHPTA 166 (623)
Q Consensus 158 ~DD~l~p~~ 166 (623)
.+.......
T Consensus 239 ~~~~~~~~~ 247 (956)
T TIGR00630 239 DDESPAEGK 247 (956)
T ss_pred CCCCCCCCH
T ss_conf 677654102
No 250
>KOG0391 consensus
Probab=25.74 E-value=38 Score=13.03 Aligned_cols=18 Identities=11% Similarity=0.119 Sum_probs=10.8
Q ss_pred HHHHCCCCEEEEECCCCE
Q ss_conf 786148974744058827
Q gi|254780918|r 402 ATLHAKGQYFCFLNNDTE 419 (623)
Q Consensus 402 g~~~a~geyilfLn~D~~ 419 (623)
|+-....|-|+|-|+|-.
T Consensus 1341 GiNLtgADTVvFYDsDwN 1358 (1958)
T KOG0391 1341 GINLTGADTVVFYDSDWN 1358 (1958)
T ss_pred CCCCCCCCEEEEECCCCC
T ss_conf 201346745898458888
No 251
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=24.69 E-value=40 Score=12.91 Aligned_cols=127 Identities=15% Similarity=0.150 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCC--HHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 998789999999974133432235775301213678888816999953774--556999998764207975157997148
Q gi|254780918|r 285 AGKAGERALNEHFQRTGIAAKAVFDGAQYRTHYMIPNPPPLVSIIIPTYNH--HHLLKICLESIYHKTTYSSFEVIIIDN 362 (623)
Q Consensus 285 ~~~a~~~ai~~~l~R~g~~~~~~~~~~~~r~~~~~~~~~P~VSIIIp~~n~--~~~l~~cl~Sl~~~t~y~~~EiivVdn 362 (623)
|.-++.|-+.+--+|.|++.........-...-.-....|. .....++ .+.+++-|..++++.. .++++.++-|
T Consensus 300 AA~~aerYi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~QL~~~f~r~~-~~v~l~~~ld 375 (555)
T TIGR03143 300 AATSAERYVKELKEKLGIAEEYEEEEAKEASEASAAETTPA---ATTKKGSLLDDSLRQQLVGIFGRLE-NPVTLLLFLD 375 (555)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEEEEEC
T ss_conf 99999999999999859996445654433322466445765---4578887779889999999999735-9679999947
Q ss_pred CCC--CHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 998--16899999998630888279975788873388989878614897474405882
Q gi|254780918|r 363 LSD--DSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHAKGQYFCFLNNDT 418 (623)
Q Consensus 363 ~S~--d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a~geyilfLn~D~ 418 (623)
.|+ ..|...++++++..-+.+.+.....+. +-. .........-+.+.++|.|=
T Consensus 376 ~s~~~S~El~~~~~e~~~ls~k~~~~~~~~~~-~~~--~~~~~~~~~~P~~~~~~~~g 430 (555)
T TIGR03143 376 GSNEKSAELQSFLGEFASLSEKLNSEAVNRGE-EPE--SETLPKITKLPTVALLDDDG 430 (555)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC-CCC--HHCCCCCCCCCEEEEECCCC
T ss_conf 98066599999999998637755899813776-520--00113434586589987899
No 252
>TIGR03380 agmatine_aguA agmatine deiminase. Members of this family are agmatine deiminase (3.5.3.12), as characterized in Pseudomonas aeruginosa and plants. Related deiminases include the peptidyl-arginine deiminase (3.5.3.15) as found in Porphyromonas gingivalis.
