RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780918|ref|YP_003065331.1| glycosyl transferase family
protein [Candidatus Liberibacter asiaticus str. psy62]
         (623 letters)



>gnl|CDD|133027 cd04184, GT2_RfbC_Mx_like, Myxococcus xanthus RfbC like proteins
           are required for O-antigen biosynthesis.  The rfbC gene
           encodes a predicted protein of 1,276 amino acids, which
           is required for O-antigen biosynthesis in Myxococcus
           xanthus. It is a subfamily of Glycosyltransferase Family
           GT2, which includes diverse families of glycosyl
           transferases with a common GT-A type structural fold,
           which has two tightly associated beta/alpha/beta domains
           that tend to form a continuous central sheet of at least
           eight beta-strands. These are enzymes that catalyze the
           transfer of sugar moieties from activated donor
           molecules to specific acceptor molecules, forming
           glycosidic bonds.
          Length = 202

 Score =  336 bits (864), Expect = 1e-92
 Identities = 124/204 (60%), Positives = 153/204 (75%), Gaps = 2/204 (0%)

Query: 67  PLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRI 126
           PLIS++MPVY   +++L  AIESVR+Q Y +WELCIA+D S D E   +LKKYA  D RI
Sbjct: 1   PLISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRI 60

Query: 127 KVVFRAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSD 186
           KVVFR +NG ISAA+NSA +LAT E++ALLDHDD L P ALY V  A+N +P+A++IYSD
Sbjct: 61  KVVFREENGGISAATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSD 120

Query: 187 EDKINENQIRSGPYFKYDFNPELFHVHNMITHLGVYRTETFKKIGGFREKFEGAQDYDLV 246
           EDKI+E   RS P+FK D++P+L    N I HL VYR    +++GGFRE FEGAQDYDLV
Sbjct: 121 EDKIDEGGKRSEPFFKPDWSPDLLLSQNYIGHLLVYRRSLVRQVGGFREGFEGAQDYDLV 180

Query: 247 LRFLENIDLSQIIHIPRVLYHWRM 270
           LR  E+ D  +I HIPRVLYHWR 
Sbjct: 181 LRVSEHTD--RIAHIPRVLYHWRA 202



 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 7/99 (7%)

Query: 324 PLVSIIIPTYN-HHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPN 382
           PL+SI++P YN     L+  +ES+    TY ++E+ I D+ S D +    L+K   + P 
Sbjct: 1   PLISIVMPVYNTPEKYLREAIESV-RAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPR 59

Query: 383 LRVI--TDNTHPFNYSRINNNATLHAKGQYFCFLNNDTE 419
           ++V+   +N      S   N+A   A G++   L++D E
Sbjct: 60  IKVVFREENGGI---SAATNSALELATGEFVALLDHDDE 95


>gnl|CDD|133055 cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen
           biosynthesis.  Escherichia coli WfgS and Shigella
           dysenteriae WfeV are glycosyltransferase 2 family
           enzymes involved in O-antigen biosynthesis. GT-2 enzymes
           have GT-A type structural fold, which has two tightly
           associated beta/alpha/beta domains that tend to form a
           continuous central sheet of at least eight beta-strands.
           These are enzymes that catalyze the transfer of sugar
           moieties from activated donor molecules to specific
           acceptor molecules, forming glycosidic bonds.
           Glycosyltransferases have been classified into more than
           90 distinct sequence based families.
          Length = 202

 Score =  127 bits (322), Expect = 9e-30
 Identities = 67/209 (32%), Positives = 95/209 (45%), Gaps = 8/209 (3%)

Query: 70  SVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVV 129
           S+I P Y  + E LE  I+SV SQ Y + E  + +  S D  TV ++KKY   D     +
Sbjct: 1   SIITPTYN-QAETLEETIDSVLSQTYPNIEYIVIDGGSTD-GTVDIIKKYE--DKITYWI 56

Query: 130 FRAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDK 189
                G I  A N    LAT + +  L+ DD L P AL  V  A   +P  +++Y D   
Sbjct: 57  SEPDKG-IYDAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLL 115

Query: 190 INENQIRSGPYFKYDFNPELFHVHNMITHLGV-YRTETFKKIGGFREKFEGAQDYDLVLR 248
           ++EN    G      F  +       I H    +R   F+K GGF E +  A DYDL+LR
Sbjct: 116 VDENGRVIGRRRPPPFLDKFLLYGMPICHQATFFRRSLFEKYGGFDESYRIAADYDLLLR 175

Query: 249 FLENIDLSQIIHIPRVLYHWRMHDNSTAQ 277
            L         ++P VL  +R+   S+  
Sbjct: 176 LLLA--GKIFKYLPEVLAAFRLGGVSSTS 202



 Score = 61.8 bits (151), Expect = 5e-10
 Identities = 56/226 (24%), Positives = 86/226 (38%), Gaps = 40/226 (17%)

Query: 327 SIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVI 386
           SII PTYN    L+  ++S+  +T Y + E I+ID  S D  T   ++K + K      I
Sbjct: 1   SIITPTYNQAETLEETIDSVLSQT-YPNIEYIVIDGGSTDG-TVDIIKKYEDK--ITYWI 56

Query: 387 T--DNTHPFNYSRINNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGAR 444
           +  D      Y  + N     A G    FLN+D  ++ G  L+ +   A  P+V  V   
Sbjct: 57  SEPDKGI---YDAM-NKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGD 112

Query: 445 LWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSVPNYQAFAMHFTHSISAVTG 504
           +    +            G ++G        +K       + + QA              
Sbjct: 113 VLLVDE-----------NGRVIGRRRPPPFLDKFLLYGMPICH-QATFFR---------- 150

Query: 505 ACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPH 550
                 +  F   GGFDE     + +D DL LR+L AG    + P 
Sbjct: 151 ------RSLFEKYGGFDESYR--IAADYDLLLRLLLAGKIFKYLPE 188


>gnl|CDD|133029 cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2
           of unknown function.  GT-2 includes diverse families of
           glycosyltransferases with a common GT-A type structural
           fold, which has two tightly associated beta/alpha/beta
           domains that tend to form a continuous central sheet of
           at least eight beta-strands. These are enzymes that
           catalyze the transfer of sugar moieties from activated
           donor molecules to specific acceptor molecules, forming
           glycosidic bonds. Glycosyltransferases have been
           classified into more than 90 distinct sequence based
           families.
          Length = 166

 Score =  115 bits (291), Expect = 3e-26
 Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 10/132 (7%)

Query: 328 IIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVIT 387
           III  YN    LK CL+S+    TY  FEVI++DN S D      ++ +++ +P +R+I 
Sbjct: 1   IIIVNYNSLEYLKACLDSLL-AQTYPDFEVIVVDNASTD----GSVELLRELFPEVRLIR 55

Query: 388 DNTHPFNYSRINNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLW- 446
            N     +   NN     AKG Y   LN DT V  G  L  +      P VG VG ++  
Sbjct: 56  -NGENLGFGAGNNQGIREAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPKVSG 114

Query: 447 ---YRRKKLWKR 455
                R+++++ 
Sbjct: 115 AFLLVRREVFEE 126



 Score = 68.4 bits (168), Expect = 6e-12
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 502 VTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHDE 557
           V+GA +++ ++ F  VGGFDE      + D+DLCLR   AGYR ++ P A +YH  
Sbjct: 112 VSGAFLLVRREVFEEVGGFDEDFFLY-YEDVDLCLRARLAGYRVLYVPQAVIYHHG 166



 Score = 61.8 bits (151), Expect = 5e-10
 Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 46/186 (24%)

Query: 71  VIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVF 130
           +I+  Y    E+L+  ++S+ +Q Y  +E+ + ++ S D  +V LL++       ++++ 
Sbjct: 1   IIIVNYN-SLEYLKACLDSLLAQTYPDFEVIVVDNASTD-GSVELLRELF---PEVRLIR 55

Query: 131 RAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKI 190
             +N    A +N   + A  +++ LL+ D ++ P AL  + DA   +P+  I+       
Sbjct: 56  NGENLGFGAGNNQGIREAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIV------- 108

Query: 191 NENQIRSGPYFKYDFNPELFHVHNMITHLG---VYRTETFKKIGGFREKF----EGAQDY 243
                  GP                ++  G   + R E F+++GGF E F    E   D 
Sbjct: 109 -------GP---------------KVS--GAFLLVRREVFEEVGGFDEDFFLYYE---DV 141

Query: 244 DLVLRF 249
           DL LR 
Sbjct: 142 DLCLRA 147


>gnl|CDD|144210 pfam00535, Glycos_transf_2, Glycosyl transferase family 2.  Diverse
           family, transferring sugar from UDP-glucose,
           UDP-N-acetyl- galactosamine, GDP-mannose or
           CDP-abequose, to a range of substrates including
           cellulose, dolichol phosphate and teichoic acids.
          Length = 168

 Score =  105 bits (263), Expect = 5e-23
 Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 10/170 (5%)

Query: 70  SVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVV 129
           SVI+P Y  ++++LE  +ES+ +Q Y ++E+ + +D S D  TV + ++YA  D RI+V+
Sbjct: 1   SVIIPTYN-EEKYLEECLESLLNQTYPNFEIIVVDDGSTD-GTVEIAEEYAKKDPRIRVI 58

Query: 130 FRAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYS---- 185
              +N   +AA N+  +LAT +++  LD DD + P  L  + + +  N    +I S    
Sbjct: 59  RLEENLGKAAARNAGLKLATGDYILFLDADDEVAPDWLEKLVELLEKNGADIVIGSRVVI 118

