BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780919|ref|YP_003065332.1| dTDP-4-dehydrorhamnose
3,5-epimerase [Candidatus Liberibacter asiaticus str. psy62]
(198 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780919|ref|YP_003065332.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040596|gb|ACT57392.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 198
Score = 414 bits (1063), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/198 (100%), Positives = 198/198 (100%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR
Sbjct: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE
Sbjct: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE
Sbjct: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
Query: 181 YDGLPLLSLNMERDLLCV 198
YDGLPLLSLNMERDLLCV
Sbjct: 181 YDGLPLLSLNMERDLLCV 198
>gi|315122655|ref|YP_004063144.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496057|gb|ADR52656.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 199
Score = 317 bits (811), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 144/196 (73%), Positives = 170/196 (86%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
INPVRILKT+ ED RGWFS+TY+ K+ G +DVFVQDNHSFS + GTIRGLHFQ+PP
Sbjct: 4 INPVRILKTKILEDDRGWFSETYNDNCFKKNGFKDVFVQDNHSFSLNTGTIRGLHFQKPP 63
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQAK+VRC++GRIFD+AVD+R++SPTYG W+SLEISA++GLQIYIP GFAHGFMTLE N
Sbjct: 64 HAQAKIVRCVSGRIFDVAVDVRKDSPTYGNWISLEISASSGLQIYIPIGFAHGFMTLEPN 123
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
TEVIYKVTDFYS HDSGV WQDKSI I WPLL+ + PS+S+KD NLPFLNQ+DSPF YD
Sbjct: 124 TEVIYKVTDFYSSSHDSGVLWQDKSIGIRWPLLEKVSPSLSDKDMNLPFLNQLDSPFTYD 183
Query: 183 GLPLLSLNMERDLLCV 198
G PLL L+M+RD+ CV
Sbjct: 184 GFPLLPLDMDRDMSCV 199
>gi|254500091|ref|ZP_05112243.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Labrenzia alexandrii DFL-11]
gi|222441389|gb|EEE48067.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Labrenzia alexandrii DFL-11]
Length = 192
Score = 224 bits (572), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 135/187 (72%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V ++ R+F D RGWF+++Y+ + L+ LG+ FVQDNHS S GT+RGLHFQ PP+AQ
Sbjct: 5 VTLIHPRRFGDDRGWFTESYNKQKLEPLGITCDFVQDNHSLSVPTGTLRGLHFQTPPFAQ 64
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVRCI G++FD+AVDIR+ SPTYG WV +E+SA NG Q+ +P G+AHGF+TLE NTEV
Sbjct: 65 DKLVRCIRGKVFDVAVDIRKGSPTYGKWVGVELSAENGDQLLVPAGYAHGFVTLEDNTEV 124
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLP 185
YKV+++YS ++D+G+ W D I I WPL P +S KD P L DSPF+YDG P
Sbjct: 125 TYKVSNYYSPQNDAGLMWDDADIGIDWPLAAGAEPILSGKDTQHPGLADFDSPFDYDGTP 184
Query: 186 LLSLNME 192
+ + +E
Sbjct: 185 MTLVEIE 191
>gi|302382272|ref|YP_003818095.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brevundimonas subvibrioides
ATCC 15264]
gi|302192900|gb|ADL00472.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brevundimonas subvibrioides
ATCC 15264]
Length = 205
Score = 223 bits (568), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 102/182 (56%), Positives = 131/182 (71%), Gaps = 1/182 (0%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+ ++R+F D RGWF++TYS + L + G+ D FVQDN S S GT+RG+HFQRPP+AQAK
Sbjct: 22 LYESRRFGDDRGWFTETYSERALADRGVSDRFVQDNQSLSIAPGTVRGIHFQRPPFAQAK 81
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVRC+ GRI D AVD+RR SPTYG WVS E++A+NGLQ+Y+P G+ H F+TLE TEV+Y
Sbjct: 82 LVRCLRGRIMDYAVDLRRGSPTYGDWVSAELTADNGLQLYVPVGYGHAFVTLEPRTEVVY 141
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLPLL 187
KV Y+ + D G+ W D I I W L + P +SEKD+ LP L DSPF+YDG PL
Sbjct: 142 KVNAVYAADCDGGIVWDDPDIGIEWSLPPSG-PLLSEKDRQLPRLADFDSPFDYDGRPLE 200
Query: 188 SL 189
L
Sbjct: 201 PL 202
>gi|312115798|ref|YP_004013394.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodomicrobium vannielii ATCC
17100]
gi|311220927|gb|ADP72295.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodomicrobium vannielii ATCC
17100]
Length = 196
Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 95/176 (53%), Positives = 129/176 (73%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +++ R+FED RGWFS+TY+ + ++ GL+ FVQDNHS S + T+RGLHFQRPP+AQ
Sbjct: 5 VLLIRPRRFEDDRGWFSETYNERNFRQAGLESRFVQDNHSLSREKYTLRGLHFQRPPFAQ 64
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
+KLVRC GRIFD+ VDIR SP++G W+S E+SA G Q+++P GF HGF+TL +TE+
Sbjct: 65 SKLVRCSKGRIFDVTVDIRIGSPSFGGWISTELSAEGGEQLFVPAGFLHGFLTLTPDTEI 124
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
IYKV+DFY D+GV W D I + W L + + P++S KD+ LP L IDSPF +
Sbjct: 125 IYKVSDFYDGASDAGVRWDDPMIAVNWSLPEGVPPTLSAKDRALPLLAAIDSPFMF 180
>gi|148556919|ref|YP_001264501.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingomonas wittichii RW1]
gi|148502109|gb|ABQ70363.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingomonas wittichii RW1]
Length = 185
Score = 214 bits (544), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 102/185 (55%), Positives = 130/185 (70%), Gaps = 1/185 (0%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
PV+++ TR+F D RGWFS+TY G + FVQDNHS+S GT+RG+HFQ PP+A
Sbjct: 2 PVKLIHTRRFGDDRGWFSETYHRPRWTADGAAEEFVQDNHSYSKHAGTLRGIHFQAPPHA 61
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
QAKLVRCI GRI D AVD+R SPTYG V+ E+SA+NG Q+YIP GF H F+TLE ++E
Sbjct: 62 QAKLVRCIRGRILDYAVDLRAGSPTYGRHVAAELSADNGDQLYIPVGFGHAFVTLEPDSE 121
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGL 184
VIYKV+D Y+ + D G++W ++ I WPL P +S+KD+ LP L DSPF YDG
Sbjct: 122 VIYKVSDVYAPDVDGGISWDCPTLAIDWPLPPG-GPVLSDKDRTLPHLADWDSPFAYDGA 180
Query: 185 PLLSL 189
PL L
Sbjct: 181 PLRPL 185
>gi|90425680|ref|YP_534050.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
BisB18]
gi|90107694|gb|ABD89731.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
BisB18]
Length = 184
Score = 206 bits (523), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 97/180 (53%), Positives = 125/180 (69%), Gaps = 2/180 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NI V +L ++F D RGWF +TYS L+ LG++ FVQDNHS S GT+RGLHFQ
Sbjct: 6 LNIPGVVVLTPKRFADDRGWFMETYSHPALQALGIELDFVQDNHSLSLHTGTLRGLHFQT 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQAKLVRC+ GRI D+AVD+R NSPTYG + S E+SA + QI+IP GFAHGF+TLE
Sbjct: 66 PPHAQAKLVRCVRGRILDVAVDVRANSPTYGQYASAELSAADARQIFIPVGFAHGFVTLE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+TEV+YKV+D Y+ + D G+ W D +I W + P +S KD+ LP L SPF
Sbjct: 126 PDTEVVYKVSDIYAPQCDGGIRWNDPTIAFPWNIEHG--PFLSPKDEKLPLLADFVSPFR 183
>gi|316935627|ref|YP_004110609.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
DX-1]
gi|315603341|gb|ADU45876.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
DX-1]
Length = 184
Score = 204 bits (520), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 95/179 (53%), Positives = 123/179 (68%), Gaps = 1/179 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V++L R+F D RGWFS++Y+ K L + + FVQDNHS+S GTIRG HFQ
Sbjct: 6 LDIPGVKLLSPRRFSDDRGWFSESYNQKTLAQFDIHWQFVQDNHSYSKHAGTIRGFHFQA 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVRC+ G I DIAVD+R SPTY WV+ E+SA NG Q+++P GFAH F+TL+
Sbjct: 66 PPHAQDKLVRCVRGSIVDIAVDLRAGSPTYAKWVAAELSAENGEQLFVPVGFAHAFITLQ 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+TEV+YKVT FY+ E D GV W D +I W L P +S KD LP L I++PF
Sbjct: 126 PDTEVLYKVTSFYAPESDGGVRWDDPTIGFPWKLPQGA-PHLSAKDAKLPRLQDIETPF 183
>gi|195953910|ref|YP_002122200.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hydrogenobaculum sp. Y04AAS1]
gi|195933522|gb|ACG58222.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hydrogenobaculum sp. Y04AAS1]
Length = 190
Score = 203 bits (516), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/183 (51%), Positives = 129/183 (70%), Gaps = 2/183 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V ++K + F+D RG+F ++Y ++ G+ D+F+QDNHS S G +RGLH+Q+
Sbjct: 9 DIKEVILIKPKVFKDERGFFLESYKKSEFEKNGITDIFIQDNHSKSVK-GVLRGLHYQKE 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVRCI G+IFD+AVDIR+NSPTYG WV E+S N L ++IP GFAHGF+TL
Sbjct: 68 PEAQGKLVRCIKGKIFDVAVDIRKNSPTYGRWVGYELSEENKLMLFIPKGFAHGFLTLSE 127
Query: 122 NTEVIYKVTDF-YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
E+IYKV++ YS EHD G+ W DK+I+I WPL + +S+KD+NLP L Q D+ F
Sbjct: 128 EAEIIYKVSEAEYSKEHDKGIIWNDKTINIKWPLENIKEVILSDKDKNLPTLEQADNNFL 187
Query: 181 YDG 183
Y G
Sbjct: 188 YGG 190
>gi|83955938|ref|ZP_00964449.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfitobacter sp. NAS-14.1]
gi|83839702|gb|EAP78880.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfitobacter sp. NAS-14.1]
Length = 198
Score = 202 bits (515), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/179 (53%), Positives = 124/179 (69%), Gaps = 1/179 (0%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I+ +F D RG+FS++YS+K L E G+ FVQDNHS S GTIRGLHFQ PP+AQ
Sbjct: 21 VIIITPARFGDHRGFFSESYSAKALAEHGITTQFVQDNHSLSMTQGTIRGLHFQVPPHAQ 80
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVRC G +FD+AVDIR+ SPTYG W +E+S NG Q+ +P GFAHGF+T TE+
Sbjct: 81 DKLVRCGRGALFDVAVDIRKGSPTYGQWFGVELSFENGKQLLVPAGFAHGFVTRAPETEI 140
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGL 184
IYK +D+Y+ E + VAW D + I W L + I P +SEKD N P L ++SPF ++G+
Sbjct: 141 IYKCSDYYAQETEGAVAWDDPQVGIDWGLGE-IAPVLSEKDANAPSLAALNSPFTFEGV 198
>gi|195953941|ref|YP_002122231.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hydrogenobaculum sp. Y04AAS1]
gi|195933553|gb|ACG58253.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hydrogenobaculum sp. Y04AAS1]
Length = 190
Score = 201 bits (511), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 94/183 (51%), Positives = 127/183 (69%), Gaps = 2/183 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V ++K + F+D RG+F ++Y ++ G+ D+F+QDNHS S G +RGLH+Q+
Sbjct: 9 DIKEVILIKPKVFKDERGFFLESYKKSEFEKNGITDIFIQDNHSKSVK-GVLRGLHYQKE 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL+RCI G+IFD+AVDIR+NSPTYG WV E+S N L ++IP GFAHGF+TL
Sbjct: 68 PAAQGKLIRCIKGKIFDVAVDIRKNSPTYGGWVGYELSEENKLMLFIPKGFAHGFLTLSE 127
Query: 122 NTEVIYKVTDF-YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
E+IYKV++ YS EHD G+ W DK+I I WPL +S+KD+NLP L Q D+ F
Sbjct: 128 EAEIIYKVSEAEYSKEHDKGIIWNDKTISIKWPLEHIKEIILSDKDKNLPTLEQADNNFL 187
Query: 181 YDG 183
Y G
Sbjct: 188 YGG 190
>gi|83944595|ref|ZP_00957045.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfitobacter sp. EE-36]
gi|83844572|gb|EAP82459.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfitobacter sp. EE-36]
Length = 190
Score = 201 bits (510), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 92/179 (51%), Positives = 125/179 (69%), Gaps = 1/179 (0%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V ++ +F D RG+FS++YS++ L E G+ FVQDNHS S GTIRGLHFQ PP+AQ
Sbjct: 13 VIVITPARFGDYRGFFSESYSAEALAEHGITTPFVQDNHSLSMTQGTIRGLHFQAPPHAQ 72
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVRC G +FD+AVDIR+ SPTYG W +E+S NG Q+ +P GFAHGF+T TE+
Sbjct: 73 DKLVRCGRGALFDVAVDIRKGSPTYGQWFGVELSFENGKQLLVPAGFAHGFVTRAPETEI 132
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGL 184
+YK +D+Y+ E + VAW D ++ I W L D + P +SEKD N P L ++SPF ++G+
Sbjct: 133 VYKCSDYYARETEGAVAWDDPAVGIDWGLGD-MTPVLSEKDANAPALADLNSPFTFEGV 190
>gi|170288107|ref|YP_001738345.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermotoga sp. RQ2]
gi|33413323|emb|CAD67948.1| putative dTDP-6-deoxy-D-glucose-3,5-epimerase [Thermotoga sp. RQ2]
gi|170175610|gb|ACB08662.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermotoga sp. RQ2]
Length = 188
Score = 199 bits (507), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 95/176 (53%), Positives = 119/176 (67%), Gaps = 3/176 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I++ R FED RGWF ++YS ++ KELG+ VFVQDNHS+S GT+RG+HFQ P AQ
Sbjct: 11 VLIIEPRVFEDERGWFMESYSYRVFKELGIDVVFVQDNHSYSKKKGTLRGIHFQNDPMAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
+KLVRC GRI D+AVD+R+ SPTY W+ LE+S N ++IP GF H F+TL + EV
Sbjct: 71 SKLVRCTRGRILDVAVDLRKGSPTYKKWIMLELSEENKRMLFIPRGFGHAFLTLTDDVEV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YKV +YS EHD + W D I I WP+ D IL SEKD+N PFL D F Y
Sbjct: 131 QYKVDQYYSKEHDRSIRWNDPDIGIDWPIKDPIL---SEKDRNAPFLKDSDCNFIY 183
>gi|222099006|ref|YP_002533574.1| Putative dTDP-6-deoxy-D-glucose-3,5-epimerase [Thermotoga
neapolitana DSM 4359]
gi|221571396|gb|ACM22208.1| Putative dTDP-6-deoxy-D-glucose-3,5-epimerase [Thermotoga
neapolitana DSM 4359]
Length = 188
Score = 199 bits (505), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 120/178 (67%), Gaps = 3/178 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I++ R FED RGWF ++YS ++ KELG+ VFVQDNHS+S GT+RG+HFQ P AQ
Sbjct: 11 VLIIEPRVFEDERGWFMESYSYRVFKELGIDAVFVQDNHSYSKRKGTLRGIHFQNNPVAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKLVRC G+I D+AVD+R+ SPTY W+ +E+S N ++IP GF H F+TL + EV
Sbjct: 71 AKLVRCTRGKILDVAVDLRKGSPTYKKWIMVELSEENKRMLFIPKGFGHAFLTLTDDVEV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
YKV +YS EHD + W D I I WP+ + IL SEKD+N PFL D F Y G
Sbjct: 131 QYKVDQYYSKEHDRSIRWNDPDIGIDWPIEEPIL---SEKDRNAPFLKDSDCNFVYGG 185
>gi|126741092|ref|ZP_01756774.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseobacter sp. SK209-2-6]
gi|126717856|gb|EBA14576.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseobacter sp. SK209-2-6]
Length = 197
Score = 197 bits (500), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 95/177 (53%), Positives = 126/177 (71%), Gaps = 4/177 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
++IL+ +F D+RG+FS++++ + ++E G+ FVQDNHS S + GT+RGLHFQ PP+AQ
Sbjct: 22 LKILEPARFGDARGFFSESWNQRRMQEHGIDLDFVQDNHSLSSEVGTLRGLHFQSPPHAQ 81
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKLVRC GR+FD+AVDIR+ SPTYG W E+S +NGLQ+ IP GF HGF+T E +TE+
Sbjct: 82 AKLVRCGRGRLFDVAVDIRKGSPTYGKWFGTELSFDNGLQLLIPAGFLHGFITREPDTEI 141
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
IYK TD+Y+ E D VAW S DI W T P +S+KD P L DSPF Y+
Sbjct: 142 IYKCTDYYAPECDGAVAWD--SCDIDWGFEGT--PMLSDKDAAAPKLADFDSPFTYE 194
>gi|163793777|ref|ZP_02187751.1| dTDP-4-dehydrorhamnose 3,5-epimerase [alpha proteobacterium BAL199]
gi|159180888|gb|EDP65405.1| dTDP-4-dehydrorhamnose 3,5-epimerase [alpha proteobacterium BAL199]
Length = 185
Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 97/175 (55%), Positives = 120/175 (68%), Gaps = 1/175 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V+I++ +KF D RG+FS+TYS + L FVQDNHS S G +RGLHFQ
Sbjct: 6 LAIPDVKIIRPKKFGDHRGFFSETYSKPAFEAADLHLDFVQDNHSLSAASGVLRGLHFQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KL+R + GRIFD+AVDIR S TYG WVS EISA QI +P GFAHGF+TLE
Sbjct: 66 PPFAQDKLLRVVRGRIFDVAVDIRHGSATYGQWVSAEISAEEWNQILVPIGFAHGFVTLE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+TEVIYKVT Y+ EHD G+AW D + I WP L+ I P++SEKD P L +
Sbjct: 126 PDTEVIYKVTAPYAPEHDRGIAWDDPDLGIAWP-LEGIEPTLSEKDTRHPRLADL 179
>gi|110635095|ref|YP_675303.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mesorhizobium sp. BNC1]
gi|110286079|gb|ABG64138.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chelativorans sp. BNC1]
Length = 189
Score = 194 bits (494), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/181 (50%), Positives = 124/181 (68%), Gaps = 2/181 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M + V+ + KF D RG+FS+TY++K E G+ FVQDNHS S GT+RGLHFQ+
Sbjct: 7 MELEGVQEILPEKFSDERGFFSETYNAKAFAEAGIAVEFVQDNHSLSSVPGTVRGLHFQK 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVR + G I D+AVDIR SPT+G WV +E+S+ Q++IP G+AHGFMTLE
Sbjct: 67 PPFAQDKLVRVVRGAILDVAVDIRAGSPTFGRWVGVELSSRKWNQLFIPKGYAHGFMTLE 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+TEV+YKV+ FYS EHD + + D +I I WP I P +S KD+ P L ++++ F
Sbjct: 127 PDTEVVYKVSAFYSREHDQAIRFDDPAIGIAWP--KEIKPLLSGKDRAAPDLAEVETGFR 184
Query: 181 Y 181
Y
Sbjct: 185 Y 185
>gi|83950202|ref|ZP_00958935.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseovarius nubinhibens ISM]
gi|83838101|gb|EAP77397.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseovarius nubinhibens ISM]
Length = 180
Score = 194 bits (492), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 89/178 (50%), Positives = 127/178 (71%), Gaps = 1/178 (0%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V IL R+F D+RG+FS++++ ++++E G++ FVQDNHS S D GT+RGLHFQ PP+AQ
Sbjct: 4 VLILTPRRFADARGFFSESWNQRVMEEAGIEIAFVQDNHSLSRDVGTVRGLHFQSPPHAQ 63
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKLVRC G ++D+AVD+RR SP+YG WV +E+SA+NG Q+ IP GF HGF+T E +TEV
Sbjct: 64 AKLVRCGRGALYDVAVDVRRGSPSYGKWVGVELSADNGRQLLIPAGFLHGFVTREPDTEV 123
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
IYK +DFY+ E D V + D + I W ++ +S+KD+ D+PF ++G
Sbjct: 124 IYKCSDFYAPECDGAVRFDDPDLGIDWG-IEASAAVLSDKDRAAQSFAAFDTPFVWEG 180
>gi|228961527|ref|ZP_04123137.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228798145|gb|EEM45148.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar pakistani str. T13001]
Length = 186
Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 89/180 (49%), Positives = 121/180 (67%), Gaps = 2/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N+ V++++ + F D RGWF +T+S + ++E G+ FVQDN SFS GT+RGLH+Q
Sbjct: 7 NLLGVKVIEPKVFGDHRGWFMETFSDQAMREAGIDLKFVQDNQSFSATKGTLRGLHYQLN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVRC G IFD+AVDIR+ SPTYG W +E+SA N Q+ IP GFAHGFMTL
Sbjct: 67 PKAQTKLVRCTRGSIFDVAVDIRKGSPTYGQWFGIELSAENKKQLLIPKGFAHGFMTLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ EV YKV + Y+ E+D G+ W D + + WP+ I P +SEKD+ P L + ++ F Y
Sbjct: 127 DVEVQYKVDELYAPEYDRGIIWNDAEVGVEWPM--EIQPVLSEKDEKAPSLKEAENNFVY 184
>gi|118588016|ref|ZP_01545426.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stappia aggregata IAM 12614]
gi|118439638|gb|EAV46269.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stappia aggregata IAM 12614]
Length = 192
Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/183 (51%), Positives = 127/183 (69%), Gaps = 5/183 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I VRIL ++ DSRG+FS+TY+ LL + G+ F+QDNH++S + GT+RGLH+Q
Sbjct: 7 LDIPEVRILCPKRHGDSRGFFSETYNKALLSDAGIDIDFIQDNHAYSAEKGTVRGLHYQM 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVR + G I D+AVD+R SPTYG VS ISA NG QI +PTGFAHG +TLE
Sbjct: 67 PPFAQDKLVRVVRGAILDVAVDLRVGSPTYGQHVSSVISAENGKQILVPTGFAHGLVTLE 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQIDSP 178
+TEV+YKV+ +Y+ EHD G+ W D + I W L D +L S KD+ LP L ++ +
Sbjct: 127 PHTEVLYKVSQYYAPEHDRGILWNDPELAIDWGLAEADAVL---SPKDRKLPRLAEVAAC 183
Query: 179 FEY 181
F Y
Sbjct: 184 FSY 186
>gi|118593889|ref|ZP_01551247.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stappia aggregata IAM 12614]
gi|118433510|gb|EAV40179.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stappia aggregata IAM 12614]
Length = 188
Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/183 (51%), Positives = 127/183 (69%), Gaps = 5/183 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I VRIL ++ DSRG+FS+TY+ LL + G+ F+QDNH++S + GT+RGLH+Q
Sbjct: 7 LDIPEVRILCPKRHGDSRGFFSETYNKALLSDAGIDIDFIQDNHAYSAEKGTVRGLHYQM 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVR + G I D+AVD+R SPTYG VS ISA NG QI +PTGFAHG +TLE
Sbjct: 67 PPFAQDKLVRVVRGAILDVAVDLRVGSPTYGQHVSSVISAENGKQILVPTGFAHGLVTLE 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQIDSP 178
+TEV+YKV+ +Y+ EHD G+ W D + I W L D +L S KD+ LP L ++ +
Sbjct: 127 PHTEVLYKVSQYYAPEHDRGILWNDPELAIDWGLAEADAVL---SPKDRKLPRLAEVAAC 183
Query: 179 FEY 181
F Y
Sbjct: 184 FSY 186
>gi|84515472|ref|ZP_01002834.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Loktanella vestfoldensis
SKA53]
gi|84510755|gb|EAQ07210.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Loktanella vestfoldensis
SKA53]
Length = 200
Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/178 (51%), Positives = 120/178 (67%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V IL +F D+RG+FS++++ K L G+ FVQDNHS S GTIRGLHFQ PP+AQ
Sbjct: 23 VLILSPARFGDARGFFSESWNRKTLAAQGITLDFVQDNHSLSAQIGTIRGLHFQSPPHAQ 82
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKLVRC G +FD+AVDIRR+SPTYG W+ E+S NG Q+ IP GF HGF+T +TE+
Sbjct: 83 AKLVRCGRGCLFDVAVDIRRDSPTYGQWLGEELSDQNGRQLLIPAGFLHGFITRAPDTEI 142
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
IYK TD+Y+ D V + D I I W L + P +S+KD P L +D+PF ++G
Sbjct: 143 IYKCTDYYAPACDGAVRFDDPDIGIDWGLPAGVAPILSDKDAAAPLLRDLDTPFVFEG 200
>gi|306842189|ref|ZP_07474858.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella sp. BO2]
gi|306287776|gb|EFM59207.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella sp. BO2]
Length = 183
Score = 192 bits (487), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 121/172 (70%), Gaps = 1/172 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ ++ V + RKF D RG+FS+TY++K E G+ FVQDNHS+S G +RGLH+Q
Sbjct: 6 LGLDGVFEISPRKFGDDRGFFSETYNAKSFAEAGIDLTFVQDNHSYSAAKGVVRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVR G I D+AVDIR++SPT+G WV+LE+SA+ QI +P GFAHGFMTL
Sbjct: 66 PPFAQDKLVRVTRGAILDVAVDIRKSSPTFGKWVALEVSADKWNQILVPKGFAHGFMTLV 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
NTEVIYKVTD+YS EHD + + D +I I WP+ + + +S+KDQ P
Sbjct: 126 ENTEVIYKVTDYYSPEHDRSIRFDDPAIGIDWPVASSGV-QLSDKDQKAPLF 176
>gi|296505692|ref|YP_003667392.1| glucose-1-phosphate thymidylyltransferase [Bacillus thuringiensis
BMB171]
gi|296326744|gb|ADH09672.1| glucose-1-phosphate thymidylyltransferase [Bacillus thuringiensis
BMB171]
Length = 186
Score = 191 bits (485), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 90/180 (50%), Positives = 119/180 (66%), Gaps = 2/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N+ V++++ + F D RGWF +T+S + ++E G+ FVQDN SFS GT+RGLH+Q
Sbjct: 7 NLLGVKVIEPKVFGDHRGWFMETFSDQAMREAGIDLQFVQDNQSFSATKGTLRGLHYQLN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVRC G IFD+AVDIR+ SPTYG W +E+SA N Q+ IP GFAHGFMTL
Sbjct: 67 PKAQTKLVRCTRGSIFDVAVDIRKGSPTYGQWFGIELSAENKKQLLIPKGFAHGFMTLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ EV YKV + Y+ E D G+ W D + I WP+ I P +SEKD+ P L + + F Y
Sbjct: 127 DVEVQYKVDELYAPECDRGIIWNDAEVGIEWPM--EIQPVLSEKDEKAPSLKEAEKNFVY 184
>gi|119384854|ref|YP_915910.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paracoccus denitrificans
PD1222]
gi|119374621|gb|ABL70214.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paracoccus denitrificans
PD1222]
Length = 193
Score = 190 bits (482), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 94/179 (52%), Positives = 122/179 (68%), Gaps = 5/179 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V +L R+F D RG+F +++S K L + GL FVQDNHS S GT+RGLHFQ PP+A
Sbjct: 11 VLVLVPRRFGDERGFFCESWSRKTLHDAGLDLPEFVQDNHSLSAAAGTLRGLHFQAPPHA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRC GR+FD+AVDIR+ SP+YG W E+S NG Q++IP GF HGF+T E +TE
Sbjct: 71 QGKLVRCGRGRLFDVAVDIRKGSPSYGRWTGCELSFENGRQLWIPPGFLHGFVTREPDTE 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
++YK TD+Y+ + D VAW SI I W + + P +S KD P LN+ DSPF Y+G
Sbjct: 131 ILYKCTDYYAPDCDGAVAWD--SIGIDWGV--SGQPILSAKDAGAPVLNEFDSPFTYEG 185
>gi|254420592|ref|ZP_05034316.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brevundimonas sp. BAL3]
gi|196186769|gb|EDX81745.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brevundimonas sp. BAL3]
Length = 170
Score = 190 bits (482), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 93/167 (55%), Positives = 116/167 (69%), Gaps = 1/167 (0%)
Query: 23 QTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVD 82
+TYS G+ FVQDN SFS GTIRGLHFQRPP+AQAKLVRC+ G I D AVD
Sbjct: 2 ETYSEASATAAGVNARFVQDNQSFSAFQGTIRGLHFQRPPHAQAKLVRCVRGSIMDYAVD 61
Query: 83 IRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVA 142
IRR SPTYG V+ +++A G Q+++P GFAH F+TLE + EV YKV+D Y+ + D G+
Sbjct: 62 IRRGSPTYGQHVAAKLTAVGGEQLFVPVGFAHAFVTLEPDVEVAYKVSDVYAPDCDGGIV 121
Query: 143 WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLPLLSL 189
W D I I WPL ++ +S+KD+ LP L + DSPFEYDGLPL L
Sbjct: 122 WSDPIIGIDWPLPESGA-VLSDKDKILPTLAEFDSPFEYDGLPLAPL 167
>gi|16519754|ref|NP_443874.1| dTDP-rhamnose 3,5-epimerase RmlC [Sinorhizobium fredii NGR234]
gi|2500163|sp|P55468|RMLC_RHISN RecName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; AltName:
Full=Thymidine diphospho-4-keto-rhamnose 3,5-epimerase;
AltName: Full=dTDP-4-keto-6-deoxyglucose 3,5-epimerase;
AltName: Full=dTDP-6-deoxy-D-xylo-4-hexulose
3,5-epimerase; AltName: Full=dTDP-L-rhamnose synthase
gi|2182415|gb|AAB91686.1| dTDP-rhamnose 3,5-epimerase RmlC [Sinorhizobium fredii NGR234]
Length = 195
Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/181 (49%), Positives = 121/181 (66%), Gaps = 2/181 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V++++ RKF D RG+FS+ + K ++ VQDN S S GT+RGLHFQ
Sbjct: 14 LSIAEVKLIRPRKFGDCRGYFSEVFREKWFRKNVADVGLVQDNESLSAQIGTVRGLHFQL 73
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC G +FD+AVD+R SPTYG WVS E+S NG Q+++P GFAHGFMTL+
Sbjct: 74 EPFAQGKLVRCTRGALFDVAVDVRVGSPTYGKWVSAELSQENGAQLWVPAGFAHGFMTLK 133
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T + YKVT YS EHD G+ W D +I I WP + T + +SEKD + P L ++ F+
Sbjct: 134 ADTVISYKVTAPYSAEHDRGLKWDDPAIGINWPKMTTYV--LSEKDSSQPSLCELPVSFQ 191
Query: 181 Y 181
Y
Sbjct: 192 Y 192
>gi|254462855|ref|ZP_05076271.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacterales bacterium
HTCC2083]
gi|206679444|gb|EDZ43931.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacteraceae bacterium
HTCC2083]
Length = 189
Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 120/173 (69%), Gaps = 3/173 (1%)
Query: 12 RKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
++F D RG+F ++YS + +++GL FVQDN+S S GT+RGLHFQ PP+AQ KLVRC
Sbjct: 19 QRFGDERGFFCESYSKRRFEDIGLSFDFVQDNYSISAKAGTVRGLHFQAPPHAQTKLVRC 78
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
GR+ D+AVDIR+ SPTYG W S E+S NG+Q+ IP GF HGF+TLE NTE IYK D
Sbjct: 79 GQGRLLDVAVDIRKGSPTYGQWTSAEMSFENGVQLLIPKGFLHGFVTLEPNTETIYKSDD 138
Query: 132 FYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
+Y+ E D V + D I + W + L T++ +S+KD+ P L DSPF Y+G
Sbjct: 139 YYAPECDGAVRFDDPEIGVDWGIDLKTVI--LSDKDRAAPLLKDFDSPFVYEG 189
>gi|16127863|ref|NP_422427.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caulobacter crescentus CB15]
gi|221236684|ref|YP_002519121.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caulobacter crescentus
NA1000]
gi|13425385|gb|AAK25595.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caulobacter crescentus CB15]
gi|220965857|gb|ACL97213.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caulobacter crescentus
NA1000]
Length = 185
Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/187 (47%), Positives = 123/187 (65%), Gaps = 8/187 (4%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M I P+ I + + D RGWFS+T+ L+E G Q FVQDNH S G RG
Sbjct: 1 MKITPLAIPEVLLITPARHGDERGWFSETFRQSALEEAGFQAAFVQDNHVRSTTRGIQRG 60
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q+PP+AQ KL+RC+ G IFD+AVDIR+ SPT+G WV E+SA N Q+ +P GFAHG
Sbjct: 61 LHYQKPPHAQDKLLRCVVGSIFDVAVDIRKGSPTFGHWVGAELSAENRQQLLVPKGFAHG 120
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQ 174
++TL EV+YKVTD+Y+ + + GV W D +I I WP+ L+ I + +++D P L +
Sbjct: 121 YVTLSDACEVLYKVTDYYAPQAEGGVRWSDPAIGIEWPIPLNEI--TANDRDNAAPLLAE 178
Query: 175 IDSPFEY 181
I++PF Y
Sbjct: 179 IETPFAY 185
>gi|295691457|ref|YP_003595150.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caulobacter segnis ATCC
21756]
gi|295433360|gb|ADG12532.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caulobacter segnis ATCC
21756]
Length = 187
Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/187 (46%), Positives = 122/187 (65%), Gaps = 6/187 (3%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M I P+ I + + D RGWFS+T+ L+E G + FVQDNH S G RG
Sbjct: 1 MKITPLAIPEVLLITPARHGDERGWFSETFRQSALEEAGFKAAFVQDNHVRSTTRGIQRG 60
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q+PP+AQ KL+RC+ G IFD+AVDIR+ SPTYG WV E+SA N Q+ +P GFAHG
Sbjct: 61 LHYQKPPHAQDKLLRCVVGAIFDVAVDIRKGSPTYGQWVGAELSAENRQQLLVPKGFAHG 120
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
++TL EV+YKVTD+Y+ + + V W D ++ I WP+ + + + +++D P L +I
Sbjct: 121 YVTLTDACEVLYKVTDYYAPQAEGAVRWSDPAVGIDWPIPASEI-TANDRDNAAPLLAEI 179
Query: 176 DSPFEYD 182
DSPF Y+
Sbjct: 180 DSPFVYE 186
>gi|323135557|ref|ZP_08070640.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylocystis sp. ATCC 49242]
gi|322398648|gb|EFY01167.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylocystis sp. ATCC 49242]
Length = 183
Score = 189 bits (479), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 91/180 (50%), Positives = 125/180 (69%), Gaps = 3/180 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I ++++ +KF D RG+FS+TY++ ++ GL FVQDNHS S D GT+RGLHFQ
Sbjct: 5 LEIEGLKLVTPKKFGDERGFFSETYNASTWEKAGLHYKFVQDNHSLSRDVGTVRGLHFQT 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVR + GRI D+AVD+RR+SPT+G V++E+S N Q+ +P GFAHGF+TLE
Sbjct: 65 APFAQDKLVRVVQGRILDVAVDLRRSSPTFGRHVAVELSKENWRQLLVPIGFAHGFVTLE 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSV-SEKDQNLPFLNQIDSPF 179
+TEV+YKVT+FYS +HD G+AW D + + WP D +V S KDQ P L + F
Sbjct: 125 PDTEVLYKVTNFYSPQHDCGLAWDDPDLGVAWP--DVAKNAVLSAKDQKWPRLRDLPEVF 182
>gi|91976051|ref|YP_568710.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
BisB5]
gi|91682507|gb|ABE38809.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
BisB5]
Length = 185
Score = 188 bits (478), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 93/180 (51%), Positives = 120/180 (66%), Gaps = 5/180 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+++ + F D+RG F +TY+ K E G+ FVQDN SFS + GTIRGLHFQ PP
Sbjct: 9 IEAVKVIVPKSFADTRGTFCETYNHKRFVEHGISFEFVQDNQSFSAEAGTIRGLHFQSPP 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLVR + GRI D+AVD+RR+SPT+G WV+ E+SA NG Q+ +P GFAHGF TLE +
Sbjct: 69 AAQDKLVRVLRGRILDVAVDLRRSSPTFGKWVAEELSAENGKQLLVPVGFAHGFCTLEPD 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL--DTILPSVSEKDQNLPFLNQIDSPFE 180
T V+YKVT +YS HD GVAW D + I WP+ + +L S+KD P + FE
Sbjct: 129 THVLYKVTSYYSPAHDLGVAWDDPDLAIDWPIRSDEAVL---SDKDLRQPSFRSLAPVFE 185
>gi|294675734|ref|YP_003576349.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter capsulatus SB
1003]
gi|294474554|gb|ADE83942.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter capsulatus SB
1003]
Length = 187
Score = 188 bits (477), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/178 (50%), Positives = 117/178 (65%), Gaps = 1/178 (0%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+++ R+F D RG+FS++YS+K L E G+ VFVQDNHS S GTIRGLHFQ PP+AQ
Sbjct: 11 VKLITPRRFGDHRGFFSESYSAKALAEHGIDTVFVQDNHSLSMTVGTIRGLHFQNPPHAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVRC G +FD+AVDIR+ SPTYG W E+S NG Q+ +P GFAHGF+T TE+
Sbjct: 71 DKLVRCGKGCLFDVAVDIRKGSPTYGQWFGAELSFENGRQLLVPKGFAHGFVTRAPETEI 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
IYK +D+Y E + + W D I I W + D + P +S KD + DS F + G
Sbjct: 131 IYKCSDYYHPETEGALIWNDPDIGIDWGMGD-LEPVLSAKDAVAGRIADFDSAFSWQG 187
>gi|153010045|ref|YP_001371260.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ochrobactrum anthropi ATCC
49188]
gi|151561933|gb|ABS15431.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ochrobactrum anthropi ATCC
49188]
Length = 183
Score = 187 bits (475), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 119/172 (69%), Gaps = 1/172 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ ++ V + RKF D RG+FS+TY++K E G+ FVQDNHS+S G +RGLH+Q
Sbjct: 6 LGLDGVFEVSPRKFGDDRGFFSETYNAKSFAEAGIDLTFVQDNHSYSAAKGVVRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVR G I D+AVDIR++SPT+G WV+LE+SA QI +P GFAHGFMTL
Sbjct: 66 LPFAQDKLVRVTRGAILDVAVDIRKSSPTFGKWVALEVSAEKWNQILVPKGFAHGFMTLV 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
NTEVIYKVTD+YS EHD + + D +I I WP+ + + +S+KD P L
Sbjct: 126 ENTEVIYKVTDYYSPEHDRSIRFDDSAIGIDWPIASSGV-QLSDKDSKAPLL 176
>gi|32456001|ref|NP_862003.1| rb128 [Ruegeria sp. PR1b]
gi|22726353|gb|AAN05149.1| RB128 [Ruegeria sp. PR1b]
Length = 184
Score = 187 bits (474), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 93/176 (52%), Positives = 120/176 (68%), Gaps = 4/176 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+IL ++F D+RG+FS++++ + + GL FVQDNHS S + GTIRGLHFQ PP+AQ
Sbjct: 11 VKILTPQRFGDARGFFSESWNRQRMAAAGLDLDFVQDNHSMSAEVGTIRGLHFQAPPHAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVRC G +FD+AVDIR+ SPTYG WV +E+SA NG QI +P GF HGF+T TEV
Sbjct: 71 DKLVRCGQGALFDVAVDIRKGSPTYGEWVGVELSAENGKQILVPKGFLHGFITRAPMTEV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
IYK TD+Y+ + D GV W ID W T P +S KD P L ++DSPF +
Sbjct: 131 IYKCTDYYAPDCDGGVRWDSCGID--WGFDGT--PVLSGKDAVAPILAELDSPFTW 182
>gi|307303497|ref|ZP_07583251.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium meliloti
BL225C]
gi|306902888|gb|EFN33480.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium meliloti
BL225C]
Length = 187
Score = 187 bits (474), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 85/163 (52%), Positives = 114/163 (69%), Gaps = 1/163 (0%)
Query: 12 RKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
R+ D RG+FS+TY+++ L G+ +FVQDNHS+S GT+RGLH+Q PP AQAKLVR
Sbjct: 18 RRLGDERGFFSETYNAETLAAHGVAAIFVQDNHSYSAAAGTLRGLHYQLPPKAQAKLVRV 77
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
+ GR+FD+ VDIR+ SPT+ WV+LE+SA QI +P GFAHG +TLE TEV+YKVT+
Sbjct: 78 VRGRVFDVVVDIRKGSPTFAKWVALELSAEKWNQILVPVGFAHGLVTLEPETEVLYKVTE 137
Query: 132 FYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
YS EH+ + + D I I WP L +S KD+N P L++
Sbjct: 138 HYSAEHERSIRYDDPEIGIGWPAATDRL-QLSAKDRNAPLLHE 179
>gi|300022034|ref|YP_003754645.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hyphomicrobium denitrificans
ATCC 51888]
gi|299523855|gb|ADJ22324.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hyphomicrobium denitrificans
ATCC 51888]
Length = 183
Score = 186 bits (473), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/170 (52%), Positives = 119/170 (70%), Gaps = 1/170 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I ++++ +FED RG+FS+TYS K LKE G+ FVQDN S S GTIRGLHFQ+
Sbjct: 6 LEIPGLKLIVPPRFEDERGFFSETYSEKALKEAGIPAPFVQDNFSLSARKGTIRGLHFQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQAKLVR GR+ D+AVDIR +SPTYG V++E+S N Q+YIP GFAHGF TLE
Sbjct: 66 APYAQAKLVRVNRGRVLDVAVDIRSSSPTYGKHVAIELSRENWAQLYIPAGFAHGFCTLE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
+TEV YK + Y+ E + G+ W D ++ I WP+ + + +VS+KD LP
Sbjct: 126 DDTEVAYKTSAPYAPEAEGGILWSDPTLAIAWPVAPSDV-TVSDKDARLP 174
>gi|239831405|ref|ZP_04679734.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ochrobactrum intermedium LMG
3301]
gi|239823672|gb|EEQ95240.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ochrobactrum intermedium LMG
3301]
Length = 183
Score = 186 bits (473), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/168 (52%), Positives = 116/168 (69%), Gaps = 1/168 (0%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKL 68
+ RKF D RG+FS+TY++K E G+ FVQDNHS+S G +RGLH+Q PP+AQ KL
Sbjct: 14 ISPRKFGDDRGFFSETYNAKSFAEAGIDLTFVQDNHSYSAARGVVRGLHYQLPPFAQDKL 73
Query: 69 VRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128
V G I D+AVDIR+ SPT+G WV+LE+SA QI +P GFAHGFMTL +TEVIYK
Sbjct: 74 VHVTRGAILDVAVDIRKGSPTFGKWVALEVSAEKWNQILVPKGFAHGFMTLVEHTEVIYK 133
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
VT++YS EHD + + D +I I WP+ + + +S+KDQ P L D
Sbjct: 134 VTNYYSPEHDRSIRFDDPAIGIDWPIAPSGV-QLSDKDQKAPMLADAD 180
>gi|254295500|ref|YP_003061522.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hirschia baltica ATCC 49814]
gi|254044031|gb|ACT60825.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hirschia baltica ATCC 49814]
Length = 188
Score = 186 bits (473), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/181 (49%), Positives = 120/181 (66%), Gaps = 1/181 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ ++ V+ + +F D+RG+FS+TYS + + GL +VQDNHS S + +RGLHFQ
Sbjct: 6 LGLDGVKEITPARFGDARGFFSETYSEQRFSDAGLPTGWVQDNHSLSAEAFVLRGLHFQT 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVR + G IFD+AVDIR+NSP YG WV + ++A G QI +P GFAHGF+TL
Sbjct: 66 DPFAQDKLVRVLKGEIFDVAVDIRKNSPDYGKWVGITLTAEKGNQILVPKGFAHGFLTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
N EV YKVT Y+ E+D G+ W D +I I WP L+ P +S KD P L +D+ FE
Sbjct: 126 PNVEVAYKVTSGYAPENDRGIIWNDPAIGIDWP-LNGHEPQLSGKDAVAPLLADVDNNFE 184
Query: 181 Y 181
Y
Sbjct: 185 Y 185
>gi|163740057|ref|ZP_02147461.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Phaeobacter gallaeciensis
BS107]
gi|161386688|gb|EDQ11053.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Phaeobacter gallaeciensis
BS107]
Length = 184
Score = 186 bits (473), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/182 (50%), Positives = 119/182 (65%), Gaps = 4/182 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V+IL +F D+RG+F ++++ + E GL FVQDNHS S + GT+RGLHFQ P
Sbjct: 7 DLPGVKILTPARFGDARGFFCESWNKARMAEAGLDFDFVQDNHSLSMEVGTLRGLHFQAP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQAKLVRC G +FD+AVDIR+ SPTYG W +E+SA NG Q+ IP GF HGF+T
Sbjct: 67 PHAQAKLVRCGQGALFDVAVDIRKGSPTYGRWTGVELSAANGRQLLIPAGFLHGFITCSP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
TEV+YK +Y+ + D GVAW ID W T P +SEKD P DSPF +
Sbjct: 127 GTEVLYKCDAYYAPDCDGGVAWDSCGID--WGFDGT--PVLSEKDARAPRFEDFDSPFVW 182
Query: 182 DG 183
+G
Sbjct: 183 EG 184
>gi|163743492|ref|ZP_02150870.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Phaeobacter gallaeciensis
2.10]
gi|161383195|gb|EDQ07586.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Phaeobacter gallaeciensis
2.10]
Length = 184
Score = 186 bits (473), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 118/178 (66%), Gaps = 4/178 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+IL +F D+RG+F ++++ + E GL FVQDNHS S + GT+RGLHFQ PP+AQ
Sbjct: 11 VKILTPARFGDARGFFCESWNKARMAEAGLDFDFVQDNHSLSMEVGTLRGLHFQAPPHAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKLVRC G +FD+AVDIR+ SPTYG W +E+SA NG Q+ IP GF HGF+T TEV
Sbjct: 71 AKLVRCGQGALFDVAVDIRKGSPTYGRWTGVELSAANGRQLLIPAGFLHGFITRSPGTEV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
+YK +Y+ + D GVAW ID W T P +SEKD P +DSPF ++G
Sbjct: 131 LYKCDAYYAPDCDGGVAWDSCGID--WGFDGT--PVLSEKDAAAPRFEDLDSPFVWEG 184
>gi|115345656|ref|YP_771837.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseobacter denitrificans OCh
114]
gi|115292977|gb|ABI93429.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseobacter denitrificans OCh
114]
Length = 198
Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/179 (50%), Positives = 121/179 (67%), Gaps = 1/179 (0%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +L ++F D+RG+FS+++S++ + GL +VQDNHS S GT+RGLHFQ PP+AQ
Sbjct: 20 VFVLTPKRFGDARGFFSESWSAREMAAQGLDFTWVQDNHSLSMQTGTVRGLHFQSPPHAQ 79
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKLVRC G FD+AVDIRR SPTYG WV E+S NG Q+ +PTGF HGF T + TE+
Sbjct: 80 AKLVRCGRGAFFDVAVDIRRGSPTYGQWVGAELSYENGKQMLVPTGFLHGFATRQPETEI 139
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGL 184
IYK +D+Y+ E D V + +I I W L D + P +S+KD L DSPF ++G+
Sbjct: 140 IYKCSDYYAPECDGAVRFDCPTIGIDWGLGD-LEPVLSDKDAAAQGLADFDSPFVWEGV 197
>gi|182680403|ref|YP_001834549.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182636286|gb|ACB97060.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 191
Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/182 (48%), Positives = 120/182 (65%), Gaps = 1/182 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +++ +KF D+RG+F++TY+++ E G+ VFVQDN S S + GTIRGLHFQ
Sbjct: 8 LAIPDVLLIRPKKFGDARGYFAETYNARAYCEAGIDCVFVQDNQSLSVEKGTIRGLHFQV 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP QAKLVR + G I D+AVD+RR SP YG W ++A G Q+++P GFAHGF TL
Sbjct: 68 PPEPQAKLVRVLRGAILDVAVDLRRGSPHYGQWCGATLTAEEGEQLFVPRGFAHGFCTLM 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
TEV YKV FY+ D+G+ + D I+I WP LD +S+KD LPFL SPF
Sbjct: 128 PETEVAYKVDGFYAPGCDAGLRYDDPDINIPWP-LDGKAAMISDKDGKLPFLRDFKSPFT 186
Query: 181 YD 182
++
Sbjct: 187 FE 188
>gi|307318652|ref|ZP_07598085.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium meliloti AK83]
gi|306895679|gb|EFN26432.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium meliloti AK83]
Length = 187
Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ ++ V + R+ D RG+FS+TY+++ L G+ +FVQDNHS+S GT+RGLH+Q
Sbjct: 7 LGLDGVLEIVPRRLGDERGFFSETYNAETLAAHGVAAIFVQDNHSYSAAAGTLRGLHYQL 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP AQAKLVR + GR+FD+ VDIR+ SPT+ WV+LE+SA QI +P GFAHG +TLE
Sbjct: 67 PPKAQAKLVRVVRGRVFDVVVDIRKGSPTFAKWVALELSAEKWNQILVPVGFAHGLVTLE 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
TEV+YKV++ YS EH+ + + D I I WP L +S KD+N P L++
Sbjct: 127 PETEVLYKVSEHYSAEHERSIRYDDPEIGIGWPAATDRL-QLSAKDRNAPLLHE 179
>gi|310817081|ref|YP_003965045.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ketogulonicigenium vulgare
Y25]
gi|308755816|gb|ADO43745.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ketogulonicigenium vulgare
Y25]
Length = 183
Score = 184 bits (468), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 92/178 (51%), Positives = 121/178 (67%), Gaps = 4/178 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I+ + D+RG+FS++++ + + + GL FVQDNHS S GT+RGLHFQ PP+AQ
Sbjct: 10 VMIVTPARHGDARGFFSESWNRQRMADAGLVYDFVQDNHSLSMRVGTLRGLHFQSPPHAQ 69
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKLVRC GR+FD+AVDIR+ SPTYG WV +E+S NG Q+ IP GF HGF+TLE TEV
Sbjct: 70 AKLVRCGRGRLFDVAVDIRKGSPTYGKWVGVELSFENGRQLLIPEGFLHGFVTLEPETEV 129
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
+YK TD+Y+ + D V W S I WPL P +S+KD L+ DSPF++ G
Sbjct: 130 VYKCTDYYAPDCDGAVLWD--SCGIEWPLEGE--PLLSDKDLRAVPLSDFDSPFDFKG 183
>gi|86748688|ref|YP_485184.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
HaA2]
gi|86571716|gb|ABD06273.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
HaA2]
Length = 185
Score = 184 bits (468), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 93/178 (52%), Positives = 116/178 (65%), Gaps = 1/178 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+I+ + F DSRG F +TY+ + E G+ FVQDN S S GTIRGLHFQ P
Sbjct: 9 IEAVKIIVPKGFADSRGVFCETYNHRRFVEYGVSFDFVQDNQSSSARAGTIRGLHFQSHP 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLVR + GRI D+AVD+RR SPTYG WV+ E+SA+NG Q+ +P GFAHGF TLE
Sbjct: 69 AAQDKLVRVLRGRILDVAVDLRRTSPTYGRWVAEELSADNGKQLLVPVGFAHGFCTLEPE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
T V+YKVT +Y+ HD GVAW D + I WP + +SEKD LP + + FE
Sbjct: 129 TLVLYKVTGYYAPAHDLGVAWNDPDLAIDWP-VSADQAVLSEKDMQLPSFRSLPAYFE 185
>gi|89056335|ref|YP_511786.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Jannaschia sp. CCS1]
gi|88865884|gb|ABD56761.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Jannaschia sp. CCS1]
Length = 215
Score = 184 bits (467), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 87/178 (48%), Positives = 117/178 (65%), Gaps = 2/178 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
++ +F D+RG+F++TYS+ L + G+ FVQDNHS S D GT+RGLHFQ PP+AQ K
Sbjct: 40 VITPPRFGDARGFFAETYSAAKLADHGIMTQFVQDNHSLSEDVGTVRGLHFQGPPHAQDK 99
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVRC G +FD+ VDIR+ SPT+G W +E++ NG Q+ +P GFAHGF+T TE+IY
Sbjct: 100 LVRCGRGCLFDVVVDIRKGSPTFGQWFGIELTFENGKQLLVPAGFAHGFVTRAPGTEIIY 159
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLP 185
K +DFY+ E + + W D I I W L D P +S KD L +DSPF Y+ P
Sbjct: 160 KCSDFYAPETEGAIIWNDPKIGIDWRLEDD--PVLSGKDAVAGTLADLDSPFIYEAKP 215
>gi|150376856|ref|YP_001313452.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium medicae WSM419]
gi|150031403|gb|ABR63519.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium medicae WSM419]
Length = 187
Score = 184 bits (467), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 85/163 (52%), Positives = 116/163 (71%), Gaps = 1/163 (0%)
Query: 12 RKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
RKF D RG+FS+T++++ L G++ FVQDNHS+S GT+RGLH+Q PP AQAKLVR
Sbjct: 18 RKFGDERGFFSETFNAETLAAQGVELSFVQDNHSYSALAGTLRGLHYQLPPKAQAKLVRV 77
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
+ GR+FD+ VDIR+ SP++ W+ LE+SA QI +P GFAHGF+TLE TEV+YKVT+
Sbjct: 78 VRGRVFDVVVDIRKGSPSFAKWLGLELSAERWNQILVPAGFAHGFVTLEPETEVLYKVTE 137
Query: 132 FYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
YS EH+ + + D +I I WP+ L +S KD+N LN+
Sbjct: 138 HYSAEHERSIRFDDPAIGIGWPVAADRL-QLSAKDRNAALLNE 179
>gi|169351599|ref|ZP_02868537.1| hypothetical protein CLOSPI_02379 [Clostridium spiroforme DSM 1552]
gi|169291821|gb|EDS73954.1| hypothetical protein CLOSPI_02379 [Clostridium spiroforme DSM 1552]
Length = 191
Score = 184 bits (467), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 91/182 (50%), Positives = 124/182 (68%), Gaps = 1/182 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++T F D RG+F++TYS ++LG+ FVQDN SFS GT+RGLH+Q PP
Sbjct: 8 IPGVLIIETDVFGDHRGYFTETYSKPKYEKLGITVDFVQDNMSFSGQKGTLRGLHWQNPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLV C G++ D+AVDIR+ SPTYG WVS+E+SA N Q +IP GFAHGF+TL +
Sbjct: 68 YAQSKLVSCTKGKVIDVAVDIRKGSPTYGKWVSVELSAENHRQFFIPQGFAHGFLTLTDD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW-PLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
E YKV + Y+ E + G+ + D + ++ W LLD I P +SEKD P L + ++ F Y
Sbjct: 128 VEFRYKVDNVYNKESEGGMRYDDPTCNVDWGKLLDGIEPVLSEKDMTGPTLEESNNQFVY 187
Query: 182 DG 183
+G
Sbjct: 188 EG 189
>gi|229160276|ref|ZP_04288275.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus R309803]
gi|228623237|gb|EEK80064.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus R309803]
Length = 181
Score = 184 bits (466), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 125/178 (70%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N V++L+ R FED RG+F+++Y+ K+L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDVKLLEPRLFEDERGFFTESYNKKVLETLGIAYSFVQDNVSYSTRAGTIRGLHFQKK 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N ++ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFRQWKGYILSADNHRELLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS EHDSG+ W+DK + I WP+ + IL S+KDQ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSAEHDSGLLWEDKELAIPWPVTNPIL---SDKDQVLPLLQEYEDSF 181
>gi|229078512|ref|ZP_04211072.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock4-2]
gi|228704828|gb|EEL57254.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock4-2]
Length = 181
Score = 184 bits (466), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 87/178 (48%), Positives = 123/178 (69%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N V++L+ R F D RG+FS++Y+ ++L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDVKLLEPRLFGDERGFFSESYNKQVLETLGITYSFVQDNVSYSAKAGTIRGLHFQKK 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R+ SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKKSPTFKQWKGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS EHDSG+ W+DK + I WP+ D IL S+KDQ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSAEHDSGLLWEDKDLAIPWPVTDPIL---SDKDQILPLLEEYEDSF 181
>gi|167755094|ref|ZP_02427221.1| hypothetical protein CLORAM_00598 [Clostridium ramosum DSM 1402]
gi|237733479|ref|ZP_04563960.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mollicutes bacterium D7]
gi|167705144|gb|EDS19723.1| hypothetical protein CLORAM_00598 [Clostridium ramosum DSM 1402]
gi|229383514|gb|EEO33605.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coprobacillus sp. D7]
Length = 191
Score = 184 bits (466), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 87/169 (51%), Positives = 117/169 (69%), Gaps = 1/169 (0%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F +TYS+ ELG+ +VFVQDN SF+ GT+RGLHFQ P AQAKLV C G
Sbjct: 21 DHRGYFMETYSTSNFHELGIDNVFVQDNMSFTAKKGTLRGLHFQNDPMAQAKLVSCTKGT 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+ D+AVDIR+ SPTY WV++E+S N +IP GFAHGF+TL N E YKV + YS
Sbjct: 81 VIDVAVDIRKGSPTYKQWVAVELSEENKKMFFIPRGFAHGFLTLTDNVEFRYKVDNLYSK 140
Query: 136 EHDSGVAWQDKSIDITW-PLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
EHD G+ + D S+++ W LL+ I P +S+KD+N P L++ D F+++G
Sbjct: 141 EHDRGIRYDDPSVNVDWGGLLNGIEPILSDKDKNGPTLDESDCNFKFEG 189
>gi|16264649|ref|NP_437441.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase protein
[Sinorhizobium meliloti 1021]
gi|1890602|emb|CAB01950.1| ExpA8 [Sinorhizobium meliloti]
gi|15140787|emb|CAC49301.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase protein WgaH
(formerly ExpA8) [Sinorhizobium meliloti 1021]
Length = 187
Score = 184 bits (466), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ ++ V + R+ D RG+FS+TY+++ L G+ +FVQDNHS+S GT+RGLH+Q
Sbjct: 7 LGLDGVLEIVPRRLGDERGFFSETYNAETLAAHGVAAIFVQDNHSYSAAAGTLRGLHYQL 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP AQAKLVR + GR+FD+ VDIR+ SPT+ WV+LE+SA QI +P GFAHG +TL+
Sbjct: 67 PPKAQAKLVRVVRGRVFDVVVDIRKGSPTFAKWVALELSAEKWNQILVPVGFAHGLVTLD 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
TEV+YKV++ YS EH+ + + D I I WP L +S KD+N P L++
Sbjct: 127 PETEVLYKVSEHYSAEHERSIRYDDPEIGIGWPAATDRL-QLSAKDRNAPLLHE 179
>gi|328544172|ref|YP_004304281.1| glucose-1-phosphate thymidylyltransferase [polymorphum gilvum
SL003B-26A1]
gi|326413915|gb|ADZ70978.1| Glucose-1-phosphate thymidylyltransferase [Polymorphum gilvum
SL003B-26A1]
Length = 187
Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 126/181 (69%), Gaps = 3/181 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +++ +KF D RG+FS+TY+++ + G+ FVQDNHS+S + GT+RGLH+Q
Sbjct: 9 LAIPDVLVIEPKKFGDHRGFFSETYNARAFADAGIDLRFVQDNHSYSAEPGTLRGLHYQG 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVR + GRI D+AVD+RR+SPT+G WVS EISA QI +P GFAH +TLE
Sbjct: 69 APHAQDKLVRVLRGRILDVAVDLRRSSPTFGKWVSAEISAEAWNQILVPAGFAHAILTLE 128
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL-DTILPSVSEKDQNLPFLNQIDSPF 179
+TE++YKV+++Y+ HD G+ W D + I WP+ D ++ +S+KD PFL + F
Sbjct: 129 PHTELLYKVSNYYAPSHDFGIRWNDPELAIDWPISEDKVI--LSDKDAKQPFLKDVADLF 186
Query: 180 E 180
+
Sbjct: 187 D 187
>gi|218887778|ref|YP_002437099.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758732|gb|ACL09631.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 196
Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 113/177 (63%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKL 68
L+ R F D RG+F +TY L LG+ FVQDNH+ S G +RGLHFQ PP QAKL
Sbjct: 14 LEPRVFRDERGFFLETYRRDLFAALGVPAGFVQDNHARSEQPGVLRGLHFQLPPATQAKL 73
Query: 69 VRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128
V G +FD+AVD+R SP YG W E+S N ++++P GFAHG+MTLE +E YK
Sbjct: 74 VWVTRGSVFDVAVDLRVGSPAYGKWYGCELSERNFARLFVPRGFAHGYMTLEPGSEFQYK 133
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLP 185
V +YS E D+G+AW D + ITWP + LP +S+KD+ LP L + SPF ++ P
Sbjct: 134 VDAYYSPERDAGIAWDDPDLGITWPDIAPALPILSDKDRRLPRLRDLQSPFTFEPAP 190
>gi|238927849|ref|ZP_04659609.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas flueggei ATCC
43531]
gi|238884294|gb|EEQ47932.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas flueggei ATCC
43531]
Length = 186
Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/169 (51%), Positives = 114/169 (67%), Gaps = 3/169 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I++ + F D+RGWF +++S K +++ G+ FVQDNHSFS GT+RGLH+Q P AQ
Sbjct: 11 VMIIEPQVFGDARGWFMESWSEKKMEDAGIHAAFVQDNHSFSAQKGTLRGLHYQLNPMAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKL+R G IFD+AVDIRRNSPTY WV E+SA N Q++IP GFAHGF+TL + EV
Sbjct: 71 AKLLRASRGAIFDVAVDIRRNSPTYAQWVGAELSAENYRQLFIPRGFAHGFITLTDDVEV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
YK + Y+ + D + W D +I I WPL T+L SEKD P L +
Sbjct: 131 QYKADNLYASDCDGNIRWDDPTIGIAWPLAPTVL---SEKDAAAPLLAE 176
>gi|241203189|ref|YP_002974285.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240857079|gb|ACS54746.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 188
Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 117/181 (64%), Gaps = 2/181 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V+ + +F D RG+FS+ + + FVQDN S S GT+RGLHFQ
Sbjct: 9 LEIGDVKKVTPARFGDPRGYFSEVFKDFWFRTNVADVSFVQDNESLSAQPGTVRGLHFQS 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVRC+ G + D+AVDIR SPTYG WVS E+S NG Q+++P GFAHGF+TLE
Sbjct: 69 PPFAQGKLVRCLRGALLDVAVDIRHGSPTYGKWVSAELSPENGSQLWVPAGFAHGFVTLE 128
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T + YKVT YS EHD GV W D I I WP +D + +S+KD P L+++ + F+
Sbjct: 129 PDTIISYKVTALYSAEHDCGVRWNDAEIGIEWPQMDGYV--LSDKDNKQPRLSELPTYFQ 186
Query: 181 Y 181
+
Sbjct: 187 F 187
>gi|228906952|ref|ZP_04070819.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis IBL
200]
gi|228852700|gb|EEM97487.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis IBL
200]
Length = 181
Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+FS++Y+ ++L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDERGFFSESYNKQVLETLGITYTFVQDNVSYSAKAGTIRGLHFQKK 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R+ SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKKSPTFKQWKGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS EHDSG+ W+DK + I WP+ D IL S+KDQ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSAEHDSGLLWEDKDLAIPWPVTDPIL---SDKDQILPLLEEYEDSF 181
>gi|295397282|ref|ZP_06807377.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aerococcus viridans ATCC
11563]
gi|294974488|gb|EFG50220.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aerococcus viridans ATCC
11563]
Length = 183
Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/180 (48%), Positives = 120/180 (66%), Gaps = 3/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V I++ + F D RGWF++TYS + KE G+ F+QDNHS S GT+RGLHFQ
Sbjct: 7 DIEDVIIIEPKVFGDHRGWFTETYSKEKFKEFGIDIDFIQDNHSLSAQKGTLRGLHFQLN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVRC G+I D+AVDIR SPTY WV++E++ N Q+ +P GFAHGF+TL
Sbjct: 67 PKAQTKLVRCTKGKILDVAVDIREGSPTYKKWVAVELTEENKKQLLVPKGFAHGFITLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N EV YKV ++YS E+D + + D I++ W + IL SEKD + P L++ D+ F+Y
Sbjct: 127 NVEVQYKVDEYYSPENDRSIRFDDPEINVDWGIDSPIL---SEKDLSAPMLSESDANFKY 183
>gi|158423458|ref|YP_001524750.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Azorhizobium caulinodans ORS
571]
gi|158330347|dbj|BAF87832.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Azorhizobium caulinodans ORS
571]
Length = 185
Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/181 (48%), Positives = 115/181 (63%), Gaps = 3/181 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V ++ +F D RG+FS+TY L GL VF+QDN S S G IRGLHFQ
Sbjct: 7 LDIPEVVLITPPRFADPRGYFSETYKKSALDAAGLNHVFIQDNESLSTVPGIIRGLHFQA 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP++QAKLVR ++G I+D+AVDIR+ SPTYG WV ++A G QI IP GFAH F TL
Sbjct: 67 PPFSQAKLVRVVSGAIYDVAVDIRKGSPTYGKWVGATLTAEKGEQILIPHGFAHAFCTLT 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ V+YKV YS + G+ W D + I WP+ + + VSEKD+ LP +DSPF
Sbjct: 127 PDVRVLYKVDGAYSKASEGGIIWNDPDLAIDWPVSNAL---VSEKDEILPRFKDLDSPFI 183
Query: 181 Y 181
Y
Sbjct: 184 Y 184
>gi|295100096|emb|CBK89185.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium cylindroides
T2-87]
Length = 189
Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/182 (49%), Positives = 124/182 (68%), Gaps = 1/182 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I+ T F D RG+F++TYS ++G+ FVQDN SFS GT+RGLH+Q PP
Sbjct: 8 IPGVLIIDTDVFGDHRGYFTETYSKPKYGKMGITVDFVQDNMSFSSQKGTLRGLHWQNPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLV C G++ D+AVDIR+ SPTYG WVS+E+SA N Q +IP GFAHGF+TL +
Sbjct: 68 YAQSKLVSCTKGKVIDVAVDIRKGSPTYGQWVSVELSAENHRQFFIPQGFAHGFLTLTDD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW-PLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
E YKV + Y+ E + G+ + D ++++ W LL+ I P +SEKD+ P L + D+ F Y
Sbjct: 128 VEFRYKVDNVYNKESEGGMRYDDPTVNVDWGQLLNGIEPVLSEKDKIGPTLEESDNQFVY 187
Query: 182 DG 183
+G
Sbjct: 188 EG 189
>gi|192288554|ref|YP_001989159.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
TIE-1]
gi|192282303|gb|ACE98683.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
TIE-1]
Length = 185
Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/179 (50%), Positives = 120/179 (67%), Gaps = 3/179 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+I+ R F DSRG FS+TY+ + + G+ FVQDN S S GT+RGLHFQ P
Sbjct: 9 IEAVKIITPRAFADSRGTFSETYNRQRFVDHGVALEFVQDNQSISAAVGTVRGLHFQSAP 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVR GRI D+AVD+RR+SPTYG WV+ E+SA +G Q+ IP GFAHGF TLE +
Sbjct: 69 FAQDKLVRVAKGRILDVAVDLRRSSPTYGQWVAEELSAEDGKQLLIPIGFAHGFCTLEPD 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFE 180
T + YKVT++YS HD G+AW D + + WP+ D + +S+KD LP + + FE
Sbjct: 129 TVLAYKVTNYYSPPHDLGIAWNDPDLAVRWPVTADQAV--LSDKDLKLPPFASLPNYFE 185
>gi|163939116|ref|YP_001644000.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus weihenstephanensis
KBAB4]
gi|163861313|gb|ABY42372.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus weihenstephanensis
KBAB4]
Length = 181
Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/179 (46%), Positives = 125/179 (69%), Gaps = 3/179 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+N ++L+ R FED RG+F+++Y+ K+L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 6 INFTDAKLLEPRLFEDERGFFTESYNKKMLESLGITHSFVQDNVSYSAHSGTIRGLHFQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 66 NPKAQTKLIQVMQGAIYDVIVDLRKDSPTFKKWRGYILSADNHRQLLVPKGFAHGFCTLV 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS +HDSG+ W+DK + I WP+ + IL S+KD+ LP L + + F
Sbjct: 126 PHTIVMYKVDEYYSADHDSGLLWEDKELSIPWPVTNPIL---SDKDRILPLLQEYEDSF 181
>gi|30019366|ref|NP_830997.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus ATCC 14579]
gi|228951698|ref|ZP_04113800.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228957591|ref|ZP_04119342.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|229043064|ref|ZP_04190794.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH676]
gi|229068875|ref|ZP_04202169.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus F65185]
gi|229126627|ref|ZP_04255639.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus BDRD-Cer4]
gi|229143928|ref|ZP_04272345.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus BDRD-ST24]
gi|296501909|ref|YP_003663609.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
BMB171]
gi|29894909|gb|AAP08198.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus ATCC 14579]
gi|228639491|gb|EEK95904.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus BDRD-ST24]
gi|228656567|gb|EEL12393.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus BDRD-Cer4]
gi|228714159|gb|EEL66040.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus F65185]
gi|228726305|gb|EEL77532.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH676]
gi|228802090|gb|EEM48956.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228807983|gb|EEM54500.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|296322961|gb|ADH05889.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
BMB171]
Length = 181
Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+FS++Y+ ++L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDERGFFSESYNKQVLETLGITYSFVQDNVSYSAKAGTIRGLHFQKK 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R+ SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKKSPTFKQWKGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS EHDSG+ W+DK + I WP+ D IL S+KDQ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSAEHDSGLLWEDKDLAIPWPVTDPIL---SDKDQILPLLEEYEDSF 181
>gi|83582768|ref|YP_425074.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodospirillum rubrum ATCC
11170]
gi|83578084|gb|ABC24634.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodospirillum rubrum ATCC
11170]
Length = 188
Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 120/181 (66%), Gaps = 1/181 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V+IL+ KF D RG+FS+TY+ L E+G+ F+QDNHSFS GT+RGLHFQ
Sbjct: 8 LDIAEVKILRPAKFGDDRGFFSETYNKVALAEVGITLEFIQDNHSFSAKAGTVRGLHFQT 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KL+R + G +FD+AVD+R SPTYG VS ISA QI IP GFAHG T+E
Sbjct: 68 PPFAQDKLIRVVRGALFDVAVDLRVGSPTYGQSVSAVISAAAWNQILIPAGFAHGLCTIE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+TEV+YKV+ YS +HD G+ W D ++ I WP+ +S+KD P L + + F
Sbjct: 128 PDTEVLYKVSAPYSPDHDKGLLWNDPALGIEWPVSPGAA-ILSDKDARQPVLADLPAYFT 186
Query: 181 Y 181
Y
Sbjct: 187 Y 187
>gi|160914760|ref|ZP_02076974.1| hypothetical protein EUBDOL_00767 [Eubacterium dolichum DSM 3991]
gi|158433300|gb|EDP11589.1| hypothetical protein EUBDOL_00767 [Eubacterium dolichum DSM 3991]
Length = 191
Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/180 (50%), Positives = 121/180 (67%), Gaps = 1/180 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++T F D RG+FS+TYS ELG+ FVQDN SFS GT+RGLH+Q PP
Sbjct: 8 IPGVLIIETDVFGDHRGYFSETYSKPKYAELGIDVEFVQDNMSFSAQKGTLRGLHWQNPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLV C G + D+AVDIR+ SPTYG WVS+E++A N Q +IP GFAHGF+T+ +
Sbjct: 68 YAQSKLVSCTKGAVIDVAVDIRKGSPTYGEWVSVELTAENHRQFFIPQGFAHGFLTISDD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW-PLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
E YKV + Y+ E + G+ + D S+++ W LL+ I P +SEKD + P L ++ F Y
Sbjct: 128 VEFRYKVDNVYNKESEGGMRYDDPSVNVDWGSLLNGIEPVLSEKDAHGPTLEDANNQFVY 187
>gi|99077996|ref|YP_611255.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruegeria sp. TM1040]
gi|99034939|gb|ABF61993.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruegeria sp. TM1040]
Length = 182
Score = 182 bits (461), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 91/180 (50%), Positives = 117/180 (65%), Gaps = 4/180 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V+IL +F D+RG+FS++++ K + E GL FVQDNHS S D GTIRGLHFQ P
Sbjct: 7 KLSGVKILTPARFGDARGFFSESWNRKRMAEHGLDLEFVQDNHSMSADVGTIRGLHFQAP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVRC G +FD+ VDIR SPTYG W+ +E+SA NG Q+ +P GF HGF+T
Sbjct: 67 PHAQDKLVRCGQGVLFDVVVDIRNGSPTYGEWIGVELSAENGRQLLVPKGFLHGFITRAP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
TE+IYK TD+Y+ E D GV W ID W P +SEKD P + SPF +
Sbjct: 127 MTEIIYKCTDYYAPECDGGVRWDSCGID--WGFDGQ--PILSEKDAAAPKFADLQSPFVF 182
>gi|288963203|ref|YP_003453482.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Azospirillum sp. B510]
gi|288915455|dbj|BAI76938.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Azospirillum sp. B510]
Length = 183
Score = 182 bits (461), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 120/175 (68%), Gaps = 1/175 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V+I++ +KF D RG+FS+TY+ K + GL+ FVQDN S S + GT+RGLHFQ
Sbjct: 6 LDIPDVKIIRPKKFGDHRGFFSETYNKKTFEAAGLRYDFVQDNQSLSAEVGTVRGLHFQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KL+R + G I D+AVDIR++SPT+G VS ISA QI +P GFAHGF TLE
Sbjct: 66 PPFAQDKLLRVVRGAILDVAVDIRKDSPTFGRHVSAVISAAEWNQILVPIGFAHGFCTLE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+TEVIYKVT++YS EHD G+ W D + I WP + +S KD+ P Q+
Sbjct: 126 PDTEVIYKVTNYYSPEHDRGLLWNDPELGIDWP-VSADKAQLSGKDRTHPTFAQL 179
>gi|159046643|ref|YP_001542312.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dinoroseobacter shibae DFL
12]
gi|157914402|gb|ABV95831.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dinoroseobacter shibae DFL
12]
Length = 184
Score = 182 bits (461), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/178 (50%), Positives = 116/178 (65%), Gaps = 4/178 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V++L +F D+RG+FS++YS ++L G+ FVQDNHS S GT+RGLHFQ PP+AQ
Sbjct: 11 VKLLTPARFGDARGFFSESYSRRVLAGHGITLDFVQDNHSLSAQVGTVRGLHFQAPPHAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVRC GR+FD+AVD+RR SPTYG W E+S NG Q+ +P GF HGF+T E +TE+
Sbjct: 71 DKLVRCGRGRLFDVAVDVRRGSPTYGQWFGAELSFENGKQLLVPAGFLHGFVTREPDTEI 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
+YK +D+Y+ E D V W ID W P +S KD L DSPF Y+G
Sbjct: 131 VYKCSDYYAPECDGAVHWDSCGID--WGFEGD--PVISAKDAAAVRLADFDSPFVYEG 184
>gi|304438711|ref|ZP_07398649.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304368360|gb|EFM22047.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 186
Score = 182 bits (461), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/179 (49%), Positives = 119/179 (66%), Gaps = 4/179 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I++ + F D+RGWF +++S+K +++ G+ FVQDNHSFS GT+RGLH+Q P AQ
Sbjct: 11 VVIIEPQVFGDARGWFMESWSAKKMEDAGIHVAFVQDNHSFSAQKGTLRGLHYQLNPMAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKL+R G IFD+AVDIRR SPTY WV +E+SA N Q++IP GFAHGF+TL N EV
Sbjct: 71 AKLLRASRGAIFDVAVDIRRGSPTYAQWVGVELSAENYRQLFIPRGFAHGFITLTDNVEV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS-PFEYDG 183
YK + Y+ + D + W D +I + WPL T+L SEKD P L + F Y+G
Sbjct: 131 QYKADNLYAPDCDGNIRWDDPAIGVAWPLTPTVL---SEKDAAAPLLAERSELNFVYEG 186
>gi|154253743|ref|YP_001414567.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Parvibaculum lavamentivorans
DS-1]
gi|154157693|gb|ABS64910.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Parvibaculum lavamentivorans
DS-1]
Length = 189
Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/182 (48%), Positives = 122/182 (67%), Gaps = 1/182 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V+++ + + D RG+F++TYS + E+G+ FVQDN S++ GTIRGLHFQRP
Sbjct: 8 SIPEVKVMTSSRAIDGRGFFAETYSRRDFIEIGITADFVQDNESWNSAAGTIRGLHFQRP 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQAKLVR ++G I D+AVDIR SPTY V+LE+ A + QI+IP GFAHGF TL
Sbjct: 68 DFAQAKLVRVLSGAILDVAVDIRVGSPTYAQHVALELDAADNKQIFIPRGFAHGFCTLAP 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
T V YKV +YS H+SG+ W D ++ I WP +D+ +SEKD +LP +SPF +
Sbjct: 128 ATHVTYKVDAYYSEAHESGLLWNDPNLAIKWP-VDSAAAILSEKDADLPGFAAFESPFMF 186
Query: 182 DG 183
+
Sbjct: 187 EA 188
>gi|39933195|ref|NP_945471.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Rhodopseudomonas palustris
CGA009]
gi|39652820|emb|CAE25562.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Rhodopseudomonas palustris
CGA009]
Length = 185
Score = 181 bits (460), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 91/179 (50%), Positives = 119/179 (66%), Gaps = 3/179 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+I+ R F DSRG F +TY+ + + G+ FVQDN S S GT+RGLHFQ P
Sbjct: 9 IEAVKIITPRAFADSRGSFVETYNRQRFVDHGVALEFVQDNQSISAAVGTVRGLHFQSAP 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVR GRI D+AVD+RR+SPTYG WV+ E+SA +G Q+ IP GFAHGF TLE +
Sbjct: 69 FAQDKLVRVAKGRILDVAVDLRRSSPTYGQWVAEELSAEDGKQLLIPIGFAHGFCTLEPD 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFE 180
T V YKVT++YS HD G+AW D + + WP+ D + +S+KD LP + + FE
Sbjct: 129 TVVAYKVTNYYSPPHDLGIAWNDPDLAVRWPVTADQAV--LSDKDLELPPFASLPNYFE 185
>gi|206968279|ref|ZP_03229235.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH1134]
gi|229177734|ref|ZP_04305108.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus 172560W]
gi|229189408|ref|ZP_04316425.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus ATCC 10876]
gi|206737199|gb|EDZ54346.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH1134]
gi|228593999|gb|EEK51801.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus ATCC 10876]
gi|228605698|gb|EEK63145.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus 172560W]
Length = 181
Score = 181 bits (459), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+FS++Y+ ++L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDDRGFFSESYNKQVLETLGITYSFVQDNVSYSAKAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R+ SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKKSPTFKQWKGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS EHDSG+ W+DK + I WP+ D IL S+KDQ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSAEHDSGLLWEDKDLAIPWPVTDPIL---SDKDQILPLLEEYEDSF 181
>gi|229056954|ref|ZP_04196349.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH603]
gi|228720343|gb|EEL71917.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH603]
Length = 181
Score = 181 bits (459), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 124/178 (69%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R FED RG+F+++Y+ K+L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFEDERGFFTESYNKKMLESLGITHSFVQDNVSYSAHSGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF T+
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFKKWRGYILSADNHRQLLVPKGFAHGFCTMVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS +HDSG+ W+DK + I WP+ + IL S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSADHDSGLLWEDKELSIPWPVTNPIL---SDKDRILPLLQEYEDSF 181
>gi|217978847|ref|YP_002362994.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylocella silvestris BL2]
gi|217504223|gb|ACK51632.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylocella silvestris BL2]
Length = 190
Score = 181 bits (459), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 89/181 (49%), Positives = 115/181 (63%), Gaps = 2/181 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +LK R+F D RG+F +TY+ + + G+ FVQDN SFS GTIRGLHFQ PP AQ
Sbjct: 11 VLVLKPRRFADQRGYFVETYNRRTFAKAGVDAQFVQDNQSFSAKAGTIRGLHFQLPPAAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKLVR + G IFD+AVD+R SPT+G W+ ++A G Q+ IP GFAH F TLE + EV
Sbjct: 71 AKLVRAVRGAIFDVAVDLRAGSPTFGRWIGETLTAGGGEQLLIPRGFAHAFCTLEDDVEV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD-GL 184
YKV DFY+ DSG+ W D + I WP ++ +S+KD L SPF ++ G
Sbjct: 131 AYKVDDFYAPTCDSGLIWNDPDLKIEWP-VEASAAVLSDKDAKLGRFADFVSPFRFEAGA 189
Query: 185 P 185
P
Sbjct: 190 P 190
>gi|41205691|gb|AAR99611.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geobacillus
stearothermophilus]
Length = 183
Score = 181 bits (459), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 115/174 (66%), Gaps = 3/174 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+L+ + F D RG+F ++Y+ K+ KELG FVQDNHS S + GT+RGLH+Q PYAQ K
Sbjct: 13 LLEPKVFGDHRGFFMESYNDKVFKELGFNYEFVQDNHSLSVEVGTLRGLHYQLEPYAQTK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR + G I+D+ VDIR+ SPTYG W ++ N Q+ +P GFAHGF T+ NTEVIY
Sbjct: 73 LVRVVRGAIYDVIVDIRKGSPTYGEWQGFILTEWNKRQLLVPKGFAHGFCTIVPNTEVIY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
KV ++YS EHD G+ W D + I WP T P +SEKD P L + ++ F Y
Sbjct: 133 KVDNYYSPEHDRGICWNDPDLKIDWP---THSPILSEKDSKHPRLAEAENNFTY 183
>gi|75759809|ref|ZP_00739886.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|218896252|ref|YP_002444663.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus G9842]
gi|228899900|ref|ZP_04064144.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis IBL
4222]
gi|228964266|ref|ZP_04125385.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|74492709|gb|EAO55848.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|218543340|gb|ACK95734.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus G9842]
gi|228795363|gb|EEM42851.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228859740|gb|EEN04156.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis IBL
4222]
Length = 181
Score = 181 bits (459), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+FS++Y+ ++L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 7 NFIDAKLLEPRLFGDERGFFSESYNKQVLETLGITYSFVQDNVSYSAKAGTIRGLHFQKK 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R+ SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKKSPTFKQWKGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS EHDSG+ W+DK + I WP+ D IL S+KDQ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSAEHDSGLLWEDKDLAIPWPVTDPIL---SDKDQILPLLEEYEDSF 181
>gi|228920040|ref|ZP_04083389.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228839496|gb|EEM84788.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 181
