HHsearch alignment for GI: 254780918 and conserved domain: pfam05679
>pfam05679 CHGN Chondroitin N-acetylgalactosaminyltransferase.
Probab=97.75 E-value=0.0029 Score=38.24 Aligned_cols=209 Identities=13% Similarity=0.141 Sum_probs=115.9
Q ss_pred CCCCCEEEEEECCCC-HHHHHHHHHHHHH---CCCCCCEEEEE--ECC--CCCC-HHHHHHHHHHHHCCCCCEE--EEEC
Q ss_conf 888816999953774-5569999987642---07975157997--148--9981-6899999998630888279--9757
Q gi|254780918|r 321 NPPPLVSIIIPTYNH-HHLLKICLESIYH---KTTYSSFEVII--IDN--LSDD-SKTFLYLQKIQKKYPNLRV--ITDN 389 (623)
Q Consensus 321 ~~~P~VSIIIp~~n~-~~~l~~cl~Sl~~---~t~y~~~Eiiv--Vdn--~S~d-~~t~~~l~~~~~~~~~~~~--i~~~ 389 (623)
T Consensus 244 te~trV~iIlPL~~r~~~~f~rFl~~ye~vCL~~~-~n~~L~vv~~~~~~~~~~~~~~~~l~~~l~~ky~~~~i~~i~v~ 322 (498)
T pfam05679 244 TESTRVHILLPLAGRQVPTALRFLENFERVCLEPQ-DNTFLTLILYYRPAESPSKGDNDNLALELRRRYPGARIAWLSVR 322 (498)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCC-CCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 56881899995788757999999999999965889-97699999960765553033589999999965888612699936
Q ss_pred CCCCCHHHHHHHHHHHCCCC-EEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECC
Q ss_conf 88873388989878614897-47440588278281688998877428981699537664676756778704413254067
Q gi|254780918|r 390 THPFNYSRINNNATLHAKGQ-YFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGI 468 (623)
Q Consensus 390 ~~~~n~s~~~N~g~~~a~ge-yilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~ 468 (623)
T Consensus 323 ~~~fSr~~~ld~~a~k~~~d~L~f~~dvd~~-f~~~fLnRcR~Nti------~g~Qvf~Pi~Fs~Y-~P~i~~~~~~~-- 392 (498)
T pfam05679 323 LGAFSRGVALDLASKKHGLDTLLFLCDVDMV-FTSDFLNRCRMNTI------QGFQVYFPIVFSEY-DPEWSSARLPP-- 392 (498)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEECCCE-ECHHHHHHHHHHCC------CCCEEEEECCCCCC-CCCEECCCCCC--
T ss_conf 8876568999999875799749999605706-75889989876143------67357861223434-87521078899--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHH-HHCCCCHHHHHHHCCHHHHHHHHHHCC-CEEE
Q ss_conf 86566432256555576442222334444411101102043888898-717999768763231688999999749-8199
Q gi|254780918|r 469 NNIAGHKNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFM-HVGGFDEKNTPVVFSDIDLCLRILEAG-YRNV 546 (623)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~-~iGGfDE~~~~~~~eDvDlclR~~~~G-~r~v 546 (623)
T Consensus 393 ------~~~~~~i-~~~~G~~~-~----~~f----g~~c~Y~sDy~~ar~~~~d~~i~g~g~edv~l~~~f~~~~~l~Vf 456 (498)
T pfam05679 393 ------ECETCDV-GQESGYFD-R----FGY----GVACFYKSDYVAARAGGFDTEIEGWGLEDVDLLEKFLRAGSLHVL 456 (498)
T ss_pred ------CCCCCCC-CCCCCCCC-C----CCC----CEEEEECCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf ------7555543-57777233-5----899----708871115667631788732235454147899999735965899
Q ss_pred ECCCEEEEEE
Q ss_conf 8475499951
Q gi|254780918|r 547 WTPHADLYHD 556 (623)
Q Consensus 547 ~~P~a~v~H~ 556 (623)
T Consensus 457 Ra~ep~L~h~ 466 (498)
T pfam05679 457 RAVEPGLVHI 466 (498)
T ss_pred ECCCCCEEEE
T ss_conf 7789985887