Query: 186 ----DEDKINENQIRSGPYFKYDFNPELFHVHNMITHLGVYRTETFKKIG 231
                 D             K         V  +I    +YR E  +++ 
Sbjct: 119 FGETRLDGRALRFELLLLLGKLGDRSLGLKVLFLIGSNALYRREALEELL 168



 Score = 91.0 bits (226), Expect = 8e-19
 Identities = 42/192 (21%), Positives = 72/192 (37%), Gaps = 24/192 (12%)

Query: 327 SIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVI 386
           S+IIPTYN    L+ CLES+    TY +FE+I++D+ S D  T    ++  KK P +RVI
Sbjct: 1   SVIIPTYNEEKYLEECLESLL-NQTYPNFEIIVVDDGSTDG-TVEIAEEYAKKDPRIRVI 58

Query: 387 TDNTHPFNYSRINNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLW 446
                    +   N     A G Y  FL+ D EV    WL +++ +  +     V     
Sbjct: 59  R-LEENLGKAAARNAGLKLATGDYILFLDADDEVAPD-WLEKLVELLEKNGADIV----- 111

Query: 447 YRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSVPNYQAFAMHFTHSISAVTGAC 506
                           G  + I        +  +    +   +         +  + G+ 
Sbjct: 112 ---------------IGSRVVIFGETRLDGRALRFELLLLLGKLGDRSLGLKVLFLIGSN 156

Query: 507 MVMSKKCFMHVG 518
            +  ++    + 
Sbjct: 157 ALYRREALEELL 168


>gnl|CDD|132997 cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A)
           includes diverse families of glycosyl transferases with
           a common GT-A type structural fold.
           Glycosyltransferases (GTs) are enzymes that synthesize
           oligosaccharides, polysaccharides, and glycoconjugates
           by transferring the sugar moiety from an activated
           nucleotide-sugar donor to an acceptor molecule, which
           may be a growing oligosaccharide, a lipid, or a protein.
            Based on the stereochemistry of the donor and acceptor
           molecules, GTs are classified as either retaining or
           inverting enzymes. To date, all GT structures adopt one
           of two possible folds, termed GT-A fold and GT-B fold.
           This hierarchy includes diverse families of glycosyl
           transferases with a common GT-A type structural fold,
           which has two tightly associated beta/alpha/beta domains
           that tend to form a continuous central sheet of at least
           eight beta-strands. The majority of the proteins in this
           superfamily are Glycosyltransferase family 2 (GT-2)
           proteins. But it also includes families GT-43, GT-6,
           GT-8, GT13 and GT-7; which are evolutionarily related to
           GT-2 and share structure similarities.
          Length = 156

 Score = 94.1 bits (234), Expect = 1e-19
 Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 34/183 (18%)

Query: 71  VIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVF 130
           VI+P Y  ++ +LE  +ES+ +Q Y ++E+ + +D S D  T+ +L++YA  D R+  V 
Sbjct: 1   VIIPAYN-EEPYLERCLESLLAQTYPNFEVIVVDDGSTD-GTLEILEEYAKKDPRVIRVI 58

Query: 131 RAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKI 190
             +N  ++AA N+  + A  E++  LD DDLL P  L  +   +  +P A+ +       
Sbjct: 59  NEENQGLAAARNAGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGG----- 113

Query: 191 NENQIRSGPYFKYDFNPELFHVHNMITHLGVYRTETFKKIGGFREKFE-GAQDYDLVLRF 249
                                  N++     +R E  ++IGGF E    G +D D +LR 
Sbjct: 114 ---------------------PGNLL-----FRRELLEEIGGFDEALLSGEEDDDFLLRL 147

Query: 250 LEN 252
           L  
Sbjct: 148 LRG 150



 Score = 77.9 bits (192), Expect = 8e-15
 Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 5/127 (3%)

Query: 328 IIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVIT 387
           +IIP YN    L+ CLES+    TY +FEVI++D+ S D  T   L++  KK P +  + 
Sbjct: 1   VIIPAYNEEPYLERCLESLL-AQTYPNFEVIVVDDGSTD-GTLEILEEYAKKDPRVIRVI 58

Query: 388 DNTHPFNYSRINNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVG--ARL 445
           +  +    +   N     A+G+Y  FL+ D  ++       +  + + P+  AVG    L
Sbjct: 59  NEENQGLAAAR-NAGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGPGNL 117

Query: 446 WYRRKKL 452
            +RR+ L
Sbjct: 118 LFRRELL 124


>gnl|CDD|31409 COG1216, COG1216, Predicted glycosyltransferases [General function
           prediction only].
          Length = 305

 Score = 90.6 bits (224), Expect = 1e-18
 Identities = 64/244 (26%), Positives = 110/244 (45%), Gaps = 25/244 (10%)

Query: 324 PLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLS-DDSKTFLYLQKIQKKYPN 382
           P +SIII TYN    L  CL S+    TY    ++++DN S D S   L      + +PN
Sbjct: 3   PKISIIIVTYNRGEDLVECLASLA-AQTYPDDVIVVVDNGSTDGSLEALK----ARFFPN 57

Query: 383 LRVITDNTHPFNYSRINNNATLHAKGQ---YFCFLNNDTEVINGQWLSEMM-GIASQPQV 438
           +R+I +  +   ++   N    +A  +   Y   LN DT V     L E++      P  
Sbjct: 58  VRLIENGENLG-FAGGFNRGIKYALAKGDDYVLLLNPDTVVEPD-LLEELLKAAEEDPAA 115

Query: 439 GAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSVPNYQAFAMHFTHS 498
           G VG  +    + L+   +  +  G+  G       +     +                 
Sbjct: 116 GVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEV------------ 163

Query: 499 ISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHDES 558
           +++++GAC+++ ++ F  VGGFDE+   + + D+DLCLR  +AGY+  + P A +YH   
Sbjct: 164 VASLSGACLLIRREAFEKVGGFDER-FFIYYEDVDLCLRARKAGYKIYYVPDAIIYHKIG 222

Query: 559 RTRK 562
            ++ 
Sbjct: 223 SSKG 226



 Score = 55.1 bits (132), Expect = 5e-08
 Identities = 45/205 (21%), Positives = 86/205 (41%), Gaps = 25/205 (12%)

Query: 65  NKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDS 124
           + P IS+I+  Y  + E L   + S+ +Q Y    + + ++ S D  ++  LK       
Sbjct: 1   SMPKISIIIVTY-NRGEDLVECLASLAAQTYPDDVIVVVDNGSTD-GSLEALKARFF--P 56

Query: 125 RIKVVFRAKNGHISAASNSAAQLATSE---WLALLDHDDLLHPTALYYVADAINNNPNAE 181
            ++++   +N   +   N   + A ++   ++ LL+ D ++ P  L  +  A   +P A 
Sbjct: 57  NVRLIENGENLGFAGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAG 116

Query: 182 II---------------YSDEDKINENQIRSGPYFKY--DFNPELFHVHNMITHLGVYRT 224
           ++                  E        R+ P  +   D +  L  V ++     + R 
Sbjct: 117 VVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRR 176

Query: 225 ETFKKIGGFREKFEG-AQDYDLVLR 248
           E F+K+GGF E+F    +D DL LR
Sbjct: 177 EAFEKVGGFDERFFIYYEDVDLCLR 201


>gnl|CDD|30811 COG0463, WcaA, Glycosyltransferases involved in cell wall
           biogenesis [Cell envelope biogenesis, outer membrane].
          Length = 291

 Score = 80.6 bits (196), Expect = 1e-15
 Identities = 50/277 (18%), Positives = 97/277 (35%), Gaps = 3/277 (1%)

Query: 65  NKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDS 124
             P +SV++P Y  ++E+L  A+ES+ +Q Y  +E+ + +D S D  T  +  +Y   D 
Sbjct: 1   MMPKVSVVIPTYN-EEEYLPEALESLLNQTYKDFEIIVVDDGSTD-GTTEIAIEYGAKDV 58

Query: 125 RIKVVFRAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIY 184
           R+  +   +NG + AA N+  + A  +++  LD DD  HP  L  +  A  +      + 
Sbjct: 59  RVIRLINERNGGLGAARNAGLEYARGDYIVFLDADD-QHPPELIPLVAAGGDGDYIARLD 117

Query: 185 SDEDKINENQIRSGPYFKYDFNPELFHVHNMITHLGVYRTETFKKIGGFREKFEGAQDYD 244
             +D     ++ S              + +    L +   +    +  F E         
Sbjct: 118 DRDDIWLPRKLLSKLVKLLGNRLLGVLIPDGFGDLRLLVRDAVDGLRAFLEGRSRFLRLL 177

Query: 245 LVLRFLENIDLSQIIHIPRVLYHWRMHDNSTAQKIGNKNYAGKAGERALNEHFQRTGIAA 304
           L    L   ++ + + + R+L   +        ++G      K     L+         A
Sbjct: 178 LRKLVLIRREVLEYLLLYRLLGASKRVLLGKLLRLGLLLLDSKLKAVPLDLLLLLGLFIA 237

Query: 305 KAVFDGAQYRTHYMIPNPPPLVSIIIPTYNHHHLLKI 341
                               L     P      L+ +
Sbjct: 238 LLSILLLLLLLLLRRLLGANLSEKGKPLLLIKLLILL 274



 Score = 57.8 bits (137), Expect = 9e-09
 Identities = 41/151 (27%), Positives = 59/151 (39%), Gaps = 4/151 (2%)

Query: 324 PLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNL 383
           P VS++IPTYN    L   LES+    TY  FE+I++D+ S D  T     +   K   +
Sbjct: 3   PKVSVVIPTYNEEEYLPEALESLL-NQTYKDFEIIVVDDGSTD-GTTEIAIEYGAKDVRV 60

