RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780918|ref|YP_003065331.1| glycosyl transferase family
protein [Candidatus Liberibacter asiaticus str. psy62]
         (623 letters)



>gnl|CDD|182197 PRK10018, PRK10018, putative glycosyl transferase; Provisional.
          Length = 279

 Score = 71.9 bits (176), Expect = 5e-13
 Identities = 64/226 (28%), Positives = 101/226 (44%), Gaps = 20/226 (8%)

Query: 65  NKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDS 124
           + PLIS+ MP +  +++    AI+SV  Q YS+WE+ I +DCS   E +       N D 
Sbjct: 3   DNPLISIYMPTWN-RQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALN-DP 60

Query: 125 RIKVVFRAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIY 184
           RI  +    N    A  N A  LA  E++  +D DD   P  L               +Y
Sbjct: 61  RITYIHNDINSGACAVRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHKQQLVTHAFLY 120

Query: 185 SDEDKINENQIRSGP-----YFKYDFNPELFHVHNMITHLGVYRTETFKKIGGFREKFEG 239
           ++ D + + ++ S P     Y K  ++  LF+  N+I +        FK+   F  + + 
Sbjct: 121 AN-DYVCQGEVYSQPASLPLYPKSPYSRRLFYKRNIIGNQVFTWAWRFKEC-LFDTELKA 178

Query: 240 AQDYDLVLRFLENI-------DLSQIIHIPRVLYHWRMHDNSTAQK 278
           AQDYD+ LR +          + +QI+HI     H  M   S+ +K
Sbjct: 179 AQDYDIFLRMVVEYGEPWKVEEATQILHIN----HGEMQITSSPKK 220



 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 5/97 (5%)

Query: 324 PLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNL 383
           PL+SI +PT+N   L    ++S+  +  YS++E+II+D   D S ++  LQ+      + 
Sbjct: 5   PLISIYMPTWNRQQLAIRAIKSVL-RQDYSNWEMIIVD---DCSTSWEQLQQYVTALNDP 60

Query: 384 RV-ITDNTHPFNYSRINNNATLHAKGQYFCFLNNDTE 419
           R+    N        + N A + A+G+Y   +++D E
Sbjct: 61  RITYIHNDINSGACAVRNQAIMLAQGEYITGIDDDDE 97


>gnl|CDD|183038 PRK11204, PRK11204, N-glycosyltransferase; Provisional.
          Length = 420

 Score = 65.0 bits (159), Expect = 5e-11
 Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 2/112 (1%)

Query: 67  PLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRI 126
           P +S+++P Y  + E +E  I  + +  Y ++E+    D S D  T  +L + A    R+
Sbjct: 54  PGVSILVPCYN-EGENVEETISHLLALRYPNYEVIAINDGSSD-NTGEILDRLAAQIPRL 111

Query: 127 KVVFRAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNP 178
           +V+  A+N   + A N+ A  A SE+L  +D D LL P A  Y+ +   +NP
Sbjct: 112 RVIHLAENQGKANALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNP 163



 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 25/129 (19%)

Query: 324 PLVSIIIPTYNH--------HHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQK 375
           P VSI++P YN          HLL +          Y ++EVI I++ S D  T   L +
Sbjct: 54  PGVSILVPCYNEGENVEETISHLLAL---------RYPNYEVIAINDGSSD-NTGEILDR 103

Query: 376 IQKKYPNLRVITDNTHPFNYSRIN--NNATLHAKGQYFCFLNNDTEVINGQWLSEMMG-I 432
           +  + P LRVI       N  + N  N     A+ +Y   ++ D  +++    + M+   
Sbjct: 104 LAAQIPRLRVI---HLAENQGKANALNTGAAAARSEYLVCIDGDA-LLDPDAAAYMVEHF 159

Query: 433 ASQPQVGAV 441
              P+VGAV
Sbjct: 160 LHNPRVGAV 168


>gnl|CDD|182223 PRK10073, PRK10073, putative glycosyl transferase; Provisional.
          Length = 328

