BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780918|ref|YP_003065331.1| glycosyl transferase family
protein [Candidatus Liberibacter asiaticus str. psy62]
         (623 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780918|ref|YP_003065331.1| glycosyl transferase family protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 623

 Score = 1310 bits (3389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/623 (100%), Positives = 623/623 (100%)

Query: 1   MIQSCKCVVKSLLRKIKLKFPSRHKRRIIKFENFEKEYREWSSLFHDTSPQFTKKILQNI 60
           MIQSCKCVVKSLLRKIKLKFPSRHKRRIIKFENFEKEYREWSSLFHDTSPQFTKKILQNI
Sbjct: 1   MIQSCKCVVKSLLRKIKLKFPSRHKRRIIKFENFEKEYREWSSLFHDTSPQFTKKILQNI 60

Query: 61  SQWQNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYA 120
           SQWQNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYA
Sbjct: 61  SQWQNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYA 120

Query: 121 NMDSRIKVVFRAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNA 180
           NMDSRIKVVFRAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNA
Sbjct: 121 NMDSRIKVVFRAKNGHISAASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNA 180

Query: 181 EIIYSDEDKINENQIRSGPYFKYDFNPELFHVHNMITHLGVYRTETFKKIGGFREKFEGA 240
           EIIYSDEDKINENQIRSGPYFKYDFNPELFHVHNMITHLGVYRTETFKKIGGFREKFEGA
Sbjct: 181 EIIYSDEDKINENQIRSGPYFKYDFNPELFHVHNMITHLGVYRTETFKKIGGFREKFEGA 240

Query: 241 QDYDLVLRFLENIDLSQIIHIPRVLYHWRMHDNSTAQKIGNKNYAGKAGERALNEHFQRT 300
           QDYDLVLRFLENIDLSQIIHIPRVLYHWRMHDNSTAQKIGNKNYAGKAGERALNEHFQRT
Sbjct: 241 QDYDLVLRFLENIDLSQIIHIPRVLYHWRMHDNSTAQKIGNKNYAGKAGERALNEHFQRT 300

Query: 301 GIAAKAVFDGAQYRTHYMIPNPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIII 360
           GIAAKAVFDGAQYRTHYMIPNPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIII
Sbjct: 301 GIAAKAVFDGAQYRTHYMIPNPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIII 360

Query: 361 DNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHAKGQYFCFLNNDTEV 420
           DNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHAKGQYFCFLNNDTEV
Sbjct: 361 DNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHAKGQYFCFLNNDTEV 420

Query: 421 INGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHK 480
           INGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHK
Sbjct: 421 INGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHK 480

Query: 481 ARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILE 540
           ARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILE
Sbjct: 481 ARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILE 540

Query: 541 AGYRNVWTPHADLYHDESRTRKYDHEDPAKMIVFQEACQYLQKRWKKIIEKDPCYNPNLS 600
           AGYRNVWTPHADLYHDESRTRKYDHEDPAKMIVFQEACQYLQKRWKKIIEKDPCYNPNLS
Sbjct: 541 AGYRNVWTPHADLYHDESRTRKYDHEDPAKMIVFQEACQYLQKRWKKIIEKDPCYNPNLS 600

Query: 601 LLHEGGHTLAYPPRLDCLSSPTK 623
           LLHEGGHTLAYPPRLDCLSSPTK
Sbjct: 601 LLHEGGHTLAYPPRLDCLSSPTK 623


>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1775

 Score = 25.4 bits (54), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 62/128 (48%), Gaps = 9/128 (7%)

Query: 35  EKEYREWSSLFHDTSPQFTKKILQNISQWQNKPL---ISVIMPV--YKIKKEWL-EMAIE 88
           EK +  +S L     P F++KIL N   ++N  L   ++V +PV   +++ ++     I+
Sbjct: 767 EKYWESFSGLMQCFPPVFSQKILPNRQGFENAVLLMELAVELPVSLLRLRDDFFNNSGID 826

Query: 89  SVRSQIYSHWE-LCIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHISAASNSAAQL 147
           SV  +++   + L I ++   D+  +  L     +    KV+  A  G +S+   ++ + 
Sbjct: 827 SVLEELFERLDSLKILQESLDDVFNMKKLPDAQVLQDLNKVLHSA--GLLSSWWGASCKK 884

Query: 148 ATSEWLAL 155
           A +  L+L
Sbjct: 885 AKASLLSL 892


>gi|254780222|ref|YP_003064635.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 686

 Score = 25.0 bits (53), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 515 MHVGGFDEKNTPVVFSD-IDLCLRILEAGYRNV 546
           M++GG DEK    +FS+ ID  +  + AGY N+
Sbjct: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96


>gi|254780486|ref|YP_003064899.1| 8-amino-7-oxononanoate synthase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 381

 Score = 24.6 bits (52), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 366 DSKTFLYLQK-IQKKYPNLRVITDNTHPFNYSRINNNATLHA 406
           D+K+ L + K +QKK  ++R I   T P N +R+  + TL+ 
Sbjct: 319 DNKSCLNIAKNLQKKGFDIRAIRPPTVPINTARLRISITLNV 360


>gi|254780572|ref|YP_003064985.1| hypothetical protein CLIBASIA_02295 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 192

 Score = 24.3 bits (51), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 260 HIPRVLYHWRMHDNSTAQKIGNKNYAGKAGERALN 294
           ++ R  YHW +  +   Q I +  + GK G+  L+
Sbjct: 148 NVLRAYYHWPLFTDLMRQYISSVKHPGKKGDFLLS 182


>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 227

 Score = 23.9 bits (50), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 361 DNLSDDSKTFLYLQKIQKKYPNLRVITD 388
           + LSDD K+FL   KI   Y   R++ D
Sbjct: 75  NKLSDDKKSFLRCSKIGFVYQEHRLLMD 102


>gi|254780909|ref|YP_003065322.1| hypothetical protein CLIBASIA_04040 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 159

 Score = 23.9 bits (50), Expect = 8.0,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 172 DAINNNPNAEIIYSDEDKINEN 193
           D INN  NA    S +DKI EN
Sbjct: 134 DGINNQSNATNDPSSKDKIAEN 155


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.136    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 428,764
Number of Sequences: 1233
Number of extensions: 18434
Number of successful extensions: 52
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 11
length of query: 623
length of database: 328,796
effective HSP length: 79
effective length of query: 544
effective length of database: 231,389
effective search space: 125875616
effective search space used: 125875616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 41 (20.4 bits)