Query: 384 RVITDNTHPFNYSRINNNATLHAKGQYFCFLNND-TEVINGQWLSEMMGIASQPQVGAVG 442
             +  N          N    +A+G Y  FL+ D         L    G           
Sbjct: 61  IRLI-NERNGGLGAARNAGLEYARGDYIVFLDADDQHPPELIPLVAAGGDGDYIARLDDR 119

Query: 443 ARLWYRRKKLWKRSKRLQHGGVIMGINNIAG 473
             +W  RK L K  K L +  + + I +  G
Sbjct: 120 DDIWLPRKLLSKLVKLLGNRLLGVLIPDGFG 150


>gnl|CDD|31408 COG1215, COG1215, Glycosyltransferases, probably involved in cell
           wall biogenesis [Cell envelope biogenesis, outer
           membrane].
          Length = 439

 Score = 75.4 bits (184), Expect = 4e-14
 Identities = 60/239 (25%), Positives = 91/239 (38%), Gaps = 33/239 (13%)

Query: 319 IPNPPPLVSIIIPTYN-HHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQ 377
                P VS+IIP YN    +L+  LES+     Y  +EVI++D+ S D +T+  L+++ 
Sbjct: 49  ADKLLPKVSVIIPAYNEEPEVLEETLESLL-SQDYPRYEVIVVDDGSTD-ETYEILEELG 106

Query: 378 KKYPNLRVITDNTHPFNYSRIN-NNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQP 436
            +Y     +              NN    AKG     L+ DT V     L E++     P
Sbjct: 107 AEYGPNFRVIYPEKKNGGKAGALNNGLKRAKGDVVVILDADT-VPEPDALRELVSPFEDP 165

Query: 437 QVGAVGARLWYRRKK----LWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSVPNYQAFA 492
            VGAV      R +     L  R + +++          A                    
Sbjct: 166 PVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGG---------------- 209

Query: 493 MHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHA 551
                 IS ++G+     +     VGG+ E     +  D DL LR+   GYR V+ P A
Sbjct: 210 -----LISFLSGSSSAFRRSALEEVGGWLEDT---ITEDADLTLRLHLRGYRVVYVPEA 260



 Score = 63.4 bits (153), Expect = 2e-10
 Identities = 48/222 (21%), Positives = 85/222 (38%), Gaps = 19/222 (8%)

Query: 42  SSLFHDTSPQFTKKILQNISQWQNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELC 101
                   P    +        +  P +SVI+P Y  + E LE  +ES+ SQ Y  +E+ 
Sbjct: 29  LGYLLLVLPLSRPRKKLPKDADKLLPKVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVI 88

Query: 102 IAEDCSGDIETVSLLKKYANMDSRIKVVFR--AKNGHISAASNSAAQLATSEWLALLDHD 159
           + +D S D ET  +L++          V     KNG  + A N+  + A  + + +LD D
Sbjct: 89  VVDDGSTD-ETYEILEELGAEYGPNFRVIYPEKKNGGKAGALNNGLKRAKGDVVVILDAD 147

Query: 160 DLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFK---YDFNPELFHVHNMI 216
            +  P AL  +     + P   ++ +    I      S    +    ++    +      
Sbjct: 148 TVPEPDALRELVSPFEDPPVGAVVGTPR--IRNRPDPSNLLGRIQAIEYLSAFYFRLRAA 205

Query: 217 THLG----------VYRTETFKKIGGFREKFEGAQDYDLVLR 248
           +  G           +R    +++GG+ E     +D DL LR
Sbjct: 206 SKGGLISFLSGSSSAFRRSALEEVGGWLEDT-ITEDADLTLR 246


>gnl|CDD|133016 cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the
           biosynthesis of succinoglycan.  Succinoglycan
           Biosynthesis Protein ExoA catalyzes the formation of a
           beta-1,3 linkage of the second sugar (glucose) of the
           succinoglycan with the galactose on the lipid carrie.
           Succinoglycan is an acidic exopolysaccharide that is
           important for invasion of the nodules. Succinoglycan is
           a high-molecular-weight polymer composed of repeating
           octasaccharide units. These units are synthesized on
           membrane-bound isoprenoid lipid carriers, beginning with
           galactose followed by seven glucose molecules, and
           modified by the addition of acetate, succinate, and
           pyruvate. ExoA is a membrane protein with a
           transmembrance domain at c-terminus.
          Length = 249

 Score = 73.4 bits (181), Expect = 1e-13
 Identities = 52/241 (21%), Positives = 86/241 (35%), Gaps = 44/241 (18%)

Query: 325 LVSIIIPTYNHHHLLKICLESIYHKTTYS--SFEVIIIDNLSDDSKTFLYLQKIQKKYPN 382
            VSIIIP  N    ++  LES+    +Y     E+I++D  S D  T   +Q+   K P 
Sbjct: 1   FVSIIIPVRNEEKYIEELLESL-LNQSYPKDLIEIIVVDGGSTD-GTREIVQEYAAKDPR 58

Query: 383 LRVITDNTHPFNYSRIN----NNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQV 438
           +R+I       N  RI     N    +++G     ++         ++ E++    +   
Sbjct: 59  IRLID------NPKRIQSAGLNIGIRNSRGDIIIRVDAHAVYPKD-YILELVEALKRTGA 111

Query: 439 GAV-GARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSVPNYQAFAMHFTH 497
             V G        K  K     Q   +  G    + ++    K    V            
Sbjct: 112 DNVGGPMETIGESKFQKAIAVAQSSPLGSG---GSAYRGGAVKIG-YVD----------- 156

Query: 498 SISAVTGACMVMSKKCFMHVGGFDEKNTPVVFS---DIDLCLRILEAGYRNVWTPHADLY 554
                T       ++ F  VGGFDE           D +L  R+ +AGY+   +P   +Y
Sbjct: 157 -----TVHHGAYRREVFEKVGGFDES-----LVRNEDAELNYRLRKAGYKIWLSPDIRVY 206

Query: 555 H 555
           +
Sbjct: 207 Y 207



 Score = 66.5 bits (163), Expect = 2e-11
 Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 28/203 (13%)

Query: 68  LISVIMPVYKIKKEWLEMAIESVRSQIYSH--WELCIAEDCSGDIETVSLLKKYANMDSR 125
            +S+I+PV   +K ++E  +ES+ +Q Y     E+ + +  S D  T  ++++YA  D R
Sbjct: 1   FVSIIIPVRNEEK-YIEELLESLLNQSYPKDLIEIIVVDGGSTD-GTREIVQEYAAKDPR 58

Query: 126 IKVVFRAKNGHISAASNSAAQLATSEWLALLD-HDDLLHPTALYYVADAINN--NPNA-- 180
           I+++   K    SA  N   + +  + +  +D H     P    Y+ + +       A  
Sbjct: 59  IRLIDNPK-RIQSAGLNIGIRNSRGDIIIRVDAHAVY--PKD--YILELVEALKRTGADN 113

Query: 181 -----EIIYSDEDKINENQIRSGP------YFKYDFNPELFHVHNMITHLGVYRTETFKK 229
                E I   + +      +S P       ++       +       H G YR E F+K
Sbjct: 114 VGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGYVDT---VHHGAYRREVFEK 170

Query: 230 IGGFREKFEGAQDYDLVLRFLEN 252
           +GGF E     +D +L  R  + 
Sbjct: 171 VGGFDESLVRNEDAELNYRLRKA 193


>gnl|CDD|133039 cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2
           of unknown function.  GT-2 includes diverse families of
           glycosyltransferases with a common GT-A type structural
           fold, which has two tightly associated beta/alpha/beta
           domains that tend to form a continuous central sheet of
           at least eight beta-strands. These are enzymes that
           catalyze the transfer of sugar moieties from activated
           donor molecules to specific acceptor molecules, forming
           glycosidic bonds. Glycosyltransferases have been
           classified into more than 90 distinct sequence based
           families.
          Length = 214

 Score = 69.2 bits (170), Expect = 3e-12
 Identities = 51/230 (22%), Positives = 94/230 (40%), Gaps = 47/230 (20%)

Query: 70  SVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVV 129
           +V+M  Y  +K +L   ++S+ +Q Y + EL I++D S D  TV ++K+Y + D  I ++
Sbjct: 1   AVLMATYNGEK-YLREQLDSILAQTYKNDELIISDDGSTD-GTVEIIKEYIDKDPFIIIL 58

Query: 130 FRAKNGHISAASN--SAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDE 187
            R    ++  A N  S  Q A  +++   D DD+  P  L  +  A   +    ++YSD 
Sbjct: 59  IRNG-KNLGVARNFESLLQAADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDL 117

Query: 188 DKINENQIRSGPYF------KYDFNPELFHVHNMITHLGVYRTETFKKIGG----FREKF 237
           + ++EN    G  F      K   +       N++T              G    F  + 
Sbjct: 118 ELVDENGNPIGESFFEYQKIKPGTSFNNLLFQNVVT--------------GCTMAFNREL 163

Query: 238 EGAQDYDLVLRFLENIDLS-------------QIIHIPRVLYHWRMHDNS 274
                 +L L F +   +              +++ +   L  +R H N+
Sbjct: 164 -----LELALPFPDADVIMHDWWLALLASAFGKVVFLDEPLILYRQHGNN 208