Score = 181 bits (459), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+FS++Y+ ++L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDERGFFSESYNKQVLETLGITYSFVQDNVSYSVKAGTIRGLHFQKK 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R+ SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKKSPTFKQWKGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS EHDSG+ W+DK + I WP+ D IL S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSAEHDSGLLWEDKDLAIPWPVTDPIL---SDKDRILPLLEEYEDSF 181
>gi|241204008|ref|YP_002975104.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240857898|gb|ACS55565.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 192
Score = 181 bits (459), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 112/167 (67%), Gaps = 1/167 (0%)
Query: 13 KFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
+F D RG+FS+ + +E F+QDN S S GT+RGLHFQ PP+AQ KLVRC+
Sbjct: 18 RFGDHRGYFSEVFKDAWFRENVADVTFIQDNESLSAQTGTVRGLHFQIPPFAQGKLVRCL 77
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
AGRI DI VDIR SP++G W+S E+S NG+Q+++P GFAHGF TLE N+ + YKVT
Sbjct: 78 AGRIMDIVVDIREGSPSFGKWLSQELSPENGMQLWVPAGFAHGFATLEPNSVISYKVTAP 137
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
YS +HD G+AW D +I I WP + + +S+KD+ LP L + F
Sbjct: 138 YSPQHDRGIAWNDPAIGIRWPFYERDM-VLSDKDKTLPRLADLPGHF 183
>gi|295400933|ref|ZP_06810908.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geobacillus
thermoglucosidasius C56-YS93]
gi|294976935|gb|EFG52538.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geobacillus
thermoglucosidasius C56-YS93]
Length = 183
Score = 181 bits (459), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 116/174 (66%), Gaps = 3/174 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ + F D RG+F ++Y+ K+ KELG FVQDNHS S + GT+RGLH+Q PYAQ K
Sbjct: 13 LIEPKVFSDHRGFFMESYNDKVFKELGFNYEFVQDNHSLSVEVGTLRGLHYQLEPYAQTK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR I G ++D+ VDIR+ SPTYG W +S N Q+ +P GFAHGF T+ NTEV+Y
Sbjct: 73 LVRVIRGAVYDVIVDIRKGSPTYGKWQGFILSEWNKRQLLVPKGFAHGFCTIVPNTEVLY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
KV ++YS EHD G+ W D ++I WP T P +SEKD P L + ++ F Y
Sbjct: 133 KVDNYYSPEHDRGICWNDPDLNIDWP---TNSPILSEKDSKHPRLVEAENNFTY 183
>gi|84684395|ref|ZP_01012296.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Maritimibacter alkaliphilus
HTCC2654]
gi|84667374|gb|EAQ13843.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Rhodobacterales bacterium
HTCC2654]
Length = 188
Score = 181 bits (458), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 119/177 (67%), Gaps = 2/177 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V + ++ D+RG+F++T++ + L G+ FVQDNHS S GT+RGLH Q PP
Sbjct: 8 IPGVFVFTPERYGDARGFFAETWNRRQLSAAGVDIDFVQDNHSVSATAGTLRGLHMQTPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVRC GR+FD+AVDIR +SPT+ WV +E+SA NG Q+ +P GF HGF+T E +
Sbjct: 68 FAQDKLVRCGRGRLFDVAVDIRADSPTFRQWVGVELSAENGKQLLVPRGFLHGFVTREPD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
TEV+YK +++Y+ E D V + D I I W L D P +S+KD PFL +D+PF
Sbjct: 128 TEVVYKCSNYYAPECDRAVRFDDPDIGIDWGLTDA--PVLSDKDAKAPFLRDLDNPF 182
>gi|228938436|ref|ZP_04101045.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228971315|ref|ZP_04131942.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228977925|ref|ZP_04138306.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis Bt407]
gi|228781842|gb|EEM30039.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis Bt407]
gi|228788351|gb|EEM36303.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228821173|gb|EEM67189.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326938943|gb|AEA14839.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 181
Score = 181 bits (458), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+FS++Y+ ++L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDERGFFSESYNKQVLETLGITYSFVQDNVSYSAKAGTIRGLHFQKK 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R+ SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKKSPTFKQWKGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS +HDSG+ W+DK + I WP+ D IL S+KDQ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSAKHDSGLLWEDKDLAIPWPVTDPIL---SDKDQILPLLEEYEDSF 181
>gi|218674078|ref|ZP_03523747.1| dTDP-4-dehydrorhamnose 3,5-epimerase protein [Rhizobium etli GR56]
Length = 192
Score = 181 bits (458), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 114/169 (67%), Gaps = 1/169 (0%)
Query: 13 KFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
+F D RG+FS+ + +E FVQDN S S GT+RGLHFQ PP+AQ KLVRC+
Sbjct: 18 RFGDHRGYFSEVFKDAWFRENVADVTFVQDNESLSAQAGTVRGLHFQIPPFAQGKLVRCL 77
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
AGRI D+ VDIR SP++G W+S E+S + G Q++IP GFAHGF T+E N+ + YKVT
Sbjct: 78 AGRIMDVVVDIRVGSPSFGKWLSQELSPDTGKQLWIPPGFAHGFATIEPNSVISYKVTAP 137
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YS +HD G+AW D +I I WP +T + S S+KD+ LP L + + F Y
Sbjct: 138 YSPQHDRGIAWNDPAIGIRWPFDETDMVS-SDKDKTLPRLADLPNHFSY 185
>gi|218233453|ref|YP_002366001.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus B4264]
gi|229108779|ref|ZP_04238386.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock1-15]
gi|229149524|ref|ZP_04277756.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus m1550]
gi|218161410|gb|ACK61402.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus B4264]
gi|228633870|gb|EEK90467.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus m1550]
gi|228674670|gb|EEL29907.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock1-15]
Length = 181
Score = 181 bits (458), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 121/178 (67%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+FS++Y+ ++L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDERGFFSESYNKQVLETLGITYSFVQDNVSYSAKAGTIRGLHFQKK 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R+ SPT+ W +S +N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKKSPTFKQWKGYILSGDNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS EHDSG+ W+DK + I WP+ D IL S+KDQ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSAEHDSGLLWEDKDLAIPWPVTDPIL---SDKDQILPLLEEYEDSF 181
>gi|229010610|ref|ZP_04167811.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus mycoides DSM 2048]
gi|229132118|ref|ZP_04260977.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus BDRD-ST196]
gi|229166160|ref|ZP_04293920.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH621]
gi|228617258|gb|EEK74323.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH621]
gi|228651338|gb|EEL07314.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus BDRD-ST196]
gi|228750654|gb|EEM00479.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus mycoides DSM 2048]
Length = 181
Score = 181 bits (458), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 124/178 (69%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R FED RG+F+++Y+ K+L+ LG+ F+QDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFEDERGFFTESYNKKMLESLGITHSFLQDNVSYSAHSGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFKKWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS +HDSG+ W+DK + I WP+ + IL S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSADHDSGLLWEDKELSIPWPVTNPIL---SDKDRILPLLQEYEDSF 181
>gi|229101900|ref|ZP_04232614.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock3-28]
gi|228681483|gb|EEL35646.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock3-28]
Length = 181
Score = 181 bits (458), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDERGFFTESYNKKVLETLGITYSFVQDNVSYSAQAGTIRGLHFQKK 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R+ SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKGSPTFRQWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS EHDSG+ W+DK + I WP+ + IL S+KD+ LP L + D F
Sbjct: 127 HTLVMYKVDEYYSAEHDSGLLWEDKELAIPWPVANPIL---SDKDRILPLLQEYDDSF 181
>gi|134300868|ref|YP_001114364.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfotomaculum reducens
MI-1]
gi|134053568|gb|ABO51539.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfotomaculum reducens
MI-1]
Length = 186
Score = 180 bits (457), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 89/180 (49%), Positives = 115/180 (63%), Gaps = 2/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N++ V I++ F D RGWF +TY+ E GL FVQDN SFS GT+RG+H+Q
Sbjct: 7 NLDGVIIVEPAVFGDHRGWFMETYNESKFLEAGLTYKFVQDNQSFSAVKGTLRGIHYQLN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKLVRCI G IFDIAVDIR+ SP +G W+ ++++A N Q+ IP GFAHGFMTL
Sbjct: 67 PKAQAKLVRCIRGAIFDIAVDIRKGSPNFGKWIGIKLTAENKKQLLIPRGFAHGFMTLTE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ EV YKV + Y+ E D + W D I I WP+ I P +S KD+ P L ++ F Y
Sbjct: 127 DVEVQYKVDELYAPELDRSILWSDPVIGIKWPM--DITPLLSTKDEKAPLLEDAENNFSY 184
>gi|169831838|ref|YP_001717820.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Desulforudis
audaxviator MP104C]
gi|169638682|gb|ACA60188.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Desulforudis
audaxviator MP104C]
Length = 190
Score = 180 bits (457), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 89/181 (49%), Positives = 117/181 (64%), Gaps = 4/181 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I + +++ + F D RG+F +TYS + G++ FVQDNHS S +RGLH+Q+
Sbjct: 8 LTIPDLVLVEPKVFGDERGFFMETYSYRDFAVFGIRAAFVQDNHSLS-RGPVLRGLHYQK 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQAKLVRCI G IFD+AVDIRR SPTYG WV +E+SA N Q+Y+P GFAHGF L
Sbjct: 67 KPMAQAKLVRCIHGAIFDVAVDIRRGSPTYGKWVGVELSAENKRQLYLPRGFAHGFCALT 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
EV+YKV ++YS EHD G+ + D + I WP+ P +S KD LP L D+ F
Sbjct: 127 EVVEVVYKVDNYYSPEHDRGIIYNDPDLGIVWPVAR---PLLSPKDARLPRLKDADNSFV 183
Query: 181 Y 181
Y
Sbjct: 184 Y 184
>gi|229106721|ref|ZP_04236952.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock3-28]
gi|228676719|gb|EEL31334.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock3-28]
Length = 185
Score = 180 bits (457), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 85/176 (48%), Positives = 117/176 (66%), Gaps = 3/176 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V IL+ + F D RG+F ++Y+ ++ +LGL F+QDN S S GT+RGLHFQ P AQ
Sbjct: 11 VVILEPKVFGDHRGYFMESYNKEIFNKLGLDYEFIQDNQSLSVPAGTLRGLHFQLNPKAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
K+VRCI G I+D+AVDIR+ SPTYG W+ + +S +N Q+ +P GFAHGF TL N+ V
Sbjct: 71 TKIVRCITGAIYDVAVDIRKGSPTYGQWIGVILSEHNKRQLVVPKGFAHGFCTLVPNSTV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YKV ++YS HD+G+ W D ++ I WP+ + IL SEKD P L + + F Y
Sbjct: 131 AYKVDEYYSPNHDAGILWNDPALGIDWPVSEPIL---SEKDTKHPLLEEANINFVY 183
>gi|149203262|ref|ZP_01880232.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseovarius sp. TM1035]
gi|149143095|gb|EDM31134.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseovarius sp. TM1035]
Length = 189
Score = 180 bits (457), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 88/181 (48%), Positives = 119/181 (65%), Gaps = 1/181 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N+ V IL + D+RG+FS++++ + ++E G+ FVQDNHS S GT+RGLHFQ P
Sbjct: 7 NLPGVVILTPARHGDTRGFFSESWNRRRMQEAGITIDFVQDNHSLSEQVGTVRGLHFQSP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQAKLVRC G ++D+AVDIRR SPTYG WV +++S NG Q+ IP GF HGF+T
Sbjct: 67 PHAQAKLVRCGRGALYDVAVDIRRGSPTYGQWVGVDLSFENGRQLLIPEGFLHGFVTRAP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
TE+IYK +D+Y+ E D V + D I I W +D +S KD P L + SPF Y
Sbjct: 127 MTEIIYKCSDYYAPECDGAVRFDDPEIGIDWG-IDPAAAVLSGKDAKAPLLREFVSPFVY 185
Query: 182 D 182
+
Sbjct: 186 E 186
>gi|167648897|ref|YP_001686560.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caulobacter sp. K31]
gi|167351327|gb|ABZ74062.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caulobacter sp. K31]
Length = 190
Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/187 (45%), Positives = 118/187 (63%), Gaps = 7/187 (3%)
Query: 1 MNINP-----VRILKTRKFEDSRGWFSQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIR 54
MNI P V ++ + DSRGWFS+T+ L+E G + FVQDNH S G +R
Sbjct: 1 MNIQPLSVPDVLLITPARHGDSRGWFSETFRQSALEEAGFEGGAFVQDNHVRSTRRGILR 60
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
GLHFQ+PP+AQ KL+RC G IFD+AVDIRR SPT+G WV E+SA+N Q+ +P GFAH
Sbjct: 61 GLHFQKPPHAQDKLLRCARGAIFDVAVDIRRGSPTFGQWVGAELSADNARQLLVPKGFAH 120
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ TL EV+YKVTD+Y+ + + W D ++ I WP+ + S +++D L
Sbjct: 121 AYCTLTEECEVLYKVTDYYAPAAEGALRWNDPAVGIDWPVPAAEI-STNDRDAAASLLAD 179
Query: 175 IDSPFEY 181
+D+PF Y
Sbjct: 180 LDTPFTY 186
>gi|328765894|gb|EGF75990.1| hypothetical protein BATDEDRAFT_15110 [Batrachochytrium
dendrobatidis JAM81]
Length = 191
Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/180 (47%), Positives = 118/180 (65%), Gaps = 3/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N+ V+I++ + F+D+RG+F ++++ + +LG F+QDNHS S D IRGLHFQ
Sbjct: 7 NLQDVKIIEPKVFKDNRGYFMESFNQQTFADLGNNYYFIQDNHSLSLDKDVIRGLHFQLS 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVR I G I+D+AVDIR+ SPT+G WV + +S N + +P GFAHGF TL
Sbjct: 67 PKAQTKLVRVITGAIYDVAVDIRKGSPTFGSWVGVTLSEENHRMLLVPKGFAHGFCTLTE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
NT V YKV +YS E+D G+ W D ++ I WP T P +SEKD++ P LN + F+Y
Sbjct: 127 NTHVQYKVDAYYSSENDKGIRWNDPTLAIDWP---TSKPILSEKDRHQPLLNDAELYFQY 183
>gi|150376943|ref|YP_001313539.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium medicae WSM419]
gi|150031490|gb|ABR63606.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium medicae WSM419]
Length = 193
Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 117/176 (66%), Gaps = 1/176 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ ++ V + ++ D RG+FS+T+S+ ELGL FVQDNHS+S G +RGLH+Q
Sbjct: 8 LGLDEVLEILPQRIGDERGFFSETWSAVRFGELGLALTFVQDNHSYSAAKGVLRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+ Q KLVR + G +FD+AVDIRR SPT+ WV +EISA Q+ IP GFAHGF+TLE
Sbjct: 68 PPFMQNKLVRVVKGAVFDVAVDIRRGSPTFAKWVGVEISARKWNQLLIPKGFAHGFVTLE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+TEVIYKVT YS HD + + D I I WP+ T L +S+KD+ P L Q +
Sbjct: 128 ADTEVIYKVTSPYSPAHDRSIRFDDPDIAIAWPVPSTEL-QLSDKDRTAPLLRQAE 182
>gi|229175942|ref|ZP_04303439.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus MM3]
gi|228607536|gb|EEK64861.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus MM3]
Length = 185
Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 117/177 (66%), Gaps = 3/177 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V IL+ F D RG+F ++Y+ +LGL+ F+QDN S S GT+RGLHFQ P AQ
Sbjct: 11 VLILEPNVFGDHRGYFMESYNKDAFDKLGLKYEFIQDNQSLSVPVGTLRGLHFQLNPKAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
K+VRCI G I+D+AVDIR+ SPTYG W+ + +S +N Q+ +P GFAHGF TL N+ V
Sbjct: 71 TKVVRCITGAIYDVAVDIRKGSPTYGQWIGVILSEHNKRQLVVPKGFAHGFCTLVPNSTV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YKV ++YS EHDSG+ W D ++ I WP+ + IL S+KD P L + + F Y+
Sbjct: 131 AYKVDEYYSPEHDSGILWNDPALGIDWPVSNPIL---SDKDNKHPMLEEANINFVYE 184
>gi|14521384|ref|NP_126860.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pyrococcus abyssi GE5]
gi|5458602|emb|CAB50090.1| rfbC dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13)
(dTDP-4-keto-6-deoxyglucose 3,5-epimerase)
(dTDP-L-rhamnose synthetase) [Pyrococcus abyssi GE5]
Length = 185
Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/175 (49%), Positives = 121/175 (69%), Gaps = 4/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V ++K + FED RG+F +TY ++ G++ FVQDNHS S G +RGLHFQ+
Sbjct: 8 LSIPDVILIKPKVFEDERGFFMETYKKSDFEKAGIKGEFVQDNHSRS-KYGVLRGLHFQK 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQAK+VRCI G IFD+AVD+R+NSPT+G WV + +S N Q+YIP GFAHGF+ L
Sbjct: 67 EPYAQAKIVRCIRGVIFDVAVDLRKNSPTFGKWVGVILSEFNKWQLYIPRGFAHGFLVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
EV+YKV + Y+ E++ G+ W D ++I WP+ + IL SEKD+ P L ++
Sbjct: 127 DVAEVVYKVDNVYAPEYEGGLIWNDPDVNIKWPIDNPIL---SEKDKKWPTLKEL 178
>gi|229171963|ref|ZP_04299528.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus MM3]
gi|228611306|gb|EEK68563.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus MM3]
Length = 181
Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 124/178 (69%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDERGFFTESYNKKVLEALGVTYSFVQDNVSYSAEAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQAMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS +HDSGV W+DK + I WP+ + IL S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSADHDSGVLWEDKDLAIPWPVTNPIL---SDKDRILPLLQECEDSF 181
>gi|327188681|gb|EGE55884.1| dTDP-4-dehydrorhamnose 3,5-epimerase protein [Rhizobium etli
CNPAF512]
Length = 192
Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 112/169 (66%), Gaps = 1/169 (0%)
Query: 13 KFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
+F D RG+FS+ + +E FVQDN S S GT+RGLHFQ P+AQ KLVRC+
Sbjct: 18 RFGDHRGYFSEVFKDAWFRENVADVTFVQDNESLSAQAGTVRGLHFQIAPFAQGKLVRCL 77
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
AGRI D+ VDIR SP+YG W+S E+S + G Q++IP GFAHGF T+E N+ + YKVT
Sbjct: 78 AGRIMDVVVDIRVGSPSYGKWLSQELSPDTGKQLWIPAGFAHGFATIEPNSVISYKVTAP 137
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YS +HD G+AW D +I I WP + + S S+KD+ LP L + S F Y
Sbjct: 138 YSPQHDRGIAWNDPAIGIRWPFDERDMVS-SDKDKTLPRLADLPSHFSY 185
>gi|229095802|ref|ZP_04226781.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock3-29]
gi|229114753|ref|ZP_04244167.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock1-3]
gi|228668818|gb|EEL24246.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock1-3]
gi|228687635|gb|EEL41534.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock3-29]
Length = 181
Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDERGFFTESYNKKVLETLGVTYSFVQDNVSYSAEAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+RR+SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRRDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS +HDSGV W DK + I WP+ IL S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSADHDSGVLWNDKELAIPWPVTSPIL---SDKDRILPLLQECEDSF 181
>gi|149913028|ref|ZP_01901562.1| hypothetical protein RAZWK3B_03530 [Roseobacter sp. AzwK-3b]
gi|149813434|gb|EDM73260.1| hypothetical protein RAZWK3B_03530 [Roseobacter sp. AzwK-3b]
Length = 188
Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 115/176 (65%), Gaps = 2/176 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +L+ R+F D RG+F+++++ K +LG+ FVQDNHS S GT+RGLHFQ PP+AQ
Sbjct: 11 VLLLEPRRFGDERGFFAESWNRKTFLDLGIDIDFVQDNHSVSAAVGTVRGLHFQSPPHAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVRC GR D+AVD R+ SPTYG WV E+S NGLQ+ +P GF HGF+T E +TE+
Sbjct: 71 DKLVRCGRGRFLDVAVDARKGSPTYGQWVGCELSFENGLQLLVPKGFLHGFVTREPDTEI 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
IYK +D+Y+ + D V + D + I W L P +SEKD DSPF Y
Sbjct: 131 IYKCSDYYAPDCDGAVRFDDPDLGIDWGLDGA--PVLSEKDAKAQSFAAFDSPFIY 184
>gi|225863169|ref|YP_002748547.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus 03BB102]
gi|229183519|ref|ZP_04310743.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus BGSC 6E1]
gi|225790174|gb|ACO30391.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus 03BB102]
gi|228599929|gb|EEK57525.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus BGSC 6E1]
Length = 181
Score = 179 bits (453), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDDRGFFTESYNKKVLETLGVTHSFVQDNVSYSAEAGTIRGLHFQKS 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS +HDSGV W DK + I WP+ IL S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSADHDSGVLWNDKELAIPWPVTSPIL---SDKDRILPLLQECEDSF 181
>gi|86357153|ref|YP_469045.1| dTDP-rhamnose-3,5-epimerase protein [Rhizobium etli CFN 42]
gi|86281255|gb|ABC90318.1| probable dTDP-rhamnose-3,5-epimerase protein [Rhizobium etli CFN
42]
Length = 192
Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 112/169 (66%), Gaps = 1/169 (0%)
Query: 13 KFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
+F D RG+FS+ + +E F+QDN S S GT+RGLHFQ PP AQ KLVRC+
Sbjct: 18 RFGDHRGYFSEVFKDAWFRENVADVTFIQDNESLSAQAGTVRGLHFQIPPLAQGKLVRCL 77
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
AGRI D+ VDIR SP+YG W+S E+S G Q++IP GFAHGF+T+E N+ + YKVT
Sbjct: 78 AGRIMDVVVDIRVGSPSYGKWLSQELSPETGKQLWIPAGFAHGFVTIEPNSVISYKVTAP 137
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YS +H+ G+AW D +I I WP + + S S+KD+ LP L + S F Y
Sbjct: 138 YSPQHERGIAWNDPAIGIGWPFDERDMVS-SDKDKTLPRLADLPSHFSY 185
>gi|15890372|ref|NP_356044.1| dTDP-rhamnose-3,5-epimerase [Agrobacterium tumefaciens str. C58]
gi|11385991|gb|AAG35059.1|AF314183_1 dTDP-rhamnose-3,5-epimerase [Agrobacterium tumefaciens]
gi|15158589|gb|AAK88829.1| dTDP-rhamnose-3,5-epimerase [Agrobacterium tumefaciens str. C58]
Length = 189
Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/185 (47%), Positives = 118/185 (63%), Gaps = 7/185 (3%)
Query: 1 MNINPVRILKT---RKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLH 57
+ + P+ LK +F D+RG+FS+ + + +E FVQDN S S GT+RGLH
Sbjct: 3 LEVFPISGLKKIIPARFGDNRGYFSEVFKREWFRENVANVEFVQDNESLSAQAGTVRGLH 62
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
FQ P+AQ KLVRCI GR+ D+AVDIR SPT+G W ++E+S NG Q+++P GFAHGFM
Sbjct: 63 FQTEPFAQGKLVRCIRGRLLDVAVDIRTGSPTFGQWAAVELSPENGEQLWVPAGFAHGFM 122
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP-LLDTILPSVSEKDQNLPFLNQID 176
TL +T + YKVT YS HD GV W D +I I WP + D +L S+KD P L+++
Sbjct: 123 TLVADTVISYKVTAPYSAAHDRGVKWDDPAIGINWPNVADCVL---SDKDAKQPLLSELP 179
Query: 177 SPFEY 181
F Y
Sbjct: 180 EYFTY 184
>gi|30261324|ref|NP_843701.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str. Ames]
gi|47526494|ref|YP_017843.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str. 'Ames
Ancestor']
gi|49184156|ref|YP_027408.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
Sterne]
gi|65318592|ref|ZP_00391551.1| COG1898: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Bacillus anthracis str. A2012]
gi|118476792|ref|YP_893943.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis str.
Al Hakam]
gi|165872831|ref|ZP_02217457.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0488]
gi|167636119|ref|ZP_02394424.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0442]
gi|167641195|ref|ZP_02399449.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0193]
gi|170686788|ref|ZP_02878008.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0465]
gi|170708891|ref|ZP_02899325.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0389]
gi|177654415|ref|ZP_02936312.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0174]
gi|196036175|ref|ZP_03103574.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus W]
gi|196037366|ref|ZP_03104677.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus NVH0597-99]
gi|196044277|ref|ZP_03111513.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus 03BB108]
gi|218902415|ref|YP_002450249.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH820]
gi|227815935|ref|YP_002815944.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str. CDC
684]
gi|228913891|ref|ZP_04077516.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228926356|ref|ZP_04089428.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228932594|ref|ZP_04095473.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228944926|ref|ZP_04107287.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229120841|ref|ZP_04250083.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus 95/8201]
gi|229599940|ref|YP_002865745.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0248]
gi|254682614|ref|ZP_05146475.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
CNEVA-9066]
gi|254725412|ref|ZP_05187194.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A1055]
gi|254734032|ref|ZP_05191746.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
Western North America USA6153]
gi|254740821|ref|ZP_05198510.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
Kruger B]
gi|254753664|ref|ZP_05205700.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
Vollum]
gi|254758761|ref|ZP_05210788.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
Australia 94]
gi|301052860|ref|YP_003791071.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis CI]
gi|30255178|gb|AAP25187.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str. Ames]
gi|47501642|gb|AAT30318.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str. 'Ames
Ancestor']
gi|49178083|gb|AAT53459.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
Sterne]
gi|118416017|gb|ABK84436.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis str.
Al Hakam]
gi|164711408|gb|EDR16959.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0488]
gi|167510836|gb|EDR86228.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0193]
gi|167528473|gb|EDR91238.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0442]
gi|170126207|gb|EDS95100.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0389]
gi|170669311|gb|EDT20054.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0465]
gi|172080699|gb|EDT65781.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0174]
gi|195991150|gb|EDX55119.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus W]
gi|196024916|gb|EDX63587.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus 03BB108]
gi|196031608|gb|EDX70204.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus NVH0597-99]
gi|218537776|gb|ACK90174.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH820]
gi|227007473|gb|ACP17216.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str. CDC
684]
gi|228662501|gb|EEL18099.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus 95/8201]
gi|228814595|gb|EEM60855.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228827063|gb|EEM72818.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228833180|gb|EEM78745.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228845830|gb|EEM90856.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|229264348|gb|ACQ45985.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0248]
gi|300375029|gb|ADK03933.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus biovar
anthracis str. CI]
Length = 181
Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDDRGFFTESYNKKVLETLGVTHSFVQDNVSYSAEAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS +HDSGV W DK + I WP+ IL S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSADHDSGVLWNDKELAIPWPVTSPIL---SDKDRILPLLQECEDSF 181
>gi|222148114|ref|YP_002549071.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Agrobacterium vitis S4]
gi|221735102|gb|ACM36065.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Agrobacterium vitis S4]
Length = 187
Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/182 (47%), Positives = 123/182 (67%), Gaps = 5/182 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V ++ ++F D+RG+F +T+ + L + FVQDN SFS + GT+RGLHFQ
Sbjct: 7 KLSGVFLITPKRFGDARGYFMETFRASLFESEVGSFTFVQDNKSFSAEVGTVRGLHFQLN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLV C AG + D+AVDIR+ SPTYG V E++A NG Q+++P GFAHGF TL+
Sbjct: 67 PRAQGKLVSCAAGALLDVAVDIRQGSPTYGQMVKAELTAENGCQLWVPPGFAHGFCTLQP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD--TILPSVSEKDQNLPFLNQIDSPF 179
NT + YKVTD+YS +HD G+ W D ++ I WP+ + IL SEKD+ P L+++++ F
Sbjct: 127 NTVISYKVTDYYSPDHDRGLLWNDPALAIDWPVTEDNAIL---SEKDKKQPKLSELETNF 183
Query: 180 EY 181
Y
Sbjct: 184 VY 185
>gi|190891199|ref|YP_001977741.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhizobium etli CIAT 652]
gi|190696478|gb|ACE90563.1| dTDP-4-dehydrorhamnose 3,5-epimerase protein [Rhizobium etli CIAT
652]
Length = 192
Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 111/169 (65%), Gaps = 1/169 (0%)
Query: 13 KFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
+F D RG+FS+ + +E FVQDN S S GT+RGLHFQ P+AQ KLVRC+
Sbjct: 18 RFGDHRGYFSEVFKDAWFRENVADVTFVQDNESLSAQAGTVRGLHFQISPFAQGKLVRCL 77
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
AGRI D+ VDIR SP+YG W+S E+S G Q++IP GFAHGF T+E N+ + YKVT
Sbjct: 78 AGRIMDVVVDIRVGSPSYGEWLSQELSPETGKQLWIPAGFAHGFATIEPNSVISYKVTAP 137
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YS +HD G+AW D +I I WP + + S S+KD+ LP L + S F Y
Sbjct: 138 YSPQHDRGIAWNDPAIGIRWPFDERDMVS-SDKDKTLPRLADLPSHFSY 185
>gi|332715608|ref|YP_004443074.1| dTDP-rhamnose-3,5-epimerase [Agrobacterium sp. H13-3]
gi|325062293|gb|ADY65983.1| dTDP-rhamnose-3,5-epimerase [Agrobacterium sp. H13-3]
Length = 189
Score = 178 bits (451), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/182 (47%), Positives = 122/182 (67%), Gaps = 4/182 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQ 59
+I+ ++ + +F DSRG+FS+ + + +E + DV FVQDN S S GT+RGLHFQ
Sbjct: 6 FSISGLKKITPARFGDSRGYFSEVFKREWFRE-NVSDVEFVQDNESLSAQAGTVRGLHFQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P+AQ KLVRC+ GR+ D+AVDIR SPT+G W ++E+S NG Q+++P GFAHGFMTL
Sbjct: 65 TQPFAQGKLVRCLRGRLLDVAVDIRTGSPTFGQWTAVELSPENGEQLWVPAGFAHGFMTL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T + YKVT YS +D GV W D +I I WP +D+ + +S+KD P L+++ F
Sbjct: 125 VDDTVISYKVTAPYSAANDRGVKWDDPAIGINWPKMDSCV--LSDKDAKQPSLSELPEYF 182
Query: 180 EY 181
Y
Sbjct: 183 TY 184
>gi|229090264|ref|ZP_04221509.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock3-42]
gi|228693044|gb|EEL46760.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock3-42]
Length = 181
Score = 178 bits (451), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDDRGFFTESYNKKVLETLGVTHSFVQDNVSYSAEAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFKRWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS +HDSGV W DK + I WP+ IL S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSADHDSGVLWNDKELAIPWPVTSPIL---SDKDRILPLLQECEDSF 181
>gi|218681703|ref|ZP_03529504.1| dTDP-4-dehydrorhamnose 3,5-epimerase protein [Rhizobium etli CIAT
894]
Length = 192
Score = 177 bits (450), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 113/169 (66%), Gaps = 1/169 (0%)
Query: 13 KFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
+F D RG+FS+ + +E FVQDN S S GT+RGLHFQ P+AQ KLVRC+
Sbjct: 18 RFGDHRGYFSEVFKDAWFRENVADVTFVQDNESLSAVAGTVRGLHFQIGPFAQGKLVRCL 77
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
AGRI D+ VDIR SP++G W+S E+S G+Q++IP GFAHGF+T+E N+ + YKVT
Sbjct: 78 AGRIMDVVVDIRVGSPSFGKWLSQELSPETGMQLWIPAGFAHGFVTIEPNSVISYKVTAP 137
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YS +HD G+AW D +I I WP + + S S+KD+ LP L + S F Y
Sbjct: 138 YSPQHDRGIAWNDPAIGIRWPFDEKDMVS-SDKDKTLPRLADLPSHFSY 185
>gi|167461465|ref|ZP_02326554.1| dTDP-dehydrorhamnose 3,5-epimerase [Paenibacillus larvae subsp.
larvae BRL-230010]
gi|322381926|ref|ZP_08055879.1| heat-inducible transcription repressor-like protein [Paenibacillus
larvae subsp. larvae B-3650]
gi|321154127|gb|EFX46450.1| heat-inducible transcription repressor-like protein [Paenibacillus
larvae subsp. larvae B-3650]
Length = 185
Score = 177 bits (450), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 119/174 (68%), Gaps = 3/174 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V +L+ + DSRG+F ++++ K+ E GL +VQDNHS+S + GT+RGLH+Q P
Sbjct: 8 LESVILLEPKVHGDSRGFFMESFNQKVFTENGLPVAYVQDNHSYSAEAGTLRGLHYQLSP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLVR AG I+D+AVDIRR+SP++G W + +SA+N + +P G+AHGF TL +
Sbjct: 68 KAQTKLVRVTAGAIYDVAVDIRRDSPSFGHWTGIILSASNKRMLLVPQGYAHGFCTLVPH 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
TEV+YKV + Y+ E D G+AW D S+ I WP+ D P +SEKD+ LP L +
Sbjct: 128 TEVLYKVDELYNPELDRGIAWNDPSLGIDWPVAD---PVLSEKDRTLPLLEDAE 178
>gi|116251392|ref|YP_767230.1| dTDP-rhamnose-3,5-epimerase [Rhizobium leguminosarum bv. viciae
3841]
gi|115256040|emb|CAK07121.1| putative dTDP-rhamnose-3,5-epimerase [Rhizobium leguminosarum bv.
viciae 3841]
Length = 192
Score = 177 bits (450), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 84/169 (49%), Positives = 110/169 (65%), Gaps = 1/169 (0%)
Query: 13 KFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
+F D RG+FS+ + +E F+QDN S S GT+RGLHFQ PP+AQ KLVRC+
Sbjct: 18 RFGDHRGYFSEVFKDAWFRENVADVTFIQDNESLSAQAGTVRGLHFQIPPFAQGKLVRCL 77
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
AGRI D+ VDIR SP++G W+S E+S G Q++IP GFAHGF T+E N+ + YKVT
Sbjct: 78 AGRIMDVVVDIREGSPSFGKWLSQELSPETGKQLWIPAGFAHGFATIEPNSVISYKVTAP 137
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YS +HD G+AW D I I WP + + S S+KD+ LP L + F Y
Sbjct: 138 YSPQHDRGIAWNDPMIGIRWPFDERDMVS-SDKDKTLPRLADLPGHFSY 185
>gi|320530257|ref|ZP_08031327.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas artemidis F0399]
gi|320137690|gb|EFW29602.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas artemidis F0399]
Length = 184
Score = 177 bits (450), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 84/169 (49%), Positives = 114/169 (67%), Gaps = 3/169 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
VRIL+ + F D+RGWF +++S K +++ G+ FVQDNHSFS + GT+RGLH+Q P AQ
Sbjct: 11 VRILEPQVFGDARGWFMESWSQKKMEDAGIHVDFVQDNHSFSVERGTLRGLHYQLNPMAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKL+R G +FD+AVDIRR SPTY W+ +E+SA N Q++IP GFAHGF+TL N EV
Sbjct: 71 AKLLRVSRGAVFDVAVDIRRGSPTYAQWIGIELSAENYRQLFIPRGFAHGFITLTDNVEV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
YK + Y+ + D + W D +I + WP +L SEKD P L +
Sbjct: 131 QYKADNLYAPDCDGNIRWDDPAIGVAWPFTPVVL---SEKDAIAPSLAE 176
>gi|206901649|ref|YP_002250032.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dictyoglomus thermophilum
H-6-12]
gi|206740752|gb|ACI19810.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dictyoglomus thermophilum
H-6-12]
Length = 194
Score = 177 bits (450), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 88/181 (48%), Positives = 120/181 (66%), Gaps = 2/181 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + +++T+ F D+RG+F +TY+ K +E+GL+ FVQDN S S G +RGLHFQ
Sbjct: 11 IKDLVLIETKIFRDNRGFFMETYNQKEFEEIGLKLNFVQDNLSLS-KKGVLRGLHFQFK- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q KL+R I G+++D+AVD+R NSPT+G W +E++ NGL YIP GFAHGF+TLE +
Sbjct: 69 YPQGKLIRVIKGKVYDVAVDLRINSPTFGKWYGVELTGENGLAFYIPEGFAHGFLTLEDD 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
T YK T+ Y E+DSG+ W D IDI WPL +SEKD+NLP L I + +
Sbjct: 129 TYFFYKCTEIYYPEYDSGIIWNDPDIDIKWPLEKVEELIISEKDKNLPKLKDIIDKLKEE 188
Query: 183 G 183
G
Sbjct: 189 G 189
>gi|218280966|ref|ZP_03487556.1| hypothetical protein EUBIFOR_00114 [Eubacterium biforme DSM 3989]
gi|218217737|gb|EEC91275.1| hypothetical protein EUBIFOR_00114 [Eubacterium biforme DSM 3989]
Length = 190
Score = 177 bits (449), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 88/182 (48%), Positives = 122/182 (67%), Gaps = 1/182 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I+ T F D RG+F++TYS +++G+ FVQDN SFS GT+RGLH+Q PP
Sbjct: 8 IPGVLIIDTDVFGDHRGYFTETYSKPKYEKMGITVDFVQDNMSFSAQKGTLRGLHWQNPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLV C G + D+AVDIR+ SPT+G WVS+E+S N Q +IP GFAHGF+TL +
Sbjct: 68 YAQSKLVSCTKGTVIDVAVDIRKGSPTFGQWVSVELSEENHRQFFIPQGFAHGFLTLTDD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW-PLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
E YKV + Y+ E + G+ + D + ++ W LL+ I P +SEKDQ P L + ++ F Y
Sbjct: 128 VEFRYKVDNVYNKESEGGMRYDDPTCNVDWGSLLNGIEPVLSEKDQVGPTLEESNNQFVY 187
Query: 182 DG 183
+G
Sbjct: 188 EG 189
>gi|52144117|ref|YP_082711.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus E33L]
gi|51977586|gb|AAU19136.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus E33L]
Length = 181
Score = 177 bits (448), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 121/178 (67%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDDRGFFTESYNKKVLETLGVTHSFVQDNVSYSAEAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS +HDSGV W DK + I WP+ IL S+KD+ LP L + F
Sbjct: 127 HTIVMYKVDEYYSADHDSGVIWDDKELAIPWPVTSPIL---SDKDRILPLLQECKDSF 181
>gi|160863322|gb|ABX51888.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Cronobacter sakazakii]
Length = 180
Score = 177 bits (448), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 119/175 (68%), Gaps = 4/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I+ V I + + F D RG+F ++++ K E +G + FVQDNHS S CG +RGLH+Q
Sbjct: 7 DISDVLIFEPKVFGDDRGFFFESFNQKTFMEAVGRKVTFVQDNHSKS-ACGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR+NS T+G WV + +SA+N Q++IP GFAHGF+ L
Sbjct: 66 DPYAQGKLVRCVVGEVFDVAVDIRKNSTTFGKWVGVNLSADNKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++Y+ E D G+ W D+ I I WPL+ P +S KD+N LN+I
Sbjct: 126 ETAEFVYKTTNYYNPESDRGIIWNDEDISIEWPLVRD--PILSHKDKNQKKLNEI 178
>gi|325295548|ref|YP_004282062.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065996|gb|ADY74003.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 192
Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 116/181 (64%), Gaps = 4/181 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I+K + F D RG+F +TY ++ G+ FVQDNHS S G +RGLH+Q
Sbjct: 9 EIPEVVIVKPKVFGDERGFFMETYKKSDFEKAGIDTDFVQDNHSKSVK-GVLRGLHYQLE 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVRCI G++FD+AVDIR+ SPT+G WV +E+S+ N L ++IP GFAHGF+TL
Sbjct: 68 PKAQGKLVRCIKGKVFDVAVDIRKGSPTFGKWVGVELSSENKLMLWIPKGFAHGFLTLSE 127
Query: 122 NTEVIYKVTDF-YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
E+IYKV+ YS EHD + W D I I WPL P +SEKD+ PFL + F
Sbjct: 128 EAEIIYKVSGSEYSPEHDRSIRWNDPDIGIEWPLDGE--PILSEKDKLAPFLKDAEINFV 185
Query: 181 Y 181
Y
Sbjct: 186 Y 186
>gi|251798955|ref|YP_003013686.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. JDR-2]
gi|247546581|gb|ACT03600.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. JDR-2]
Length = 182
Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 114/178 (64%), Gaps = 3/178 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V++L+ + D RG+F+++Y+ K +E G+ FVQDNHS S + G +RG+H+Q P AQ
Sbjct: 8 VKLLEPPVYGDHRGFFTESYNEKTARENGILHAFVQDNHSLSVEAGVLRGMHYQLQPKAQ 67
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR AG I+D+ VDIRR SPT+G W +SA N Q+ +P GFAHGF TL + EV
Sbjct: 68 TKLVRVTAGAIYDVVVDIRRGSPTFGQWQGFILSAANKRQLLVPQGFAHGFCTLVPSCEV 127
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
YKV Y+ EHD G+AW D ++ I WP+ IL S+KD P L Q + F Y+G
Sbjct: 128 QYKVDALYAAEHDRGIAWNDPALGIDWPVTKPIL---SDKDAKHPVLAQAEINFVYEG 182
>gi|122934725|gb|ABM68330.1| RmlC [Geobacillus tepidamans]
Length = 183
Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 114/174 (65%), Gaps = 3/174 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ + F D RG+F ++Y+ ++ KELG FVQDNHS S + GT+RGLH+Q PYAQ K
Sbjct: 13 LIEPKVFGDHRGFFMESYNDQVFKELGFNYEFVQDNHSLSIEVGTLRGLHYQLEPYAQTK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR I G I+D+ VDIR+ S TYG W +S N Q+ +P GFAHGF T+ NTEV+Y
Sbjct: 73 LVRVIRGAIYDVIVDIRKGSLTYGKWQGFILSEGNKRQLLVPKGFAHGFCTIVPNTEVLY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
KV ++YS EHD G+ W D + I WP T P +SEKD P L + ++ F Y
Sbjct: 133 KVDNYYSPEHDRGICWNDPDLKIDWP---THSPILSEKDSKHPRLAEAENNFIY 183
>gi|188997299|ref|YP_001931550.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932366|gb|ACD66996.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 188
Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 121/176 (68%), Gaps = 6/176 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+I+K++ FED+RG+F + Y ++ GL FVQDNHS S G +RGLHFQ
Sbjct: 9 EIPEVKIVKSKVFEDARGFFLEFYKKSDFEKAGLNVEFVQDNHSKSVK-GVLRGLHFQEK 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY Q KLVRCI G+IFD+AVDIR +SP + WV++E+S N L ++IP GFAHGF+TL
Sbjct: 68 PYEQGKLVRCIKGKIFDVAVDIRPDSPYFKKWVAVELSEENKLMLWIPPGFAHGFLTLSE 127
Query: 122 NTEVIYKVT-DFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQ 174
E+IYKV+ + YS +D G+ W D+ I+I WPL +D ++ +SEKD+ LP L +
Sbjct: 128 EAEIIYKVSHNEYSPAYDRGIIWNDQDINIKWPLETIDNLI--LSEKDKKLPTLKE 181
>gi|304407809|ref|ZP_07389460.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus curdlanolyticus
YK9]
gi|304343292|gb|EFM09135.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus curdlanolyticus
YK9]
Length = 185
Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 117/181 (64%), Gaps = 3/181 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V++++T F D RG+F+++YS + E G+ FVQDNHS S + G +RG+H+Q P
Sbjct: 8 LSGVKLIETAVFGDHRGFFTESYSEQRFVENGITHRFVQDNHSLSAEAGVLRGMHYQLNP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLVR AG I+D+ VDIRR SPT+G W +SA+N Q+ +P GFAHGF TL N
Sbjct: 68 KAQTKLVRVTAGAIYDVVVDIRRGSPTFGQWQGFILSADNKRQLLVPQGFAHGFCTLVPN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
EV YKV ++YS E+D G+AW D ++ I WP T P +S KD P L D F+Y
Sbjct: 128 CEVQYKVDEYYSPENDRGIAWNDPALAIDWP---TNYPILSNKDGKHPVLADADINFDYK 184
Query: 183 G 183
G
Sbjct: 185 G 185
>gi|49477139|ref|YP_035453.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|49328695|gb|AAT59341.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar konkukian str. 97-27]
Length = 181
Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 121/178 (67%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F++ Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDERGFFTEIYNKKVLETLGVTYSFVQDNVSYSTEAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS +HDSGV W DK + I WP+ IL S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSADHDSGVLWNDKELAIPWPVTSPIL---SDKDRILPLLQECEDSF 181
>gi|218288134|ref|ZP_03492433.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alicyclobacillus
acidocaldarius LAA1]
gi|218241493|gb|EED08666.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alicyclobacillus
acidocaldarius LAA1]
Length = 181
Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 117/178 (65%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V +++ FED+RG+F+++Y+ + LG+ FVQDNHS+S GT+RGLH+Q
Sbjct: 7 DIEGVFLIEPDVFEDARGFFTESYNREKFALLGIDVEFVQDNHSYSAAAGTVRGLHYQLE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVR + G I+D+ VDIRR+SPT+G WV + +SA+N Q+Y+P GFAHGF TL
Sbjct: 67 PAAQTKLVRVVQGAIYDVVVDIRRHSPTFGRWVGVILSADNRRQLYVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV +YS EHD G+ W D + I WP +L SEKD P + + F
Sbjct: 127 HTHVMYKVDTYYSPEHDRGIRWDDPELGIPWPTTKAVL---SEKDAKHPGFREAEINF 181
>gi|209548787|ref|YP_002280704.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534543|gb|ACI54478.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 192
Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/169 (49%), Positives = 111/169 (65%), Gaps = 1/169 (0%)
Query: 13 KFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
+F D RG+FS+ + +E FVQDN S S GT+RGLHFQ PP+AQ KLVRC+
Sbjct: 18 RFGDHRGYFSEVFKDAWFRENVADVTFVQDNESLSAQAGTVRGLHFQIPPFAQGKLVRCL 77
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
AGRI D+ VDIR SP++G W+S E+S G Q++IP GFAHGF+T+E N+ + YKVT
Sbjct: 78 AGRIMDVVVDIRVGSPSFGKWLSQELSPETGKQLWIPAGFAHGFVTIEPNSVISYKVTAP 137
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YS +HD G+AW D I I WP + + S S+KD+ LP L + F +
Sbjct: 138 YSPQHDRGIAWNDPMIGIRWPFDERDMVS-SDKDKTLPRLADLPGHFSF 185
>gi|229016571|ref|ZP_04173511.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH1273]
gi|229022778|ref|ZP_04179302.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH1272]
gi|228738590|gb|EEL89062.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH1272]
gi|228744747|gb|EEL94809.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH1273]
Length = 181
Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDERGFFTESYNKKVLETLGITYSFVQDNVSYSAQAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R+ SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKESPTFKQWKGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS +HDSG+ W+DK + I WP+ + IL S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSAQHDSGLLWEDKELAIPWPVTNPIL---SDKDRILPSLQEYEDSF 181
>gi|116754265|ref|YP_843383.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanosaeta thermophila PT]
gi|116665716|gb|ABK14743.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanosaeta thermophila PT]
Length = 187
Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 115/183 (62%), Gaps = 4/183 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V +++ R F D RG+F ++Y G+++ FVQDNHS S G +RGLH+Q
Sbjct: 8 LDIYDVILIEPRVFRDERGFFMESYKHSEFAAFGIKERFVQDNHSRS-RRGVLRGLHYQN 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP AQ KLVR ++G IFD+AVDIRR SPTYG WV + +S N +YIP GFAHGFMTL
Sbjct: 67 PPRAQGKLVRAVSGEIFDVAVDIRRGSPTYGRWVGVNLSEENMRMLYIPPGFAHGFMTLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+V+YK TD YS EH++G+ W D I I WP P +S +D P L + F
Sbjct: 127 DVADVMYKTTDEYSPEHEAGIIWNDPGIGIEWP---ASRPVLSPRDAKWPGLRDAVNGFV 183
Query: 181 YDG 183
Y+G
Sbjct: 184 YEG 186
>gi|190569148|ref|ZP_03022046.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis
Tsiankovskii-I]
gi|190559731|gb|EDV13718.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis
Tsiankovskii-I]
Length = 181
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 121/178 (67%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDDRGFFTESYNKKVLETLGVTHSFVQDNVSYSAEAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V YKV ++YS +HDSGV W DK + I WP+ IL S+KD+ LP L + + F
Sbjct: 127 HTIVRYKVDEYYSADHDSGVLWNDKELAIPWPVTSPIL---SDKDRILPLLQECEDSF 181
>gi|256831149|ref|YP_003159877.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfomicrobium baculatum
DSM 4028]
gi|256580325|gb|ACU91461.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfomicrobium baculatum
DSM 4028]
Length = 187
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/182 (48%), Positives = 114/182 (62%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +LK + F D RG+F +TYS + L GL FVQDN +FS G +RGLHFQ P
Sbjct: 7 EIPGVLVLKPKVFGDHRGFFCETYSRRQLIAHGLDVDFVQDNEAFSAQAGVLRGLHFQTP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P QAKLVR G ++D+ VD+R SPT+G W +SA N LQ++IP G AHG+MTLE
Sbjct: 67 PMTQAKLVRVGRGAVYDVVVDLRTGSPTFGRWQGFTLSAANFLQLFIPAGLAHGYMTLES 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+T+ +YKV +YS EHD G++ D + I WP L I+ S+KD LP L SPF
Sbjct: 127 DTQFLYKVDQYYSPEHDGGISCLDPVLGIDWPDLPPIM---SDKDVRLPCLADFSSPFRM 183
Query: 182 DG 183
+G
Sbjct: 184 EG 185
>gi|219670474|ref|YP_002460909.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfitobacterium hafniense
DCB-2]
gi|219540734|gb|ACL22473.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfitobacterium hafniense
DCB-2]
Length = 186
Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 114/177 (64%), Gaps = 3/177 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I++ + F D RGWF + +S + +KE GL+ FVQDNHSFS GT+RGLHFQ+ AQ
Sbjct: 11 VYIIEPKVFGDHRGWFMEAWSIQKMKEAGLEYDFVQDNHSFSAQKGTLRGLHFQKGDAAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVRC G + D+AVD+R+ SPTY WV++E+SA N Q+ IP G AH F+TL N E
Sbjct: 71 TKLVRCSRGAVLDVAVDLRKGSPTYKKWVAVELSAENKRQLLIPRGMAHAFLTLTDNVEF 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
+YK +FY E D + W D I++TW + + P VSEKD + P L D F Y+
Sbjct: 131 LYKADNFYCPEADRSIIWNDPEINVTWGIEN---PIVSEKDASAPCLRNSDIDFVYE 184
>gi|324325334|gb|ADY20594.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 181
Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 121/178 (67%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDGRGFFTESYNKKVLETLGITYSFVQDNVSYSAEAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFRQWRGYILSADNHRQLLVPKGFAHGFCTLVS 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS HDSGV W DK + I WP+ IL S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSANHDSGVLWSDKELAIPWPVTSPIL---SDKDRILPSLQECEDSF 181
>gi|222148466|ref|YP_002549423.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Agrobacterium vitis S4]
gi|221735454|gb|ACM36417.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Agrobacterium vitis S4]
Length = 187
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 123/182 (67%), Gaps = 5/182 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V ++ ++F D+RG+F +T+ + L + FVQDN SFS + GT+RGLHFQ
Sbjct: 7 KLSGVFLITPKRFGDARGYFMETFRASLFESEVGPFTFVQDNKSFSAEVGTVRGLHFQLN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLV C AG + D+AVDIR+ SPTYG V E++A NG Q+++P GFAHGF TL+
Sbjct: 67 PRAQGKLVSCAAGALLDVAVDIRQGSPTYGQMVKAELTAENGCQLWVPPGFAHGFCTLQP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD--TILPSVSEKDQNLPFLNQIDSPF 179
NT + YKVTD+YS +HD G+ W D ++ I WP+ + IL S+KD+ P L+++++ F
Sbjct: 127 NTVISYKVTDYYSPDHDRGLLWNDPALAIDWPVTEDNAIL---SDKDKKQPKLSELETNF 183
Query: 180 EY 181
Y
Sbjct: 184 VY 185
>gi|218290277|ref|ZP_03494423.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alicyclobacillus
acidocaldarius LAA1]
gi|218239632|gb|EED06824.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alicyclobacillus
acidocaldarius LAA1]
Length = 181
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 116/178 (65%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V +++ FED+RG+F+++Y+ + LG+ FVQDNHS+S GT+RGLH+Q
Sbjct: 7 DIQGVFLIEPDVFEDARGFFTESYNREKFALLGVDVEFVQDNHSYSAAAGTVRGLHYQLE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVR + G I+D+ VDIRR SPT+G WV + +SA+N Q+Y+P GFAHGF TL
Sbjct: 67 PAAQTKLVRVVQGAIYDVVVDIRRQSPTFGRWVGVILSADNRRQLYVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV +YS EHD G+ W D + I WP +L SEKD P + + F
Sbjct: 127 HTHVMYKVDAYYSPEHDRGIRWDDPELGIPWPTTKAVL---SEKDAKHPSFREAEINF 181
>gi|261409578|ref|YP_003245819.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. Y412MC10]
gi|261286041|gb|ACX68012.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. Y412MC10]
Length = 182
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/185 (45%), Positives = 119/185 (64%), Gaps = 8/185 (4%)
Query: 1 MNINPVRILKTRKFE-----DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M + P+++L E D+RG+F ++Y+ L ++ L F+QDN S S D G +RG
Sbjct: 1 MKVTPLKLLGASLIEPIVHNDNRGFFMESYNQHLFEQNQLDCSFIQDNQSLSKDAGVVRG 60
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q P AQ KL+R ++G I+D+ VDIR+NS TYG W+ + +S +N Q+ +P GFAHG
Sbjct: 61 LHYQLNPKAQTKLIRVLSGAIYDVIVDIRKNSATYGQWIGVILSEHNHRQLLVPKGFAHG 120
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F TL +TEV+YKV D+YS EHD G+ W D + I WP+ + IL SEKDQN P L
Sbjct: 121 FCTLVPDTEVLYKVDDYYSPEHDRGILWNDPELAIDWPMSNPIL---SEKDQNHPLLKNA 177
Query: 176 DSPFE 180
+ FE
Sbjct: 178 ELNFE 182
>gi|42780410|ref|NP_977657.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus ATCC 10987]
gi|42736329|gb|AAS40265.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus ATCC 10987]
Length = 181
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 121/178 (67%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDGRGFFTESYNKKVLETLGITYSFVQDNVSYSAEAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS HDSGV W DK + I WP+ IL S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSANHDSGVLWNDKDLAIPWPVTSPIL---SDKDRILPSLQECEDSF 181
>gi|320352680|ref|YP_004194019.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfobulbus propionicus DSM
2032]
gi|320121182|gb|ADW16728.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfobulbus propionicus DSM
2032]
Length = 183
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 114/170 (67%), Gaps = 4/170 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
I++ + F D RG+F ++Y+ ++ ++L GL FVQDNHS S G +RGLH+Q PP AQ
Sbjct: 14 IIEPKIFGDERGFFYESYNERVFRQLTGLTVNFVQDNHSRS-TRGVLRGLHYQLPPAAQG 72
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVRC+ G +FD+AVDIR+ SPT+G WV L +SA+N Q +IP GFAHGF+ L E +
Sbjct: 73 KLVRCVVGEVFDVAVDIRKQSPTFGRWVGLHLSADNKRQFWIPPGFAHGFVVLSETAEFL 132
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YK T++Y ++D G+ W D + ITWPL DT P +SEKD P +
Sbjct: 133 YKTTEYYQPQYDRGIRWNDPDLAITWPLHDT--PQLSEKDCTAPLFTAAE 180
>gi|260887357|ref|ZP_05898620.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas sputigena ATCC
35185]
gi|330838667|ref|YP_004413247.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas sputigena ATCC
35185]
gi|260862895|gb|EEX77395.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas sputigena ATCC
35185]
gi|329746431|gb|AEB99787.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas sputigena ATCC
35185]
Length = 190
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 119/186 (63%), Gaps = 8/186 (4%)
Query: 1 MNINPVR-----ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
MN+ R IL+ + F D+RGWF +++S K ++E GL FVQDN SFS + GT+RG
Sbjct: 1 MNVTETRLKGVFILEPQVFGDARGWFMESWSKKKMEEAGLFYDFVQDNQSFSAEKGTLRG 60
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q+ P AQAKL+RC G I D+AVDIR+ SP Y WVS+ +SA N Q+ IP GFAHG
Sbjct: 61 LHYQKNPMAQAKLLRCTRGEILDVAVDIRKGSPQYAKWVSVRLSAENKRQLMIPRGFAHG 120
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F+TL + EV YK ++Y+ E D + W D +I + W + T+L S KD+ P L +
Sbjct: 121 FITLTDDVEVQYKADNYYAPECDGNILWSDPAIGVDWEIAPTVL---SAKDEAAPTLAER 177
Query: 176 DSPFEY 181
+S +
Sbjct: 178 ESQLNF 183
>gi|47568422|ref|ZP_00239123.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus G9241]
gi|206977669|ref|ZP_03238561.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus H3081.97]
gi|217958796|ref|YP_002337344.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH187]
gi|222094943|ref|YP_002529003.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Q1]
gi|228984390|ref|ZP_04144569.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229138008|ref|ZP_04266606.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus BDRD-ST26]
gi|229195516|ref|ZP_04322284.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus m1293]
gi|47554970|gb|EAL13320.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus G9241]
gi|206744097|gb|EDZ55512.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus H3081.97]
gi|217065626|gb|ACJ79876.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH187]
gi|221239001|gb|ACM11711.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Q1]
gi|228588056|gb|EEK46106.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus m1293]
gi|228645353|gb|EEL01587.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus BDRD-ST26]
gi|228775359|gb|EEM23746.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 181
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 121/178 (67%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDERGFFTESYNKKVLETLGVTYSFVQDNVSYSTEAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS HDSGV W DK + I WP+ IL S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSANHDSGVLWNDKDLAIPWPVTSPIL---SDKDRILPSLQECEDSF 181
>gi|313673142|ref|YP_004051253.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Calditerrivibrio
nitroreducens DSM 19672]
gi|312939898|gb|ADR19090.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Calditerrivibrio
nitroreducens DSM 19672]
Length = 185
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/175 (49%), Positives = 114/175 (65%), Gaps = 2/175 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ + ++K + F D RG+F +TY K LG+ D FVQDNHS S GTIRGLHFQ+ P
Sbjct: 10 IDGLLVIKPQMFRDDRGFFMETYKESDFKSLGISDRFVQDNHSKS-KKGTIRGLHFQKQP 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVR G +D+AVDIR+ SPT+G W +LE+S N L ++IP GFAHGF+ LE +
Sbjct: 69 HAQGKLVRVTRGAAWDVAVDIRKGSPTFGKWYALELSGENNLMLWIPAGFAHGFLALEDD 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
TE++YK T Y D G+ W D I + WP L I +S+KD LP+L I+
Sbjct: 129 TELLYKCTAEYHAPSDGGIRWNDPIIGVKWPEL-GIPYIISQKDMQLPYLKDIEG 182
>gi|114571007|ref|YP_757687.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Maricaulis maris MCS10]
gi|114341469|gb|ABI66749.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Maricaulis maris MCS10]
Length = 188
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 88/183 (48%), Positives = 114/183 (62%), Gaps = 5/183 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V ++ R+FED RG+FS+TY+ + E G+ FVQDNHS S GT+RGLH+Q
Sbjct: 6 LDIPDVIVVTPRRFEDDRGYFSETYNETVFAEAGIGARFVQDNHSCSLQAGTVRGLHYQS 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVR +G I D+ VD+RR SP +G V EISA G QI++P GF HGF+TL+
Sbjct: 66 LPHAQGKLVRVTSGAIIDVVVDVRRGSPHFGQHVKAEISAEKGSQIWVPAGFLHGFITLQ 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQIDSP 178
NT V YKVTDFY D V W D ++ I W + D IL S+KD + SP
Sbjct: 126 PNTHVTYKVTDFYDAGCDGSVLWSDPALGIDWGIGQSDAIL---SDKDAEAQSWQEFSSP 182
Query: 179 FEY 181
F Y
Sbjct: 183 FLY 185
>gi|242400018|ref|YP_002995443.1| RfbC dTDP-4-dehydrorhamnose 3,5-epimerase [Thermococcus sibiricus
MM 739]
gi|242266412|gb|ACS91094.1| RfbC dTDP-4-dehydrorhamnose 3,5-epimerase [Thermococcus sibiricus
MM 739]
Length = 185
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 117/174 (67%), Gaps = 4/174 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V ++K + FED RG+F +TY ++ G++ F+QDNHS S G +RGLHFQR
Sbjct: 8 LEIPDVILIKPKVFEDERGFFMETYKKPDFEKAGIKGDFIQDNHSKS-KYGVLRGLHFQR 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQAK+VRCI G I+D+AVD+R++SPT+G WV + +S +N Q+YIP GFAHGF+ L
Sbjct: 67 EPYAQAKIVRCIRGVIYDVAVDLRKDSPTFGKWVGVILSEHNKWQLYIPKGFAHGFLVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
EV+YKV + Y+ ++ G+ W D I I WP+ P+VSEKD P L +
Sbjct: 127 DVAEVVYKVDNVYAPNYEGGIIWNDPDIGIDWPVDK---PTVSEKDMKWPTLRE 177
>gi|154151293|ref|YP_001404911.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Methanoregula
boonei 6A8]
gi|153999845|gb|ABS56268.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanoregula boonei 6A8]
Length = 191
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 88/184 (47%), Positives = 120/184 (65%), Gaps = 4/184 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+N + I++ F+D RG+F +TY+ + E+G+ D FVQDN S S G +RGLH+Q
Sbjct: 10 KLNDITIIRPTVFKDDRGFFLETYNREEFAEVGITDEFVQDNVSHSAK-GVVRGLHYQSK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVR + G+IFD+ VDIR SPTYG + +E+ A + +++P GFAHGFM L+
Sbjct: 69 -NAQGKLVRVLRGKIFDVVVDIRNGSPTYGHHLGIELDAQDAGMLFVPVGFAHGFMALKD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQIDSPF 179
TEV+YKVTDFYS ++D+G+ W D + I WP+ + P VS KD LPFL I SPF
Sbjct: 128 ATEVMYKVTDFYSPQYDAGIRWDDPDLRIPWPMKAQEISRPVVSPKDAVLPFLRDIISPF 187
Query: 180 EYDG 183
Y G
Sbjct: 188 NYAG 191
>gi|254168004|ref|ZP_04874852.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aciduliprofundum boonei T469]
gi|289595933|ref|YP_003482629.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aciduliprofundum boonei T469]
gi|197623047|gb|EDY35614.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aciduliprofundum boonei T469]
gi|289533720|gb|ADD08067.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aciduliprofundum boonei T469]
Length = 191
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/172 (47%), Positives = 117/172 (68%), Gaps = 4/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I++ + FED RG+F +TY ++ G++ F+QDNHS S G +RGLHFQR PYAQ
Sbjct: 18 VIIIRPKVFEDERGFFMETYKKDDFEKNGIKGEFLQDNHSHS-KYGVLRGLHFQREPYAQ 76
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AK+VRCI G IFD+AVD+R +SPT+G +V + +S N ++IP GFAHGF+ L +V
Sbjct: 77 AKIVRCIKGEIFDVAVDLRESSPTFGKYVGVVLSEKNKKMLFIPRGFAHGFLVLSEEADV 136
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+YKV + Y+ E++ G+ W D ++I WP I P +SEKD+N P L ++ +
Sbjct: 137 VYKVDNIYAPEYEGGLIWNDPDVNIEWP---EIKPILSEKDKNWPTLKELKN 185
>gi|16357460|gb|AAL18012.1| dTDP-dehydrorhamnose 3,5-epimerase [Aneurinibacillus
thermoaerophilus]
Length = 182
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 117/175 (66%), Gaps = 3/175 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +L+ + F D RG+F ++Y+ +L+ LG+ FVQDN S S + G +RGLH+Q P AQ
Sbjct: 11 VVLLEPKVFGDGRGFFMESYNKAVLEVLGIHIDFVQDNQSLSREAGVLRGLHYQLNPKAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G I+D+ VDIR+NSPT+G W + +S N Q+ +P GFAHGF TL NT+V
Sbjct: 71 TKLVRVLTGAIYDVVVDIRKNSPTFGQWEAFILSEENKRQLLVPKGFAHGFCTLVPNTQV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
YKV ++YS EHD G+AW D +++I WP + IL SEKD+ P L + + FE
Sbjct: 131 FYKVDEYYSPEHDRGIAWDDAALNIPWPTSEPIL---SEKDKCHPVLAEAEINFE 182
>gi|33637042|gb|AAQ23680.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geobacillus
stearothermophilus]
Length = 187
Score = 175 bits (443), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 114/177 (64%), Gaps = 3/177 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +++ + F D RG+F ++Y+ KL E GL F+QDNHS S GTIRGLH+Q P AQ
Sbjct: 11 VWLIEPKVFGDHRGFFMESYNKKLFAEYGLDFDFIQDNHSLSRQAGTIRGLHYQLNPKAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR G I+D+ VDIR+ SPT+G W +SA+N Q+ +P GFAHGF TL NTEV
Sbjct: 71 TKLVRVTRGAIYDVVVDIRKGSPTFGKWQGFILSADNKRQLLVPKGFAHGFCTLVENTEV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YKV ++YS EHD G+ W D ++ I WP T P +S+KD P L + FE++
Sbjct: 131 QYKVDEYYSPEHDRGILWNDPALGIDWP---TANPILSDKDTKHPLLADAEINFEWE 184
>gi|218531920|ref|YP_002422736.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium
chloromethanicum CM4]
gi|218524223|gb|ACK84808.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium
chloromethanicum CM4]
Length = 184
Score = 175 bits (443), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/180 (48%), Positives = 113/180 (62%), Gaps = 5/180 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+ + ++ D RGWFS+ Y + LL E G+ + FVQDN SFS GTIRGLHFQ
Sbjct: 8 EIPAVKRVIPKRHGDDRGWFSEVYRADLLAEHGIANAFVQDNQSFSAPAGTIRGLHFQVA 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKLVR +AG I D+AVD+R +SPTYG V++ + A G Q+++P GFAHGF TLE
Sbjct: 68 PNAQAKLVRVLAGAILDVAVDLRSDSPTYGRHVAVRLDATGGEQLFVPAGFAHGFCTLEP 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQIDSPF 179
+T V YKV +YS D + W D +I I WP+ D IL S KD+ P L + F
Sbjct: 128 DTMVAYKVDAYYSPADDRNLRWNDPAIGIAWPVAEADAIL---SGKDKAAPLLADLGRVF 184
>gi|218530621|ref|YP_002421437.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium
chloromethanicum CM4]
gi|218522924|gb|ACK83509.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium
chloromethanicum CM4]
Length = 183
Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/180 (48%), Positives = 113/180 (62%), Gaps = 5/180 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+ + ++ D RGWFS+ Y + LL E G+ + FVQDN SFS GTIRGLHFQ
Sbjct: 7 EIPAVKRVIPKRHGDDRGWFSEVYRADLLAEHGIANAFVQDNQSFSAPAGTIRGLHFQVA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKLVR +AG I D+AVD+R +SPTYG V++ + A G Q+++P GFAHGF TLE
Sbjct: 67 PNAQAKLVRVLAGAILDVAVDLRSDSPTYGRHVAVRLDATGGEQLFVPAGFAHGFCTLEP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQIDSPF 179
+T V YKV +YS D + W D +I I WP+ D IL S KD+ P L + F
Sbjct: 127 DTMVAYKVDAYYSPADDRNLRWNDPAIGIAWPVAEADAIL---SGKDKAAPLLADLGRVF 183
>gi|187731823|ref|YP_001879841.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella boydii CDC 3083-94]
gi|187428815|gb|ACD08089.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella boydii CDC 3083-94]
Length = 185
Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 117/168 (69%), Gaps = 5/168 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S + G +RGLH+Q PYA
Sbjct: 11 VLIFEPKVFGDERGFFMESFNQKVFEEAIGRKVEFVQDNHSKS-NKGVLRGLHYQLEPYA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRC+ G +FD+AVDIR++SPT+G WV + +S+ N Q++IP GFAHGF+ L E
Sbjct: 70 QGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSSENMRQLWIPEGFAHGFLVLSDTAE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN-LPF 171
+YK T +Y E DSG+ W DK+I I WPL + P +SEKD N LPF
Sbjct: 130 FLYKTTKYYHPESDSGIIWNDKNIGICWPLREK--PIISEKDSNLLPF 175
>gi|260460165|ref|ZP_05808417.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mesorhizobium opportunistum
WSM2075]
gi|259033810|gb|EEW35069.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mesorhizobium opportunistum
WSM2075]
Length = 184
Score = 174 bits (442), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 84/172 (48%), Positives = 116/172 (67%), Gaps = 1/172 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I+ V + ++ D+RG+F +TY+++ + G+ VFVQDNHS+S G +RGLH+Q
Sbjct: 7 LGIDGVLEIVPKRHGDARGFFVETYNAERFAQAGIDLVFVQDNHSYSAAAGVLRGLHYQL 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KL+R I G + D+AVDIRR S T+G WV+LE+SA G QI +P GFAHGF+TL
Sbjct: 67 APRAQDKLLRVIRGSVLDVAVDIRRGSKTFGKWVALEVSAKKGNQILVPKGFAHGFVTLV 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+TEV+YKVTD YS EHD + + D +I I WP L + +S+KD P L
Sbjct: 127 PDTEVLYKVTDTYSPEHDRSICFDDPAIGIEWPSLASGF-QLSDKDLKAPLL 177
>gi|255263144|ref|ZP_05342486.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thalassiobium sp. R2A62]
gi|255105479|gb|EET48153.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thalassiobium sp. R2A62]
Length = 190
Score = 174 bits (442), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 114/178 (64%), Gaps = 1/178 (0%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V IL ++ D RG+FS+ ++S+ E G++ +VQDNHSF+ + G IRG+H QRPP+ Q
Sbjct: 11 VLILTPKRHGDDRGFFSECWNSRTYAENGIEINYVQDNHSFNNEVGVIRGMHAQRPPHPQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVRC G +FD+ VD+R SPTYG W+ E+S NG Q+ +P G HGFMTL TE+
Sbjct: 71 IKLVRCGHGLLFDVVVDVRAGSPTYGQWIGCELSFENGRQLLVPAGCLHGFMTLLPGTEI 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
IYK +D+Y+ E + + + D I I WPL P +S+KD+ P L SPF Y G
Sbjct: 131 IYKCSDYYAPETECSLRFDDPDIGIKWPLGGGT-PILSDKDKAAPLLKDFKSPFTYPG 187
>gi|62955960|gb|AAY23336.1| RmlC [Shigella boydii]
Length = 185
Score = 174 bits (441), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 117/168 (69%), Gaps = 5/168 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S + G +RGLH+Q PYA
Sbjct: 11 VLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKS-NKGVLRGLHYQLEPYA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRC+ G +FD+AVDIR++SPT+G WV + +S+ N Q++IP GFAHGF+ L E
Sbjct: 70 QGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSSENMRQLWIPEGFAHGFLVLSDTAE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN-LPF 171
+YK T +Y E DSG+ W DK+I I WPL + P +SEKD N LPF
Sbjct: 130 FLYKTTKYYHPESDSGIIWNDKNIGICWPLREK--PIISEKDSNLLPF 175
>gi|14590334|ref|NP_142400.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pyrococcus horikoshii OT3]
gi|3256819|dbj|BAA29502.1| 188aa long hypothetical dTDP-4-dehydrorhamnose 3,5-epimerase
[Pyrococcus horikoshii OT3]
Length = 188
Score = 174 bits (441), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 118/175 (67%), Gaps = 4/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V ++K + FED RG+F +TY ++ G++ FVQDNHS S G +RGLHFQR
Sbjct: 11 LEIPDVVLIKPKVFEDERGFFMETYKKSDFEKAGIKGEFVQDNHSKS-KYGVLRGLHFQR 69
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
YAQAK+VRCI G I+D+AVD+RRNSPT+G +V + +S N Q+YIP GFAHGF+ L
Sbjct: 70 GSYAQAKIVRCIRGVIYDVAVDLRRNSPTFGKYVGVILSEYNKYQLYIPRGFAHGFVVLS 129
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
EV+YKV + Y+ +++ G+ W D + I WP+ D IL SEKD+ P L ++
Sbjct: 130 DVAEVVYKVDNVYAPDYEGGLIWNDPDVGIKWPIEDPIL---SEKDKKWPTLREL 181
>gi|212224999|ref|YP_002308235.1| hypothetical dTDP-4-dehydrorhamnose 3,5-epimerase [Thermococcus
onnurineus NA1]
gi|212009956|gb|ACJ17338.1| hypothetical dTDP-4-dehydrorhamnose 3,5-epimerase [Thermococcus
onnurineus NA1]
Length = 185
Score = 174 bits (441), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 117/174 (67%), Gaps = 4/174 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V ++K + FED RG+F +TY ++ G++ FVQDNHS S G +RGLHFQR
Sbjct: 8 LEIPDVILIKPKVFEDERGFFMETYKKSDFEKAGIKGEFVQDNHSKS-RYGVLRGLHFQR 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQAK+VR + G I+D+AVD+R+NSPT+G WV + +S +N Q+YIP GFAHGF+ L
Sbjct: 67 QPYAQAKIVRAVRGVIYDVAVDLRKNSPTFGRWVGVILSEHNKYQLYIPRGFAHGFLVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
EV+YKV + Y+ +++ G+ W D I I WP+ P VSEKD+ P L +
Sbjct: 127 DVAEVVYKVDNVYAPDYEGGIIWNDPDIGIDWPIDG---PIVSEKDRKWPTLKE 177
>gi|229154885|ref|ZP_04282999.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus ATCC 4342]
gi|228628443|gb|EEK85156.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus ATCC 4342]
Length = 181
Score = 174 bits (441), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 120/178 (67%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDERGFFTESYNKKVLETLGVTYSFVQDNVSYSTEAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS HDSGV W DK + I WP+ IL S+KD+ LP L + F
Sbjct: 127 HTIVMYKVDEYYSANHDSGVLWNDKDLAIPWPVTSPIL---SDKDRILPSLQDCEDSF 181
>gi|296531723|ref|ZP_06894552.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseomonas cervicalis ATCC
49957]
gi|296267955|gb|EFH13753.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseomonas cervicalis ATCC
49957]
Length = 208
Score = 174 bits (441), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 116/172 (67%), Gaps = 1/172 (0%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
++ TR+F D+RG+FS+++S++ L GL FVQDN S S GT+RGLHFQ P QAK
Sbjct: 38 MIGTRRFGDARGYFSESWSARDLAACGLVAEFVQDNFSTSAQVGTLRGLHFQIAPEPQAK 97
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR + GR+ D+AVD+RR SPTYG V++E++A G Q+++P GFAHGF TLE + V Y
Sbjct: 98 LVRVLRGRVLDVAVDLRRASPTYGQHVAVELTAEAGNQLFVPEGFAHGFCTLEPDCAVAY 157
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
KVT +Y+ D GVAW D + I WPL P +S+KD P L ++ + F
Sbjct: 158 KVTGYYAPACDKGVAWDDPDLAIAWPLPPGG-PVLSDKDARQPKLAELPAYF 208
>gi|254168131|ref|ZP_04874978.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aciduliprofundum boonei T469]
gi|197622897|gb|EDY35465.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aciduliprofundum boonei T469]
Length = 191
Score = 174 bits (441), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 117/176 (66%), Gaps = 4/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I+ + FED RG+F +TY ++ G++ F+QDNHS+S G +RGLHFQR
Sbjct: 14 EIRDVIIITPKVFEDERGFFMETYKKDDFEKNGIKGEFLQDNHSYS-KYGVLRGLHFQRE 72
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQAK+VRCI G IFD+AVD+R +SPT+G +V + +S N ++IP GFAHGF+ L
Sbjct: 73 PYAQAKIVRCIKGEIFDVAVDLRESSPTFGKYVGVVLSEENKKMLFIPRGFAHGFLVLGE 132
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+V+YKV Y+ E++ G+ W D ++I WP I P +SEKD+N P L ++ +
Sbjct: 133 EADVMYKVDSVYAPEYEGGLIWSDPDVNIKWP---EIKPILSEKDKNWPTLRELKN 185
>gi|9957823|gb|AAG09505.1|AF279616_4 dTDP-6-deoxy-D-glucose-3,5-epimerase [Salmonella enterica]
Length = 177
Score = 174 bits (441), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 115/168 (68%), Gaps = 4/168 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q PYA
Sbjct: 11 VLIFEPKVFSDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKS-TKGVLRGLHYQVEPYA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRCIAG +FD+AVDIR++S T+G WV + IS+ N Q++IP GFAHGF+ L E
Sbjct: 70 QGKLVRCIAGEVFDVAVDIRKDSETFGKWVGVNISSENKRQLWIPEGFAHGFLVLGEEAE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+YK ++FY+ + D GVAW D I I WPL++ P +S KD PFL
Sbjct: 130 FVYKTSNFYNPDSDRGVAWNDPDIGINWPLINN--PLLSNKDSKQPFL 175
>gi|229028989|ref|ZP_04185088.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH1271]
gi|228732269|gb|EEL83152.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH1271]
Length = 168
Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 119/171 (69%), Gaps = 3/171 (1%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKL 68
++ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+ P AQ KL
Sbjct: 1 MEPRLFGDERGFFTESYNKKVLETLGVTYSFVQDNVSYSAEAGTIRGLHFQKNPKAQTKL 60
Query: 69 VRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128
++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL +T V+YK
Sbjct: 61 IQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVAHTIVMYK 120
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
V ++YS +HDSGV W DK + I WP+ IL S+KD+ LP L + + F
Sbjct: 121 VDEYYSADHDSGVIWDDKELAIPWPVTSPIL---SDKDRILPLLQEYEDSF 168
>gi|170748798|ref|YP_001755058.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium
radiotolerans JCM 2831]
gi|170655320|gb|ACB24375.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium
radiotolerans JCM 2831]
Length = 183
Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 114/178 (64%), Gaps = 1/178 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+ + ++F D+RGWFS+T+ + L G+ F+QDN SFS GT+RGLHFQ
