RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780918|ref|YP_003065331.1| glycosyl transferase family protein [Candidatus Liberibacter asiaticus str. psy62] (623 letters) >gnl|CDD|182197 PRK10018, PRK10018, putative glycosyl transferase; Provisional. Length = 279 Score = 71.9 bits (176), Expect = 5e-13 Identities = 64/226 (28%), Positives = 101/226 (44%), Gaps = 20/226 (8%) Query: 65 NKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDS 124 + PLIS+ MP + +++ AI+SV Q YS+WE+ I +DCS E + N D Sbjct: 3 DNPLISIYMPTWN-RQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALN-DP 60 Query: 125 RIKVVFRAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIY 184 RI + N A N A LA E++ +D DD P L +Y Sbjct: 61 RITYIHNDINSGACAVRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHKQQLVTHAFLY 120 Query: 185 SDEDKINENQIRSGP-----YFKYDFNPELFHVHNMITHLGVYRTETFKKIGGFREKFEG 239 ++ D + + ++ S P Y K ++ LF+ N+I + FK+ F + + Sbjct: 121 AN-DYVCQGEVYSQPASLPLYPKSPYSRRLFYKRNIIGNQVFTWAWRFKEC-LFDTELKA 178 Query: 240 AQDYDLVLRFLENI-------DLSQIIHIPRVLYHWRMHDNSTAQK 278 AQDYD+ LR + + +QI+HI H M S+ +K Sbjct: 179 AQDYDIFLRMVVEYGEPWKVEEATQILHIN----HGEMQITSSPKK 220 Score = 43.8 bits (103), Expect = 1e-04 Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 5/97 (5%) Query: 324 PLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNL 383 PL+SI +PT+N L ++S+ + YS++E+II+D D S ++ LQ+ + Sbjct: 5 PLISIYMPTWNRQQLAIRAIKSVL-RQDYSNWEMIIVD---DCSTSWEQLQQYVTALNDP 60 Query: 384 RV-ITDNTHPFNYSRINNNATLHAKGQYFCFLNNDTE 419 R+ N + N A + A+G+Y +++D E Sbjct: 61 RITYIHNDINSGACAVRNQAIMLAQGEYITGIDDDDE 97 >gnl|CDD|183038 PRK11204, PRK11204, N-glycosyltransferase; Provisional. Length = 420 Score = 65.0 bits (159), Expect = 5e-11 Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 2/112 (1%) Query: 67 PLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSRI 126 P +S+++P Y + E +E I + + Y ++E+ D S D T +L + A R+ Sbjct: 54 PGVSILVPCYN-EGENVEETISHLLALRYPNYEVIAINDGSSD-NTGEILDRLAAQIPRL 111 Query: 127 KVVFRAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNP 178 +V+ A+N + A N+ A A SE+L +D D LL P A Y+ + +NP Sbjct: 112 RVIHLAENQGKANALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNP 163 Score = 47.2 bits (113), Expect = 1e-05 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 25/129 (19%) Query: 324 PLVSIIIPTYNH--------HHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQK 375 P VSI++P YN HLL + Y ++EVI I++ S D T L + Sbjct: 54 PGVSILVPCYNEGENVEETISHLLAL---------RYPNYEVIAINDGSSD-NTGEILDR 103 Query: 376 IQKKYPNLRVITDNTHPFNYSRIN--NNATLHAKGQYFCFLNNDTEVINGQWLSEMMG-I 432 + + P LRVI N + N N A+ +Y ++ D +++ + M+ Sbjct: 104 LAAQIPRLRVI---HLAENQGKANALNTGAAAARSEYLVCIDGDA-LLDPDAAAYMVEHF 159 Query: 433 ASQPQVGAV 441 P+VGAV Sbjct: 160 LHNPRVGAV 168 >gnl|CDD|182223 PRK10073, PRK10073, putative glycosyl transferase; Provisional. Length = 328 Score = 64.3 