>gnl|CDD|133045 cd06423, CESA_like, CESA_like is  the cellulose synthase
           superfamily.  The cellulose synthase (CESA) superfamily
           includes a wide variety of glycosyltransferase family 2
           enzymes that share the common characteristic of
           catalyzing the elongation of polysaccharide chains. The
           members include cellulose synthase catalytic subunit,
           chitin synthase, glucan biosynthesis protein and other
           families of CESA-like proteins. Cellulose synthase
           catalyzes the polymerization reaction of cellulose, an
           aggregate of unbranched polymers of beta-1,4-linked
           glucose residues in  plants, most algae, some bacteria
           and fungi, and even some animals. In bacteria, algae and
           lower eukaryotes, there is a second unrelated type of
           cellulose synthase (Type II), which produces acylated
           cellulose, a derivative of cellulose. Chitin synthase
           catalyzes the incorporation of GlcNAc from substrate
           UDP-GlcNAc into chitin, which is a linear homopolymer of
           beta-(1,4)-linked GlcNAc residues and Glucan
           Biosynthesis protein catalyzes the elongation of
           beta-1,2 polyglucose chains of Glucan.
          Length = 180

 Score = 68.0 bits (167), Expect = 6e-12
 Identities = 46/200 (23%), Positives = 78/200 (39%), Gaps = 27/200 (13%)

Query: 328 IIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVIT 387
           II+P YN   +++  +ES+     Y   EVI++D+ S D  T   L+++   Y    ++ 
Sbjct: 1   IIVPAYNEEAVIERTIESL-LALDYPKLEVIVVDDGSTD-DTLEILEELAALYIRRVLVV 58

Query: 388 DNTHPFNYSRINNNATLHAKGQYFCFLNNDTEVINGQWLSEM-MGIASQPQVGAVGARLW 446
            +      +   N    HAKG     L+ DT ++    L  + +   + P+VGAV  R+ 
Sbjct: 59  RDKENGGKAGALNAGLRHAKGDIVVVLDADT-ILEPDALKRLVVPFFADPKVGAVQGRVR 117

Query: 447 YR--RKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSVPNYQAFAMHFTHSISAVTG 504
            R   + L     RLQ    +       G                  A      +  ++G
Sbjct: 118 VRNGSENLL---TRLQAIEYLSIFR--LGR----------------RAQSALGGVLVLSG 156

Query: 505 ACMVMSKKCFMHVGGFDEKN 524
           A     ++    VGG+DE  
Sbjct: 157 AFGAFRREALREVGGWDEDT 176



 Score = 61.9 bits (151), Expect = 5e-10
 Identities = 37/177 (20%), Positives = 74/177 (41%), Gaps = 13/177 (7%)

Query: 71  VIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVF 130
           +I+P Y  ++  +E  IES+ +  Y   E+ + +D S D +T+ +L++ A +  R  +V 
Sbjct: 1   IIVPAYN-EEAVIERTIESLLALDYPKLEVIVVDDGSTD-DTLEILEELAALYIRRVLVV 58

Query: 131 RAKNGH-ISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEI------I 183
           R K     + A N+  + A  + + +LD D +L P AL  +      +P          +
Sbjct: 59  RDKENGGKAGALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRV 118

Query: 184 YSDEDKINENQIRSGPYFKYDFNPELFHVHNMITHL----GVYRTETFKKIGGFREK 236
            +  + +            +            +  L    G +R E  +++GG+ E 
Sbjct: 119 RNGSENLLTRLQAIEYLSIFRLGRRAQSALGGVLVLSGAFGAFRREALREVGGWDED 175


>gnl|CDD|133042 cd06420, GT2_Chondriotin_Pol_N, N-terminal domain of Chondroitin
           polymerase functions as a GalNAc transferase.
           Chondroitin polymerase is a two domain, bi-functional
           protein. The N-terminal domain functions as a GalNAc
           transferase. The bacterial chondroitin polymerase
           catalyzes elongation of the chondroitin chain by
           alternatively transferring the GlcUA and GalNAc moiety
           from UDP-GlcUA and UDP-GalNAc to the non-reducing ends
           of the chondroitin chain. The enzyme consists of
           N-terminal and C-terminal domains in which the two
           active sites catalyze the addition of GalNAc and GlcUA,
           respectively. Chondroitin chains range from 40 to over
           100 repeating units of the disaccharide. Sulfated
           chondroitins are involved in the regulation of various
           biological functions such as central nervous system
           development, wound repair, infection, growth factor
           signaling, and morphogenesis, in addition to its
           conventional structural roles. In Caenorhabditis
           elegans, chondroitin is an essential factor for the worm
           to undergo cytokinesis and cell division. Chondroitin is
           synthesized as proteoglycans, sulfated and secreted to
           the cell surface or extracellular matrix.
          Length = 182

 Score = 58.4 bits (142), Expect = 6e-09
 Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 29/188 (15%)

Query: 71  VIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDS-RIKVV 129
           +I+  Y  + E LE+ ++SV +Q    +E+ IA+D S + ET  L++++ +     IK V
Sbjct: 1   LIITTYN-RPEALELVLKSVLNQSILPFEVIIADDGSTE-ETKELIEEFKSQFPIPIKHV 58

Query: 130 FRAKNGHISAAS-NSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDED 188
           ++   G   A   N A   A  ++L  +D D + HP    ++AD I     AE       
Sbjct: 59  WQEDEGFRKAKIRNKAIAAAKGDYLIFIDGDCIPHP---DFIADHIE---LAE------- 105

Query: 189 KINENQIRSGPYFKYD--FNPELFHVHNMITHLGVYRTETFKKIGGFREKFE--GAQDYD 244
                   SG     +           NM      ++ +    + GF E+F   G +D +
Sbjct: 106 ---PGVFLSGSRVLLNEKLTERGIRGCNM----SFWKKD-LLAVNGFDEEFTGWGGEDSE 157

Query: 245 LVLRFLEN 252
           LV R L +
Sbjct: 158 LVARLLNS 165



 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 328 IIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYP-NLRVI 386
           +II TYN    L++ L+S+ +++    FEVII D+ S +    L +++ + ++P  ++ +
Sbjct: 1   LIITTYNRPEALELVLKSVLNQSIL-PFEVIIADDGSTEETKEL-IEEFKSQFPIPIKHV 58

Query: 387 TDNTHPFNYSRINNNATLHAKGQYFCFLNND 417
                 F  ++I N A   AKG Y  F++ D
Sbjct: 59  WQEDEGFRKAKIRNKAIAAAKGDYLIFIDGD 89


>gnl|CDD|133035 cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2
           of unknown function.  GT-2 includes diverse families of
           glycosyltransferases with a common GT-A type structural
           fold, which has two tightly associated beta/alpha/beta
           domains that tend to form a continuous central sheet of
           at least eight beta-strands. These are enzymes that
           catalyze the transfer of sugar moieties from activated
           donor molecules to specific acceptor molecules, forming
           glycosidic bonds. Glycosyltransferases have been
           classified into more than 90 distinct sequence based
           families.
          Length = 229

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 53/224 (23%), Positives = 87/224 (38%), Gaps = 31/224 (13%)

Query: 328 IIIPTYNHHHLLKICLESIYH-KTTYSSFEVIIIDNLSDDSKTFLYLQKI-QKKYPNLRV 385
           ++I   N    L   L+S+         FEVI++D+ S D  T   L+    K    L++
Sbjct: 1   VVIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTD-GTVQILEFAAAKPNFQLKI 59

Query: 386 ITDNTHPFNYSRINNNATL--HAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAV-G 442
           + +N+      + N   T    AKG +    + D  V+   WL   +    + Q+G V G
Sbjct: 60  L-NNSRVSISGKKNALTTAIKAAKGDWIVTTDADC-VVPSNWLLTFVAFIQKEQIGLVAG 117

Query: 443 ARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSVPNYQAFAMHFTHSISAV 502
             ++++ K L  + +RL    ++  I    G                     F  +    
Sbjct: 118 PVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLG-----------------KPFMCN---- 156

Query: 503 TGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNV 546
            GA M   K+ F  VGGF E N  +   D +L L  + + Y  V
Sbjct: 157 -GANMAYRKEAFFEVGGF-EGNDHIASGDDELLLAKVASKYPKV 198


>gnl|CDD|133063 cd06913, beta3GnTL1_like, Beta 1, 3-N-acetylglucosaminyltransferase
           is essential for the formation of
           poly-N-acetyllactosamine .  This family includes human
           Beta3GnTL1 and related eukaryotic proteins. Human
           Beta3GnTL1 is a putative
           beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is
           expressed at various levels in most of tissues examined.
           Beta 1, 3-N-acetylglucosaminyltransferase has been found
           to be essential for the formation of
           poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a
           unique carbohydrate composed of N-acetyllactosamine
           repeats. It is often an important part of
           cell-type-specific oligosaccharide structures and some
           functional oligosaccharides. It has been shown that the
           structure and biosynthesis of poly-N-acetyllactosamine
           display a dramatic change during development and
           oncogenesis. Several members of beta-1,
           3-N-acetylglucosaminyltransferase have been identified.
          Length = 219

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 54/216 (25%), Positives = 87/216 (40%), Gaps = 51/216 (23%)

Query: 328 IIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVIT 387
           II+P +N    L  CLES+  +    + E+ + ++ S D K+   ++K +KK  +  VI 
Sbjct: 1   IILPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTD-KSAEIIEKWRKKLEDSGVIV 59

Query: 388 -----DNTHPFNYSRINNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVG 442
                ++  P       N A   + G+Y CFL++D +V        MM     PQ     
Sbjct: 60  LVGSHNSPSPKGVGYAKNQAIAQSSGRYLCFLDSD-DV--------MM-----PQ----- 100

Query: 443 ARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSVPNYQAFAMHFTHS---- 498
            R+            RLQ+   +   N+I G + +      S   Y  +    T      
Sbjct: 101 -RI------------RLQYEAALQHPNSIIGCQVRRIPED-STERYTRWINTLTREQLLT 146