Sbjct: 7 EIPDVKRIVLKRFGDARGWFSETFRADTLARAGIATPFIQDNQSFSAPQGTVRGLHFQIA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKL+R + G I D+AVDIR +SPTYG +V++ + A G Q+YIP GFAHGF TL
Sbjct: 67 PRAQAKLIRVLQGAILDVAVDIRSDSPTYGKYVAVTLDAEKGEQLYIPHGFAHGFCTLTP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ V YKV D+YS EHD + W D +I I WP+ +S+KD+ P L + S F
Sbjct: 127 DVMVTYKVDDYYSPEHDRALFWNDPAIGIPWPVSGEAA-ILSDKDRRAPKLADLGSVF 183
>gi|209967309|ref|YP_002300224.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Rhodospirillum
centenum SW]
gi|209960775|gb|ACJ01412.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Rhodospirillum
centenum SW]
Length = 191
Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 116/181 (64%), Gaps = 1/181 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V ++ R+F D RG+F + Y + + G+ F+QDN S S T+RGLHFQRPP
Sbjct: 8 IAGVLLITPRRFFDDRGYFVELYQEERYRAAGVDARFMQDNRSLSRPVYTVRGLHFQRPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQAKLV+ + G I D+AVDIR SPT+G V++ +SA G Q+Y+P GFAHGF TLE +
Sbjct: 68 FAQAKLVQVLRGSIVDVAVDIRHGSPTFGRHVAVTLSAEAGNQLYVPAGFAHGFCTLEPD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
TEV YKV+ YS EHD G+ W D ++ I WP VS+KD+ LP L + F Y+
Sbjct: 128 TEVHYKVSAPYSREHDGGIHWADPALGIDWP-AGPDRAVVSDKDRVLPRLADLGPLFHYE 186
Query: 183 G 183
G
Sbjct: 187 G 187
>gi|325169025|ref|YP_004285771.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium multivorum
AIU301]
gi|325052900|dbj|BAJ83234.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium multivorum
AIU301]
Length = 184
Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 88/175 (50%), Positives = 115/175 (65%), Gaps = 3/175 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+++ +F DSRGWFS+T++ L LG + FVQDNHS S GTIRGLH Q P+AQ
Sbjct: 10 VKLITPPRFADSRGWFSETWNQAKLAALGFTETFVQDNHSCSTRPGTIRGLHCQIAPFAQ 69
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVRCI G I+D+AVDIR SP +G + + E+SA NG Q++IP GF HGF TLE +TEV
Sbjct: 70 GKLVRCIRGAIWDVAVDIRHGSPGFGRFAAAELSAANGAQLWIPPGFLHGFCTLEPDTEV 129
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLL-DTILPSVSEKDQNLPFLNQIDSPF 179
+YKVT Y + GV W D + + WP+ D L +S+KD LP L + + F
Sbjct: 130 VYKVTAPYDKASERGVIWNDPDLALPWPVPGDGAL--LSDKDNLLPRLAEAEPWF 182
>gi|292669522|ref|ZP_06602948.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas noxia ATCC 43541]
gi|292648731|gb|EFF66703.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas noxia ATCC 43541]
Length = 186
Score = 174 bits (440), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 112/169 (66%), Gaps = 3/169 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V IL+ + F D+RGWF +++S K ++ G+ FVQDNHSFS GT+RGLH+Q P AQ
Sbjct: 11 VFILEPQVFGDARGWFMESWSQKKMENAGINVNFVQDNHSFSAQRGTLRGLHYQLNPMAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKL+R G IFD+AVDIRR SPTY WV +E+SA N Q++IP GFAHGF+TL N EV
Sbjct: 71 AKLLRVSRGAIFDVAVDIRRGSPTYAKWVGIELSAENYRQLFIPRGFAHGFITLTDNVEV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
YK +FY+ D + W D I I WP+ +L S+KD P L++
Sbjct: 131 QYKADNFYAPGCDGNIRWNDPVISIVWPMNPRVL---SDKDAAAPTLSE 176
>gi|188581603|ref|YP_001925048.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium populi
BJ001]
gi|179345101|gb|ACB80513.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium populi
BJ001]
Length = 183
Score = 174 bits (440), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 85/177 (48%), Positives = 112/177 (63%), Gaps = 1/177 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+ + ++ D RGWFS+ Y + +L E G+ + FVQDN SFS GTIRGLHFQ P
Sbjct: 8 IPAVKRVIPKRHGDGRGWFSEVYRADVLAEHGIANAFVQDNQSFSAPAGTIRGLHFQVAP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQAKLVR +AG I D+AVD+R +SP+YG V++ + A G Q+++P GFAHGF TLE N
Sbjct: 68 NAQAKLVRVLAGAILDVAVDLRSDSPSYGRHVAVRLDAAGGEQLFVPAGFAHGFCTLEPN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
T V YKV +YS D + W D +I I WP+ D +S KD+ P L + F
Sbjct: 128 TMVAYKVDAYYSPADDRNLRWNDPAIGIEWPVADADA-ILSGKDKGAPLLADLGRVF 183
>gi|46202496|ref|ZP_00053128.2| COG1898: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Magnetospirillum magnetotacticum MS-1]
Length = 186
Score = 174 bits (440), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 120/179 (67%), Gaps = 5/179 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V++L ++F D RG+F++TY++ +L E G+ VFVQDN SFS G +RGLHFQR
Sbjct: 6 LAIPEVKVLTPKRFGDDRGFFAETYNAHILAEHGITAVFVQDNQSFSRPAGVVRGLHFQR 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KL+R + G I D VDIR SP++G V++E+S+ + I++P GFAHGFMTLE
Sbjct: 66 EPYAQDKLLRVVRGAILDAVVDIRPGSPSFGQAVTVELSSEDSASIFVPKGFAHGFMTLE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTI----LPSVSEKDQNLPFLNQI 175
+TEV YKV+ Y+ E + G+ W+D + I+WP LD I +++ +DQ+ L +
Sbjct: 126 PDTEVFYKVSYRYTPEAEGGIHWRDPDLAISWP-LDRIGGEGAVTIAARDQSFGLLRDL 183
>gi|159904979|ref|YP_001548641.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanococcus maripaludis C6]
gi|159886472|gb|ABX01409.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanococcus maripaludis C6]
Length = 187
Score = 173 bits (439), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 87/177 (49%), Positives = 117/177 (66%), Gaps = 6/177 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +++ + F D RG+F ++Y S + G+ + FVQDNHS S G +RGLHFQ+
Sbjct: 8 LEIPEVILIEPKVFPDERGFFLESYKSSDFFDAGITENFVQDNHSKS-KYGVLRGLHFQK 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KLVRCI G IFD+AVD+R+NSP YG WV +S N +YIP GFAHGF L
Sbjct: 67 NPKAQGKLVRCITGEIFDVAVDLRKNSPNYGKWVGEILSEENKKMLYIPKGFAHGFCVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ E+IYK T+ Y+ E D+G+ W D +I+I WP++D P +SEKD LP N +DS
Sbjct: 127 SDAEIIYKCTEEYAPECDAGIKWNDNAIEIDWPVVD---PIISEKDSLLP--NLLDS 178
>gi|296447932|ref|ZP_06889841.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylosinus trichosporium
OB3b]
gi|296254569|gb|EFH01687.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylosinus trichosporium
OB3b]
Length = 184
Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 120/176 (68%), Gaps = 3/176 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+I+ +KF D RG+FS+T++ GL FVQDNHS S + G IRGLHFQ P+AQ
Sbjct: 11 VKIVTPKKFGDERGFFSETHNQNKWDAHGLHYRFVQDNHSLSREVGVIRGLHFQTAPFAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + GRI D+AVDIRR+SPT+G V++E+SA N Q+ +P GFAH F TLE +TEV
Sbjct: 71 DKLVRVVRGRILDVAVDIRRSSPTFGRHVAVELSAENWRQLLVPIGFAHAFCTLEPDTEV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFE 180
YKVT+FYS +D G+A+ D + I WP+ L+ + +S+KD+ P L + F+
Sbjct: 131 FYKVTNFYSGANDRGLAFDDPDLGIDWPVALERAV--LSDKDRRWPRLRDLADAFD 184
>gi|163748303|ref|ZP_02155585.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oceanibulbus indolifex
HEL-45]
gi|161378422|gb|EDQ02909.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oceanibulbus indolifex
HEL-45]
Length = 189
Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/177 (49%), Positives = 117/177 (66%), Gaps = 1/177 (0%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V IL + D+RG+FS+++++K L + GL FVQDNHS S T+RGLHFQ PP+AQ
Sbjct: 11 VLILTPVRHGDARGFFSESWNAKTLADAGLDYHFVQDNHSLSEAPNTLRGLHFQTPPHAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKLVRC G +FD+AVDIR SP++G WV +++S NG Q+ IP GF HGF+T TE+
Sbjct: 71 AKLVRCGRGALFDVAVDIRHGSPSFGQWVGVDLSFENGRQLLIPAGFLHGFVTRVPMTEI 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
IYK TD Y+ + D+ V W D I I W L P +S+KD + P L++I F Y+
Sbjct: 131 IYKCTDTYAPDCDAAVRWDDPEIGIDWGLQGQT-PILSKKDASAPLLSEIVPHFTYE 186
>gi|92118532|ref|YP_578261.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrobacter hamburgensis X14]
gi|91801426|gb|ABE63801.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrobacter hamburgensis X14]
Length = 207
Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/180 (46%), Positives = 118/180 (65%), Gaps = 1/180 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V++++T +F D+RG+F +T+ GL F+QDN S S GT+RGLHFQR
Sbjct: 29 LAIPDVKLIRTPRFSDTRGYFCETFQRADFAAQGLDCDFLQDNQSSSDRPGTVRGLHFQR 88
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVR + G I D+AVD+RR+S ++G V++E+S+ + Q+ +P GFAHGF TLE
Sbjct: 89 PPFAQTKLVRVLRGSILDVAVDLRRSSSSFGRHVAMELSSESNEQLLVPAGFAHGFCTLE 148
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T V YKV YS HDSGV W D + I WP+ + ++SEKD+ LP L + FE
Sbjct: 149 PDTVVFYKVDQVYSAAHDSGVNWADSRLGIEWPVA-SAEANLSEKDRGLPMLVDLAPVFE 207
>gi|259414800|ref|ZP_05738723.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Silicibacter sp. TrichCH4B]
gi|259349251|gb|EEW60998.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Silicibacter sp. TrichCH4B]
Length = 182
Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/178 (48%), Positives = 115/178 (64%), Gaps = 4/178 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V+IL +F D RG+FS++++ + ++ G+ FVQDNHS S + GTIRGLHFQ P
Sbjct: 7 KLSGVKILTPARFGDERGFFSESWNRQRMEAHGIDLDFVQDNHSMSAEVGTIRGLHFQAP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVRC G +FD+AVD+R SPTYG WV +E++A NG Q+ +P GF HGF+T
Sbjct: 67 PHAQDKLVRCGQGALFDVAVDVRVGSPTYGDWVGVELTAENGRQLLVPKGFLHGFITRAP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
TE+IYK TD+Y+ E D V W ID W T P +SEKD L SPF
Sbjct: 127 MTEIIYKCTDYYAPECDGAVRWDSCGID--WGF--TGQPILSEKDTAAQALADFKSPF 180
>gi|330994213|ref|ZP_08318141.1| dTDP-4-dehydrorhamnose 3-5-epimerase [Gluconacetobacter sp. SXCC-1]
gi|329758680|gb|EGG75196.1| dTDP-4-dehydrorhamnose 3-5-epimerase [Gluconacetobacter sp. SXCC-1]
Length = 189
Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 113/181 (62%), Gaps = 1/181 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
NI + +L +FED RG+F++TY++ LKE+G+ + FVQDNHS S G +RGLH Q
Sbjct: 6 FNIKGLVLLTPPRFEDDRGYFTETYNAARLKEIGITEPFVQDNHSLSRQRGVVRGLHCQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVRC G I+D+ VDIR SPT+G WV +SA NG Q++IP GF HGF TL
Sbjct: 66 PPHAQGKLVRCTRGSIWDVGVDIRAGSPTFGQWVGETLSAENGAQLWIPAGFLHGFCTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
N EV YK TDF++ E + V W D + I WP+ VS KD + +D F
Sbjct: 126 DNAEVQYKCTDFWNRECERSVRWDDPLLAIDWPVA-AGEAIVSAKDAQALAFSSVDDWFT 184
Query: 181 Y 181
+
Sbjct: 185 H 185
>gi|302340708|ref|YP_003805914.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Spirochaeta smaragdinae DSM
11293]
gi|301637893|gb|ADK83320.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Spirochaeta smaragdinae DSM
11293]
Length = 185
Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 116/180 (64%), Gaps = 4/180 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I + ++K F D RG+F +TY + + G+ ++FVQDNHS S IRGLH Q+
Sbjct: 8 LAIEGLVVVKPHAFVDERGFFMETYKASAFQTAGIHEIFVQDNHSRS-RKNVIRGLHLQK 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PY+Q KLVRC+AG ++D+AVD+R SPTY W LE+SA N L ++P GFAHGF L
Sbjct: 67 NPYSQGKLVRCVAGVVWDVAVDLRVGSPTYKQWYGLELSAENRLMFFLPPGFAHGFAVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL-DTILPSVSEKDQNLPFLNQIDSPF 179
E +YKVT Y+ E D G+ W D I I WP+ D +L +SEKD+ LP+L+ ++ P+
Sbjct: 127 DTAESVYKVTAEYAPESDGGIRWNDPDIGIKWPISEDEVL--ISEKDRGLPWLSDLEEPY 184
>gi|329925154|ref|ZP_08280097.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. HGF5]
gi|328939987|gb|EGG36320.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. HGF5]
Length = 185
Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 117/178 (65%), Gaps = 3/178 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+ ++ +D RG+F ++++ ++LK G+ D F+QDNHS S + G IRGLH+Q P Q
Sbjct: 11 VKRIEPAVHQDHRGFFMESFNDRVLKGCGINDHFIQDNHSMSREAGVIRGLHYQLSPEGQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KL+R ++G I+D+ VDIR SPTYG W +SA N +Q+ +P GFAHGF TL +TEV
Sbjct: 71 TKLIRVVSGAIYDVVVDIRSGSPTYGQWQGFILSAANFIQLLVPKGFAHGFCTLVHDTEV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
IYKV +YS EHD G+AW D ++I WP+ P +S+KD P L ++ + Y+G
Sbjct: 131 IYKVDAYYSPEHDRGIAWNDPDLNIDWPVNK---PVLSDKDSKHPRLALAENNYIYEG 185
>gi|313894857|ref|ZP_07828417.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas sp. oral taxon
137 str. F0430]
gi|312976538|gb|EFR41993.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas sp. oral taxon
137 str. F0430]
Length = 184
Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 112/169 (66%), Gaps = 3/169 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
VRIL+ + F D+RGWF +++S K ++ G+ FVQDNHSFS + GT+RGLH+Q P AQ
Sbjct: 11 VRILEPQVFGDARGWFMESWSQKKMENAGIHVDFVQDNHSFSAERGTLRGLHYQLNPMAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKL+R G +FD+AVDIR SPTY W+ +E+SA N Q++IP GFAHGF+TL N EV
Sbjct: 71 AKLLRVSRGAVFDVAVDIRCGSPTYAQWIGIELSAENYRQLFIPRGFAHGFITLTDNVEV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
YK + Y+ + D + W D +I + WP +L SEKD P L +
Sbjct: 131 QYKADNLYAPDCDGNIRWDDPAIGVAWPFTPVVL---SEKDAIAPSLAE 176
>gi|294635550|ref|ZP_06714030.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Edwardsiella tarda ATCC
23685]
gi|291091119|gb|EFE23680.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Edwardsiella tarda ATCC
23685]
Length = 176
Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/172 (48%), Positives = 118/172 (68%), Gaps = 4/172 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I + + F D RG+F +++S K+ E +G Q FVQDNHS S G +RGLHFQ
Sbjct: 7 DIPDVLIFEPKVFGDDRGFFFESFSMKVFNEAVGRQVEFVQDNHSKS-SKGVLRGLHFQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC G +FD+AVDIR +SPTYG W+ + +S N Q++IP GFAHGF+TL
Sbjct: 66 SPYAQGKLVRCTVGEVFDVAVDIRESSPTYGKWIGVNLSGENKRQLWIPEGFAHGFLTLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
E +YK T++Y +++SG+ W D ++ I+WP ++ ++ +S KD+NLP L
Sbjct: 126 DTAEFLYKATNYYRPDYESGIIWNDPTLSISWPEINGMI--ISTKDKNLPRL 175
>gi|33637049|gb|AAQ23686.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geobacillus
stearothermophilus]
Length = 190
Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/169 (48%), Positives = 111/169 (65%), Gaps = 3/169 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
++D RG+F ++Y+ ++ ++LG FVQDNHS S GTIRGLH+Q P AQ KLVR
Sbjct: 22 YKDERGFFMESYNEQIFRKLGFDVRFVQDNHSLSVKAGTIRGLHYQLNPKAQTKLVRVTR 81
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G I+D+ VDIR+ SPT+G W +S +N Q+ +P GFAHGF TL NTEV YKV ++Y
Sbjct: 82 GAIYDVIVDIRKGSPTFGKWKGFILSEDNKRQLLVPKGFAHGFCTLVENTEVQYKVDEYY 141
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
S EHD G+ W D ++ I WP+ + IL SEKD N P L + F ++
Sbjct: 142 SPEHDRGILWNDPALSIDWPVTNPIL---SEKDANHPLLADAEINFVWE 187
>gi|297526883|ref|YP_003668907.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Staphylothermus hellenicus
DSM 12710]
gi|297255799|gb|ADI32008.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Staphylothermus hellenicus
DSM 12710]
Length = 185
Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 117/175 (66%), Gaps = 4/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M+I V ++ + FED RG+F +TY + G++ FVQDNHS S G +RGLHFQR
Sbjct: 8 MDIPDVVLIIPKVFEDERGFFMETYKKPDFERAGIRGNFVQDNHSRS-RYGVLRGLHFQR 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQAK+VRC+ G I+D+AVD+RRNS T+G +V + +S N +YIP GFAHGF+ L
Sbjct: 67 EPYAQAKIVRCVRGVIYDVAVDLRRNSKTFGKYVGVILSEFNKYMLYIPRGFAHGFLVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
EVIYKV + Y+ E+++G+ W D + I WP+ + IL SEKD+ P L ++
Sbjct: 127 EEAEVIYKVDNLYAPEYEAGLIWNDPDVGIKWPIEEPIL---SEKDKKWPTLREL 178
>gi|152974748|ref|YP_001374265.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152023500|gb|ABS21270.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cytotoxicus NVH
391-98]
Length = 182
Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/173 (47%), Positives = 118/173 (68%), Gaps = 3/173 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+L+ R FED RG+F+++Y+ K ++LG+ F+QDN SFS GT+RGLHFQ+ P AQ K
Sbjct: 13 LLQPRLFEDHRGFFTESYNWKEFQKLGVSYSFIQDNLSFSAKAGTVRGLHFQKEPKAQTK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
L++ + G I+D+ VD+R +SPTY W +S N Q+ +P GFAHGF TL NT V+Y
Sbjct: 73 LIQVLKGAIYDVIVDLRVSSPTYKEWKGFILSEENHRQLLVPKGFAHGFCTLVPNTLVMY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
KV ++YS +HD G+ W D+S+ ITWP+ + IL SEKD+ LP +Q F+
Sbjct: 133 KVDEYYSSDHDDGLYWNDESLAITWPVSEPIL---SEKDKALPTFDQYHDCFK 182
>gi|220924209|ref|YP_002499511.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium nodulans ORS
2060]
gi|219948816|gb|ACL59208.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium nodulans ORS
2060]
Length = 184
Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 117/178 (65%), Gaps = 2/178 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+++ ++F D RGWFS+T+ + +L + G+ F+QDN SFS GT+RG+HFQ P
Sbjct: 8 IPEVKLVIPKRFGDERGWFSETFRADILAQAGITAPFIQDNQSFSAHPGTVRGIHFQTHP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQAKLVR +AG I D+AVD+RR SP+YG V++ + A G Q+YIP GF H F TLE N
Sbjct: 68 HAQAKLVRVLAGAILDVAVDLRRASPSYGRHVAVRLDAEAGHQLYIPIGFGHAFCTLEPN 127
Query: 123 TEVIYKVT-DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
T V YKV +YS EHD + W D ++ I WP + +S+KD+ P L+ + + F
Sbjct: 128 TMVAYKVAGGYYSREHDGNLLWNDPALGIDWP-VSAEAAVLSDKDRAAPRLSDLPALF 184
>gi|298290100|ref|YP_003692039.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Starkeya novella DSM 506]
gi|296926611|gb|ADH87420.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Starkeya novella DSM 506]
Length = 193
Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 113/181 (62%), Gaps = 1/181 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +++ + D RG+F +TY G+ FVQDN S S G +RGLHFQ
Sbjct: 7 LAIPDVVLVQPVRHGDGRGYFCETYKKPAFDAFGIDLAFVQDNESLSRPVGVVRGLHFQT 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP AQAKLVR + G IFD+AVDIRR SP+YG WV+ ++A G Q+++P GFAHGF TLE
Sbjct: 67 PPMAQAKLVRVLRGAIFDVAVDIRRGSPSYGKWVAATLTAEEGNQLFMPHGFAHGFCTLE 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T + YKV YS +D+G+AW D + I WP+ T +S+KD+ P L SPF
Sbjct: 127 PDTLIAYKVDAPYSRPNDAGIAWDDPDLAIDWPVT-TETAVLSDKDRVQPRLRDYASPFA 185
Query: 181 Y 181
Y
Sbjct: 186 Y 186
>gi|254172754|ref|ZP_04879428.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermococcus sp. AM4]
gi|214032910|gb|EEB73738.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermococcus sp. AM4]
Length = 185
Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 117/174 (67%), Gaps = 4/174 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V ++K + F D RG+F +TY + G++ FVQDNHS S G +RGLHFQR
Sbjct: 8 LEIPDVILIKPKVFGDERGFFMETYKKPDFESAGIKGEFVQDNHSRS-RYGVLRGLHFQR 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQAK+VR + G I+D+AVD+R+NSPT+G WV + +S N Q+YIP GFAHGF+ L
Sbjct: 67 EPYAQAKIVRVVRGVIYDVAVDLRKNSPTFGKWVGVILSEFNKWQLYIPRGFAHGFLVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+VIYKV + Y+ +++ G+ W D +DI WP+ + P VSEKD+ LP L +
Sbjct: 127 DVADVIYKVDNVYAPDYEGGIIWNDPELDIDWPVDE---PIVSEKDRKLPTLRE 177
>gi|315231845|ref|YP_004072281.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermococcus barophilus MP]
gi|315184873|gb|ADT85058.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermococcus barophilus MP]
Length = 185
Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/175 (46%), Positives = 119/175 (68%), Gaps = 4/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V ++K + FED RG+F +TY ++ G++ FVQDNHS S G +RGLHFQ+
Sbjct: 8 LEIPDVILIKPKVFEDERGFFMETYKKPDFEKAGIKGEFVQDNHSKS-KYGVLRGLHFQK 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQAK+VRCI G I+D+AVD+R+NSPT+G +V + +S N +YIP GFAHGF+ L
Sbjct: 67 EPYAQAKIVRCIRGVIYDVAVDLRKNSPTFGKYVGVILSEYNKYMLYIPRGFAHGFVVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
EV+YKV + Y+ +++ G+ W D ++I WP+ + P VSEKD+ P L ++
Sbjct: 127 DVAEVVYKVDNVYAPDYEGGLIWNDPDVNIQWPVEN---PVVSEKDKRWPTLKEL 178
>gi|261405318|ref|YP_003241559.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. Y412MC10]
gi|261281781|gb|ACX63752.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. Y412MC10]
Length = 185
Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 116/178 (65%), Gaps = 3/178 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+ ++ +D RG+F ++++ ++ K G+ D F+QDNHS S + G IRGLH+Q P Q
Sbjct: 11 VKRIEPTVHQDHRGFFMESFNDRVFKGCGINDHFIQDNHSMSREAGVIRGLHYQLSPEGQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KL+R ++G I+D+ VDIR SPTYG W +SA N LQ+ +P GFAHGF TL +TEV
Sbjct: 71 TKLIRVVSGAIYDVVVDIRSGSPTYGQWQGFILSAANYLQLLVPKGFAHGFCTLVHDTEV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
IYKV +YS EHD G+AW D ++I WP+ P +S+KD P L ++ + Y+G
Sbjct: 131 IYKVDAYYSPEHDRGIAWNDPDLNIDWPVNK---PVLSDKDSKHPRLALAENNYIYEG 185
>gi|317130378|ref|YP_004096660.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cellulosilyticus DSM
2522]
gi|315475326|gb|ADU31929.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cellulosilyticus DSM
2522]
Length = 226
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 116/176 (65%), Gaps = 3/176 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I++ + F D+RG+F ++Y+ + +++GL+ +QDNHS S + G +RGLH+Q P AQ
Sbjct: 50 VVIIEPKVFGDNRGFFMESYNQEKFQQVGLKYKLIQDNHSLSVEPGVLRGLHYQLNPKAQ 109
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
K+VR G I+D+ VDIR+ SPT+G W+ +S +N QI +P GFAHGF TL NT V
Sbjct: 110 TKIVRVATGAIYDVVVDIRKESPTFGEWIGAILSEHNKRQIVVPKGFAHGFCTLVPNTNV 169
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+YKV ++YS EHD G+ W D I I WP+ + IL SEKD+ P L D F+Y
Sbjct: 170 LYKVDEYYSKEHDRGILWNDPDIGIEWPICNPIL---SEKDKVHPPLTGADINFQY 222
>gi|146293633|ref|YP_001184057.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella putrefaciens
CN-32]
gi|145565323|gb|ABP76258.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella putrefaciens
CN-32]
Length = 182
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 115/167 (68%), Gaps = 4/167 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ + F D RG+F ++++ + + +G FVQDNHS S G +RGLH+Q
Sbjct: 7 KIPDVKIIEPKVFGDERGFFFESFNQQQFEAAVGYSVKFVQDNHSKS-SKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PPYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP+GFAHGF+TL
Sbjct: 66 PPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGQWVGIHLSAENKRQLWIPSGFAHGFVTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E +YK T+FY+ + + + W D I I WPL+D PS+S KDQ
Sbjct: 126 ETAEFLYKTTNFYAPQSEGSICWDDTDIGIEWPLVDK--PSLSSKDQ 170
>gi|170743901|ref|YP_001772556.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium sp. 4-46]
gi|168198175|gb|ACA20122.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium sp. 4-46]
Length = 184
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 116/179 (64%), Gaps = 2/179 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V+++ + D+RGWFS+TY + LL + G+ D+F+QDN SFS GT+RG+HFQ
Sbjct: 7 SIPDVKLVVPARHGDARGWFSETYRADLLAQAGITDLFIQDNQSFSAQVGTVRGIHFQTH 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVR ++G I D+AVD+RR SP+YG V++ + A NG Q+Y+P GF H F TLE
Sbjct: 67 PHAQGKLVRVVSGAILDVAVDLRRASPSYGRHVAVRLDAENGHQLYVPVGFGHAFCTLEP 126
Query: 122 NTEVIYKVT-DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T + YKV+ +YS HD + W D + I WP+ +S KD+ P L + + F
Sbjct: 127 DTAIAYKVSGGYYSPAHDGALLWNDPDLGIDWPVSPEAA-ILSAKDKAAPRLADLPAHF 184
>gi|225848194|ref|YP_002728357.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644619|gb|ACN99669.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 189
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/181 (49%), Positives = 116/181 (64%), Gaps = 4/181 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I+K + F D RG+F + Y K G+ FVQDNHS S G +RGLH+Q
Sbjct: 9 EIPEVLIVKPKVFSDDRGFFLEFYKESEFKAAGIDTNFVQDNHSKSVK-GVLRGLHYQLN 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVRCI G+IFD+AVDIR+ SPT+G +V++E+S N L ++IP GFAHGF+ L
Sbjct: 68 PKAQGKLVRCIKGKIFDVAVDIRKKSPTFGKYVAVELSEENKLMLWIPKGFAHGFLVLSE 127
Query: 122 NTEVIYKVT-DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
E+IYKV+ YS EHD + W D I+I WP +DT P +S+KD+ PFL + F
Sbjct: 128 EAEIIYKVSGSEYSPEHDRAIRWNDPDINIKWP-IDT-YPILSQKDEKAPFLKDAEINFI 185
Query: 181 Y 181
Y
Sbjct: 186 Y 186
>gi|253575947|ref|ZP_04853281.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. oral taxon
786 str. D14]
gi|251844741|gb|EES72755.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. oral taxon
786 str. D14]
Length = 182
Score = 172 bits (436), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 119/180 (66%), Gaps = 3/180 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + V +L+ D RG+F ++Y+ +LK+LG+ FVQDN S S + G +RGLH+Q
Sbjct: 6 LKLEGVFLLEPVVHGDHRGFFMESYNEAVLKQLGINYHFVQDNQSLSSEVGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQAKLVR + G I+D+ +DIRR+SPT+G W+ + +S N Q+ +P GFAHGF TLE
Sbjct: 66 NPKAQAKLVRVLTGAIYDVVLDIRRSSPTFGQWIGVTLSEANKRQLLVPKGFAHGFCTLE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NT+V YKV ++YS EHD G+ W D ++ I WP+ + P +S+KD+ P + + F+
Sbjct: 126 PNTQVFYKVDEYYSPEHDRGILWNDPALKINWPVSE---PLLSDKDRRHPTFAEAEMNFD 182
>gi|1314580|gb|AAC44073.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Sphingomonas sp. S88]
Length = 188
Score = 172 bits (436), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 113/171 (66%), Gaps = 1/171 (0%)
Query: 13 KFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
K+ D RG+FS+ + L G++ +VQDN SFS GTIRGLH Q PP+AQAKLVR +
Sbjct: 19 KYGDHRGFFSEVFKQSTLDAEGVEARWVQDNQSFSAAPGTIRGLHLQAPPFAQAKLVRVL 78
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
G I+D+AVDIRR SPTYG WV +E+SA+ Q+ +P G+AHGFMTL + E++YKV+
Sbjct: 79 RGAIYDVAVDIRRGSPTYGQWVGVELSADKWNQLLVPAGYAHGFMTLVPDCEILYKVSAK 138
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
YS E + + W D + ITWP + + P +SEKD + ++PF Y G
Sbjct: 139 YSKESEMAIRWDDPDLAITWPDIG-VEPVLSEKDAVATPFAEFNTPFFYQG 188
>gi|307320269|ref|ZP_07599688.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium meliloti AK83]
gi|306894148|gb|EFN24915.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium meliloti AK83]
Length = 194
Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/164 (53%), Positives = 108/164 (65%), Gaps = 1/164 (0%)
Query: 13 KFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
+ ED RG+FS+T++ + L E G+ FVQDNHSFS G +RGLH Q PYAQ KLVR I
Sbjct: 21 RIEDERGFFSETWNERKLAEAGIALHFVQDNHSFSAAKGVLRGLHHQLSPYAQDKLVRVI 80
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
G IFD+AVDIRR SPT+ WV+ E+SA QI IP GF+HGF+TLE NTEVIYKVT+
Sbjct: 81 RGAIFDVAVDIRRGSPTFAQWVAAEVSARKWNQILIPKGFSHGFLTLEPNTEVIYKVTNP 140
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YS +D + + D I I WPL +S KD P L Q +
Sbjct: 141 YSPAYDRSIRFDDPEIAIAWPLPVAEF-QLSGKDAAAPPLGQAE 183
>gi|154247475|ref|YP_001418433.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthobacter autotrophicus
Py2]
gi|154161560|gb|ABS68776.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthobacter autotrophicus
Py2]
Length = 188
Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/180 (47%), Positives = 114/180 (63%), Gaps = 4/180 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+++ V ++ R+F D+RG+F +TY L G+ FVQDN S S GT+RGLH Q
Sbjct: 7 LDLPEVILVTPRRFGDARGYFCETYVKPLYAANGIVADFVQDNESLSALPGTVRGLHMQA 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQAKLVR ++G IFD+AVD+R+ SPTYG W ++A G Q+++P GFAHGF TL
Sbjct: 67 PPFAQAKLVRVLSGAIFDVAVDVRKGSPTYGRWAGARLTAEGGEQLFVPQGFAHGFCTLA 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL-DTILPSVSEKDQNLPFLNQIDSPF 179
+T V YKV FY + G+ W D + I W +TIL S+KD+ LP L DSPF
Sbjct: 127 PDTRVAYKVDAFYDRASECGIIWNDPDLAIDWRFTGETIL---SDKDRILPRLKDFDSPF 183
>gi|89068412|ref|ZP_01155815.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Oceanicola granulosus
HTCC2516]
gi|89046066|gb|EAR52125.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Oceanicola granulosus
HTCC2516]
Length = 185
Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 116/174 (66%), Gaps = 1/174 (0%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V IL+ R+F D RGWF ++++ + L+ G++ FVQDNHS+S GT+R LH+Q PP+AQ
Sbjct: 11 VLILEPRRFGDDRGWFMESWNRETLRGHGIEIDFVQDNHSYSAPKGTVRALHYQSPPHAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKLVR G + D+AVD RR SPTYG V++++SA NG Q+++P GF HGF TL + ++
Sbjct: 71 AKLVRVARGTVRDVAVDARRGSPTYGRHVAVDLSAENGRQLFVPAGFLHGFATLTPDVDL 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+YK +D Y+ + D VAW D + I W +D + ++S KD+ P SPF
Sbjct: 131 LYKCSDIYAPDCDGAVAWDDPDLGIDWG-IDPVTATLSNKDRAAPQFADWTSPF 183
>gi|73809592|gb|AAZ85717.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli]
gi|323948402|gb|EGB44386.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli H120]
gi|324119067|gb|EGC12956.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli E1167]
Length = 176
Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 116/164 (70%), Gaps = 4/164 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q PYA
Sbjct: 11 VLIFEPKVFGDERGFFFESFNQKIFEEAVGRKVEFVQDNHSKS-TKGVLRGLHYQLEPYA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRC+ G ++D+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L E
Sbjct: 70 QGKLVRCVVGEVYDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLSETAE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+YK T++Y E + G+ W DK+I+I WP++D +P +S+KD N
Sbjct: 130 FVYKTTNYYHPESERGIIWDDKNINIHWPIVD--IPILSKKDHN 171
>gi|240138979|ref|YP_002963454.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
AM1]
gi|240008951|gb|ACS40177.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
AM1]
Length = 183
Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 85/180 (47%), Positives = 113/180 (62%), Gaps = 5/180 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+ + ++ D RGWFS+ Y + +L E G+ + FVQDN SFS GTIRGLHFQ
Sbjct: 7 EIPAVKRVIPKRHGDDRGWFSEIYRADILSEHGIANAFVQDNQSFSAPAGTIRGLHFQVA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKL+R +AG I D+AVD+R +SP+YG V++ + A G Q+++P GFAHGF TLE
Sbjct: 67 PNAQAKLIRVLAGAILDVAVDLRSDSPSYGRHVAVRLDATGGEQLFVPAGFAHGFCTLEP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQIDSPF 179
+T V YKV +YS D + W D +I I WP+ D IL S KD+ P L + F
Sbjct: 127 DTMVAYKVDAYYSPADDRNLRWNDPAIGIAWPVAEADAIL---SGKDKAAPLLADLGRVF 183
>gi|326402834|ref|YP_004282915.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium multivorum
AIU301]
gi|326403405|ref|YP_004283486.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium multivorum
AIU301]
gi|325049695|dbj|BAJ80033.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium multivorum
AIU301]
gi|325050266|dbj|BAJ80604.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium multivorum
AIU301]
Length = 184
Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 116/181 (64%), Gaps = 3/181 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+++ V ++ +F DSRGWFS+T++ L LG + FVQDNHS S GTIRGLH Q
Sbjct: 5 LDLPGVMLITPPRFADSRGWFSETWNQARLAALGFTETFVQDNHSSSTRPGTIRGLHCQL 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRCI G I+D+AVDIR SP++G + E+SA NG Q++IP GF HGF T E
Sbjct: 65 APFAQGKLVRCIRGAIWDVAVDIRHGSPSFGRHAAAELSAANGRQLWIPPGFLHGFCTTE 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPF 179
+TEV+YKVT Y + GV W D + + WP+ T L +S+KD LP L + + F
Sbjct: 125 PDTEVVYKVTAPYDKASERGVIWNDPDLALPWPVPAGTAL--LSDKDNLLPRLAEAEPWF 182
Query: 180 E 180
Sbjct: 183 R 183
>gi|257792905|gb|ACV67282.1| RmlC [Escherichia coli]
Length = 181
Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 114/164 (69%), Gaps = 4/164 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ + F D RG+F ++++ K+ E +G + FVQDNHS S G +RGLH+Q+ PYA
Sbjct: 11 VLILEPKVFGDERGFFMESFNQKVFDEAVGRKVEFVQDNHSKSIK-GVLRGLHYQQEPYA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRC+ G +FD+AVDIRR+S T+G WV + +SA N Q++IP GFAHGF L E
Sbjct: 70 QGKLVRCVVGEVFDVAVDIRRDSETFGKWVGVNLSAENKKQLWIPEGFAHGFYVLSDTAE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+YK T++Y+ D G+ W DK+I+I WP++ IL +SEKD N
Sbjct: 130 FVYKATNYYNFLSDRGIIWNDKNININWPIVGDIL--LSEKDMN 171
>gi|220925351|ref|YP_002500653.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium nodulans ORS
2060]
gi|219949958|gb|ACL60350.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium nodulans ORS
2060]
Length = 184
Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 117/178 (65%), Gaps = 2/178 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+++ ++F D RGWFS+T+ + +L + G+ F+QDN SFS GT+RG+HFQ P
Sbjct: 8 IPEVKLVIPKRFGDERGWFSETFRADILAQAGITAPFIQDNQSFSAHPGTVRGIHFQTHP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQAKLVR +AG I D+AVD+RR SP+YG V++ + A G Q+YIP GF H F TLE N
Sbjct: 68 HAQAKLVRVLAGAILDVAVDLRRASPSYGRHVAVRLDAEAGHQLYIPIGFGHAFCTLEPN 127
Query: 123 TEVIYKVT-DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
T V YKV +Y+ EHD + W D ++ I WP + +S+KD+ P L+ + + F
Sbjct: 128 TMVAYKVAGGYYNREHDGNLLWNDPALGIDWP-VSAEAAVLSDKDRAAPRLSDLPALF 184
>gi|224823815|ref|ZP_03696924.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lutiella nitroferrum 2002]
gi|224604270|gb|EEG10444.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lutiella nitroferrum 2002]
Length = 181
Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 121/175 (69%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+I++ + F D RG+F ++++ K +E +G Q FVQDNHS S G +RGLH+Q P
Sbjct: 8 IPDVKIIEPQVFGDERGFFYESFNHKQFEEAIGQQVKFVQDNHSRSVK-GVLRGLHYQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQAKLVRC G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 67 PHAQAKLVRCAVGEVFDVAVDIRKSSPTFGQWVGVNLSAENKRQLWIPEGFAHGFLTLSK 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN-LPFLNQI 175
E +YK TD+Y+ E + + W D+++ I WP P++S+KD N L F +QI
Sbjct: 127 VAEFLYKTTDYYAPESERCINWNDQNLSIKWPT--GFDPTLSKKDNNGLAFTDQI 179
>gi|317132491|ref|YP_004091805.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ethanoligenens harbinense
YUAN-3]
gi|315470470|gb|ADU27074.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ethanoligenens harbinense
YUAN-3]
Length = 185
Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/179 (48%), Positives = 116/179 (64%), Gaps = 3/179 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V I++ R F D+RGWF +TYS + L LG+ FVQDN SFS GT+RGLHFQ P
Sbjct: 8 LDGVLIVEPRVFGDNRGWFMETYSKEKLAPLGVTVDFVQDNQSFSAQKGTLRGLHFQMHP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ+KL+RC G I D+AVDIR+ SP Y WV++E+SA N Q++IP GFAHGF+TL +
Sbjct: 68 KAQSKLLRCTHGAILDVAVDIRKGSPNYTKWVAVELSAENKRQLFIPAGFAHGFVTLTDD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
EV YKV ++Y+ + D + + D +I + W + IL S+KD P L D F Y
Sbjct: 128 VEVQYKVDEYYAPDCDRSIRFDDPAIGVNWGIKAPIL---SKKDLGAPLLADSDCNFTY 183
>gi|304405208|ref|ZP_07386868.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus curdlanolyticus
YK9]
gi|304346087|gb|EFM11921.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus curdlanolyticus
YK9]
Length = 181
Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 115/173 (66%), Gaps = 3/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V +++T F D RG+F+++Y+ + G+ FVQDNHS S + GT+RGLHFQ
Sbjct: 7 KLDGVLVIETNVFGDHRGFFTESYNEEKFLAAGIDYKFVQDNHSLSSEAGTVRGLHFQLA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVR +AG I+D+AVD+R++S TYG WV + +S +N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLVRVVAGAIYDVAVDLRKDSSTYGQWVGVILSESNKRQLLVPQGFAHGFCTLTP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
NT+V+YKV +YS EHD G+ W D I I WP IL S+KD+ P + +
Sbjct: 127 NTQVLYKVDAYYSQEHDRGLLWNDPDIGIEWPTDRVIL---SDKDKVHPGIRE 176
>gi|163853094|ref|YP_001641137.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
PA1]
gi|163664699|gb|ABY32066.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
PA1]
Length = 183
Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 84/180 (46%), Positives = 114/180 (63%), Gaps = 5/180 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V+ + ++ D RGWFS+ Y + +L E G+ + F+QDN SFS GTIRGLHFQ
Sbjct: 7 EISAVKRVIPKRHGDDRGWFSEIYRADILSEHGIANAFLQDNQSFSAPAGTIRGLHFQVA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKL+R +AG I D+AVD+R +SP+YG V++ + A G Q+++P GFAHGF TLE
Sbjct: 67 PNAQAKLIRVLAGAILDVAVDLRSDSPSYGRHVAVRLDATGGEQLFVPAGFAHGFCTLEP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQIDSPF 179
+T V YKV +YS D + W D +I I WP+ D IL S KD+ P L + F
Sbjct: 127 DTMVAYKVDAYYSPADDRNLRWNDPAIGIAWPVAEADAIL---SGKDKAAPLLADLGRVF 183
>gi|303230617|ref|ZP_07317367.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Veillonella atypica
ACS-049-V-Sch6]
gi|302514672|gb|EFL56664.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Veillonella atypica
ACS-049-V-Sch6]
Length = 178
Score = 171 bits (433), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 81/172 (47%), Positives = 117/172 (68%), Gaps = 3/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V IL+ R F D RG+F ++++ ++L ELG+ FVQDN SFS + GT+RG+HFQ
Sbjct: 10 KLKGVYILEPRVFGDHRGYFFESWNERVLHELGIDINFVQDNQSFSAEQGTLRGIHFQTG 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQAKLVRC+ G + D+AVD+R +S TY W+S+E+SA+N Q+ IP GF HGF+TL
Sbjct: 70 EWAQAKLVRCVRGAVLDVAVDLRADSSTYLQWISVELSADNKRQLLIPRGFGHGFVTLTP 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ E +YK +FY VE + G W D +I + W + + IL S+KD+ LPF+
Sbjct: 130 DVEFLYKADNFYHVEAEGGYRWNDPTIGVEWGIENPIL---SDKDKQLPFIK 178
>gi|319784647|ref|YP_004144123.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317170535|gb|ADV14073.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 184
Score = 171 bits (433), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 83/172 (48%), Positives = 114/172 (66%), Gaps = 1/172 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I+ V + ++ D+RG+F +TY+++ + G+ FVQDNHS+S G +RGLH+Q
Sbjct: 7 LGIDGVLEIVPKRHGDARGFFVETYNAERFSQAGIDLAFVQDNHSYSAAAGVLRGLHYQL 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KL+R I G I D+AVDIRR+S T+G WV+LE+SA G QI +P GFAHGF+TL
Sbjct: 67 APRAQDKLLRVIRGSILDVAVDIRRSSKTFGKWVALEVSAEKGNQILVPKGFAHGFVTLV 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+TEV+YKVTD YS HD + + D +I I WP L +S+KD P L
Sbjct: 127 PDTEVLYKVTDTYSQAHDRSIRFDDPAIGIEWPSLTGGF-QLSDKDLKAPLL 177
>gi|254561587|ref|YP_003068682.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
DM4]
gi|254268865|emb|CAX24826.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
DM4]
Length = 183
Score = 171 bits (433), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 85/180 (47%), Positives = 112/180 (62%), Gaps = 5/180 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+ + ++ D RGWFS+ Y + +L E G+ + FVQDN SFS GTIRGLHFQ
Sbjct: 7 EIPAVKRVIPKRHGDDRGWFSEIYRADILSEHGIANAFVQDNQSFSAPAGTIRGLHFQVA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKL+R +AG I D+AVD+R SP+YG V++ + A G Q+++P GFAHGF TLE
Sbjct: 67 PNAQAKLIRVLAGAILDVAVDLRSGSPSYGRHVAVRLDATGGEQLFVPAGFAHGFCTLEP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQIDSPF 179
+T V YKV +YS D + W D +I I WP+ D IL S KD+ P L + F
Sbjct: 127 DTMVAYKVDAYYSPADDRNLRWNDPAIGIAWPVAEADAIL---SGKDKAAPLLADLGRVF 183
>gi|9957837|gb|AAG09516.1|AF279619_4 dTDP-6-deoxy-D-glucose-3,5-epimerase [Salmonella enterica]
Length = 181
Score = 171 bits (432), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 82/168 (48%), Positives = 117/168 (69%), Gaps = 4/168 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I + + F D RG+F ++++ ++ E LG + FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVLIFEPKVFGDKRGFFMESFNQRVFDEALGHKVEFVQDNHSKS-SKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PPYAQ KLVRC+ G +FD+AVDIR++S T+G WV + +SA+N Q++IP GFAHGF L
Sbjct: 66 PPYAQGKLVRCVVGEVFDVAVDIRKDSETFGKWVGVNLSADNKKQLWIPEGFAHGFYVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E++YK T++Y++ D G+ W D+SI+I WP+ IL +SEKD N
Sbjct: 126 ETAELLYKTTNYYNLLSDRGIIWNDRSININWPISGDIL--LSEKDMN 171
>gi|260576534|ref|ZP_05844523.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sp. SW2]
gi|259021257|gb|EEW24564.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sp. SW2]
Length = 185
Score = 171 bits (432), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 87/184 (47%), Positives = 111/184 (60%), Gaps = 7/184 (3%)
Query: 1 MNINP-----VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M I P V IL +F D+RGWFS+T+++ + GL+ FVQDNHS S GT+RG
Sbjct: 1 MQIEPTALADVMILTPARFGDARGWFSETWNAARMAAAGLRADFVQDNHSMSAAVGTLRG 60
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LHFQ PP+AQ KLVRC G IFD+AVDIRR S YG WV +E++ N Q+ +P GF HG
Sbjct: 61 LHFQAPPHAQDKLVRCTRGAIFDVAVDIRRGSKGYGKWVGVELTPENRRQLLVPKGFLHG 120
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F+T +TEV YK +DFY+ + D V W ++ I W L P +S KD
Sbjct: 121 FVTRLPDTEVQYKCSDFYAPDCDGAVRWDSAALAIDWGL--DCPPILSHKDAQAVDFADF 178
Query: 176 DSPF 179
SPF
Sbjct: 179 SSPF 182
>gi|240140508|ref|YP_002964988.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
AM1]
gi|240010485|gb|ACS41711.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
AM1]
Length = 183
Score = 171 bits (432), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 111/178 (62%), Gaps = 1/178 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+ + ++ D RGWFS+ Y + +L E G+ + FVQDN SFS GTIRGLHFQ
Sbjct: 7 EIPAVKRVIPKRHGDDRGWFSEVYRADILSEHGIANAFVQDNQSFSAPAGTIRGLHFQVA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKL+R +AG I D+AVD+R +SPTYG V++ + A G Q+++P GFAHGF TLE
Sbjct: 67 PNAQAKLIRVLAGAILDVAVDLRSDSPTYGRHVAVRLDATGGEQLFVPAGFAHGFCTLEP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
T V YKV +YS D + W D +I I WP+ + +S KD+ P L + F
Sbjct: 127 ETMVAYKVDAYYSPADDRNLRWNDPAIGIEWPVAEAGA-ILSGKDKAAPLLADLGRVF 183
>gi|192360654|ref|YP_001983891.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cellvibrio japonicus Ueda107]
gi|190686819|gb|ACE84497.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cellvibrio japonicus Ueda107]
Length = 182
Score = 171 bits (432), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 114/170 (67%), Gaps = 4/170 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I + + F D RG+F +++S + +E GL+ FVQDNHS S G +RGLH+Q PP A
Sbjct: 11 VKIFEPKVFGDERGFFFESFSQRAFEEATGLKREFVQDNHSKS-SKGVLRGLHYQLPPMA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR G +FD+AVDIR++SPT+G WV + +SA+N Q++IP GFAHGF+TL E
Sbjct: 70 QGKLVRVAQGEVFDVAVDIRKSSPTFGQWVGVILSADNKRQLWIPEGFAHGFLTLSETAE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+YK T++YS H+ + W D +++I WP DT +S KD+ P L Q
Sbjct: 130 FLYKTTNYYSPSHEGSIIWSDPTLNIQWP--DTSAVQISTKDRTAPILKQ 177
>gi|78357970|ref|YP_389419.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78220375|gb|ABB39724.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 185
Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 113/173 (65%), Gaps = 3/173 (1%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKL 68
++ R F DSRG+F +++ ++L E GL + FVQDNH+ S G +RGLH Q PP AQ KL
Sbjct: 14 IRPRVFHDSRGFFLESFRARLFAEQGLPEEFVQDNHACSAQAGVVRGLHMQLPPAAQGKL 73
Query: 69 VRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128
V G +FD+A+D+R SPTYG + +SA N L+++IP GFAHG+MTLE +TE YK
Sbjct: 74 VWVTRGSVFDVALDLRTGSPTYGKAYTAVLSAANFLRLFIPRGFAHGYMTLEPHTEFQYK 133
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
V +Y+ + ++G+ W D +DI WP ++ +L S KD LP L SPF Y
Sbjct: 134 VDAYYAPQAEAGIRWDDPDLDIPWPDMEAVL---SPKDAELPRLCDFASPFVY 183
>gi|158605286|gb|ABW74896.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Sphingomonas sp. ATCC 53159]
Length = 188
Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 112/171 (65%), Gaps = 1/171 (0%)
Query: 13 KFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
K+ D RG+FS+ + +L G++ +VQDN SFS GTIRGLH Q PP+AQAKLVR +
Sbjct: 19 KYGDHRGFFSEVFKQSVLDAEGVEARWVQDNQSFSAAPGTIRGLHLQAPPFAQAKLVRVL 78
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
G IFD+AVDIRR SPTYG WV +E+SA Q+ +P G+AHGFMTL + E++YKV+
Sbjct: 79 RGAIFDVAVDIRRGSPTYGKWVGVELSAEKWNQLLVPAGYAHGFMTLVPDCEILYKVSAK 138
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
YS + + + W D + I WP + + P +SEKD + ++PF Y G
Sbjct: 139 YSKDSEMAIRWDDPDLAIAWPDIG-VEPVLSEKDAVATPFAEFNTPFFYQG 188
>gi|154247480|ref|YP_001418438.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthobacter autotrophicus
Py2]
gi|154161565|gb|ABS68781.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthobacter autotrophicus
Py2]
Length = 185
Score = 170 bits (431), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+I R F D+RG+FS+ + + ++ F+QDN S S GT+RGLHFQ P+AQ
Sbjct: 12 VKITPAR-FGDARGYFSEVFKDEWFRKNVSDSTFIQDNQSLSSTVGTVRGLHFQLDPFAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVRC AG IFD+AVDIR SPT+G WV +E++ NG Q++IP GFAHGF TL ++ +
Sbjct: 71 GKLVRCTAGAIFDVAVDIRVGSPTFGRWVGVELTPENGDQLWIPPGFAHGFATLVPDSVI 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YKVT YS HD G+ W D I I WP L T +SEKD+ P L + F Y
Sbjct: 131 FYKVTAPYSAAHDRGLLWNDPEIGIDWP-LKTGQAVLSEKDKVQPRLADLPPSFAY 185
>gi|126726120|ref|ZP_01741962.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacterales bacterium
HTCC2150]
gi|126705324|gb|EBA04415.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacterales bacterium
HTCC2150]
Length = 155
Score = 170 bits (431), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 83/147 (56%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 39 FVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEI 98
FVQDNHS S D GT+RGLHFQ PP+AQAKLVRC GR+FD+AVDIR+ SPTYG WV E+
Sbjct: 10 FVQDNHSMSADIGTVRGLHFQSPPHAQAKLVRCGRGRLFDVAVDIRKGSPTYGQWVGAEL 69
Query: 99 SANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTI 158
S NG Q+ +P GF HGF T E +TE+ YK TD+Y+ E D V + I I W L D I
Sbjct: 70 SFENGAQLLVPAGFLHGFSTREPDTEICYKCTDYYAPECDGAVRFDCPDIGIDWGLGD-I 128
Query: 159 LPSVSEKDQNLPFLNQIDSPFEYDGLP 185
+S KD P L DSPF ++G P
Sbjct: 129 EAKLSGKDAAAPVLADFDSPFVWEGTP 155
>gi|241889232|ref|ZP_04776535.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gemella haemolysans ATCC
10379]
gi|241864069|gb|EER68448.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gemella haemolysans ATCC
10379]
Length = 190
Score = 170 bits (431), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 80/181 (44%), Positives = 117/181 (64%), Gaps = 3/181 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V+I++ FED RG+F ++YS + K+LG+ FVQDNHS S + G +RGLHFQR
Sbjct: 8 LKDVKIIEPDVFEDERGFFMESYSEEKYKKLGIDFNFVQDNHSLSVEAGVVRGLHFQRGN 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KL+R + G + D+ VD+R+ SPTYG W S +S +N Q+ +P GFAHGF TL N
Sbjct: 68 AAQTKLIRVVTGEVLDVVVDLRKGSPTYGQWGSFILSEHNRRQLLVPRGFAHGFATLTPN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP--FE 180
+YK ++Y+ E D+G+A+ DK++ I W +D +S+KD+NLP + + FE
Sbjct: 128 VNFMYKCDNYYNAEADAGIAFDDKALGIDWQ-IDLSKAIISDKDRNLPTFKEFEKSNDFE 186
Query: 181 Y 181
Y
Sbjct: 187 Y 187
>gi|163851815|ref|YP_001639858.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
PA1]
gi|163663420|gb|ABY30787.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
PA1]
Length = 183
Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/179 (47%), Positives = 112/179 (62%), Gaps = 5/179 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+ + ++ D RGWFS+ Y + LL E G+ + FVQDN SFS GTIRGLHFQ P
Sbjct: 8 IPAVKRVIPKRHGDDRGWFSEVYRADLLAERGIANAFVQDNQSFSAPAGTIRGLHFQVAP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQAKL+R +AG I D+AVD+R NS +YG V++ + A G Q+++P GFAHGF TLE +
Sbjct: 68 NAQAKLIRVLAGAILDVAVDLRSNSSSYGRHVAVRLDATGGEQLFVPAGFAHGFCTLEPD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQIDSPF 179
+ V YKV +YS D + W D +I I WP+ D IL S KD+ P L + F
Sbjct: 128 SMVAYKVDAYYSPADDRNLRWNDPAIGIAWPVAEADAIL---SGKDKAAPLLADLGRVF 183
>gi|13476272|ref|NP_107842.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Mesorhizobium loti
MAFF303099]
gi|14027033|dbj|BAB53987.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Mesorhizobium loti
MAFF303099]
Length = 183
Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/176 (48%), Positives = 115/176 (65%), Gaps = 1/176 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I+ V + ++ D+RG+F +TY+++ + G+ VFVQDNHS+S G +RGLH+Q
Sbjct: 6 LGIDGVLEIVPKRHGDARGFFMETYNAERFSQAGIDLVFVQDNHSYSATAGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KL+R I G I D+AVDIRR S T+G WV+ EISA G QI +P GFAHGF+TL
Sbjct: 66 EPRAQDKLLRVIRGSILDVAVDIRRGSKTFGKWVACEISAEKGNQILVPKGFAHGFVTLV 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+TEV+YKVTD YS EHD V + D I I WP + +S+KD P L + +
Sbjct: 126 PDTEVLYKVTDTYSPEHDRSVRFDDPVIGIEWPSVAGGF-QLSDKDLKAPVLAEAE 180
>gi|295792732|gb|ADG29295.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus alvei]
Length = 183
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/161 (50%), Positives = 111/161 (68%), Gaps = 3/161 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F ++YS K L ELG+ F+QDN S S + G IRGLHFQ P AQ KL+R I+G
Sbjct: 21 DHRGFFMESYSKKKLNELGIYFNFIQDNQSLSLETGVIRGLHFQLNPKAQTKLIRVISGA 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
I+D+ VDIR++S T+G WV + +S +N Q+ +P GFAHGF TL NT+V+YKV ++YS
Sbjct: 81 IYDVIVDIRKSSSTFGQWVGVILSEHNHRQLLVPKGFAHGFCTLTPNTQVLYKVDEYYSP 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+HD G+ W D S+ I WP T P +S+KD+ LP L + +
Sbjct: 141 DHDRGIRWDDPSLGIDWP---TSKPILSDKDRLLPVLKEAE 178
>gi|283852391|ref|ZP_06369661.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio sp. FW1012B]
gi|283572239|gb|EFC20229.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio sp. FW1012B]
Length = 185
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 112/174 (64%), Gaps = 3/174 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
++K R F D+RG+F +T+S K GL FVQDNH+ S G +RGLH+QRPP QAK
Sbjct: 13 VVKPRVFGDNRGFFLETHSRKAYAAAGLDYDFVQDNHARSGPRGVLRGLHYQRPPNTQAK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G +FD+AVD+R SPTYG W +E++ +N L++ +P GFAHG++TL N E +Y
Sbjct: 73 LVWVVRGAVFDVAVDLRVGSPTYGKWYGIELTEDNFLRLMVPRGFAHGYVTLTENAEFMY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
KV YS D+G+AW D I + WP+ +P +S+KD P L SPF Y
Sbjct: 133 KVDAPYSPADDAGIAWNDPDIGVAWPV---DVPVLSDKDARQPTLAAGGSPFVY 183
>gi|148259626|ref|YP_001233753.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium cryptum JF-5]
gi|148260219|ref|YP_001234346.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium cryptum JF-5]
gi|146401307|gb|ABQ29834.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium cryptum JF-5]
gi|146401900|gb|ABQ30427.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium cryptum JF-5]
Length = 184
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 115/181 (63%), Gaps = 3/181 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+++ V ++ +F DSRGWFS+T++ L LG + FVQDNHS S GTIRGLH Q
Sbjct: 5 LDLPGVMLITPPRFADSRGWFSETWNQARLAALGFTETFVQDNHSSSTRPGTIRGLHCQL 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRCI G I+D AVDIR SP++G + E+SA NG Q++IP GF HGF T E
Sbjct: 65 APFAQGKLVRCIRGAIWDAAVDIRHGSPSFGRHAAAELSAANGRQLWIPPGFLHGFCTTE 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPF 179
+TEV+YKVT Y + GV W D + + WP+ T L +S+KD LP L + + F
Sbjct: 125 PDTEVVYKVTAPYDKASERGVIWNDPDLALPWPVPAGTAL--LSDKDNLLPRLAEAEPWF 182
Query: 180 E 180
Sbjct: 183 R 183
>gi|289549232|ref|YP_003474220.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermocrinis albus DSM 14484]
gi|289182849|gb|ADC90093.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermocrinis albus DSM 14484]
Length = 190
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/182 (47%), Positives = 113/182 (62%), Gaps = 2/182 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +++ F D RG+F + + ++ G+ FVQDNHS S G +RGLHFQ
Sbjct: 8 LEIPDVVLIRPVVFTDERGFFMEIFKRSDFEKAGIDVDFVQDNHSRS-KKGVLRGLHFQL 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ GRIFD+AVD+R SPTYG WV +E+S N L ++IP GFAHGF+TL
Sbjct: 67 EPYAQGKLVRCVKGRIFDVAVDLRSGSPTYGRWVGVELSEENHLMLWIPKGFAHGFLTLS 126
Query: 121 MNTEVIYKVTDF-YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+V+YKV+ Y E D+G+ W D I I WPL ++S KD +LPFL F
Sbjct: 127 EEADVLYKVSGAEYRPEADAGIRWNDPDIGIAWPLHLVENLTISPKDSSLPFLKDAKINF 186
Query: 180 EY 181
Y
Sbjct: 187 RY 188
>gi|330829239|ref|YP_004392191.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aeromonas veronii B565]
gi|328804375|gb|AEB49574.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aeromonas veronii B565]
Length = 183
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 115/175 (65%), Gaps = 3/175 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ KL +E +G Q FVQDNHS S G +RGLH+Q P
Sbjct: 8 IPDVLIFEPKVFGDERGFFFESFNHKLFEEAVGYQVNFVQDNHSKS-SKGVLRGLHYQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVRC+AG +FD+AVDIR++SPT+G WV + +S N Q++IP GFAHGF+TL
Sbjct: 67 PNAQGKLVRCVAGEVFDVAVDIRKSSPTFGKWVGVHLSGENKRQLWIPEGFAHGFVTLTE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK T++Y+ D G+AW D SI I WP L+ + + S KD L D
Sbjct: 127 TAEFLYKTTNYYAPVSDRGIAWNDASIGIKWPELNADILT-SAKDSTAKSLETAD 180
>gi|315499263|ref|YP_004088067.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Asticcacaulis excentricus CB
48]
gi|315417275|gb|ADU13916.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Asticcacaulis excentricus CB
48]
Length = 180
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI + +L +KF D+RG+F + + + +E FVQDN S S GTIRGLH+Q+
Sbjct: 7 NIEGLALLTPKKFGDNRGYFMEAFKAAWFRESVADVTFVQDNQSLSGQVGTIRGLHYQKL 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLVRC+ G IFD+AVDIR S T+G WV ++ +N LQ++IP GFAHGF TLE
Sbjct: 67 PCGQGKLVRCLRGAIFDVAVDIRPESSTFGQWVGETLTPDNALQLWIPEGFAHGFCTLEP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+TEV YKVT YS HD+G+A+ D I I WP +D +S+KD+ P L+ +
Sbjct: 127 DTEVFYKVTSPYSPTHDAGLAFDDPEIGIEWP-IDLAAAVLSDKDKVQPKLSSL 179
>gi|310644249|ref|YP_003949008.1| glucose-1-phosphate thymidylyltransferase [Paenibacillus polymyxa
SC2]
gi|309249200|gb|ADO58767.1| Glucose-1-phosphate thymidylyltransferase [Paenibacillus polymyxa
SC2]
Length = 182
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 118/180 (65%), Gaps = 3/180 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + +I++ D RG+F ++Y+ +++KE G+ F+QDN S S + G IRGLH+Q
Sbjct: 6 LKLEGAKIIEPVVHGDHRGFFMESYNEQIMKENGIDHAFIQDNQSLSAEAGVIRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KL+R ++G I+D+ +DIR++SPT+G WV + +S +N Q+ +P GFAHGF TL
Sbjct: 66 NPKAQTKLIRVLSGAIYDVILDIRKSSPTFGQWVGVILSEHNRRQLLVPKGFAHGFCTLV 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NT+V+YKV ++YS E+D G+ W D ++ I WP IL SEKDQ P L D F+
Sbjct: 126 PNTQVLYKVDEYYSPENDRGILWNDPALGIDWPTSHAIL---SEKDQKHPALVNADINFD 182
>gi|288816245|gb|ADC54965.1| RmlC [Escherichia coli]
Length = 183
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 114/167 (68%), Gaps = 6/167 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDC-GTIRGLHFQRPPY 63
V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S C G +RGLHFQ PP+
Sbjct: 11 VLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKS--CKGVLRGLHFQLPPF 68
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
QAKLVRCI G +FD+AVDIR NS T+G WV + +S+ N Q++IP GFAHGF+TL
Sbjct: 69 EQAKLVRCIVGEVFDVAVDIRPNSETFGSWVGVTLSSENKRQLWIPEGFAHGFLTLSEIA 128
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
E +YK ++YS H+ GV W D+ I+I WP + +S+KD NLP
Sbjct: 129 EFVYKTNNYYSSNHERGVIWNDEEINIAWPSQSEKI--LSQKDINLP 173
>gi|332295247|ref|YP_004437170.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermodesulfobium narugense
DSM 14796]
gi|332178350|gb|AEE14039.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermodesulfobium narugense
DSM 14796]
Length = 188
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/182 (47%), Positives = 117/182 (64%), Gaps = 4/182 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V I+K + F D RG+F +TY + + G+ FVQDNHS S G +RGLH+Q
Sbjct: 9 DIPEVMIVKPKVFGDERGFFLETYKREDFVKAGIYKEFVQDNHSKSVK-GVLRGLHYQLN 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVRCI G+IFD+AVDIR+NSPT+ +VS+E+S N +++P GFAHGF+TL
Sbjct: 68 PKAQGKLVRCIKGKIFDVAVDIRKNSPTFLKYVSVELSEENKFMLWVPEGFAHGFLTLSD 127
Query: 122 NTEVIYKVT-DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
E++YKV+ YS EHD + W D I I WPL P +S+KD++ P L D F
Sbjct: 128 EAEIMYKVSGSTYSPEHDRSLRWNDPEIGINWPLEGE--PILSKKDKDAPLLKNADINFV 185
Query: 181 YD 182
Y+
Sbjct: 186 YE 187
>gi|308071021|ref|YP_003872626.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase) [Paenibacillus polymyxa E681]
gi|305860300|gb|ADM72088.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase) [Paenibacillus polymyxa E681]
Length = 181
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 116/174 (66%), Gaps = 3/174 (1%)
Query: 7 RILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+I++ D RG+F ++Y+ +++KE G+ F+QDN S S + G IRGLH+Q P AQ
Sbjct: 11 KIIEPVVHGDHRGFFMESYNEQIMKENGINYAFIQDNQSLSVETGVIRGLHYQLKPKAQT 70
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KL+R ++G I+D+ +DIR++SPT+G WV + +S +N Q+ +P GFAHGF TL NT+V+
Sbjct: 71 KLIRVLSGAIYDVILDIRKSSPTFGQWVGVILSEHNRRQLLVPKGFAHGFCTLVPNTQVL 130
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
YKV ++YS E+D G+ W D ++ I WP IL SEKDQ P L D F+
Sbjct: 131 YKVDEYYSPENDRGILWNDPALGIDWPTSHAIL---SEKDQKHPVLADADINFD 181
>gi|218662620|ref|ZP_03518550.1| dTDP-4-dehydrorhamnose 3,5-epimerase protein [Rhizobium etli
IE4771]
Length = 155
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 102/154 (66%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M I + + +F D RG+FS+ + +E FVQDN S S GT+RGLHFQ
Sbjct: 1 MAIEGIVAITPPRFGDHRGYFSEVFKDAWFRENVADVTFVQDNESLSAQAGTVRGLHFQI 60
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVRC+AGRI D+ VDIR SP++G W+S E+S + G Q++IP GFAHGF T+E
Sbjct: 61 PPFAQGKLVRCLAGRIMDVVVDIRVGSPSFGKWLSQELSPDTGKQLWIPPGFAHGFATIE 120
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
N+ + YKVT YS +HD G+AW D +I I W L
Sbjct: 121 PNSVISYKVTAPYSPQHDRGIAWNDPAIGIRWAL 154
>gi|299133409|ref|ZP_07026604.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Afipia sp. 1NLS2]
gi|298593546|gb|EFI53746.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Afipia sp. 1NLS2]
Length = 180
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 114/171 (66%), Gaps = 3/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V +++ + F D+RG+F ++++ + +E FVQDN SFS G +RGLH+Q P
Sbjct: 8 LDGVMLIEPQVFHDTRGYFFESFNHQRFRESVADVPFVQDNQSFS-KKGVVRGLHYQIAP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLVR +AG IFD+AVDIRRNSP +G W + +SA+N Q+++P GFAHGF L
Sbjct: 67 KAQGKLVRVLAGEIFDVAVDIRRNSPQFGQWTGINLSADNKKQLWVPAGFAHGFQVLSET 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
EV+YK TD++S EH+ + W D ++ I WPL + P VS+KD + P L+
Sbjct: 127 AEVLYKTTDYWSAEHERAIRWNDPTLAIDWPL--KMNPVVSDKDNDAPLLS 175
>gi|9957848|gb|AAG09525.1|AF279621_4 dTDP-6-deoxy-D-glucose-3,5-epimerase [Salmonella enterica]
Length = 176
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 114/166 (68%), Gaps = 5/166 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q PYA
Sbjct: 11 VLIFEPKVFSDERGFFMESFNQKVFEEAVGPKIEFVQDNHSKS-TKGVLRGLHYQVEPYA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRCIAG +FD+AVDIR++S T+G WV + +S+ N Q++IP GFAHGF+ L E
Sbjct: 70 QGKLVRCIAGEVFDVAVDIRKDSETFGKWVGVNLSSENKRQLWIPEGFAHGFLVLSEEAE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
+YK +++YS EH+ G+ W D I+ITW + IL S KD+N P
Sbjct: 130 FVYKTSNYYSAEHERGIIWNDTDINITWGIGSPIL---SLKDKNSP 172
>gi|167770814|ref|ZP_02442867.1| hypothetical protein ANACOL_02165 [Anaerotruncus colihominis DSM
17241]
gi|167666854|gb|EDS10984.1| hypothetical protein ANACOL_02165 [Anaerotruncus colihominis DSM
17241]
Length = 184
Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 115/179 (64%), Gaps = 3/179 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V + + F D RG+F +++S ++ +E GL FVQDNHS S GT+RG+HFQR
Sbjct: 7 ELDGVYLAEPEVFGDHRGFFMESWSKRVFEEAGLFYDFVQDNHSCSTVKGTLRGIHFQRG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQAKLVRC+ G++ D+AVD+R NSP Y WV++E+SA N Q+ IP GF HGF+TL
Sbjct: 67 DKAQAKLVRCVKGKVLDVAVDLRPNSPAYKRWVAVELSAENKKQLLIPRGFGHGFLTLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
E +YK ++Y+ E D G+ W D + I W + + P +S KDQN P+L + FE
Sbjct: 127 EVEFLYKADNYYAPEADGGIRWNDPELAIDWGISE---PVLSGKDQNAPWLKDAATGFE 182
>gi|307340771|gb|ADN43834.1| RmlC [Escherichia coli]
Length = 182
Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 117/167 (70%), Gaps = 4/167 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKSCK-GVLRGLHYQLE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 67 PYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK T++Y+ +H+ + W+D ++I+WP+ + P +SEKD+N
Sbjct: 127 TAEFVYKTTNYYAAKHERCIQWKDGMLNISWPIGNA--PILSEKDRN 171
>gi|152971033|ref|YP_001336142.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|150955882|gb|ABR77912.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 184
Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 111/166 (66%), Gaps = 2/166 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I + R F D+RG+F +++SSK+ E +G Q FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPEVLIFEPRVFGDARGFFFESFSSKVFNEAVGRQVEFVQDNHSQS-QKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC+ G +FD+AVDIRR+SPT+G WV +SA N Q++IP GFAHGFM L
Sbjct: 66 DPHAQGKLVRCVEGEVFDVAVDIRRSSPTFGKWVGAVLSAENKRQLWIPEGFAHGFMALS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ +YK T++Y+ + + + W D I I WP L S+SEKD
Sbjct: 126 DTVQFVYKATNYYAPQSEQSIIWNDPEIGIDWPALSDCALSLSEKD 171
>gi|315923820|ref|ZP_07920049.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315622853|gb|EFV02805.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 188
Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 112/181 (61%), Gaps = 3/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V ++ + F D RG+F +TYS+ +G+ ++FVQDN S++ GT+RG+HFQ
Sbjct: 7 SIPGVCVVTPKVFGDRRGYFMETYSTAAFAAIGIDNIFVQDNRSYTAKKGTLRGIHFQNA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKLV + G + D+AVD+R SPTY WV E+SA N ++IP GF HGF+TL
Sbjct: 67 PMAQAKLVSVVRGTVMDVAVDLRAGSPTYRQWVGAELSAENKRMLFIPRGFGHGFVTLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ E YKV + YS EHD G+ + D +I + W + D IL SEKD P L D F Y
Sbjct: 127 DVEFAYKVDNLYSPEHDRGIRFNDPAIGVDWGIADPIL---SEKDMTSPLLADSDCNFVY 183
Query: 182 D 182
+
Sbjct: 184 E 184
>gi|46451854|gb|AAS98029.1| RmlC [Shigella boydii]
Length = 177
Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 118/173 (68%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKS-SKGVLRGLHYQLE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 67 PYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T++Y E D G+ W D I+I WP + I+ +S+KD++ P L++
Sbjct: 127 TAEFLYKTTNYYHPESDRGIIWDDSFINIQWPYAECII--LSDKDKHQPRLSR 177
>gi|157161533|ref|YP_001458851.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli HS]
gi|300946366|ref|ZP_07160644.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 116-1]
gi|301643905|ref|ZP_07243934.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 146-1]
gi|157067213|gb|ABV06468.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli HS]
gi|300453958|gb|EFK17578.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 116-1]
gi|301077725|gb|EFK92531.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 146-1]
Length = 184
Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 111/166 (66%), Gaps = 2/166 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I + R F D+RG+F +++SSK+ E +G Q FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPEVLIFEPRVFGDARGFFFESFSSKVFNEAVGRQVDFVQDNHSQS-QKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC+ G +FD+AVDIRR+SPT+G WV +SA N Q++IP GFAHGFM L
Sbjct: 66 APHAQGKLVRCVEGEVFDVAVDIRRSSPTFGKWVGAVLSAENKRQLWIPEGFAHGFMALS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ +YK T++Y+ + + + W D I I WP L S+SEKD
Sbjct: 126 DTVQFVYKATNYYAPQSERSIIWNDPEIGIDWPALSDCALSLSEKD 171
>gi|32170823|gb|AAP57699.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Sphingomonas elodea]
Length = 188
Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 111/171 (64%), Gaps = 1/171 (0%)
Query: 13 KFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
KF D RG+FS+ + L G++ +VQDN SFS GTIRGLH Q P +AQAKLVR +
Sbjct: 19 KFGDHRGFFSEVFKQSQLDAEGVEARWVQDNQSFSAAAGTIRGLHLQAPAFAQAKLVRVL 78
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
G I+D+AVDIRR SPTYG WV +E+SA Q+ +P G+AHGFMTL + E++YKV+
Sbjct: 79 PGAIYDVAVDIRRGSPTYGRWVGVELSAEKWNQLLVPAGYAHGFMTLVPDCEILYKVSAK 138
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
YS + + + W D + ITWP + + P +SEKD + ++PF Y G
Sbjct: 139 YSKDSEMAIRWDDPDLAITWPDIG-VEPVLSEKDAVATPFVEFNTPFFYQG 188
>gi|75758500|ref|ZP_00738621.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|228904956|ref|ZP_04069008.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis IBL
4222]
gi|74494027|gb|EAO57122.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|228854698|gb|EEM99304.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis IBL
4222]
Length = 194
Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/179 (48%), Positives = 113/179 (63%), Gaps = 3/179 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V I++ K D RG+F +TY+ K + L LQ FVQDN S S GTIRGLH+Q P
Sbjct: 14 LDGVFIIELDKCSDKRGYFIETYNKKKFELLDLQGEFVQDNQSLSVHTGTIRGLHYQLNP 73
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ K+V CI+G I+D+ VDIR+ SPTYG W +S N + +P GFAHGF T+E N
Sbjct: 74 KAQMKVVSCISGSIYDVVVDIRKGSPTYGQWFGTILSEYNNRLLTVPKGFAHGFCTIEPN 133
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
T V YKV ++YS H+ G+ W D++I I WP T P +SEKD+ LP L + F Y
Sbjct: 134 TIVQYKVDEYYSPNHEEGILWNDETIGIFWP---TNQPILSEKDRKLPRLKDTNINFVY 189
>gi|152971027|ref|YP_001336136.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|150955876|gb|ABR77906.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 184
Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 111/166 (66%), Gaps = 2/166 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I + R F D+RG+F +++SSK+ E +G Q FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPEVLIFEPRVFGDARGFFFESFSSKVFNEAVGRQVEFVQDNHSQS-QKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC+ G +FD+AVDIRR+SPT+G WV +SA N Q++IP GFAHGFM L
Sbjct: 66 DPHAQGKLVRCVEGEVFDVAVDIRRSSPTFGKWVGAVLSAENKRQLWIPEGFAHGFMALS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ +YK T++Y+ + + + W D I I WP L S+SEKD
Sbjct: 126 DTVQFVYKATNYYAPQSERSIIWNDPEIGIDWPALGDCALSLSEKD 171
>gi|221065027|ref|ZP_03541132.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Comamonas testosteroni KF-1]
gi|220710050|gb|EED65418.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Comamonas testosteroni KF-1]
Length = 183
Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/177 (47%), Positives = 116/177 (65%), Gaps = 3/177 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ + F D+RG+F +++ L + G F+QDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVFLIEPKVFGDARGFFLESFRQDLFNQATGTNCEFIQDNHSRS-SKGVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
PP+AQ KLVR I+G +FD+AVDIRRNSPT+G WV E+SA N Q++IP GFAHGF+ L
Sbjct: 65 LPPHAQGKLVRVISGAVFDVAVDIRRNSPTFGQWVGAELSAENHHQLWIPPGFAHGFVVL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK T +Y+ E D G+ W D + I WP LD I S+SEKD+N P Q +
Sbjct: 125 SDTADFVYKTTAYYAPESDRGLLWNDPDLGIAWPQLD-IEFSLSEKDRNQPAFKQAE 180
>gi|88604302|ref|YP_504480.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanospirillum hungatei
JF-1]
gi|88189764|gb|ABD42761.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanospirillum hungatei
JF-1]
Length = 190
Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 113/170 (66%), Gaps = 4/170 (2%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F+DSRG+F ++Y+ K G+ D FVQDNHS S G +RGLH+Q P +AQ KLVR +
Sbjct: 22 FKDSRGFFVESYNKKDFSHAGITDEFVQDNHSKS-QKGVLRGLHYQYP-HAQGKLVRVLK 79
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G I+D+AVDIR SPTYG ++ + N+ +YIP GFAHGF+ LE +TEV+YKVTD Y
Sbjct: 80 GSIYDVAVDIRIGSPTYGKPFAVTLRENDPAMLYIPVGFAHGFLALEDDTEVMYKVTDLY 139
Query: 134 SVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQIDSPFEY 181
D+G+ W D ++I WPL + P +SEKD P L+++ SPF Y
Sbjct: 140 YPSGDAGLLWNDPDLNIPWPLDIIGIKEPILSEKDTKHPILSELRSPFTY 189
>gi|197106802|ref|YP_002132179.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Phenylobacterium zucineum
HLK1]
gi|196480222|gb|ACG79750.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Phenylobacterium zucineum
HLK1]
Length = 184
Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 113/175 (64%), Gaps = 2/175 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ ++ V ++ ++ D+RGWFS+T+S + + E G++ FVQDN +F+ GT+RGLHFQ
Sbjct: 7 LALSDVLLITPKRHGDARGWFSETWSRRAMSEAGVEADFVQDNQAFNARKGTLRGLHFQA 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ Q KLVR + G I+D+AVDIR S TYG WV ++A G Q+++P GFAHG+ TL
Sbjct: 67 APHPQGKLVRVLQGAIYDVAVDIRPGSATYGRWVGATLTAEGGEQLWVPRGFAHGYCTLT 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + YKV Y+ + + GVAW D + I WPL P +SEKD+ LP L +
Sbjct: 127 DDAMLFYKVDGLYAPQTEGGVAWDDPDLAIDWPLESE--PVLSEKDKTLPRLKDL 179
>gi|168481430|gb|ACA24909.1| RmlC [Shigella dysenteriae]
Length = 182
Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 86/171 (50%), Positives = 115/171 (67%), Gaps = 3/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ + F D RG+F ++++ KL ++ + V FVQDNHS S G +RGLH+Q P
Sbjct: 8 IPEVLIIEPQIFSDERGYFFESFNQKLFDDVVNRHVEFVQDNHSRS-SKGVLRGLHYQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQAKLVRCI G +FD+AVDIR SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 67 PFAQAKLVRCIVGEVFDVAVDIRTMSPTFGHWVGVRLSAENKRQLWIPEGFAHGFLTLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
N E YK T+FY E ++G+ W D I+I WP D + +S KD LP L
Sbjct: 127 NAEFAYKTTNFYCKEAEAGIIWNDPQINIKWP-EDNMEFLLSTKDVILPCL 176
>gi|260162574|dbj|BAI43815.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Klebsiella pneumoniae]
Length = 184
Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 110/166 (66%), Gaps = 2/166 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + R F D+RG+F +++SSK+ E +G Q FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPEVLIFEPRVFGDARGFFFESFSSKVFNEAVGRQVEFVQDNHSQS-QKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC+ G +FD+AVDIRR+SPT+G WV +SA N Q++IP GFAHGFM L
Sbjct: 66 DPHAQGKLVRCVEGEVFDVAVDIRRSSPTFGKWVGAVLSAENKRQLWIPEGFAHGFMALS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ +YK T++Y+ + + + W D I I WP L S+SEKD
Sbjct: 126 DTVQFVYKATNYYAPQSERSIIWNDPEIGIDWPALSDCALSLSEKD 171
>gi|170720580|ref|YP_001748268.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida W619]
gi|169758583|gb|ACA71899.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida W619]
Length = 182
Score = 168 bits (425), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 113/168 (67%), Gaps = 4/168 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + F D RG+F +++++ + KE+ GLQ FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVFLFTPKVFGDERGFFFESFNANVFKEVTGLQPDFVQDNHSRSVK-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
PP+AQ KLVR + G +FD+AVDIRR+SPT+G WV +SA N Q++IP GFAHGF+TL
Sbjct: 65 LPPHAQGKLVRVVQGEVFDVAVDIRRSSPTFGQWVGAVLSAENKNQLWIPPGFAHGFVTL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E +YK TDFYS + +AW D I I WP+ +PS+S KDQ
Sbjct: 125 SDTAEFLYKTTDFYSPSSERCLAWNDPEIGIEWPI--DFVPSLSGKDQ 170
>gi|134046343|ref|YP_001097828.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanococcus maripaludis C5]
gi|132663968|gb|ABO35614.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanococcus maripaludis C5]
Length = 187
Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 112/181 (61%), Gaps = 4/181 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +++ + F D RG+F +TY + G+ + FVQDNHS S G +RGLHFQ
Sbjct: 8 LKIPEVILIEPKVFPDERGFFLETYKFSDFFDAGITENFVQDNHSKS-KYGVLRGLHFQN 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KLVRCI G IFD+AVD+RRNSP YG WV +S N +YIP GFAHGF L
Sbjct: 67 DPKAQGKLVRCIKGEIFDVAVDLRRNSPKYGKWVGEILSEENKKMLYIPNGFAHGFCVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
E+IYK T+ Y D+G+ W D++I I WP++D P +SEKD LP L + F
Sbjct: 127 SEAEIIYKCTEEYVPGCDAGILWNDETIGIDWPVVD---PIISEKDSLLPNLVDSNVNFR 183
Query: 181 Y 181
Y
Sbjct: 184 Y 184
>gi|50083371|ref|YP_044881.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Acinetobacter sp.