Probab=24.67 E-value=40 Score=12.90 Aligned_cols=32 Identities=16% Similarity=0.392 Sum_probs=14.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 99995377455699999876420797515799714
Q gi|254780918|r 327 SIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIID 361 (623)
Q Consensus 327 SIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVd 361 (623)
.||+|+|+... =+.+++-|. + -+|+.+||-||
T Consensus 306 ~VivP~fg~~~-D~~A~~~l~-~-~fP~R~VV~I~ 337 (357)
T TIGR03380 306 GIILPLFDDPN-DKLAQQQLQ-E-LFPDRKVVGVP 337 (357)
T ss_pred EEEECCCCCHH-HHHHHHHHH-H-HCCCCEEEEEE
T ss_conf 99985789867-999999999-8-88798799984
No 253
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=24.53 E-value=40 Score=12.89 Aligned_cols=120 Identities=16% Similarity=0.205 Sum_probs=60.4
Q ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC-----CCEEEEECCCC
Q ss_conf 6788888169999537745569999987642079751579971489981689999999863088-----82799757888
Q gi|254780918|r 318 MIPNPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYP-----NLRVITDNTHP 392 (623)
Q Consensus 318 ~~~~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~-----~~~~i~~~~~~ 392 (623)
++....|+. .+|.-| ..++.-.|+.|..+ ... ||+|+-... ..+..+++++...... .+.++. ..+.
T Consensus 16 PlT~~~PK~--LlPv~n-~Pli~y~l~~L~~~-G~~--ei~v~~~~~-~~~i~~~~~~~~~~~~~~~~~~v~~~~-~~~~ 87 (217)
T cd04197 16 PLTKEKPRC--LLPLAN-VPLIDYTLEFLALN-GVE--EVFVFCCSH-SDQIKEYIEKSKWSKPKSSLMIVIIIM-SEDC 87 (217)
T ss_pred HHHCCCCCC--CCEECC-EEHHHHHHHHHHHC-CCC--EEEEECCCC-HHHHHHHHHHHHHCCCCCCCCEEEEEE-CCCC
T ss_conf 203589865--337999-98399999999987-997--799994689-999999998432215667773489975-6888
Q ss_pred CCH-HHHHHHHHH-HCCCCEEEEECCCCEEECHHHHHHHHHHH-CC--CCEEEEEEEEECC
Q ss_conf 733-889898786-14897474405882782816889988774-28--9816995376646
Q gi|254780918|r 393 FNY-SRINNNATL-HAKGQYFCFLNNDTEVINGQWLSEMMGIA-SQ--PQVGAVGARLWYR 448 (623)
Q Consensus 393 ~n~-s~~~N~g~~-~a~geyilfLn~D~~v~~~~wL~~Ll~~~-~~--~~vG~Vg~~ll~~ 448 (623)
.+. .++...-.+ .-++|+++ ++.|+ +.+-+ |..|+++. ++ .+-+++--.++..
T Consensus 88 ~~~Gdalr~l~~~~~i~~dFlv-~~gD~-it~~~-l~~~l~~Hr~~r~~dk~a~~T~~~~~ 145 (217)
T cd04197 88 RSLGDALRDLDAKGLIRGDFIL-VSGDV-VSNID-LKEILEEHKERRKKDKNAIMTMVLKE 145 (217)
T ss_pred CCHHHHHHHHHHHCCCCCCEEE-EECCC-EECCC-HHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 7651699988760447899999-97990-41378-89999999863133757448998704
No 254
>TIGR00407 proA gamma-glutamyl phosphate reductase; InterPro: IPR000965 Gamma-glutamyl phosphate reductase (1.2.1.41 from EC) (GPR) is the enzyme that catalyzes the second step in the biosynthesis of proline from glutamate, the NADP-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. In bacteria (gene proA) and yeast (gene PRO2), GPR is a monofunctional protein, while in plants and mammals, it is a bifunctional enzyme (P5CS) that consists of two domains, an N-terminal glutamate 5-kinase domain (2.7.2.11 from EC) and a C-terminal GPR domain. ; GO: 0004350 glutamate-5-semialdehyde dehydrogenase activity, 0006561 proline biosynthetic process.
