BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780918|ref|YP_003065331.1| glycosyl transferase family protein [Candidatus Liberibacter asiaticus str. psy62] (623 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780918|ref|YP_003065331.1| glycosyl transferase family protein [Candidatus Liberibacter asiaticus str. psy62] Length = 623 Score = 1310 bits (3389), Expect = 0.0, Method: Compositional matrix adjust. Identities = 623/623 (100%), Positives = 623/623 (100%) Query: 1 MIQSCKCVVKSLLRKIKLKFPSRHKRRIIKFENFEKEYREWSSLFHDTSPQFTKKILQNI 60 MIQSCKCVVKSLLRKIKLKFPSRHKRRIIKFENFEKEYREWSSLFHDTSPQFTKKILQNI Sbjct: 1 MIQSCKCVVKSLLRKIKLKFPSRHKRRIIKFENFEKEYREWSSLFHDTSPQFTKKILQNI 60 Query: 61 SQWQNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYA 120 SQWQNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYA Sbjct: 61 SQWQNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYA 120 Query: 121 NMDSRIKVVFRAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNA 180 NMDSRIKVVFRAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNA Sbjct: 121 NMDSRIKVVFRAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNA 180 Query: 181 EIIYSDEDKINENQIRSGPYFKYDFNPELFHVHNMITHLGVYRTETFKKIGGFREKFEGA 240 EIIYSDEDKINENQIRSGPYFKYDFNPELFHVHNMITHLGVYRTETFKKIGGFREKFEGA Sbjct: 181 EIIYSDEDKINENQIRSGPYFKYDFNPELFHVHNMITHLGVYRTETFKKIGGFREKFEGA 240 Query: 241 QDYDLVLRFLENIDLSQIIHIPRVLYHWRMHDNSTAQKIGNKNYAGKAGERALNEHFQRT 300 QDYDLVLRFLENIDLSQIIHIPRVLYHWRMHDNSTAQKIGNKNYAGKAGERALNEHFQRT Sbjct: 241 QDYDLVLRFLENIDLSQIIHIPRVLYHWRMHDNSTAQKIGNKNYAGKAGERALNEHFQRT 300 Query: 301 GIAAKAVFDGAQYRTHYMIPNPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIII 360 GIAAKAVFDGAQYRTHYMIPNPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIII Sbjct: 301 GIAAKAVFDGAQYRTHYMIPNPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIII 360 Query: 361 DNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHAKGQYFCFLNNDTEV 420 DNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHAKGQYFCFLNNDTEV Sbjct: 361 DNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHAKGQYFCFLNNDTEV 420 Query: 421 INGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHK 480 INGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHK Sbjct: 421 INGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHK 480 Query: 481 ARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILE 540 ARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILE Sbjct: 481 ARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILE 540 Query: 541 AGYRNVWTPHADLYHDESRTRKYDHEDPAKMIVFQEACQYLQKRWKKIIEKDPCYNPNLS 600 AGYRNVWTPHADLYHDESRTRKYDHEDPAKMIVFQEACQYLQKRWKKIIEKDPCYNPNLS Sbjct: 541 AGYRNVWTPHADLYHDESRTRKYDHEDPAKMIVFQEACQYLQKRWKKIIEKDPCYNPNLS 600 Query: 601 LLHEGGHTLAYPPRLDCLSSPTK 623 LLHEGGHTLAYPPRLDCLSSPTK Sbjct: 601 LLHEGGHTLAYPPRLDCLSSPTK 623 >gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter asiaticus str. psy62] Length = 1775 Score = 25.4 bits (54), Expect = 3.1, Method: Compositional matrix adjust. Identities = 30/128 (23%), Positives = 62/128 (48%), Gaps = 9/128 (7%) Query: 35 EKEYREWSSLFHDTSPQFTKKILQNISQWQNKPL---ISVIMPV--YKIKKEWL-EMAIE 88 EK + +S L P F++KIL N ++N L ++V +PV +++ ++ I+ Sbjct: 767 EKYWESFSGLMQCFPPVFSQKILPNRQGFENAVLLMELAVELPVSLLRLRDDFFNNSGID 826 Query: 89 SVRSQIYSHWE-LCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQL 147 SV +++ + L I ++ D+ + L + KV+ A G +S+ ++ + Sbjct: 827 SVLEELFERLDSLKILQESLDDVFNMKKLPDAQVLQDLNKVLHSA--GLLSSWWGASCKK 884 Query: 148 ATSEWLAL 155 A + L+L Sbjct: 885 AKASLLSL 892 >gi|254780222|ref|YP_003064635.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 686 Score = 25.0 bits (53), Expect = 3.9, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Query: 515 MHVGGFDEKNTPVVFSD-IDLCLRILEAGYRNV 546 M++GG DEK +FS+ ID + + AGY N+ Sbjct: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 >gi|254780486|ref|YP_003064899.1| 8-amino-7-oxononanoate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 381 Score = 24.6 bits (52), Expect = 5.0, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 366 DSKTFLYLQK-IQKKYPNLRVITDNTHPFNYSRINNNATLHA 406 D+K+ L + K +QKK ++R I T P N +R+ + TL+ Sbjct: 319 DNKSCLNIAKNLQKKGFDIRAIRPPTVPINTARLRISITLNV 360 >gi|254780572|ref|YP_003064985.1| hypothetical protein CLIBASIA_02295 [Candidatus Liberibacter asiaticus str. psy62] Length = 192 Score = 24.3 bits (51), Expect = 6.8, Method: Compositional matrix adjust. Identities = 10/35 (28%), Positives = 18/35 (51%) Query: 260 HIPRVLYHWRMHDNSTAQKIGNKNYAGKAGERALN 294 ++ R YHW + + Q I + + GK G+ L+ Sbjct: 148 NVLRAYYHWPLFTDLMRQYISSVKHPGKKGDFLLS 182 >gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus Liberibacter asiaticus str. psy62] Length = 227 Score = 23.9 bits (50), Expect = 7.9, Method: Compositional matrix adjust. Identities = 12/28 (42%), Positives = 16/28 (57%) Query: 361 DNLSDDSKTFLYLQKIQKKYPNLRVITD 388 + LSDD K+FL KI Y R++ D Sbjct: 75 NKLSDDKKSFLRCSKIGFVYQEHRLLMD 102 >gi|254780909|ref|YP_003065322.1| hypothetical protein CLIBASIA_04040 [Candidatus Liberibacter asiaticus str. psy62] Length = 159 Score = 23.9 bits (50), Expect = 8.0, Method: Composition-based stats. Identities = 12/22 (54%), Positives = 13/22 (59%) Query: 172 DAINNNPNAEIIYSDEDKINEN 193 D INN NA S +DKI EN Sbjct: 134 DGINNQSNATNDPSSKDKIAEN 155 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.136 0.422 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 428,764 Number of Sequences: 1233 Number of extensions: 18434 Number of successful extensions: 52 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 11 length of query: 623 length of database: 328,796 effective HSP length: 79 effective length of query: 544 effective length of database: 231,389 effective search space: 125875616 effective search space used: 125875616 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 41 (20.4 bits)