ADP1]
gi|49529347|emb|CAG67059.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Acinetobacter sp.
ADP1]
Length = 187
Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 121/181 (66%), Gaps = 8/181 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKL----LKELGLQDV--FVQDNHSFSFDCGTIRGL 56
I + I + R F D RGWF ++++ ++ L E GL D+ FVQDNHSFS G +RGL
Sbjct: 8 IKDLLIFEPRVFGDDRGWFMESFNQQVFEQALTERGL-DIPKFVQDNHSFS-KKGVLRGL 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H+Q P+AQ KLVR + GR +D+AVDIR NS T+G WV +E++A+N Q +IP GFAHGF
Sbjct: 66 HYQLNPHAQGKLVRVVQGRAWDVAVDIRENSSTFGEWVGVELTADNHKQFWIPAGFAHGF 125
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ LE NT+ +YK TD+YS E + + W D++I+I WP+ + +++KD+ P L Q D
Sbjct: 126 IALEDNTQFLYKTTDYYSKECERSIVWNDETINIEWPIEKDLEILLTDKDRLAPQLIQAD 185
Query: 177 S 177
Sbjct: 186 K 186
>gi|169342322|ref|ZP_02863393.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens C
str. JGS1495]
gi|169299547|gb|EDS81610.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens C
str. JGS1495]
Length = 189
Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 113/182 (62%), Gaps = 2/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ + F D RG+F +TYS K +E GL FVQDN S S G +RGLHFQ
Sbjct: 10 KIKDLYIIEPKVFGDERGYFMETYSQKAFEEAGLTMKFVQDNESKS-KKGVLRGLHFQ-T 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G ++D+AVD+R+ SPT+G W + +SA N Q Y+P GFAHGF+ L
Sbjct: 68 KHTQGKLVRVTQGEVWDVAVDLRKGSPTFGQWEGVHLSAENKRQFYVPEGFAHGFVVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK TDFY+ E+DSG+ W DK +++ WPL +SEKD+ L ++D PF Y
Sbjct: 128 EAVFNYKCTDFYAPEYDSGLLWNDKDVNVEWPLEGIEEIILSEKDKKQKTLKELDIPFVY 187
Query: 182 DG 183
+G
Sbjct: 188 EG 189
>gi|56965452|ref|YP_177184.1| dTDP-dehydrorhamnose 3,5-epimerase [Bacillus clausii KSM-K16]
gi|56911696|dbj|BAD66223.1| dTDP-dehydrorhamnose 3,5-epimerase [Bacillus clausii KSM-K16]
Length = 181
Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 82/172 (47%), Positives = 110/172 (63%), Gaps = 3/172 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+L+ F D RG+F ++Y+ KE+G++ F+QDNHS S GT+RGLH+Q P AQ K
Sbjct: 13 LLEPTVFGDHRGFFMESYNKDTFKEIGIEIDFIQDNHSLSQTPGTLRGLHYQLAPKAQTK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
L+R G I+D+ VDIR+ S TYG W ++A N Q+ +P GFAHGF TL NTEV Y
Sbjct: 73 LIRATKGAIYDVIVDIRKESSTYGQWQGFILTAENKRQLLVPKGFAHGFCTLVENTEVQY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
KV + YS EHD G+AW D + I WP+ + IL S+KD P L Q ++ F
Sbjct: 133 KVDELYSPEHDRGIAWDDPVLSIDWPVSNPIL---SDKDVKHPNLEQAENNF 181
>gi|114326768|ref|YP_743925.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Granulibacter bethesdensis
CGDNIH1]
gi|114314942|gb|ABI61002.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Granulibacter bethesdensis
CGDNIH1]
Length = 188
Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 111/181 (61%), Gaps = 1/181 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V ++ +F D+RG+FS+TY + E G+ FVQDNHS S GTIRGLH Q
Sbjct: 6 LAIPEVILVTPDRFGDNRGFFSETYQHRKYAEGGISGTFVQDNHSLSAQRGTIRGLHCQV 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLVRC+ G I+D+AVD R SPTYG WV+ E+SA N Q+++P GF H F TL+
Sbjct: 66 APNVQGKLVRCVRGAIWDVAVDARTGSPTYGQWVAAELSAENWQQLWVPGGFLHAFCTLQ 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+TEVIYKVT Y + GV W D +D+ WP+ + + SEKD LP + F
Sbjct: 126 PDTEVIYKVTGDYDKSAERGVIWNDAELDLPWPVAPEEVVT-SEKDLQLPPFSAAKGWFT 184
Query: 181 Y 181
Y
Sbjct: 185 Y 185
>gi|54873720|gb|AAV41069.1| RmlC [Shigella boydii]
gi|72003794|gb|AAZ65834.1| putative protein [Escherichia coli]
gi|115503038|gb|ABI98963.1| RmlC [Escherichia coli]
gi|332343819|gb|AEE57153.1| dTDP-4-dehydrorhamnose 3,5-epimerase RfbC [Escherichia coli UMNK88]
Length = 181
Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 116/174 (66%), Gaps = 4/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKS-SKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T++Y + GV W D IDI WPL+ + P +SEKD+ +L +
Sbjct: 126 ETAEFLYKTTNYYHPISERGVKWDDPCIDIKWPLVSS--PLLSEKDKCYSWLTK 177
>gi|9957853|gb|AAG09529.1|AF279622_4 dTDP-6-deoxy-D-glucose-3,5-epimerase [Salmonella enterica]
Length = 177
Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 113/168 (67%), Gaps = 4/168 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I + + F D RG+F ++++ + +E +G + FV DNHS S G +RGLH+Q PYA
Sbjct: 11 VLIFEPKVFSDERGFFMESFNQTVFEEAVGRKIEFVLDNHSKS-TKGVLRGLHYQVEPYA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRCIAG +FD+AVDIR++S T+G W+ + +S+ N Q++IP GFAHGF+ L E
Sbjct: 70 QGKLVRCIAGEVFDVAVDIRKDSETFGKWIGVNLSSENKRQLWIPEGFAHGFLVLSEEAE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+YK T+FY+ D GVAW D I I WPL++ P +S+KD PFL
Sbjct: 130 FLYKTTNFYNPRSDRGVAWNDPYIGINWPLVNN--PLLSDKDSKQPFL 175
>gi|329929651|ref|ZP_08283348.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. HGF5]
gi|328935977|gb|EGG32432.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. HGF5]
Length = 182
Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 118/180 (65%), Gaps = 3/180 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+++N I++ + DSRG+F ++Y+ L K+ G+ F+QDNHS S + G +RGLH+Q
Sbjct: 6 LSLNGAAIIEPKVHGDSRGFFMESYNESLFKQNGITYNFIQDNHSLSAEPGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KL+R + G I+D+ VDIR++S T+G W + +S +N Q+ +P GFAHGF TL
Sbjct: 66 HPKAQTKLIRVLTGAIYDVIVDIRKSSSTFGQWYGVILSEHNHRQLLVPKGFAHGFCTLV 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NT+V+YKV ++YS E+D G+ W D ++ I WP T P +S+KDQ P L + FE
Sbjct: 126 PNTQVLYKVDEYYSPENDRGILWNDPALGIDWP---TSSPILSDKDQRHPLLKDAEMNFE 182
>gi|34863497|gb|AAQ82927.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Raoultella terrigena]
Length = 184
Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 112/166 (67%), Gaps = 2/166 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I + R F D+RG+F +++SSK+ E +G + FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPEVLICEPRVFGDARGFFFESFSSKIFDEAVGRKVEFVQDNHSQS-QKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC+ G +FD+AVD+RR+SPT+G WV + +SA N Q++IP GFAHGFM L
Sbjct: 66 APHAQGKLVRCVEGEVFDVAVDVRRSSPTFGQWVGVVLSAENKRQLWIPEGFAHGFMALS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ +YK T++Y+ + + + W D I I WP L S+SEKD
Sbjct: 126 ETVQFVYKATNYYAPQSERSILWNDPQIGIEWPELSGCALSLSEKD 171
>gi|262037148|ref|ZP_06010640.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptotrichia goodfellowii
F0264]
gi|261748836|gb|EEY36183.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptotrichia goodfellowii
F0264]
Length = 190
Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 84/169 (49%), Positives = 115/169 (68%), Gaps = 6/169 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ + F DSRG+F +TY+ K +ELGL FVQDNHS S G +RGLHFQ
Sbjct: 11 IKDLVIIEPKVFGDSRGFFMETYNQKSFEELGLTMNFVQDNHSKS-KKGVLRGLHFQ-TK 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR I GR+FD+AVD+R+ S TYG W +E+S N L Y+P FAHGF+TL+ +
Sbjct: 69 HTQGKLVRVIKGRVFDVAVDLRKESETYGQWYGVELSEENKLMFYVPERFAHGFLTLDED 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD-TILP---SVSEKDQ 167
TE +Y+ TD Y+ E+DSG+ W DK+++I W + I P ++SEKDQ
Sbjct: 129 TEFVYRCTDLYAPEYDSGILWNDKTLNIDWKFEEFGINPEELTISEKDQ 177
>gi|168212616|ref|ZP_02638241.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens CPE
str. F4969]
gi|168216436|ref|ZP_02642061.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens NCTC
8239]
gi|182625737|ref|ZP_02953505.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens D
str. JGS1721]
gi|170715658|gb|EDT27840.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens CPE
str. F4969]
gi|177908999|gb|EDT71481.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens D
str. JGS1721]
gi|182381550|gb|EDT79029.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens NCTC
8239]
Length = 189
Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 113/182 (62%), Gaps = 2/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ + F D RG+F +TYS K +E GL FVQDN S S G +RGLHFQ
Sbjct: 10 KIKDLYIIEPKVFGDERGYFMETYSQKAFEEAGLTMKFVQDNESKS-KKGVLRGLHFQ-T 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G ++D+AVD+R+ SPT+G W + +SA N Q Y+P GFAHGF+ L
Sbjct: 68 KHTQGKLVRVTQGEVWDVAVDLRKGSPTFGQWEGVHLSAENKRQFYVPEGFAHGFVVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK TDFY+ E+DSG+ W DK +++ WPL +SEKD+ L ++D PF Y
Sbjct: 128 EAVFNYKCTDFYAPEYDSGLLWNDKDVNVEWPLEGIEEIILSEKDKKQKTLKELDIPFIY 187
Query: 182 DG 183
+G
Sbjct: 188 EG 189
>gi|71065772|ref|YP_264499.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Psychrobacter arcticus 273-4]
gi|71038757|gb|AAZ19065.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Psychrobacter arcticus 273-4]
Length = 190
Score = 167 bits (423), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 112/174 (64%), Gaps = 6/174 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYSSK----LLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPP 62
IL+ R FED RGWF ++++ K LL E G + FVQDNHS S G +RGLH+Q P
Sbjct: 13 ILEPRVFEDDRGWFMESFNHKSFTTLLNERGFEAPNFVQDNHSSS-QKGALRGLHYQLNP 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQAKLVR + GR +D+AVDIR++SPT+G WV +E++A N Q +IP GFAHGF+ LE N
Sbjct: 72 FAQAKLVRVVQGRAWDVAVDIRQHSPTFGQWVGIELTATNHRQFWIPAGFAHGFIALEDN 131
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
T+ +YK T +Y E + + W D S+DI WP+ L + Q F I+
Sbjct: 132 TQFLYKTTSYYHKESERTILWNDDSLDINWPVEGLELKLTEKDHQGATFTQAIE 185
>gi|83310573|ref|YP_420837.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzyme
[Magnetospirillum magneticum AMB-1]
gi|82945414|dbj|BAE50278.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzyme
[Magnetospirillum magneticum AMB-1]
Length = 184
Score = 167 bits (422), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 102/149 (68%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +L+ +F DSRGWF +++S + +E GL ++DN S SF GT+RGLHFQRPP AQ
Sbjct: 11 VLLLRPARFSDSRGWFMESWSHQAFREAGLDTEVIKDNVSLSFKTGTVRGLHFQRPPMAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKL+ +GR+ D+AVD+R S TYG +S+E+SA G ++IP GFAHGF TLE NT V
Sbjct: 71 AKLISVYSGRVLDVAVDLRPGSATYGRHLSVELSAAEGTMLFIPKGFAHGFCTLEDNTLV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
YKV YS EH+ + W+D + I WP+
Sbjct: 131 GYKVDAPYSPEHEGAIHWRDPDLGIVWPV 159
>gi|157158061|ref|YP_001463389.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli E24377A]
gi|157080091|gb|ABV19799.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli E24377A]
Length = 182
Score = 167 bits (422), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 80/169 (47%), Positives = 114/169 (67%), Gaps = 4/169 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKSCK-GVLRGLHYQLE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 67 PYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
E +YK T++Y E D G+ W D+ + ITWP + + ++S KDQ P
Sbjct: 127 TAEFVYKTTNYYHPESDRGIRWDDEELSITWPRGNEL--NLSNKDQQHP 173
>gi|117624234|ref|YP_853147.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli
APEC O1]
gi|237704492|ref|ZP_04534973.1| RmlC [Escherichia sp. 3_2_53FAA]
gi|300936658|ref|ZP_07151562.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 21-1]
gi|115513358|gb|ABJ01433.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli
APEC O1]
gi|226900858|gb|EEH87117.1| RmlC [Escherichia sp. 3_2_53FAA]
gi|300458239|gb|EFK21732.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 21-1]
gi|323951790|gb|EGB47664.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli H252]
Length = 182
Score = 167 bits (422), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 117/175 (66%), Gaps = 4/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKS-SKGVLRGLHYQLE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVRC+ G +FD+AVDIR++S T+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 67 PYAQGKLVRCVVGEVFDVAVDIRKSSSTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK T++Y + D G+ W D SI+I+WP+ +L +S KD P L +I+
Sbjct: 127 TAEFLYKTTNYYHPQSDRGIKWDDPSINISWPVDSQVL--LSAKDNKHPPLTKIE 179
>gi|315649766|ref|ZP_07902849.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus vortex V453]
gi|315274740|gb|EFU38121.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus vortex V453]
Length = 182
Score = 167 bits (422), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 77/180 (42%), Positives = 119/180 (66%), Gaps = 3/180 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+++N +++ + D RG+F ++Y+ L K+ G+ F+QDN S S + G +RGLH+Q
Sbjct: 6 LSLNDALLIEPKVHGDHRGFFMESYNDSLFKQHGITYNFIQDNQSLSAEAGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KL+R + G I+D+ VDIR++SPT+G WV + +S +N Q+ +P GFAHGF TL
Sbjct: 66 NPKAQTKLIRVLTGAIYDVIVDIRKSSPTFGKWVGVILSEHNHRQLLVPKGFAHGFCTLV 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NT+V+YKV ++YS E+D G+ W+D ++ I WP T P +S+KDQ P L + F+
Sbjct: 126 PNTQVLYKVDEYYSPENDRGILWKDPALGIDWP---TSNPILSDKDQQHPLLKDAEMNFD 182
>gi|323960875|gb|EGB56495.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli H489]
Length = 183
Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 108/156 (69%), Gaps = 2/156 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ KL +E +G FVQDNHS S G +RGLH+Q P
Sbjct: 8 IPGVLIFEPKVFGDERGFFFESFNHKLFEEAVGYPVTFVQDNHSKS-SKGVLRGLHYQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVRC+AG +FD+AVDIR++SP++G WV + +S N Q++IP GFAHGF+TL
Sbjct: 67 PHAQGKLVRCVAGEVFDVAVDIRKSSPSFGQWVGVHLSGENKRQLWIPEGFAHGFVTLTE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDT 157
+ E +YK T++Y+ D G+AW D +I I WP L
Sbjct: 127 SAEFLYKTTNYYAPASDRGIAWNDPTIGIRWPELKA 162
>gi|228994849|ref|ZP_04154646.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus pseudomycoides DSM
12442]
gi|228764896|gb|EEM13653.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus pseudomycoides DSM
12442]
Length = 171
Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/168 (47%), Positives = 110/168 (65%), Gaps = 3/168 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F D+RG+F ++Y+ K+L+ LG+ FVQDN S+S + G IRGLHFQ P AQ KLV+ I
Sbjct: 2 FHDARGYFKESYNEKVLRHLGIHHKFVQDNTSYSKEAGVIRGLHFQLEPRAQTKLVQVIQ 61
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G IFD+ VD+R+ SPTY W S ++ +N + +P GFAHGF TL +T V YKV +FY
Sbjct: 62 GAIFDVIVDLRKGSPTYKKWQSFLLTGDNHRLLLVPKGFAHGFCTLVPHTIVHYKVDEFY 121
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
DSG+AW D+ I+WP+ + P +SEKD LP N+ F++
Sbjct: 122 DASCDSGIAWNDEEFAISWPVSN---PVLSEKDGMLPKFNETTHYFQF 166
>gi|323936932|gb|EGB33215.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli E1520]
Length = 178
Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 113/163 (69%), Gaps = 4/163 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S + G +RGLH+Q PYA
Sbjct: 11 VLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKS-NKGVLRGLHYQLEPYA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L E
Sbjct: 70 QGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLSETAE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+YK T++Y E D G+ W D+ I+I WP + P +S+KD+
Sbjct: 130 FLYKTTNYYHPESDRGIIWNDQDINIIWP--NIAEPLLSDKDK 170
>gi|260162548|dbj|BAI43790.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Klebsiella pneumoniae]
Length = 184
Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 110/166 (66%), Gaps = 2/166 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + R F D+RG+F +++SSK+ E +G Q FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPRVFGDARGFFFESFSSKVFNEAVGRQVDFVQDNHSQS-QKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC+ G +FD+AVDIRR+SPT+G WV +SA N Q++IP GFAHGFM L
Sbjct: 66 DPHAQGKLVRCVEGEVFDVAVDIRRSSPTFGKWVGAVLSAENKRQLWIPEGFAHGFMALS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ +YK T++Y+ + + + W D I I WP L S+SEKD
Sbjct: 126 DTVQFVYKATNYYAPQSERSIIWNDPEIGIDWPALGDCALSLSEKD 171
>gi|229825468|ref|ZP_04451537.1| hypothetical protein GCWU000182_00828 [Abiotrophia defectiva ATCC
49176]
gi|229790031|gb|EEP26145.1| hypothetical protein GCWU000182_00828 [Abiotrophia defectiva ATCC
49176]
Length = 193
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 117/175 (66%), Gaps = 2/175 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + +++ + F D+RGWF +++S K +E+G+ FVQDNHSFS GT+RGLHFQ+
Sbjct: 13 IGGLFVIEPKVFGDNRGWFMESWSKKKFEEVGINCEFVQDNHSFSEKKGTLRGLHFQKGE 72
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+QAKLVR + GR++D+AVD+R++SPT+ W +E+S N ++++P GFAHGF+TL N
Sbjct: 73 YSQAKLVRVLRGRVYDVAVDLRKDSPTFLNWFGVELSEENKKELFVPRGFAHGFLTLTDN 132
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS--VSEKDQNLPFLNQI 175
E YK ++Y+ E + + + D+ I + W L D + VS+KD+ P ++
Sbjct: 133 VEFAYKADNYYNKESEGAIRFDDEKIGVDWKLADLGVGEVIVSDKDKTAPGFEEL 187
>gi|110799633|ref|YP_695051.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens ATCC
13124]
gi|110800202|ref|YP_694935.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens ATCC
13124]
gi|168211917|ref|ZP_02637542.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens B
str. ATCC 3626]
gi|110674280|gb|ABG83267.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens ATCC
13124]
gi|110674849|gb|ABG83836.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens ATCC
13124]
gi|170710141|gb|EDT22323.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens B
str. ATCC 3626]
Length = 189
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 113/182 (62%), Gaps = 2/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ + F D RG+F +TYS K +E GL FVQDN S S G +RGLHFQ
Sbjct: 10 KIKDLYIIEPKVFGDERGYFMETYSQKAFEEAGLTMKFVQDNESKS-KKGVLRGLHFQ-T 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G ++D+AVD+R+ SPT+G W + +SA N Q Y+P GFAHGF+ L
Sbjct: 68 KHTQGKLVRVTQGEVWDVAVDLRKGSPTFGQWEGVHLSAENKRQFYVPEGFAHGFVVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK TDFY+ E+DSG+ W DK +++ WPL +SEKD+ L ++D PF Y
Sbjct: 128 EAVFNYKCTDFYAPEYDSGLLWNDKYVNVEWPLEGIEEIILSEKDKKQKTLKELDIPFIY 187
Query: 182 DG 183
+G
Sbjct: 188 EG 189
>gi|154707208|ref|YP_001423502.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii Dugway
5J108-111]
gi|154356494|gb|ABS77956.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii Dugway
5J108-111]
Length = 189
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 115/183 (62%), Gaps = 2/183 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M I V ++K + F D RG+F +T+ + G+ F+QDNHS S G +RGLH+Q
Sbjct: 8 MPIPEVILIKPKVFTDDRGFFIETFKQSDFRRHGINGEFLQDNHSLSMKKGVLRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVR + G++FD+AVD+RR SPT+G WVS E+S+ N ++IP GFAHG + LE
Sbjct: 68 DPHAQGKLVRVVLGKVFDVAVDLRRESPTFGKWVSTELSSTNNHMLWIPPGFAHGMLVLE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NT ++YK T Y E + + W D I+I WP+ + +L +SEKD FL + + +
Sbjct: 128 ENTHLLYKCTAEYVPESERYIRWDDPDINIKWPIKNNLL--LSEKDAAGVFLQRAEINAQ 185
Query: 181 YDG 183
Y G
Sbjct: 186 YHG 188
>gi|16765424|ref|NP_461039.1| dTDP-4,deoxyrhamnose 3,5 epimerase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|141363|sp|P26394|RMLC_SALTY RecName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; AltName:
Full=Thymidine diphospho-4-keto-rhamnose 3,5-epimerase;
AltName: Full=dTDP-4-keto-6-deoxyglucose 3,5-epimerase;
AltName: Full=dTDP-6-deoxy-D-xylo-4-hexulose
3,5-epimerase; AltName: Full=dTDP-L-rhamnose synthase
gi|7767043|pdb|1DZR|A Chain A, Rmlc From Salmonella Typhimurium
gi|7767044|pdb|1DZR|B Chain B, Rmlc From Salmonella Typhimurium
gi|7767045|pdb|1DZT|A Chain A, Rmlc From Salmonella Typhimurium
gi|7767046|pdb|1DZT|B Chain B, Rmlc From Salmonella Typhimurium
gi|581655|emb|CAA40118.1| rmlC [Salmonella enterica]
gi|16420626|gb|AAL20998.1| dTDP-4,deoxyrhamnose 3,5 epimerase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|261247309|emb|CBG25134.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267994148|gb|ACY89033.1| dTDP-4,deoxyrhamnose 3,5 epimerase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301158655|emb|CBW18167.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|323130417|gb|ADX17847.1| dTDP-4,deoxyrhamnose 3,5 epimerase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|332989029|gb|AEF08012.1| dTDP-4,deoxyrhamnose 3,5 epimerase [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 183
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/173 (47%), Positives = 112/173 (64%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ + +EL G + FVQDNHS S +RGLHFQR
Sbjct: 9 IPDVLILEPKVFGDERGFFFESYNQQTFEELIGRKVTFVQDNHSKS-KKNVLRGLHFQRG 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 68 ENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T++YS + + W D++I I WP + LP +S KD P L+Q
Sbjct: 128 YAEFLYKATNYYSPSSEGSILWNDEAIGIEWPF--SQLPELSAKDAAAPLLDQ 178
>gi|85707416|ref|ZP_01038497.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseovarius sp. 217]
gi|85668072|gb|EAQ22952.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseovarius sp. 217]
Length = 155
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 30 LKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPT 89
+ E GL FVQDNHS S GTIRGLHFQ PP+AQAKLVRC G ++D+AVDIRR SPT
Sbjct: 1 MAEAGLTIDFVQDNHSLSEKVGTIRGLHFQSPPHAQAKLVRCGRGALYDVAVDIRRGSPT 60
Query: 90 YGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSID 149
YG WV +++S NG Q+ +P GF HGF+T E TE+IYK +D+Y+ E D V + D I
Sbjct: 61 YGHWVGVDLSFENGRQLLVPEGFLHGFVTREPMTEIIYKCSDYYAPECDGAVRFDDPEIG 120
Query: 150 ITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
ITW + + +S+KD P L SPFE+ G
Sbjct: 121 ITWGVEGESV-VLSDKDAKAPLLRDFVSPFEFVG 153
>gi|303244741|ref|ZP_07331071.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanothermococcus
okinawensis IH1]
gi|302484875|gb|EFL47809.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanothermococcus
okinawensis IH1]
Length = 185
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/180 (47%), Positives = 118/180 (65%), Gaps = 6/180 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDC-GTIRGLHFQR 60
I V ++K + F D RG+F +TY + +++G+ F+QDNHS S C G +RGLHFQ+
Sbjct: 9 KIPEVILIKPKVFGDERGFFLETYKKEDFEKVGINGEFIQDNHSKS--CYGVLRGLHFQK 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQAK+VRCI G I+D+AVD+RR+SPT+G WV +S N Q+YIP GFAHGF L
Sbjct: 67 EPYAQAKIVRCIRGVIYDVAVDLRRSSPTFGQWVGAVLSEYNKHQLYIPRGFAHGFCVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
EV+YKV + Y+ E++ GV W D I I W L+D P +S+KD+ L ++D E
Sbjct: 127 GEAEVVYKVDNKYAPEYECGVIWNDGDIGIDW-LIDE--PILSDKDKQWHTLKELDKKGE 183
>gi|168481341|gb|ACA24827.1| RmlC [Escherichia coli]
gi|320198728|gb|EFW73328.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli EC4100B]
Length = 177
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 118/173 (68%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKSCK-GVLRGLHYQLE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 67 PYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T++Y E D G+ W D I+I WP + I+ +S+KD++ P L++
Sbjct: 127 TAEFLYKTTNYYHPESDRGIIWDDSFINIQWPYDECII--LSDKDKHQPGLSR 177
>gi|167991009|ref|ZP_02572108.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168242167|ref|ZP_02667099.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|194451405|ref|YP_002046144.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|197261750|ref|ZP_03161824.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|194409709|gb|ACF69928.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|197240005|gb|EDY22625.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|205330504|gb|EDZ17268.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205338551|gb|EDZ25315.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|312913085|dbj|BAJ37059.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321224742|gb|EFX49805.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
Length = 182
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/173 (47%), Positives = 112/173 (64%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ + +EL G + FVQDNHS S +RGLHFQR
Sbjct: 8 IPDVLILEPKVFGDERGFFFESYNQQTFEELIGRKVTFVQDNHSKS-KKNVLRGLHFQRG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 67 ENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T++YS + + W D++I I WP + LP +S KD P L+Q
Sbjct: 127 YAEFLYKATNYYSPSSEGSILWNDEAIGIEWPF--SQLPELSAKDAAAPLLDQ 177
>gi|264678894|ref|YP_003278801.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Comamonas testosteroni CNB-2]
gi|262209407|gb|ACY33505.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Comamonas testosteroni CNB-2]
Length = 185
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/183 (46%), Positives = 119/183 (65%), Gaps = 4/183 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ + F D+RG+F +++ L + G F+QDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVFLIEPKVFGDARGFFLESFRQDLFNQATGTNYEFIQDNHSRS-SKGVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
PP+AQ KLVR I+G +FD+AVDIRR+SPT+G WV E+SA N Q++IP GFAHGF+ L
Sbjct: 65 LPPHAQGKLVRVISGAVFDVAVDIRRSSPTFGQWVGAELSAENHRQLWIPPGFAHGFVVL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ +YK T +Y+ E D G+ W D I I WP LD I S+SEKD++ P Q + F
Sbjct: 125 SDTADFVYKTTAYYAPESDRGLLWNDPDITIAWPQLD-IEFSLSEKDRHQPAFKQAEV-F 182
Query: 180 EYD 182
E D
Sbjct: 183 EKD 185
>gi|205353237|ref|YP_002227038.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207857530|ref|YP_002244181.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|205273018|emb|CAR37966.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|206709333|emb|CAR33673.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|326623928|gb|EGE30273.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|326628324|gb|EGE34667.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 183
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/173 (47%), Positives = 112/173 (64%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ + +EL G + FVQDNHS S +RGLHFQR
Sbjct: 9 IPDVLILEPKVFGDERGFFFESYNQQTFEELIGRKVTFVQDNHSKS-KKNVLRGLHFQRG 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 68 ENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T++YS + + W D++I I WP + LP +S KD P L+Q
Sbjct: 128 YAEFLYKATNYYSPSSEGSILWNDETIGIEWPF--SQLPELSAKDAAAPLLHQ 178
>gi|9957867|gb|AAG09540.1|AF279625_4 dTDP-6-deoxy-D-glucose-3,5-epimerase [Salmonella enterica]
Length = 179
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 119/171 (69%), Gaps = 7/171 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q PYA
Sbjct: 11 VLIFEPKVFSDERGFFMESFNQKVFEEAVGRKIEFVQDNHSKS-TKGVLRGLHYQVEPYA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRC AG +FD+AVDIR++S T+G WV + IS+ N Q++IP GFAHGF+ L + +
Sbjct: 70 QGKLVRCTAGEVFDVAVDIRKDSETFGKWVGVNISSENKRQLWIPEGFAHGFLVLSDSAD 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLP-FLN 173
+YK +++YS H+ G+ W D +I+I WP+ +D IL SEKD LP F+N
Sbjct: 130 FLYKTSNYYSPVHERGIVWNDPTININWPINIDKIL---SEKDTILPKFIN 177
>gi|331668735|ref|ZP_08369583.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli TA271]
gi|331063929|gb|EGI35840.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli TA271]
Length = 179
Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 116/173 (67%), Gaps = 6/173 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDC-GTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S C G +RGLH+Q
Sbjct: 8 IPDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKS--CKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
E +YK T++Y E D G+ W D S+ I WPL +T P +S +D+ L+
Sbjct: 126 ETAEFLYKTTNYYHPESDRGIIWNDPSLKIEWPLDNT--PVLSARDKAHSILD 176
>gi|29655125|ref|NP_820817.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii RSA 493]
gi|161830572|ref|YP_001597662.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii RSA 331]
gi|29542394|gb|AAO91331.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii RSA 493]
gi|161762439|gb|ABX78081.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii RSA 331]
Length = 189
Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 115/183 (62%), Gaps = 2/183 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M I V ++K + F D RG+F +T+ + G+ F+QDNHS S G +RGLH+Q
Sbjct: 8 MLIPEVILIKPKVFTDDRGFFIETFKQSDFRRHGINGEFLQDNHSLSMKKGVLRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVR + G++FD+AVD+RR SPT+G WVS E+S+ N ++IP GFAHG + LE
Sbjct: 68 DPHAQGKLVRVVLGKVFDVAVDLRRESPTFGKWVSTELSSTNNHMLWIPPGFAHGMLVLE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NT ++YK T Y E + + W D I+I WP+ + +L +SEKD FL + + +
Sbjct: 128 ENTHLLYKCTAEYVPESERYIRWDDPDINIKWPIKNNLL--LSEKDAAGVFLQRAEINAQ 185
Query: 181 YDG 183
Y G
Sbjct: 186 YHG 188
>gi|161613226|ref|YP_001587191.1| hypothetical protein SPAB_00936 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167551040|ref|ZP_02344795.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|198246059|ref|YP_002216181.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|161362590|gb|ABX66358.1| hypothetical protein SPAB_00936 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197940575|gb|ACH77908.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|205324010|gb|EDZ11849.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
Length = 182
Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/173 (47%), Positives = 112/173 (64%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ + +EL G + FVQDNHS S +RGLHFQR
Sbjct: 8 IPDVLILEPKVFGDERGFFFESYNQQTFEELIGRKVTFVQDNHSKS-KKNVLRGLHFQRG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 67 ENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T++YS + + W D++I I WP + LP +S KD P L+Q
Sbjct: 127 YAEFLYKATNYYSPSSEGSILWNDETIGIEWPF--SQLPELSAKDAAAPLLHQ 177
>gi|162149146|ref|YP_001603607.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gluconacetobacter
diazotrophicus PAl 5]
gi|209545110|ref|YP_002277339.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gluconacetobacter
diazotrophicus PAl 5]
gi|161787723|emb|CAP57319.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gluconacetobacter
diazotrophicus PAl 5]
gi|209532787|gb|ACI52724.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gluconacetobacter
diazotrophicus PAl 5]
Length = 183
Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/172 (47%), Positives = 109/172 (63%), Gaps = 5/172 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I + +L R+F D RG+FS+TY+ + + + G+ FVQDNHS S G IRGLH Q
Sbjct: 6 LSIPDILLLTPRRFADERGFFSETYNLRTMAQAGIDVAFVQDNHSLSRQRGVIRGLHCQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVRC G I+D+AVD R+ SP++G WV+ E+S NG Q++IP GF HGF TL
Sbjct: 66 PPHAQGKLVRCTRGAIWDVAVDARQGSPSFGRWVAAELSEENGSQLWIPPGFLHGFCTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL--DTILPSVSEKDQNLP 170
N EV YK TD + + + V W + I WP+ D +L SEKD P
Sbjct: 126 ENAEVQYKCTDLWDRDCERSVRWNSPDLAIAWPVAPEDAVL---SEKDAAAP 174
>gi|288816201|gb|ADC54925.1| RmlC [Escherichia coli]
Length = 182
Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 117/175 (66%), Gaps = 4/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKS-SKGVLRGLHYQLE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVRC+ G +FD+AVDIR++S T+G WV + +SA N Q++IP G+AHGF+ L
Sbjct: 67 PYAQGKLVRCVVGEVFDVAVDIRKSSSTFGKWVGVNLSAENKRQLWIPEGYAHGFLVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK T++Y + D G+ W D SI+I+WP+ +L +S KD P L +I+
Sbjct: 127 TAEFLYKTTNYYHPQSDRGIKWDDPSINISWPVDSQVL--LSAKDNKHPPLTKIE 179
>gi|312142996|ref|YP_003994442.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Halanaerobium sp.
'sapolanicus']
gi|311903647|gb|ADQ14088.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Halanaerobium sp.
'sapolanicus']
Length = 183
Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/175 (46%), Positives = 110/175 (62%), Gaps = 3/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + IL F D RGWF ++YS K +ELG+ F+QDN+S+S G +RGLHFQ
Sbjct: 7 KIQGLYILSADVFADQRGWFMESYSLKKFRELGIDINFIQDNYSYSKKRGVLRGLHFQTE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ+KLVRCI GRI DIAVD+R+ S TY + +S N Q+ IP GFAHGF+ LE
Sbjct: 67 PKAQSKLVRCIKGRILDIAVDLRKESLTYKKHCKVLLSQKNKKQLLIPKGFAHGFICLED 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
TEV YKV ++Y EH+ + + D ++I W + + IL S KD+N P L ++
Sbjct: 127 ETEVYYKVDEYYFPEHEKSIFYNDPELNIDWEIENVIL---SNKDKNAPLLKDLE 178
>gi|24113423|ref|NP_707933.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Shigella flexneri 2a str.
301]
gi|30063489|ref|NP_837660.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Shigella flexneri 2a str.
2457T]
gi|110806007|ref|YP_689527.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Shigella flexneri 5 str.
8401]
gi|331658118|ref|ZP_08359080.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli TA206]
gi|585832|sp|P37780|RMLC_SHIFL RecName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; AltName:
Full=Thymidine diphospho-4-keto-rhamnose 3,5-epimerase;
AltName: Full=dTDP-4-keto-6-deoxyglucose 3,5-epimerase;
AltName: Full=dTDP-6-deoxy-D-xylo-4-hexulose
3,5-epimerase; AltName: Full=dTDP-L-rhamnose synthase
gi|294899|gb|AAA53682.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Shigella flexneri]
gi|454901|emb|CAA50770.1| rfbD [Shigella flexneri]
gi|24052446|gb|AAN43640.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Shigella flexneri 2a str.
301]
gi|30041742|gb|AAP17469.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Shigella flexneri 2a str.
2457T]
gi|110615555|gb|ABF04222.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella flexneri 5 str.
8401]
gi|187880659|gb|ACD37161.1| RmlC [Escherichia coli]
gi|187880668|gb|ACD37169.1| RmlC [Escherichia coli]
gi|281601491|gb|ADA74475.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella flexneri 2002017]
gi|313649925|gb|EFS14345.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella flexneri 2a str.
2457T]
gi|331056366|gb|EGI28375.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli TA206]
gi|332756671|gb|EGJ87020.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella flexneri K-671]
gi|332756809|gb|EGJ87154.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella flexneri 2747-71]
gi|332766383|gb|EGJ96592.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella flexneri 2930-71]
gi|333002420|gb|EGK21982.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella flexneri K-218]
gi|333002550|gb|EGK22111.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella flexneri VA-6]
gi|333003378|gb|EGK22922.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella flexneri K-272]
gi|333017072|gb|EGK36393.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella flexneri K-304]
gi|333017208|gb|EGK36528.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella flexneri K-227]
Length = 181
Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 113/167 (67%), Gaps = 5/167 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKS-TKGVLRGLHYQLE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF L
Sbjct: 67 PYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFCVLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK +FYS + G+ W DKSI+I WP+ + P +S+KD N
Sbjct: 127 EAEFVYKTNNFYSKMQERGILWSDKSINIEWPVQN---PLLSDKDIN 170
>gi|187880677|gb|ACD37177.1| RmlC [Escherichia coli]
Length = 181
Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 113/167 (67%), Gaps = 5/167 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKSTK-GVLRGLHYQLE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF L
Sbjct: 67 PYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFCVLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK +FYS + G+ W DKSI+I WP+ + P +S+KD N
Sbjct: 127 EAEFVYKTNNFYSKMQERGILWSDKSINIEWPVQN---PLLSDKDIN 170
>gi|150400816|ref|YP_001324582.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanococcus aeolicus
Nankai-3]
gi|150013519|gb|ABR55970.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanococcus aeolicus
Nankai-3]
Length = 185
Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/179 (48%), Positives = 117/179 (65%), Gaps = 4/179 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V ++K + F D RG+F +TY + + G++ FVQDNHS S G +RGLHFQ+
Sbjct: 9 KISEVILIKPKIFGDERGFFLETYEKEDFENAGIKGEFVQDNHSKSCH-GVLRGLHFQKE 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQAK+VRCI G IFD+AVD+R +SPT+G WV + +S N Q+YIP GFAHGF L
Sbjct: 68 PYAQAKIVRCIKGVIFDVAVDLRGSSPTFGQWVGVVLSEYNKHQLYIPRGFAHGFCVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
EV+YKV + Y+ E + GV W D+ I I W L+D P +S+KD+ L ++D E
Sbjct: 128 EAEVVYKVDNKYAPECECGVIWNDEDIGIDW-LIDE--PILSDKDKQWHTLKELDEKGE 183
>gi|115503048|gb|ABI98972.1| RmlC [Escherichia coli]
Length = 177
Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/170 (46%), Positives = 114/170 (67%), Gaps = 4/170 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I + + F D RG+F ++++ K+ + +G + FVQDNHS S G +RGLH+Q PYA
Sbjct: 11 VLIFEPKVFGDERGFFFESFNQKVFEVAVGRKVEFVQDNHSKS-RKGVLRGLHYQLEPYA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L E
Sbjct: 70 QGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLSETAE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+YK T++Y E D G+ W DK I++ WP + + +S KD+ LP L +
Sbjct: 130 FLYKTTNYYHPESDRGIIWDDKFINVEWPPYENYI--LSAKDKTLPPLTK 177
>gi|73809580|gb|AAZ85706.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli]
Length = 178
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 113/165 (68%), Gaps = 4/165 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKS-SKGVLRGLHYQLE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 67 PYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ +YK T++Y E +SG+ W D +IDI WP+ + P +S KD
Sbjct: 127 TADFLYKTTNYYHPESESGLLWNDYTIDIAWPIENE--PLLSAKD 169
>gi|264680360|ref|YP_003280270.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Comamonas testosteroni CNB-2]
gi|262210876|gb|ACY34974.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Comamonas testosteroni CNB-2]
Length = 183
Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/177 (46%), Positives = 115/177 (64%), Gaps = 3/177 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ + F D+RG+F +++ L + G F+QDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVFLIEPKVFGDARGFFLESFRQDLFNQATGTNHEFIQDNHSRS-SKGVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P+AQ KLVR I+G +FD+AVDIRR+SPT+G WV E+SA N Q++IP GFAHGF+ L
Sbjct: 65 LSPHAQGKLVRVISGTVFDVAVDIRRSSPTFGQWVGAELSAENHRQLWIPPGFAHGFVVL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK T +Y+ E D G+ W D I I WP LD I S+SEKD+N P Q +
Sbjct: 125 SDTADFVYKTTAYYAPESDRGLLWNDPDIAIAWPQLD-IEFSLSEKDRNQPAFKQAE 180
>gi|153206209|ref|ZP_01945472.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii 'MSU Goat
Q177']
gi|212217811|ref|YP_002304598.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii CbuK_Q154]
gi|120577339|gb|EAX33963.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii 'MSU Goat
Q177']
gi|212012073|gb|ACJ19453.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii CbuK_Q154]
Length = 189
Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 115/183 (62%), Gaps = 2/183 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M I V ++K++ F D RG+F +T+ + G+ F+QDNHS S G +RGLH+Q
Sbjct: 8 MPIPEVILIKSKVFTDDRGFFIETFKQSDFRRHGINGEFLQDNHSLSMKKGVLRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVR + G++FD+AVD+RR SPT+G WVS E+S+ N ++IP GFAHG + LE
Sbjct: 68 DPHAQGKLVRVVLGKVFDVAVDLRRESPTFGKWVSTELSSTNNHMLWIPPGFAHGMLVLE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NT ++YK T Y + + W D I+I WP+ + +L +SEKD FL + + +
Sbjct: 128 ENTHLLYKCTAEYVPASERYIRWDDPDINIKWPIKNNLL--LSEKDAAGVFLQRAEINAQ 185
Query: 181 YDG 183
Y G
Sbjct: 186 YHG 188
>gi|168236252|ref|ZP_02661310.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|194734639|ref|YP_002115183.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|194710141|gb|ACF89362.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197290480|gb|EDY29835.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
Length = 182
Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 112/173 (64%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ + +E +G + FVQDNHS S +RGLHFQR
Sbjct: 8 IPDVLILEPKVFGDERGFFFESYNQQTFEESIGRKVTFVQDNHSKS-KKNVLRGLHFQRG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 67 ENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T++YS + + W D++I I WP + LP +S KD P L+Q
Sbjct: 127 YAEFLYKATNYYSPSSEGSILWNDETIGIEWPF--SQLPELSAKDAAAPLLHQ 177
>gi|9957818|gb|AAG09501.1|AF279615_4 dTDP-6-deoxy-D-glucose-3,5-epimerase [Salmonella enterica]
Length = 179
Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 119/171 (69%), Gaps = 7/171 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q PYA
Sbjct: 11 VLIFEPKVFSDERGFFMESFNQKVFEEAVGRKIEFVQDNHSKS-TKGVLRGLHYQVEPYA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRCIAG +FD+AVDIR++S T+G WV + IS+ N ++IP GFAHGF+ L + +
Sbjct: 70 QGKLVRCIAGEVFDVAVDIRKDSETFGKWVGVNISSENKRPLWIPEGFAHGFLVLSDSAD 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLP-FLN 173
+YK +++YS H+ G+ W D +I+I WP+ +D IL SEKD LP F+N
Sbjct: 130 FLYKTSNYYSPIHERGIVWNDPTININWPINIDKIL---SEKDTILPKFIN 177
>gi|291562823|emb|CBL41639.1| dTDP-4-dehydrorhamnose 3,5-epimerase [butyrate-producing bacterium
SS3/4]
Length = 191
Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 112/182 (61%), Gaps = 5/182 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M I + +++ F D RG+F +TY+ KE GL VFVQDN S S G +RGLHFQ+
Sbjct: 14 MVIEGLHVIEPTVFNDERGYFMETYNQNDFKEAGLNMVFVQDNQSMSVK-GVLRGLHFQK 72
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+ Q KLVR + G +FD+AVD+R +S TYG W +E+SA N Q YIP GFAHGF+ L
Sbjct: 73 Q-FPQGKLVRAVRGTVFDVAVDLRTHSKTYGKWFGVELSAENKKQFYIPEGFAHGFVVLS 131
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
E YK TDFY + G+AW D++I + WP+ + +SEKDQ P +I F+
Sbjct: 132 DEAEFAYKCTDFYHPGDEGGLAWNDETIGVKWPITPDMQLIISEKDQKWPGFKEI---FK 188
Query: 181 YD 182
+D
Sbjct: 189 FD 190
>gi|16588697|gb|AAL26875.1|AF315583_4 dTDP-6-deoxy-D-glucose-3,5-epimerase [Acinetobacter calcoaceticus]
Length = 186
Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 112/170 (65%), Gaps = 6/170 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYS----SKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLH 57
I + IL F D RGWF ++++ ++ L+ELGL FVQDNHS S G +RGLH
Sbjct: 8 IEGLLILHPNVFGDDRGWFMESFNQQRFAQALEELGLSVPTFVQDNHSLS-QKGVLRGLH 66
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
+Q PYAQ KLVR + GR++D+AVDIR +S TYG WV +E+SA N +IP GFAHGF+
Sbjct: 67 YQNAPYAQGKLVRVVQGRVWDVAVDIRPDSKTYGEWVGVELSAENKTMFWIPEGFAHGFI 126
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+LE NT+ +YK T++Y+ E + + W D ++ I WPL VS+KDQ
Sbjct: 127 SLEDNTQFLYKTTNYYNKESEGAIIWNDPTLAIDWPLAKVDEVLVSDKDQ 176
>gi|168818217|ref|ZP_02830217.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205344842|gb|EDZ31606.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|320086526|emb|CBY96297.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 176
Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 109/158 (68%), Gaps = 2/158 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVLIFEPKVFSDERGFFMESFNQKVFEEAVGRKIEFVQDNHSKS-TKGVLRGLHYQVE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVRCIAG +FD+AVDIR++S T+G WV + IS+ N Q++IP GFAHGF+ L
Sbjct: 67 PYAQGKLVRCIAGEVFDVAVDIRKDSETFGKWVGVNISSENKRQLWIPEGFAHGFLVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL 159
E +YK +++YS EH+ G+ W D I+ITW + IL
Sbjct: 127 EAEFVYKTSNYYSGEHERGIIWNDPDINITWGIDSPIL 164
>gi|331647689|ref|ZP_08348781.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli M605]
gi|330911875|gb|EGH40385.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli AA86]
gi|331043413|gb|EGI15551.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli M605]
Length = 179
Score = 165 bits (417), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 109/152 (71%), Gaps = 2/152 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVLIFEPKVFGDERGFFFESFNQKIFEEAVGRKVEFVQDNHSKS-RKGVLRGLHYQLE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+TL+
Sbjct: 67 PYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLTLKD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP 153
NTE++YK T +YS E++ + W D+ + I WP
Sbjct: 127 NTEILYKTTSYYSPEYERSIIWNDEDLVIKWP 158
>gi|16761026|ref|NP_456643.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29141278|ref|NP_804620.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|25292478|pir||AC0767 dTDP-4-dehydrorhamnose 3,5-epimerase [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503324|emb|CAD02457.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29136904|gb|AAO68469.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 183
Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 112/173 (64%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ + +E +G + FVQDNHS S +RGLHFQR
Sbjct: 9 IPDVLILEPKVFGDERGFFFESYNQQTFEESIGRKVTFVQDNHSKS-KKNVLRGLHFQRG 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 68 ENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T++YS + + W D++I I WP + LP +S KD P L+Q
Sbjct: 128 YAEFLYKATNYYSPSSEGSILWNDETIGIEWPF--SQLPELSAKDAAAPLLHQ 178
>gi|315640669|ref|ZP_07895773.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus italicus DSM
15952]
gi|315483565|gb|EFU74057.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus italicus DSM
15952]
Length = 193
Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 116/178 (65%), Gaps = 3/178 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+I++ F D RG+F+++YS K KE G+ F+QDNHS S + G +RGLHFQ+ AQ
Sbjct: 14 VKIIEPVVFGDHRGFFTESYSDKDFKEAGIDFDFIQDNHSLSTEPGVLRGLHFQKGQAAQ 73
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KL+R + G + D+ VDIR+ SPTYG W +SA+N Q+ +P G+AHGF+TL N
Sbjct: 74 TKLIRVVTGAVLDVIVDIRKGSPTYGEWEGYILSASNHRQLLVPKGYAHGFVTLTDNVNF 133
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS--PFEY 181
+YK ++Y+ E D G+A+ D + ITWP +D +SEKD++ P L + ++ PF Y
Sbjct: 134 LYKCDNYYNAEADGGIAFDDPELAITWP-IDQSKAILSEKDKHHPTLKEFEAENPFVY 190
>gi|56413002|ref|YP_150077.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197361930|ref|YP_002141567.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56127259|gb|AAV76765.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197093407|emb|CAR58862.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 180
Score = 164 bits (416), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 112/173 (64%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ + +E +G + FVQDNHS S +RGLHFQR
Sbjct: 6 IPDVLILEPKVFGDERGFFFESYNQQTFEESIGRKVTFVQDNHSKS-KKNVLRGLHFQRG 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 65 ENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T++YS + + W D++I I WP + LP +S KD P L+Q
Sbjct: 125 YAEFLYKATNYYSPSSEGSILWNDETIGIEWPF--SQLPELSAKDAAAPLLHQ 175
>gi|197248407|ref|YP_002147052.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197212110|gb|ACH49507.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
Length = 182
Score = 164 bits (416), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 112/173 (64%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ + +E +G + FVQDNHS S +RGLHFQR
Sbjct: 8 IPDVLILEPKVFGDERGFFFESYNQQTFEESIGRKVTFVQDNHSKS-KKNVLRGLHFQRG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 67 ENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T++YS + + W D++I I WP + LP +S KD P L+Q
Sbjct: 127 YAEFLYKATNYYSPSSEGSILWNDEAIGIEWPF--SQLPELSAKDAAAPLLHQ 177
>gi|213052828|ref|ZP_03345706.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213419660|ref|ZP_03352726.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213425548|ref|ZP_03358298.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213620978|ref|ZP_03373761.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213650448|ref|ZP_03380501.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213852951|ref|ZP_03382483.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|289807299|ref|ZP_06537928.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
gi|289827039|ref|ZP_06545847.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
Length = 182
Score = 164 bits (416), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 112/173 (64%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ + +E +G + FVQDNHS S +RGLHFQR
Sbjct: 8 IPDVLILEPKVFGDERGFFFESYNQQTFEESIGRKVTFVQDNHSKS-KKNVLRGLHFQRG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 67 ENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T++YS + + W D++I I WP + LP +S KD P L+Q
Sbjct: 127 YAEFLYKATNYYSPSSEGSILWNDETIGIEWPF--SQLPELSAKDAAAPLLHQ 177
>gi|165918222|ref|ZP_02218308.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii RSA 334]
gi|165918082|gb|EDR36686.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii RSA 334]
Length = 189
Score = 164 bits (415), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 114/183 (62%), Gaps = 2/183 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M I V ++K + F D RG+F +T+ + G+ F+QDNHS S G +RGLH+Q
Sbjct: 8 MPIPEVILIKPKVFTDDRGFFIETFKQSDFRRHGINGEFLQDNHSLSMKKGVLRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVR + G++FD+AVD+RR SPT+G WVS E+S+ N ++IP GFAHG + LE
Sbjct: 68 DPHAQGKLVRVVLGKVFDVAVDLRRESPTFGKWVSTELSSTNNHMLWIPPGFAHGMLVLE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NT ++YK T Y + + W D I+I WP+ + +L +SEKD FL + + +
Sbjct: 128 ENTHLLYKCTAEYVPASERYIRWDDPDINIKWPIKNNLL--LSEKDAAGVFLQRAEINAQ 185
Query: 181 YDG 183
Y G
Sbjct: 186 YHG 188
>gi|254853034|ref|ZP_05242382.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes FSL
R2-503]
gi|300765929|ref|ZP_07075902.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes FSL
N1-017]
gi|258606382|gb|EEW18990.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes FSL
R2-503]
gi|300513391|gb|EFK40465.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes FSL
N1-017]
Length = 186
Score = 164 bits (415), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 110/174 (63%), Gaps = 3/174 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+++K + F D RG+F ++Y+ K E+G+ F+QDNHS S + G +RG+H+Q P AQ
Sbjct: 11 VKLVKPKVFGDHRGFFMESYNEKAFHEVGIDMKFIQDNHSLSVEAGVLRGMHYQTNPKAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KL+R G I+D+ VD+R+ SPTYG W +S N Q+ +P GFAHGF T+ N V
Sbjct: 71 TKLIRVATGAIYDVVVDMRKGSPTYGEWEGYILSEANKHQLLVPQGFAHGFCTITENVNV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+YKV YS E+D+G+A+ D ++ITWP IL S+KD P L ++ F
Sbjct: 131 LYKVDQLYSPENDAGIAYDDPDLNITWPTDKLIL---SDKDTKHPRLKDAENNF 181
>gi|228946127|ref|ZP_04108462.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228813540|gb|EEM59826.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 194
Score = 164 bits (415), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 85/179 (47%), Positives = 112/179 (62%), Gaps = 3/179 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V I++ K D RG+F +T + K + L LQ FVQDN S S GTIRGLH+Q P
Sbjct: 14 LDGVFIIELDKCSDKRGYFIETCNKKKFELLDLQGDFVQDNQSLSVHTGTIRGLHYQLNP 73
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ K+V CI+G I+D+ VDIR+ SPTYG W +S N + +P GFAHGF T E N
Sbjct: 74 KAQMKVVSCISGSIYDVVVDIRKGSPTYGQWFGTILSEYNNRLLTVPKGFAHGFCTTEPN 133
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
T V YKV ++YS +H+ G+ W D++I I WP T P +SEKD+ LP L + F Y
Sbjct: 134 TIVQYKVDEYYSPKHEGGILWNDETIGIFWP---TNQPILSEKDRKLPRLKDTNVNFVY 189
>gi|198275009|ref|ZP_03207541.1| hypothetical protein BACPLE_01168 [Bacteroides plebeius DSM 17135]
gi|198272456|gb|EDY96725.1| hypothetical protein BACPLE_01168 [Bacteroides plebeius DSM 17135]
Length = 187
Score = 164 bits (415), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 85/184 (46%), Positives = 113/184 (61%), Gaps = 6/184 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F+D+RG+F +++S + +E + FVQDN S S G +RGLHFQRPP
Sbjct: 8 IEGVVIIEPRIFKDARGYFFESFSQREFEEKVGKINFVQDNESMS-SYGVMRGLHFQRPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q+KLVRC+ G + D+AVDIR+ SPTYG V++E++ +N Q +IP GFAHGF L
Sbjct: 67 YTQSKLVRCVKGAVLDVAVDIRKGSPTYGQHVAVELTEDNHRQFFIPQGFAHGFAVLSET 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPFE 180
YK +FY E D G++ D S+ I W P IL SEKD P L DSPFE
Sbjct: 127 AIFQYKCDNFYHPEADGGISILDDSLGIDWRIPTEHAIL---SEKDTKHPLLKDFDSPFE 183
Query: 181 YDGL 184
+
Sbjct: 184 FGAF 187
>gi|22759341|gb|AAC70776.2| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase [Klebsiella pneumoniae]
Length = 184
Score = 164 bits (415), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 111/166 (66%), Gaps = 2/166 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I + R F D+RG+F +++SSK+ E +G Q FVQDNHS S +RGLH+Q
Sbjct: 7 DIPDVLIFEPRVFGDARGFFFESFSSKVFNEAVGRQVEFVQDNHSQS-QKRVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC+ G +FD+AVDIRR+SPT+G WV +SA N Q++IP GFAHGFM L
Sbjct: 66 DPHAQGKLVRCVEGEVFDVAVDIRRSSPTFGKWVGAVLSAENKRQLWIPEGFAHGFMALS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ +YK T++Y+ + + + W D I I WP L + S+SEKD
Sbjct: 126 DTVQFVYKGTNYYAPQSERSIIWNDPEIRIDWPALSDCVLSLSEKD 171
>gi|239503785|ref|ZP_04663095.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Acinetobacter
baumannii AB900]
Length = 188
Score = 164 bits (415), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 114/171 (66%), Gaps = 8/171 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKL----LKELGLQDV--FVQDNHSFSFDCGTIRGL 56
I + IL+ + F D RGWF ++++ K L E GL D+ FVQDNHS S G +RGL
Sbjct: 8 IKGLLILEPKVFGDDRGWFMESFNQKAFEQALHERGL-DIPQFVQDNHSLS-QKGVLRGL 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H+Q PYAQ KLVR + G+ +D+AVDIR++SPT+G WV +E++ N Q +IP GFAHGF
Sbjct: 66 HYQLNPYAQGKLVRVVQGKAWDVAVDIRKSSPTFGQWVGVELTGENHKQFWIPAGFAHGF 125
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+ LE NT+ +YK T++Y+ E + + W D SI I WPL + VS+KD+
Sbjct: 126 VALEDNTQFLYKTTNYYNKESEGAIVWNDPSIAIDWPLSNINQVLVSDKDK 176
>gi|212211866|ref|YP_002302802.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii CbuG_Q212]
gi|212010276|gb|ACJ17657.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii CbuG_Q212]
Length = 189
Score = 164 bits (415), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 114/183 (62%), Gaps = 2/183 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M I V ++K + F D RG+F +T+ + G+ F+QDNHS S G +RGLH+Q
Sbjct: 8 MPIPEVILIKPKVFTDDRGFFIETFKQSDFRRHGINGEFLQDNHSLSMKKGVLRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVR + G++FD+AVD+RR SPT+G WVS E+ + N ++IP GFAHG + LE
Sbjct: 68 DPHAQGKLVRVVLGKVFDVAVDLRRESPTFGKWVSTELCSTNNHMLWIPPGFAHGILVLE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NT ++YK T Y E + + W D I+I WP+ + +L +SEKD FL + + +
Sbjct: 128 ENTHLLYKCTAEYVPESERYIRWDDPDINIKWPIKNNLL--LSEKDAAGVFLQRAEINAQ 185
Query: 181 YDG 183
Y G
Sbjct: 186 YHG 188
>gi|168259602|ref|ZP_02681575.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168466248|ref|ZP_02700118.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|194442370|ref|YP_002041364.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194401033|gb|ACF61255.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|195631440|gb|EDX50000.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|205351188|gb|EDZ37819.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
Length = 182
Score = 164 bits (415), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 112/173 (64%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ + ++L G + FVQDNHS S +RGLHFQR
Sbjct: 8 IPDVLILEPKVFGDERGFFFESYNQQTFEKLIGRKITFVQDNHSKS-KKNVLRGLHFQRG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 67 ANAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T++YS + + W D++I I WP + LP +S KD P L+Q
Sbjct: 127 YAEFLYKATNYYSPSSEGSILWNDETIGIEWPF--SQLPELSAKDAAAPLLDQ 177
>gi|160896725|ref|YP_001562307.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Delftia acidovorans SPH-1]
gi|160362309|gb|ABX33922.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Delftia acidovorans SPH-1]
Length = 182
Score = 164 bits (414), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 113/171 (66%), Gaps = 3/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +++ + F D RG+F ++++ + + G FVQDNHS S G +RGLH+Q P
Sbjct: 8 IPEVMLIEPKVFGDDRGFFLESFNQQAFNQATGTDHQFVQDNHSRS-KKGVLRGLHYQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVR + G +FD+AVDIR+ SPT+G WV E++ +N Q+++P GFAHGFM L
Sbjct: 67 PHAQGKLVRVVRGAVFDVAVDIRKGSPTFGQWVGAELTEDNHRQLWVPPGFAHGFMVLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ + +YK T FY+ + D G+AW D +I + WP LD L S+S+KD P L
Sbjct: 127 SADFLYKATAFYAPQADRGIAWDDPAIGVQWPQLDVEL-SLSDKDLKQPLL 176
>gi|308187468|ref|YP_003931599.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pantoea vagans C9-1]
gi|308057978|gb|ADO10150.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pantoea vagans C9-1]
Length = 181
Score = 164 bits (414), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 111/167 (66%), Gaps = 5/167 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I + F D RG+F +++S K +G FVQDNHS S G +RGLH+Q
Sbjct: 7 KIPDVKIFEPAVFGDERGFFFESFSQKKFDNAVGRHVEFVQDNHSKS-SKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC+AG +FD+AVDIR+ SP +G WV +E+S+ N Q++IP GFAHGF+TL
Sbjct: 66 NPFAQGKLVRCVAGAVFDVAVDIRKQSPFFGQWVGVELSSENKRQLWIPEGFAHGFLTLI 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
NTE +YK T+FYS E + + W D I+I WP + +L SEKD+
Sbjct: 126 DNTEFVYKTTNFYSKESERSIIWNDPLINIEWPEKEVLL---SEKDK 169
>gi|228912334|ref|ZP_04076029.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis IBL
200]
gi|228847317|gb|EEM92276.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis IBL
200]
Length = 194
Score = 164 bits (414), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 85/179 (47%), Positives = 111/179 (62%), Gaps = 3/179 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V I++ K D RG+F +T + K + L LQ FVQDN S S GTIRGLH+Q P
Sbjct: 14 LDGVFIIELDKCSDKRGYFIETCNKKKFELLDLQGDFVQDNQSLSVHTGTIRGLHYQLNP 73
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ K+V CI+G I+D+ VDIR+ SPTYG W +S N + +P GFAHGF T E N
Sbjct: 74 KAQMKVVSCISGSIYDVVVDIRKGSPTYGQWFGTILSEYNNRLLTVPKGFAHGFCTTEPN 133
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
T V YKV ++YS H+ G+ W D++I I WP T P +SEKD+ LP L + F Y
Sbjct: 134 TIVQYKVDEYYSPNHEGGILWNDETIGIFWP---TNQPILSEKDKKLPRLKDTNVNFVY 189
>gi|324114029|gb|EGC08002.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia fergusonii B253]
Length = 178
Score = 164 bits (414), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 115/170 (67%), Gaps = 5/170 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q PYA
Sbjct: 11 VLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKS-SKGVLRGLHYQLEPYA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+TL E
Sbjct: 70 QGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFITLSNIAE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD-QNLPFLN 173
IYK T FY+ + +AW D ++I W + LP VS+KD + LPF N
Sbjct: 130 FIYKTTQFYNPSFERVIAWDDPVLNINWNIKQ--LPFVSKKDMKGLPFSN 177
>gi|96669|pir||S23343 hypothetical protein 7.0 - Salmonella choleraesuis
gi|46986|emb|CAA43075.1| rmlC [Salmonella enterica]
Length = 176
Score = 164 bits (414), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 108/158 (68%), Gaps = 2/158 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVLIFEPKVFSDERGFFMESFNQKVFEEAVGRKIEFVQDNHSKS-TKGVLRGLHYQVE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVRCIAG +FD+AVDIR +S T+G WV + IS+ N Q++IP GFAHGF+ L
Sbjct: 67 PYAQGKLVRCIAGEVFDVAVDIRNDSETFGKWVGVNISSENKRQLWIPEGFAHGFLVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL 159
E +YK +++YS EH+ G+ W D I+ITW + IL
Sbjct: 127 EAEFVYKTSNYYSGEHERGIIWNDPDINITWGIDSPIL 164
>gi|182416967|ref|ZP_02948348.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium butyricum 5521]
gi|237666125|ref|ZP_04526112.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182379143|gb|EDT76645.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium butyricum 5521]
gi|237658215|gb|EEP55768.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 183
Score = 164 bits (414), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 115/180 (63%), Gaps = 5/180 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V I++ + F D RGWF +TYS+ E+ FVQDN S+S G +RG+HFQ
Sbjct: 8 LDGVYIVEPQVFGDERGWFMETYSAIKTPEIACN--FVQDNQSYSKGKGILRGIHFQNGE 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQAKLVRC+ G + D+AVD+R+ SPTY WV++E+SA N Q++IP GF HGF+TL +
Sbjct: 66 HAQAKLVRCVKGAVLDVAVDLRKGSPTYKKWVAVELSAENKKQLFIPRGFGHGFVTLSDD 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
E +YK ++Y+ E+D + + D I + W + + IL SEKD+ P L D F Y+
Sbjct: 126 VEFVYKTDNYYNYENDRSIKFDDPEIGVEWGIKNPIL---SEKDKKAPLLIDSDCTFVYE 182
>gi|224540703|ref|ZP_03681242.1| hypothetical protein BACCELL_05617 [Bacteroides cellulosilyticus
DSM 14838]
gi|224517670|gb|EEF86775.1| hypothetical protein BACCELL_05617 [Bacteroides cellulosilyticus
DSM 14838]
Length = 190
Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 116/182 (63%), Gaps = 6/182 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N+ + I++ R F+D RG+F +++S + +E + FVQDN S S G +RGLHFQ+P
Sbjct: 7 NVEGLVIIEPRLFKDERGYFFESFSQREFEEKVHKVNFVQDNESMS-SYGVLRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR + GR+ D+AVDIR+ SPTYG V++E+S +N LQ +IP GFAHGF L
Sbjct: 66 PFAQSKLVRVVKGRVLDVAVDIRKGSPTYGEHVAVELSEDNHLQFFIPKGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPF 179
YK ++Y+ + D G++ D+ I I W P IL SEKD P L +SPF
Sbjct: 126 VAVFQYKCDNYYAPQADGGISILDEGIGIDWKIPTDKAIL---SEKDTKHPLLRDFESPF 182
Query: 180 EY 181
EY
Sbjct: 183 EY 184
>gi|82543416|ref|YP_407363.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella boydii Sb227]
gi|16611726|gb|AAL27313.1|AF402312_5 dTDP-6-deoxy-D-glucose-3,5 epimerase [Shigella boydii]
gi|81244827|gb|ABB65535.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella boydii Sb227]
gi|167410112|gb|ABZ79716.1| RmlC [Escherichia coli]
gi|332097110|gb|EGJ02093.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella boydii 3594-74]
Length = 189
Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 117/183 (63%), Gaps = 3/183 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EISDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKS-SKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC G +FD+AVDIR++SPT+G WV + +SA N Q++IP G AHGF+ L
Sbjct: 66 EPYAQGKLVRCAVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGLAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
E +YK T++Y E D G+ W D ID+ WP L P +S KD+ ++ + +
Sbjct: 126 ETAEFLYKTTNYYHPESDRGIIWDDPDIDVKWP-LSIHKPILSIKDEKQKMFKEMIALEK 184
Query: 181 YDG 183
++G
Sbjct: 185 WNG 187
>gi|260890572|ref|ZP_05901835.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptotrichia hofstadii F0254]
gi|260859814|gb|EEX74314.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptotrichia hofstadii F0254]
Length = 190
Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 115/169 (68%), Gaps = 6/169 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ + F D RG+F +TY+ K +ELGL FVQDNHS S G +RGLHFQ
Sbjct: 11 IKDLVIIEPKVFGDERGFFMETYNQKSFEELGLTMNFVQDNHSKS-KKGVLRGLHFQ-TK 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR I G ++D+AVD+R+ S T+G W ++++SA N L Y+P GFAHGF+TLE
Sbjct: 69 HTQGKLVRVIKGSVYDVAVDLRKGSETFGKWYAVKLSAENKLMFYVPEGFAHGFLTLEDE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD-TILP---SVSEKDQ 167
TE +Y+ TD Y+ E+DSG+ W DK+++I W + I P ++SEKD+
Sbjct: 129 TEFVYRCTDLYAPEYDSGLLWSDKTLNIDWKFEEFEINPNELTISEKDK 177
>gi|114799033|ref|YP_759507.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hyphomonas neptunium ATCC
15444]
gi|114739207|gb|ABI77332.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hyphomonas neptunium ATCC
15444]
Length = 193
Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 108/162 (66%), Gaps = 3/162 (1%)
Query: 13 KFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
+ D RGWFS+TY+ G+ FVQDN S S GT+RGLHFQ+PP+ Q KLVRC+
Sbjct: 19 RHTDGRGWFSETYNRSAFFAAGIDFEFVQDNQSRSEKAGTVRGLHFQKPPHEQVKLVRCL 78
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
GRI D+ VDIR SP +G + ++E+SA NG Q+ IP GFAHGF +L+ E+ YKV+
Sbjct: 79 QGRILDLVVDIRPGSPRFGKFTAVELSAINGRQLLIPAGFAHGFCSLDDGCEIYYKVSAH 138
Query: 133 YSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLN 173
Y+ + D+GVA+ D I I WP D+++ +S+KD+ LP L
Sbjct: 139 YAPQSDAGVAFDDPEIGIHWPFPTDSLI--LSDKDRRLPALK 178
>gi|16803122|ref|NP_464607.1| hypothetical protein lmo1082 [Listeria monocytogenes EGD-e]
gi|47094940|ref|ZP_00232553.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes str.