Query: 499 -ISAVTGACMVM-----SKKCFMHVGGFDE--KNTP 526
            +    G  ++M     S++ F HVG FDE  K  P
Sbjct: 147 QVYTSHGPTVIMPTWFCSREWFSHVGPFDEGGKGVP 182



 Score = 44.8 bits (106), Expect = 8e-05
 Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 26/227 (11%)

Query: 71  VIMPVYKIKKEWLEMAIESVRSQIYSH-WELCIAEDCSGDIETVSLLKKYANMDSRIKVV 129
           +I+PV+   ++WL+  +ESV  Q +    EL +  D S D ++  +++K+        V+
Sbjct: 1   IILPVHN-GEQWLDECLESVLQQDFEGTLELSVFNDASTD-KSAEIIEKWRKKLEDSGVI 58

Query: 130 FRAKNGH------ISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEII 183
               + +      +  A N A   ++  +L  LD DD++ P  +    +A   +PN+ II
Sbjct: 59  VLVGSHNSPSPKGVGYAKNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNS-II 117

Query: 184 YSDEDKINENQIRSGPYFKYDFN--------PELFHVH--NMITHLGVYRTETFKKIGGF 233
                +I E+   S   +    N         +++  H   +I        E F  +G F
Sbjct: 118 GCQVRRIPED---STERYTRWINTLTREQLLTQVYTSHGPTVIMPTWFCSREWFSHVGPF 174

Query: 234 REKFEGAQDYDLVLRFLENIDLS-QIIHIPRVLYHWRMHDNSTAQKI 279
            E  +G  + DL L F E++     +  + R L  +R H  +T   +
Sbjct: 175 DEGGKGVPE-DL-LFFYEHLRKGGGVYRVDRCLLLYRYHPGATTHSV 219


>gnl|CDD|133038 cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in
           exopolysaccharide amylovora biosynthesis.  AmsE is a
           glycosyltransferase involved in exopolysaccharide
           amylovora biosynthesis in Erwinia amylovora. Amylovara
           is one of the three exopolysaccharide produced by E.
           amylovora. Amylovara-deficient mutants are
           non-pathogenic. It is a subfamily of Glycosyltransferase
           Family GT2, which includes diverse families of
           glycosyltransferases with a common GT-A type structural
           fold, which has two tightly associated beta/alpha/beta
           domains that tend to form a continuous central sheet of
           at least eight beta-strands. These are enzymes that
           catalyze the transfer of sugar moieties from activated
           donor molecules to specific acceptor molecules, forming
           glycosidic bonds.
          Length = 201

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 13/191 (6%)

Query: 70  SVIMPVY-KIKKEWLEMAIESVRSQIYSHWELCIAED--CSGDIETVSLLKKYANMDSRI 126
           SV+M VY K K E+L  A+ES+  Q     E+ + +D   +  +  V  L+++      +
Sbjct: 1   SVLMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEV--LEEFKR-KLPL 57

Query: 127 KVVFRAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEII--Y 184
           KVV   KN  +  A N   +  T +W+A +D DD+  P       D I  NP  +I+   
Sbjct: 58  KVVPLEKNRGLGKALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGG 117

Query: 185 SDEDKINENQI--RSGPYFKYDFNPELFHVHNMITHLGV-YRTETFKKIGGFREKFEGAQ 241
             E   + N I  R  P    D   +     +   H  V +R      +GG++      +
Sbjct: 118 VLEFDSDGNDIGKRRLPTSHDDIL-KFARRRSPFNHPTVMFRKSKVLAVGGYQ-DLPLVE 175

Query: 242 DYDLVLRFLEN 252
           DY L  R L N
Sbjct: 176 DYALWARMLAN 186


>gnl|CDD|133030 cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to
           eukaryotic DPM1.  A family of  bacterial enzymes related
           to eukaryotic DPM1; Although the mechanism of eukaryotic
           enzyme is well studied, the mechanism of the  bacterial
           enzymes is not well understood. The eukaryotic DPM1 is
           the catalytic subunit of eukaryotic Dolichol-phosphate
           mannose (DPM) synthase. DPM synthase is required for
           synthesis of the glycosylphosphatidylinositol (GPI)
           anchor, N-glycan precursor, protein O-mannose, and
           C-mannose. The enzyme has three subunits, DPM1, DPM2 and
           DPM3. DPM is synthesized from dolichol phosphate and
           GDP-Man on the cytosolic surface of the ER membrane by
           DPM synthase and then is flipped onto the luminal side
           and used as a donor substrate. This protein family
           belongs to Glycosyltransferase 2 superfamily.
          Length = 181

 Score = 45.2 bits (108), Expect = 6e-05
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 86  AIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKN-GHISAASNSA 144
            +++V   +   +E+   +D S D  T+ +L++ A  D R+KV+  ++N G  +A     
Sbjct: 18  RLKAVLESLGYDYEIIFVDDGSTD-RTLEILRELAARDPRVKVIRLSRNFGQQAA---LL 73

Query: 145 AQL--ATSEWLALLDHDDLLHPTAL 167
           A L  A  + +  +D  DL  P  L
Sbjct: 74  AGLDHARGDAVITMD-ADLQDPPEL 97



 Score = 40.2 bits (95), Expect = 0.002
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 13/66 (19%)

Query: 328 IIIPTYN-------HHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKY 380
           I++P YN        +  LK  LES+ +      +E+I +D+ S D +T   L+++  + 
Sbjct: 1   IVVPVYNEEENLPELYERLKAVLESLGY-----DYEIIFVDDGSTD-RTLEILRELAARD 54

Query: 381 PNLRVI 386
           P ++VI
Sbjct: 55  PRVKVI 60


>gnl|CDD|133022 cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member
           of the Glycosyltransferase 2 superfamily.  DPM1 is the
           catalytic subunit of eukaryotic dolichol-phosphate
           mannose (DPM) synthase. DPM synthase is required for
           synthesis of the glycosylphosphatidylinositol (GPI)
           anchor, N-glycan precursor, protein O-mannose, and
           C-mannose. In higher eukaryotes,the enzyme has three
           subunits, DPM1, DPM2 and DPM3. DPM is synthesized from
           dolichol phosphate and GDP-Man on the cytosolic surface
           of the ER membrane by DPM synthase and then is flipped
           onto the luminal side and used as a donor substrate. In
           lower eukaryotes, such as Saccharomyces cerevisiae and
           Trypanosoma brucei, DPM synthase consists of a single
           component (Dpm1p and TbDpm1, respectively) that
           possesses one predicted transmembrane region near the C
           terminus for anchoring to the ER membrane. In contrast,
           the Dpm1 homologues of higher eukaryotes, namely fission
           yeast, fungi, and animals, have no transmembrane region,
           suggesting the existence of adapter molecules for
           membrane anchoring. This family also includes bacteria
           and archaea DPM1_like enzymes. However, the enzyme
           structure and mechanism of function are not well
           understood. The UDP-glucose:dolichyl-phosphate
           glucosyltransferase (DPG_synthase) is a
           transmembrane-bound enzyme of the endoplasmic reticulum
           involved in protein N-linked glycosylation. This enzyme
           catalyzes the transfer of glucose from UDP-glucose to
           dolichyl phosphate. This protein family belongs to
           Glycosyltransferase 2 superfamily.
          Length = 185

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 328 IIIPTYNHHHLLKICLESIY-HKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVI 386
           ++IP YN    +   +E +         +E+I++D+ S D  T    +++  + P +RVI
Sbjct: 1   VVIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTD-GTAEIARELAARVPRVRVI 59

Query: 387 TDNTHPFNY 395
                  N+
Sbjct: 60  ---RLSRNF 65



 Score = 39.9 bits (94), Expect = 0.002
 Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 7/97 (7%)

Query: 71  VIMPVYKIKKEWLEMAIESVRS--QIYSHWELCIAEDCSGDIETVSLLKKYANMDSRIKV 128
           V++P Y  ++E +   +E + +  +    +E+ + +D S D  T  + ++ A    R++V
Sbjct: 1   VVIPAYN-EEENIPELVERLLAVLEEGYDYEIIVVDDGSTD-GTAEIARELAARVPRVRV 58

Query: 129 VFRAKN-GHISAASNSAAQLATSEWLALLDHDDLLHP 164
           +  ++N G   AA  +  + A  + +  +D  DL HP
Sbjct: 59  IRLSRNFGK-GAAVRAGFKAARGDIVVTMD-ADLQHP 93


>gnl|CDD|133013 cd02522, GT_2_like_a, GT_2_like_a represents a glycosyltransferase
           family-2 subfamily with unknown function.
           Glycosyltransferase family 2 (GT-2) subfamily of unknown
           function. GT-2 includes diverse families of
           glycosyltransferases with a common GT-A type structural
           fold, which has two tightly associated beta/alpha/beta
           domains that tend to form a continuous central sheet of
           at least eight beta-strands. These are enzymes that
           catalyze the transfer of sugar moieties from activated
           donor molecules to specific acceptor molecules, forming
           glycosidic bonds. Glycosyltransferases have been
           classified into more than 90 distinct sequence based
           families.
          Length = 221

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 44/217 (20%), Positives = 72/217 (33%), Gaps = 52/217 (23%)

Query: 326 VSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRV 385
           +SIIIPT N    L   L S+         E+I++D  S D          +     + V
Sbjct: 1   LSIIIPTLNEAENLPRLLASLRRLNPL-PLEIIVVDGGSTDGTV----AIARSA--GVVV 53

Query: 386 ITDNTHPFNYSR---INNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVG 442
           I+         R   +N  A   A+G +  FL+ DT +    W + ++         A  
Sbjct: 54  ISSPK-----GRARQMNAGAA-AARGDWLLFLHADTRLPPD-WDAAIIETLRADGAVAGA 106