Probab=24.05 E-value=41 Score=12.83 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHH----CCCCCCCCCC-CCCEEEE-CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 998789999999974----1334322357-7530121-367888881699995377455699999876420797515799
Q gi|254780918|r 285 AGKAGERALNEHFQR----TGIAAKAVFD-GAQYRTH-YMIPNPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVI 358 (623)
Q Consensus 285 ~~~a~~~ai~~~l~R----~g~~~~~~~~-~~~~r~~-~~~~~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~Eii 358 (623)
...+-...|++.|+. .|+|...+.. ..+.|.. ..+-.-..-|.+||| |++..+.+.|- ++|.-| ||
T Consensus 144 s~~~l~~Vi~~AL~~fqse~glP~~AVqli~~~~R~~v~eLL~ld~Y~Dl~iP-RGg~~L~~~~~----~~s~iP---Vl 215 (415)
T TIGR00407 144 SNKALVEVIQDALEQFQSETGLPVGAVQLIEDPDRELVSELLKLDEYVDLIIP-RGGNGLVKLIK----QESTIP---VL 215 (415)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHCCCCCEEEEEE-CCCHHHHHHHH----HCCCCC---EE
T ss_conf 99999999999999861034787788750489988899999600783179973-78289999987----157777---60
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCE
Q ss_conf 71489981689999999863088827997578887338898987861489747440588278281688998877428981
Q gi|254780918|r 359 IIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQV 438 (623)
Q Consensus 359 vVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~v 438 (623)
.--.|- ..-|+++-+....-.+++.+-.. +|.+.||. ++ =|++|..+ ...|++.|...+...+|
T Consensus 216 ~~g~G~----Chiy~D~~Ad~~~A~~v~vnAKT--qrPs~CNa-~E------TLLv~~~i---A~~fl~~L~~~l~e~GV 279 (415)
T TIGR00407 216 GHGDGI----CHIYLDESADLSKAIKVIVNAKT--QRPSTCNA-IE------TLLVNKAI---AEEFLPELAKQLEEKGV 279 (415)
T ss_pred CCCCEE----EEEEEECCCCHHCCCEEEEECCC--CCCCHHHH-HH------HHHHCHHH---HHHHHHHHHHHHHHCCC
T ss_conf 367525----66633065351059225530556--98834568-88------88506899---98888999999985794
Q ss_pred EEEEEE
Q ss_conf 699537
Q gi|254780918|r 439 GAVGAR 444 (623)
Q Consensus 439 G~Vg~~ 444 (623)
-+=|.|
T Consensus 280 ~~hatk 285 (415)
T TIGR00407 280 TLHATK 285 (415)
T ss_pred EEEECH
T ss_conf 487400
No 255
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=23.37 E-value=43 Score=12.75 Aligned_cols=281 Identities=12% Similarity=0.106 Sum_probs=132.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
Q ss_conf 45897899974758988899999999982889974899987757806799999998875798899980888856489999
Q gi|254780918|r 64 QNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNS 143 (623)
Q Consensus 64 ~~~P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~~~a~N~ 143 (623)
+..|.|=|--..+. +...+.-.|+. +.+.||++-+++.-- |.. -.+.+++.. .+.+.+...+- -...+.|.
T Consensus 47 ~~~p~vWiHaaSVG-Ev~a~~pLv~~-l~~~~P~~~ilvTt~--T~T-g~e~a~~~~--~~~v~h~YlP~--D~~~~v~r 117 (419)
T COG1519 47 PEGPLVWIHAASVG-EVLAALPLVRA-LRERFPDLRILVTTM--TPT-GAERAAALF--GDSVIHQYLPL--DLPIAVRR 117 (419)
T ss_pred CCCCEEEEEECCHH-HHHHHHHHHHH-HHHHCCCCCEEEEEC--CCC-HHHHHHHHC--CCCEEEEECCC--CCHHHHHH
T ss_conf 88880799964466-78888999999-997689987899952--763-799999876--98708996576--76688999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCHHHHCCCCCCCHHHHHH
Q ss_conf 99965998999976987527320799999987324755420222067589836542256678966741478543145768
Q gi|254780918|r 144 AAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYDFNPELFHVHNMITHLGVYR 223 (623)