1/2a F6854]
gi|224500276|ref|ZP_03668625.1| hypothetical protein LmonF1_11619 [Listeria monocytogenes Finland
1988]
gi|224502604|ref|ZP_03670911.1| hypothetical protein LmonFR_08794 [Listeria monocytogenes FSL
R2-561]
gi|254823648|ref|ZP_05228649.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes FSL
J1-194]
gi|254828460|ref|ZP_05233147.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes FSL
N3-165]
gi|254830148|ref|ZP_05234803.1| hypothetical protein Lmon1_02265 [Listeria monocytogenes 10403S]
gi|254898744|ref|ZP_05258668.1| hypothetical protein LmonJ_02975 [Listeria monocytogenes J0161]
gi|254911767|ref|ZP_05261779.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes J2818]
gi|254936093|ref|ZP_05267790.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes F6900]
gi|255521991|ref|ZP_05389228.1| hypothetical protein LmonocFSL_12347 [Listeria monocytogenes FSL
J1-175]
gi|284801414|ref|YP_003413279.1| hypothetical protein LM5578_1165 [Listeria monocytogenes 08-5578]
gi|284994556|ref|YP_003416324.1| hypothetical protein LM5923_1119 [Listeria monocytogenes 08-5923]
gi|16410484|emb|CAC99160.1| lmo1082 [Listeria monocytogenes EGD-e]
gi|47016558|gb|EAL07478.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes str.
1/2a F6854]
gi|258600856|gb|EEW14181.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes FSL
N3-165]
gi|258608683|gb|EEW21291.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes F6900]
gi|284056976|gb|ADB67917.1| hypothetical protein LM5578_1165 [Listeria monocytogenes 08-5578]
gi|284060023|gb|ADB70962.1| hypothetical protein LM5923_1119 [Listeria monocytogenes 08-5923]
gi|293589719|gb|EFF98053.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes J2818]
gi|293592871|gb|EFG00632.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes FSL
J1-194]
Length = 186
Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 109/174 (62%), Gaps = 3/174 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+++K + F D RG+F ++Y+ K E G+ F+QDNHS S + G +RG+H+Q P AQ
Sbjct: 11 VKLVKPKVFGDHRGFFMESYNEKAFHEAGIDMKFIQDNHSLSVEAGVLRGMHYQTNPKAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KL+R G I+D+ VD+R+ SPTYG W +S N Q+ +P GFAHGF T+ N V
Sbjct: 71 TKLIRVATGAIYDVVVDMRKGSPTYGEWEGYILSEANKHQLLVPQGFAHGFCTITENVNV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+YKV YS E+D+G+A+ D ++ITWP IL S+KD P L ++ F
Sbjct: 131 LYKVDQLYSPENDAGIAYDDPDLNITWPTDKLIL---SDKDTKHPRLKDAENNF 181
>gi|168229416|ref|ZP_02654474.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|194469870|ref|ZP_03075854.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194456234|gb|EDX45073.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|205335685|gb|EDZ22449.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
Length = 182
Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 112/173 (64%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ + ++L G + FVQDNHS S +RGLHFQR
Sbjct: 8 IPDVLILEPKVFGDERGFFFESYNQQTFEKLIGRKITFVQDNHSKS-KKNVLRGLHFQRG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 67 ANAQGKLVRCAIGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T++YS + + W D++I I WP + LP +S KD P L+Q
Sbjct: 127 YAEFLYKATNYYSPSSEGSILWNDETIGIEWPF--SQLPELSAKDAAAPLLHQ 177
>gi|317153812|ref|YP_004121860.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio aespoeensis
Aspo-2]
gi|316944063|gb|ADU63114.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio aespoeensis
Aspo-2]
Length = 190
Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 114/176 (64%), Gaps = 1/176 (0%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+L+ R F+D RG+F ++YS + +G+ FVQDNH++S D +RG HFQ PP+AQAK
Sbjct: 13 VLEPRVFQDERGFFLESYSRETFSRVGIDCEFVQDNHAYSRDVCVLRGFHFQLPPHAQAK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV G + D+ VD+R+ SPT+G + +SA N +++IP GF H ++T+ +TE +Y
Sbjct: 73 LVWVTRGAVLDVVVDLRKGSPTFGKCQHVILSAANFKRMFIPRGFGHAYVTIMPDTEFLY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITW-PLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
KV Y +H+ G+AW D I W P LD +P +SEKD+ L FL + DSPF ++
Sbjct: 133 KVDAPYRPDHECGLAWNDPDIGFDWSPALDGRMPVLSEKDRRLGFLAEFDSPFTHE 188
>gi|218660783|ref|ZP_03516713.1| dTDP-4-dehydrorhamnose 3,5-epimerase protein [Rhizobium etli
IE4771]
Length = 156
Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/138 (53%), Positives = 96/138 (69%)
Query: 13 KFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
+F D RG+FS+ + +E FVQDN S S GT+RGLHFQ PP+AQ KLVRC+
Sbjct: 18 RFGDHRGYFSEVFKDAWFRENVADVTFVQDNESLSAQAGTVRGLHFQIPPFAQGKLVRCL 77
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
AGRI D+ VDIR SP++G W+S E+S + G Q++IP GFAHGF T+E N+ + YKVT
Sbjct: 78 AGRIMDVVVDIRVGSPSFGKWLSQELSPDTGKQLWIPPGFAHGFATIEPNSVISYKVTAP 137
Query: 133 YSVEHDSGVAWQDKSIDI 150
YS +HD G+AW D +I I
Sbjct: 138 YSPQHDRGIAWNDPAIGI 155
>gi|168481295|gb|ACA24785.1| RmlC [Shigella dysenteriae]
Length = 183
Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 117/174 (67%), Gaps = 5/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDC-GTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S C G +RGLH+Q
Sbjct: 8 IPDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKS--CKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T++Y+ ++ + W DK + I WP L T+ +S+KD P L++
Sbjct: 126 ETAEFVYKTTNYYAPGYEGSIIWNDKILSIDWPEL-TLEYILSDKDLKAPILSE 178
>gi|325276928|ref|ZP_08142615.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas sp. TJI-51]
gi|324097943|gb|EGB96102.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas sp. TJI-51]
Length = 182
Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/169 (48%), Positives = 110/169 (65%), Gaps = 4/169 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I V + + F D RG+F ++Y++++ E+ GLQ FVQDNHS S G +RGLH+Q
Sbjct: 6 LDIPEVVLFTPKVFGDDRGFFYESYNARVFTEVTGLQPDFVQDNHSRSVK-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P+AQ KLVR I G +FD+AVDIRR+SPT+G WV +SA N Q++IP GFAHGF+TL
Sbjct: 65 LAPHAQGKLVRVIQGEVFDVAVDIRRSSPTFGKWVGAVLSAENKQQLWIPAGFAHGFVTL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK TDFYS + + +AW D I I W P +S KDQ
Sbjct: 125 SETAEFVYKTTDFYSAKSERCIAWDDPQIAIDWRFDGQ--PQLSGKDQQ 171
>gi|199599660|ref|ZP_03213036.1| dTDP-4-dehydrorhamnose 3,5-epimerase related enzyme [Lactobacillus
rhamnosus HN001]
gi|258508993|ref|YP_003171744.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus GG]
gi|199589448|gb|EDY97578.1| dTDP-4-dehydrorhamnose 3,5-epimerase related enzyme [Lactobacillus
rhamnosus HN001]
gi|257148920|emb|CAR87893.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus GG]
gi|259650286|dbj|BAI42448.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus GG]
Length = 190
Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 113/176 (64%), Gaps = 1/176 (0%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V++++T F D+RG+F++TY+ + E G+++ F QDN S S + G +RG+H+Q PYAQ
Sbjct: 13 VKLVETDVFGDNRGFFTETYTREKFVEAGIKNDFNQDNQSLSAEAGVLRGMHYQMAPYAQ 72
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G + D+ VDIR+ SPTYG W +S N Q+ +P GFAHGF+TL N
Sbjct: 73 TKLVRVVTGVVEDVLVDIRKGSPTYGQWEGYILSQYNHRQLLVPKGFAHGFITLTPNVNF 132
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+YKV +Y+ E D G+A+ D I I WP+ L +SEKDQ+ P L ++ F Y
Sbjct: 133 VYKVEGYYAPEADRGIAFDDPDIGIDWPMSTAHL-IMSEKDQHHPQLKDAENNFVY 187
>gi|26988513|ref|NP_743938.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida KT2440]
gi|24983280|gb|AAN67402.1|AE016367_2 dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida KT2440]
Length = 182
Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 116/168 (69%), Gaps = 4/168 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I V + + F D RG+F +++++++ E+ GLQ FVQDNHS S G +RGLH+Q
Sbjct: 6 LDIPEVVLFTPKVFGDERGFFYESFNARVFSEVTGLQPDFVQDNHSRSVK-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P+AQ KLVR + G +FD+AVDIRR+S T+G WV +SA N Q++IP GFAHGF+TL
Sbjct: 65 LAPHAQGKLVRVVQGEVFDVAVDIRRSSTTFGKWVGAVLSAENKNQLWIPPGFAHGFVTL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E +YK TDFYS + + +AW D ++ I WP +D++ PS+S KDQ
Sbjct: 125 SETAEFLYKTTDFYSPQCERCIAWNDPAVGIEWP-IDSV-PSLSGKDQ 170
>gi|241761596|ref|ZP_04759683.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|241373904|gb|EER63437.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 183
Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/179 (46%), Positives = 112/179 (62%), Gaps = 1/179 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V ++ K+ DSRG+FS+TY+ +K++G+ FVQDN S S + G +RGLH Q
Sbjct: 6 LSIPEVIVIAPPKYIDSRGFFSETYNENSMKKMGIDTPFVQDNQSLSRNKGVVRGLHCQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PY Q KLVRC G I+D+AVD R SPTYG WV+ EIS N QI+IP GF HGF+TL
Sbjct: 66 SPYIQGKLVRCPKGAIWDVAVDARFGSPTYGKWVAAEISEENWSQIWIPPGFLHGFVTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
NTEV YK T FY+ + V W ++I WP+ + +SEKD+ P ++ F
Sbjct: 126 ENTEVQYKCTSFYNKASERAVIWNCHRLNIPWPINHAEI-LLSEKDKTAPSFDETKKWF 183
>gi|239906435|ref|YP_002953176.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio magneticus
RS-1]
gi|239796301|dbj|BAH75290.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio magneticus
RS-1]
Length = 185
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 114/187 (60%), Gaps = 8/187 (4%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M ++P I +K F D RG+F +TYS + + GL FVQDNH+ S G +RG
Sbjct: 1 MEVSPTGIPGLVVIKPNVFGDHRGFFLETYSREAYAKAGLDYDFVQDNHARSGPKGVLRG 60
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LHFQ PP QAKLV G ++D+ VD+R SPTY W +E+SA+N L+ +P GFAHG
Sbjct: 61 LHFQLPPATQAKLVWVTRGAVYDVVVDLRVGSPTYKKWYGIELSADNFLRFMVPRGFAHG 120
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
++TL + E +YKV Y+ + D+G+AW D I I WP+ D +L S+KD P L +
Sbjct: 121 YVTLTEDAEFMYKVDAPYAPDLDAGIAWDDPDIGINWPVTDPVL---SQKDAVQPRLAAL 177
Query: 176 DSPFEYD 182
SPF Y+
Sbjct: 178 GSPFVYE 184
>gi|120598288|ref|YP_962862.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sp. W3-18-1]
gi|120558381|gb|ABM24308.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sp. W3-18-1]
Length = 182
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 116/176 (65%), Gaps = 3/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ R F D RG+F ++++ + + +G FVQDNHS S G +RGLH+Q
Sbjct: 7 KIPDVKIIEPRVFGDDRGFFFESFNQQQFEAAIGYPVNFVQDNHSKS-SKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ Q+KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 66 APHVQSKLVRCVVGEVFDVAVDIRQSSPTFGQWVGVHLSAENKRQLWIPEGFAHGFVTLR 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK T++Y D G+ W D+ + + WP+ IL ++S+KD+ P + +
Sbjct: 126 ETAEFLYKTTNYYCAASDRGIQWNDEKLAVAWPIEGLIL-TLSDKDKRQPIFEKAE 180
>gi|150004940|ref|YP_001299684.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides vulgatus ATCC
8482]
gi|294775787|ref|ZP_06741289.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides vulgatus PC510]
gi|149933364|gb|ABR40062.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides vulgatus ATCC
8482]
gi|294450373|gb|EFG18871.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides vulgatus PC510]
Length = 190
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 114/182 (62%), Gaps = 6/182 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +++ R F+D RG+F +++S + E + FVQDN S S G +RGLHFQ+
Sbjct: 7 GIEGVVVIEPRIFKDERGYFFESFSQREFNEKVMPVNFVQDNESMS-SYGVMRGLHFQQM 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY Q+KLVRC+ G + D+AVDIR+ SPTYG V++E++ N LQ +IP GFAHGF L
Sbjct: 66 PYTQSKLVRCVKGAVLDVAVDIRKGSPTYGQHVAVELTEENHLQFFIPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPF 179
YK +FY+ + D G+ +D+S+ I W P+ + IL SEKD P L DSPF
Sbjct: 126 TAVFQYKCDNFYAPQADGGIQLRDESLGIDWKIPVAEAIL---SEKDLKHPLLKDYDSPF 182
Query: 180 EY 181
+Y
Sbjct: 183 DY 184
>gi|258540230|ref|YP_003174729.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus Lc
705]
gi|56684475|gb|AAW22444.1| RmlC [Lactobacillus rhamnosus]
gi|257151906|emb|CAR90878.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus Lc
705]
Length = 190
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 113/176 (64%), Gaps = 1/176 (0%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V++++T F D+RG+F++TY+ + E G+++ F QDN S S + G +RG+H+Q PYAQ
Sbjct: 13 VKLVETDVFGDNRGFFTETYTREKFVEAGIKNDFNQDNQSLSAEAGVLRGMHYQMAPYAQ 72
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G + D+ VDIR+ SPTYG W +S N Q+ +P GFAHGF+TL N
Sbjct: 73 TKLVRVVTGVVEDVLVDIRKGSPTYGHWEGYILSQYNHRQLLVPKGFAHGFITLTPNVNF 132
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+YKV +Y+ E D G+A+ D I I WP+ L +SEKDQ+ P L ++ F Y
Sbjct: 133 VYKVEGYYAPEADRGIAFDDPDIGIDWPMSTAHL-IMSEKDQHHPQLKDAENNFIY 187
>gi|225590484|gb|ACN94858.1| RmlC [Lactobacillus rhamnosus GG]
Length = 199
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 113/176 (64%), Gaps = 1/176 (0%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V++++T F D+RG+F++TY+ + E G+++ F QDN S S + G +RG+H+Q PYAQ
Sbjct: 22 VKLVETDVFGDNRGFFTETYTREKFIEAGIKNDFNQDNQSLSAEAGVLRGMHYQMAPYAQ 81
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G + D+ VDIR+ SPTYG W +S N Q+ +P GFAHGF+TL N
Sbjct: 82 TKLVRVVTGVVEDVLVDIRKGSPTYGQWEGYILSQYNHRQLLVPKGFAHGFITLTPNVNF 141
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+YKV +Y+ E D G+A+ D I I WP+ L +SEKDQ+ P L ++ F Y
Sbjct: 142 VYKVEGYYAPEADRGIAFDDPDIGIDWPMSKAHL-IMSEKDQHHPQLKDAENNFIY 196
>gi|325571038|ref|ZP_08146610.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus casseliflavus
ATCC 12755]
gi|325156123|gb|EGC68309.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus casseliflavus
ATCC 12755]
Length = 193
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 111/182 (60%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V IL+ F D RG+F+++YS +E G+ FVQDNHS S + G +RGLHFQ+
Sbjct: 10 KLTDVLILEPAVFGDHRGFFTESYSQADFQEAGITQTFVQDNHSLSVEAGVLRGLHFQKG 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ VDIR+ SPTYG W +S +N Q+ +P GFAHGFMTL
Sbjct: 70 TAAQTKLIRVVTGAVLDVIVDIRKGSPTYGEWEGYILSESNQRQLLVPKGFAHGFMTLTS 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID--SPF 179
N +YK ++Y + D+G+A+ D + I WP+ +SEKDQ+ P L + +PF
Sbjct: 130 NVNFLYKCDNYYDAQADAGIAFDDPDLAIDWPIAKE-KAILSEKDQHHPTLKAFEEQNPF 188
Query: 180 EY 181
Y
Sbjct: 189 IY 190
>gi|56684495|gb|AAW22462.1| RmlC [Lactobacillus rhamnosus]
gi|56684515|gb|AAW22480.1| RmlC [Lactobacillus rhamnosus]
Length = 190
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 113/176 (64%), Gaps = 1/176 (0%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V++++T F D+RG+F++TY+ + E G+++ F QDN S S + G +RG+H+Q PYAQ
Sbjct: 13 VKLVETDVFGDNRGFFTETYTREKFVEAGIKNDFNQDNQSLSAEAGVLRGMHYQMAPYAQ 72
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G + D+ VDIR+ SPTYG W +S N Q+ +P GFAHGF+TL N
Sbjct: 73 TKLVRVVTGVVEDVLVDIRKGSPTYGQWEGYILSQYNHRQLLVPKGFAHGFITLTPNVNF 132
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+YKV +Y+ E D G+A+ D I I WP+ L +SEKDQ+ P L ++ F Y
Sbjct: 133 VYKVEGYYAPEADRGIAFDDPDIGIDWPMSTAHL-IMSEKDQHHPQLKDAENNFIY 187
>gi|187880505|gb|ACD37023.1| RmlC [Shigella boydii]
Length = 179
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 114/175 (65%), Gaps = 4/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKSCK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T +Y E + G+ W D++I + WPL ++ +S KD P N I
Sbjct: 126 ETAEFVYKTTQYYHPECERGIRWDDENIGVDWPLSTDLI--LSFKDTKHPKFNGI 178
>gi|254993500|ref|ZP_05275690.1| hypothetical protein LmonocytoFSL_11287 [Listeria monocytogenes FSL
J2-064]
Length = 187
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 107/170 (62%), Gaps = 3/170 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+++K + F D RG+F ++Y+ K E G+ F+QDNHS S + G +RG+H+Q P AQ
Sbjct: 11 VKLVKPKVFGDHRGFFMESYNEKAFHEAGIDMKFIQDNHSLSVEAGVLRGMHYQTNPKAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KL+R G I+D+ VD+R+ SPTYG W +S N Q+ +P GFAHGF T+ N V
Sbjct: 71 TKLIRVATGAIYDVVVDMRKGSPTYGEWEGYILSEANKHQLLVPQGFAHGFCTITENVNV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+YKV YS E+D+G+A+ D ++ITWP IL S+KD P L +
Sbjct: 131 LYKVDQLYSPENDAGIAYDDPDLNITWPTDKLIL---SDKDTKHPRLKXL 177
>gi|258509034|ref|YP_003171785.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus GG]
gi|257148961|emb|CAR87934.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus GG]
gi|259650325|dbj|BAI42487.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus GG]
Length = 190
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 113/176 (64%), Gaps = 1/176 (0%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V++++T F D+RG+F++TY+ + E G+++ F QDN S S + G +RG+H+Q PYAQ
Sbjct: 13 VKLVETDVFGDNRGFFTETYTREKFIEAGIKNDFNQDNQSLSAEAGVLRGMHYQMAPYAQ 72
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G + D+ VDIR+ SPTYG W +S N Q+ +P GFAHGF+TL N
Sbjct: 73 TKLVRVVTGVVEDVLVDIRKGSPTYGQWEGYILSQYNHRQLLVPKGFAHGFITLTPNVNF 132
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+YKV +Y+ E D G+A+ D I I WP+ L +SEKDQ+ P L ++ F Y
Sbjct: 133 VYKVEGYYAPEADRGIAFDDPDIGIDWPMSTAHL-IMSEKDQHHPQLKDAENNFIY 187
>gi|257126937|ref|YP_003165051.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptotrichia buccalis
C-1013-b]
gi|257050876|gb|ACV40060.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptotrichia buccalis
C-1013-b]
Length = 190
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/169 (46%), Positives = 114/169 (67%), Gaps = 6/169 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ + F D RG+F +TY+ K +ELGL FVQDNHS S G +RGLHFQ
Sbjct: 11 IKDLVIIEPKVFGDERGFFMETYNQKSFEELGLTMSFVQDNHSKS-KKGVLRGLHFQ-TK 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR I G ++D+AVD+R+ S T+G W ++++SA N L Y+P GFAHGF+TLE
Sbjct: 69 HTQGKLVRVIKGSVYDVAVDLRKGSDTFGKWYAIKLSAENKLMFYVPEGFAHGFLTLEDE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILP----SVSEKDQ 167
TE +Y+ TD Y+ E+DSG+ W D++I+I W + + ++SEKD+
Sbjct: 129 TEFVYRCTDLYAPEYDSGLLWNDETINIDWKFEEFGINHDELTISEKDK 177
>gi|187935603|ref|YP_001887438.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum B str.
Eklund 17B]
gi|187723756|gb|ACD24977.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum B str.
Eklund 17B]
Length = 179
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 113/177 (63%), Gaps = 5/177 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V I++ + F D RGWF +TYS E+ F+QDN S+S + G +RG+HFQ
Sbjct: 8 LDGVYIVEPQVFGDERGWFMETYSKIKTPEIACD--FIQDNQSYSKEKGILRGIHFQNGK 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQAKLVRC+ G + D+AVD+R+NSPTY WV++E+SA N Q++IP GF HGF+TL +
Sbjct: 66 HAQAKLVRCVRGAVLDVAVDLRKNSPTYKQWVAVELSAENKKQLFIPRGFGHGFVTLTDD 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
E +YK ++Y+ E D + + D I + W + + IL SEKD+ P L D F
Sbjct: 126 VEFVYKTDNYYNHESDRSIRFNDPEIGVEWGIKNPIL---SEKDKKAPLLKDSDCIF 179
>gi|254430167|ref|ZP_05043870.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanobium sp. PCC 7001]
gi|197624620|gb|EDY37179.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanobium sp. PCC 7001]
Length = 191
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 106/173 (61%), Gaps = 3/173 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +L R F D RG+F ++++ FVQDNHS S G +RGLH+Q PP+ Q
Sbjct: 17 VLLLTPRVFGDDRGFFFESWNQNAFNAAAGPTAFVQDNHSRSVQ-GVLRGLHYQLPPHPQ 75
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVRC+ G IFD+AVDIR +SPT+G W + +SA N Q+++P G+AHGF+TL EV
Sbjct: 76 GKLVRCLVGEIFDVAVDIRPSSPTFGQWGGVRLSAANKQQLWVPAGYAHGFLTLSPEAEV 135
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQID 176
+YK TDF+S E + G+ W D I I WP L P +S KD P L + D
Sbjct: 136 LYKTTDFWSKECERGIRWDDPQIGIAWPQEGLPDGQPLLSAKDAVAPALAEAD 188
>gi|242278516|ref|YP_002990645.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio salexigens DSM
2638]
gi|242121410|gb|ACS79106.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio salexigens DSM
2638]
Length = 183
Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 110/174 (63%), Gaps = 3/174 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ + F D RG+F ++++ + E GL FVQDNH++S G IRGLH Q PP+AQAK
Sbjct: 13 VIEPKVFRDRRGFFLESFNKNVFAENGLPTDFVQDNHAYSSGLGVIRGLHLQMPPHAQAK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV G + D+ VD+R+ SPTY +E+SA N L+++IP GFAHG+ TL E +Y
Sbjct: 73 LVWVTRGAVNDVVVDLRKGSPTYRRSFKIELSAENFLRLFIPKGFAHGYETLTEENEFMY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
KV Y+ ++G+ W D +DI W T P +S+KD LP L Q DSPFE+
Sbjct: 133 KVDSGYAPGSEAGIRWDDPELDIDW---KTKNPVLSDKDLELPLLAQFDSPFEF 183
>gi|148252643|ref|YP_001237228.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bradyrhizobium sp. BTAi1]
gi|146404816|gb|ABQ33322.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bradyrhizobium sp. BTAi1]
Length = 191
Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/170 (47%), Positives = 113/170 (66%), Gaps = 3/170 (1%)
Query: 13 KFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
K D+RG+FS+ Y ++ GL FVQ+NH FS G +RGLHFQRPP AQ KLVRCI
Sbjct: 18 KHGDARGFFSEVYRREIASAAGLPVDFVQENHVFSAQRGVLRGLHFQRPPRAQGKLVRCI 77
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
G I D+AVDIR SPT+G V++E+S+ N Q+++P GFAHG+ LE EV+YKVTD+
Sbjct: 78 RGAILDVAVDIRTGSPTFGRHVAVELSSANWTQLWVPEGFAHGYAVLEAPCEVLYKVTDY 137
Query: 133 YSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFEY 181
++ + G+AW D + I W L D ++ +S+KD+ P L+ + F++
Sbjct: 138 WAPSSELGLAWDDPDLGIDWRLGRDEVI--LSDKDRVHPRLSGLAPVFQF 185
>gi|312868786|ref|ZP_07728977.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus oris
PB013-T2-3]
gi|311095685|gb|EFQ53938.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus oris
PB013-T2-3]
Length = 191
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 111/177 (62%), Gaps = 3/177 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
+I++T F D RG+F++TY+ +E G+ F QDN S S + G +RG+H+Q PY+Q
Sbjct: 13 AKIVETDVFGDHRGFFTETYTKNKFEEAGVNVEFTQDNQSLSVEPGVLRGMHYQLAPYSQ 72
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KL+R + G I+D+ VDIR+ SP YG W +S N Q+ +P GFAHGF+TL N V
Sbjct: 73 TKLLRAVTGAIYDVIVDIRKGSPAYGKWEGFILSEYNHRQLLVPKGFAHGFVTLTPNVNV 132
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFEY 181
YKV +Y+ E D G+A+ D +DI WP+ +D ++ +SEKDQ+ P + F Y
Sbjct: 133 AYKVDGYYAPEADRGIAFDDPDLDIKWPMPVDHLI--LSEKDQHHPAFKDAEINFTY 187
>gi|168481379|gb|ACA24862.1| RmlC [Shigella dysenteriae]
gi|168481394|gb|ACA24876.1| RmlC [Escherichia coli]
Length = 180
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 113/166 (68%), Gaps = 3/166 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKIFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKSCK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFITLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP-LLDTILPSVSEK 165
E +YK TDFYS +H+ + + D+SI I WP D +L S +K
Sbjct: 126 NIAEFLYKTTDFYSPKHEVCIRYDDESIGIQWPKATDKMLISSKDK 171
>gi|13650067|gb|AAK37550.1|AF349575_1 putative dTDP-rhamnose-3,5-epimerase [Azospirillum brasilense]
gi|46241701|gb|AAS83086.1| putative dTDP-rhamnose-3,5-epimerase [Azospirillum brasilense]
Length = 187
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 114/175 (65%), Gaps = 2/175 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
VR++ ++F D+RG+F +T++ + GL+ +VQDN S S GT+RG+H+Q P+AQ
Sbjct: 11 VRLVVPKRFGDARGYFVETWNEQAFALNGLERRWVQDNQSLSATPGTVRGMHYQLAPFAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KL+R +AGRI D+ VDIRR SPT+G V++E++A+ Q++IP GFAHGF TLE NT V
Sbjct: 71 TKLIRVLAGRILDVVVDIRRGSPTFGRHVAVELTADGLEQLFIPAGFAHGFCTLEPNTAV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
YKV YS E + + W D ++ I WP + SVS+KD P L + F+
Sbjct: 131 AYKVDAPYSRECERAILWNDPALGIDWPAMAGA--SVSDKDAVAPRLAKATDLFD 183
>gi|283785858|ref|YP_003365723.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Citrobacter rodentium ICC168]
gi|282949312|emb|CBG88923.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Citrobacter rodentium ICC168]
Length = 182
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 113/174 (64%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVLIFEPKVFGDERGFFMESFNQKVFEEAIGRKVDFVQDNHSKS-SKGVLRGLHYQLA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQAKLVRCIAG +FD+AVDIR +SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 67 PYAQAKLVRCIAGEVFDVAVDIRESSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++Y E D G+ W D I I W + +S+KD+ P + +
Sbjct: 127 TAEFVYKTTNYYHPECDRGIRWDDAYIGIKWG--NDYNVKLSDKDKKNPTMKDV 178
>gi|168481307|gb|ACA24796.1| RmlC [Escherichia coli]
Length = 183
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 115/173 (66%), Gaps = 3/173 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKSCK-GVLRGLHYQLE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVRC+ G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 67 PYAQGKLVRCVVGEVFDVAVDIRKWSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T++Y+ ++ + W DK + I WP L T+ +S+KD P L++
Sbjct: 127 TAEFVYKTTNYYAPGYEGSIIWNDKILSIDWPEL-TLEYILSDKDLKAPILSE 178
>gi|325105319|ref|YP_004274973.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pedobacter saltans DSM 12145]
gi|324974167|gb|ADY53151.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pedobacter saltans DSM 12145]
Length = 182
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 114/177 (64%), Gaps = 2/177 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + +++ + ++D RG+F ++Y+ KL KE G+ FVQDN S+S GT+RGLH Q P
Sbjct: 8 IKGLIVIEPKIWKDDRGYFYESYNEKLFKEAGIDTSFVQDNQSYS-QKGTLRGLHAQANP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVR I G++ D+AVDIR++SPTYG + S+E+S N ++P GF HGF+TLE N
Sbjct: 67 FAQGKLVRVIQGKVLDVAVDIRKDSPTYGQYFSVELSGENFKMFWVPPGFLHGFITLEDN 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
T YKVT Y + GV W D ++I W DT +SEKD+ L + +SPF
Sbjct: 127 TIFSYKVTGLYDKASELGVLWNDPDLNIDWK-FDTRQAILSEKDKQLISFKEFNSPF 182
>gi|15895598|ref|NP_348947.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium acetobutylicum
ATCC 824]
gi|15025340|gb|AAK80287.1|AE007734_1 DTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium acetobutylicum
ATCC 824]
gi|325509746|gb|ADZ21382.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium acetobutylicum EA
2018]
Length = 185
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 108/178 (60%), Gaps = 2/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I+ V I++T F D+RG+F +TY+ + KE GL VFVQDN S S G +RGLHFQ+
Sbjct: 10 DIDGVYIIETGVFGDNRGYFMETYNYEEFKEAGLDMVFVQDNQSKSRK-GVLRGLHFQKK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R S TYG WV + +S N Q YIP GFAHGF+ L
Sbjct: 69 -HTQGKLVRVVKGEVFDVAVDLREGSKTYGKWVGVTLSEENKKQFYIPEGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
E YK TDFY + G+ W D + I WP+ D SEKDQ P L++ F
Sbjct: 128 EAEFCYKCTDFYDPTSEGGILWNDPEVGIKWPIDDIENLIFSEKDQKWPKLSECGIKF 185
>gi|299532674|ref|ZP_07046062.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Comamonas testosteroni S44]
gi|298719309|gb|EFI60278.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Comamonas testosteroni S44]
Length = 183
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 110/175 (62%), Gaps = 3/175 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I +++ K D RG F +++ L + G F+QDNHS S G +RGLH+Q P
Sbjct: 8 IPEIKLFKPTIHRDGRGLFVESFRQDLFNQATGTNYEFIQDNHSRS-SKGVLRGLHYQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVR I+G +FD+AVDIRR+S T+G WV E+SA N Q++IP GFAHGF+ L
Sbjct: 67 PHAQGKLVRVISGAVFDVAVDIRRSSLTFGKWVGAELSAENHRQLWIPPGFAHGFVVLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+++YK T +Y+ E D G+ W D I I WP LD S+SEKDQ+ P Q +
Sbjct: 127 TADLVYKATAYYAPESDRGLLWNDPDIAIAWPQLDIDF-SLSEKDQHQPAFTQAE 180
>gi|83859876|ref|ZP_00953396.1| hypothetical protein OA2633_07744 [Oceanicaulis alexandrii
HTCC2633]
gi|83852235|gb|EAP90089.1| hypothetical protein OA2633_07744 [Oceanicaulis alexandrii
HTCC2633]
Length = 186
Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/182 (44%), Positives = 110/182 (60%), Gaps = 3/182 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V+++ ++F D RGWF++T+SS L LG FVQDN S+S GT+RGLH Q
Sbjct: 6 LQIPDVKLISPKRFRDDRGWFNETWSSDKLAGLGFVQSFVQDNLSYSSASGTLRGLHCQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP AQ KLV + G I+D VD+R SPT+G V +E+ N Q++IP GF HGF+T
Sbjct: 66 PPCAQGKLVSVVTGAIWDFVVDVRTGSPTFGQSVRIELDENTPHQLWIPEGFLHGFLTRA 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T V YKVT YS HD +AW D + + W + D +L S+KD+ P L D F
Sbjct: 126 PDTRVSYKVTAPYSPAHDRSIAWNDPFLGLAWGVADPVL---SDKDRQAPQLKNSDVHFT 182
Query: 181 YD 182
Y+
Sbjct: 183 YE 184
>gi|212694335|ref|ZP_03302463.1| hypothetical protein BACDOR_03861 [Bacteroides dorei DSM 17855]
gi|237727666|ref|ZP_04558147.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D4]
gi|212662836|gb|EEB23410.1| hypothetical protein BACDOR_03861 [Bacteroides dorei DSM 17855]
gi|229434522|gb|EEO44599.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides dorei 5_1_36/D4]
Length = 190
Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 114/182 (62%), Gaps = 6/182 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +++ R F+D RG+F +++S + E + FVQDN S S G +RGLHFQ+
Sbjct: 7 GIEGVVVIEPRIFKDERGYFFESFSQREFNEKVMPVNFVQDNESMS-SYGVMRGLHFQQM 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY Q+KLVRC+ G + D+AVDIR+ SPTYG V++E++ N LQ +IP GFAHGF L
Sbjct: 66 PYTQSKLVRCVKGAVLDVAVDIRKGSPTYGQHVAVELTEENHLQFFIPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPF 179
YK +FY+ + D G+ +D+S+ I W P+ + IL SEKD P L DSPF
Sbjct: 126 IAVFQYKCDNFYAPQADGGIQLRDESLGIDWKIPVAEAIL---SEKDLKHPLLKDYDSPF 182
Query: 180 EY 181
+Y
Sbjct: 183 DY 184
>gi|46579112|ref|YP_009920.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio vulgaris str.
Hildenborough]
gi|120603309|ref|YP_967709.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio vulgaris DP4]
gi|46448525|gb|AAS95179.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio vulgaris str.
Hildenborough]
gi|120563538|gb|ABM29282.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio vulgaris DP4]
gi|311232955|gb|ADP85809.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio vulgaris RCH1]
Length = 190
Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 79/176 (44%), Positives = 105/176 (59%), Gaps = 3/176 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
+R+L + D RG+F +TY L FVQDNH+ S D G +RGLHFQ PP Q
Sbjct: 11 LRLLTPQAHRDERGFFLETYRESFFDTLTHGQRFVQDNHARSEDAGVLRGLHFQLPPMTQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKLV + G I+D+AVD+R SPT+G W ++A + +IY+P GFAHG+MTLE TEV
Sbjct: 71 AKLVWAVQGSIYDVAVDLREGSPTFGRWFGCTLTAASFQRIYVPRGFAHGYMTLEPGTEV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+YKV +Y+ + G+ W D I ITWP + IL S KDQ +PF +
Sbjct: 131 MYKVDAYYAPALEQGLPWNDPDIGITWPDMTPIL---SAKDQRHGTFRDFRTPFSF 183
>gi|317498846|ref|ZP_07957132.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lachnospiraceae bacterium
5_1_63FAA]
gi|316893874|gb|EFV16070.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lachnospiraceae bacterium
5_1_63FAA]
Length = 184
Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 79/167 (47%), Positives = 107/167 (64%), Gaps = 2/167 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + +++ F+D RG+F +TY+ +KE GL VFVQDN S S G +RGLHFQ+
Sbjct: 10 DIEGLYVIEPTVFKDERGYFVETYNQNDMKEAGLDMVFVQDNQSMS-TRGVLRGLHFQKQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G++FD+AVD+R +S TYG W +E+SA N Q YIP GFAHGF+ L
Sbjct: 69 -FPQGKLVRVVRGKVFDVAVDLRSDSKTYGKWFGVELSAENMKQFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E YK TDFY + G+AW D I + WPL + + +SEKDQ
Sbjct: 128 EAEFCYKCTDFYHPGDEGGLAWNDPEIGVEWPLEEGVDLIISEKDQK 174
>gi|289434339|ref|YP_003464211.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289170583|emb|CBH27123.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria seeligeri serovar
1/2b str. SLCC3954]
Length = 186
Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 109/174 (62%), Gaps = 3/174 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+++K + F D RG+F ++Y+ K + G+ F+QDNHS S + G +RG+H+Q P AQ
Sbjct: 11 VKLVKPKVFGDHRGFFMESYNEKAFHDAGIDMKFIQDNHSLSVEAGVLRGMHYQTNPKAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KL+R G I+D+ VD+R+ SPTYG W +S N Q+ +P GFAHGF T+ N V
Sbjct: 71 TKLIRVGTGAIYDVVVDMRKGSPTYGEWEGFILSEANKHQLLVPQGFAHGFCTITENVNV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+YKV YS E+D+G+A+ D ++ITWP IL S+KD P L ++ F
Sbjct: 131 LYKVDQLYSPENDAGIAYDDPDLNITWPTDKLIL---SDKDTKHPRLKDAENNF 181
>gi|257893558|ref|ZP_05673211.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
1,231,408]
gi|257829937|gb|EEV56544.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
1,231,408]
Length = 197
Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 112/181 (61%), Gaps = 3/181 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V+I++ F D RG+F+++YS E GL+ FVQDNHS S + G +RGLHFQ+
Sbjct: 15 LTDVKIVEMDVFGDHRGFFTESYSKAKFAEHGLKYDFVQDNHSLSAEAGVLRGLHFQKGE 74
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KL+R + G + D+ VDIR+ SPTYG W +S +N Q+ +P G+AHGF+TL N
Sbjct: 75 AAQTKLIRVVTGAVLDVVVDIRKGSPTYGQWDGFILSEHNHRQLLVPKGYAHGFVTLTPN 134
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS--PFE 180
+YK ++Y+ E D G+A+ D + I WP +D +SEKD P L + ++ PF
Sbjct: 135 VNFLYKCDNYYNAEADGGIAFDDPDLAIDWP-IDPSRAIMSEKDHRHPTLKEFEAENPFV 193
Query: 181 Y 181
Y
Sbjct: 194 Y 194
>gi|317052620|ref|YP_004113736.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfurispirillum indicum
S5]
gi|316947704|gb|ADU67180.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfurispirillum indicum
S5]
Length = 189
Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 88/183 (48%), Positives = 116/183 (63%), Gaps = 10/183 (5%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIR 54
M I P +I L+ R EDSRG+F +T+ L LG Q FVQDN S S CG +R
Sbjct: 1 MKITPTQIADVLLLEPRVLEDSRGYFMETFRLDALHAALGFQVGFVQDNESCS-RCGVLR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
GLH+Q PP+AQ+KLVR +AG + D+AVDIRR SPT+G VS E+SA N QI+IP GFAH
Sbjct: 60 GLHYQLPPFAQSKLVRVVAGCVLDVAVDIRRESPTFGACVSTELSAENKRQIFIPRGFAH 119
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLN 173
GF+ L V YKV ++YS + D G+ + D + I W L D +L +S+KD + P L
Sbjct: 120 GFVVLSEVAVVQYKVDNYYSSKSDRGIVYNDPHLGIDWRLPADQLL--LSDKDSHQPSLK 177
Query: 174 QID 176
+ +
Sbjct: 178 EAE 180
>gi|313633864|gb|EFS00584.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria seeligeri FSL
N1-067]
Length = 186
Score = 161 bits (408), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 109/174 (62%), Gaps = 3/174 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+++K + F D RG+F ++Y+ K + G+ F+QDNHS S + G +RG+H+Q P AQ
Sbjct: 11 VKLVKPKVFGDHRGFFMESYNEKAFHDAGIDMKFIQDNHSLSVEAGVLRGMHYQTNPRAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KL+R G I+D+ VD+R+ SPTYG W +S N Q+ +P GFAHGF T+ N V
Sbjct: 71 TKLIRVGTGAIYDVVVDMRKGSPTYGEWEGFILSEANKHQLLVPQGFAHGFCTITENVNV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+YKV YS E+D+G+A+ D ++ITWP IL S+KD P L ++ F
Sbjct: 131 LYKVDQLYSPENDAGIAYDDPDLNITWPTDKLIL---SDKDTKHPRLKDAENNF 181
>gi|91211322|ref|YP_541308.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli UTI89]
gi|300986909|ref|ZP_07177887.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 45-1]
gi|91072896|gb|ABE07777.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase) (dTDP-L-rhamnose synthetase) [Escherichia
coli UTI89]
gi|288816226|gb|ADC54948.1| RmlC [Escherichia coli]
gi|294493064|gb|ADE91820.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli IHE3034]
gi|300407838|gb|EFJ91376.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 45-1]
gi|307626418|gb|ADN70722.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli
UM146]
gi|315295252|gb|EFU54587.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 153-1]
Length = 185
Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 115/176 (65%), Gaps = 4/176 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++Y+ ++ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVLIFEPKVFGDERGFFFESYNQRVFEEAVGRKVEFVQDNHSKS-RKGVLRGLHYQLE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQAKLVRCI G +FDIAVDIR++SP +G WV + +SA N Q++IP GFAHGF+ +
Sbjct: 67 PYAQAKLVRCIEGEVFDIAVDIRKSSPFFGKWVGVTLSAENKRQLWIPEGFAHGFVVISD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E +YK ++YS + + + + DK + I WPL + +SEKD N P +I S
Sbjct: 127 TAEFVYKTNNYYSQQAERSIIFDDKDLGIAWPLNTHYI--LSEKDLNAPTFKKISS 180
>gi|167748151|ref|ZP_02420278.1| hypothetical protein ANACAC_02895 [Anaerostipes caccae DSM 14662]
gi|317472316|ref|ZP_07931644.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anaerostipes sp. 3_2_56FAA]
gi|167652143|gb|EDR96272.1| hypothetical protein ANACAC_02895 [Anaerostipes caccae DSM 14662]
gi|316900273|gb|EFV22259.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anaerostipes sp. 3_2_56FAA]
Length = 184
Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/167 (47%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ F D RG+F +TY+ K +E GL FVQDN S S G +RGLHFQ+
Sbjct: 10 EIEGLHIIEPAVFPDERGYFMETYNQKDFEEAGLGMTFVQDNQSMSVK-GVLRGLHFQKQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G++FD+AVD+R++S TYG W +E+SA N Q YIP GFAHGF+ L
Sbjct: 69 -YPQGKLVRVVRGKVFDVAVDLRKDSQTYGKWFGVELSAENKKQFYIPEGFAHGFLVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E YK TDFY + G+ W D I I WP + +SEKDQ
Sbjct: 128 EAEFCYKCTDFYHPGDEGGIKWDDPDIGIEWPFEEGTELVISEKDQK 174
>gi|191167713|ref|ZP_03029521.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli B7A]
gi|76366005|gb|ABA42230.1| RmlC [Escherichia coli]
gi|190902226|gb|EDV61967.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli B7A]
Length = 185
Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 110/164 (67%), Gaps = 2/164 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q PYA
Sbjct: 11 VLIFEPKVFGDERGFFMESFNQKIFEEAVGRKVEFVQDNHSKS-TKGVLRGLHYQLEPYA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L E
Sbjct: 70 QGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLSETAE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+YK T++Y+ + +++ D +I I WP L + +S KD N
Sbjct: 130 FVYKTTNYYNPSFEKSISYSDPTIKIQWPNLQDMHFKLSNKDLN 173
>gi|16611740|gb|AAL27325.1|AF402313_5 dTDP-6-deoxy-D-glucose-3,5 epimerase [Shigella boydii]
Length = 178
Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 114/170 (67%), Gaps = 5/170 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q PYA
Sbjct: 11 VLIFEPKVFGDERGFFFESFNQKIFEEAVGRKVEFVQDNHSKS-SKGVLRGLHYQLEPYA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRC+ G +FD+AVDIR++S T+G WV + +SA N Q++IP GFAHGF+TL E
Sbjct: 70 QGKLVRCVVGEVFDVAVDIRKSSTTFGKWVGVNLSAENKRQLWIPEGFAHGFITLSNIAE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD-QNLPFLN 173
IYK T FY+ + +AW D ++I W + LP VS+KD + LPF N
Sbjct: 130 FIYKTTQFYNPSFERVIAWDDPVLNINWNIKQ--LPFVSKKDMKGLPFRN 177
>gi|301311243|ref|ZP_07217171.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 20_3]
gi|300830817|gb|EFK61459.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 20_3]
Length = 193
Score = 161 bits (407), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 118/181 (65%), Gaps = 4/181 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V I++ + F+D+RG+F +++S + +E + FVQDN S S G +RGLHFQRP
Sbjct: 7 DIEGVVIIEPKVFDDARGYFFESFSQREFEEKVRKINFVQDNESMS-SYGVMRGLHFQRP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ Q+KLVRC+ G + D+AVDIR+ SPTYG V++E+S +N Q ++P GFAHGF L
Sbjct: 66 PFTQSKLVRCVKGCVLDVAVDIRKGSPTYGKHVAVELSEDNHRQFFVPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFE 180
YK +FY+ + D G+ +D+S+ I W + +D L +SEKD P L DSPF+
Sbjct: 126 IAVFQYKCDNFYAPQADGGICIKDESLGIDWRIPMDKAL--LSEKDIKHPCLEDFDSPFD 183
Query: 181 Y 181
Y
Sbjct: 184 Y 184
>gi|293415326|ref|ZP_06657969.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli B185]
gi|291432974|gb|EFF05953.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli B185]
Length = 185
Score = 161 bits (407), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 110/164 (67%), Gaps = 2/164 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q PYA
Sbjct: 11 VLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKS-TKGVLRGLHYQLEPYA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L E
Sbjct: 70 QGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLSETAE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+YK T++Y+ + +++ D +I I WP L + +S KD N
Sbjct: 130 FVYKTTNYYNPSFEKSISYSDPTIKIQWPNLQDMHFKLSNKDLN 173
>gi|69244638|ref|ZP_00602902.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium DO]
gi|257882964|ref|ZP_05662617.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
1,231,502]
gi|257885215|ref|ZP_05664868.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
1,231,501]
gi|257891454|ref|ZP_05671107.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
1,231,410]
gi|258614493|ref|ZP_05712263.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium DO]
gi|260560530|ref|ZP_05832704.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium C68]
gi|261206555|ref|ZP_05921255.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium TC 6]
gi|289565465|ref|ZP_06445914.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium D344SRF]
gi|293553222|ref|ZP_06673859.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium E1039]
gi|293560232|ref|ZP_06676732.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium E1162]
gi|293568262|ref|ZP_06679586.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium E1071]
gi|294614673|ref|ZP_06694575.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium E1636]
gi|294619030|ref|ZP_06698525.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium E1679]
gi|294620973|ref|ZP_06700172.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium U0317]
gi|314940009|ref|ZP_07847202.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
TX0133a04]
gi|314941887|ref|ZP_07848751.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium TX0133C]
gi|314950067|ref|ZP_07853354.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium TX0082]
gi|314952414|ref|ZP_07855420.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium TX0133A]
gi|314993217|ref|ZP_07858597.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium TX0133B]
gi|314997807|ref|ZP_07862719.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
TX0133a01]
gi|68196229|gb|EAN10658.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium DO]
gi|257818622|gb|EEV45950.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
1,231,502]
gi|257821067|gb|EEV48201.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
1,231,501]
gi|257827814|gb|EEV54440.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
1,231,410]
gi|260073532|gb|EEW61860.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium C68]
gi|260079265|gb|EEW66956.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium TC 6]
gi|289162794|gb|EFD10645.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium D344SRF]
gi|291588974|gb|EFF20798.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium E1071]
gi|291592411|gb|EFF24018.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium E1636]
gi|291594691|gb|EFF26073.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium E1679]
gi|291599431|gb|EFF30449.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium U0317]
gi|291602632|gb|EFF32847.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium E1039]
gi|291605804|gb|EFF35238.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium E1162]
gi|313588179|gb|EFR67024.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
TX0133a01]
gi|313592298|gb|EFR71143.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium TX0133B]
gi|313595457|gb|EFR74302.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium TX0133A]
gi|313599312|gb|EFR78157.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium TX0133C]
gi|313640742|gb|EFS05322.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
TX0133a04]
gi|313643602|gb|EFS08182.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium TX0082]
Length = 190
Score = 161 bits (407), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 112/182 (61%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ F D RG+F+++YS E GL+ FVQDNHS S + G +RGLHFQ+
Sbjct: 7 KLTDVKIVEMDVFGDHRGFFTESYSKAKFAEHGLKYDFVQDNHSLSAEAGVLRGLHFQKG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ VDIR+ SPTYG W +S +N Q+ +P G+AHGF+TL
Sbjct: 67 EAAQTKLIRVVTGAVLDVVVDIRKGSPTYGQWDGFILSEHNHRQLLVPKGYAHGFVTLTP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS--PF 179
N +YK ++Y+ E D G+A+ D + I WP +D +SEKD P L + ++ PF
Sbjct: 127 NVNFLYKCDNYYNAEADGGIAFDDPDLAIDWP-IDPSRAIMSEKDHRHPTLKEFEAENPF 185
Query: 180 EY 181
Y
Sbjct: 186 VY 187
>gi|256017789|ref|ZP_05431654.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella sp. D9]
gi|332278810|ref|ZP_08391223.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella sp. D9]
gi|332101162|gb|EGJ04508.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella sp. D9]
Length = 185
Score = 160 bits (406), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 115/176 (65%), Gaps = 4/176 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVLIFEPKVFGDERGFFFESFNQKIFEEAVGRKVEFVQDNHSKS-RKGVLRGLHYQLE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQAKLVRCI G +FDIAVDIR++SP +G WV + +SA N Q++IP GFAHGF+ +
Sbjct: 67 PYAQAKLVRCIEGEVFDIAVDIRKSSPFFGKWVGVTLSAENKRQLWIPEGFAHGFVVISD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E +YK ++YS + + + + DK + I WPL + +SEKD N P +I S
Sbjct: 127 TAEFVYKTNNYYSQQAERSIIFDDKDLGIAWPLNTHYI--LSEKDLNAPTFKKISS 180
>gi|261415186|ref|YP_003248869.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261371642|gb|ACX74387.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|302326605|gb|ADL25806.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 187
Score = 160 bits (406), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 109/178 (61%), Gaps = 2/178 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+I++ F D+RG+F +TYS + E G+ FVQDN S S G +RGLHFQ+
Sbjct: 11 IEGVKIIEPTVFGDARGYFMETYSKRDFAEGGIDVDFVQDNESRS-RKGVLRGLHFQKQN 69
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR I G +FD+AVD+R+NS T+G WV + +SA N Q YIP GFAHGF+ L
Sbjct: 70 -PQGKLVRVIEGEVFDVAVDLRKNSKTFGKWVGVTLSAENKKQFYIPEGFAHGFVVLSET 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+YK T FY+ + G+ W D +I I WP+ + P +SEKD P L +D F+
Sbjct: 129 AAFVYKCTRFYAPNDEGGLFWNDPAIGIKWPVGEGFEPLLSEKDTKNPLLKDLDFAFD 186
>gi|329113803|ref|ZP_08242574.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetobacter pomorum DM001]
gi|326696813|gb|EGE48483.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetobacter pomorum DM001]
Length = 190
Score = 160 bits (406), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 110/185 (59%), Gaps = 5/185 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V ++ +F D+RG+FS+TY+ + ++E G+ + FVQDN S S G IRGLH Q
Sbjct: 6 LAIPDVILITPPRFGDNRGFFSETYNIERMREAGITEPFVQDNQSLSRQKGVIRGLHCQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC G I+D+AVD R SPTYG WV+ E+S N Q++IP GF HGF TL
Sbjct: 66 DPFAQGKLVRCTRGAIWDVAVDARTGSPTYGKWVAAELSEENWSQLWIPPGFLHGFCTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL--DTILPSVSEKDQNLPFLNQIDSP 178
N EV YK T YS + V W + I WP+ D +L SEKD P +
Sbjct: 126 ENAEVQYKCTALYSKASERAVIWNSAELGIEWPVKAEDAVL---SEKDLLAPEFSAAKGW 182
Query: 179 FEYDG 183
F+Y G
Sbjct: 183 FQYTG 187
>gi|255524619|ref|ZP_05391572.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium carboxidivorans
P7]
gi|255511643|gb|EET87930.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium carboxidivorans
P7]
Length = 181
Score = 160 bits (406), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 111/175 (63%), Gaps = 6/175 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V I+ F D RG+F +TY+ K +GL VFVQDN S S G +RGLHFQ+
Sbjct: 11 IDGVYIIDVEIFSDKRGYFIETYNYDDFKSVGLDMVFVQDNQSSS-KKGVLRGLHFQKT- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR I G +FD+AVDIR+NS T+G WV + +S N Q YIP GFAHGF+ L
Sbjct: 69 HPQGKLVRVIKGEVFDVAVDIRKNSKTFGKWVGVTLSEGNKRQFYIPQGFAHGFLVLSDE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQI 175
+E+ YK TDFY E + G+AW D I I WP+ +D I+ +S+KD N ++I
Sbjct: 129 SEICYKCTDFYHSEDEGGIAWDDPEIGIEWPMEGIDEII--LSDKDGNRENFSKI 181
>gi|303238695|ref|ZP_07325228.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetivibrio cellulolyticus
CD2]
gi|302593814|gb|EFL63529.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetivibrio cellulolyticus
CD2]
Length = 182
Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 114/172 (66%), Gaps = 3/172 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++++ F DSRG+F ++Y+ +ELGL FVQDNHS S G +RG+HFQ
Sbjct: 11 IRDLVIIESKVFGDSRGFFMESYNKASFEELGLNMEFVQDNHSKS-KKGVLRGIHFQ-TK 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ KLVR I GR++D+AVD+R+ S T+G W ++E++ N YIP GF H F+T+E +
Sbjct: 69 YAQGKLVRVIKGRVYDVAVDLRKGSETFGKWYAIELTEENKTMFYIPEGFGHAFLTMEDD 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
TE YK T+ Y E+D+G+ ++DK I I WP + +SEKD+ LP L +
Sbjct: 129 TEFSYKTTNIYHPEYDAGIIYKDKDIAIDWPNIGCEFI-LSEKDKVLPSLKE 179
>gi|310829413|ref|YP_003961770.1| dTDP-4-dehydrorhamnose 3 [Eubacterium limosum KIST612]
gi|308741147|gb|ADO38807.1| dTDP-4-dehydrorhamnose 3 [Eubacterium limosum KIST612]
Length = 186
Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 81/182 (44%), Positives = 110/182 (60%), Gaps = 7/182 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ F D RG+F +TY+ + ++ GL F+QDN S S G +RGLHFQR
Sbjct: 10 QIEGLVIVQPSVFGDERGYFMETYNKEEFEKQGLNMTFIQDNESKS-KKGVLRGLHFQRK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+Q KLVRC G ++D+ VD+R+ SPTYG W +E+SA N YIP GFAHGF+ L
Sbjct: 69 -YSQGKLVRCTQGAVWDVGVDLRKGSPTYGEWAGVELSAENKTMFYIPEGFAHGFVVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQIDSPF 179
YK T+ Y+ E+D G+ W D I + WP+ L+ +L SEKDQ PFL I
Sbjct: 128 EATFNYKCTNLYAPEYDGGIRWNDPEIGVEWPVEGLELLL---SEKDQKQPFLKDIKDTL 184
Query: 180 EY 181
E+
Sbjct: 185 EF 186
>gi|168481242|gb|ACA24737.1| RmlC [Escherichia coli]
Length = 178
Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 114/170 (67%), Gaps = 5/170 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q PYA
Sbjct: 11 VLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKS-SKGVLRGLHYQLEPYA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRC+ G +FD+AVDIR++S T+G WV + +SA N Q++IP GFAHGF+TL E
Sbjct: 70 QGKLVRCVVGEVFDVAVDIRKSSSTFGKWVGVNLSAENKRQLWIPEGFAHGFITLSNIAE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD-QNLPFLN 173
IYK T FY+ + +AW D ++I W + LP VS+KD + LPF N
Sbjct: 130 FIYKTTQFYNPSFERVIAWDDPVLNINWNIKQ--LPIVSKKDMKGLPFSN 177
>gi|115503061|gb|ABI98984.1| RmlC [Escherichia coli]
gi|156539326|gb|ABU80589.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Shigella flexneri]
gi|156539341|gb|ABU80599.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Shigella flexneri]
gi|168481278|gb|ACA24770.1| RmlC [Shigella flexneri 6]
gi|320185804|gb|EFW60558.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella flexneri CDC 796-83]
Length = 185
Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 112/175 (64%), Gaps = 2/175 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q PYA
Sbjct: 11 VLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKS-SKGVLRGLHYQLEPYA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L E
Sbjct: 70 QGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLSETAE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+YK T++Y + D G+ W D + I WP ++ +S KD L+ + F
Sbjct: 130 FLYKTTNYYHPDSDRGIVWNDPILSIKWPTIEHNNYILSIKDARAKELHNMKELF 184
>gi|56684535|gb|AAW22498.1| RmlC [Lactobacillus rhamnosus]
Length = 190
Score = 160 bits (406), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 111/176 (63%), Gaps = 1/176 (0%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+ ++T F D+RG+F+ TY+ + E G+++ F QDN S S + G +RG+H+Q PYAQ
Sbjct: 13 VKFVETDVFGDNRGFFTGTYTREKFVEAGIKNDFNQDNQSLSAEAGVLRGMHYQMAPYAQ 72
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G + D+ VDIR+ SPTYG W +S N Q+ +P GFAHGF+TL N
Sbjct: 73 TKLVRVVTGVVEDVLVDIRKGSPTYGHWEGYILSQYNHRQLLVPKGFAHGFITLTPNVNF 132
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+YKV +Y+ E D G+A+ D I I WP+ L +SEKDQ+ P L ++ F Y
Sbjct: 133 VYKVEGYYAPEADRGIAFDDPDIGIDWPMSTAHL-IMSEKDQHHPQLKDAENNFIY 187
>gi|88802242|ref|ZP_01117769.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Polaribacter irgensii 23-P]
gi|88781100|gb|EAR12278.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Polaribacter irgensii 23-P]
Length = 184
Score = 160 bits (405), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 116/179 (64%), Gaps = 2/179 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ F D RG+F ++++ + +E F+QDN S S G +RGLHFQ+ P
Sbjct: 8 IQDVYIIEPSIFGDERGYFLESFNLEKFEENIYPIKFLQDNESKS-SKGVLRGLHFQKTP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ QAKLVRCI GR+ D+AVD+R+ SPTYG V++E+S N Q+++P GFAHGF L
Sbjct: 67 FDQAKLVRCIVGRVMDVAVDLRKGSPTYGKHVAIELSGENKKQLFVPRGFAHGFSVLSET 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YKV + Y+ E+D G+ + D+ ++I W L + + +SEKD++LPF +DSPF +
Sbjct: 127 AVFAYKVDNTYAPEYDFGIRYNDEDLNIDWGLAENEV-QLSEKDKDLPFFKNLDSPFNF 184
>gi|10803348|emb|CAC13136.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gluconacetobacter xylinus]
Length = 185
Score = 160 bits (405), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 109/174 (62%), Gaps = 6/174 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
N+ + +L +F D RG+FS+T+++ +KE+G+ FVQDNHS S G +RGLH Q
Sbjct: 6 FNVAGIILLTPPRFGDERGYFSETFNAARMKEIGIPGPFVQDNHSLSRARGVVRGLHCQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ Q KLVRC G I+D+ VDIR SPT+G WV +S NG Q++IPTGF HGF TL
Sbjct: 66 SPHPQGKLVRCTRGSIWDVGVDIRAGSPTFGQWVGATLSEENGSQLWIPTGFLHGFCTLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL--DTILPSVSEKDQN-LPF 171
N EV YK TD++ + + V W D + I WP+ D IL S KD + LPF
Sbjct: 126 ENAEVQYKCTDYWDRDCERSVRWDDPLLAIDWPVTPKDAIL---SAKDADALPF 176
>gi|82777434|ref|YP_403783.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella dysenteriae Sd197]
gi|81241582|gb|ABB62292.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella dysenteriae Sd197]
Length = 185
Score = 160 bits (405), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 110/164 (67%), Gaps = 2/164 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q PYA
Sbjct: 11 VLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKS-TKGVLRGLHYQLEPYA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRC+ G +FD+AVDIR++SPT+G W+ + +SA N Q++IP GFAHGF+ L E
Sbjct: 70 QGKLVRCVVGEVFDVAVDIRKSSPTFGKWIGVNLSAENKRQLWIPEGFAHGFLVLSETAE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+YK T++Y+ + +++ D +I I WP L + +S KD N
Sbjct: 130 FVYKTTNYYNPSFEKSISYSDPTIKIQWPNLQDMHFKLSNKDLN 173
>gi|329848964|ref|ZP_08263992.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Asticcacaulis biprosthecum
C19]
gi|328844027|gb|EGF93596.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Asticcacaulis biprosthecum
C19]
Length = 181
Score = 160 bits (405), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 115/178 (64%), Gaps = 3/178 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQ 59
+I +++ + D RG+F + + +E ++DV FVQDN S S GTIRGLH+Q
Sbjct: 6 FDIEGPALIRPKMIGDERGFFMEAFKDAWFRE-NVEDVSFVQDNQSLSRQVGTIRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P+ Q KLVRC+ G IFD+AVDIRR S T+G WV ++A G Q+++P GFAH F TL
Sbjct: 65 TAPFGQGKLVRCLKGSIFDVAVDIRRGSATFGKWVGATLTAEKGEQLWVPDGFAHAFCTL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E +TEV YKVT+ YS +D+G+A+ D I I WP +D + +S+KD+ P L+ + S
Sbjct: 125 EPDTEVFYKVTNPYSKPNDAGLAFDDPDIGIIWP-IDIAMAVLSDKDRLQPPLSSLIS 181
>gi|149277136|ref|ZP_01883278.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pedobacter sp. BAL39]
gi|149232013|gb|EDM37390.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pedobacter sp. BAL39]
Length = 184
Score = 160 bits (405), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 80/181 (44%), Positives = 120/181 (66%), Gaps = 8/181 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ + ++D+RG+F +++++K+L + G+ FVQDN SFS G +RGLH Q+ P
Sbjct: 8 IKGLLIVEPKVWKDNRGYFYESFNAKILSDAGIDVTFVQDNQSFS-QKGALRGLHAQKDP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVR I GR+ D+AVDIR++SPT+G +LE+S N LQ+++P GF HGF+TLE +
Sbjct: 67 FAQGKLVRVIQGRVMDVAVDIRKSSPTFGQHFALELSGENHLQLWVPPGFLHGFITLEDD 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW----PLLDTILPSVSEKDQNLPFLNQIDSP 178
T YKV+++Y + GV W D ++I W P + +L S+KDQ LP SP
Sbjct: 127 TIFTYKVSNYYDKNSEIGVIWNDADLNIEWGKEVPESEFLL---SDKDQVLPAFKDFSSP 183
Query: 179 F 179
F
Sbjct: 184 F 184
>gi|145298431|ref|YP_001141272.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142851203|gb|ABO89524.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 183
Score = 160 bits (405), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 110/170 (64%), Gaps = 4/170 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I + + F D RG+F ++++ + +E +G Q F+QDNHS S G +RGLH+Q
Sbjct: 7 SIPEVLIFEPQVFGDERGFFFESFNYQQFEEAVGHQVKFIQDNHSRS-SQGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVRCI G +FD+AVDIR SP +G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 66 PPHAQGKLVRCIVGEVFDVAVDIRETSPNFGQWVGVNLSAENKRQLWIPEGFAHGFLTLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
E++YK T++Y H+ + W D + I WP I+ +S+KD P
Sbjct: 126 TAAEILYKTTNYYQPSHERSIIWNDNVLAIKWPFDKNII--LSKKDSLAP 173
>gi|258517198|ref|YP_003193420.1| dTDP-4-dehydrorhamnose reductase [Desulfotomaculum acetoxidans DSM
771]
gi|257780903|gb|ACV64797.1| dTDP-4-dehydrorhamnose reductase [Desulfotomaculum acetoxidans DSM
771]
Length = 461
Score = 160 bits (405), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 107/178 (60%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N + +++T D+RGWF++TY+ G+ FVQDN S+S GT+RG+HFQ
Sbjct: 7 NFKGLFVIETNVHGDNRGWFTETYTKSKFAAQGIDTDFVQDNQSYSAQKGTLRGIHFQTN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ K++RC G I D VD+R+ S TY W S+E+SA N Q+YIP GF H F+T+
Sbjct: 67 PMAQTKMIRCTRGAIIDTVVDLRKGSDTYKQWYSIELSAENKKQMYIPKGFGHAFLTITE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ EV YKV ++YS E D + + D I I W + + P +S+KD N P L D+ F
Sbjct: 127 DVEVQYKVDEYYSKECDRSIKFNDPEIGIDWGIEN---PVLSQKDLNAPLLKDSDADF 181
>gi|297569754|ref|YP_003691098.1| Sigma 54 interacting domain protein [Desulfurivibrio alkaliphilus
AHT2]
gi|296925669|gb|ADH86479.1| Sigma 54 interacting domain protein [Desulfurivibrio alkaliphilus
AHT2]
Length = 181
Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 112/169 (66%), Gaps = 4/169 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +L+ + F D RG+F ++++ ++ ++ G+ FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPEVMLLEPKVFGDERGFFYESFNRRVFEQATGVSGEFVQDNHSRS-RRGVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
PP AQ KLVR + G +FD+AVD+RR SPT G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 65 LPPKAQGKLVRVVQGEVFDVAVDLRRASPTCGQWVGVHLSAANKHQLWIPPGFAHGFVTL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK TD+Y+ E++ + W D + I+WPL D P ++ KDQ
Sbjct: 125 SETAEFLYKTTDYYAPEYERCIIWNDPDLAISWPLPDP--PQLAAKDQQ 171
>gi|309787874|ref|ZP_07682484.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella dysenteriae 1617]
gi|50982494|gb|AAT91848.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella dysenteriae]
gi|308924273|gb|EFP69770.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella dysenteriae 1617]
Length = 185
Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 110/164 (67%), Gaps = 2/164 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q PYA
Sbjct: 11 VLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKS-TKGVLRGLHYQLEPYA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRC+ G +FD+AVDIR++SPT+G W+ + +SA N Q++IP GFAHGF+ L E
Sbjct: 70 QGKLVRCVVGEVFDVAVDIRKSSPTFGKWIGVNLSAENKRQLWIPEGFAHGFLVLSETAE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+YK T++Y+ + +++ D +I I WP L + +S KD N
Sbjct: 130 FVYKTTNYYNPSFEKSISYSDPTIKIQWPNLQDMHFKLSNKDLN 173
>gi|298375207|ref|ZP_06985164.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_1_19]
gi|301310780|ref|ZP_07216719.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 20_3]
gi|298267707|gb|EFI09363.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_1_19]
gi|300832354|gb|EFK62985.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 20_3]
Length = 193
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/181 (44%), Positives = 118/181 (65%), Gaps = 4/181 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V I++ + F+D+RG+F +++S + +E + FVQDN S S G +RGLHFQ+P
Sbjct: 7 DIEGVVIIEPKVFDDARGYFFESFSQREFEEKVRKINFVQDNESMS-SYGVMRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ Q+KLVRC+ G + D+AVDIR+ SPTYG V++E+S N Q ++P GFAHGF L
Sbjct: 66 PFTQSKLVRCVKGCVLDVAVDIRKGSPTYGKHVAVELSEENHRQFFVPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFE 180
YK +FY+ + D G+ +D+S+ I W + +D +L +SEKD P L DSPF+
Sbjct: 126 IAVFQYKCDNFYAPQADGGIRIKDESLGIDWRIPMDKVL--LSEKDIKHPCLEDFDSPFD 183
Query: 181 Y 181
Y
Sbjct: 184 Y 184
>gi|227550496|ref|ZP_03980545.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium TX1330]
gi|257888523|ref|ZP_05668176.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
1,141,733]
gi|257897102|ref|ZP_05676755.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium Com12]
gi|257899041|ref|ZP_05678694.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium Com15]
gi|293377325|ref|ZP_06623529.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium PC4.1]
gi|293572519|ref|ZP_06683498.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium E980]
gi|227180397|gb|EEI61369.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium TX1330]
gi|257824577|gb|EEV51509.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
1,141,733]
gi|257833667|gb|EEV60088.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium Com12]
gi|257836953|gb|EEV62027.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium Com15]
gi|291607436|gb|EFF36779.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium E980]
gi|292644017|gb|EFF62123.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium PC4.1]
Length = 190
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 111/182 (60%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ F D RG+F+++YS E GL FVQDNHS S + G +RGLHFQ+
Sbjct: 7 KLTDVKIVEMDVFGDHRGFFTESYSKAKFAEHGLDYDFVQDNHSLSAEAGVLRGLHFQKG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ VDIR+ SPTYG W +S +N Q+ +P G+AHGF+TL
Sbjct: 67 EAAQTKLIRVVTGAVLDVVVDIRKGSPTYGQWDGFILSEHNHRQLLVPKGYAHGFVTLTP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS--PF 179
N +YK ++Y+ E D G+A+ D + I WP +D +SEKD P L + ++ PF
Sbjct: 127 NVNFLYKCDNYYNAEADGGIAFDDPDLAIDWP-IDPSRAIMSEKDHRHPTLKEFEAENPF 185
Query: 180 EY 181
Y
Sbjct: 186 VY 187
>gi|294672873|ref|YP_003573489.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella ruminicola 23]
gi|294473377|gb|ADE82766.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella ruminicola 23]
Length = 184
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 115/182 (63%), Gaps = 6/182 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I+ V I++ R FEDSRG+F +++S + +E FVQDN S S G +RGLHFQRP
Sbjct: 7 SIDGVFIIEPRIFEDSRGYFFESFSQREFEEKIGPINFVQDNESKS-SYGVMRGLHFQRP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ Q+KLVRC+ G + D+AVDIR+ SPTYG V++E++ +N Q +IP GFAHGF L
Sbjct: 66 PFTQSKLVRCVKGAVLDVAVDIRKGSPTYGQHVAVELTEDNHRQFFIPKGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPF 179
YK +FY E D G++ D+S++I W P IL S+KD P L ++PF
Sbjct: 126 TAVFQYKCDEFYHPEADGGISILDESLNIDWHIPTDKAIL---SDKDTKHPLLKDFETPF 182
Query: 180 EY 181
Y
Sbjct: 183 NY 184
>gi|168481330|gb|ACA24817.1| RmlC [Escherichia coli]
Length = 182
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 112/174 (64%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKS-SKGVLRGLHYQLE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 67 PYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++Y E D G+ W D I I W + +S+KD+ P + +
Sbjct: 127 TAEFVYKTTNYYHPESDRGIRWDDPYIGIKWENEYNV--KLSDKDKKNPTMKDV 178
>gi|184154573|ref|YP_001842913.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus fermentum IFO
3956]
gi|183225917|dbj|BAG26433.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus fermentum IFO
3956]
Length = 193
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 112/182 (61%), Gaps = 5/182 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V+++ F D RG+F++TYS + KE G+ FVQDN S S G +RGLHFQR
Sbjct: 11 LQDVKLITPAVFGDHRGFFTETYSDRDFKEAGINFDFVQDNQSLSAQAGVLRGLHFQRGR 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KL+R + G + D+ VD+R+ SPTY W +SA+N Q+ +P GFAHGF+TL N
Sbjct: 71 AAQTKLIRVVTGAVLDVIVDLRKGSPTYKQWEGYILSASNHRQLLVPRGFAHGFVTLTDN 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQI--DSPF 179
+YK ++Y E D G++++ +DI WP+ LD + SEKD N P L + D+PF
Sbjct: 131 VNFVYKCDNYYDAEADGGISFKTPELDIDWPIDLDKAI--TSEKDANQPTLTEFEKDNPF 188
Query: 180 EY 181
Y
Sbjct: 189 VY 190
>gi|259503868|ref|ZP_05746770.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus antri DSM
16041]
gi|259168169|gb|EEW52664.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus antri DSM
16041]
Length = 191
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 110/177 (62%), Gaps = 3/177 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
+I++T F D RG+F++TY+ + G+ F QDN S S + G +RG+H+Q PY+Q
Sbjct: 13 AKIVETDVFGDHRGFFTETYTKNKFEAAGINVEFTQDNQSLSVEPGVLRGMHYQLAPYSQ 72
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KL+R + G I+D+ VDIR+ SP YG W +S N Q+ +P GFAHGF+TL N V
Sbjct: 73 TKLLRAVTGAIYDVIVDIRKGSPAYGKWEGFILSEYNHRQLLVPKGFAHGFVTLTPNVNV 132
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFEY 181
YKV +Y+ E D G+A+ D +DI WP+ +D ++ +SEKDQ+ P + F Y
Sbjct: 133 AYKVDGYYAPEADRGIAFDDPDLDIKWPMPVDHLI--LSEKDQHHPAFKDAEINFTY 187
>gi|289577889|ref|YP_003476516.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoanaerobacter italicus
Ab9]
gi|289527602|gb|ADD01954.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoanaerobacter italicus
Ab9]
Length = 183
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 108/173 (62%), Gaps = 2/173 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++T FED+RG+F ++Y+ K K G+ VFVQDN S S G +RGLHFQ+
Sbjct: 11 IEGLYIIETGVFEDNRGYFMESYNYKDFKAAGIDAVFVQDNQSKS-KKGVLRGLHFQKK- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR + G +FD+AVD+R+NS TYG WV + +S N Q YIP GFAHGF+ L
Sbjct: 69 HPQGKLVRVLKGEVFDVAVDLRKNSKTYGKWVGVILSDKNKRQFYIPEGFAHGFLVLSDE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YK TDFY + + G+ W D I+I WPL +SEKD+ P L +
Sbjct: 129 AEFFYKCTDFYYPDDEGGIIWNDPDINIQWPLEGIEEVILSEKDKKWPRLRDL 181
>gi|188588490|ref|YP_001922380.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum E3 str.
