HHsearch alignment for GI: 254780918 and conserved domain: pfam07507

>pfam07507 WavE WavE lipopolysaccharide synthesis. These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide.
Probab=94.39  E-value=0.079  Score=29.50  Aligned_cols=103  Identities=20%  Similarity=0.309  Sum_probs=54.9

Q ss_pred             EEEEE--ECC------CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE--EECCCCCCH
Q ss_conf             69999--537------74556999998764207975157997148998168999999986308882799--757888733
Q gi|254780918|r  326 VSIII--PTY------NHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVI--TDNTHPFNY  395 (623)
Q Consensus       326 VSIII--p~~------n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i--~~~~~~~n~  395 (623)
T Consensus         1 IsvViQGPV~~~~~r~~~~~it~~cl~SiR~~--lP~a~IIlSTW~~~d~s~l~~Dqii~s~DPG~~~~~~~~~~~~~N~   78 (310)
T pfam07507         1 ISVVVQGPVQAYQGREQEKGITQKCLASIRTH--LPGAEIILSTWPGQDLSGLDYDQIVISDDPGSNIVVYDGAPQPLNN   78 (310)
T ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCH
T ss_conf             96999677555567544305899999999976--8998599970789876668834078658998663365898775532


Q ss_pred             HHH---HHHHHHHCCCCEEEEECCCCEEECHHHHHHHHH
Q ss_conf             889---898786148974744058827828168899887
Q gi|254780918|r  396 SRI---NNNATLHAKGQYFCFLNNDTEVINGQWLSEMMG  431 (623)
Q Consensus       396 s~~---~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~  431 (623)
T Consensus        79 NRQIvST~aGL~~v~t~YaiKlRsD~~L-t~~~~~~i~~  116 (310)
T pfam07507        79 NRQIVSTLAGLKAVKTPYAIKLRSDNYL-TGNGFVEIQE  116 (310)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEECCCCC-CCCHHHHHHC
T ss_conf             2679999878987366013664022210-5406888610