Query: 443 ARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSVPNYQAFAMHFTHSISAV 502
            RL +       R        + +G N            R                    
Sbjct: 107 FRLRFDDPGPRLR-------LLELGAN-----------LRS----------RLFGLP--- 135

Query: 503 TG-ACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRI 538
            G   + + ++ F  +GGF E   P +  D++L  R+
Sbjct: 136 YGDQGLFIRRELFEELGGFPE--LP-LMEDVELVRRL 169


>gnl|CDD|133061 cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose
           synthase (CESA) superfamily.  This is a subfamily of
           cellulose synthase (CESA) superfamily.  CESA superfamily
           includes a wide variety of glycosyltransferase family 2
           enzymes that share the common characteristic of
           catalyzing the elongation of polysaccharide chains.  The
           members of the superfamily include cellulose synthase
           catalytic subunit, chitin synthase, glucan biosynthesis
           protein and other families of CESA-like proteins.
          Length = 251

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 6/104 (5%)

Query: 66  KPLISVIMPVYKIKKEWLEMAIESVRSQIYSH--WELCIAEDCSGDIETVSLLKKYANMD 123
            P +++I+P Y  ++  +E  +E++ +  Y     E+ +  D S D  T  + ++YA  D
Sbjct: 28  LPTVTIIIPAYN-EEAVIEAKLENLLALDYPRDRLEIIVVSDGSTD-GTAEIAREYA--D 83

Query: 124 SRIKVVFRAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTAL 167
             +K++   +    +AA N A  LAT E +   D + LL P AL
Sbjct: 84  KGVKLLRFPERRGKAAALNRALALATGEIVVFTDANALLDPDAL 127



 Score = 28.7 bits (65), Expect = 5.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 320 PNPPPLVSIIIPTYN 334
           P   P V+IIIP YN
Sbjct: 25  PAYLPTVTIIIPAYN 39


>gnl|CDD|133028 cd04185, GT_2_like_b, Subfamily of Glycosyltransferase Family GT2
           of unknown function.  GT-2 includes diverse families of
           glycosyltransferases with a common GT-A type structural
           fold, which has two tightly associated beta/alpha/beta
           domains that tend to form a continuous central sheet of
           at least eight beta-strands. These are enzymes that
           catalyze the transfer of sugar moieties from activated
           donor molecules to specific acceptor molecules, forming
           glycosidic bonds. Glycosyltransferases have been
           classified into more than 90 distinct sequence based
           families.
          Length = 202

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 329 IIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLS-DDSKTFLYLQKIQKK 379
           ++ TYN   LLK CL+++    T     +I+IDN S D +  +L        
Sbjct: 2   VVVTYNRLDLLKECLDAL-LAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDN 52


>gnl|CDD|133056 cd06434, GT2_HAS, Hyaluronan synthases catalyze polymerization of
           hyaluronan.  Hyaluronan synthases (HASs) are
           bi-functional glycosyltransferases that catalyze
           polymerization of hyaluronan. HASs transfer both GlcUA
           and GlcNAc in beta-(1,3) and beta-(1,4) linkages,
           respectively to the hyaluronan chain using UDP-GlcNAc
           and UDP-GlcUA as substrates. HA is made as a free
           glycan, not attached to a protein or lipid. HASs do not
           need a primer for HA synthesis; they initiate HA
           biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA,
           and Mg2+. Hyaluronan (HA) is a linear
           heteropolysaccharide composed of (1-3)-linked
           beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can
           be found in vertebrates and a few microbes and is
           typically on the cell surface or in the extracellular
           space, but is also found inside mammalian cells.
           Hyaluronan has several physiochemical and biological
           functions such as space filling, lubrication, and
           providing a hydrated matrix through which cells can
           migrate.
          Length = 235

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 35/131 (26%), Positives = 50/131 (38%), Gaps = 11/131 (8%)

Query: 326 VSIIIPTYNHH-HLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLR 384
           V++IIP Y+    + + CL SI  +       V+   +        L +     KY  + 
Sbjct: 2   VTVIIPVYDEDPDVFRECLRSIL-RQKPLEIIVVTDGDDEPY----LSILSQTVKYGGIF 56

Query: 385 VITDNTHPFNYSRINNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGA- 443
           VIT   HP    R       H        L++DT V     L EM+     P+VG VG  
Sbjct: 57  VITV-PHP-GKRRALAEGIRHVTTDIVVLLDSDT-VWPPNALPEMLKPFEDPKVGGVGTN 113

Query: 444 -RLWYRRKKLW 453
            R+   R   W
Sbjct: 114 QRILRPRDSKW 124



 Score = 28.0 bits (63), Expect = 9.1
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 69 ISVIMPVYKIKKEWLEMAIESVRSQ 93
          ++VI+PVY    +     + S+  Q
Sbjct: 2  VTVIIPVYDEDPDVFRECLRSILRQ 26


>gnl|CDD|133031 cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked
           glycosylation.  UDP-glucose:dolichyl-phosphate
           glucosyltransferase (DPG_synthase) is a
           transmembrane-bound enzyme of the endoplasmic reticulum
           involved in protein N-linked glycosylation. This enzyme
           catalyzes the transfer of glucose from UDP-glucose to
           dolichyl phosphate.
          Length = 211

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 20/101 (19%)

Query: 328 IIIPTYNHHHLLKICLESIY---HKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNL- 383
           ++IP YN    L   LE       +    S+E+I++D+ S D  T    +K+ +K P L 
Sbjct: 1   VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKD-GTAEVARKLARKNPALI 59

Query: 384 RVITDNTHPFNYSRIN-------NNATLHAKGQYFCFLNND 417
           RV+T         + N           L A+G Y  F + D
Sbjct: 60  RVLT-------LPK-NRGKGGAVRAGMLAARGDYILFADAD 92



 Score = 29.1 bits (66), Expect = 3.6
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 71  VIMPVYKIKK---EWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYAN-MDSRI 126
           V++P Y  +K     LE A+E +  +    +E+ + +D S D  T  + +K A    + I
Sbjct: 1   VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKD-GTAEVARKLARKNPALI 59

Query: 127 KVVFRAKNGHISAASNSAAQLATSEWLALLDHD 159
           +V+   KN     A  +    A  +++   D D
Sbjct: 60  RVLTLPKNRGKGGAVRAGMLAARGDYILFADAD 92


>gnl|CDD|133012 cd02520, Glucosylceramide_synthase, Glucosylceramide synthase
           catalyzes the first glycosylation step of
           glycosphingolipid synthesis.
           UDP-glucose:N-acylsphingosine D-glucosyltransferase
           (glucosylceramide synthase or ceramide
           glucosyltransferase) catalyzes the first glycosylation
           step of glycosphingolipid synthesis. Its product,
           glucosylceramide, serves as the core of more than 300
           glycosphingolipids (GSL). GSLs are a group of membrane
           components that have the lipid portion embedded in the
           outer plasma membrane leaflet and the sugar chains
           extended to the outer environment. Several lines of
           evidence suggest the importance of GSLs in various
           cellular processes such as differentiation, adhesion,
           proliferation, and cell-cell recognition. In pathogenic
           fungus Cryptococcus neoformans,  glucosylceramide serves
           as an antigen that elicits an antibody response in
           patients and it is essential for fungal growth in host
           extracellular environment.
          Length = 196

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 29/147 (19%)

Query: 324 PLVSIIIP-------TYNHHHLLKICLESIYHKTTYSSFEVII-IDNLSDDSKTFLYLQK 375
           P VSI+ P        Y         LES + +  Y  +E++  + +  D +     ++K
Sbjct: 1   PGVSILKPLCGVDPNLYE-------NLESFFQQD-YPKYEILFCVQDEDDPA--IPVVRK 50

Query: 376 IQKKYPNL--RVITDNTHPFNYSRINN--NATLHAKGQYFCFLNNDTEVINGQWLSEMMG 431
           +  KYPN+  R++          ++NN       A+       ++D  V    +L  M+ 
Sbjct: 51  LIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEEARYDILVISDSDISVPPD-YLRRMVA 109

Query: 432 IASQPQVGAV------GARLWYRRKKL 452
               P VG V      G  +  RR+ L
Sbjct: 110 PLMDPGVGLVTCLCAFGKSMALRREVL 136


>gnl|CDD|133062 cd06442, DPM1_like, DPM1_like represents putative enzymes similar
           to eukaryotic DPM1.  Proteins similar to eukaryotic
           DPM1, including enzymes from bacteria and archaea; DPM1
           is the catalytic subunit of eukaryotic
           dolichol-phosphate mannose (DPM) synthase. DPM synthase
           is required for synthesis of the
           glycosylphosphatidylinositol (GPI) anchor, N-glycan
           precursor, protein O-mannose, and C-mannose. In higher
           eukaryotes,the enzyme has three subunits, DPM1, DPM2 and
           DPM3. DPM is synthesized from dolichol phosphate and
           GDP-Man on the cytosolic surface of the ER membrane by
           DPM synthase and then is flipped onto the luminal side
           and used as a donor substrate. In lower eukaryotes, such
           as Saccharomyces cerevisiae and Trypanosoma brucei, DPM
           synthase consists of a single component (Dpm1p and
           TbDpm1, respectively) that possesses one predicted
           transmembrane region near the C terminus for anchoring
           to the ER membrane. In contrast, the Dpm1 homologues of
           higher eukaryotes, namely fission yeast, fungi, and
           animals, have no transmembrane region, suggesting the
           existence of adapter molecules for membrane anchoring.
           This family also includes bacteria and archaea DPM1_like
           enzymes. However, the enzyme structure and mechanism of
           function are not well understood. This protein family
           belongs to Glycosyltransferase 2 superfamily.
          Length = 224