Alaska E43]
gi|188498771|gb|ACD51907.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum E3 str.
Alaska E43]
Length = 179
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 112/178 (62%), Gaps = 5/178 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V I++ + F D RGWF +TYS E+ FVQDN S+S + G +RG+HFQ
Sbjct: 7 KLDGVYIVEPQVFGDERGWFMETYSKIKTPEIACD--FVQDNQSYSKEKGILRGIHFQNG 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQAKLVRC++G + D+AVD+R+ S TY WV++E+SA N Q++IP GF HGF+TL
Sbjct: 65 EHAQAKLVRCVSGAVLDVAVDLRKKSLTYKQWVAVELSAENKKQLFIPRGFGHGFVTLTK 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ E +YK ++Y+ E D + + D I + W + + IL SEKD+ P L D F
Sbjct: 125 DVEFVYKTDNYYNYESDRSIRFDDPEIGVEWGIENPIL---SEKDKKAPLLQDSDCTF 179
>gi|256963468|ref|ZP_05567639.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis
HIP11704]
gi|307272375|ref|ZP_07553631.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0855]
gi|256953964|gb|EEU70596.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis
HIP11704]
gi|306510929|gb|EFM79943.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0855]
Length = 190
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/181 (44%), Positives = 110/181 (60%), Gaps = 9/181 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+I++ F D RG+F+++YS E GL FVQDNHS S + G +RGLHFQ+ AQ
Sbjct: 11 VKIIEMDVFGDHRGFFTESYSKAKFAEHGLDFDFVQDNHSLSTEAGVLRGLHFQKGEAAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KL+R + G + D+ VDIRR SPTYG W +S +N Q+ +P GFAHGF+TL N
Sbjct: 71 TKLIRVVTGAVLDVIVDIRRGSPTYGQWEGYILSEHNHRQLLVPKGFAHGFVTLTPNVNF 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS---VSEKDQNLPFLNQIDS--PFE 180
+YK ++Y+ D G+A+ D ++ I WP I P SEKDQ P L + ++ PF
Sbjct: 131 MYKCDNYYNAAADGGIAFNDPALAIDWP----IAPEKAITSEKDQKHPTLKEFEAENPFI 186
Query: 181 Y 181
Y
Sbjct: 187 Y 187
>gi|168481319|gb|ACA24807.1| RmlC [Shigella dysenteriae]
Length = 182
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 112/174 (64%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKS-SKGVLRGLHYQLE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 67 PYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++Y E D G+ W D I I W + +S+KD+ P + +
Sbjct: 127 TAEFVYKTTNYYHPESDRGIRWDDPYIGIKWENEYNV--RLSDKDKKNPTMKDV 178
>gi|227887091|ref|ZP_04004896.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli 83972]
gi|227835441|gb|EEJ45907.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli 83972]
gi|297499073|gb|ADI43259.1| RmlC [Escherichia coli]
gi|307554110|gb|ADN46885.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli ABU 83972]
Length = 180
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 111/167 (66%), Gaps = 4/167 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVLILEPEVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKSIK-GVLRGLHYQLE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVRC+ G +FD+AVDIR++S T+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 67 PYAQGKLVRCVVGEVFDVAVDIRKSSGTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
EV+YK +Y+ H+ + W D ++I WP T L ++S+KD N
Sbjct: 127 LAEVLYKTNQYYAPSHERNIIWNDPLLNIKWP--RTALITLSDKDAN 171
>gi|291559812|emb|CBL38612.1| dTDP-4-dehydrorhamnose 3,5-epimerase [butyrate-producing bacterium
SSC/2]
Length = 184
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 106/167 (63%), Gaps = 2/167 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + +++ F+D RG+F +TY+ +KE GL VFVQDN S S G +RGLHFQ+
Sbjct: 10 DIEGLYVIEPTVFKDERGYFVETYNQNDMKEAGLDMVFVQDNQSMS-TRGVLRGLHFQKQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G++FD+AVD+R +S TYG W +E+SA N Q YIP GFAHGF+ L
Sbjct: 69 -FPQGKLVRVVRGKVFDVAVDLRSDSKTYGKWFGVELSAENMKQFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E YK TDFY + G+ W D I + WPL + + +SEKDQ
Sbjct: 128 EAEFCYKCTDFYHPGDEGGLTWNDPEIGVEWPLEEGVDLIISEKDQK 174
>gi|258543636|ref|YP_003189069.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetobacter pasteurianus IFO
3283-01]
gi|256634714|dbj|BAI00690.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetobacter pasteurianus IFO
3283-01]
gi|256637770|dbj|BAI03739.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetobacter pasteurianus IFO
3283-03]
gi|256640824|dbj|BAI06786.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetobacter pasteurianus IFO
3283-07]
gi|256643879|dbj|BAI09834.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetobacter pasteurianus IFO
3283-22]
gi|256646934|dbj|BAI12882.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetobacter pasteurianus IFO
3283-26]
gi|256649987|dbj|BAI15928.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetobacter pasteurianus IFO
3283-32]
gi|256652977|dbj|BAI18911.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256656031|dbj|BAI21958.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetobacter pasteurianus IFO
3283-12]
Length = 190
Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 110/185 (59%), Gaps = 5/185 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V ++ +F D+RG+FS+TY+ + ++E G+ + FVQDN S S G IRGLH Q
Sbjct: 6 LAIPDVILITPPRFGDNRGFFSETYNIERMREAGITEPFVQDNQSLSRQKGVIRGLHCQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC G I+D+AVD R SPTYG WV+ E+S N Q++IP GF HGF TL
Sbjct: 66 DPFAQGKLVRCTRGAIWDVAVDARTGSPTYGKWVAAELSEENWSQLWIPPGFLHGFCTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL--DTILPSVSEKDQNLPFLNQIDSP 178
N EV YK T YS + V W + I WP+ D +L SEKD P +
Sbjct: 126 ENAEVQYKCTALYSKASERAVIWNSAELGIDWPVKAEDAVL---SEKDLLAPEFSAAKGW 182
Query: 179 FEYDG 183
F+Y G
Sbjct: 183 FQYVG 187
>gi|328957829|ref|YP_004375215.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Carnobacterium sp. 17-4]
gi|328674153|gb|AEB30199.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Carnobacterium sp. 17-4]
Length = 216
Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 120/193 (62%), Gaps = 3/193 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N+ V+I++ F D RG+F+++Y+ + E G+ F+QDNHS S + G +RG+HFQ
Sbjct: 7 NLQDVKIIEMAVFGDHRGFFTESYTKEKFLEAGIIIDFIQDNHSLSVEPGVLRGMHFQTL 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVR G I+D+ VD+R SPTYG W +S N Q+ +P GFAH F+TL
Sbjct: 67 EKAQTKLVRATTGVIYDVIVDMRVGSPTYGQWEGYILSEFNHRQLLVPKGFAHAFVTLTP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFE 180
N V YKV +++S EHD G+A+ D +++I WP+ +D ++ +SEKD P L + ++PF
Sbjct: 127 NCNVQYKVDEYFSSEHDGGIAFDDPALNIQWPMPIDKLV--LSEKDTKHPKLAEFNNPFV 184
Query: 181 YDGLPLLSLNMER 193
Y L + E+
Sbjct: 185 YKKFKLGDICNEK 197
>gi|167765914|ref|ZP_02437967.1| hypothetical protein CLOSS21_00405 [Clostridium sp. SS2/1]
gi|167712412|gb|EDS22991.1| hypothetical protein CLOSS21_00405 [Clostridium sp. SS2/1]
Length = 194
Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 106/167 (63%), Gaps = 2/167 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + +++ F+D RG+F +TY+ +KE GL VFVQDN S S G +RGLHFQ+
Sbjct: 20 DIEGLYVIEPTVFKDERGYFVETYNQNDMKEAGLDMVFVQDNQSMS-TRGVLRGLHFQKQ 78
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G++FD+AVD+R +S TYG W +E+SA N Q YIP GFAHGF+ L
Sbjct: 79 -FPQGKLVRVVRGKVFDVAVDLRSDSKTYGKWFGVELSAENMKQFYIPEGFAHGFLVLSD 137
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E YK TDFY + G+ W D I + WPL + + +SEKDQ
Sbjct: 138 EAEFCYKCTDFYHPGDEGGLTWNDPEIGVEWPLEEGVDLIISEKDQK 184
>gi|183597260|ref|ZP_02958753.1| hypothetical protein PROSTU_00504 [Providencia stuartii ATCC 25827]
gi|188023575|gb|EDU61615.1| hypothetical protein PROSTU_00504 [Providencia stuartii ATCC 25827]
Length = 179
Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 107/162 (66%), Gaps = 4/162 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I++ + FED RG+F ++++ K E +G FVQDNHS S G +RGLH+Q PYA
Sbjct: 11 VLIIEPKIFEDERGFFFESFNQKQFDEAVGYPVNFVQDNHSKSVK-GVLRGLHYQEEPYA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRCI G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L N E
Sbjct: 70 QGKLVRCIVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLSENAE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK T FY+ + ++ + W D + I W P +S+KD
Sbjct: 130 FVYKTTKFYNPKSENTILWNDNKLSINWN--SESHPIISKKD 169
>gi|251780228|ref|ZP_04823148.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243084543|gb|EES50433.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 179
Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 112/178 (62%), Gaps = 5/178 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V I++ + F D RGWF +TYS E+ FVQDN S+S + G +RG+HFQ
Sbjct: 7 KLDGVYIVEPQVFGDERGWFMETYSKIKTPEIACD--FVQDNQSYSKEKGILRGIHFQNG 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQAKLVRC++G + D+AVD+R+ S TY WV++E+SA N Q++IP GF HGF+TL
Sbjct: 65 EHAQAKLVRCVSGAVLDVAVDLRKKSLTYKQWVAVELSAENKKQLFIPRGFGHGFVTLTN 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ E +YK ++Y+ E D + + D I + W + + IL SEKD+ P L D F
Sbjct: 125 DVEFVYKTDNYYNYESDRSIRFDDPEIGVEWGIENPIL---SEKDKKAPLLQDSDCTF 179
>gi|63033905|gb|AAY28256.1| RmlC [Escherichia coli]
Length = 188
Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 107/155 (69%), Gaps = 4/155 (2%)
Query: 14 FEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
+ED RG+F ++Y+ K ++ +G FVQDNHS S G +RGLHFQ+ PY QAKLVRCI
Sbjct: 19 YEDERGFFYESYNEKKFMETIGASIKFVQDNHSKS-SKGVLRGLHFQKNPYEQAKLVRCI 77
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
G ++D+AVDIR++SPT+G W + +S N Q++IP GFAHGF+TL E +YK T++
Sbjct: 78 RGEVYDVAVDIRKDSPTFGQWFGVNLSDENKKQLWIPEGFAHGFITLSDVAEFVYKTTNY 137
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
Y+ + + W DK ++I WPL + ++ VS KDQ
Sbjct: 138 YAPASEYCLKWDDKDLNIQWPLKNALI--VSSKDQ 170
>gi|58039513|ref|YP_191477.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gluconobacter oxydans 621H]
gi|58001927|gb|AAW60821.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gluconobacter oxydans 621H]
Length = 187
Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/184 (45%), Positives = 111/184 (60%), Gaps = 5/184 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V ++ +F D+RG+FS+TY+ + + E G+ FVQDN S S G +RGLH Q
Sbjct: 6 LSIPEVILVTPPRFGDNRGFFSETYNVERMGEAGIDLPFVQDNQSLSRQKGVVRGLHCQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PY Q KLVR G I+D+AVD R SPTYG WV+ E+SA N Q++IP GF HGF+TLE
Sbjct: 66 APYEQGKLVRVTRGAIWDVAVDARTGSPTYGKWVAAELSAENWSQLWIPPGFLHGFVTLE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQIDSP 178
NTEV YK T YS + V W + I WP+ D IL S+KD+ P +
Sbjct: 126 ENTEVQYKCTSLYSKVSERAVIWNCPELKIDWPVSEADAIL---SDKDKVAPHFAEAKGW 182
Query: 179 FEYD 182
F Y+
Sbjct: 183 FSYE 186
>gi|332686303|ref|YP_004456077.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Melissococcus plutonius ATCC
35311]
gi|332370312|dbj|BAK21268.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Melissococcus plutonius ATCC
35311]
Length = 190
Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 108/174 (62%), Gaps = 1/174 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V+I++ F DSRG+F+++YS + + GL FVQDNHS S + G +RGLHFQ+
Sbjct: 8 LQDVKIIEMDVFGDSRGFFTESYSRQKFETFGLNFDFVQDNHSLSSEAGVLRGLHFQKGK 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLVR I G + D+ VDIR+NSPTYG W S +S N Q+ +P G+AHGF+TL N
Sbjct: 68 AAQTKLVRVITGALLDVIVDIRKNSPTYGKWESYILSEYNHRQLLVPKGYAHGFVTLTPN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YK ++Y+ E D G+A+ D + I WP +D SEKD+ P + +
Sbjct: 128 VNFAYKCDNYYNDEADGGIAFDDPDLGIAWP-MDLNKAITSEKDKKHPTFKEFE 180
>gi|254478574|ref|ZP_05091948.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Carboxydibrachium pacificum
DSM 12653]
gi|214035503|gb|EEB76203.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Carboxydibrachium pacificum
DSM 12653]
Length = 185
Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 109/175 (62%), Gaps = 2/175 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++T FED+RG+F ++Y+ + K G+ VFVQDN S S G +RGLHFQ+
Sbjct: 11 IEGLYIIETGIFEDNRGYFMESYNYRDFKAAGIDAVFVQDNQSKS-KKGVLRGLHFQKK- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR + G +FD+AVD+R+NS TYG WV + +S N Q YIP GFAHGF+ L
Sbjct: 69 HPQGKLVRVLKGEVFDVAVDLRKNSKTYGKWVGVILSDKNKRQFYIPEGFAHGFLVLSDE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E YK TDFY + + G+ W D I+I WPL +SEKD+ P L ++
Sbjct: 129 AEFFYKCTDFYYPDDEGGIIWNDPDINIQWPLEGIEEVILSEKDKKWPRLRDLEE 183
>gi|124021807|ref|YP_001016114.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prochlorococcus marinus str.
MIT 9303]
gi|123962093|gb|ABM76849.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prochlorococcus marinus str.
MIT 9303]
Length = 201
Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 119/186 (63%), Gaps = 10/186 (5%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL---GLQDV--FVQDNHSFSFDCGTIRG 55
+++N +L + D RG+F ++++ + +E+ Q+ FVQDNHS S CG +RG
Sbjct: 12 IHLNGPLLLSPQVHGDERGFFFESWNQRRWQEVLASHRQEAPEFVQDNHSRS-SCGVLRG 70
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q PP+ Q KLVRC+ G IFD+A+D+RR+S TYG W +SA N Q++IP GFAHG
Sbjct: 71 LHYQLPPHPQGKLVRCVVGEIFDVAIDLRRSSATYGQWAGAHLSAENHQQLWIPVGFAHG 130
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPF 171
F+TL + EV+YK TDF+S + + + W D + I+WP++ D I S+S+KD
Sbjct: 131 FLTLSESAEVLYKATDFWSRDCERAIRWDDPRLGISWPVVHVDGDQIPASLSQKDAVASL 190
Query: 172 LNQIDS 177
+ ++ +
Sbjct: 191 MEELSA 196
>gi|254303462|ref|ZP_04970820.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
gi|148323654|gb|EDK88904.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
Length = 191
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 116/174 (66%), Gaps = 6/174 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ + FEDSRG F ++Y+ K++G+ ++FVQDNHS S G +RGLHFQ+
Sbjct: 9 IENLFIIEPQIFEDSRGCFFESYNYNTFKKIGIDNIFVQDNHSKSLK-GVLRGLHFQKED 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+QAKL+ + G I DI VD+R+NS T+G + ++EI+ NN ++IP GFAHGF+TLE
Sbjct: 68 YSQAKLISVLKGGILDIVVDLRKNSKTFGKYFAMEINENNKKMLFIPKGFAHGFLTLEDG 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL----LDTILPSVSEKD-QNLPF 171
TE+ YK +FY+ + + G+ W D+ ++I W +D +SEKD +N+ F
Sbjct: 128 TEIFYKCDNFYNPQSEGGIIWNDRDLNIDWNFKKYNIDKNELIISEKDKKNISF 181
>gi|150019564|ref|YP_001311818.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium beijerinckii
NCIMB 8052]
gi|149906029|gb|ABR36862.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium beijerinckii
NCIMB 8052]
Length = 183
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 109/177 (61%), Gaps = 5/177 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I++ + F D RGWF +TYS E+ F QDN S+S G +RG+HFQ AQ
Sbjct: 11 VYIVEPQVFGDERGWFMETYSRIKTPEIACD--FCQDNQSYSKGKGILRGIHFQNGENAQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKLVRC+ G + D+AVD+R+ SPTY WV++E+SA N Q++IP GF HGF+TL + E
Sbjct: 69 AKLVRCVKGAVLDVAVDLRKGSPTYKEWVAVELSAENKKQLFIPRGFGHGFLTLTDDVEF 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
+YK ++Y+ E D + + D I + W + + IL SEKD+ P L D F Y+
Sbjct: 129 VYKTDNYYNYESDRSIKFDDPEIGVEWGIENPIL---SEKDKKAPLLKDSDCTFIYN 182
>gi|307265775|ref|ZP_07547326.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306919170|gb|EFN49393.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 185
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 109/176 (61%), Gaps = 2/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++T FED+RG+F ++Y+ + K G+ VFVQDN S S G +RGLHFQ+
Sbjct: 10 EIEGLYIIETGIFEDNRGYFMESYNCRDFKAAGIDAVFVQDNQSKS-KKGVLRGLHFQKK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R+NS TYG WV + +S N Q YIP GFAHGF+ L
Sbjct: 69 -HPQGKLVRVLKGEVFDVAVDLRKNSKTYGKWVGVILSDKNKRQFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E YK TDFY + + G+ W D I+I WPL +SEKD+ P L ++
Sbjct: 128 EAEFFYKCTDFYYPDDEGGIIWNDPDINIQWPLEGIEEIILSEKDKKWPRLRDLEE 183
>gi|209693793|ref|YP_002261721.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aliivibrio salmonicida
LFI1238]
gi|209693856|ref|YP_002261784.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aliivibrio salmonicida
LFI1238]
gi|208007744|emb|CAQ77862.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aliivibrio salmonicida
LFI1238]
gi|208007807|emb|CAQ77931.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aliivibrio salmonicida
LFI1238]
Length = 185
Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 112/176 (63%), Gaps = 6/176 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
NI V+I + F D RG+F +T+S K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 NIPDVKIFEPTVFGDERGFFMETWSQKKFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+ VDIR NSPT+G WV +SA N Q+++P GFAHGF
Sbjct: 66 TE-NTQGKLVRVVSGEVFDVVVDIRENSPTFGQWVGTYLSAENKHQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ E +YK TD+Y+ + + +AW DK+I I WP+ T P +SEKD+N L+Q+
Sbjct: 125 SEDAEFVYKCTDYYNPKSEISIAWDDKAIGIEWPI--TTPPQLSEKDKNAMILSQV 178
>gi|262374524|ref|ZP_06067798.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acinetobacter junii SH205]
gi|262310520|gb|EEY91610.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acinetobacter junii SH205]
Length = 191
Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 112/173 (64%), Gaps = 6/173 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ---DV--FVQDNHSFSFDCGTIRGLH 57
I + IL+ + F D RGWF ++++ K + L+ D+ FVQDNHSFS G +RGLH
Sbjct: 8 IKGLLILEPKVFGDDRGWFMESFNQKSFESALLERGMDIPQFVQDNHSFS-QKGVLRGLH 66
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
+Q P AQ KLVR + GR +D+AVDIR+NSPT+G WV +E++ N Q +IP GFAHGF+
Sbjct: 67 YQLNPCAQGKLVRVVQGRAWDVAVDIRQNSPTFGEWVGIELTGENHRQFWIPAGFAHGFI 126
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
LE NT+ +YK T++YS E + + W D I WP+ + +++KD+ P
Sbjct: 127 ALEDNTQFLYKTTNYYSKECERSIVWNDVDFAIEWPIESGLELKLTDKDKLAP 179
>gi|312877140|ref|ZP_07737111.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caldicellulosiruptor
lactoaceticus 6A]
gi|311796114|gb|EFR12472.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caldicellulosiruptor
lactoaceticus 6A]
Length = 193
Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 111/174 (63%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ FED+RG+F ++++ K E+GL FVQDNHS S G +RGLHFQ P
Sbjct: 11 IKDLYIIEPTVFEDNRGFFMESWNEKEFNEIGLNIKFVQDNHSRS-KKGVLRGLHFQEP- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q KLVR I G +FD+AVDIR +SPT+ W + + +N +YIP GF HGF+TL
Sbjct: 69 YPQGKLVRVIRGAVFDVAVDIREDSPTFKKWFGIVLDEHNRRMLYIPEGFLHGFLTLSEW 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL--PSVSEKDQNLPFLNQ 174
+V+YK T++Y E+D G+ W D ++I WPL + + P +SEKD LP +
Sbjct: 129 ADVLYKATEYYYKEYDRGIIWYDPDLEIKWPLEEYGIDKPILSEKDSQLPTFEE 182
>gi|256961442|ref|ZP_05565613.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis Merz96]
gi|293382820|ref|ZP_06628741.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis R712]
gi|293387971|ref|ZP_06632504.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis S613]
gi|312905903|ref|ZP_07764917.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis DAPTO
512]
gi|312908949|ref|ZP_07767812.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis DAPTO
516]
gi|256951938|gb|EEU68570.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis Merz96]
gi|291079811|gb|EFE17175.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis R712]
gi|291082627|gb|EFE19590.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis S613]
gi|310628070|gb|EFQ11353.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis DAPTO
512]
gi|311290733|gb|EFQ69289.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis DAPTO
516]
Length = 190
Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 110/181 (60%), Gaps = 9/181 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+I++ F D RG+F+++YS E GL FVQDNHS S + G +RGLHFQ+ AQ
Sbjct: 11 VKIIEMDVFGDHRGFFTESYSKAKFAEHGLDFDFVQDNHSLSTEAGVLRGLHFQKGEAAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KL+R + G + D+ VDIR+ SPTYG W +S +N Q+ +P GFAHGF+TL N
Sbjct: 71 TKLIRVVTGAVLDVIVDIRKGSPTYGQWEGYILSEHNHHQLLVPKGFAHGFVTLTPNVNF 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS---VSEKDQNLPFLNQIDS--PFE 180
+YK ++Y+ D G+A+ D ++ I WP I P SEKDQ P L + ++ PF
Sbjct: 131 MYKCDNYYNAAADGGIAFNDPALAIDWP----IAPEKAITSEKDQKHPTLKEFEAENPFI 186
Query: 181 Y 181
Y
Sbjct: 187 Y 187
>gi|315160175|gb|EFU04192.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0312]
Length = 190
Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 110/181 (60%), Gaps = 9/181 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+I++ F D RG+F+++YS E GL FVQDNHS S + G +RGLHFQ+ AQ
Sbjct: 11 VKIIEMDVFGDHRGFFTESYSKAKFAEHGLDFDFVQDNHSLSTEAGVLRGLHFQKGEAAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KL+R + G + D+ VDIR+ SPTYG W +S +N Q+ +P GFAHGF+TL N
Sbjct: 71 TKLIRVVTGAVLDVIVDIRKGSPTYGQWEGYILSEHNHRQLLVPKGFAHGFVTLTPNVNF 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS---VSEKDQNLPFLNQIDS--PFE 180
+YK ++Y+ D G+A+ D ++ I WP I P SEKDQ P L + ++ PF
Sbjct: 131 MYKCDNYYNAAADGGIAFNDPALAIDWP----IAPEKAITSEKDQKHPTLKEFEAENPFI 186
Query: 181 Y 181
Y
Sbjct: 187 Y 187
>gi|29376701|ref|NP_815855.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis V583]
gi|227520248|ref|ZP_03950297.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0104]
gi|227555319|ref|ZP_03985366.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis HH22]
gi|229545293|ref|ZP_04434018.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX1322]
gi|229549528|ref|ZP_04438253.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis ATCC
29200]
gi|255972231|ref|ZP_05422817.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis T1]
gi|255975343|ref|ZP_05425929.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis T2]
gi|256617233|ref|ZP_05474079.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis ATCC
4200]
gi|256853643|ref|ZP_05559008.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis T8]
gi|256956580|ref|ZP_05560751.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis DS5]
gi|257079506|ref|ZP_05573867.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis JH1]
gi|257082114|ref|ZP_05576475.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis E1Sol]
gi|257084729|ref|ZP_05579090.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis Fly1]
gi|257087325|ref|ZP_05581686.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis D6]
gi|257090459|ref|ZP_05584820.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis CH188]
gi|257416506|ref|ZP_05593500.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis
AR01/DG]
gi|257419747|ref|ZP_05596741.1| dTDP-4-dehydrorhamnose-3,5-epimerase [Enterococcus faecalis T11]
gi|257422093|ref|ZP_05599083.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis X98]
gi|294779045|ref|ZP_06744458.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis PC1.1]
gi|300861183|ref|ZP_07107270.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TUSoD
Ef11]
gi|307270367|ref|ZP_07551672.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX4248]
gi|307277277|ref|ZP_07558381.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX2134]
gi|307281879|ref|ZP_07562094.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0860]
gi|307286604|ref|ZP_07566696.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0109]
gi|307292430|ref|ZP_07572286.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0411]
gi|312901449|ref|ZP_07760724.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0470]
gi|312903793|ref|ZP_07762966.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0635]
gi|312953335|ref|ZP_07772177.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0102]
gi|29344165|gb|AAO81925.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis V583]
gi|227072327|gb|EEI10290.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0104]
gi|227175530|gb|EEI56502.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis HH22]
gi|229305346|gb|EEN71342.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis ATCC
29200]
gi|229309643|gb|EEN75630.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX1322]
gi|255963249|gb|EET95725.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis T1]
gi|255968215|gb|EET98837.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis T2]
gi|256596760|gb|EEU15936.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis ATCC
4200]
gi|256710586|gb|EEU25629.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis T8]
gi|256947076|gb|EEU63708.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis DS5]
gi|256987536|gb|EEU74838.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis JH1]
gi|256990144|gb|EEU77446.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis E1Sol]
gi|256992759|gb|EEU80061.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis Fly1]
gi|256995355|gb|EEU82657.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis D6]
gi|256999271|gb|EEU85791.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis CH188]
gi|257158334|gb|EEU88294.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis
ARO1/DG]
gi|257161575|gb|EEU91535.1| dTDP-4-dehydrorhamnose-3,5-epimerase [Enterococcus faecalis T11]
gi|257163917|gb|EEU93877.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis X98]
gi|294453875|gb|EFG22264.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis PC1.1]
gi|300850222|gb|EFK77972.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TUSoD
Ef11]
gi|306496559|gb|EFM66120.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0411]
gi|306502315|gb|EFM71596.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0109]
gi|306503833|gb|EFM73055.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0860]
gi|306506207|gb|EFM75373.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX2134]
gi|306513275|gb|EFM81902.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX4248]
gi|310628723|gb|EFQ12006.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0102]
gi|310632867|gb|EFQ16150.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0635]
gi|311291438|gb|EFQ69994.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0470]
gi|315025875|gb|EFT37807.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX2137]
gi|315028190|gb|EFT40122.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX4000]
gi|315033452|gb|EFT45384.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0017]
gi|315035720|gb|EFT47652.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0027]
gi|315146138|gb|EFT90154.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX2141]
gi|315146325|gb|EFT90341.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX4244]
gi|315149175|gb|EFT93191.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0012]
gi|315154455|gb|EFT98471.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0031]
gi|315157127|gb|EFU01144.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0043]
gi|315161848|gb|EFU05865.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0645]
gi|315164320|gb|EFU08337.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX1302]
gi|315171507|gb|EFU15524.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX1342]
gi|315173060|gb|EFU17077.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX1346]
gi|315575180|gb|EFU87371.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis
TX0309B]
gi|315578166|gb|EFU90357.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0630]
gi|315582607|gb|EFU94798.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis
TX0309A]
gi|327535586|gb|AEA94420.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis OG1RF]
Length = 190
Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 110/181 (60%), Gaps = 9/181 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+I++ F D RG+F+++YS E GL FVQDNHS S + G +RGLHFQ+ AQ
Sbjct: 11 VKIIEMDVFGDHRGFFTESYSKAKFAEHGLDFDFVQDNHSLSTEAGVLRGLHFQKGEAAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KL+R + G + D+ VDIR+ SPTYG W +S +N Q+ +P GFAHGF+TL N
Sbjct: 71 TKLIRVVTGAVLDVIVDIRKGSPTYGQWEGYILSEHNHRQLLVPKGFAHGFVTLTPNVNF 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS---VSEKDQNLPFLNQIDS--PFE 180
+YK ++Y+ D G+A+ D ++ I WP I P SEKDQ P L + ++ PF
Sbjct: 131 MYKCDNYYNAAADGGIAFNDPALAIDWP----IAPEKAITSEKDQKHPTLKEFEAENPFI 186
Query: 181 Y 181
Y
Sbjct: 187 Y 187
>gi|3608395|gb|AAC35921.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis OG1RF]
Length = 190
Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 110/181 (60%), Gaps = 9/181 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+I++ F D RG+F+++YS E GL FVQDNHS S + G +RGLHFQ+ AQ
Sbjct: 11 VKIIEMDVFGDHRGFFTESYSKAKFAEHGLDFDFVQDNHSLSTEAGVLRGLHFQKGEAAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KL+R + G + D+ VDIR+ SPTYG W +S +N Q+ +P GFAHGF+TL N
Sbjct: 71 TKLIRVVTGAVLDVIVDIRKGSPTYGQWEGYILSEHNHRQLLVPKGFAHGFVTLTPNVNF 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS---VSEKDQNLPFLNQIDS--PFE 180
+YK ++Y+ D G+A+ D ++ I WP I P SEKDQ P L + ++ PF
Sbjct: 131 MYKCDNYYNAAADGGIAFNDPALAIDWP----IAPEKAITSEKDQKHPTLKEFEAENPFI 186
Query: 181 Y 181
Y
Sbjct: 187 Y 187
>gi|256762995|ref|ZP_05503575.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis T3]
gi|256684246|gb|EEU23941.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis T3]
Length = 190
Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 110/181 (60%), Gaps = 9/181 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+I++ F D RG+F+++YS E GL FVQDNHS S + G +RGLHFQ+ AQ
Sbjct: 11 VKIIEMDVFGDHRGFFTESYSKTKFAEHGLDFDFVQDNHSLSTEAGVLRGLHFQKGEAAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KL+R + G + D+ VDIR+ SPTYG W +S +N Q+ +P GFAHGF+TL N
Sbjct: 71 TKLIRVVTGAVLDVIVDIRKGSPTYGQWEGYILSEHNHRQLLVPKGFAHGFVTLTPNVNF 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS---VSEKDQNLPFLNQIDS--PFE 180
+YK ++Y+ D G+A+ D ++ I WP I P SEKDQ P L + ++ PF
Sbjct: 131 MYKCDNYYNAAADGGIAFNDPALAIDWP----IAPEKAITSEKDQKHPTLKEFEAENPFI 186
Query: 181 Y 181
Y
Sbjct: 187 Y 187
>gi|302388126|ref|YP_003823948.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium saccharolyticum
WM1]
gi|302198754|gb|ADL06325.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium saccharolyticum
WM1]
Length = 184
Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 105/167 (62%), Gaps = 2/167 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + +++ F DSRG+F +TY+ +E GL VFVQDN S S G +RGLHFQ+
Sbjct: 10 GIKGLFVIEPAVFHDSRGYFMETYNQNDFQEAGLDMVFVQDNQSMSAK-GVLRGLHFQKQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G++FD+AVD+R +S TYG W +E+SA N Q YIP GFAHGF+ L
Sbjct: 69 -FPQGKLVRVVRGKVFDVAVDLRSSSETYGKWFGVELSAENKKQFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E YK TDFY + G+ W D SI I WP+ + + +S+KDQ
Sbjct: 128 EAEFAYKCTDFYHPGDEGGILWSDPSIGIDWPIEEGMELIISDKDQK 174
>gi|315166501|gb|EFU10518.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX1341]
Length = 190
Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 110/181 (60%), Gaps = 9/181 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+I++ F D RG+F+++YS E GL FVQDNHS S + G +RGLHFQ+ AQ
Sbjct: 11 VKIIEMDVFGDHRGFFTESYSKAKFAEHGLDFDFVQDNHSLSTEAGVLRGLHFQKGEAAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KL+R + G + D+ +DIR+ SPTYG W +S +N Q+ +P GFAHGF+TL N
Sbjct: 71 TKLIRVVTGAVLDVIIDIRKGSPTYGQWEGYILSEHNHRQLLVPKGFAHGFVTLTPNVNF 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS---VSEKDQNLPFLNQIDS--PFE 180
+YK ++Y+ D G+A+ D ++ I WP I P SEKDQ P L + ++ PF
Sbjct: 131 MYKCDNYYNAAADGGIAFNDPALAIDWP----IAPEKAITSEKDQKHPTLKEFEAENPFI 186
Query: 181 Y 181
Y
Sbjct: 187 Y 187
>gi|260170808|ref|ZP_05757220.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D2]
gi|315919142|ref|ZP_07915382.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D2]
gi|313693017|gb|EFS29852.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D2]
Length = 190
Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 110/182 (60%), Gaps = 6/182 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI V I++ R F+D RG+F +++S + E FVQDN S S G +RGLHFQ
Sbjct: 7 NIEGVVIIEPRLFKDDRGYFFESFSQREFDEKVRPIKFVQDNESMS-SYGVMRGLHFQTM 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY+Q+KLVRC+ G + D+AVDIR+ SPTYG V++E++ N Q +IP GFAHGF L
Sbjct: 66 PYSQSKLVRCVKGTVLDVAVDIRKGSPTYGQHVAVELTEENHRQFFIPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPF 179
YK +FY+ +HD G++ D S+ I W P IL SEKD P L +SPF
Sbjct: 126 KAVFQYKCDNFYAPQHDGGISILDDSLGICWRIPTGKAIL---SEKDTKHPLLKDFESPF 182
Query: 180 EY 181
Y
Sbjct: 183 LY 184
>gi|189092408|gb|ACD75808.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli]
gi|288816217|gb|ADC54940.1| RmlC [Escherichia coli]
gi|315285630|gb|EFU45072.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 110-3]
gi|323956203|gb|EGB51954.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli H263]
Length = 185
Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 110/169 (65%), Gaps = 3/169 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+L+ + F D RG+F ++Y+ + K +G FVQDNHS S G +RGLH+Q PYAQA
Sbjct: 13 VLEPKVFSDERGFFMESYNQIEFEKAIGRHVNFVQDNHSKS-SKGVLRGLHYQLAPYAQA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVRC+ G++FD+AVD+R+NSPT+ W + +SA N Q++IP GFAHGF+ E I
Sbjct: 72 KLVRCVVGQVFDVAVDLRKNSPTFKKWFGITLSAENKRQLWIPEGFAHGFLVTSDEAEFI 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK T++Y+ H + + D ++I WP + L S+S+KDQ +++
Sbjct: 132 YKTTNYYAPGHQQAIIYNDPILNIDWPFCSSAL-SLSQKDQEAKLFSEL 179
>gi|300853735|ref|YP_003778719.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium ljungdahlii DSM
13528]
gi|300433850|gb|ADK13617.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium ljungdahlii DSM
13528]
Length = 185
Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 109/174 (62%), Gaps = 6/174 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V +++T F D+RG+F +TY+ K GL VFVQDN S S G +RGLHFQ+
Sbjct: 14 IKGVYVIETGIFGDNRGYFMETYNYNEFKASGLDMVFVQDNQSKS-KKGVLRGLHFQKN- 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+Q KLVR + G++FD+AVD+R S TYG WV + +S N Q YIP GFAHGF+ L
Sbjct: 72 YSQGKLVRVVKGKVFDVAVDLRDGSSTYGKWVGVTLSEENKKQFYIPKGFAHGFLVLSDE 131
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQ 174
E YK T+FY E + G+ W D I+I WPL +D I+ SEKD+ P L +
Sbjct: 132 AEFCYKCTEFYHPEDEGGIIWNDTDINIKWPLEGIDNII--FSEKDKLWPTLKE 183
>gi|117620166|ref|YP_857409.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117561573|gb|ABK38521.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 187
Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 109/162 (67%), Gaps = 4/162 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
+ + + R F D RG+F ++++ KL ++ +G FVQDNHS S G +RGLH+Q PP+A
Sbjct: 11 ILLFEPRVFSDERGFFFESFNHKLFEDAVGYPVTFVQDNHSKS-SKGVLRGLHYQLPPHA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRCI G IFD+AVDIR++SPT+G WV +S N Q++IP GFAHGF+T E
Sbjct: 70 QGKLVRCIIGEIFDVAVDIRKSSPTFGRWVGAHLSDTNKRQLWIPEGFAHGFITRTETAE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
V+YK T++Y + ++ + W D+ + I W + +LP +S KD
Sbjct: 130 VLYKATNYYQPDFENSICWNDQQLSIKWD--NDMLPVLSRKD 169
>gi|300768302|ref|ZP_07078206.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|300494090|gb|EFK29254.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
Length = 193
Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 109/181 (60%), Gaps = 3/181 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V+I++ F D RG+F++TYS + KE G+ F+QDN S S + G +RGLHFQR
Sbjct: 11 LQDVKIIEPAVFGDKRGFFTETYSDRDFKEAGIDFDFIQDNQSLSAEAGVLRGLHFQRGK 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KL+R + G + D+ VD+R SPTYG W IS +N Q+ +P GFAHGF+TL N
Sbjct: 71 AAQTKLIRVVTGAVLDVIVDVRAGSPTYGEWEGYIISESNHRQLLVPRGFAHGFVTLTDN 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID--SPFE 180
+YK ++Y+ E D G+ + DK ++I WP +D SEKD + + +PF
Sbjct: 131 VNFLYKCDNYYNAEADGGITFMDKDLNINWP-IDYDQAITSEKDAKQQTFKEFEQNNPFA 189
Query: 181 Y 181
Y
Sbjct: 190 Y 190
>gi|283798719|ref|ZP_06347872.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium sp. M62/1]
gi|291073581|gb|EFE10945.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium sp. M62/1]
gi|295090733|emb|CBK76840.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium cf.