Q Consensus 144 ~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~~~~~~l~s~nyi~~~~~~r 223 (623)
=++.-+-+.++++..+- =|+-+.++ .. .++-++- .+++-++--|+ .|. ...-+-
T Consensus 118 Fl~~~~P~l~Ii~EtEl--WPnli~e~----~~-~~~p~~L-------vNaRLS~rS~~-~y~-----------k~~~~~ 171 (419)
T COG1519 118 FLRKWRPKLLIIMETEL--WPNLINEL----KR-RGIPLVL-------VNARLSDRSFA-RYA-----------KLKFLA 171 (419)
T ss_pred HHHHCCCCEEEEEECCC--CHHHHHHH----HH-CCCCEEE-------EEEEECHHHHH-HHH-----------HHHHHH
T ss_conf 99742898799980013--67899999----87-6998999-------94230232577-798-----------778999
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999718878987730274136788642487522006842279953388533880134689987899999999741334
Q gi|254780918|r 224 TETFKKIGGFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVLYHWRMHDNSTAQKIGNKNYAGKAGERALNEHFQRTGIA 303 (623)
Q Consensus 224 r~~~~~iGgf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vLy~~R~~~~s~~~~~~~k~~~~~a~~~ai~~~l~R~g~~ 303 (623)
+.++..+-.+ .+|+-+=.-|+...+. .. ++ ..|+........+ ...+...+
T Consensus 172 ~~~~~~i~li-----~aQse~D~~Rf~~LGa-~~-v~----------v~GNlKfd~~~~~-~~~~~~~~----------- 222 (419)
T COG1519 172 RLLFKNIDLI-----LAQSEEDAQRFRSLGA-KP-VV----------VTGNLKFDIEPPP-QLAAELAA----------- 222 (419)
T ss_pred HHHHHHCCEE-----EECCHHHHHHHHHCCC-CC-EE----------EECCEEECCCCCH-HHHHHHHH-----------
T ss_conf 9999742333-----4548888999996498-61-38----------6333242377873-24899999-----------
Q ss_pred CCCCCCCCCEEEECCCCCCCCCEEEEEECCCCHHH-HHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 32235775301213678888816999953774556-99999876420797515799714899816899999998630888
Q gi|254780918|r 304 AKAVFDGAQYRTHYMIPNPPPLVSIIIPTYNHHHL-LKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPN 382 (623)
Q Consensus 304 ~~~~~~~~~~r~~~~~~~~~P~VSIIIp~~n~~~~-l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~ 382 (623)
+|.++. .+ -.|-|..-|+.+.+. +......+.++ ++|.-+|+|--. +|-..-.+.+.++. +
T Consensus 223 ---------~r~~l~--~~-r~v~iaaSTH~GEeei~l~~~~~l~~~--~~~~llIlVPRH---pERf~~v~~l~~~~-g 284 (419)
T COG1519 223 ---------LRRQLG--GH-RPVWVAASTHEGEEEIILDAHQALKKQ--FPNLLLILVPRH---PERFKAVENLLKRK-G 284 (419)
T ss_pred ---------HHHHCC--CC-CCEEEEECCCCCHHHHHHHHHHHHHHH--CCCCEEEEECCC---HHHHHHHHHHHHHC-C
T ss_conf ---------998508--88-855999547786388999999999963--899569991587---55679999999975-9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 2799757888733889898786148974744058827828168899887742898169953766
Q gi|254780918|r 383 LRVITDNTHPFNYSRINNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLW 446 (623)
Q Consensus 383 ~~~i~~~~~~~n~s~~~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll 446 (623)
..+... ++|+ ..+.+.|+.+ -|-+-+|..+..-.+|..||+-+.
T Consensus 285 l~~~~r-----------------S~~~-~~~~~tdV~l--~DtmGEL~l~y~~adiAFVGGSlv 328 (419)
T COG1519 285 LSVTRR-----------------SQGD-PPFSDTDVLL--GDTMGELGLLYGIADIAFVGGSLV 328 (419)
T ss_pred CEEEEE-----------------CCCC-CCCCCCCEEE--EECHHHHHHHHHHCCEEEECCCCC
T ss_conf 818861-----------------3789-9988886899--962868999973432799877446
No 256
>PRK12483 threonine dehydratase; Reviewed
Probab=23.14 E-value=43 Score=12.72 Aligned_cols=11 Identities=0% Similarity=-0.079 Sum_probs=4.8
Q ss_pred CHHHHHHHHHH
Q ss_conf 81688998877
Q gi|254780918|r 422 NGQWLSEMMGI 432 (623)
Q Consensus 422 ~~~wL~~Ll~~ 432 (623)
.|+-+.++.+.