 Score = 64.3 bits (157), Expect = 9e-11
 Identities = 63/243 (25%), Positives = 113/243 (46%), Gaps = 36/243 (14%)

Query: 64  QNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMD 123
            + P +S+I+P+Y   K      +ES+ +Q ++  E+ I  D S D  +V + K YA   
Sbjct: 3   NSTPKLSIIIPLYNAGK-DFRAFMESLIAQTWTALEIIIVNDGSTD-NSVEIAKHYAENY 60

Query: 124 SRIKVVFRAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALY--YVADAINNN---- 177
             ++++ +A N  +S A N+   +AT +++A  D DD+++PT +Y   +  A+ ++    
Sbjct: 61  PHVRLLHQA-NAGVSVARNTGLAVATGKYVAFPDADDVVYPT-MYETLMTMALEDDLDVA 118

Query: 178 -PNAEIIYSD---------EDKINENQIRSGP-YFKYDFNPELF-HVHNMITHLGVYRTE 225
             NA+  + D          D++    + SGP + +   +   + HV      LGVYR +
Sbjct: 119 QCNADWCFRDTGETWQSIPSDRLRSTGVLSGPDWLRMALSSRRWTHV----VWLGVYRRD 174

Query: 226 TFKKIGGFREKFEGA---QDYDLVLRFLENIDLSQIIHIPRVLYHWRMHDNSTA--QKIG 280
              K      KFE     QD       + N    +  +  + LY + +HD S +   + G
Sbjct: 175 FIVKNN---IKFEPGLHHQDIPWTTEVMFNALRVR--YTEQSLYKYYLHDTSVSRLPRQG 229

Query: 281 NKN 283
           NKN
Sbjct: 230 NKN 232



 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 10/149 (6%)

Query: 324 PLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNL 383
           P +SIIIP YN     +  +ES+    T+++ E+II+++ S D+   +  +   + YP++
Sbjct: 6   PKLSIIIPLYNAGKDFRAFMESL-IAQTWTALEIIIVNDGSTDNSVEI-AKHYAENYPHV 63

Query: 384 RVITDNTHPFNYSRINNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAV-- 441
           R++         S   N     A G+Y  F + D  V    +   +M +A +  +     
Sbjct: 64  RLLHQANA--GVSVARNTGLAVATGKYVAFPDADDVVYPTMY-ETLMTMALEDDLDVAQC 120

Query: 442 -GARLWYRRKKLWKR--SKRLQHGGVIMG 467
                +    + W+   S RL+  GV+ G
Sbjct: 121 NADWCFRDTGETWQSIPSDRLRSTGVLSG 149


>gnl|CDD|132155 TIGR03111, glyc2_xrt_Gpos1, putative glycosyltransferase TIGR03111.
            Members of this protein family probable
           glycosyltransferases of family 2, whose genes are near
           those for Gram-positive proteins (TIGR03110) related to
           the proposed exosortase (TIGR02602).
          Length = 439

 Score = 51.7 bits (124), Expect = 6e-07
 Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 324 PLVSIIIPTYNHHHLLKICLESIYHKTTYSSF-EVIIIDNLSDDSKTFLYLQKIQKKYPN 382
           P ++IIIP YN    L  C+ESIY++T      ++I+ +N S D    ++ +  Q ++P 
Sbjct: 49  PDITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCR-AQNEFPG 107

Query: 383 LRVITDNTHPFNYSRINNNATLHAKGQYFCFLNND 417
           L +   N+     ++  N A  ++ G+Y   +++D
Sbjct: 108 LSLRYMNSDQ-GKAKALNAAIYNSIGKYIIHIDSD 141



 Score = 33.9 bits (78), Expect = 0.13
 Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 25/198 (12%)

Query: 52  FTKKILQNISQWQNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSH--WELCIAEDCSGD 109
             KK L+ I +    P I++I+PVY   ++ L   IES+ +Q Y     ++ +A + S D
Sbjct: 37  RHKKRLKFIGKL---PDITIIIPVYN-SEDTLFNCIESIYNQTYPIELIDIILANNQSTD 92