saccharolyticum K10]
gi|295114995|emb|CBL35842.1| dTDP-4-dehydrorhamnose 3,5-epimerase [butyrate-producing bacterium
SM4/1]
Length = 184
Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + +++ F+D RG+F +TY+ KE GL VFVQDN S S G +RGLH+Q+
Sbjct: 10 DIKGLYVIEPTVFKDERGYFVETYNQNDFKEAGLDMVFVQDNQSMSVK-GVLRGLHYQKQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR I G +FD+AVD+R +S TYG W + +SA N Q YIP GFAHGF+ L
Sbjct: 69 -YPQGKLVRAIRGTVFDVAVDLRADSETYGKWFGVVLSAENKKQFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E YK TDFY + G+AW D I + WP+ + + +SEKDQ
Sbjct: 128 EAEFAYKCTDFYHPGDEGGLAWNDPEIGVEWPIEEGMKLIISEKDQK 174
>gi|306814843|ref|ZP_07449005.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli NC101]
gi|305852237|gb|EFM52689.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli NC101]
gi|323968167|gb|EGB63576.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli M863]
gi|327253165|gb|EGE64819.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli STEC_7v]
Length = 185
Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 110/169 (65%), Gaps = 3/169 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+L+ + F D RG+F ++Y+ + K +G FVQDNHS S G +RGLH+Q PYAQA
Sbjct: 13 VLEPKVFSDERGFFMESYNQIEFEKTIGRHVNFVQDNHSKS-SKGVLRGLHYQLAPYAQA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVRC+ G++FD+AVD+R+NSPT+ W + +SA N Q++IP GFAHGF+ E I
Sbjct: 72 KLVRCVVGQVFDVAVDLRKNSPTFKKWFGITLSAENKRQLWIPEGFAHGFLVTSDEAEFI 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK T++Y+ H + + D ++I WP + L S+S+KDQ +++
Sbjct: 132 YKTTNYYAPGHQQAIIYNDPILNIDWPFCSSAL-SLSQKDQEAKLFSEL 179
>gi|332667357|ref|YP_004450145.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Haliscomenobacter hydrossis
DSM 1100]
gi|332336171|gb|AEE53272.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Haliscomenobacter hydrossis
DSM 1100]
Length = 183
Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 105/159 (66%), Gaps = 3/159 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F D RG F++T+ + +G FVQ NHS + GT+RG+HFQ+ P+++ KL+RCI
Sbjct: 19 FTDERGMFARTFCKQEFAAIGHNKEFVQFNHSQNQRQGTLRGMHFQKAPFSEIKLIRCIR 78
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
GR+FD+ VD+R SPT+ + +E+S +N IY+P GFAHGF TLE +TE+IY T FY
Sbjct: 79 GRVFDVIVDLRAQSPTFLQYYGVELSESNLRMIYVPEGFAHGFQTLEDHTELIYHHTAFY 138
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ + G+ ++D I I WP +I +SEKDQN PF+
Sbjct: 139 TPGQERGIHYKDPRIKIEWPAATSI---ISEKDQNYPFI 174
>gi|255321114|ref|ZP_05362280.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acinetobacter radioresistens
SK82]
gi|255301668|gb|EET80919.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acinetobacter radioresistens
SK82]
Length = 183
Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 79/170 (46%), Positives = 110/170 (64%), Gaps = 6/170 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYS----SKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLH 57
I + IL F D RGWF ++++ ++ L++L L FVQDNHS S +RGLH
Sbjct: 8 IEGLLILHPNVFGDDRGWFMESFNQQRFAQALEQLNLPVPTFVQDNHSLS-QKSVLRGLH 66
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
+Q PYAQ KLVR + GR++D+AVDIR +S TYG WV +E+SA N +IP GFAHGF+
Sbjct: 67 YQNAPYAQGKLVRVVQGRVWDVAVDIRPDSKTYGEWVGVELSAENKTMFWIPEGFAHGFI 126
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
LE NT+ +YK T++Y+ E + + W D ++ I WPL + VS+KDQ
Sbjct: 127 ALEDNTQFLYKTTNYYNKESEGTIIWNDPTLAINWPLDEVGEVLVSDKDQ 176
>gi|323481258|gb|ADX80697.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis 62]
Length = 190
Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 110/181 (60%), Gaps = 9/181 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+I++ F D RG+F+++YS E G+ FVQDNHS S + G +RGLHFQ+ AQ
Sbjct: 11 VKIIEMDVFGDHRGFFTESYSKAKFAEHGIDFDFVQDNHSLSTEAGVLRGLHFQKGEAAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KL+R + G + D+ VDIR+ SPTYG W +S +N Q+ +P GFAHGF+TL N
Sbjct: 71 TKLIRVVTGAVLDVIVDIRKGSPTYGQWEGYILSEHNHRQLLVPKGFAHGFVTLTPNVNF 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS---VSEKDQNLPFLNQIDS--PFE 180
+YK ++Y+ D G+A+ D ++ I WP I P SEKDQ P L + ++ PF
Sbjct: 131 MYKCDNYYNAAADGGIAFNDPTLAIDWP----IAPEKAITSEKDQKHPTLKEFEAENPFI 186
Query: 181 Y 181
Y
Sbjct: 187 Y 187
>gi|226941907|ref|YP_002796981.1| RfbC [Laribacter hongkongensis HLHK9]
gi|226716834|gb|ACO75972.1| RfbC [Laribacter hongkongensis HLHK9]
Length = 182
Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 114/165 (69%), Gaps = 4/165 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+I++ R FED RG+F ++++ + +E +G FVQDNHS S G +RGLH+Q+
Sbjct: 8 IAEVKIIEPRVFEDERGFFFESFNQQRFEEAIGYPVEFVQDNHSRS-SRGVLRGLHYQQA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVRC+AG ++D+AVD+R++SPT+G V +E+SA N Q++IP GFAHGF+TL
Sbjct: 67 PHAQGKLVRCVAGAVWDVAVDLRQSSPTFGQSVGVELSAGNRRQLWIPAGFAHGFLTLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ E +YK TD+Y+ + + W D + I WP + + P +S KD
Sbjct: 127 SAEFLYKTTDYYAPAAEVCLRWNDPVLAIAWP--EAVSPVLSVKD 169
>gi|297620313|ref|YP_003708450.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Waddlia chondrophila WSU
86-1044]
gi|297375614|gb|ADI37444.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Waddlia chondrophila WSU
86-1044]
Length = 175
Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 109/165 (66%), Gaps = 3/165 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V ++ K ED RG+F++T+ S+ +E GL+ FVQ N SFS + GT+RG+H+Q PP+A+
Sbjct: 11 VFLINLEKREDERGFFARTFCSEEFREKGLETAFVQANDSFSIEQGTLRGMHYQLPPFAE 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVRCI G ++D +D+R +SPT+G +SA+N +Y+P GFAHGF+TLE TEV
Sbjct: 71 TKLVRCIKGSLYDAVLDLREDSPTFGQSFGTILSADNRTMMYVPRGFAHGFLTLEPYTEV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
Y V+ YS + + G+ W D +I+WP + +SE+D + P
Sbjct: 131 YYLVSAPYSPKFERGIRWNDPRFNISWPEPPRV---ISERDNSHP 172
>gi|307340809|gb|ADN43869.1| RmlC [Escherichia coli]
Length = 180
Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 111/166 (66%), Gaps = 3/166 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
+I V I + + F D RG+F ++++ K+ +E V FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVLIFEPKVFYDERGFFFESFNQKVFEEAVAHKVEFVQDNHSKS-SKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFITLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP-LLDTILPSVSEK 165
E +YK T FYS +H+ + + D++I I WP + D L S +K
Sbjct: 126 DIAEFLYKTTSFYSPKHEVCIRFNDENIGIHWPNITDNTLISPKDK 171
>gi|253583715|ref|ZP_04860913.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium varium ATCC
27725]
gi|251834287|gb|EES62850.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium varium ATCC
27725]
Length = 189
Score = 157 bits (397), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 86/170 (50%), Positives = 110/170 (64%), Gaps = 6/170 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + IL+ F D RG+F +TY+ K +E+G+ + FVQDNHS S G +RGLHFQ
Sbjct: 11 IEGLYILEPTVFGDERGFFLETYNKKEFEEIGIFEEFVQDNHSKS-KRGVLRGLHFQ-TK 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
++Q KLVR I G ++D+AVDIR+ SPTYG W +E+SA N +IP GFAHGF+TLE
Sbjct: 69 HSQGKLVRVIRGAVYDVAVDIRKGSPTYGKWYGIELSAKNKKMFFIPKGFAHGFLTLEDE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS----VSEKDQN 168
TE YK TD Y E+DSG+ W DK IDI W L +SEKD+N
Sbjct: 129 TEFQYKCTDLYHSEYDSGIMWNDKDIDINWNFEKYGLKEDDVVLSEKDKN 178
>gi|298480819|ref|ZP_06999014.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D22]
gi|298272842|gb|EFI14408.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D22]
Length = 190
Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 109/182 (59%), Gaps = 6/182 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI V I++ R F D RG+F +++S + E FVQDN S S G +RGLHFQ
Sbjct: 7 NIEGVVIIEPRLFMDDRGYFFESFSQREFDEKVHPVKFVQDNESMS-SYGVMRGLHFQTM 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY Q+KLVRC+ G + D+AVDIR+ SPTYG V++E++ N Q +IP GFAHGF L
Sbjct: 66 PYCQSKLVRCVEGAVLDVAVDIRKGSPTYGQHVAVELTEENHRQFFIPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPF 179
YK +FY+ +HD G++ D+S+ I W P IL SEKD P L +SPF
Sbjct: 126 TAVFQYKCDNFYAPQHDGGISILDESLGICWRMPTGKAIL---SEKDTKHPLLKDFESPF 182
Query: 180 EY 181
Y
Sbjct: 183 LY 184
>gi|219849033|ref|YP_002463466.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chloroflexus aggregans DSM
9485]
gi|219543292|gb|ACL25030.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chloroflexus aggregans DSM
9485]
Length = 176
Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 108/168 (64%), Gaps = 3/168 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
I++ ED+RG+F++ ++ E GL D VQ N S++ GT+RG+HFQ PYA+
Sbjct: 11 AHIIELEPREDNRGFFARVWAKDEFAEHGLVDRVVQMNLSYNRLAGTLRGMHFQHAPYAE 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVRCI G I+D+ +D+R +SPTY W+ + ++A N L +Y+P GFAHGF TLE +TEV
Sbjct: 71 TKLVRCIRGAIYDVIIDLRPDSPTYKRWIGVTLTAANRLALYVPEGFAHGFQTLEDDTEV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
Y+V+ +Y+ + GV + D + I WPL T +SEKD+ P N
Sbjct: 131 FYQVSQYYTPSAEGGVRYDDPAFGIEWPLPVT---EMSEKDKRWPLFN 175
>gi|254556200|ref|YP_003062617.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus plantarum JDM1]
gi|254045127|gb|ACT61920.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus plantarum JDM1]
Length = 193
Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 109/181 (60%), Gaps = 3/181 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V+I++ F D RG+F++TYS + KE G+ F+QDN S S + G +RGLHFQR
Sbjct: 11 LQDVKIIEPAVFGDKRGFFTETYSDRDFKEAGIDFDFIQDNQSLSAEAGVLRGLHFQRGK 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KL+R + G + D+ VD+R SPTYG W IS +N Q+ +P GFAHGF+TL N
Sbjct: 71 AAQTKLIRVVTGAVLDVIVDVRAGSPTYGEWEGYIISESNHRQLLVPRGFAHGFVTLTDN 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID--SPFE 180
+YK ++Y+ E D G+ + DK ++I WP +D SEKD + + +PF
Sbjct: 131 VNFLYKCDNYYNAEADGGITFMDKDLNINWP-IDYDQAITSEKDAKQQTFKEFEQNNPFV 189
Query: 181 Y 181
Y
Sbjct: 190 Y 190
>gi|126464817|ref|YP_001041793.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides ATCC
17029]
gi|221634575|ref|YP_002523263.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides
KD131]
gi|126106632|gb|ABN79157.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides ATCC
17029]
gi|221163448|gb|ACM04410.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides
KD131]
Length = 187
Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 107/177 (60%), Gaps = 1/177 (0%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V IL R F D+RG F + ++ L+ LG+ FVQDN S S GT+RGLH+Q PP+AQ
Sbjct: 11 VLILTPRVFGDARGSFCEAWNRATLQGLGIDLDFVQDNQSISAPVGTVRGLHYQAPPHAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR G I D+AVD+R SPTYG WV +E++A N Q+ +P GF HGF+T E +T V
Sbjct: 71 DKLVRVGHGAILDVAVDVRVGSPTYGRWVGVELTAGNARQLLVPKGFLHGFVTREPDTVV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
+YK TD Y+ + D V + D + I W +D +S+KD P SPF +
Sbjct: 131 LYKTTDVYAPDCDGAVHFADPDLGIDWG-IDPASAVLSDKDARAPRFADWTSPFSIE 186
>gi|125654612|ref|YP_001033806.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein [Rhodobacter
sphaeroides 2.4.1]
gi|77386272|gb|ABA81701.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein [Rhodobacter
sphaeroides 2.4.1]
Length = 187
Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 107/177 (60%), Gaps = 1/177 (0%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V IL R F D+RG F + ++ L+ LG+ FVQDN S S GT+RGLH+Q PP+AQ
Sbjct: 11 VLILTPRVFGDARGSFCEAWNRATLQGLGIDLDFVQDNQSISAPVGTVRGLHYQAPPHAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR G I D+AVD+R SPTYG WV +E++A N Q+ +P GF HGF+T E +T V
Sbjct: 71 DKLVRVGHGAILDVAVDVRVGSPTYGRWVGVELTAGNARQLLVPKGFLHGFVTREPDTVV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
+YK TD Y+ + D V + D + I W +D +S+KD P SPF +
Sbjct: 131 LYKTTDVYAPDCDGAVHFADPDLGIDWG-IDPASAVLSDKDARAPRFADWTSPFSIE 186
>gi|171463076|ref|YP_001797189.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171192614|gb|ACB43575.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 186
Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 111/165 (67%), Gaps = 3/165 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSK-LLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V I++ + F D RGWF+++++++ K GL FVQDNHSFS T+RGLH+Q
Sbjct: 12 IHDVFIVEPKVFGDERGWFTESFNAEDFAKATGLDVRFVQDNHSFSRQW-TLRGLHYQME 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR +AG +FD+AVDIR++SPT+G WV +E+SA N Q++IP AHGF+ L
Sbjct: 71 K-TQGKLVRVVAGSVFDVAVDIRKDSPTFGKWVGVELSAENHKQLWIPAQLAHGFLVLSP 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y + ++ +AW D ++ I WPL I P+++ KD
Sbjct: 130 TAEFLYKTTDYYHPQSEACLAWSDPTVGIEWPLPSGIQPNMNAKD 174
>gi|332561399|ref|ZP_08415714.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides WS8N]
gi|332274198|gb|EGJ19515.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides WS8N]
Length = 187
Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V IL R F D+RG F + + L+ LG+ FVQDN S S GT+RGLH+Q PP+AQ
Sbjct: 11 VLILTPRVFGDARGSFCEAWKRATLQGLGIDLDFVQDNQSISAPVGTVRGLHYQAPPHAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR G I D+AVD+R SPTYG WV +E++A N Q+ +P GF HGF+T E +T V
Sbjct: 71 DKLVRVGHGAILDVAVDVRVGSPTYGRWVGVELTAGNARQLLVPKGFLHGFVTREPDTVV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
+YK TD Y+ + D V + D + I W +D +S+KD P SPF +
Sbjct: 131 LYKTTDVYAPDCDGAVHFADPDLGIDWG-IDPASAVLSDKDARAPRFADWTSPFSIE 186
>gi|257867753|ref|ZP_05647406.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus casseliflavus
EC30]
gi|257874080|ref|ZP_05653733.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus casseliflavus
EC10]
gi|257801836|gb|EEV30739.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus casseliflavus
EC30]
gi|257808244|gb|EEV37066.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus casseliflavus
EC10]
Length = 190
Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 113/182 (62%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V++++ + D RG+F+++YS + G+ FVQDNHS S + G +RGLHFQ+
Sbjct: 7 KLTDVKLIEMDVYGDHRGFFTESYSKEKFSAQGIDFDFVQDNHSLSAEAGVLRGLHFQKG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ VDIR+ SPTYG W ++ +N Q+ +P G+AHGFMTL
Sbjct: 67 EAAQTKLIRVVTGAVLDVIVDIRKGSPTYGEWEGYLLTEHNHRQLLVPRGYAHGFMTLTP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN--QIDSPF 179
N +YK ++Y+ E D G+A+ D + ITWP +D +SEKD+ P L +I++ F
Sbjct: 127 NVNFLYKCDNYYNAEADGGIAFDDPDLAITWP-IDVKKAILSEKDKKHPTLKEFEIENTF 185
Query: 180 EY 181
Y
Sbjct: 186 IY 187
>gi|254458121|ref|ZP_05071547.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacterales bacterium
GD 1]
gi|207084957|gb|EDZ62243.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacterales bacterium
GD 1]
Length = 187
Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 112/177 (63%), Gaps = 3/177 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +L + F D RG+F ++YS E G+ F+QDNHS+S D T RGLH+Q P AQ
Sbjct: 11 VLVLTPKIFNDERGFFYESYSKNSFLEHGVNHDFIQDNHSYSRDKYTFRGLHYQMNPKAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
L+R ++G I D AVD+R+NSPTYG + S+ +SA N Q+ IP GFAHGF+TL N +
Sbjct: 71 TTLIRVVSGEIMDFAVDLRKNSPTYGQYTSVLLSAENHKQLLIPKGFAHGFLTLTDNVNI 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFEY 181
+YK+ D Y+ E+D + +D +DI + D I ++++KD+ P L I++ F Y
Sbjct: 131 LYKMDDIYAPEYDRILNVRDHQVDIKLGVDFDKI--TIAKKDEKAPMLENIENNFIY 185
>gi|171057313|ref|YP_001789662.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptothrix cholodnii SP-6]
gi|170774758|gb|ACB32897.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptothrix cholodnii SP-6]
Length = 183
Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 114/170 (67%), Gaps = 3/170 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I++ + F D+RG+F ++++ S+ +G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIADVLIIEPKVFGDARGFFMESWNQSRFDAAVGSPVRFVQDNHSRSAR-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVR G +FD+AVD+RR+SPT G W+ E+SA+N +++IP GFAHGFM L
Sbjct: 66 PPHAQGKLVRVTRGVVFDVAVDLRRSSPTLGRWICTELSADNHRELWIPPGFAHGFMVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
+ + +YK TD+++ + ++ V W D + I WP LDT P +S KDQ P
Sbjct: 126 DSADFLYKTTDYHAPDCEAAVRWDDPELAIAWPALDTP-PLLSAKDQQAP 174
>gi|317968490|ref|ZP_07969880.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. CB0205]
Length = 196
Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 109/168 (64%), Gaps = 8/168 (4%)
Query: 8 ILKTRKFEDSRGWFSQTYSSK----LLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPP 62
++ R F DSRG+F ++++ + +L+ G FVQDNHS S G +RGLHFQ+ P
Sbjct: 19 LITPRVFGDSRGFFYESWNQRSFNAVLEADGQSSADFVQDNHSRSTQ-GVLRGLHFQKDP 77
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVRCI G IFD+AVD R++SPT+G W+S +S++N Q+++P GFAHGF+TL
Sbjct: 78 HGQGKLVRCIQGEIFDVAVDCRQSSPTFGQWISARLSSDNQQQLWVPVGFAHGFLTLSAQ 137
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
EV+YK TDF+ E + + W D + I WP + P ++EKD P
Sbjct: 138 AEVLYKTTDFWDRESERSLLWSDPDLAIAWP--QSTAPLLAEKDAAAP 183
>gi|325281645|ref|YP_004254187.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Odoribacter splanchnicus DSM
20712]
gi|324313454|gb|ADY34007.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Odoribacter splanchnicus DSM
20712]
Length = 190
Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 113/182 (62%), Gaps = 8/182 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDC-GTIRGLHFQRP 61
I V I++ R F D RG+F +++S + + + VFVQDN S S C G +RGLHFQ+P
Sbjct: 8 IPGVVIVQPRIFGDERGYFFESFSQRDFERQVCKTVFVQDNESKS--CYGVVRGLHFQQP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ+KLVR + GR+ D+AVDIR+ SPT+G VS+E++ N Q ++P GFAHGF L
Sbjct: 66 PYAQSKLVRVVKGRVLDVAVDIRKGSPTFGKHVSVELTEENKRQFFVPRGFAHGFAVLSA 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPF 179
YK +FY+ E + +AW D + I W P IL SEKD+ P L ++D F
Sbjct: 126 EAVFQYKCDNFYAPESEGALAWDDPDLGIDWRIPAAKMIL---SEKDKRHPRLKEVDWLF 182
Query: 180 EY 181
+Y
Sbjct: 183 DY 184
>gi|326391871|ref|ZP_08213383.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoanaerobacter
ethanolicus JW 200]
gi|325992089|gb|EGD50569.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoanaerobacter
ethanolicus JW 200]
Length = 183
Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 108/174 (62%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++T FED+RG+F ++Y+ + K G+ VFVQDN S S G +RGLHFQ+
Sbjct: 10 EIEGLYIIETGIFEDNRGYFMESYNYRDFKAAGIDAVFVQDNQSKS-KKGVLRGLHFQKK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R++S TYG WV + +S N Q YIP GFAHGF+ L
Sbjct: 69 -HPQGKLVRVLKGEVFDVAVDLRKDSKTYGKWVGVILSDKNKRQFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YK TDFY + + G+ W D I+I WPL +SEKD+ P L +
Sbjct: 128 EAEFFYKCTDFYYPDDEGGIIWNDPDINIQWPLDGIEEIILSEKDKKWPRLRDL 181
>gi|325300031|ref|YP_004259948.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides salanitronis DSM
18170]
gi|324319584|gb|ADY37475.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides salanitronis DSM
18170]
Length = 183
Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 107/181 (59%), Gaps = 6/181 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ R F D RG+F +++S + E FVQDN S S G +RGLHFQRP
Sbjct: 7 GIEGVVIIEPRLFRDERGYFFESFSQREFDEKVGHVTFVQDNESMS-SYGVMRGLHFQRP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ QAKLVRC+ G + D+AVDIR+ SPTYG V++E++ +N Q +IP GFAHGF L
Sbjct: 66 PFTQAKLVRCVKGAVLDVAVDIRKGSPTYGKHVAVELTEDNHRQFFIPKGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPF 179
YK +FY E + G++ DK + I W P IL S KD P L ++PF
Sbjct: 126 TAVFQYKCDEFYHPEAEGGISILDKELGIDWRIPADGAIL---SGKDTAHPLLKDFETPF 182
Query: 180 E 180
E
Sbjct: 183 E 183
>gi|332525494|ref|ZP_08401652.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Rubrivivax
benzoatilyticus JA2]
gi|332108761|gb|EGJ09985.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Rubrivivax
benzoatilyticus JA2]
Length = 191
Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 108/175 (61%), Gaps = 8/175 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSS----KLLKELGLQDV--FVQDNHSFSFDCGTIRGLHFQ 59
V I++ + D RGWF +T++ + L ELG FVQDNHS S G +RGLH+Q
Sbjct: 11 VLIVEPAVYGDERGWFMETFNEPRWRRALDELGEPQPRPFVQDNHSCSH-AGVLRGLHYQ 69
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
PP+AQ KLVR + GR FD+AVDIRR S +G W +E+ A N QI+IP GFAHGF+ L
Sbjct: 70 LPPHAQGKLVRVVKGRAFDVAVDIRRGSAHFGQWFGVELDAVNRRQIWIPEGFAHGFLAL 129
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP-LLDTILPSVSEKDQNLPFLN 173
E +T+V+YK TD Y+ + G+ W D + I WP L + P +SE+D L
Sbjct: 130 EDDTQVLYKTTDVYAAPCEGGIRWDDPDLAIRWPSLPNGAPPRLSERDARAAALK 184
>gi|323697532|ref|ZP_08109444.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio sp. ND132]
gi|323457464|gb|EGB13329.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio desulfuricans
ND132]
Length = 189
Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 111/177 (62%), Gaps = 1/177 (0%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+L + F+D RG+F ++Y++ +ELG+ F+QDNH++S D G +RG HFQRPP AQAK
Sbjct: 13 VLVPQVFQDERGFFLESYNANHFRELGITCTFIQDNHAYSRDVGVLRGFHFQRPPQAQAK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV G + D+ VD+R SPTYG W + +SA N +++IP GF H ++T+ +TE Y
Sbjct: 73 LVWVTRGAVLDVVVDLRIGSPTYGRWQHVILSAANFKRMFIPRGFGHAYVTIMPDTEFQY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITW-PLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
KV Y+ + G+AW D I + W L P +SEKD+ L L +SPF ++G
Sbjct: 133 KVDAPYAPALEGGLAWDDPDIGMDWDAALHGQEPILSEKDRRLSGLAGFESPFTFEG 189
>gi|56752004|ref|YP_172705.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus elongatus PCC
6301]
gi|81300907|ref|YP_401115.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus elongatus PCC
7942]
gi|56686963|dbj|BAD80185.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus elongatus PCC
6301]
gi|81169788|gb|ABB58128.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus elongatus PCC
7942]
Length = 183
Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 108/162 (66%), Gaps = 3/162 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ + F D RG+F ++++++ EL GL FVQDNHS S G +RGLH+Q A
Sbjct: 11 VCILEPKVFGDDRGFFLESFNARTFAELTGLNVTFVQDNHSRS-QQGVLRGLHYQ-IQQA 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRC+ G IFD+AVD+R++SP +G WV +SA+N Q+++P GFAHGF+ L + E
Sbjct: 69 QGKLVRCVVGEIFDVAVDLRQSSPQFGQWVGERLSADNHRQLWVPPGFAHGFLVLSESAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
V+YK TD+Y+ H+ + W D +I I WPL P +S KD
Sbjct: 129 VLYKTTDYYAPTHERSLRWDDPAIAIDWPLAAGQQPQLSAKD 170
>gi|84489349|ref|YP_447581.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanosphaera stadtmanae DSM
3091]
gi|84372668|gb|ABC56938.1| predicted dTDP-4-dehydrorhamnose 3,5-epimerase [Methanosphaera
stadtmanae DSM 3091]
Length = 185
Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 108/178 (60%), Gaps = 2/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I+ V I++ F D+RG+F +TY ++ G+ FVQDN S S G +RGLHFQR
Sbjct: 10 SIDGVYIIEPTVFGDNRGYFMETYQKEVFSRAGISSEFVQDNQSKS-KKGVLRGLHFQRT 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR I G +FD+AVD+R NS TYG WV + +S+ N Q YIP GFAHGF+ L
Sbjct: 69 Q-PQGKLVRVIKGEVFDVAVDLRSNSSTYGKWVGVILSSENKKQFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
E YK TD+Y + + G+ W D++I I WPL D +S+KD+ L + + F
Sbjct: 128 EAEFTYKCTDYYKADDEDGIKWDDETIGIKWPLDDVDEIILSDKDKLWKSLEETNVDF 185
>gi|37523271|ref|NP_926648.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gloeobacter violaceus PCC
7421]
gi|35214275|dbj|BAC91643.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gloeobacter violaceus PCC
7421]
Length = 186
Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 106/171 (61%), Gaps = 5/171 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +++ + F D+RG+F ++Y ELG+ D FVQDN S S G +RGLH+Q + Q
Sbjct: 11 VYVIEPKVFGDARGYFYESYHRAKFAELGIPDEFVQDNCSRSAR-GVLRGLHYQLR-FPQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKL R + G +FD+AVDIR+ SPT+G W + +SA N QIY+P GFAHGF L + E
Sbjct: 69 AKLCRVVEGEVFDVAVDIRKGSPTFGQWAGVVLSAENRHQIYVPAGFAHGFAVLSESAEF 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK +DFY E + GV W D I I WP+ +L S KDQ LNQ D
Sbjct: 129 LYKCSDFYHPEDEQGVLWNDPDIGIPWPVEAPVL---SGKDQKYLPLNQTD 176
>gi|332705308|ref|ZP_08425386.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lyngbya majuscula 3L]
gi|332355668|gb|EGJ35130.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lyngbya majuscula 3L]
Length = 181
Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 113/168 (67%), Gaps = 7/168 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ- 59
I V IL+ R F D RG+F ++Y+ ++L + G+ FVQDN+S S G +RGLH+Q
Sbjct: 7 KIPEVLILEPRVFGDDRGFFFESYNKRVLADKAGITAEFVQDNYSRSAQ-GVLRGLHYQI 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P Q KLVR + G IFD+AVDIR++SPT+G WVS +SA N QI+IP GFAHGF+ +
Sbjct: 66 QQP--QGKLVRVLLGTIFDVAVDIRKSSPTFGQWVSCLLSAENKQQIWIPAGFAHGFLVV 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
EV+YK TDFY+ +H+ + W D + I WPL D+ PS+S KDQ
Sbjct: 124 SEFAEVLYKTTDFYAPDHERTIVWNDPDLAIHWPLTDS--PSLSAKDQ 169
>gi|150020961|ref|YP_001306315.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermosipho melanesiensis
BI429]
gi|149793482|gb|ABR30930.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermosipho melanesiensis
BI429]
Length = 190
Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 110/174 (63%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I+K + DSRG+F ++++ K E+GL FVQDNHS S G +RGLHFQ
Sbjct: 11 IEGLYIIKPTVYGDSRGFFMESWNRKEFAEIGLDMDFVQDNHSKS-KKGVLRGLHFQEK- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q KLVR + G ++D+AVD+R++SPT+G + + +S N L YIP GFAHGF+ L
Sbjct: 69 YPQGKLVRVVKGVVYDVAVDLRKDSPTFGKYYGVILSEENKLMFYIPEGFAHGFLVLSDE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL--PSVSEKDQNLPFLNQ 174
+YK T++Y E+DSG+ W D I I WP + + P +SEKD+ LP L +
Sbjct: 129 VHFLYKATEYYYPEYDSGIIWNDPDIAIKWPFEEYRIEYPILSEKDKKLPTLRE 182
>gi|330446536|ref|ZP_08310188.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328490727|dbj|GAA04685.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 180
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 110/174 (63%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V I++ + D RG++S+ YS + L + G+ VQDNH S GT+R +HFQ P
Sbjct: 8 LDGVLIIEPKIHRDDRGYYSEIYSERSLSDKGISFRAVQDNHIKS-KKGTLRAIHFQNNP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQAKLVRC G++ D VD+R++SPT+ W+ +E++ N LQ+ IP+GF HG + LE +
Sbjct: 67 KAQAKLVRCTKGKVHDFIVDLRKDSPTFKKWIMVELNTENNLQVLIPSGFGHGVLALEDD 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
TEV+YKV + Y EHD + W D ++I W + P +SEKD+ P+L D
Sbjct: 127 TEVMYKVDELYYPEHDRAIFWADPELNIEWGIES---PLLSEKDKTAPYLKDSD 177
>gi|93115449|gb|ABE98411.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli]
gi|203285011|gb|ACH97130.1| RmlC [Escherichia coli]
gi|203285023|gb|ACH97141.1| RmlC [Escherichia coli]
Length = 180
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 109/168 (64%), Gaps = 4/168 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I + + F D RG+F ++++ + +E+ G + FVQDNHS S G +RGLH+Q PP+A
Sbjct: 11 VLIFEPKVFGDERGFFMESFNQRQFEEIVGRKISFVQDNHSKS-KKGVLRGLHYQLPPFA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRCI G ++D+AVD+R S YG WV + +SA N Q++IP GFAHGF+ + E
Sbjct: 70 QGKLVRCINGEVYDVAVDLRPESINYGKWVGIILSAENKKQLWIPEGFAHGFLVISEFAE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
YK T++YS E + G+ W D +I+I WP + L +S KD PF+
Sbjct: 130 FAYKTTNYYSKESERGIRWNDPTINIQWPKMGQYL--LSPKDALAPFI 175
>gi|326798979|ref|YP_004316798.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingobacterium sp. 21]
gi|326549743|gb|ADZ78128.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingobacterium sp. 21]
Length = 182
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 112/177 (63%), Gaps = 2/177 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ + +ED+RG F +TY+ L +E G+ + FVQDN S S G +RGLH Q P
Sbjct: 8 IEGVVIIEPKIWEDNRGQFFETYNEALFRENGIDEKFVQDNQSVSCK-GALRGLHAQAGP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVR I G + D+AVDIR+NSPT+G +E+S N ++IP GF HGF+ LE N
Sbjct: 67 HAQGKLVRVIKGSVIDVAVDIRKNSPTFGQTFHIELSEANAKMLWIPVGFLHGFVALEEN 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
T YKVT Y ++ GV + D + +I WPL L +S+KD LP L I++PF
Sbjct: 127 TIFCYKVTGKYDKANEIGVRYNDPTFNIQWPLPQEEL-ILSDKDLQLPLLADINNPF 182
>gi|297205907|ref|ZP_06923302.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus jensenii
JV-V16]
gi|297149033|gb|EFH29331.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus jensenii
JV-V16]
Length = 193
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 111/183 (60%), Gaps = 5/183 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N+ V+I+ F D RG+F++TYS + K G+ F+QDN S S G +RGLHFQR
Sbjct: 10 NLQDVKIITPAVFGDHRGFFTETYSDRDFKAAGINFNFIQDNQSLSTQAGVLRGLHFQRG 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R G + D+ VD+R+ SPTY W +S +N Q+ +P GFAHGF+TL
Sbjct: 70 KAAQTKLIRVATGAVLDVIVDLRKGSPTYKQWEGYILSESNHRQLLVPRGFAHGFVTLTD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQI--DSP 178
N +YK ++Y+ E D G++++ ++I WP+ LD + SEKD N P L + D+P
Sbjct: 130 NVNFLYKCDNYYNAEADGGISFKTPELNIDWPIDLDKAI--TSEKDANQPTLTEFEKDNP 187
Query: 179 FEY 181
F Y
Sbjct: 188 FVY 190
>gi|163846788|ref|YP_001634832.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chloroflexus aurantiacus
J-10-fl]
gi|222524606|ref|YP_002569077.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chloroflexus sp. Y-400-fl]
gi|163668077|gb|ABY34443.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chloroflexus aurantiacus
J-10-fl]
gi|222448485|gb|ACM52751.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chloroflexus sp. Y-400-fl]
Length = 176
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 109/172 (63%), Gaps = 3/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ I++ ED+RG+F++ ++ E GL D VQ N S++ GT+RG+HFQ
Sbjct: 7 ELKDAHIIELEPREDNRGFFARVWAKDEFAEHGLVDRVVQMNLSYNRVAGTLRGMHFQHA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYA+ KLVRCI G I+D+ +D+R +SPTY W+ ++++A N L +Y+P GFAHGF TLE
Sbjct: 67 PYAETKLVRCIRGAIYDVIIDLRPDSPTYKRWIGVKLTAANRLALYVPEGFAHGFQTLED 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+TEV Y+V+ +Y+ + GV + D + I WPL T +SEKD+ P
Sbjct: 127 DTEVFYQVSQYYTPSAEGGVRYDDPAFGIEWPLPVT---EMSEKDKRWPLFT 175
>gi|330961714|gb|EGH61974.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 181
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 114/170 (67%), Gaps = 7/170 (4%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + + F D RG+F ++++ K +E+ G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVIVFEPKTFGDDRGFFFESFNQKAFEEVVGRSVKFVQDNHSRSVK-GVLRGLHYQ 64
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
+ P Q KLVR AG +FD+AVD+R++SPT+G WV L ++A N Q++IP GFAHGF+
Sbjct: 65 IQQP--QGKLVRVTAGEVFDVAVDLRKSSPTFGKWVGLHLTAENKKQLWIPEGFAHGFVV 122
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
L + E +YK TD+++ EH+ +AW D +++I WPL D PS+S KDQ
Sbjct: 123 LSESAEFLYKTTDYWAPEHERSLAWNDPTVNIEWPLSDA--PSLSVKDQK 170
>gi|9957832|gb|AAG09512.1|AF279618_4 dTDP-6-deoxy-D-glucose-3,5-epimerase [Salmonella enterica]
Length = 182
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 112/166 (67%), Gaps = 2/166 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ F D RG+F ++++ ++ + L ++ FVQDNHS S +RGLH+Q
Sbjct: 8 IPDVFILEPLVFVDERGFFMESFNHRVFETLLDIKVNFVQDNHSKSTK-NVVRGLHYQTE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVRCI+G ++D+AVD+R S TYGCWV +E+SA N Q++IP GFAHGF+TL
Sbjct: 67 PYAQGKLVRCISGAVYDVAVDLRSTSQTYGCWVGVELSALNMRQLWIPEGFAHGFLTLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
N E +YK T++Y+ E + + + D +DI WP+ + VS+KD+
Sbjct: 127 NVEFLYKTTNYYNKESERCIRYNDPDLDIIWPISNKDNIIVSDKDK 172
>gi|167038025|ref|YP_001665603.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116438|ref|YP_004186597.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166856859|gb|ABY95267.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929529|gb|ADV80214.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 183
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 107/173 (61%), Gaps = 2/173 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++T FED+RG+F ++Y+ K GL VFVQDN S S G +RGLHFQ+
Sbjct: 11 IEGLYIIETGIFEDNRGYFMESYNYNDFKVAGLDMVFVQDNQSKS-KRGVLRGLHFQKK- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR + G +FD+AVD+R+NS TYG WV + +S N Q YIP GFAHGF+ L
Sbjct: 69 HPQGKLVRVLKGEVFDVAVDLRKNSKTYGKWVGVILSEENKKQFYIPEGFAHGFLVLSEE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YK T+FY + + G+ W D I+I WPL +SEKD+ P L +
Sbjct: 129 AEFFYKCTNFYYPDDEGGIIWNDPDINIQWPLDGIEEIILSEKDKKWPRLKDL 181
>gi|225386850|ref|ZP_03756614.1| hypothetical protein CLOSTASPAR_00598 [Clostridium asparagiforme
DSM 15981]
gi|225047047|gb|EEG57293.1| hypothetical protein CLOSTASPAR_00598 [Clostridium asparagiforme
DSM 15981]
Length = 185
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + +++ F+D RG+F +TY+ +E GL VFVQDN S S G +RGLHFQ+
Sbjct: 12 IEGLYVIEPTVFKDERGYFVETYNQNDFREAGLNMVFVQDNQSMSVK-GVLRGLHFQKQ- 69
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q KLVR I G +FD+AVD+R +S TYG W + +SA N Q YIP GFAHGF+ L
Sbjct: 70 YPQGKLVRAIRGTVFDVAVDLRSDSGTYGKWFGVTLSAENKKQFYIPEGFAHGFLVLSDE 129
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E YK TDFY + G+ W D I + WP+ + + +SEKDQ
Sbjct: 130 AEFAYKCTDFYHPGDEGGLLWSDPEIGVEWPIEEGMELIISEKDQK 175
>gi|226943712|ref|YP_002798785.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Azotobacter vinelandii DJ]
gi|226718639|gb|ACO77810.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Azotobacter vinelandii DJ]
Length = 182
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 114/173 (65%), Gaps = 4/173 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I+ + + + + F D RG+F ++Y+ + ++ +G FVQDNHS S G +RGLH+Q
Sbjct: 6 LDISGLVLFEPKVFGDDRGFFFESYNQRHFEDAVGRAVNFVQDNHSRSAQ-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
PP+AQ KLVR + G +FD+AVDIR++SPT+G WV + +SA N Q +IP GFAHGF+TL
Sbjct: 65 LPPHAQGKLVRVVQGEVFDVAVDIRKSSPTFGQWVGVLLSAENKRQFWIPEGFAHGFVTL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
E +YK TD+Y+ + + + W D ++ I W ++ P +S KDQ P L
Sbjct: 125 SETAEFLYKTTDYYAPDSERSILWNDPALAIDWRGIEA--PLLSGKDQKAPLL 175
>gi|315299445|gb|EFU58696.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 16-3]
Length = 182
Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 109/164 (66%), Gaps = 3/164 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S +RG+H+Q
Sbjct: 11 VLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKS-KINVLRGMHYQTQN-T 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR I+G ++D+AVD+R S T+G WV +E+S NN Q++IP GFAHGF LE NTE
Sbjct: 69 QGKLVRVISGSVYDVAVDLREKSKTFGKWVGVELSGNNKRQLWIPEGFAHGFYVLEENTE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+YK TD Y+ H+ + W D +I+I+WP++ P +SEKD N
Sbjct: 129 FVYKCTDTYNPAHEHTLLWNDPTINISWPIIQNCKPIISEKDAN 172
>gi|325836661|ref|ZP_08166204.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Turicibacter sp. HGF1]
gi|325491186|gb|EGC93474.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Turicibacter sp. HGF1]
Length = 193
Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/179 (46%), Positives = 110/179 (61%), Gaps = 7/179 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ + F D RG+F ++YS K E GL FVQDN S S G +RGLHFQ Q K
Sbjct: 16 IIEPKVFGDERGYFMESYSQKDFTEAGLTMTFVQDNESKS-RKGVLRGLHFQTKQ-TQGK 73
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR G ++D+AVD+R+ SPTYG W + +SA N Q Y+P GFAHGF+ Y
Sbjct: 74 LVRVTQGEVWDVAVDLRKGSPTYGQWEGVYLSAENKRQFYVPEGFAHGFVVTSEEAIFNY 133
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQI-DSPFEYDG 183
K TDFY+ E+DSG+ W D+ + + WPL L IL +SEKDQ L ++ D PF Y+G
Sbjct: 134 KCTDFYAPEYDSGLLWNDEDVAVKWPLEGLGEIL--LSEKDQKQKTLKELKDLPFIYEG 190
>gi|29726031|gb|AAO88956.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]
Length = 175
Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 111/166 (66%), Gaps = 4/166 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ + F D RG+F ++++ + + +G FVQDNHS S G +RGLH+Q
Sbjct: 7 KIPDVKIIEPKVFGDERGFFFESFNQQQFEAAVGYPVHFVQDNHSKSTK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQAKLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 66 APHAQAKLVRCVVGEVFDVAVDIRKSSPTFGQWVGVHLSAENKRQLWIPEGFAHGFVTLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK T++YS + + + W D + I WP+ + + S+KD
Sbjct: 126 ETAEFLYKTTNYYSPQCEGAIRWDDSKVGIEWPVEGVV--NQSQKD 169
>gi|160935035|ref|ZP_02082421.1| hypothetical protein CLOLEP_03911 [Clostridium leptum DSM 753]
gi|156866488|gb|EDO59860.1| hypothetical protein CLOLEP_03911 [Clostridium leptum DSM 753]
Length = 189
Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 109/182 (59%), Gaps = 2/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + +++ + F D+RG+F +TY+ K GL VFVQDN S S G +RGLHFQ+
Sbjct: 10 GIEGLVVVEPKVFGDNRGYFMETYNYNDFKAAGLDMVFVQDNQSKS-KKGVLRGLHFQKK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR ++G ++D+AVD+RR S TYG W + +SA N Q Y+P GFAHGF+ +
Sbjct: 69 N-PQGKLVRVVSGEVYDVAVDLRRGSDTYGKWYGVLLSAENKKQFYVPEGFAHGFVVMSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
E +YK T FY + G+ W D I I WP+ + +SEKDQ+ L +SPF
Sbjct: 128 TAEFVYKCTRFYDPSDEGGLMWNDPEIGIDWPVPENAELLLSEKDQHHQPLKDFESPFTM 187
Query: 182 DG 183
+G
Sbjct: 188 EG 189
>gi|188991707|ref|YP_001903717.1| NDP-hexulose epimerase [Xanthomonas campestris pv. campestris str.
B100]
gi|167733467|emb|CAP51668.1| NDP-hexulose epimerase [Xanthomonas campestris pv. campestris]
Length = 193
Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 107/167 (64%), Gaps = 3/167 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ D+RGWF++ + ++ + + GL D FVQ N+SF+ + GT+RG+H+Q PP + K
Sbjct: 13 IIEPEPRGDARGWFARVFCTQEMAQAGLVDQFVQVNNSFNAEAGTLRGMHYQLPPAPEVK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
+VRCI G ++D VD+R +SPTY W +E+SA+N L +Y+P GFAHGF+TL+ TE +Y
Sbjct: 73 IVRCIRGALWDAIVDLRPDSPTYLQWYGVELSADNRLALYVPRGFAHGFITLQAQTEALY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ Y+ + G+ W D I I WP +L S+KD P N+
Sbjct: 133 FASAMYTPAAERGLRWDDARIGIRWPCTPALL---SDKDAAWPEFNE 176
>gi|300853758|ref|YP_003778742.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium ljungdahlii DSM
13528]
gi|300433873|gb|ADK13640.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium ljungdahlii DSM
13528]
Length = 191
Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 110/174 (63%), Gaps = 6/174 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++T F D+RG+F +TY+ K +GL VFVQDN S S G +RGLHFQ+
Sbjct: 14 IEGVYIIETGIFGDNRGYFMETYNYSDFKAVGLDMVFVQDNQSKS-KKGVLRGLHFQKN- 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+Q KLVR + G++FD+AVD+R S TYG W+ + +S N Q YIP GFAHGF+ +
Sbjct: 72 YSQGKLVRVVKGKVFDVAVDLRDGSSTYGKWIGVTLSEENRKQFYIPKGFAHGFLVISDE 131
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQ 174
E YK T+FY E + G+ W D I+I WPL +D I+ SE+D+ P L +
Sbjct: 132 AEFCYKCTEFYHPEDEGGIIWNDPDINIKWPLEGIDNII--FSERDKLWPTLKE 183
>gi|226323946|ref|ZP_03799464.1| hypothetical protein COPCOM_01723 [Coprococcus comes ATCC 27758]
gi|225207495|gb|EEG89849.1| hypothetical protein COPCOM_01723 [Coprococcus comes ATCC 27758]
Length = 190
Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/159 (49%), Positives = 101/159 (63%), Gaps = 3/159 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F +TY+ K ++E GL FVQDN S S +RGLHFQ+ Y Q KLVR I G
Sbjct: 35 DQRGYFMETYNQKDMEEAGLTMKFVQDNQSGSGKA-VLRGLHFQKK-YPQGKLVRVIRGT 92
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVDIR+ S TYG W +E+S N Q YIP GFAHGF+ L E YK TDFY
Sbjct: 93 VFDVAVDIRKGSATYGKWYGIELSEENKKQFYIPEGFAHGFLVLSDQAEFCYKCTDFYHP 152
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ + G+AW D +I++ WP LD + +SEKD+ L +
Sbjct: 153 DDEGGIAWNDPTINVAWPELD-VPYRMSEKDKKWGRLGE 190
>gi|169836770|ref|ZP_02869958.1| dTDP-4-dehydrorhamnose 3,5-epimerase [candidate division TM7
single-cell isolate TM7a]
Length = 168
Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ + F D RG+F +TY+ K +ELGL FVQDNHS S G +RGLHFQ
Sbjct: 11 IKDLVIIEPKVFGDERGFFMETYNQKSFEELGLTMNFVQDNHSKS-KKGVLRGLHFQ-TK 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLV I G ++D+AVD+R+ S T+G W ++++S+ N L YIP GFAHGF+TLE
Sbjct: 69 HTQGKLVCVIKGSVYDVAVDLRKGSKTFGKWYAVKLSSENKLMFYIPEGFAHGFLTLEDE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
TE YK TD Y+ E+DSG+ W D++I+I W
Sbjct: 129 TEFTYKCTDLYAPEYDSGILWNDETINIDWKF 160
>gi|125973881|ref|YP_001037791.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum ATCC
27405]
gi|125714106|gb|ABN52598.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum ATCC
27405]
gi|316939921|gb|ADU73955.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum DSM
1313]
Length = 183
Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 112/168 (66%), Gaps = 3/168 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + +++ + F D+RG+F ++Y+ K E GL FVQDNH S G +RG+HFQR
Sbjct: 11 IEGLVVVEPKVFTDTRGFFFESYNKKAFCEFGLTMEFVQDNHIKS-RIGVLRGIHFQRK- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q +LVR I G+++D+AVD+R+NSPT+G W +E+SA N YIP F H F+TLE +
Sbjct: 69 FPQGRLVRVIKGKVYDVAVDLRKNSPTFGKWYGIELSAENKKMFYIPENFGHAFLTLEDD 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
TEV+ K T+ Y E +SG+ + D ++I WP ++ + +SEKD+NLP
Sbjct: 129 TEVLCKTTNVYRPEFESGIIYNDPELNIDWPQIEGDI-VLSEKDKNLP 175
>gi|254458145|ref|ZP_05071571.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacterales bacterium
GD 1]
gi|207084981|gb|EDZ62267.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacterales bacterium
GD 1]
Length = 191
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 112/167 (67%), Gaps = 3/167 (1%)
Query: 16 DSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RG+F +T+ L+E LG + F QDN S S G +RGLH+Q PPY+Q KL+R I G
Sbjct: 21 DTRGYFVETFRQDKLEEFLGFKINFCQDNESKS-SKGVLRGLHYQLPPYSQTKLLRVIQG 79
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
R+ DIAVDIR++SPT+G VS+E++A N Q+ IP GFAHGF+ LE +T YKV ++YS
Sbjct: 80 RVLDIAVDIRKDSPTFGEHVSIELTAENKKQLLIPHGFAHGFVVLEDDTIFAYKVDNYYS 139
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
E+D G+A+ D + I W +D L ++S+KD P L + FEY
Sbjct: 140 PENDRGIAFDDPDLGIDWQ-VDFSLLNLSQKDTKQPRLKATNDLFEY 185
>gi|74317796|ref|YP_315536.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thiobacillus denitrificans
ATCC 25259]
gi|74057291|gb|AAZ97731.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thiobacillus denitrificans
ATCC 25259]
Length = 180
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 110/172 (63%), Gaps = 6/172 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ-RPPYA 64
V +L+ + F D+RG+F ++++ K LGL FVQDNHS S G +RGLH+Q + P
Sbjct: 11 VLLLEPKVFGDARGFFLESWNRKTFSALGLDVDFVQDNHSRS-ARGVLRGLHYQIKDP-- 67
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVD+RR SP +G WV E+SA N ++IP GFAHGF+ L + +
Sbjct: 68 QGKLVRVVNGSVFDVAVDLRRASPNFGRWVGYELSAENQRMLWIPPGFAHGFLVLSESAD 127
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK T +Y+ E D GV W D I I WP + P++S KDQ LPFL +
Sbjct: 128 FLYKTTAYYAPEWDRGVCWNDPEIGIEWPWSGS--PTLSAKDQVLPFLKDAE 177
>gi|269121010|ref|YP_003309187.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sebaldella termitidis ATCC
33386]
gi|268614888|gb|ACZ09256.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sebaldella termitidis ATCC
33386]
Length = 189
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 112/171 (65%), Gaps = 6/171 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ FED RG+F ++Y+ ++LGL+ F+QDNHS S G +RGLH+Q
Sbjct: 11 IADLVIIEPLVFEDERGFFLESYNKNHFEKLGLKMEFIQDNHSKS-KKGVLRGLHYQ-SK 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
++Q KLVR G ++D+AVD+R SPT+G W LE++ N Y+P GFAHGF+TLE
Sbjct: 69 HSQGKLVRVTKGAVWDVAVDLRTESPTFGKWYGLELNEKNKKMFYVPEGFAHGFLTLEDE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD-TILPS---VSEKDQNL 169
TE YK TDFY E+DSG+ W D + I WP+ D IL + +S+KD+NL
Sbjct: 129 TEFQYKCTDFYYPEYDSGIFWNDDILKIEWPISDYGILINELVISDKDKNL 179
>gi|311278965|ref|YP_003941196.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterobacter cloacae SCF1]
gi|308748160|gb|ADO47912.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterobacter cloacae SCF1]
Length = 184
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 79/169 (46%), Positives = 108/169 (63%), Gaps = 5/169 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL---GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ V+I++ F D RG+F +T++ K +EL G+ FVQDNHS S G +RGLHFQ
Sbjct: 8 LEEVKIIEPTVFGDDRGFFMETWNQKKFEELVTNGVSTKFVQDNHSKS-KKGILRGLHFQ 66
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR G +FD+AVD+R+NSPT G WV +E+SA N Q+++P GFAHGF L
Sbjct: 67 SE-NTQGKLVRVGVGAVFDVAVDVRKNSPTLGKWVGVELSAENKRQLWVPEGFAHGFYVL 125
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E IYK TDFY+ + + + W D +I + WPL +T+ +SEKD N
Sbjct: 126 SDTAEFIYKCTDFYNPKAEHSIIWNDPAIGVDWPLDETVPLILSEKDMN 174
>gi|257468057|ref|ZP_05632153.1| dTDP-4-dehydrorhamnose reductase [Fusobacterium ulcerans ATCC
49185]
gi|317062343|ref|ZP_07926828.1| dTDP-4-dehydrorhamnose reductase [Fusobacterium ulcerans ATCC
49185]
gi|313688019|gb|EFS24854.1| dTDP-4-dehydrorhamnose reductase [Fusobacterium ulcerans ATCC
49185]
Length = 475
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 110/171 (64%), Gaps = 6/171 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+N+ + I++ FEDSRG+F ++Y+ +++G+ F+QDNHS S GT+RGLHFQ
Sbjct: 9 INLQGIYIIEPLVFEDSRGFFLESYNKAEFEKIGITTNFIQDNHSKS-KKGTLRGLHFQ- 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
++QAKL+R I G+I DI VDIR+ S TYG W E+SA N +YI GFAHGF+ LE
Sbjct: 67 IKHSQAKLIRVIKGKILDIVVDIRKGSSTYGKWCGTELSAENRKMLYIAKGFAHGFLALE 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS----VSEKDQ 167
+TE+ YK ++Y+ +DSG+ W DK I I W L +SEKD+
Sbjct: 127 DDTEIEYKCDEYYAPHYDSGIMWNDKDIAIDWNFEKNGLKEENIILSEKDK 177
>gi|281418043|ref|ZP_06249063.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum
JW20]
gi|281409445|gb|EFB39703.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum
JW20]
Length = 183
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 112/168 (66%), Gaps = 3/168 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + +++ + F D+RG+F ++Y+ K E GL FVQDNH S G +RG+HFQR
Sbjct: 11 IEGLVVVEPKIFTDTRGFFFESYNKKAFCEFGLTMEFVQDNHIKS-RIGVLRGIHFQRK- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q +LVR I G+++D+AVD+R+NSPT+G W +E+SA N YIP F H F+TLE +
Sbjct: 69 FPQGRLVRVIKGKVYDVAVDLRKNSPTFGKWYGIELSAENKKMFYIPENFGHAFLTLEDD 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
TEV+ K T+ Y E +SG+ + D ++I WP ++ + +SEKD+NLP
Sbjct: 129 TEVLCKTTNVYRPEFESGIIYNDPELNIDWPQIEGDI-VLSEKDKNLP 175
>gi|260856021|ref|YP_003229912.1| putative dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli
O26:H11 str. 11368]
gi|24417733|gb|AAN60457.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli]
gi|56800699|gb|AAW31113.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli]
gi|77737732|gb|ABB01684.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli]
gi|257754670|dbj|BAI26172.1| predicted dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli
O26:H11 str. 11368]
Length = 180
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 109/167 (65%), Gaps = 5/167 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKS-SKGVLRGLHYQLE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 67 PYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK T++Y E + + W D + I WP ++SEKD+
Sbjct: 127 IAEFVYKTTNYYHPESEGCIKWDDSFLMIDWPNKPI---AISEKDKK 170
>gi|325281623|ref|YP_004254165.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Odoribacter splanchnicus DSM
20712]
gi|324313432|gb|ADY33985.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Odoribacter splanchnicus DSM
20712]
Length = 190
Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 82/183 (44%), Positives = 113/183 (61%), Gaps = 8/183 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDC-GTIRGLHFQRP 61
I V I++ R F D RG+F +++S + + + VFVQDN S S C G +RGLHFQ+P
Sbjct: 8 IPGVVIVQPRIFGDERGYFFESFSQRDFERQVCKTVFVQDNESKS--CYGVVRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ+KLVR + GR+ D+AVDIR+ SPT+G +VS+E++ N Q +IP GFAHGF L
Sbjct: 66 PYAQSKLVRVVKGRVLDVAVDIRKGSPTFGKYVSVELTEENKRQFFIPRGFAHGFAVLST 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPF 179
YK +FY+ E + +AW D + I W P IL SEKD++ P L F
Sbjct: 126 EAVFQYKCDNFYAPESEGALAWDDPDLGIDWRIPAAKVIL---SEKDRHHPCLKDACDWF 182
Query: 180 EYD 182
+Y+
Sbjct: 183 DYN 185
>gi|312136509|ref|YP_004003846.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Methanothermus fervidus DSM
2088]
gi|311224228|gb|ADP77084.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanothermus fervidus DSM
2088]
Length = 185
Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 77/161 (47%), Positives = 102/161 (63%), Gaps = 2/161 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
++K + FED RG+F +TY++K K+ + FVQDN SFS G +RGLHFQ Q K
Sbjct: 16 VIKPKVFEDERGYFMETYNAKEFKKANINAKFVQDNQSFS-KKGVLRGLHFQYRR-QQGK 73
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR I G+IFD+AVD+R+NS TYG W S+ +S N YIP GFAHGF+ L V Y
Sbjct: 74 LVRVIKGKIFDVAVDLRKNSETYGEWESVILSGKNKKMFYIPEGFAHGFLVLSDTAIVTY 133
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
K TDFY E++ G+ W D I I WP+ + +S+KD+
Sbjct: 134 KCTDFYYPEYEGGIIWNDPDIGIEWPIDEVDKLIISDKDKK 174
>gi|241668047|ref|ZP_04755625.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Francisella philomiragia
subsp. philomiragia ATCC 25015]
gi|254876582|ref|ZP_05249292.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Francisella philomiragia
subsp. philomiragia ATCC 25015]
gi|254842603|gb|EET21017.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Francisella philomiragia
subsp. philomiragia ATCC 25015]
Length = 190
Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 115/181 (63%), Gaps = 3/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
NI V I + + D RG+F +T+ KL LG + F QDN S S G +RGLH+Q
Sbjct: 7 NIEGVVICEPKVHGDERGYFVETFREDKLFDFLGYKINFCQDNESKS-SYGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVR I GR+ D+AVDIR+ SPT+G V++E+SA+N Q+ +P GFAHGF+ LE
Sbjct: 66 PPHAQTKLVRVIQGRVLDVAVDIRKGSPTFGQHVAVELSADNKRQLLVPRGFAHGFVVLE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T YKV +YS E D G+A+ D+SI I W + L +S KD+ P LN+ F+
Sbjct: 126 NDTIFSYKVDSYYSPECDRGIAFDDESIAINWQVPSDKL-KLSAKDKVQPKLNETVDLFD 184
Query: 181 Y 181
Y
Sbjct: 185 Y 185
>gi|167627477|ref|YP_001677977.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Francisella philomiragia
subsp. philomiragia ATCC 25017]
gi|167597478|gb|ABZ87476.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Francisella philomiragia
subsp. philomiragia ATCC 25017]
Length = 190
Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 114/181 (62%), Gaps = 3/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+IN + I + D RG+F +T+ KL LG + F QDN S S G +RGLH+Q
Sbjct: 7 HINDIIICEPTVHSDDRGYFVETFRQDKLFDFLGYKINFCQDNESKS-SYGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVR I GR+ D+AVDIR+ SPT+G +V++E+SA N QI IP GFAHGF+ LE
Sbjct: 66 APHAQTKLVRVIQGRVLDVAVDIRKGSPTFGQYVAVELSAENKKQILIPRGFAHGFVVLE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T YKV +YS E D G+A+ DKSI I W + +L +S KD+ P L+ FE
Sbjct: 126 DDTVFAYKVDSYYSPECDRGIAFDDKSIAIDWQVPVDML-KLSAKDRGQPKLDDTVDLFE 184
Query: 181 Y 181
Y
Sbjct: 185 Y 185
>gi|28377962|ref|NP_784854.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus plantarum
WCFS1]
gi|28270796|emb|CAD63701.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus plantarum
WCFS1]
Length = 182
Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 98/152 (64%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V+I++ F D RG+F++TYS + KE G+ F+QDN S S + G +RGLHFQR
Sbjct: 11 LQDVKIIEPAVFGDKRGFFTETYSDRDFKEAGIDFDFIQDNQSLSAEAGVLRGLHFQRGK 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KL+R + G + D+ VD+R SPTYG W IS +N Q+ +P GFAHGF+TL N
Sbjct: 71 AAQTKLIRVVTGAVLDVIVDVRAGSPTYGEWEGYIISESNHRQLLVPRGFAHGFVTLTDN 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
+YK ++Y+ E D G+ + DK ++I WP+
Sbjct: 131 VNFLYKCDNYYNAEADGGITFMDKDLNINWPI 162
>gi|60418017|dbj|BAD90657.1| polysaccharide synthesis enzyme [Acetobacter tropicalis]
Length = 185
Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 107/183 (58%), Gaps = 5/183 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V ++ +F D+RG+FS+TY+ +++ G+ FVQDN S S G +RGLH Q
Sbjct: 6 LAIPDVILVTPPRFGDNRGFFSETYNIDRMRDAGITQPFVQDNQSLSRQKGVVRGLHCQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC G I+D+A+D R SPTYG WV+ E+S N Q++IP GF HGF TL
Sbjct: 66 DPYAQGKLVRCTKGAIWDVAIDARTGSPTYGKWVAAELSEENWSQLWIPPGFLHGFCTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL--DTILPSVSEKDQNLPFLNQIDSP 178
N EV YK T Y+ + V W + I WP+ D IL SEKD P +
Sbjct: 126 ENAEVQYKCTGLYNKASERAVIWNSAELAIDWPVKPEDAIL---SEKDLEAPEFSAAKGW 182
Query: 179 FEY 181
F++
Sbjct: 183 FQF 185
>gi|9957843|gb|AAG09521.1|AF279620_5 dTDP-6-deoxy-D-glucose-3,5-epimerase [Salmonella enterica]
gi|226290775|gb|ACO40474.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Salmonella enterica subsp.
enterica serovar Dakar]
gi|298353037|gb|ADI77016.1| RmlC [Salmonella enterica]
Length = 183
Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 113/167 (67%), Gaps = 5/167 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I+ I++ + D+RG+F ++Y+ + ++L + + F QDN S S G +RGLHFQ
Sbjct: 8 IHEALIIEPIIYSDARGFFFESYNQLIFEDLIERKINFCQDNQSLSHK-GVLRGLHFQVN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVRC+ G+I+D+ VD+R +SPTY W +SA+N Q++IP G AHGF++LE
Sbjct: 67 PKAQGKLVRCLHGKIYDVIVDLRVDSPTYKKWEGFVLSASNKKQLWIPEGCAHGFLSLED 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
NTE+ YK T++YS++H+ + W D S+ I WPL D I +SEKD+N
Sbjct: 127 NTELAYKATEYYSLQHERCIRWNDPSLKIEWPLSDYI---ISEKDKN 170
>gi|257060586|ref|YP_003138474.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 8802]
gi|256590752|gb|ACV01639.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 8802]
Length = 176
Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 108/167 (64%), Gaps = 3/167 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+N +++ ++ ED RG+F++++ K + GL VQ N SF+ GT+RG+H+Q
Sbjct: 7 KLNGAYLIELKRLEDERGFFARSWCQKEFLDYGLDANLVQCNISFNLKKGTLRGMHYQIA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY + KL+RC G I+D+ +D+ NS ++ W+ +E+SA N L IYIP GFAHGF TLE
Sbjct: 67 PYEEVKLLRCTQGAIYDVIIDLNPNSSSFKQWIGVELSAENRLMIYIPKGFAHGFQTLED 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+TEV Y++++FY E GV W D + I WP+ D+I +SEKD+
Sbjct: 127 HTEVFYQMSEFYHPECARGVRWNDPTFAIEWPIEDSI---ISEKDRQ 170
>gi|21231461|ref|NP_637378.1| strX protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66768485|ref|YP_243247.1| strX protein [Xanthomonas campestris pv. campestris str. 8004]
gi|21113134|gb|AAM41302.1| strX protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66573817|gb|AAY49227.1| strX protein [Xanthomonas campestris pv. campestris str. 8004]
Length = 193
Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 107/167 (64%), Gaps = 3/167 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ D+RGWF++ + ++ + + GL D FVQ N+SF+ + GT+RG+H+Q PP + K
Sbjct: 13 IIEPEPRGDARGWFARVFCTQEMAQAGLVDQFVQVNNSFNAEAGTLRGMHYQLPPAPEVK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
+VRCI G ++D VD+R +SPTY W +E++A+N L +Y+P GFAHGF+TL+ TE +Y
Sbjct: 73 IVRCIRGALWDAIVDLRPDSPTYLQWYGVELTADNRLALYVPRGFAHGFITLQAQTEALY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ Y+ + G+ W D I I WP + VS+KD P N+
Sbjct: 133 FASAMYTPAAERGLRWDDARIGIRWPCTPAL---VSDKDAAWPEFNE 176
>gi|266622170|ref|ZP_06115105.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium hathewayi DSM
13479]
gi|288866122|gb|EFC98420.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium hathewayi DSM
13479]
Length = 184
Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + +++ F DSRG+F +TY+ KE GL VFVQDN S S G +RGLHFQ+
Sbjct: 10 DIKGLYVIEPTVFPDSRGYFMETYNQNDFKEAGLNMVFVQDNQSMSVK-GVLRGLHFQKQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R +S TYG W + +SA N Q YIP GFAHGF+ L
Sbjct: 69 -FPQGKLVRVVRGSVFDVAVDLRSDSETYGKWFGVLLSAENKKQFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E YK TDFY + G+ W D I I WP+ + + +S+KDQ
Sbjct: 128 EAEFAYKCTDFYHPGDEGGILWSDPEIGIDWPIEEGMELIISDKDQK 174
>gi|221213794|ref|ZP_03586768.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase) (dTDP-L-rhamnose synthetase)
[Burkholderia multivorans CGD1]
gi|221166583|gb|EED99055.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase) (dTDP-L-rhamnose synthetase)
[Burkholderia multivorans CGD1]
Length = 183
Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 79/170 (46%), Positives = 113/170 (66%), Gaps = 9/170 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQ--RPP 62
V+I++ + F D+RG+F +++++K E V FVQDNHS S G +RGLH+Q RP
Sbjct: 13 VKIIEPKVFGDARGFFFESFNAKEFVEYIEPGVEFVQDNHSRS-SKGVLRGLHYQLQRP- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KL+R IAG + D++VDIRR+SPT+G WV++ +SA+N Q+++P GFAHGF+ L
Sbjct: 71 --QGKLLRVIAGEVLDVSVDIRRSSPTFGRWVAVNVSADNKRQVWVPRGFAHGFLVLSDY 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
EV+YK TD++ EH+ +AW D + I WPL PS+S KD P L
Sbjct: 129 AEVLYKTTDYWYPEHERQIAWNDPELGIEWPL--DAPPSLSAKDAAAPLL 176
>gi|87123105|ref|ZP_01078956.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. RS9917]
gi|86168825|gb|EAQ70081.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. RS9917]
Length = 196
Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 106/168 (63%), Gaps = 4/168 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+L ++F D RGWF ++++ + +G FVQDNHS S G +RGLH+Q P QA
Sbjct: 19 LLTPQRFGDDRGWFFESWNQRRFDAAVGEHVAFVQDNHSRS-SQGVLRGLHYQLPAAPQA 77
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR GRIFD+ VD+R +SP+ G W +E+SA+N Q+++P GFAHGF+TL EV
Sbjct: 78 KLVRASVGRIFDVVVDLRTSSPSNGQWAGVELSADNQQQLWVPEGFAHGFLTLSAVAEVQ 137
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFL 172
YK ++S E + + W D ++ I+WPL L+ S+SEKD P L
Sbjct: 138 YKTRGYWSREQERAIRWDDPALAISWPLENLEGTAVSLSEKDAQAPTL 185
>gi|145588444|ref|YP_001155041.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145046850|gb|ABP33477.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 184
Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 109/167 (65%), Gaps = 3/167 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V +++ F D RGWF++++++ GL FVQDNHSFS T+RGLH+Q
Sbjct: 10 IHDVLVIEPTVFGDERGWFTESFNAVDFADATGLTVNFVQDNHSFSRQW-TLRGLHYQLE 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR +AG +FD+AVDIR+ SPTYG WV +E+SA N Q+++P G AHGF+ L
Sbjct: 69 K-TQGKLVRVVAGSVFDVAVDIRKESPTYGKWVGIELSAQNHKQLWVPPGLAHGFLVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK TD+Y + ++ + W D ++ I WPL + + P+++ KD +
Sbjct: 128 TAEFLYKTTDYYHPQSEACLVWNDPTVAIAWPLPEGVNPNMNAKDMS 174
>gi|319957143|ref|YP_004168406.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Nitratifractor salsuginis DSM
16511]
gi|319419547|gb|ADV46657.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitratifractor salsuginis DSM
16511]
Length = 191
Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 84/181 (46%), Positives = 116/181 (64%), Gaps = 3/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I++ + D RG+F +TY + L+E LG + F QDN S S G +RGLH+Q
Sbjct: 7 DIPDVIIVEPKIHGDERGYFVETYRADKLEEFLGYKINFCQDNESKS-SYGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVR I G++ D+AVDIR++SPT+G +V++E+S N Q+ IP GFAHGF+ LE
Sbjct: 66 PPHAQTKLVRVIKGKVLDVAVDIRKSSPTFGQYVAVELSEENKKQLLIPRGFAHGFLVLE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T YKV +YS E D G+A+ D I I W + L +S KD+ P L+ D FE
Sbjct: 126 DDTVFAYKVDSYYSPECDRGIAFDDPEIGIDWRIPHDKL-ILSAKDKAQPKLSDTDDLFE 184
Query: 181 Y 181
Y
Sbjct: 185 Y 185
>gi|71906878|ref|YP_284465.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dechloromonas aromatica RCB]
gi|71846499|gb|AAZ45995.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dechloromonas aromatica RCB]
Length = 177
Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 105/163 (64%), Gaps = 2/163 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ R F D RG+F ++++ KL + +G FVQDNHS S +RGLH+Q P
Sbjct: 8 IPDVLIIEPRVFGDDRGFFYESFNQKLFNDAVGCDVTFVQDNHSKSAK-NVLRGLHYQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLVR + G +FD+AVDIR++SPTYG WV + +SA N QI+IP G AHGF+TL
Sbjct: 67 PKEQGKLVRVVQGEVFDVAVDIRKDSPTYGRWVGVTLSAENKKQIWIPQGLAHGFLTLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSE 164
E +YK T++Y+ E + + W D ++I WP+ L SV +
Sbjct: 127 TAEFLYKTTEYYAPEAERCIRWNDSKLNIKWPIEGGALLSVKD 169
>gi|239628626|ref|ZP_04671657.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239518772|gb|EEQ58638.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 187
Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + +++ F D RG+F +TY+ +E GL VFVQDN S S G +RGLHFQ+
Sbjct: 12 DIKGLYVIEPTVFRDERGYFVETYNQNDFREAGLDMVFVQDNQSMSVK-GVLRGLHFQKQ 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G +FD+AVD+R +S TYG W + +SA N Q YIP GFAHGF+ L
Sbjct: 71 -YPQGKLVRAVRGTVFDVAVDLRSDSETYGKWFGVVLSAENKKQFYIPEGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E YK TDFY + G+ W D + + WP+ D + +SEKD+
Sbjct: 130 EAEFAYKCTDFYHPGDEGGLKWDDPEVGVDWPVSDGMELIISEKDRK 176
>gi|256420555|ref|YP_003121208.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chitinophaga pinensis DSM
2588]
gi|256035463|gb|ACU59007.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chitinophaga pinensis DSM
2588]
Length = 188
Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 111/177 (62%), Gaps = 6/177 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+ + R F D+RG+F ++YS + + GLQ FVQDN + S G +RGLH+Q+ P+AQ K
Sbjct: 13 VYEPRVFNDNRGYFFESYSEQAFLQQGLQLKFVQDNQARS-TYGVLRGLHYQQEPHAQTK 71
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR + GRI D+AVDIR+ SPTYG ++E+SA N Q+ +P GFAHG+ L EV+Y
Sbjct: 72 LVRVLEGRIIDVAVDIRKGSPTYGKVFTIELSAENKKQLLVPKGFAHGYSVLSETAEVMY 131
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
KV +FY + G+ + D +++I W L D + VSEKD LP L F Y+
Sbjct: 132 KVDNFYHKASEGGIIYNDPALNIDWGISLTDAL---VSEKDVILPTLENCTHNFVYN 185
>gi|9957858|gb|AAG09533.1|AF279623_4 dTDP-6-deoxy-D-glucose-3,5-epimerase [Salmonella enterica]
Length = 182
Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 110/163 (67%), Gaps = 2/163 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ F + RG+F ++++ ++ + L V FVQDNHS S +RGLH+Q PYA
Sbjct: 11 VFILEPLVFVNERGFFMESFNHRVFETLLDTKVNFVQDNHSKSTK-NVVRGLHYQTEPYA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRCI+G ++D+AVD+R S TYGCWV +E+SA N Q++IP GFAHGF+TL N E
Sbjct: 70 QGKLVRCISGAVYDVAVDLRSTSQTYGCWVGVELSALNMRQLWIPEGFAHGFLTLTDNVE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+YK T++Y+ E + + + D +DI WP+ + VS+KD+
Sbjct: 130 FLYKTTNYYNKESERCIRYNDPDLDIIWPISNKDNIIVSDKDK 172
>gi|94497766|ref|ZP_01304333.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingomonas sp. SKA58]
gi|94422815|gb|EAT07849.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingomonas sp. SKA58]
Length = 181
Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 108/170 (63%), Gaps = 3/170 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ R F D RG+F ++Y++ K GL FVQDNHS S G +RGLHFQ P Q K
Sbjct: 13 IIEPRVFGDERGFFYESYNAGAFKAAGLDLNFVQDNHSKSAK-GVLRGLHFQNP-NPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR AGR++D+AVDIRR+SP +G WV +E+SA N ++P GFAHGF+ LE TE +Y
Sbjct: 71 LVRVTAGRVWDVAVDIRRSSPHFGKWVGVELSAANKRMFWVPEGFAHGFIALEDGTEFLY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
K T Y + + W D ++ I WP L+ + P +S KD L++I++
Sbjct: 131 KCTATYDPSAEHSLMWNDPAVGIEWP-LEGLEPQLSGKDAQGKALSEIEA 179
>gi|325261283|ref|ZP_08128021.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium sp. D5]
gi|324032737|gb|EGB94014.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium sp. D5]
Length = 193
Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 104/168 (61%), Gaps = 2/168 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + +++ DSRG+F +TY+ + E GL VFVQDN S S G +RGLHFQ
Sbjct: 21 IEGLYVIEPTVHRDSRGYFIETYNQNDMHEAGLDLVFVQDNQSMS-TKGVLRGLHFQNQ- 78
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q KLVR I G ++D+AVD+R+NS TYG W LE+S N Q YI GFAHGF+ +
Sbjct: 79 YPQGKLVRVIQGSVYDVAVDVRKNSKTYGQWFGLELSEENNKQFYISEGFAHGFLVMSDV 138
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
+KVTDF+ +++ G+ W D +I + WPL P +SEKD++ P
Sbjct: 139 ARFCFKVTDFWHPDNEIGIPWDDSAIGVEWPLKKGQEPIISEKDKHYP 186
>gi|253583524|ref|ZP_04860722.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Fusobacterium varium ATCC
27725]
gi|251834096|gb|EES62659.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Fusobacterium varium ATCC
27725]
Length = 475
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 111/176 (63%), Gaps = 9/176 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N+ + I++ F D RG+F ++Y+ +++G+ + FVQDNHS S G +RGLHFQ
Sbjct: 10 NLQGIYIIEPLVFGDDRGFFLESYNKSEFEKIGIFEEFVQDNHSKS-KKGVLRGLHFQ-T 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
++QAKL+R I G+IFDI VDIR++S TYG W E+SA N +YI GFAHGF+ LE
Sbjct: 68 RHSQAKLIRVIKGKIFDIVVDIRKSSFTYGKWCGTELSAENKKMLYISKGFAHGFLALED 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-------LDTILPSVSEKDQNLP 170
+TE+ YK +FY+ ++DSG+ W DK I+I W D IL +K Q+
Sbjct: 128 DTEIEYKCDEFYNAQYDSGIMWNDKDININWNFEKYGIKEEDIILSEKDKKHQSFK 183
>gi|146298097|ref|YP_001192688.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Flavobacterium johnsoniae
UW101]
gi|146152515|gb|ABQ03369.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Flavobacterium johnsoniae
UW101]
Length = 182
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 111/177 (62%), Gaps = 2/177 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ F D RG+F ++YS ++L + FVQDN SFS GT+RGLH+Q PP
Sbjct: 8 IKDLLIVEPTIFGDERGYFFESYSKTKFEDLDIHIDFVQDNQSFS-KRGTLRGLHYQNPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVR + G I D+AVD+R++S TYG S+ +S+ N Q+ +P GFAHGF +
Sbjct: 67 FAQTKLVRVLEGEIIDVAVDLRKDSATYGKVFSVLLSSENKKQLLVPQGFAHGFSVISET 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
V+YK FY+ + G+ + D S++I W +D VSEKDQ LPFL+ +S F
Sbjct: 127 ASVMYKCDQFYNKASEGGIRFDDSSLNIDWG-MDLKDAIVSEKDQKLPFLDNCNSLF 182
>gi|330834783|ref|YP_004409511.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Metallosphaera cuprina Ar-4]
gi|329566922|gb|AEB95027.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Metallosphaera cuprina Ar-4]
Length = 185
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 114/182 (62%), Gaps = 8/182 (4%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M I V ++ +++F DSRG+F + Y K + F Q NHSFS G +RGLHFQ
Sbjct: 8 MEIPEVVLIISKQFSDSRGYFEELYKESDFKNY-VPCNFPQINHSFS-KKGVLRGLHFQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLV I G+IFD+ VD+R SPTY WVS+E++ G ++IP GF HGF LE
Sbjct: 66 NPYAQGKLVTVIFGKIFDVGVDLRVGSPTYKKWVSVELTP--GKLLWIPAGFTHGFYALE 123
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ VIY VT +S +HDSG+ W D I++ WP D P +S+KD+NLP L + + F+
Sbjct: 124 -ESHVIYMVTKEFSKDHDSGIIWNDDEINVKWPAND---PMLSDKDRNLPRLRESKANFK 179
Query: 181 YD 182
Y+
Sbjct: 180 YN 181
>gi|312898304|ref|ZP_07757694.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Megasphaera micronuciformis
F0359]
gi|310620223|gb|EFQ03793.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Megasphaera micronuciformis
F0359]
Length = 192
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 111/174 (63%), Gaps = 3/174 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ + F D RG+F ++++ + ++ GL FVQDNHS S GT+RG+HFQ AQAK
Sbjct: 15 IIEPQVFGDHRGFFMESWNKRTMETAGLFYNFVQDNHSSSTVKGTLRGIHFQYGDKAQAK 74
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVRC+ G + D+AVD+R++SPTY W +E+S N Q IP GF HGF+TL + +Y
Sbjct: 75 LVRCVRGAVLDVAVDLRKDSPTYKQWYGIELSEENQKQFLIPRGFGHGFVTLTDHVGFMY 134
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
K ++Y+ + D G+ W D ++ I W + + IL SEKD PF +++++ +
Sbjct: 135 KADNYYAPDADGGIRWNDPTLAINWGIENPIL---SEKDNKSPFFDELENKISF 185
>gi|282891818|ref|ZP_06300298.1| hypothetical protein pah_c198o003 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281498251|gb|EFB40590.1| hypothetical protein pah_c198o003 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 185
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 107/163 (65%), Gaps = 3/163 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
++ K D RG+F++ + K + GL+ VQ N+S+S + GT+RGLH+Q PP+ + K
Sbjct: 13 LIDLNKLGDERGFFARLFCQKEFTQQGLEPAVVQVNNSYSVEKGTLRGLHYQLPPFEETK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVRCI G ++D+ VD+R +SPT+ +SA N L +Y+P GFAHGFMTL+ N+E++Y
Sbjct: 73 LVRCIQGSLYDVIVDLRVDSPTFKKSFGAVLSAENRLMMYVPKGFAHGFMTLQPNSEIMY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
V+ FYS E + GV W D + I WP+ ++ +SE+D+ P
Sbjct: 133 FVSQFYSKECERGVRWDDPTFSIEWPVKPSL---ISERDKMHP 172
>gi|18309599|ref|NP_561533.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens str.
13]
gi|18144276|dbj|BAB80323.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens str.
13]
Length = 160
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 101/161 (62%), Gaps = 2/161 (1%)
Query: 23 QTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVD 82
+TYS K +E GL FVQDN S S G +RGLHFQ + Q KLVR G ++D+AVD
Sbjct: 2 ETYSQKAFEEAGLTMKFVQDNESKS-KKGVLRGLHFQ-TKHTQGKLVRVTQGEVWDVAVD 59
Query: 83 IRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVA 142
+R+ SPT+G W + +SA N Q Y+P GFAHGF+ L YK TDFY+ E+DSG+
Sbjct: 60 LRKGSPTFGQWEGVHLSAENKRQFYVPEGFAHGFVVLSDEAVFNYKCTDFYAPEYDSGLL 119
Query: 143 WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
W DK +++ WPL +SEKD+ L ++D PF Y+G
Sbjct: 120 WNDKYVNVEWPLEGIEEIILSEKDKKQKTLKELDIPFIYEG 160
>gi|260495066|ref|ZP_05815195.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 3_1_33]
gi|260197509|gb|EEW95027.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 3_1_33]
Length = 164
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 105/154 (68%), Gaps = 6/154 (3%)
Query: 23 QTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVD 82
++Y+ KELG++++FVQDNHS S G +RGLHFQ+ Y+QAKLVR + G + DIA+D
Sbjct: 2 ESYNYNTFKELGIENIFVQDNHSKSLK-GVLRGLHFQKGEYSQAKLVRVLKGAVLDIAID 60
Query: 83 IRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVA 142
+R+NS T+G +V++E+S N +IP FAHGF+TLE NTE+ YK +FY+ + ++G+
Sbjct: 61 LRKNSKTFGKYVTVELSEKNKKMFFIPRNFAHGFLTLEDNTEIFYKCDNFYNPKSEAGIM 120
Query: 143 WQDKSIDITWPLLDTILPS----VSEKD-QNLPF 171
W DK ++I W + +SEKD +N+ F
Sbjct: 121 WNDKDLNIEWNFKKYGINENELIISEKDKKNMSF 154
>gi|329569822|gb|EGG51581.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX1467]
Length = 175
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 105/173 (60%), Gaps = 9/173 (5%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F + RG+F+++YS E GL FVQDNHS S + G +RGLHFQ+ AQ KL+R +
Sbjct: 4 FGNHRGFFTESYSKAKFAEHGLDFDFVQDNHSLSTEAGVLRGLHFQKGEAAQTKLIRVVT 63
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G + D+ VDIR+ SPTYG W +S +N Q+ +P GFAHGF+TL N +YK ++Y
Sbjct: 64 GAVLDVIVDIRKGSPTYGQWEGYILSEHNHRQLLVPKGFAHGFVTLTPNVNFMYKCDNYY 123
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPS---VSEKDQNLPFLNQIDS--PFEY 181
+ D G+A+ D ++ I WP I P SEKDQ P L + ++ PF Y
Sbjct: 124 NAAADGGIAFNDPALAIDWP----IAPEKAITSEKDQKHPTLKEFEAENPFIY 172
>gi|28868292|ref|NP_790911.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato str. DC3000]
gi|28851529|gb|AAO54606.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato str. DC3000]
gi|331019588|gb|EGH99644.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 181
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 112/170 (65%), Gaps = 7/170 (4%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + + F D RG+F ++++ K +E+ G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVIVFEPKTFGDDRGFFFESFNQKAFEEVVGRSVKFVQDNHSRSVK-GVLRGLHYQ 64
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
+ P Q KLVR G +FD+AVD+R++SPT+G WV L ++A N Q++IP GFAHGF+
Sbjct: 65 IQQP--QGKLVRVTVGEVFDVAVDLRKSSPTFGKWVGLHLTAENKKQLWIPEGFAHGFIV 122
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
L + E +YK TD+++ EH+ +AW D ++ I WP +T PS+S KDQ
Sbjct: 123 LSESAEFLYKTTDYWAPEHERSLAWNDATVGIEWPFSET--PSLSAKDQK 170
>gi|227891399|ref|ZP_04009204.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus salivarius ATCC
11741]
gi|301299657|ref|ZP_07205914.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|227866788|gb|EEJ74209.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus salivarius ATCC
11741]
gi|300215157|gb|ADJ79573.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus salivarius CECT
5713]
gi|300852751|gb|EFK80378.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 193
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 111/182 (60%), Gaps = 5/182 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V+++ F D+RG+F+++YS + K G+ F+QDNHS S G +RGLHFQR
Sbjct: 11 LQDVKLITPAVFGDNRGFFTESYSDRDFKAAGIDFDFIQDNHSLSTQAGVLRGLHFQRGK 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KL+R G + D+ VD+R+ SPTY W +S +N Q+ +P G+AHGF+TL N
Sbjct: 71 AAQTKLIRVATGAVLDVIVDLRKGSPTYKQWEGYILSESNHRQLLVPKGYAHGFVTLTDN 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQI--DSPF 179
+YK ++Y E D G++++ ++I WP+ LD + SEKD N P L + D+PF
Sbjct: 131 VNFLYKCDNYYDAEADGGISFKTPELNIDWPIDLDKAI--TSEKDANQPTLTEFEKDNPF 188
Query: 180 EY 181
Y
Sbjct: 189 VY 190
>gi|149195145|ref|ZP_01872236.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caminibacter mediatlanticus
TB-2]
gi|149134697|gb|EDM23182.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caminibacter mediatlanticus
TB-2]
Length = 187
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 2/168 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I++ + F D RG+F +T+ L ++ + F+QDN S S G +RGLH+Q PP+AQ
Sbjct: 11 VVIIEPKVFGDDRGYFMETFRQDLFEKNIRKIDFIQDNESKS-KRGVLRGLHYQLPPFAQ 69
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
+KLVR I G++ D+AVDIR+NSPT+ +V++E+S N Q++IP GFAHGF+ L
Sbjct: 70 SKLVRVIKGKVLDVAVDIRKNSPTFKQYVAVELSEENKRQLFIPRGFAHGFLVLSDEAIF 129
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
YKV ++YS EHD + + D I I W L +SEKD+N PFL
Sbjct: 130 TYKVDNYYSPEHDRSIRFDDLEIGIDWNFPKEEL-IISEKDKNAPFLK 176
>gi|29346748|ref|NP_810251.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides thetaiotaomicron
VPI-5482]
gi|29338645|gb|AAO76445.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides thetaiotaomicron
VPI-5482]
Length = 182
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 108/174 (62%), Gaps = 6/174 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI V I++ R F+D RG+F +++S + +E + FVQDN S S G +RGLHFQ+P
Sbjct: 7 NIEGVVIIEPRIFKDDRGYFFESFSQREFEEKVCKTTFVQDNESKS-SYGVLRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR I G + D+AVDIR+ SPT+G +VS+E++ N Q +IP GFAHGF L
Sbjct: 66 PFAQSKLVRVIKGAVLDVAVDIRKGSPTFGQYVSVELTGENHRQFFIPRGFAHGFSVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLN 173
YK +FYS + + +AW D ++I W P +L SEKD P L
Sbjct: 126 EVIFQYKCDNFYSPQSEGAIAWNDPDLNIDWRIPAEKVVL---SEKDSKHPRLK 176
>gi|326385995|ref|ZP_08207619.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Novosphingobium
nitrogenifigens DSM 19370]
gi|326209220|gb|EGD60013.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Novosphingobium
nitrogenifigens DSM 19370]
Length = 149
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/143 (53%), Positives = 96/143 (67%), Gaps = 3/143 (2%)
Query: 39 FVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEI 98
FVQ+N S S GTIRGLHFQ P+AQ KLVRC+ G IFD+AVD+R SPTYG W +
Sbjct: 6 FVQENQSLSMAQGTIRGLHFQSEPFAQGKLVRCVEGAIFDVAVDLRHGSPTYGQWAGATL 65
Query: 99 SANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTI 158
+A + Q++IP+GFAHGF TL T V YKVT +YS E+D G+AW D +++ WP D
Sbjct: 66 TAQDCNQLWIPSGFAHGFCTLVPQTVVAYKVTAYYSRENDLGLAWDDPDVNVAWP--DVA 123
Query: 159 LPS-VSEKDQNLPFLNQIDSPFE 180
P+ +S KDQ P L + S FE
Sbjct: 124 DPTKLSAKDQVQPRLADLPSYFE 146
>gi|209883703|ref|YP_002287560.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oligotropha carboxidovorans
OM5]
gi|209871899|gb|ACI91695.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oligotropha carboxidovorans
OM5]
Length = 181
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 109/172 (63%), Gaps = 4/172 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
++ V +++ + F D+RG+F ++++++ +E +DV FVQDN S S G +RGLH+Q
Sbjct: 7 TLDGVVVIEPQVFTDARGYFFESFNAERFRERVARDVTFVQDNQSLS-RKGVVRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KLVR +AG IFD+AVDIR+ S +G W +SA N Q+++P G+AHGF L
Sbjct: 66 APKAQGKLVRALAGEIFDVAVDIRKGSKQFGQWFGTILSAENKKQLWVPEGYAHGFQVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
EV+YK TDF+S H+ + W D ++ I WPL + + VS KD P L
Sbjct: 126 ETAEVLYKTTDFWSAAHERAIRWDDPTLAIDWPLKEGCI--VSGKDGEAPLL 175
>gi|256830322|ref|YP_003159050.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfomicrobium baculatum
DSM 4028]
gi|256579498|gb|ACU90634.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfomicrobium baculatum
DSM 4028]
Length = 185
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 108/173 (62%), Gaps = 9/173 (5%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIR 54
MN P+ I L R F D RG+F ++++++ K G+ VFVQDNHS S G +R
Sbjct: 1 MNAKPLSIPEVILLTPRVFGDDRGFFYESFNAQAFTKATGVATVFVQDNHSCS-QRGVLR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
GLH+Q PPYAQ KLVR + G +FD+AVDIRR S T+G WV +SA N Q++IP GFAH
Sbjct: 60 GLHYQLPPYAQGKLVRVVHGEVFDVAVDIRRYSSTFGKWVGTLLSAENKRQLWIPPGFAH 119
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
GF+TL E +YK T +Y+ + + W D I I WP + P +S+KD+
Sbjct: 120 GFITLSDRAEFLYKTTAYYAPVAERCIRWNDLDIGIDWPYSEA--PFLSKKDK 170
>gi|194466300|ref|ZP_03072287.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus reuteri 100-23]
gi|194453336|gb|EDX42233.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus reuteri 100-23]
Length = 193
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 108/182 (59%), Gaps = 5/182 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V+I+ F D RG+F +TYS + K G+ FVQDN S S G +RGLHFQR
Sbjct: 11 LQDVKIITPAVFGDHRGFFEETYSDRDFKAAGIDFDFVQDNQSLSTQAGVLRGLHFQRGK 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KL+R + G + D+ VD+R+ SPTY W +SA+N Q+ +P GFAHGF+TL N
Sbjct: 71 AAQTKLIRVVTGAVLDVIVDLRKGSPTYKQWEGYILSASNHRQLLVPRGFAHGFLTLTDN 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQI--DSPF 179
+YK ++Y E D G++++ ++I WP+ D + SEKD P L + D+PF
Sbjct: 131 VNFVYKCDNYYDAEADGGISFKTPELNIDWPIEFDKAI--TSEKDAAQPTLTEFEKDNPF 188
Query: 180 EY 181
Y
Sbjct: 189 VY 190
>gi|91202740|emb|CAJ72379.1| strongly sinmilar to dTDP-4-deoxyrhamnose 3,5 epimerase [Candidatus
Kuenenia stuttgartiensis]
Length = 187
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 108/170 (63%), Gaps = 5/170 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V ++K + F D RG+F +T+ E+G+ FVQDNHS+S T+RGLH+Q + Q
Sbjct: 13 VVLIKPQVFRDDRGFFLETFHKNKYAEVGISGNFVQDNHSYS-KKNTLRGLHYQLL-HPQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV I+G IFD+AVDIRR SP++G W + +SA N Q+YIP GFAHGF+ L +V
Sbjct: 71 GKLVYVISGEIFDVAVDIRRGSPSFGKWTGVHLSAENKYQLYIPEGFAHGFLVLSETADV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+YK T+ Y+ + D G+ W D +I+ITW + P +S+KDQ L I
Sbjct: 131 LYKCTEIYTPDDDYGILWSDPAINITW---QSSSPILSKKDQEYQTLKNI 177
>gi|188588633|ref|YP_001922562.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum E3 str.
Alaska E43]
gi|188498914|gb|ACD52050.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum E3 str.