T Consensus 355 ~~Gsf~~f~~~ 365 (521)
T PRK12483 355 QPGSFKAFCAA 365 (521)
T ss_pred CCCHHHHHHHH
T ss_conf 88689999998
No 257
>PRK09224 threonine dehydratase; Reviewed
Probab=22.30 E-value=45 Score=12.62 Aligned_cols=12 Identities=0% Similarity=-0.064 Sum_probs=5.2
Q ss_pred CHHHHHHHHHHH
Q ss_conf 816889988774
Q gi|254780918|r 422 NGQWLSEMMGIA 433 (623)
Q Consensus 422 ~~~wL~~Ll~~~ 433 (623)
.|+-+.++.+..
T Consensus 338 ~~Gsf~~f~~~~ 349 (504)
T PRK09224 338 EPGSFLKFCELL 349 (504)
T ss_pred CCCHHHHHHHHH
T ss_conf 997799999996
No 258
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=21.98 E-value=45 Score=12.58 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=16.0
Q ss_pred HHHHHHHHHHCCCCCCEEEEEECC-CCCCHHHHHHHHHHHHCCCCC
Q ss_conf 999998764207975157997148-998168999999986308882
Q gi|254780918|r 339 LKICLESIYHKTTYSSFEVIIIDN-LSDDSKTFLYLQKIQKKYPNL 383 (623)
Q Consensus 339 l~~cl~Sl~~~t~y~~~EiivVdn-~S~d~~t~~~l~~~~~~~~~~ 383 (623)
+++-|..++++.. .++++++..| .....++.+++++++.-.+.+
T Consensus 6 i~~QL~~~~~~l~-~~V~l~~~~~~~~~s~el~~~l~eiaslSdkI 50 (94)
T cd02974 6 LKQQLKAYLERLE-NPVELVASLDDSEKSAELLELLEEIASLSDKI 50 (94)
T ss_pred HHHHHHHHHHHCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCE
T ss_conf 9999999999668-98899999489721699999999999628957
No 259
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=21.91 E-value=46 Score=12.57 Aligned_cols=112 Identities=12% Similarity=0.116 Sum_probs=65.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHC----CCCCEEEEEECCCCCHHHHHHHHHHHHH----HCCCEEEEECCCCCCHH
Q ss_conf 978999747589888999999999828----8997489998775780679999999887----57988999808888564
Q gi|254780918|r 67 PLISVIMPVYKIKKEWLEMAIESVRSQ----IYSHWELCIAEDCSGDIETVSLLKKYAN----MDSRIKVVFRAKNGHIS 138 (623)
Q Consensus 67 P~iSIiip~yn~~~~~L~~~i~Si~~Q----ty~~~EliivdD~S~d~~~~~~l~~~~~----~d~ri~~~~~~~n~g~~ 138 (623)
|.+.++. .|..+.-.+++..+.+.+. ....|+++..+..--..+...+.++... .+.|+.++... ...+.