bits (157), Expect = 9e-11 Identities = 63/243 (25%), Positives = 113/243 (46%), Gaps = 36/243 (14%) Query: 64 QNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMD 123 + P +S+I+P+Y K +ES+ +Q ++ E+ I D S D +V + K YA Sbjct: 3 NSTPKLSIIIPLYNAGK-DFRAFMESLIAQTWTALEIIIVNDGSTD-NSVEIAKHYAENY 60 Query: 124 SRIKVVFRAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALY--YVADAINNN---- 177 ++++ +A N +S A N+ +AT +++A D DD+++PT +Y + A+ ++ Sbjct: 61 PHVRLLHQA-NAGVSVARNTGLAVATGKYVAFPDADDVVYPT-MYETLMTMALEDDLDVA 118 Query: 178 -PNAEIIYSD---------EDKINENQIRSGP-YFKYDFNPELF-HVHNMITHLGVYRTE 225 NA+ + D D++ + SGP + + + + HV LGVYR + Sbjct: 119 QCNADWCFRDTGETWQSIPSDRLRSTGVLSGPDWLRMALSSRRWTHV----VWLGVYRRD 174 Query: 226 TFKKIGGFREKFEGA---QDYDLVLRFLENIDLSQIIHIPRVLYHWRMHDNSTA--QKIG 280 K KFE QD + N + + + LY + +HD S + + G Sbjct: 175 FIVKNN---IKFEPGLHHQDIPWTTEVMFNALRVR--YTEQSLYKYYLHDTSVSRLPRQG 229 Query: 281 NKN 283 NKN Sbjct: 230 NKN 232 Score = 53.9 bits (130), Expect = 1e-07 Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 10/149 (6%) Query: 324 PLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNL 383 P +SIIIP YN + +ES+ T+++ E+II+++ S D+ + + + YP++ Sbjct: 6 PKLSIIIPLYNAGKDFRAFMESL-IAQTWTALEIIIVNDGSTDNSVEI-AKHYAENYPHV 63 Query: 384 RVITDNTHPFNYSRINNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAV-- 441 R++ S N A G+Y F + D V + +M +A + + Sbjct: 64 RLLHQANA--GVSVARNTGLAVATGKYVAFPDADDVVYPTMY-ETLMTMALEDDLDVAQC 120 Query: 442 -GARLWYRRKKLWKR--SKRLQHGGVIMG 467 + + W+ S RL+ GV+ G Sbjct: 121 NADWCFRDTGETWQSIPSDRLRSTGVLSG 149 >gnl|CDD|132155 TIGR03111, glyc2_xrt_Gpos1, putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602). Length = 439 Score = 51.7 bits (124), Expect = 6e-07 Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 324 PLVSIIIPTYNHHHLLKICLESIYHKTTYSSF-EVIIIDNLSDDSKTFLYLQKIQKKYPN 382 P ++IIIP YN L C+ESIY++T ++I+ +N S D ++ + Q ++P Sbjct: 49 PDITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCR-AQNEFPG 107 Query: 383 LRVITDNTHPFNYSRINNNATLHAKGQYFCFLNND 417 L + N+ ++ N A ++ G+Y +++D Sbjct: 108 LSLRYMNSDQ-GKAKALNAAIYNSIGKYIIHIDSD 141 Score = 33.9 bits (78), Expect = 0.13 Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 25/198 (12%) Query: 52 FTKKILQNISQWQNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSH--WELCIAEDCSGD 109 KK L+ I + P I++I+PVY ++ L IES+ +Q Y ++ +A + S D Sbjct: 37 RHKKRLKFIGKL---PDITIIIPVYN-SEDTLFNCIESIYNQTYPIELIDIILANNQSTD 92 Query: 110 IETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALYY 169 ++ + + N + + + + + A N+A + +++ +D D LH A+ Sbjct: 93 -DSFQVFCRAQNEFPGLSLRYMNSDQGKAKALNAAIYNSIGKYIIHIDSDGKLHKDAIKN 151 Query: 170 VADAINNNPNAE----IIYSDEDKINENQ------IRSGPYFKY--------DFNPELFH 211 + NNP+ +I +D++ I + + IR YF+Y +F ++ Sbjct: 152 MVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFLAGRNFESQVNS 211 Query: 212 VHNMITHLGVYRTETFKK 229 + + +R ET