 Score = 39.8 bits (94), Expect = 0.002
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 328 IIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSK--TFLYLQKIQKKYPNLRV 385
           IIIPTYN    +   +E +        +E+I++D   D+S   T   ++++ K+YP +R+
Sbjct: 1   IIIPTYNERENIPELIERLDAALKGIDYEIIVVD---DNSPDGTAEIVRELAKEYPRVRL 57

Query: 386 I 386
           I
Sbjct: 58  I 58



 Score = 38.7 bits (91), Expect = 0.005
 Identities = 21/95 (22%), Positives = 48/95 (50%), Gaps = 4/95 (4%)

Query: 71  VIMPVYKIKKEWLEMAIESVRSQIYS-HWELCIAEDCSGDIETVSLLKKYANMDSRIKVV 129
           +I+P Y  ++E +   IE + + +    +E+ + +D S D  T  ++++ A    R++++
Sbjct: 1   IIIPTYN-ERENIPELIERLDAALKGIDYEIIVVDDNSPD-GTAEIVRELAKEYPRVRLI 58

Query: 130 FRAKNGHISAASNSAAQLATSEWLALLDHDDLLHP 164
            R     + +A     + A  + + ++D  DL HP
Sbjct: 59  VRPGKRGLGSAYIEGFKAARGDVIVVMDA-DLSHP 92


>gnl|CDD|38189 KOG2978, KOG2978, KOG2978, Dolichol-phosphate mannosyltransferase
           [General function prediction only].
          Length = 238

 Score = 38.4 bits (89), Expect = 0.006
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 6/95 (6%)

Query: 327 SIIIPTYNHHHLLKICLESI--YHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKY--PN 382
           S+I+PTYN    L I    I  Y       +E+II+D+ S D  T    + +QK Y   N
Sbjct: 6   SVILPTYNEKENLPIITRLIAKYMSEEGKKYEIIIVDDASPDG-TQEVAKALQKIYGEDN 64

Query: 383 LRVITDNTHPFNYSRINNNATLHAKGQYFCFLNND 417
           + +    T          +   HA G +   ++ D
Sbjct: 65  ILLKP-RTKKLGLGTAYIHGLKHATGDFIVIMDAD 98


>gnl|CDD|38188 KOG2977, KOG2977, KOG2977, Glycosyltransferase [General function
           prediction only].
          Length = 323

 Score = 35.7 bits (82), Expect = 0.043
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 17/104 (16%)

Query: 326 VSIIIPTYNHHHLLKIC-------LESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQK 378
           +S+I+P YN    +          LE  Y      ++E+I++D+ S DS   + L+  +K
Sbjct: 69  LSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFSRK 128

Query: 379 -KYPNLRVITDNTHPFNYSRINNNAT----LHAKGQYFCFLNND 417
               N+RVI         +R    A     L ++GQ   F + D
Sbjct: 129 LGDDNIRVI-----KLKKNRGKGGAVRKGMLSSRGQKILFADAD 167


>gnl|CDD|38940 KOG3736, KOG3736, KOG3736, Polypeptide
           N-acetylgalactosaminyltransferase [Posttranslational
           modification, protein turnover, chaperones].
          Length = 578

 Score = 31.9 bits (72), Expect = 0.49
 Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 10/109 (9%)

Query: 324 PLVSIIIPTYNHHHLLKICLESIYHKTTYSS----FEVIIIDNLSDDSKTFLYLQKIQKK 379
           P  S+II  +N        L +++     +      E+I++D+ SD       L++  K+
Sbjct: 142 PTTSVIIIFHNEA--WSTLLRTVHSVINRTPPYLLKEIILVDDFSDRDHLKDKLEEYVKR 199

Query: 380 YPNLRVI-TDNTHPFNYSRINNNATLHAKGQYFCFLNNDTEVINGQWLS 427
           +  +R++ T        +R+   +   A G+   FL++  EV  G WL 
Sbjct: 200 FSKVRILRTKKREGLIRARLLGAS--MATGEVLTFLDSHCEVNVG-WLE 245


>gnl|CDD|133005 cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4
           glucosyltransferase is required for biosynthesis of
           lipooligosaccharide.  UDP-glucose: lipooligosaccharide
           (LOS)  beta-1-4-glucosyltransferase catalyzes the
           addition of the first residue, glucose, of the
           lacto-N-neotetrase structure to HepI of the LOS inner
           core.  LOS is the major constituent of the outer leaflet
           of the outer membrane of gram-positive bacteria. It
           consists of a short oligosaccharide chain of variable
           composition (alpha chain) attached to a branched inner
           core which is lined in turn to lipid A. Beta 1,4
           glucosyltransferase is required to attach the alpha
           chain to the inner core.
          Length = 229

 Score = 31.5 bits (72), Expect = 0.70
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 29/103 (28%)

Query: 69  ISVIMPVY----KIKKEWLEMAIESVRSQIYSHWELCIAE-----DCSGDIETVSLLKKY 119
           +SV++        I++      +ESV+          + E       S D  TV + K+Y
Sbjct: 2   LSVVIITKNEERNIER-----CLESVK--------WAVDEIIVVDSGSTD-RTVEIAKEY 47

Query: 120 ANMDSRIKVVFRAKNGHISAASNSAAQLATSEWLALLDHDDLL 162
                  KV  R  +G   A  N A +LAT++W+  LD D+ L
Sbjct: 48  -----GAKVYQRWWDGF-GAQRNFALELATNDWVLSLDADERL 84



 Score = 30.7 bits (70), Expect = 1.2
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 4/41 (9%)

Query: 326 VSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDD 366
           +S++I T N    ++ CLES+         E+I++D+ S D
Sbjct: 2   LSVVIITKNEERNIERCLESVKWAVD----EIIVVDSGSTD 38


>gnl|CDD|132897 cd07057, BMC_CcmK, Carbon dioxide concentrating mechanism (CcmK);
           Bacterial Micro-Compartment (BCM) domain.  CcmK1-4 and
           CcmL proteins found in Synechocystis sp. strain PCC 6803
           make up the beta carboxysome shell.  These CcmK proteins
           have been shown to form hexameric units, while the CcmL
           proteins have been shown to form pentameric units.
           Together these proteins further assemble into the flat
           facets of the polyhedral carboxysome shell.  The
           structures suggest that the central pores and the gaps
           between hexamers limit the transport of metabolites into
           and out of the the carboxysome.
          Length = 88

 Score = 31.1 bits (71), Expect = 0.84
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 301 GIAAKAVFDGAQYRTHYMIPNPPPLVSIIIP 331
           GI A     G +  +H +IP P   +  ++P
Sbjct: 57  GIEAAERVHGGEVLSHTIIPRPHENLEAVLP 87


>gnl|CDD|133017 cd02526, GT2_RfbF_like, RfbF is a putative dTDP-rhamnosyl
           transferase.  Shigella flexneri RfbF protein is a
           putative dTDP-rhamnosyl transferase. dTDP rhamnosyl
           transferases of Shigella flexneri  add rhamnose sugars
           to N-acetyl-glucosamine in the O-antigen tetrasaccharide
           repeat. Lipopolysaccharide O antigens are important
           virulence determinants for many bacteria. The variations
           of sugar composition, the sequence of the sugars and the
           linkages in the O antigen provide structural diversity
           of the O antigen.
          Length = 237

 Score = 30.7 bits (70), Expect = 1.3
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 13/114 (11%)

Query: 137 ISAASNSAAQLATS---EWLALLDHDDLLHPTA---LYYVADAINNNPNAEII---YSDE 187
           I+ A N   + A     +++ L D D +  P     L       + N N   +     D 
Sbjct: 60  IAKALNIGIKAALENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDR 119

Query: 188 DKINENQIRSGPYFKYDFNPELFH----VHNMITHLGVYRTETFKKIGGFREKF 237
                +       +K     E       V  +IT   +   E  +K+GGF E  
Sbjct: 120 RTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLITSGSLISLEALEKVGGFDEDL 173



 Score = 30.7 bits (70), Expect = 1.4
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 7/52 (13%)

Query: 507 MVMSKKCFMHVGGFDEKNTPVVF---SDIDLCLRILEAGYRNVWTPHADLYH 555
            ++S +    VGGFDE     +F    D + CLR    GY+    P A L H
Sbjct: 156 SLISLEALEKVGGFDED----LFIDYVDTEWCLRARSKGYKIYVVPDAVLKH 203


>gnl|CDD|38403 KOG3193, KOG3193, KOG3193, K+ channel subunit [Inorganic ion
           transport and metabolism].
          Length = 1087

 Score = 30.5 bits (68), Expect = 1.5
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 342 CLESIYHKTTYSSFEVIIIDNLSD-------DSKTFLYLQKIQKKYPNLRVITDNTHPFN 394
            L+ +      S+  V+++   +        D  T + +QKI + +P LR+IT+ TH  N
Sbjct: 773 NLDCLLRAGVSSAEHVVVVKETAVMAEEHTADCNTIITVQKIHRMFPRLRMITELTHATN 832

Query: 395 YSRINNNA 402
              +  N 
Sbjct: 833 MRFVQFNP 840


>gnl|CDD|38942 KOG3738, KOG3738, KOG3738, Predicted polypeptide
           N-acetylgalactosaminyltransferase [Posttranslational
           modification, protein turnover, chaperones].
          Length = 559

 Score = 30.0 bits (67), Expect = 1.8
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 8/109 (7%)