Query: 110 IETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALYY 169
            ++  +  +  N    + + +   +   + A N+A   +  +++  +D D  LH  A+  
Sbjct: 93  -DSFQVFCRAQNEFPGLSLRYMNSDQGKAKALNAAIYNSIGKYIIHIDSDGKLHKDAIKN 151

Query: 170 VADAINNNPNAE----IIYSDEDKINENQ------IRSGPYFKY--------DFNPELFH 211
           +     NNP+      +I +D++ I + +      IR   YF+Y        +F  ++  
Sbjct: 152 MVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFLAGRNFESQVNS 211

Query: 212 VHNMITHLGVYRTETFKK 229
           +  +      +R ET  K
Sbjct: 212 LFTLSGAFSAFRRETILK 229


>gnl|CDD|184755 PRK14583, hmsR, N-glycosyltransferase; Provisional.
          Length = 444

 Score = 48.4 bits (115), Expect = 6e-06
 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 64  QNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMD 123
           +  PL+S+++P +       E  I +  +Q Y++ E+    D S D +T  +L      D
Sbjct: 72  KGHPLVSILVPCFNEGLNARE-TIHAALAQTYTNIEVIAINDGSSD-DTAQVLDALLAED 129

Query: 124 SRIKVVFRAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNP 178
            R++V+  A N   + A    A  A SE+L  +D D LL   A+ Y+   +  NP
Sbjct: 130 PRLRVIHLAHNQGKAIALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANP 184



 Score = 38.8 bits (90), Expect = 0.004
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 324 PLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNL 383
           PLVSI++P +N     +  + +   + TY++ EVI I++ S D  T   L  +  + P L
Sbjct: 75  PLVSILVPCFNEGLNARETIHAALAQ-TYTNIEVIAINDGSSDD-TAQVLDALLAEDPRL 132

Query: 384 RVI 386
           RVI
Sbjct: 133 RVI 135


>gnl|CDD|178327 PLN02726, PLN02726, dolichyl-phosphate beta-D-mannosyltransferase.
          Length = 243

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 321 NPPPLVSIIIPTYNHHHLLKICLESIY-HKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKK 379
                 SII+PTYN    + + +  I+        FE+I++D+ S D  T   ++++QK 
Sbjct: 6   EGAMKYSIIVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDG-TQDVVKQLQKV 64

Query: 380 YPNLRV 385
           Y   R+
Sbjct: 65  YGEDRI 70


>gnl|CDD|182218 PRK10063, PRK10063, putative glycosyl transferase; Provisional.
          Length = 248

 Score = 32.1 bits (73), Expect = 0.47
 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 324 PLVSIIIPTYNHHHLLKICLESIYH--KTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYP 381
            L+S+I   + +   +     S+ H  +    SFE I++D  S+D  T  +L+ +   + 
Sbjct: 1   MLLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDG-TREFLENLNGIF- 58

Query: 382 NLRVITDNTHPFNYSRINNNATLHAKGQYFCFLN 415
           NLR +++  +   Y  +N    + A+G++  FLN
Sbjct: 59  NLRFVSEPDNGI-YDAMNKGIAM-AQGRFALFLN 90


>gnl|CDD|148222 pfam06483, ChiC, Chitinase C.  This ~170 aa region is found at the
           C-terminus of pfam00704.
          Length = 179

 Score = 31.9 bits (73), Expect = 0.53
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 469 NNIAGHKNKHHKARCSVPNYQAFA 492
           NN+ G +   H+   ++P +++ A
Sbjct: 106 NNVGGLEGDFHRVAFTLPAWKSLA 129


>gnl|CDD|185532 PTZ00260, PTZ00260, dolichyl-phosphate beta-glucosyltransferase;
           Provisional.
          Length = 333

 Score = 30.9 bits (70), Expect = 1.1
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 7/48 (14%)

Query: 327 SIIIPTYNHH-HLLKICLESIYHKTTYS------SFEVIIIDNLSDDS 367
           SI+IP YN    L K+  E+I +  + S       +E+II+++ S D 
Sbjct: 73  SIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDK 120