K Sbjct: 212 LFTLSGAFSAFRRETILK 229 >gnl|CDD|184755 PRK14583, hmsR, N-glycosyltransferase; Provisional. Length = 444 Score = 48.4 bits (115), Expect = 6e-06 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 2/115 (1%) Query: 64 QNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMD 123 + PL+S+++P + E I + +Q Y++ E+ D S D +T +L D Sbjct: 72 KGHPLVSILVPCFNEGLNARE-TIHAALAQTYTNIEVIAINDGSSD-DTAQVLDALLAED 129 Query: 124 SRIKVVFRAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNP 178 R++V+ A N + A A A SE+L +D D LL A+ Y+ + NP Sbjct: 130 PRLRVIHLAHNQGKAIALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANP 184 Score = 38.8 bits (90), Expect = 0.004 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Query: 324 PLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNL 383 PLVSI++P +N + + + + TY++ EVI I++ S D T L + + P L Sbjct: 75 PLVSILVPCFNEGLNARETIHAALAQ-TYTNIEVIAINDGSSDD-TAQVLDALLAEDPRL 132 Query: 384 RVI 386 RVI Sbjct: 133 RVI 135 >gnl|CDD|178327 PLN02726, PLN02726, dolichyl-phosphate beta-D-mannosyltransferase. Length = 243 Score = 40.8 bits (96), Expect = 0.001 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 321 NPPPLVSIIIPTYNHHHLLKICLESIY-HKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKK 379 SII+PTYN + + + I+ FE+I++D+ S D T ++++QK Sbjct: 6 EGAMKYSIIVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDG-TQDVVKQLQKV 64 Query: 380 YPNLRV 385 Y R+ Sbjct: 65 YGEDRI 70 >gnl|CDD|182218 PRK10063, PRK10063, putative glycosyl transferase; Provisional. Length = 248 Score = 32.1 bits (73), Expect = 0.47 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Query: 324 PLVSIIIPTYNHHHLLKICLESIYH--KTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYP 381 L+S+I + + + S+ H + SFE I++D S+D T +L+ + + Sbjct: 1 MLLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDG-TREFLENLNGIF- 58 Query: 382 NLRVITDNTHPFNYSRINNNATLHAKGQYFCFLN 415 NLR +++ + Y +N + A+G++ FLN Sbjct: 59 NLRFVSEPDNGI-YDAMNKGIAM-AQGRFALFLN 90 >gnl|CDD|148222 pfam06483, ChiC, Chitinase C. This ~170 aa region is found at the C-terminus of pfam00704. Length = 179 Score = 31.9 bits (73), Expect = 0.53 Identities = 6/24 (25%), Positives = 14/24 (58%) Query: 469 NNIAGHKNKHHKARCSVPNYQAFA 492 NN+ G + H+ ++P +++ A Sbjct: 106 NNVGGLEGDFHRVAFTLPAWKSLA 129 >gnl|CDD|185532 PTZ00260, PTZ00260, dolichyl-phosphate beta-glucosyltransferase; Provisional. Length = 333 Score = 30.9 bits (70), Expect = 1.1 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 7/48 (14%) Query: 327 SIIIPTYNHH-HLLKICLESIYHKTTYS------SFEVIIIDNLSDDS 367 SI+IP YN L K+ E+I + + S +E+II+++ S D Sbjct: 73 SIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDK 120 >gnl|CDD|183832 PRK12935, PRK12935, acetoacetyl-CoA reductase; Provisional. Length = 247 Score = 29.6 bits (66), Expect = 2.7 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 24/110 (21%) Query: 