T Consensus 18 ~~~~~~L-lyG~d~glv~e~~~~l~~~~~~~~~~~f~~~~l~~~el~~d~~~l~de~~t~slF~~~rlI~i~~~-~d~~~ 95 (343)
T PRK06585 18 GKIRAVL-LYGPDRGLVRERARRLAKSVVDDPDDPFAVVRLDGDELDADPARLEDEANTISLFGGRRLIWVRAG-GKSLA 95 (343)
T ss_pred CCCEEEE-EECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECC-CHHHH
T ss_conf 4765899-963876479999999999725566787415774799883399999999847687689848997268-72569
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 899999996599899997698752732079999998732475542
Q gi|254780918|r 139 AASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEII 183 (623)
Q Consensus 139 ~a~N~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~i 183 (623)
.+....++...++-++++.+++.=....|.. .+..++.+.+|
T Consensus 96 ~~l~~~l~~~~~~~~lIi~a~~L~k~skLrk---~~e~~~~~~~i 137 (343)
T PRK06585 96 AALKALLAEPPGDAFIVIEAGDLKKGSSLRK---LFETAASAAAI 137 (343)
T ss_pred HHHHHHHHCCCCCEEEEEECCCCCCCCHHHH---HHHHCCCEEEE
T ss_conf 9999998178998289997389773118999---99864786999
No 260
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=21.66 E-value=46 Score=12.54 Aligned_cols=181 Identities=14% Similarity=0.163 Sum_probs=81.8
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE--------------
Q ss_conf 888169999537745569999987642079751579971489981689999999863088827997--------------
Q gi|254780918|r 322 PPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVIT-------------- 387 (623)
Q Consensus 322 ~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~-------------- 387 (623)
++|+|.| ++...++.+++.+..+ ... ++|++-+--.+ ...+++........++.+..
T Consensus 20 PKpLvpi-----~gkPii~~ii~~l~~~-gi~--~iil~~gy~~~-~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (253)
T cd02524 20 PKPMVEI-----GGRPILWHIMKIYSHY-GHN--DFILCLGYKGH-VIKEYFLNYFLHNSDVTIDLGTNRIELHNSDIED 90 (253)
T ss_pred CCCCEEE-----CCEEHHHHHHHHHHHC-CCC--EEEEECCCCCH-HHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCC
T ss_conf 8003189-----9998999999999986-998--79995322511-3799987777615855899337727983366778
Q ss_pred ------ECCCCCCHHHHHHHHHHHCCC-CEEEEECCCCEEECHHHHHHHHHHHCCCC-EEEEEEEEECCCCCCCCCCCEE
Q ss_conf ------578887338898987861489-74744058827828168899887742898-1699537664676756778704
Q gi|254780918|r 388 ------DNTHPFNYSRINNNATLHAKG-QYFCFLNNDTEVINGQWLSEMMGIASQPQ-VGAVGARLWYRRKKLWKRSKRL 459 (623)
Q Consensus 388 ------~~~~~~n~s~~~N~g~~~a~g-eyilfLn~D~~v~~~~wL~~Ll~~~~~~~-vG~Vg~~ll~~~~~~~~~d~~i 459 (623)
+...+-+-+.+...+.....+ |.++++|.|+ +.+-+ +.+|+.+....+ ...+. .... +.
T Consensus 91 ~~i~~~~~~~~~~tgg~l~~~~~~l~~~e~flv~nGD~-l~d~d-l~~l~~~h~~~~~~~tl~---~v~~-----~~--- 157 (253)
T cd02524 91 WKVTLVDTGLNTMTGGRLKRVRRYLGDDETFMLTYGDG-VSDVN-INALIEFHRSHGKLATVT---AVHP-----PG--- 157 (253)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCC-CCCCC-HHHHHHHHHHCCCEEEEE---ECCC-----CC---
T ss_conf 60589853665503389999998748997399991552-34368-799999998669859999---6588-----88---
Q ss_pred EECCEE-ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHH
Q ss_conf 413254-0678656643225655557644222233444441110110204388889871799976876323168899999
Q gi|254780918|r 460 QHGGVI-MGINNIAGHKNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRI 538 (623)
Q Consensus 460 qhaG~v-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~ 538 (623)
.-|++ +.-++.. ..+.. .|... .. -+.+.+.++++++|+.+-. +. + .+ ..|+.-++
T Consensus 158 -~yG~v~~d~~~~v---~~f~E----KP~~~-------~~--~in~GiYv~~~~if~~i~~-~~--~--~~-e~d~~p~l 214 (253)
T cd02524 158 -RFGELDLDDDGQV---TSFTE----KPQGD-------GG--WINGGFFVLEPEVFDYIDG-DD--T--VF-EREPLERL 214 (253)
