HHsearch alignment for GI: 254780918 and conserved domain: pfam07507
>pfam07507 WavE WavE lipopolysaccharide synthesis. These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide.
Probab=94.85 E-value=0.067 Score=29.94 Aligned_cols=104 Identities=14% Similarity=0.176 Sum_probs=59.5
Q ss_pred EEEEE--CCCCC-----CHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC-----
Q ss_conf 89997--47589-----8889999999998288997489998775780679999999887579889998088885-----
Q gi|254780918|r 69 ISVIM--PVYKI-----KKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGH----- 136 (623)
Q Consensus 69 iSIii--p~yn~-----~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g----- 136 (623)
T Consensus 1 IsvViQGPV~~~~~r~~~~~it~~cl~SiR~-~lP~a~IIlSTW~~~d~s~l~~Dqii~s~DPG~~~~~~-~~~~~~~N~ 78 (310)
T pfam07507 1 ISVVVQGPVQAYQGREQEKGITQKCLASIRT-HLPGAEIILSTWPGQDLSGLDYDQIVISDDPGSNIVVY-DGAPQPLNN 78 (310)
T ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHH-HCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCC-CCCCCCCCH
T ss_conf 9699967755556754430589999999997-68998599970789876668834078658998663365-898775532
Q ss_pred --HHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf --64899999996599899997698752732079999998
Q gi|254780918|r 137 --ISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAI 174 (623)
Q Consensus 137 --~~~a~N~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l 174 (623)
T Consensus 79 NRQIvST~aGL~~v~t~YaiKlRsD~~Lt~~~~~~i~~~~ 118 (310)
T pfam07507 79 NRQIVSTLAGLKAVKTPYAIKLRSDNYLTGNGFVEIQEQY 118 (310)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHCCC
T ss_conf 2679999878987366013664022210540688861004