HHSEARCH alignment of GI: 254780919 and SCOP domain: d1ep0a_

Alignment
>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=100.00  E-value=0  Score=401.60  Aligned_cols=174  Identities=44%  Similarity=0.760  Sum_probs=167.4

Q ss_pred             CCCCCEEEEECCEEEECCCEEEEEECHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHH
Q ss_conf             96575399707622037950421108898986799874134423312520000000155555440121000022222343
Q gi|254780919|r    1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIA   80 (198)
Q Consensus         1 L~I~gv~ii~~~~f~D~RG~f~e~f~~~~~~~~~~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvv   80 (198)
                      .+|+||+++++++|.|+||+|.|+|+.+.+.+.+.+..|+|+|+|.| ++||+||||||.+| +|+|||+|++|+|+||+
T Consensus         7 t~i~gv~ii~~~~f~D~RG~f~e~f~~~~~~~~~~~~~~~q~n~s~s-~~~vlRG~H~q~~~-~q~Klv~~~~G~I~dv~   84 (183)
T d1ep0a_           7 TSLDGAIIIEPEVYTDERGYFMETFNEAIFQENGLEVRFVQDNESMS-VRGVLRGLHFQREK-PQGKLVRVIRGEIFDVA   84 (183)
T ss_dssp             CSSTTCEEEEECEEEETTEEEECCCCHHHHHHTTCCCCCCEEEEEEE-ETTBEEEEEEESSS-CCCEEEEEEESEEEEEE
T ss_pred             CCCCCCEEEECCEEECCCCCEEEEHHHHHHHHHCCCCEEEEEEEEEE-CCCCEEEEEECCCC-CHHHHHCCCCCEEEEEE
T ss_conf             55897189979525898968776001578987089850667553461-36712776544897-48866003466799999


Q ss_pred             HHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCHHCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             34064213331001136623653023330232203453074533897217876710170216888011774788876763
Q gi|254780919|r   81 VDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILP  160 (198)
Q Consensus        81 vDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~~~~y~p~~e~~i~~~Dp~l~i~Wp~~~~~~p  160 (198)
                      ||+|++|||||++.+++|+++++++|+||+||||||+||+|+|+++|++|++|+|+.|.||+|+||.|+|+||++....|
T Consensus        85 vD~R~~S~tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~s~~y~p~~e~~i~~~Dp~l~i~Wp~~~~~~~  164 (183)
T d1ep0a_          85 VDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYKCTELYHPEYDSGIPWDDPDIGIDWPLEMVDDL  164 (183)
T ss_dssp             EECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEESSCCCGGGEEECCTTCTTTCCCCCGGGCSSC
T ss_pred             EECCCCCCCCCEEEEEEECCCCCCEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             86247987477066777237775125705882455330067508999525776813441106888101888889988887


Q ss_pred             EECHHHHCCCCHHHCC
Q ss_conf             0167884599877818
Q gi|254780919|r  161 SVSEKDQNLPFLNQID  176 (198)
Q Consensus       161 iiS~kD~~~p~l~d~~  176 (198)
                      |||+||+++|.|+|++
T Consensus       165 iiS~kD~~~~~l~e~~  180 (183)
T d1ep0a_         165 IISEKDRNWKPLRENP  180 (183)
T ss_dssp             BCCHHHHTCCCTTTSC
T ss_pred             EECHHHCCCCCHHHCH
T ss_conf             9878993998926451


SCOP domain information

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]