T ss_pred -CCCEEEECCCCEE---EEEEE----CCCCC-------CC--CCEEEEEEECHHHHHHCCC-CC--C--CH-HHHHHHHH
T ss_conf -8867999899859---99873----78887-------77--4214999988999954667-88--7--42-67899999
Q ss_pred HHCCCEEEE
Q ss_conf 974981998
Q gi|254780918|r 539 LEAGYRNVW 547 (623)
Q Consensus 539 ~~~G~r~v~ 547 (623)
.+.|.-..|
T Consensus 215 i~~g~l~~y 223 (253)
T cd02524 215 AKDGELMAY 223 (253)
T ss_pred HHCCCEEEE
T ss_conf 966997999
No 261
>cd01777 SNX27_RA SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=21.54 E-value=37 Score=13.15 Aligned_cols=17 Identities=29% Similarity=0.739 Sum_probs=12.7
Q ss_pred CCCCCC-CCCHHEEEEEH
Q ss_conf 444411-10110204388
Q gi|254780918|r 495 FTHSIS-AVTGACMVMSK 511 (623)
Q Consensus 495 ~~~~~s-avtgacllirr 511 (623)
..||++ |+++.|+++||
T Consensus 69 YiqNYssA~~~tCL~~RK 86 (87)
T cd01777 69 YVQNYTSAVPGTCLTARK 86 (87)
T ss_pred EEEECCCCCCCCEEEEEC
T ss_conf 997012578854688861
No 262
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase; InterPro: IPR004530 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases . This family describes the mitochondrial phenylalanyl-tRNA synthetases. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases.; GO: 0000166 nucleotide binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006432 phenylalanyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=21.45 E-value=36 Score=13.19 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=9.3
Q ss_pred HHHHHHCCCCCEEEEECCCCC
Q ss_conf 999863088827997578887
Q gi|254780918|r 373 LQKIQKKYPNLRVITDNTHPF 393 (623)
Q Consensus 373 l~~~~~~~~~~~~i~~~~~~~ 393 (623)
++-+--+.|+++++.....+|
T Consensus 325 ~AM~LF~IPDIRLlWS~D~~F 345 (460)
T TIGR00469 325 LAMLLFDIPDIRLLWSRDERF 345 (460)
T ss_pred HHHHHHCCCCEEEEEECCCCH
T ss_conf 998873488615662045302
No 263
>CHL00133 psbV photosystem II cytochrome c550; Validated
Probab=21.04 E-value=31 Score=13.60 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCC
Q ss_conf 899878999999997413343
Q gi|254780918|r 284 YAGKAGERALNEHFQRTGIAA 304 (623)
Q Consensus 284 ~~~~a~~~ai~~~l~R~g~~~ 304 (623)
.....++|..+.+...+-..+
T Consensus 50 ~q~k~GkrlFn~~C~~CH~GG 70 (163)
T CHL00133 50 EQVKRGKRLFNASCGACHVGG 70 (163)
T ss_pred HHHHHHHHHHHHHHHHHCCCC
T ss_conf 999989999998876511686
No 264
>pfam09949 DUF2183 Uncharacterized conserved protein (DUF2183). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=20.98 E-value=48 Score=12.45 Aligned_cols=80 Identities=15% Similarity=0.274 Sum_probs=41.2
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEE-CCCCCCHH
Q ss_conf 99999999741334322357753012136788888169999537745569999987642079751579971-48998168
Q gi|254780918|r 290 ERALNEHFQRTGIAAKAVFDGAQYRTHYMIPNPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIII-DNLSDDSK 368 (623)
Q Consensus 290 ~~ai~~~l~R~g~~~~~~~~~~~~r~~~~~~~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivV-dn~S~d~~ 368 (623)
-..+.+.+++.|.|.-..... .|.. ...+.+-.. ..+.=...|+.|++ .+|+...|+| |+|-.|++
T Consensus 13 y~~l~~Fl~~~~~P~G~l~Lr-----~~~~----~~~~~~~~~--~~~hK~~~i~~il~--~fP~~kfiLiGDsgq~Dpe 79 (100)
T pfam09949 13 YPFLRRFLERNGFPPGPLLLR-----DWGP----SLLGFFRSG--AQSHKRDAIERILR--DFPDRKFILIGDSGQHDPE 79 (100)
T ss_pred HHHHHHHHHHCCCCCCCEEHH-----CCCC----CCCCCCCCC--CHHHHHHHHHHHHH--HCCCCEEEEECCCCCCCHH
T ss_conf 999999998769999855051-----2886----546552687--42563999999999--7889708995688776999
Q ss_pred HHHHHHHHHHCCCCCEE
Q ss_conf 99999998630888279
Q gi|254780918|r 369 TFLYLQKIQKKYPNLRV 385 (623)
Q Consensus 369 t~~~l~~~~~~~~~~~~ 385 (623)
...+++.++|+...