Query: 324 PLVSIIIPTYNHHH--LLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYP 381
           P  S+II  +N     LL+  +  +     +   E+I++D+ S D +    L++I  K  
Sbjct: 124 PPTSVIITFHNEARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQDPEDGKLLKRIP-KVR 182

Query: 382 NLRVITDNTHPFNYSRINNNATLHAKGQYFCFLNNDTEVINGQWLSEMM 430
            LR   +       SR+       A+     FL++  EV N  WL  ++
Sbjct: 183 VLR--NNEREGLIRSRVRGADV--AQATVLTFLDSHCEV-NEGWLEPLL 226


>gnl|CDD|37758 KOG2547, KOG2547, KOG2547, Ceramide glucosyltransferase [Lipid
           transport and metabolism, Cell wall/membrane/envelope
           biogenesis].
          Length = 431

 Score = 30.3 bits (68), Expect = 1.8
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 9/119 (7%)

Query: 55  KILQNISQWQNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGD--IET 112
           ++ +        P +S+I P+ K     L   +ES  +  Y  +EL    + S D  IE 
Sbjct: 73  RLHKKSKPDPKLPGVSIIKPL-KGVDPNLYHNLESFFTSQYHKYELLFCVESSEDPAIEV 131

Query: 113 VS-LLKKYANMDSRIKVVFRAKNGHISAASNS---AAQLATSEWLALLDHDDLLHPTAL 167
           V  LLKKY N+D+  K+ F  +   ++   N+     + A  + + + D    + P  +
Sbjct: 132 VERLLKKYPNVDA--KLFFGGEKVGLNPKINNMMPGYRAAKYDLVLISDSGIFMKPDTI 188


>gnl|CDD|146567 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1
           family). 
          Length = 619

 Score = 29.8 bits (67), Expect = 2.1
 Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 6/95 (6%)

Query: 11  SLLRKIKLKFPSRHKRRIIKFENFEKEYRE-WSSLFHDTSPQFTKKILQN---ISQWQNK 66
             L K+     ++ K+R  K ++  ++ +E W+ L    S +  K+ ++    +SQ   K
Sbjct: 210 DKLDKMLENLAAQKKQRADKIDDLREQIQELWNRL--QISDEEQKRFVREATILSQESIK 267

Query: 67  PLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELC 101
            L   +  +  +KK+ L+  IE +R +I   W+L 
Sbjct: 268 RLEEEVERLEALKKQNLKKFIEDLRIEIQELWDLL 302


>gnl|CDD|38795 KOG3588, KOG3588, KOG3588, Chondroitin synthase 1 [Carbohydrate
           transport and metabolism].
          Length = 494

 Score = 29.2 bits (65), Expect = 3.2
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 509 MSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYH 555
             +  F+ VGGFD +       D+DL  + + +G + + TP   L+H
Sbjct: 390 QYRSDFLTVGGFDMEIKGWGGEDVDLYRKYVHSGLKVIRTPEPGLFH 436


>gnl|CDD|37255 KOG2044, KOG2044, KOG2044, 5'-3' exonuclease HKE1/RAT1
           [Replication, recombination and repair, RNA processing
           and modification].
          Length = 931

 Score = 28.8 bits (64), Expect = 4.2
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)

Query: 160 DLLHPTALYYVADAINNNP---NAEIIYSD 186
           D L     YY+ D +N++P   N ++I SD
Sbjct: 168 DRLAKALRYYIHDRLNSDPGWKNIKVILSD 197


>gnl|CDD|133057 cd06435, CESA_NdvC_like, NdvC_like  proteins in this family are
           putative bacterial beta-(1,6)-glucosyltransferase.
           NdvC_like  proteins in this family are putative
           bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium
           japonicum synthesizes periplasmic cyclic
           beta-(1,3),beta-(1,6)-D-glucans during growth under
           hypoosmotic conditions. Two genes (ndvB, ndvC) are
           involved in the beta-(1, 3), beta-(1,6)-glucan
           synthesis. The ndvC mutant strain resulted in synthesis
           of altered cyclic beta-glucans composed almost entirely
           of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic
           beta-(1,3),beta-(1,6)-D-glucans function for
           osmoregulation. The ndvC mutation also affects the
           ability of the bacteria to establish a successful
           symbiotic interaction with host plant. Thus, the
           beta-glucans may function as suppressors of a host
           defense response.
          Length = 236

 Score = 28.5 bits (64), Expect = 5.4
 Identities = 56/239 (23%), Positives = 87/239 (36%), Gaps = 53/239 (22%)

Query: 327 SIIIPTYNHH-HLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQK--KYPNL 383
           SI +P Y     ++K  L+S+     Y +FEVI+IDN + D   +   + ++        
Sbjct: 1   SIHVPCYEEPPEMVKETLDSL-AALDYPNFEVIVIDNNTKDEALW---KPVEAHCAQLGE 56

Query: 384 RVITDNTHPFNYSRINNNATLHAKGQYFC--FLNNDTEVI---------NGQWLSEMMGI 432
           R        F +  +       A    +       D E+I            WL  ++ I
Sbjct: 57  R--------FRFFHVEPLPGAKAGALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPI 108

Query: 433 ASQPQVGAVGARLWYRRKKLWKRS--KRLQHGGVIMGINNIAGHKNKHHKARCSVPNYQA 490
              P+VG V A   YR     + S  KR+ +          A +K        S     A
Sbjct: 109 FDDPRVGFVQAPQDYRD---GEESLFKRMCY----------AEYKGFFDIGMVSRNERNA 155

Query: 491 FAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTP 549
              H T         C++  +     VGG+DE     +  D +L LR+ EAGY  V+  
Sbjct: 156 IIQHGT--------MCLI-RRSALDDVGGWDEW---CITEDSELGLRMHEAGYIGVYVA 202


>gnl|CDD|37204 KOG1993, KOG1993, KOG1993, Nuclear transport receptor KAP120
           (importin beta superfamily) [Nuclear structure,
           Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 978

 Score = 28.4 bits (63), Expect = 6.9
 Identities = 10/47 (21%), Positives = 13/47 (27%)

Query: 512 KCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHDES 558
              M V  F     P  FS    C   LE     ++  +  L     
Sbjct: 267 IKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQISG 313


>gnl|CDD|32766 COG2943, MdoH, Membrane glycosyltransferase [Cell envelope
           biogenesis, outer membrane].
          Length = 736

 Score = 28.0 bits (62), Expect = 8.7
 Identities = 8/35 (22%), Positives = 18/35 (51%)

Query: 151 EWLALLDHDDLLHPTALYYVADAINNNPNAEIIYS 185
            ++ +LD D ++    L  +   +  NP+A +I +
Sbjct: 242 SYMLVLDADSVMTGDCLVRLVRLMEANPDAGLIQT 276


>gnl|CDD|36140 KOG0922, KOG0922, KOG0922, DEAH-box RNA helicase [RNA processing
           and modification].
          Length = 674

 Score = 27.9 bits (62), Expect = 8.9
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 4/38 (10%)

Query: 353 SSFEVIIIDNLSDDSKT----FLYLQKIQKKYPNLRVI 386
           S + VII+D   + S         L+KI KK P+L++I
Sbjct: 162 SKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLI 199


>gnl|CDD|133049 cd06427, CESA_like_2, CESA_like_2 is a member of the cellulose
           synthase superfamily.  The cellulose synthase (CESA)
           superfamily includes a wide variety of
           glycosyltransferase family 2 enzymes that share the
           common characteristic of catalyzing the elongation of
           polysaccharide chains.  The members include cellulose
           synthase catalytic subunit, chitin synthase, Glucan
           Biosynthesis protein and other families of CESA-like
           proteins. Cellulose synthase catalyzes the
           polymerization reaction of cellulose, an aggregate of
           unbranched polymers of beta-1,4-linked glucose residues
           in  plants, most algae, some bacteria and fungi, and
           even some animals. In bacteria, algae and lower
           eukaryotes, there is a second unrelated type of
           cellulose synthase (Type II), which produces acylated
           cellulose, a derivative of cellulose.  Chitin synthase
           catalyzes the incorporation of GlcNAc from substrate
           UDP-GlcNAc into chitin, which is a linear homopolymer of
           beta-(1,4)-linked GlcNAc residues and Glucan
           Biosynthesis protein catalyzes the elongation of
           beta-1,2 polyglucose chains of glucan.
          Length = 241

 Score = 27.6 bits (62), Expect = 9.5
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 3/41 (7%)

Query: 504 GACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYR 544
           G            +GG+D  N   V  D DL LR+  AGYR
Sbjct: 163 GTSNHFRTDVLRELGGWDPFN---VTEDADLGLRLARAGYR 200


>gnl|CDD|35375 KOG0153, KOG0153, KOG0153, Predicted RNA-binding protein (RRM
           superfamily) [General function prediction only].
          Length = 377

 Score = 27.7 bits (61), Expect = 9.8
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 520 FDEKNTPVV--FSDIDLCLRILEAGYRNVWTPHADLYHDESRTRKYDHEDPAKMIVFQEA 577
           + ++N P +  F     C R  E  YR+   P   L     + R Y   DP  + +   A
Sbjct: 155 YYKRNRPHICSFFVKGECKRGAECPYRHEKPPDDPLSLQNIKDRYYGLNDPVALKILNRA 214

Query: 578 C 578
            
Sbjct: 215 G 215


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.321    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 8,036,511
Number of extensions: 438335
Number of successful extensions: 1242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1191
Number of HSP's successfully gapped: 74
Length of query: 623
Length of database: 6,263,737
Length adjustment: 100
Effective length of query: 523
Effective length of database: 4,102,837
Effective search space: 2145783751
Effective search space used: 2145783751
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.0 bits)