>gnl|CDD|183832 PRK12935, PRK12935, acetoacetyl-CoA reductase; Provisional.
          Length = 247

 Score = 29.6 bits (66), Expect = 2.7
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 24/110 (21%)

Query: 215 MITHLGVYRTETFKKIGGFREKFEGAQDYDL---------VLRFLENIDLSQIIHIPRVL 265
           ++ + G+ R  TFKK+   RE +E   D +L         VL ++   +  +II I  ++
Sbjct: 88  LVNNAGITRDRTFKKLN--REDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSII 145

Query: 266 YHWRMHDNSTAQKIGNKNY-AGKAG----ERALNEHFQRTGIAAKAVFDG 310
                     A   G  NY A KAG     ++L     +T +   A+  G
Sbjct: 146 --------GQAGGFGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPG 187


>gnl|CDD|173172 PRK14709, PRK14709, hypothetical protein; Provisional.
          Length = 469

 Score = 28.9 bits (65), Expect = 4.1
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 10/64 (15%)

Query: 522 EKNTPVVFSDIDL--------CLRILEAGYRNVWTPHADLYHDESRTRKYDHEDPAKMIV 573
            + T   F++ D         C  I++ G    W    DLY       + + E       
Sbjct: 376 TEATEEYFAEQDTFGQWLEERC--IVDPGNPVCWDVLQDLYASWCEFARAEGEPAGTAKE 433

Query: 574 FQEA 577
           F E 
Sbjct: 434 FGER 437


>gnl|CDD|179850 PRK04443, PRK04443, acetyl-lysine deacetylase; Provisional.
          Length = 348

 Score = 28.4 bits (64), Expect = 6.1
 Identities = 8/33 (24%), Positives = 16/33 (48%)

Query: 126 IKVVFRAKNGHISAASNSAAQLATSEWLALLDH 158
           +  V  +++ H +    +AA+ A   WLA+   
Sbjct: 163 VTYVATSESFHSAGPEPNAAEDAIEWWLAVEAW 195


>gnl|CDD|182669 PRK10714, PRK10714, undecaprenyl phosphate
           4-deoxy-4-formamido-L-arabinose transferase;
           Provisional.
          Length = 325

 Score = 27.8 bits (62), Expect = 8.0
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 10/48 (20%)

Query: 326 VSIIIPTYNHHHLLKICLESIYHKTTYS------SFEVIIIDNLSDDS 367
           VS++IP YN    L   +     +TT +       +E+++ID+ S D+
Sbjct: 8   VSVVIPVYNEQESLPELIR----RTTAACESLGKEYEILLIDDGSSDN 51


>gnl|CDD|181233 PRK08116, PRK08116, hypothetical protein; Validated.
          Length = 268

 Score = 27.7 bits (62), Expect = 8.8
 Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 50/175 (28%)

Query: 4   SCKCVVKSLLRKIKLKFPSRHKRRI---IKFENFEKEYREW---SSLFHDTSPQFTKKIL 57
            C+C  ++   K + +     +RRI         ++++R     + LF   S +  K   
Sbjct: 42  MCECEREAEEAKEREEENREKQRRIERLKSNSLLDEKFRNSTFENFLFDKGSEKAYKI-- 99

Query: 58  QNISQWQNKPLISVIMPVYKIKKEWLEMAIESVRSQIY-------SHWELCIAEDCSGDI 110
                              K  K++ EM  E+V   ++       ++   CIA       
Sbjct: 100 -----------------ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIAN------ 136

Query: 111 ETVSLLKKYANMDSRIKVVFRAKNG---HISAASNSAAQLATSEWLALLDHDDLL 162
               L++K       + V+F         I +   S+ +   +E +  L + DLL
Sbjct: 137 ---ELIEKG------VPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLL 182


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.321    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 10,368,417
Number of extensions: 673427
Number of successful extensions: 1335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1320
Number of HSP's successfully gapped: 29
Length of query: 623
Length of database: 5,994,473
Length adjustment: 99
Effective length of query: 524
Effective length of database: 3,855,281
Effective search space: 2020167244
Effective search space used: 2020167244
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.0 bits)