215 MITHLGVYRTETFKKIGGFREKFEGAQDYDL---------VLRFLENIDLSQIIHIPRVL 265 ++ + G+ R TFKK+ RE +E D +L VL ++ + +II I ++ Sbjct: 88 LVNNAGITRDRTFKKLN--REDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSII 145 Query: 266 YHWRMHDNSTAQKIGNKNY-AGKAG----ERALNEHFQRTGIAAKAVFDG 310 A G NY A KAG ++L +T + A+ G Sbjct: 146 --------GQAGGFGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPG 187 >gnl|CDD|173172 PRK14709, PRK14709, hypothetical protein; Provisional. Length = 469 Score = 28.9 bits (65), Expect = 4.1 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 10/64 (15%) Query: 522 EKNTPVVFSDIDL--------CLRILEAGYRNVWTPHADLYHDESRTRKYDHEDPAKMIV 573 + T F++ D C I++ G W DLY + + E Sbjct: 376 TEATEEYFAEQDTFGQWLEERC--IVDPGNPVCWDVLQDLYASWCEFARAEGEPAGTAKE 433 Query: 574 FQEA 577 F E Sbjct: 434 FGER 437 >gnl|CDD|179850 PRK04443, PRK04443, acetyl-lysine deacetylase; Provisional. Length = 348 Score = 28.4 bits (64), Expect = 6.1 Identities = 8/33 (24%), Positives = 16/33 (48%) Query: 126 IKVVFRAKNGHISAASNSAAQLATSEWLALLDH 158 + V +++ H + +AA+ A WLA+ Sbjct: 163 VTYVATSESFHSAGPEPNAAEDAIEWWLAVEAW 195 >gnl|CDD|182669 PRK10714, PRK10714, undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional. Length = 325 Score = 27.8 bits (62), Expect = 8.0 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 10/48 (20%) Query: 326 VSIIIPTYNHHHLLKICLESIYHKTTYS------SFEVIIIDNLSDDS 367 VS++IP YN L + +TT + +E+++ID+ S D+ Sbjct: 8 VSVVIPVYNEQESLPELIR----RTTAACESLGKEYEILLIDDGSSDN 51 >gnl|CDD|181233 PRK08116, PRK08116, hypothetical protein; Validated. Length = 268 Score = 27.7 bits (62), Expect = 8.8 Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 50/175 (28%) Query: 4 SCKCVVKSLLRKIKLKFPSRHKRRI---IKFENFEKEYREW---SSLFHDTSPQFTKKIL 57 C+C ++ K + + +RRI ++++R + LF S + K Sbjct: 42 MCECEREAEEAKEREEENREKQRRIERLKSNSLLDEKFRNSTFENFLFDKGSEKAYKI-- 99 Query: 58 QNISQWQNKPLISVIMPVYKIKKEWLEMAIESVRSQIY-------SHWELCIAEDCSGDI 110 K K++ EM E+V ++ ++ CIA Sbjct: 100 -----------------ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIAN------ 136 Query: 111 ETVSLLKKYANMDSRIKVVFRAKNG---HISAASNSAAQLATSEWLALLDHDDLL 162 L++K + V+F I + S+ + +E + L + DLL Sbjct: 137 ---ELIEKG------VPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLL 182 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.136 0.422 Gapped Lambda K H 0.267 0.0669 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 10,368,417 Number of extensions: 673427 Number of successful extensions: 1335 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1320 Number of HSP's successfully gapped: 29 Length of query: 623 Length of database: 5,994,473 Length adjustment: 99 Effective length of query: 524 Effective length of database: 3,855,281 Effective search space: 2020167244 Effective search space used: 2020167244 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 60 (27.0 bits)