T Consensus 80 ---iY~~ia~~~P~rI~ 93 (100)
T pfam09949 80 ---IYAEIAREFPGRIL 93 (100)
T ss_pred ---HHHHHHHHCCCCEE
T ss_conf ---99999997975589
No 265
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=20.88 E-value=48 Score=12.44 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=15.4
Q ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 99987642079751579971489981689999999
Q gi|254780918|r 341 ICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQK 375 (623)
Q Consensus 341 ~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~ 375 (623)
..++++.+.. ...++|+++.+++.+ +..+++++
T Consensus 41 P~l~~~~~~~-~~~~~vv~~sdg~~~-~~~~f~~~ 73 (114)
T cd02967 41 PVIRSIARAE-ADWLDVVLASDGEKA-EHQRFLKK 73 (114)
T ss_pred HHHHHHHHHH-CCCEEEEEEECCCHH-HHHHHHHH
T ss_conf 7899999971-786799999789979-99999997
No 266
>PRK12452 cardiolipin synthetase; Reviewed
Probab=20.82 E-value=48 Score=12.43 Aligned_cols=79 Identities=9% Similarity=0.025 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHH-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCC-CCCHHHHHHHHHHHCCCCEEE
Q ss_conf 8988899999999982-88997489998775780679999999887579889998088-885648999999965998999
Q gi|254780918|r 77 KIKKEWLEMAIESVRS-QIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAK-NGHISAASNSAAQLATSEWLA 154 (623)
Q Consensus 77 n~~~~~L~~~i~Si~~-Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~-n~g~~~a~N~~l~~a~Ge~i~ 154 (623)
|+ ++...+.++.|.+ |.+=+.|--|..|+..-....+.|.+-++..-+++++.-.- ..+.....-.-++.+.++...
T Consensus 147 ~G-~~~f~~ll~~I~~A~~~I~le~YI~~~D~~g~~~~~~L~~aA~rGV~VrvL~D~~GS~~~~~~~~~~l~~~Gi~v~~ 225 (509)
T PRK12452 147 NG-DQTFSEILQAIEQAKHHIHIQYYIYKSDEIGTKVRDALIKKAKDGVIVRFLYDGLGSNTLRRRFLQPMKEAGIEIVE 225 (509)
T ss_pred CH-HHHHHHHHHHHHHHCCEEEEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCEEEE
T ss_conf 98-99999999999986029999999980782799999999999977998999998888877799999999968978999
Q ss_pred EE
Q ss_conf 97
Q gi|254780918|r 155 LL 156 (623)
Q Consensus 155 ~l 156 (623)
|.
T Consensus 226 f~ 227 (509)
T PRK12452 226 FD 227 (509)
T ss_pred EC
T ss_conf 76
No 267
>KOG2373 consensus
Probab=20.53 E-value=42 Score=12.80 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=18.2
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf 99965998999976987527320799999
Q gi|254780918|r 144 AAQLATSEWLALLDHDDLLHPTALYYVAD 172 (623)
Q Consensus 144 ~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~ 172 (623)
++..+++--..-|-++..+.|..+.-..+
T Consensus 136 al~~~t~~~t~~LP~g~~~lP~~~LPyLE 164 (514)
T KOG2373 136 ALYEATKALTFALPHGEILLPQLVLPYLE 164 (514)
T ss_pred HHHHHCCCEEEECCCCCCCCCHHHHHHHH
T ss_conf 77641486378726654348277778898
Done!