HHsearch alignment for GI: 254780918 and conserved domain: pfam07507
>pfam07507 WavE WavE lipopolysaccharide synthesis. These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide.
Probab=94.39 E-value=0.079 Score=29.50 Aligned_cols=103 Identities=20% Similarity=0.309 Sum_probs=54.9
Q ss_pred EEEEE--ECC------CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE--EECCCCCCH
Q ss_conf 69999--537------74556999998764207975157997148998168999999986308882799--757888733
Q gi|254780918|r 326 VSIII--PTY------NHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVI--TDNTHPFNY 395 (623)
Q Consensus 326 VSIII--p~~------n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i--~~~~~~~n~ 395 (623)
T Consensus 1 IsvViQGPV~~~~~r~~~~~it~~cl~SiR~~--lP~a~IIlSTW~~~d~s~l~~Dqii~s~DPG~~~~~~~~~~~~~N~ 78 (310)
T pfam07507 1 ISVVVQGPVQAYQGREQEKGITQKCLASIRTH--LPGAEIILSTWPGQDLSGLDYDQIVISDDPGSNIVVYDGAPQPLNN 78 (310)
T ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCH
T ss_conf 96999677555567544305899999999976--8998599970789876668834078658998663365898775532
Q ss_pred HHH---HHHHHHHCCCCEEEEECCCCEEECHHHHHHHHH
Q ss_conf 889---898786148974744058827828168899887
Q gi|254780918|r 396 SRI---NNNATLHAKGQYFCFLNNDTEVINGQWLSEMMG 431 (623)
Q Consensus 396 s~~---~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~ 431 (623)
T Consensus 79 NRQIvST~aGL~~v~t~YaiKlRsD~~L-t~~~~~~i~~ 116 (310)
T pfam07507 79 NRQIVSTLAGLKAVKTPYAIKLRSDNYL-TGNGFVEIQE 116 (310)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCC-CCCHHHHHHC
T ss_conf 2679999878987366013664022210-5406888610