Alaska E43]
Length = 192
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 108/175 (61%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I+ V I++ + F D+RG+F +TY+ + E GL FVQDN S S G +RGLHFQ+
Sbjct: 10 SIDGVYIIEPKVFGDNRGYFMETYNREQFLEAGLDMTFVQDNESRS-TKGVLRGLHFQKK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
++Q KLVR G +FD+AVD+R SPTYG + ++ ++ N Q YIP GFAHGF+ L
Sbjct: 69 -HSQGKLVRATKGEVFDVAVDLRHGSPTYGKYEAVILTEENKKQFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YK TD Y+ E+D GV W D I+I WPL +SEKD+ P L +D
Sbjct: 128 EAVFNYKCTDLYAPEYDGGVMWNDNDINIKWPLDKIEDIVLSEKDKVHPNLKDLD 182
>gi|213967238|ref|ZP_03395387.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato T1]
gi|301381026|ref|ZP_07229444.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato Max13]
gi|302059365|ref|ZP_07250906.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato K40]
gi|302134882|ref|ZP_07260872.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|213928080|gb|EEB61626.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato T1]
Length = 181
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 112/170 (65%), Gaps = 7/170 (4%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + + F D RG+F ++++ K +E+ G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVIVFEPKTFGDDRGFFFESFNQKAFEEVVGRPVKFVQDNHSRSVK-GVLRGLHYQ 64
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
+ P Q KLVR G +FD+AVD+R++SPT+G WV L ++A N Q++IP GFAHGF+
Sbjct: 65 IQQP--QGKLVRVTVGEVFDVAVDLRKSSPTFGKWVGLHLTAENKKQLWIPEGFAHGFIV 122
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
L + E +YK TD+++ EH+ +AW D ++ I WP +T PS+S KDQ
Sbjct: 123 LSESAEFLYKTTDYWAPEHERSLAWNDATVGIEWPFSET--PSLSAKDQK 170
>gi|110640208|ref|YP_680418.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cytophaga hutchinsonii ATCC
33406]
gi|110282889|gb|ABG61075.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cytophaga hutchinsonii ATCC
33406]
Length = 181
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 110/181 (60%), Gaps = 5/181 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + V ++ F D RG+F +TY+ + + GL FVQDNHS S G +RGLHFQ+
Sbjct: 6 LELKDVILISPNVFGDERGFFMETYNKAVFSKAGLDREFVQDNHSKS-SAGVLRGLHFQK 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVR G I+DI VD+R+NS TY + + + + +Y+P GFAHGF+++E
Sbjct: 65 NPYAQGKLVRATKGSIWDIVVDLRKNSATYKKAIKILLDDKDKRMLYVPEGFAHGFISIE 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ EV YK T+ Y+ E + G+ W D + I W + + P VS KDQ LP+L I+S
Sbjct: 125 -DCEVQYKCTNLYNKESEGGIRWNDPELGIDWGIEN---PVVSTKDQELPYLKDIESALN 180
Query: 181 Y 181
+
Sbjct: 181 F 181
>gi|150006431|ref|YP_001301175.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides vulgatus ATCC
8482]
gi|237712178|ref|ZP_04542659.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 9_1_42FAA]
gi|237726325|ref|ZP_04556806.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D4]
gi|254881652|ref|ZP_05254362.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 4_3_47FAA]
gi|265751869|ref|ZP_06087662.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_1_33FAA]
gi|294777048|ref|ZP_06742506.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides vulgatus PC510]
gi|319643037|ref|ZP_07997670.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_1_40A]
gi|149934855|gb|ABR41553.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides vulgatus ATCC
8482]
gi|229434851|gb|EEO44928.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides dorei 5_1_36/D4]
gi|229453499|gb|EEO59220.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 9_1_42FAA]
gi|254834445|gb|EET14754.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 4_3_47FAA]
gi|263236661|gb|EEZ22131.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_1_33FAA]
gi|294449106|gb|EFG17648.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides vulgatus PC510]
gi|317385318|gb|EFV66264.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_1_40A]
Length = 189
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 114/181 (62%), Gaps = 4/181 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V IL+ R F D+RG+F +++S + +E + FVQDN SFS G +RGLHFQ+PP
Sbjct: 8 IDGVFILEPRIFNDARGYFFESFSGREFEEKVCRTTFVQDNESFS-TYGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q+KLVR I G + D+AVDIR+ SPT+G V++E++ N Q +IP GFAHGF L
Sbjct: 67 FTQSKLVRVIKGAVLDVAVDIRKGSPTFGKHVAVELTGENHRQFFIPRGFAHGFAVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +Y+ + + G+AW D + I W L D ++ +S+KD+ P L + F++
Sbjct: 127 VLFQYKCDHYYAPQSEGGIAWDDPDLGIDWRLPADKVI--LSDKDKKHPRLKDYQTDFDF 184
Query: 182 D 182
+
Sbjct: 185 N 185
>gi|124004205|ref|ZP_01689051.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Microscilla marina ATCC
23134]
gi|123990275|gb|EAY29774.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Microscilla marina ATCC
23134]
Length = 183
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 114/173 (65%), Gaps = 3/173 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+ + R FED RG+F ++++ ++ K G+ F+QDNHSFS G +RGLHFQ+PP+AQA
Sbjct: 13 LFEPRIFEDDRGYFYESFNQNEFTKATGITSPFIQDNHSFS-KKGVLRGLHFQKPPHAQA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KL++ I G I+D+ VD+R++SPT+ + E+SA N Q+Y+P GFAHGF+ L + EV+
Sbjct: 72 KLIKVIQGTIWDVVVDLRKDSPTFSQHLGFELSAGNKKQLYVPQGFAHGFIVLSDSAEVL 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
YK +FY+ + +SG+ + D + I W +D+ +SEKD L + PF
Sbjct: 132 YKCDNFYAPQAESGIIYNDSDLAIDWK-IDSSNIIISEKDAVLATFQPSNIPF 183
>gi|224535807|ref|ZP_03676346.1| hypothetical protein BACCELL_00671 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522530|gb|EEF91635.1| hypothetical protein BACCELL_00671 [Bacteroides cellulosilyticus
DSM 14838]
Length = 190
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 111/182 (60%), Gaps = 6/182 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V I++ R F D RG+F +++S E + FVQDN S S G +RGLHFQ+ P
Sbjct: 8 IDGVVIIEPRIFCDERGYFFESFSQLEFDEKVMPINFVQDNESMS-SYGVMRGLHFQKMP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q+KLVRC+ G + D+AVDIR+ SPTYG V++E+S +N Q +IP GFAHGF L
Sbjct: 67 YTQSKLVRCVKGAVLDVAVDIRKGSPTYGQHVAVELSEDNHRQFFIPRGFAHGFSVLTEI 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPFE 180
YK +FY+ + D G+ D S+ I W P IL SEKD P L + DSPF+
Sbjct: 127 AVFQYKCDNFYAPQADGGIQLIDGSLGIDWRIPTNKVIL---SEKDLKHPLLAEYDSPFD 183
Query: 181 YD 182
Y+
Sbjct: 184 YN 185
>gi|156340233|ref|XP_001620391.1| hypothetical protein NEMVEDRAFT_v1g231483 [Nematostella vectensis]
gi|156205251|gb|EDO28291.1| predicted protein [Nematostella vectensis]
Length = 181
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 109/164 (66%), Gaps = 5/164 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ + F D RG+F ++++++ E GLQ FVQDNHS S G +RGLH+Q A
Sbjct: 11 VIILEPKVFGDQRGFFFESFNARSFAEATGLQREFVQDNHSRS-QRGVLRGLHYQ-VQQA 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR AG ++D+AVD+RR+SPT+G WV + +SA N Q+++P GFAHGF+ L E
Sbjct: 69 QGKLVRVTAGEVYDVAVDLRRSSPTFGRWVGVHLSAENNRQLWVPEGFAHGFVVLSEFAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+YK TD+Y+ EH+ + W D ++ I WPL P +S KDQ+
Sbjct: 129 FLYKTTDYYAPEHERCIRWDDPTLAIDWPLDGA--PQLSAKDQS 170
>gi|91776362|ref|YP_546118.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacillus flagellatus
KT]
gi|91710349|gb|ABE50277.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacillus flagellatus
KT]
Length = 182
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 115/182 (63%), Gaps = 9/182 (4%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIR 54
MN+ P I + + F D+RG+F ++++ K +E +G + FVQDNHS S G +R
Sbjct: 1 MNVTPTHIPDVIVFEPKIFGDARGFFFESFNQKAFEEAVGRKYDFVQDNHSKS-SKGVLR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
GLH+Q AQ KLVR +AG +FD+AVDIR++SPT+G WV +SA N Q+++P GFAH
Sbjct: 60 GLHYQIQ-QAQGKLVRVVAGEVFDVAVDIRKSSPTFGQWVGQHLSAENKKQMWVPPGFAH 118
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
GF+ L E +YK TDFY+ H+ ++W D + I WP + T P +S KDQ L+Q
Sbjct: 119 GFLVLSETAEFLYKTTDFYAPAHERCLSWNDPVVGIEWPDIGTP-PLLSSKDQQGLGLHQ 177
Query: 175 ID 176
+
Sbjct: 178 TE 179
>gi|158333602|ref|YP_001514774.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acaryochloris marina
MBIC11017]
gi|158303843|gb|ABW25460.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acaryochloris marina
MBIC11017]
Length = 187
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 113/186 (60%), Gaps = 12/186 (6%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ-RPPYA 64
V +++ R F D RG+F +TY + G+ ++FVQDNHS S GT+RGLHFQ + P
Sbjct: 11 VLVIEPRVFSDQRGFFLETYHRQRYTASGIDEIFVQDNHSRSAH-GTLRGLHFQLKSP-- 67
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR AG +FD+AVDIRR SP +G W +S N Q+Y+P GFAHGF L +
Sbjct: 68 QGKLVRVSAGEVFDVAVDIRRGSPYFGQWFGEYLSGENNKQMYVPPGFAHGFCVLSETAD 127
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGL 184
+YK +DFY + GVAW D ++ I WP+ IL S+KD LP ++++ D L
Sbjct: 128 FMYKCSDFYDPTDEQGVAWDDPALAIDWPIDQPIL---SKKDAALPKMSEL-----MDCL 179
Query: 185 PLLSLN 190
P +++
Sbjct: 180 PRFAMS 185
>gi|194466818|ref|ZP_03072805.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus reuteri 100-23]
gi|194453854|gb|EDX42751.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus reuteri 100-23]
Length = 193
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 108/182 (59%), Gaps = 5/182 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V+I+ F D RG+F +TYS + K G+ F+QDN S S G +RGLHFQR
Sbjct: 11 LQDVKIITPAVFGDHRGFFEETYSDRDFKAAGIDFNFIQDNQSLSTQAGVLRGLHFQRGK 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KL+R + G + D+ VD+R+ SPTY W +SA+N Q+ +P GFAHGF+TL N
Sbjct: 71 AAQTKLIRVVTGAVLDVIVDLRKGSPTYKQWEGYILSASNHRQLLVPRGFAHGFLTLTDN 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQI--DSPF 179
+YK ++Y E D G++++ ++I WP+ D + SEKD P L + D+PF
Sbjct: 131 VNFVYKCDNYYDAEADGGISFKTPELNIDWPIEFDKAI--TSEKDAAQPTLTEFEKDNPF 188
Query: 180 EY 181
Y
Sbjct: 189 VY 190
>gi|124025562|ref|YP_001014678.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prochlorococcus marinus str.
NATL1A]
gi|123960630|gb|ABM75413.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prochlorococcus marinus str.
NATL1A]
Length = 193
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 107/163 (65%), Gaps = 3/163 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
F D RG+F ++++ K+ LG + F QDN S S G +RGLH+Q P +Q KLVRC
Sbjct: 24 FNDERGYFYESWNEKIFNSILGKEVRFKQDNISHSIK-GVLRGLHYQLKPESQGKLVRCS 82
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
G IFD+AVDIR+ S T+G W+S E+S+ N Q++IP GFAHGF+T+ + EV YK T F
Sbjct: 83 YGSIFDVAVDIRKESKTFGKWLSAELSSENKKQLWIPVGFAHGFLTISDHAEVNYKATGF 142
Query: 133 YSVEHDSGVAWQDKSIDITWPLLD-TILPSVSEKDQNLPFLNQ 174
++ + + + W DK + ITWP+ + P ++EKD + PFL +
Sbjct: 143 WNKDCEHSIRWNDKDLKITWPIKEFGFEPVINEKDASAPFLKE 185
>gi|298481049|ref|ZP_06999243.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D22]
gi|298272623|gb|EFI14190.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D22]
Length = 193
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 114/185 (61%), Gaps = 10/185 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V +++ + F+D+RG+F +++S + ++ + FVQDN S S G +RG HFQ P
Sbjct: 7 KIDGVVVIEPKVFKDTRGYFLESFSLREFEKKVRKISFVQDNESMS-SYGVMRGFHFQFP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY Q+KLVRC+ GR+ D+AVDIR+ S TYG V++E+S N Q ++P GFAHGF L
Sbjct: 66 PYTQSKLVRCVKGRVLDVAVDIRKGSSTYGQHVAVELSEENHHQFFVPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS----VSEKDQNLPFLNQIDS 177
YK +FY+ + D G++ +D+ + I W ++PS +SEKD FL DS
Sbjct: 126 IAVFQYKCDNFYNPQADGGISIKDEGLGINW-----MIPSESIILSEKDTRHTFLKNFDS 180
Query: 178 PFEYD 182
PF D
Sbjct: 181 PFSID 185
>gi|116491430|ref|YP_810974.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oenococcus oeni PSU-1]
gi|290891010|ref|ZP_06554074.1| hypothetical protein AWRIB429_1464 [Oenococcus oeni AWRIB429]
gi|116092155|gb|ABJ57309.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oenococcus oeni PSU-1]
gi|290479409|gb|EFD88069.1| hypothetical protein AWRIB429_1464 [Oenococcus oeni AWRIB429]
Length = 189
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 112/180 (62%), Gaps = 1/180 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V++++T F D RG+F++T++ + ++LGL+ F QDN S S + G +RG+H+Q
Sbjct: 8 SLQDVKLIETEVFGDKRGFFTETWTKEKFEKLGLKFDFTQDNQSLSAEAGVLRGMHYQLA 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ K+VR + G ++D VD+R+ SPTYG W +S N Q+ +P GFAHGF+TL
Sbjct: 68 PYAQTKIVRVVTGVVWDCLVDMRKGSPTYGKWEGYILSEYNHRQLLVPKGFAHGFVTLTP 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N +YKV +Y+ + D G+A+ D + I WP + +S+KD P L ++ F Y
Sbjct: 128 NVNFVYKVDGYYAPKADRGIAFDDPDVGIQWP-TNVEHAIMSDKDLKHPLLKDAENNFVY 186
>gi|159896798|ref|YP_001543045.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Herpetosiphon aurantiacus
ATCC 23779]
gi|159889837|gb|ABX02917.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Herpetosiphon aurantiacus
ATCC 23779]
Length = 188
Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/183 (44%), Positives = 111/183 (60%), Gaps = 6/183 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V I+K F D RG+F +TY +LGL FVQDNHS S G +RGLH+Q
Sbjct: 10 LDGVVIIKPSVFADERGFFLETYHQIKFADLGLPTDFVQDNHSRS-KQGVLRGLHYQDER 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AKLVRC G IFD+AVD+R SPT+G WV +E+SA+N LQ IP+GF HGF+ L
Sbjct: 69 QPMAKLVRCSVGSIFDVAVDLRVGSPTFGKWVGVELSADNFLQFLIPSGFGHGFVVLSEF 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ-NLPFLNQIDSP-FE 180
EV Y+ T Y+ E + V W D I I WP+ + P++S +DQ + + +++P F
Sbjct: 129 AEVQYRCTGLYAPETEGAVRWNDPQIGIEWPISE---PTLSGRDQAAMSLADYLENPAFR 185
Query: 181 YDG 183
Y G
Sbjct: 186 YRG 188
>gi|317048788|ref|YP_004116436.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pantoea sp. At-9b]
gi|316950405|gb|ADU69880.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pantoea sp. At-9b]
Length = 182
Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 105/161 (65%), Gaps = 2/161 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+I++ F D RG+F +T+ K +EL FVQDNHS S G +RGLH+Q Q
Sbjct: 11 VKIIEPAVFGDERGFFMETWQQKKFEELVSPRTFVQDNHSKS-SKGILRGLHYQTV-NTQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR +AG +FD+AVD+RR+SPT+G WV + +SA N Q+++P GFAHGF + E
Sbjct: 69 GKLVRVVAGEVFDVAVDMRRSSPTFGKWVGVLLSAENKRQLWVPEGFAHGFYVTSDSAEF 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK TD+Y+ +H+ + W D+ ++I WP+ PS+S KD
Sbjct: 129 VYKCTDYYNPQHEHSLLWNDRELNINWPINSDNPPSLSAKD 169
>gi|262066767|ref|ZP_06026379.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium periodonticum
ATCC 33693]
gi|291379570|gb|EFE87088.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium periodonticum
ATCC 33693]
Length = 187
Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 112/174 (64%), Gaps = 6/174 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + IL+ R FEDSRG+F ++Y+ KE+G+ ++FVQDN S S +RGLHFQ+
Sbjct: 8 IKDLLILEPRVFEDSRGFFMESYNYNTFKEIGIDNIFVQDNISKS-SKAVLRGLHFQKDE 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQAKLV + G + D+ VD+R NS T+G + ++E++ N ++IP GFAH F+TLE +
Sbjct: 67 YAQAKLVYVLRGAVLDVTVDLRENSETFGKYEAVELNEKNKRMLFIPRGFAHAFLTLEND 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS----VSEKD-QNLPF 171
TE IYK +FY+ + + G+ W D ++I W L + +SEKD +N+ F
Sbjct: 127 TEFIYKCDNFYNPKSEVGIVWNDVDLNINWNLEKYNIKEEELIISEKDKKNITF 180
>gi|227543972|ref|ZP_03974021.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus reuteri
CF48-3A]
gi|300909571|ref|ZP_07127032.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus reuteri SD2112]
gi|227186033|gb|EEI66104.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus reuteri
CF48-3A]
gi|300893436|gb|EFK86795.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus reuteri SD2112]
Length = 193
Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 108/182 (59%), Gaps = 5/182 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V+I+ F D RG+F +TYS + K G+ F+QDN S S G +RGLHFQR
Sbjct: 11 LQDVKIITPAVFGDHRGFFEETYSDRDFKAAGIDFNFIQDNQSLSTHAGVLRGLHFQRGK 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KL+R + G + D+ VD+R+ SPTY W +SA+N Q+ +P GFAHGF+TL N
Sbjct: 71 AAQTKLIRVVTGAVLDVIVDLRKGSPTYKQWEGYILSASNHRQLLVPRGFAHGFLTLTDN 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQI--DSPF 179
+YK ++Y E D G++++ ++I WP+ D + SEKD P L + D+PF
Sbjct: 131 VNFVYKCDNYYDAEADGGISFKTPELNIDWPIEFDKAI--TSEKDAAQPTLTEFEKDNPF 188
Query: 180 EY 181
Y
Sbjct: 189 VY 190
>gi|218248087|ref|YP_002373458.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 8801]
gi|218168565|gb|ACK67302.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 8801]
Length = 176
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 106/167 (63%), Gaps = 3/167 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+N +++ ++ ED RG+F++++ K + GL VQ N SF+ GT+RG+H+Q
Sbjct: 7 KLNGAYLIELKRLEDERGFFARSWCQKEFLDYGLDANLVQCNISFNLKKGTLRGMHYQIA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY + KL+RC G I+D+ +D+ S ++ W+ +E+SA N L IYIP GFAHGF TLE
Sbjct: 67 PYEEVKLLRCTQGAIYDVIIDLNLESSSFKQWIGVELSAENRLMIYIPKGFAHGFQTLED 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+TEV Y++++FY E GV W D + I WP+ D P +SEKD+
Sbjct: 127 HTEVFYQMSEFYHPECARGVRWNDPTFAIEWPIED---PIISEKDRQ 170
>gi|298353050|gb|ADI77028.1| RmlC [Escherichia coli]
Length = 182
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 109/162 (67%), Gaps = 5/162 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
++ F DSRG+F ++++ + + + + VF QDN S S G +RGLHFQ P QA
Sbjct: 13 VITPEVFADSRGYFFESFNYRDFQRIINREIVFCQDNQSLSHK-GVVRGLHFQVNPKEQA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVRCI G ++D+ VD+R+NSP+Y CW + +S++N Q++IP G AHGF++LE NTE++
Sbjct: 72 KLVRCINGSVYDVIVDLRKNSPSYKCWFGILLSSDNKKQLWIPEGCAHGFISLEDNTELL 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YK T+FYS +H+ + W D + I+WP I +S+KD+N
Sbjct: 132 YKTTEFYSPDHERCIIWNDPDLGISWPEYSYI---ISDKDKN 170
>gi|323483216|ref|ZP_08088607.1| hypothetical protein HMPREF9474_00356 [Clostridium symbiosum
WAL-14163]
gi|323691340|ref|ZP_08105615.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium symbiosum
WAL-14673]
gi|323403489|gb|EGA95796.1| hypothetical protein HMPREF9474_00356 [Clostridium symbiosum
WAL-14163]
gi|323504680|gb|EGB20467.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium symbiosum
WAL-14673]
Length = 186
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + +++ F+D RG+F +TY+ +E GL VFVQDN S S G +RGLH+Q+
Sbjct: 10 DIEGLYVIEPTVFKDERGYFVETYNQNDFREAGLDMVFVQDNQSMSVK-GVLRGLHYQKE 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R S TYG W + ISA N Q YIP GFAHGF+ L
Sbjct: 69 -FPQGKLVRAVRGEVFDVAVDLRTGSRTYGKWFGVVISAENKKQFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E YK TDFY + G+A+ D I I WP+ + + +SEKD+
Sbjct: 128 EAEFAYKCTDFYHPGDEGGLAYNDPEIGIEWPVTEGMELIISEKDKK 174
>gi|237739562|ref|ZP_04570043.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 2_1_31]
gi|229423170|gb|EEO38217.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 2_1_31]
Length = 187
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 114/174 (65%), Gaps = 6/174 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + +++ + FEDSRG+F ++Y+ KELG+ +VFVQDN S S G +RGLHFQR
Sbjct: 8 IKNLLLIEPKIFEDSRGFFMESYNYNTFKELGIDNVFVQDNISKS-SKGVLRGLHFQRDE 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQAKLV + G + DI VD+R++S T+G + ++E++ N ++IP GFAHGF+TLE N
Sbjct: 67 YAQAKLVYVLRGAVLDITVDLRKDSETFGRYEAVELNDKNKRMLFIPRGFAHGFLTLEDN 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS----VSEKD-QNLPF 171
TE +YK +FY+ + + G+ W D ++ W L + +SEKD +N+ F
Sbjct: 127 TEFVYKCDNFYNPKSEVGIIWNDTDLNTDWNLDKYNIKEEELIISEKDKKNITF 180
>gi|312891211|ref|ZP_07750732.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mucilaginibacter paludis DSM
18603]
gi|311296290|gb|EFQ73438.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mucilaginibacter paludis DSM
18603]
Length = 182
Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 109/179 (60%), Gaps = 6/179 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ R F D RG+F ++Y+ + E G+ FVQDN S S GT+RGLH Q PP
Sbjct: 8 IEGLLIIEPRVFPDDRGYFYESYNQQKYIEAGINVNFVQDNQSSS-SKGTLRGLHAQAPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q KLVR I G + D+AVDIR+ SPTYG ++ +++SA N LQ++IP GF HGF LE +
Sbjct: 67 YGQDKLVRVIKGSVIDVAVDIRKGSPTYGQYLKIKLSAQNNLQLWIPQGFLHGFFALEDD 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ YK+T+FY + GV D + I W P+ D L S KD+ LP SPF
Sbjct: 127 SIFAYKITNFYDKASEIGVKITDPELGIDWGFPISDITL---SPKDEALPDFKSFVSPF 182
>gi|93115472|gb|ABE98432.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli]
Length = 177
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 108/165 (65%), Gaps = 3/165 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + +KFEDSRG+F ++++ +L ++ +G + +FVQDN S+S +RGLH+Q
Sbjct: 8 IPEVLIFEPKKFEDSRGYFFESFNQRLFEDAVGKETLFVQDNQSYS-SKNVLRGLHYQSE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVRCI G +FD+AVDIR+ S +YG WV + +S +N Q++IP GFAHGF+
Sbjct: 67 PYAQGKLVRCIMGEVFDVAVDIRKESESYGQWVGVFLSEDNNRQLWIPEGFAHGFLVKSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK T+FY+ ++ + W + I WPL D L +SEKD
Sbjct: 127 KAIFAYKCTNFYNPSAENTIRWDSPDLAIEWPLDDEDL-LISEKD 170
>gi|108805902|ref|YP_645839.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rubrobacter xylanophilus DSM
9941]
gi|108767145|gb|ABG06027.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rubrobacter xylanophilus DSM
9941]
Length = 183
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 106/170 (62%), Gaps = 5/170 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +++ + F D RG+F ++++ + +E GL + FVQDN S S G +RGLHFQ P Q
Sbjct: 11 VLVVEPQVFGDERGFFMESFNGRRYREAGLPERFVQDNLSLS-RRGVLRGLHFQHP-RGQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV + G +FD+AVD+RR SPT+G WV L +S N Q+YIP GFAHGF+ L
Sbjct: 69 GKLVSVLRGEVFDVAVDVRRGSPTFGRWVGLSLSEENRRQLYIPPGFAHGFVVLSEAALF 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK T++Y+ E + V W D I I WP+ + +L SEKD+ P L ++
Sbjct: 129 FYKCTEYYAPECERTVLWSDPEIGIGWPVEEPVL---SEKDRKAPALREM 175
>gi|254711650|ref|ZP_05173461.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella pinnipedialis B2/94]
gi|256029716|ref|ZP_05443330.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella pinnipedialis
M292/94/1]
gi|261319274|ref|ZP_05958471.1| dTDP-4-dehydrorhamnose reductase [Brucella pinnipedialis B2/94]
gi|265986727|ref|ZP_06099284.1| dTDP-4-dehydrorhamnose reductase [Brucella pinnipedialis M292/94/1]
gi|261298497|gb|EEY01994.1| dTDP-4-dehydrorhamnose reductase [Brucella pinnipedialis B2/94]
gi|264658924|gb|EEZ29185.1| dTDP-4-dehydrorhamnose reductase [Brucella pinnipedialis M292/94/1]
Length = 174
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 109/172 (63%), Gaps = 3/172 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NIN L+ + +D RGWF++ Y E L+ F Q + SFS + GT+RGLH+Q
Sbjct: 6 LNINGAWSLEPERLKDERGWFARVYCEAAFAERKLETHFPQHSLSFSREKGTLRGLHYQN 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+++ KLV C+ G ++D+ VD+R +SPTY W +E+SA NG+Q+YIP G AHGF TL
Sbjct: 66 EPHSETKLVTCLQGIVWDVLVDLRPHSPTYRRWAGVELSAENGVQLYIPEGCAHGFQTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ + Y ++ Y+ +H +G+ + D ++DI WP ++ +S+KD PFL
Sbjct: 126 DDVLIRYMISKPYAPDHAAGIRYDDPALDIPWPEKPSV---ISQKDLGWPFL 174
>gi|298527744|ref|ZP_07015148.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511396|gb|EFI35298.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 183
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 109/171 (63%), Gaps = 3/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+N +++ + D RG+FS+T+ + +++GL Q N +F+ GT+RG+HFQ P
Sbjct: 8 LNGAYLIRLERHNDDRGFFSRTFCRREFEKMGLNSEISQCNLAFNNKAGTLRGMHFQTQP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y++ KLV C++G +FD+ +D+R S TY CW ++SA+N +Y+P GFAHG+ TL N
Sbjct: 68 YSEVKLVGCVSGSVFDVIIDLREESTTYSCWFGTKLSADNLEMLYVPKGFAHGYQTLVDN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
V Y V++ Y E+++GV W D ++I+WPL + +VS+KD P LN
Sbjct: 128 AAVSYMVSESYCPEYENGVRWNDPVLNISWPLE---VITVSKKDSAWPLLN 175
>gi|298485660|ref|ZP_07003739.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298159686|gb|EFI00728.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 181
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 112/170 (65%), Gaps = 7/170 (4%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + + F D RG+F ++++ K +E+ G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVIVFEPKVFGDDRGFFFESFNQKAFEEVVGRPVTFVQDNHSRSVK-GVLRGLHYQ 64
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
+ P Q KLVR AG +FD+AVD+R++SPT+G WV L ++A N Q++IP GFAHGF+
Sbjct: 65 IQQP--QGKLVRVTAGEVFDVAVDLRKSSPTFGKWVGLHLTAENKKQLWIPEGFAHGFVV 122
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
L + E +YK TD+++ EH+ +AW D ++ I WP + PS+S KDQ
Sbjct: 123 LSESAEFLYKTTDYWAPEHERSLAWNDVTVGIDWPFSEA--PSLSAKDQK 170
>gi|327404038|ref|YP_004344876.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fluviicola taffensis DSM
16823]
gi|327319546|gb|AEA44038.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fluviicola taffensis DSM
16823]
Length = 182
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 79/176 (44%), Positives = 112/176 (63%), Gaps = 5/176 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V +++ F D RG+F +++ + E +G + FVQDN S S G +RGLHFQ PP+A
Sbjct: 11 VLLIQPTIFGDDRGYFFESFHQQKFNEFIGAEINFVQDNESKSAK-GVLRGLHFQAPPHA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G + D+A+DIR+NSPTYG VS +SA N +Q YIP GFAHGF+TLE +T
Sbjct: 70 QGKLVRVVQGSVLDVALDIRKNSPTYGQHVSFVLSAENKMQAYIPAGFAHGFVTLEKDTI 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
YK T++Y+ + + W D ++ I W ++ IL S+KD+ L +SPFE
Sbjct: 130 FQYKCTNWYNPSSEGSILWNDPALTIQWQEMNPIL---SDKDKLGILLADFNSPFE 182
>gi|303248974|ref|ZP_07335220.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio fructosovorans
JJ]
gi|302489623|gb|EFL49561.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio fructosovorans
JJ]
Length = 193
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKL 68
+K + F D+RG+F +TYS GL FVQDNH+ S G +RGLHFQRPP QAKL
Sbjct: 14 IKPKVFGDNRGFFLETYSRAAFAAAGLDYDFVQDNHARSGPKGVLRGLHFQRPPSTQAKL 73
Query: 69 VRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128
V + G + D+ VD+R SPTY W +E++ +N +++ +P GFAHG++TL N E +YK
Sbjct: 74 VWVVRGAVLDVVVDLRVGSPTYKKWFGIELTEDNFMRLMVPRGFAHGYVTLTENAEFMYK 133
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
V Y D+G+AW D I I WP+ + IL SEKD P L + SPF Y G
Sbjct: 134 VDAPYVPADDAGIAWNDPEIGIDWPVAEPIL---SEKDARQPTLAALGSPFIYQG 185
>gi|237743314|ref|ZP_04573795.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 7_1]
gi|229433093|gb|EEO43305.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 7_1]
Length = 164
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 6/154 (3%)
Query: 23 QTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVD 82
++Y+ KELG++++FVQDNHS S G +RGLHFQ+ Y+QAKLVR + G + DIA+D
Sbjct: 2 ESYNYNTFKELGIENIFVQDNHSKS-SKGVLRGLHFQKGEYSQAKLVRVLKGAVLDIAID 60
Query: 83 IRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVA 142
+R+NS T+G +V++E+S N +IP FAHGF+TLE NTE YK +FY+ + ++G+
Sbjct: 61 LRKNSKTFGKYVTVELSEKNKKMFFIPRNFAHGFLTLEDNTEFFYKCDNFYNPKSEAGIM 120
Query: 143 WQDKSIDITWPLLDTILPS----VSEKD-QNLPF 171
W DK ++I W + +SEKD +N+ F
Sbjct: 121 WNDKDLNIEWNFKKYGINENELIISEKDKKNMSF 154
>gi|313202900|ref|YP_004041557.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Paludibacter propionicigenes
WB4]
gi|312442216|gb|ADQ78572.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paludibacter propionicigenes
WB4]
Length = 190
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 115/182 (63%), Gaps = 6/182 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I++ F D RG+F +++S K +E + VFVQDN S S G +RGLH+Q+P
Sbjct: 7 KLEGVCIIEPVVFADERGYFFESFSQKEFEEKVCKTVFVQDNESKS-TYGVLRGLHYQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ+KLVR + G++ D+A+DIRR SPT+G V++E+S N Q ++P GFAHGF+ L
Sbjct: 66 PYAQSKLVRVVKGKVLDVALDIRRGSPTFGQHVAVELSEENKRQFFVPRGFAHGFVVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ YK +FY+ +++ +AW D + I W P D IL SEKD++ L ++ F
Sbjct: 126 DVIFQYKCDNFYAPKNEGALAWDDADLSIDWKIPSGDVIL---SEKDKHHSSLKEMKLVF 182
Query: 180 EY 181
+Y
Sbjct: 183 DY 184
>gi|90962542|ref|YP_536458.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus salivarius
UCC118]
gi|90821736|gb|ABE00375.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus salivarius
UCC118]
Length = 193
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 111/182 (60%), Gaps = 5/182 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V+++ F D+RG+F+++YS + K G+ F+QDNHS S G +RGLHFQR
Sbjct: 11 LQDVKLITPAVFGDNRGFFTESYSDRDFKAAGIDFDFIQDNHSLSTQAGVLRGLHFQRGK 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KL+R G + D+ VD+R+ SPTY W +S +N Q+ +P G+AHGF+TL N
Sbjct: 71 AAQTKLIRVATGAVLDVIVDLRKGSPTYKQWEGYILSESNHRQLLVPKGYAHGFVTLTDN 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQID--SPF 179
+YK ++Y E D G++++ ++I WP+ LD + SEKD N P L + + +PF
Sbjct: 131 VNFLYKCDNYYDAEADGGISFKTPELNIDWPIDLDKAI--TSEKDANQPTLTEFEKGNPF 188
Query: 180 EY 181
Y
Sbjct: 189 VY 190
>gi|258517208|ref|YP_003193430.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfotomaculum acetoxidans
DSM 771]
gi|257780913|gb|ACV64807.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfotomaculum acetoxidans
DSM 771]
Length = 182
Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 102/169 (60%), Gaps = 6/169 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ F D RG+F +TY K E GL FVQDN S S G +RGLHFQR
Sbjct: 10 GIQGLYIIEPMIFGDHRGYFMETYHLKEFSEAGLNMAFVQDNQSKS-KKGVLRGLHFQRK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR I G +FD+AVD+R +S TYG W + +S N Q YIP FAHGF+ L
Sbjct: 69 -YPQGKLVRVIKGEVFDVAVDLRMDSKTYGKWFGVILSEENKKQFYIPESFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQN 168
E +YK TD+Y E + G+ W D +I I WPL +D I+ +SEKDQ
Sbjct: 128 EAEFVYKCTDYYHPEDEDGILWNDPAIGIAWPLDRIDDII--LSEKDQK 174
>gi|33865182|ref|NP_896741.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. WH 8102]
gi|33638866|emb|CAE07163.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. WH 8102]
Length = 195
Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 106/173 (61%), Gaps = 4/173 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
++ + F D RGWF ++++ + E +G VF QDNHS S G +RGLH+Q P QA
Sbjct: 19 LISPQAFGDERGWFFESWNQRRFDEAVGEAVVFSQDNHSRSVQ-GVLRGLHYQLEPEPQA 77
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR G+IFD+AVDIR+ S T+G WV ++SA N Q+++P GFAHGF+TL EV
Sbjct: 78 KLVRASVGKIFDVAVDIRQGSATFGQWVGAQLSAENKQQLWVPEGFAHGFLTLSAVAEVQ 137
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWP--LLDTILPSVSEKDQNLPFLNQIDS 177
YK F++ + + W D SI+I WP LL S+S KD P L+Q +
Sbjct: 138 YKARGFWNKSCERAIRWDDASINIRWPLDLLGGAEVSLSGKDAEAPTLDQAKA 190
>gi|253581530|ref|ZP_04858755.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium varium ATCC
27725]
gi|251836600|gb|EES65135.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium varium ATCC
27725]
Length = 203
Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 109/169 (64%), Gaps = 6/169 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + IL+ F D RG+F +TY+ K +E+G+ + FVQDNHS S G +RGLHFQ
Sbjct: 11 IEGLYILEPTVFGDERGFFLETYNKKEFEEIGIFEEFVQDNHSKS-KKGVLRGLHFQ-TK 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
++Q KLVR I G ++D+AVDIR+ SPTYG W +E++A N +IP GFAHGF+TLE
Sbjct: 69 HSQGKLVRVIKGAVYDVAVDIRKGSPTYGKWYGIELNAVNKKMFFIPKGFAHGFLTLEDE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS----VSEKDQ 167
TE YK TD Y E+DSG+ W DK I+I W L +SEKD+
Sbjct: 129 TEFQYKCTDLYHPEYDSGIMWNDKDININWNFEKYGLKEENMVLSEKDK 177
>gi|310780093|ref|YP_003968425.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ilyobacter polytropus DSM
2926]
gi|309749416|gb|ADO84077.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ilyobacter polytropus DSM
2926]
Length = 190
Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 102/159 (64%), Gaps = 6/159 (3%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F +TY+ + ++LG FVQDNHS S G +RGLHFQ+ ++Q KL+R G
Sbjct: 24 DQRGFFMETYNKRYFEKLGFNLEFVQDNHSKS-KKGVLRGLHFQKE-HSQGKLIRVTRGS 81
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
I+D+AVD+R+ SPT+G W L +S N YIP GFAHGF+TL+ +TE+ YK TDFY
Sbjct: 82 IWDVAVDLRKKSPTFGVWHGLILSQENKKLFYIPEGFAHGFLTLDDDTEIQYKCTDFYYP 141
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPS----VSEKDQNLP 170
E DSG+ W D I I WP + L +SE+D + P
Sbjct: 142 EFDSGINWDDPDIGIKWPFKEFGLEEENLILSERDMDQP 180
>gi|310644323|ref|YP_003949082.1| dtdp-4-dehydrorhamnose 3,5-epimerase like protein [Paenibacillus
polymyxa SC2]
gi|309249274|gb|ADO58841.1| dTDP-4-dehydrorhamnose 3,5-epimerase like protein [Paenibacillus
polymyxa SC2]
Length = 177
Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 98/153 (64%), Gaps = 2/153 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++ + K GL+ FVQ N S++ GT+RGLH+Q PPY + K+VRC G
Sbjct: 21 DVRGHFARAWCQDEFKSHGLECSFVQCNISYNEKKGTLRGLHYQAPPYEEVKIVRCTKGS 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
I+D+ VD+R +SPTY W+S+E+S N +YIP GFAHG+ TL NTEV Y+V+ Y
Sbjct: 81 IYDVIVDLRPDSPTYKQWLSIELSDKNYKMLYIPKGFAHGYQTLSDNTEVFYQVSQMYKA 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E+ GV W D +I WP + + +SEKDQN
Sbjct: 141 EYARGVKWDDPEFNIEWPEEEKRI--MSEKDQN 171
>gi|34499468|ref|NP_903683.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Chromobacterium violaceum
ATCC 12472]
gi|34105320|gb|AAQ61675.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Chromobacterium violaceum
ATCC 12472]
Length = 180
Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 111/168 (66%), Gaps = 4/168 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ V+I++ + F D RG+F ++++ + ++ +G FVQDNHS S +RGLH+Q
Sbjct: 7 EISAVKIIEPQIFGDERGFFFESFNQQRFEQAVGHAVDFVQDNHSRS-GKNVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ Q KLVR ++G +FD+AVDIR S T+G WV +E+SA N Q++IP GFAHGF+TL
Sbjct: 66 DPHPQGKLVRVVSGAVFDVAVDIRPGSETFGQWVGVELSAANKRQLWIPAGFAHGFLTLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+ E +YK TD++ E + +AW D + I WPL D P++S KDQ
Sbjct: 126 DDVEFLYKTTDYWHPELERTLAWDDPDLAIAWPLSDA--PTLSAKDQT 171
>gi|228473995|ref|ZP_04058736.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga gingivalis
ATCC 33624]
gi|228274509|gb|EEK13350.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga gingivalis
ATCC 33624]
Length = 188
Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 107/175 (61%), Gaps = 6/175 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ + F D RG+F +++S + E FVQDN S S G +RGLHFQRPP
Sbjct: 8 IEGLVIIEPKVFSDERGYFFESFSQQKFVEEVCNTTFVQDNESKS-SYGVLRGLHFQRPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLVR + G ++D+AVDIRR SPT+G ++ +E++ N Q +IP GFAHGF+ L
Sbjct: 67 YAQSKLVRVVKGIVWDVAVDIRRGSPTFGQYIGVELTEQNKRQFFIPRGFAHGFVVLSPE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQI 175
YK FY+ H+ V W D +I I W P D IL S+KDQ P L ++
Sbjct: 127 AIFQYKCDSFYAPTHEGSVLWNDPTIGIDWKIPHNDIIL---SQKDQQGPLLQEV 178
>gi|212634444|ref|YP_002310969.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella piezotolerans WP3]
gi|212555928|gb|ACJ28382.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella piezotolerans WP3]
Length = 182
Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 81/171 (47%), Positives = 109/171 (63%), Gaps = 7/171 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSK----LLKELGL-QDVFVQDNHSFSFDCGTIRGLH 57
I V +++ + F D RG+F +TY L E GL FVQ+N S S +RGLH
Sbjct: 8 IADVLLIEPKVFGDERGFFMETYRESEFKILFAEAGLIAPHFVQENMSRSAKH-VLRGLH 66
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
FQ+ Q KL+R ++G IFD+AVDIR++S T+G WV +SANN LQ+YIP GFAHGF+
Sbjct: 67 FQKSK-PQGKLIRVVSGEIFDVAVDIRQDSATFGQWVGQVLSANNRLQMYIPPGFAHGFL 125
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
TL ++IYK TD+Y E + VAW D +I I WPL ++LP +S+KD
Sbjct: 126 TLSEYADIIYKCTDYYVPEDEGHVAWDDANIGIDWPLSKSVLPILSDKDSG 176
>gi|220909658|ref|YP_002484969.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 7425]
gi|219866269|gb|ACL46608.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 7425]
Length = 181
Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 117/179 (65%), Gaps = 13/179 (7%)
Query: 1 MNINP-----VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIR 54
M I P V IL+ + + D RGWF ++++++ +E GL FVQDNHS+S +R
Sbjct: 1 MKITPTEIPEVLILEPQVYGDQRGWFYESFNTRTFQEKTGLAVDFVQDNHSYS-QHHVLR 59
Query: 55 GLHFQ-RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFA 113
GLH+Q + P Q KLVR +AG +FD+AVD+R++S T+G WV +E+S N Q++IP+GFA
Sbjct: 60 GLHYQIQQP--QGKLVRAVAGMVFDVAVDLRKSSRTFGQWVGVELSGENHRQLWIPSGFA 117
Query: 114 HGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ-NLPF 171
HGF+ L EV+YK TD+Y+ ++D + W D + I WPL T + +S KDQ LP+
Sbjct: 118 HGFLVLSETAEVLYKTTDYYAPQYDRCLLWNDPDLAIAWPLTGTAI--LSAKDQAGLPW 174
>gi|296114300|ref|ZP_06832954.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gluconacetobacter hansenii
ATCC 23769]
gi|295979061|gb|EFG85785.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gluconacetobacter hansenii
ATCC 23769]
Length = 186
Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 105/172 (61%), Gaps = 5/172 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V ++ +F D+RG+FS+TY+ + + G+ FVQDN S S G +RGLH Q
Sbjct: 6 LAIPDVILVTPARFGDTRGFFSETYNLHRMADAGIHAPFVQDNQSLSRHKGVVRGLHCQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC G I+D+AVD R SPTYG WV+ E+S +N Q+++P GF HGF+T+
Sbjct: 66 APHAQGKLVRCTRGAIWDVAVDARMGSPTYGQWVAAELSEDNWSQLWLPPGFLHGFVTMS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL--DTILPSVSEKDQNLP 170
NTEV YK T Y + V W + I WP+ D IL S+KD+ P
Sbjct: 126 DNTEVQYKCTSLYDKASERAVIWNCPELKIDWPIAQEDAIL---SDKDKVAP 174
>gi|189502419|ref|YP_001958136.1| hypothetical protein Aasi_1062 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497860|gb|ACE06407.1| hypothetical protein Aasi_1062 [Candidatus Amoebophilus asiaticus
5a2]
Length = 186
Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 104/169 (61%), Gaps = 3/169 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F + Y + L +LG+ + FVQ+N SFS GTIRGLH+Q PYAQAKL+R I G
Sbjct: 21 DQRGYFMECYHQEKLTQLGIHNQFVQENQSFS-KKGTIRGLHYQLNPYAQAKLIRVIDGA 79
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
I+DI VD+R+ S T+G W + +SA N Q+ IP G+AHGF + +IYK +FY
Sbjct: 80 IWDIIVDLRQGSTTFGQWEGIMLSAENNKQLLIPRGYAHGFAVMSQEATIIYKCDNFYHP 139
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGL 184
E ++G+ W D + I W + P +S +DQ LP L + F+Y L
Sbjct: 140 EAEAGIHWLDPELAIDWKI--NAPPLLSARDQQLPCLEKAIINFDYQSL 186
>gi|254374810|ref|ZP_04990291.1| hypothetical protein FTDG_00986 [Francisella novicida GA99-3548]
gi|151572529|gb|EDN38183.1| hypothetical protein FTDG_00986 [Francisella novicida GA99-3548]
Length = 193
Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 109/167 (65%), Gaps = 3/167 (1%)
Query: 16 DSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D RG+F +++ +L LG + F QDN S S G IRGLH+Q PPYAQ KLVR I G
Sbjct: 21 DERGYFIESFREDRLFDFLGYKINFCQDNESKS-SYGVIRGLHYQLPPYAQTKLVRVIQG 79
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
++ D+AVDIR+ SPT+G V +E+SA+N Q+ +P GFAHGF+ LE +T YKV ++YS
Sbjct: 80 KVLDVAVDIRKGSPTFGQHVVVELSAHNKRQLLVPRGFAHGFVVLENDTIFSYKVDNYYS 139
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
E D G+A+ DK I I W L L +S KD+ P L++ D FE+
Sbjct: 140 PECDRGIAFDDKDIAIDWQLPMGSL-KLSTKDKTQPKLSETDDLFEF 185
>gi|119485672|ref|ZP_01619947.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lyngbya sp. PCC 8106]
gi|119456997|gb|EAW38124.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lyngbya sp. PCC 8106]
Length = 182
Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 112/182 (61%), Gaps = 9/182 (4%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSK-LLKELGLQDVFVQDNHSFSFDCGTIR 54
MN+ P +I L+ + F D RG+F ++++ K + G+ FVQDNHS S G +R
Sbjct: 1 MNVIPTKIPEVLILEPKVFGDERGFFFESFNQKSFADQTGVTTEFVQDNHSRSRQ-GVLR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
GLH+Q Q KL+R +AG IFD+AVDIR++SPT+G WV ISA N Q ++P FAH
Sbjct: 60 GLHYQTE-QVQGKLLRVVAGEIFDVAVDIRKSSPTFGQWVGCIISAENKRQFWVPPKFAH 118
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
GF+ L EV+YK TD+Y+ +H+ + W D + I WP +D I P +S KDQ+ L
Sbjct: 119 GFLVLSEVAEVLYKTTDYYAPQHERSILWNDPDLGIEWP-VDGITPVLSAKDQDGKTLKT 177
Query: 175 ID 176
D
Sbjct: 178 AD 179
>gi|330962124|gb|EGH62384.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 181
Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 109/172 (63%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ R F D RG+F +++++K +E GL FVQDNHS S G +RGLH+Q A
Sbjct: 11 VLILEPRVFGDERGFFYESFNAKAFQEATGLTRQFVQDNHSRS-QQGVLRGLHYQ-IENA 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR G++ D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L + E
Sbjct: 69 QGKLVRVTVGKVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLSEHAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD+Y+ + +AW D + I W L PS+S KDQ L + D
Sbjct: 129 FLYKTTDYYTPSAERCIAWDDPDLAIDWQLDGQ--PSLSAKDQQGKRLKEAD 178
>gi|77920189|ref|YP_358004.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pelobacter carbinolicus DSM
2380]
gi|77546272|gb|ABA89834.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pelobacter carbinolicus DSM
2380]
Length = 168
Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 110/170 (64%), Gaps = 5/170 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+++ + F D RG+F ++++ K + GL FVQDNHS S G +RGLH+Q QA
Sbjct: 1 MIEPKIFGDQRGFFFESFNQKQWQNTTGLSTRFVQDNHSRS-ARGVLRGLHYQ-IEQVQA 58
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR I G +FD+AVDIRR+SPT+G WV + +SA N Q++IP GFAHGF+ L E +
Sbjct: 59 KLVRVIVGEVFDVAVDIRRHSPTFGKWVGVRLSAENKRQLWIPEGFAHGFLVLSEVAEFL 118
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YK TD+Y+ EH+ + W D + I WP + P++SEKD+ LN+ +
Sbjct: 119 YKTTDYYAPEHERAIIWNDPDLAIHWPTDEE--PTLSEKDKRALPLNEAE 166
>gi|170019636|ref|YP_001724590.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli ATCC 8739]
gi|169754564|gb|ACA77263.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli ATCC 8739]
Length = 177
Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 108/165 (65%), Gaps = 3/165 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + +KFEDSRG+F ++++ +L ++ +G + +FVQDN S+S +RGLH+Q
Sbjct: 8 IPEVLIFEPKKFEDSRGYFFESFNQRLFEDAVGKEILFVQDNQSYS-SKNVLRGLHYQSE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVRCI G +FD+AVDIR+ S +YG WV + +S +N Q++IP GFAHGF+
Sbjct: 67 PYAQGKLVRCIMGEVFDVAVDIRKESESYGQWVGVFLSEDNNRQLWIPEGFAHGFLVKSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK T+FY+ ++ + W + I WPL D L +SEKD
Sbjct: 127 KAIFAYKCTNFYNPSAENTIRWDSPDLAIEWPLDDEDL-LISEKD 170
>gi|320162336|ref|YP_004175561.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anaerolinea thermophila
UNI-1]
gi|319996190|dbj|BAJ64961.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anaerolinea thermophila
UNI-1]
Length = 182
Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 111/175 (63%), Gaps = 2/175 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V IL+ + F D+RG+F +T+ + LGL FVQDNHS S G +RGLH+Q
Sbjct: 8 IPEVMILEPQVFRDARGFFMETFHEEKFAALGLPTRFVQDNHSAS-RRGVLRGLHYQIQ- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLVR I+G +FD+AVD+RR+SPT+G WV +SA N ++IP GFAHGF+ L
Sbjct: 66 QAQGKLVRVISGEVFDVAVDLRRSSPTFGQWVGEVLSAENHRMMWIPAGFAHGFLVLSDW 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
EV+YK TDFY+ + + + W D ++ + W + P +SEKDQ L+Q ++
Sbjct: 126 AEVLYKTTDFYAPQWERTLLWNDPAVGVRWLISPGEQPLLSEKDQRGLPLSQCET 180
>gi|237737858|ref|ZP_04568339.1| dTDP-4-dehydrorhamnose reductase [Fusobacterium mortiferum ATCC
9817]
gi|229419738|gb|EEO34785.1| dTDP-4-dehydrorhamnose reductase [Fusobacterium mortiferum ATCC
9817]
Length = 470
Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 121/189 (64%), Gaps = 4/189 (2%)
Query: 4 NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPY 63
+ ++++K + F+D RG+F + ++ + K+LG+ + FVQDNHS S G +RGLHFQ +
Sbjct: 12 DEIKLIKPKIFQDERGFFLEFFNYEEFKKLGIDERFVQDNHSKS-KRGVLRGLHFQ-TKH 69
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
Q KLVR I G I+DI VDIR+ S T+G W +E+++ + +YIP GFAHGF+TLE +T
Sbjct: 70 PQGKLVRVIKGAIYDIIVDIRKGSSTFGKWFGVELNSYDKKMLYIPKGFAHGFLTLEDDT 129
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILP--SVSEKDQNLPFLNQIDSPFEY 181
E+ YK DFY +++SG+ + DK +++ W L + + ++SEKD+ + ++
Sbjct: 130 EIEYKCNDFYYPQYESGIMYDDKDLNVDWKLEEYRITELTLSEKDKKHQSFKEYTERYQG 189
Query: 182 DGLPLLSLN 190
D + L N
Sbjct: 190 DYVLLTGAN 198
>gi|213023410|ref|ZP_03337857.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 165
Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 100/156 (64%), Gaps = 2/156 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ + +E +G + FVQDNHS S +RGLHFQR
Sbjct: 9 IPDVLILEPKVFGDERGFFFESYNQQTFEESIGRKVTFVQDNHSKS-KKNVLRGLHFQRG 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 68 ENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDT 157
E +YK T++YS + + W D++I I W
Sbjct: 128 YAEFLYKATNYYSPSSEGSILWNDETIGIEWSFFSA 163
>gi|110833775|ref|YP_692634.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alcanivorax borkumensis SK2]
gi|110646886|emb|CAL16362.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alcanivorax borkumensis SK2]
Length = 183
Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 106/166 (63%), Gaps = 5/166 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ-RP 61
I V+++K + F D RG+F +T++++ E G+ FVQDNHS S T+RGLH+Q +
Sbjct: 8 IPEVKLIKPKVFGDERGFFMETWNARAFAEAGIDATFVQDNHSRSVK-NTLRGLHYQIKQ 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLVRC G +FD+AVD+R++SPT+G WV +S N Q+++P GFAHGF+ +
Sbjct: 67 P--QGKLVRCTRGEVFDVAVDLRKSSPTFGQWVGEILSEENQNQLWVPPGFAHGFLVMTE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL-DTILPSVSEKD 166
+ YK TDFY+ EHD + W D I I WP + P VS+KD
Sbjct: 125 TADFQYKCTDFYAPEHDRCIHWADSKIGIDWPFEPEARSPLVSQKD 170
>gi|330951118|gb|EGH51378.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae Cit 7]
Length = 181
Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 111/170 (65%), Gaps = 7/170 (4%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + + F D RG+F ++++ K +E +G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVIVFEPKVFGDDRGFFFESFNQKAFEEAVGRSVTFVQDNHSRSVK-GVLRGLHYQ 64
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
+ P Q KLVR G +FD+AVD+R++SPT+G WV L ++A N Q++IP GFAHGF+
Sbjct: 65 IQQP--QGKLVRVTVGEVFDVAVDLRKSSPTFGKWVGLHLTAENKKQLWIPEGFAHGFVV 122
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
L + E +YK TD+++ EH+ +AW D ++ I WP + PS+S KDQ
Sbjct: 123 LSESAEFLYKTTDYWAPEHERSLAWNDTTVGIDWPFGEA--PSLSAKDQK 170
>gi|260428729|ref|ZP_05782707.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Citreicella sp. SE45]
gi|260420323|gb|EEX13575.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Citreicella sp. SE45]
Length = 202
Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 107/175 (61%), Gaps = 1/175 (0%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I+ +F D+RG FS+ ++ L+ + FVQDN S S D G +RGLH Q PP AQ
Sbjct: 24 VVIVTPNRFGDARGHFSEVWNRDTLRGHAIDIEFVQDNQSLSRDVGVVRGLHCQAPPRAQ 83
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR G IFD+AVD+RR+S TYG WV +E+SA NG Q+ +P GF HGF+T E +T V
Sbjct: 84 DKLVRVAQGAIFDVAVDVRRDSETYGQWVGVELSAENGRQLLVPRGFLHGFVTREPDTLV 143
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
IYK +D Y+ + + V W D + I W +D +S KD P ++PF+
Sbjct: 144 IYKCSDSYAPDTERPVFWADPDLAIDWG-IDPAQAILSAKDAEAPAFAAFETPFD 197
>gi|323144443|ref|ZP_08079047.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Succinatimonas hippei YIT
12066]
gi|322415782|gb|EFY06512.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Succinatimonas hippei YIT
12066]
Length = 183
Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 110/173 (63%), Gaps = 3/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V ++ +KF D+RGWFS+ + S+ K +G Q FVQ N SFS +RG+H+Q
Sbjct: 7 SIPEVLLITNKKFGDNRGWFSEVFRLSEFEKAIGGQYKFVQINESFSMH-NILRGIHYQN 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P + Q KLVR ++G +FD+AVD+R+NSPT+ WV + +SA NG Q+++P GF HGF
Sbjct: 66 P-HPQGKLVRVVSGEVFDVAVDLRKNSPTFKQWVGVTLSAQNGQQLWVPPGFGHGFFVTG 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ +Y TD+Y+ + + +A+ D +DI WP++ +P VSEKD+ N
Sbjct: 125 EHAHFVYACTDYYAPQTEHCIAYDDPELDIKWPIILGKMPLVSEKDRKGKAFN 177
>gi|225350728|ref|YP_002720717.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brachyspira hyodysenteriae
WA1]
gi|225216412|gb|ACN85145.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brachyspira hyodysenteriae
WA1]
Length = 192
Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 114/183 (62%), Gaps = 3/183 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++IN + I + R F DSRG+F +TYS K E G+++ FVQDN S S +RGLH+Q+
Sbjct: 8 LDINGLFIAEPRIFGDSRGYFLETYSEKDFFEAGIKEKFVQDNQSKS-TKNVLRGLHYQK 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Y QAKLVR + G +FD+AVD+R +SPT+G + + ++ N Q +IP GFAHGF+ L
Sbjct: 67 K-YCQAKLVRVLEGEVFDVAVDLRNDSPTFGKYYGVLLTEENKKQFFIPKGFAHGFIVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ YK +DFY E + G+ + DK+I+I W DT VS+KD LP ++ F
Sbjct: 126 ESAVFAYKCSDFYHPEEEGGIIYNDKNINIDWT-CDTKDVLVSDKDLKLPEFDKNKKYFS 184
Query: 181 YDG 183
DG
Sbjct: 185 LDG 187
>gi|23500186|ref|NP_699626.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella suis 1330]
gi|161620506|ref|YP_001594392.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella canis ATCC 23365]
gi|163844603|ref|YP_001622258.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella suis ATCC 23445]
gi|254699693|ref|ZP_05161521.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella suis bv. 5 str. 513]
gi|254702829|ref|ZP_05164657.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella suis bv. 3 str. 686]
gi|254706050|ref|ZP_05167878.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella pinnipedialis
M163/99/10]
gi|254712263|ref|ZP_05174074.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella ceti M644/93/1]
gi|254715334|ref|ZP_05177145.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella ceti M13/05/1]
gi|256015220|ref|YP_003105229.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella microti CCM 4915]
gi|256059351|ref|ZP_05449553.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella neotomae 5K33]
gi|256157869|ref|ZP_05455787.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella ceti M490/95/1]
gi|256253170|ref|ZP_05458706.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella ceti B1/94]
gi|260167195|ref|ZP_05754006.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella sp. F5/99]
gi|260568258|ref|ZP_05838727.1| dTDP-4-dehydrorhamnose reductase [Brucella suis bv. 4 str. 40]
gi|261217064|ref|ZP_05931345.1| dTDP-4-dehydrorhamnose reductase [Brucella ceti M13/05/1]
gi|261220277|ref|ZP_05934558.1| dTDP-4-dehydrorhamnose reductase [Brucella ceti B1/94]
gi|261313487|ref|ZP_05952684.1| dTDP-4-dehydrorhamnose reductase [Brucella pinnipedialis
M163/99/10]
gi|261319934|ref|ZP_05959131.1| dTDP-4-dehydrorhamnose reductase [Brucella ceti M644/93/1]
gi|261323310|ref|ZP_05962507.1| dTDP-4-dehydrorhamnose reductase [Brucella neotomae 5K33]
gi|261750158|ref|ZP_05993867.1| dTDP-4-dehydrorhamnose reductase [Brucella suis bv. 5 str. 513]
gi|261753431|ref|ZP_05997140.1| dTDP-4-dehydrorhamnose reductase [Brucella suis bv. 3 str. 686]
gi|261756599|ref|ZP_06000308.1| dTDP-4-dehydrorhamnose reductase [Brucella sp. F5/99]
gi|265996377|ref|ZP_06108934.1| dTDP-4-dehydrorhamnose reductase [Brucella ceti M490/95/1]
gi|23463787|gb|AAN33631.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella suis 1330]
gi|161337317|gb|ABX63621.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella canis ATCC 23365]
gi|163675326|gb|ABY39436.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella suis ATCC 23445]
gi|255997880|gb|ACU49567.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella microti CCM 4915]
gi|260154923|gb|EEW90004.1| dTDP-4-dehydrorhamnose reductase [Brucella suis bv. 4 str. 40]
gi|260918861|gb|EEX85514.1| dTDP-4-dehydrorhamnose reductase [Brucella ceti B1/94]
gi|260922153|gb|EEX88721.1| dTDP-4-dehydrorhamnose reductase [Brucella ceti M13/05/1]
gi|261292624|gb|EEX96120.1| dTDP-4-dehydrorhamnose reductase [Brucella ceti M644/93/1]
gi|261299290|gb|EEY02787.1| dTDP-4-dehydrorhamnose reductase [Brucella neotomae 5K33]
gi|261302513|gb|EEY06010.1| dTDP-4-dehydrorhamnose reductase [Brucella pinnipedialis
M163/99/10]
gi|261736583|gb|EEY24579.1| dTDP-4-dehydrorhamnose reductase [Brucella sp. F5/99]
gi|261739911|gb|EEY27837.1| dTDP-4-dehydrorhamnose reductase [Brucella suis bv. 5 str. 513]
gi|261743184|gb|EEY31110.1| dTDP-4-dehydrorhamnose reductase [Brucella suis bv. 3 str. 686]
gi|262550674|gb|EEZ06835.1| dTDP-4-dehydrorhamnose reductase [Brucella ceti M490/95/1]
Length = 174
Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 109/172 (63%), Gaps = 3/172 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NIN ++ + +D RGWF++ Y E L+ F Q + SFS + GT+RGLH+Q
Sbjct: 6 LNINGAWSIEPERLKDERGWFARVYCEAAFAERKLETHFPQHSLSFSREKGTLRGLHYQN 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+++ KLV C+ G ++D+ VD+R +SPTY W +E+SA NG+Q+YIP G AHGF TL
Sbjct: 66 EPHSETKLVTCLQGIVWDVLVDLRPHSPTYRRWAGVELSAENGVQLYIPEGCAHGFQTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ + Y ++ Y+ +H +G+ + D ++DI WP ++ +S+KD PFL
Sbjct: 126 DDVLIRYMISKPYAPDHAAGIRYDDPALDIPWPEKPSV---ISQKDLGWPFL 174
>gi|76666636|emb|CAJ31157.1| probable dTDP-4-dehydrorhamnose 3,5-epimerase [uncultured
sulfate-reducing bacterium]
Length = 180
Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 108/172 (62%), Gaps = 7/172 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ--RPPY 63
V +LK + FED+RG+F +T++SK L ELG+ +VQDNHS S G +RGLH+Q RP
Sbjct: 4 VYLLKPQVFEDNRGFFMETFNSKGLAELGIDRQWVQDNHSRSAR-GVLRGLHYQLGRP-- 60
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
QAKLVR GR+FD+AVDIR SP +G W E+S N L ++ P GFAHGF+ L
Sbjct: 61 -QAKLVRATRGRVFDVAVDIRPGSPHFGQWTGAELSEENKLMLFAPEGFAHGFVVLSDVA 119
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YK +D+++ + +AW D I I WP ++ P +S KD P L ++
Sbjct: 120 EFQYKCSDYWAPAEERAIAWNDPDIGIEWP-VEGFEPQLSGKDAANPKLAEV 170
>gi|116495477|ref|YP_807211.1| dTDP-4-dehydrorhamnose 3,5-epimerase related enzyme [Lactobacillus
casei ATCC 334]
gi|191638940|ref|YP_001988106.1| RmlC [Lactobacillus casei BL23]
gi|191638981|ref|YP_001988147.1| RmlC [Lactobacillus casei BL23]
gi|116105627|gb|ABJ70769.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus casei ATCC 334]
gi|190713242|emb|CAQ67248.1| RmlC [Lactobacillus casei BL23]
gi|190713283|emb|CAQ67289.1| RmlC [Lactobacillus casei BL23]
gi|215272230|dbj|BAG84629.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus casei]
gi|327382988|gb|AEA54464.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus casei LC2W]
gi|327383034|gb|AEA54510.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus casei LC2W]
gi|327386176|gb|AEA57650.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus casei BD-II]
gi|327386221|gb|AEA57695.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus casei BD-II]
Length = 190
Score = 150 bits (379), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 108/176 (61%), Gaps = 1/176 (0%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V++++T F D+RG+F++TY+ G+ + F QDN S S + G +RG+H+Q P AQ
Sbjct: 13 VKLVETDVFGDNRGFFTETYTRDKFVAAGITNDFNQDNQSLSAEAGVLRGMHYQMAPDAQ 72
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G + D+ VDIR+ SPTYG W +S N Q+++P GFAHGF+TL N
Sbjct: 73 TKLVRVVTGVVEDVLVDIRKGSPTYGQWEGYILSEFNHRQLFVPKGFAHGFITLTPNVNF 132
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YKV FY+ + D G+A+ D I I WP+ L +S+KD+ P L ++ F Y
Sbjct: 133 CYKVEGFYAPQSDRGIAFDDPDIGIQWPMSTDHL-IMSDKDKKHPQLKDAENNFVY 187
>gi|237799712|ref|ZP_04588173.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331022567|gb|EGI02624.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 181
Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 110/170 (64%), Gaps = 7/170 (4%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + + F D RG+F ++++ K +E+ G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVIVFEPKTFGDERGFFFESFNQKAFEEVVGRPVKFVQDNHSRSVK-GVLRGLHYQ 64
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
+ P Q KLVR G +FD+AVD+R++SPT+G WV L ++A N Q++IP GFAHGF+
Sbjct: 65 IQQP--QGKLVRVTVGEVFDVAVDLRKSSPTFGKWVGLHLTAENKKQLWIPEGFAHGFVV 122
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
L + E +YK TD+++ EH+ + W D S+ I WP + PS+S KDQ
Sbjct: 123 LSESAEFLYKTTDYWAPEHERSLVWNDASVGIEWPFSEA--PSLSAKDQK 170
>gi|301067029|ref|YP_003789052.1| dTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme [Lactobacillus
casei str. Zhang]
gi|300439436|gb|ADK19202.1| dTDP-4-dehydrorhamnose 3,5-epimerase related enzyme [Lactobacillus
casei str. Zhang]
Length = 190
Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 108/176 (61%), Gaps = 1/176 (0%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V++++T F D+RG+F++TY+ G+ + F QDN S S + G +RG+H+Q P AQ
Sbjct: 13 VKLVETDVFGDNRGFFTETYTRDKFLAAGITNDFNQDNQSLSAEAGVLRGMHYQMAPDAQ 72
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G + D+ VDIR+ SPTYG W +S N Q+++P GFAHGF+TL N
Sbjct: 73 TKLVRVVTGVVEDVLVDIRKGSPTYGQWEGYILSEFNHRQLFVPKGFAHGFITLTPNVNF 132
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YKV FY+ + D G+A+ D I I WP+ L +S+KD+ P L ++ F Y
Sbjct: 133 CYKVEGFYAPQSDRGIAFDDPDIGIQWPMSTDHL-IMSDKDKKHPQLKDAENNFVY 187
>gi|237711069|ref|ZP_04541550.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 9_1_42FAA]
gi|229454913|gb|EEO60634.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 9_1_42FAA]
Length = 189
Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 113/182 (62%), Gaps = 6/182 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F+D RG+F +++S + +E + FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IEDVVIIEPRLFKDERGYFFESFSQREFEEKIRKISFVQDNESKS-SYGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLVR I G + D+AVDIR+ SPT+G V++E++ N LQ++IP GFAHGF L
Sbjct: 67 YAQSKLVRVIKGAVLDVAVDIRKGSPTFGKHVAIELTEENHLQLFIPRGFAHGFSVLSQE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPFE 180
YK +FY+ + + +AW D ++I W P IL SEKD++ L F+
Sbjct: 127 VIFQYKCDNFYAPQSEGALAWDDSDLNINWRIPTNQIIL---SEKDKHHEKLKDASWLFD 183
Query: 181 YD 182
Y+
Sbjct: 184 YN 185
>gi|148238439|ref|YP_001223826.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. WH 7803]
gi|147846978|emb|CAK22529.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. WH 7803]
Length = 205
Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 111/185 (60%), Gaps = 13/185 (7%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLK----ELGLQD------VFVQDNHSFSFDCGTIRGLH 57
++ R F D RG+F ++++ + + E G+ VF QDNHS S G +RGLH
Sbjct: 19 LITPRVFADERGFFYESWNERRFRAELIEAGVPAAEAEALVFRQDNHSRS-SRGVLRGLH 77
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
+Q PP Q KLVRC G IFD+AVD+RR SPTYG WV E+SA N Q+++P GFAHGF+
Sbjct: 78 YQLPPEPQGKLVRCSLGAIFDVAVDLRRASPTYGQWVGAELSAANHQQLWVPVGFAHGFL 137
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL--PSVSEKDQNLPFLNQI 175
TL EV YK + F++ + + + W D ++ I WPL + P ++ KD + P L +
Sbjct: 138 TLTDVAEVQYKASGFWNRDCERSLRWDDSALAIAWPLEQAGVSEPLLAPKDADAPLLASL 197
Query: 176 DSPFE 180
D+ E
Sbjct: 198 DAAAE 202
>gi|85710316|ref|ZP_01041381.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Erythrobacter sp. NAP1]
gi|85689026|gb|EAQ29030.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Erythrobacter sp. NAP1]
Length = 181
Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 111/170 (65%), Gaps = 3/170 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ + F D RG+F ++++++ + GL FVQDNHS S G +RG+HFQ P Q K
Sbjct: 13 IIEPKVFGDERGFFMESWNAQAFADAGLDIAFVQDNHSRS-QKGVLRGMHFQNPG-PQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR ++G +FD+AVD+RR+SPT+G WV +E+SA N ++P GFAHGF+TLE NT+ +Y
Sbjct: 71 LVRVVSGAVFDVAVDLRRSSPTFGKWVGVELSAQNKRMFWVPQGFAHGFLTLEDNTDFLY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
K Y+ + + +AW D + I WP D + +S KD+ L ++++
Sbjct: 131 KCDAPYAPQTEHSLAWDDPEVGIQWP-TDGLEVQLSSKDREGKSLGEVEA 179
>gi|257468314|ref|ZP_05632410.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium ulcerans ATCC
49185]
gi|317062592|ref|ZP_07927077.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium ulcerans ATCC
49185]
gi|313688268|gb|EFS25103.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium ulcerans ATCC
49185]
Length = 193
Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 109/169 (64%), Gaps = 6/169 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + IL+ F D RG+F +TY+ K +E+G+ + FVQDNHS S G +RGLHFQ
Sbjct: 11 IEGLYILEPTIFGDERGFFLETYNKKEFEEIGIFEEFVQDNHSKS-KKGVLRGLHFQ-TK 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR + G ++D+AVDIR+NS TYG W +E+SA N +IP GFAHGF+TLE
Sbjct: 69 HPQGKLVRVLKGSVYDVAVDIRKNSSTYGKWYGIELSAENKKIFFIPKGFAHGFLTLEDE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS----VSEKDQ 167
TE YK TDFY ++DSG+ W DK I+I W L +SEKD+
Sbjct: 129 TEFQYKCTDFYMPQYDSGIMWNDKEININWNFEKYGLKEEGIVLSEKDK 177
>gi|157376144|ref|YP_001474744.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sediminis HAW-EB3]
gi|157318518|gb|ABV37616.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sediminis HAW-EB3]
Length = 181
Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 107/166 (64%), Gaps = 2/166 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+I++ + F D RG+F +T+ + L KE FVQ+NHS S + G +RGLH+Q
Sbjct: 8 IPDVKIIEPQVFGDERGFFMETFRTSLFKEKCGDIEFVQENHSKS-NHGILRGLHYQTEQ 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR G +FD+AVD+R++SPTYG WV +SA N Q+++P GFAHGF + +
Sbjct: 67 -TQGKLVRVTKGEVFDVAVDLRKDSPTYGQWVGEILSAENKRQLWVPAGFAHGFYVMSED 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK TD+Y+ + + W D ++++ WP +D P +SEKD+N
Sbjct: 126 AEFMYKCTDYYNPSAEVSIKWDDPTLNVQWPWVDKQAPLLSEKDKN 171
>gi|332879845|ref|ZP_08447534.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332682222|gb|EGJ55130.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 182
Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 111/180 (61%), Gaps = 6/180 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ + F D RG+F +++S + E FVQDN S S G +RGLHFQ+P
Sbjct: 7 KIEGVVIIEPQVFFDGRGYFFESFSQQRFNEQVAPITFVQDNESKS-SYGVLRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ Q+KLVR + G++ D+AVD+RRNSPT+G + S+ ++ N Q ++P GFAHGF L
Sbjct: 66 PFTQSKLVRVVKGKVLDVAVDLRRNSPTFGQYESVLLTEENKRQFFVPQGFAHGFAVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPF 179
YK ++Y+ + + V W D SI+I W P+ D +L SEKD+N P L +++ F
Sbjct: 126 EAIFQYKCDNYYAPQSEGSVRWDDPSINIDWQLPIADVLL---SEKDKNAPLLEALETIF 182
>gi|291527356|emb|CBK92942.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium rectale M104/1]
Length = 216
Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 104/163 (63%), Gaps = 2/163 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ D+RG+F +TY+SK ++E G+ VFVQDN S S G +RGLHFQ+
Sbjct: 26 GIEGLCIIEPTVHGDNRGYFMETYNSKDMQEAGIDRVFVQDNQSCSTK-GVLRGLHFQKE 84
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y QAKLVR + G +FD+AVD+R +S TYG W +E++ N Q IP GFAHGF+ L
Sbjct: 85 -YPQAKLVRAVKGSVFDVAVDLRSDSKTYGKWFGVELTEENKKQFLIPEGFAHGFLVLSD 143
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSE 164
E YKVTDF+ + +SG+AW D +I I WP L P ++
Sbjct: 144 VAEFCYKVTDFWHLGDESGLAWNDPAIGIEWPQLVGEYPGSAD 186
>gi|330972799|gb|EGH72865.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 181
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 111/170 (65%), Gaps = 7/170 (4%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + + F D RG+F ++++ K +E+ G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVIVFEPKTFGDDRGFFFESFNQKAFEEVVGRPVKFVQDNHSRSVK-GVLRGLHYQ 64
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
+ P Q KLVR G +FD+AVD+R++SPT+G WV L ++A N Q++IP GFAHGF+
Sbjct: 65 IQQP--QGKLVRVTVGEVFDVAVDLRKSSPTFGKWVGLHLTAENKKQLWIPEGFAHGFVV 122
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
L + E +YK TD+++ EH+ +AW D ++ I WP + PS+S KDQ
Sbjct: 123 LSESAEFLYKTTDYWAPEHERSLAWNDATVGIDWPFGEA--PSLSAKDQK 170
>gi|146309305|ref|YP_001189770.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas mendocina ymp]
gi|145577506|gb|ABP87038.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas mendocina ymp]
Length = 182
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 106/164 (64%), Gaps = 4/164 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ + F D RG+F ++++++ E G+ FVQDNHS S G +RGLH+Q A
Sbjct: 11 VLILEPQVFGDERGFFYESFNARRFAEATGVNREFVQDNHSRSAR-GVLRGLHYQLQQ-A 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR AG ++D+AVD+RR+SP +G WV + +SA N Q+++P GFAHGF+ L E
Sbjct: 69 QGKLVRASAGEVYDVAVDVRRSSPNFGKWVGVHLSAENKRQLWVPEGFAHGFLVLSEYAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+YK TD+Y+ H+ + W D + I WP LD + P +S KDQ
Sbjct: 129 FLYKTTDYYAPAHERCIRWDDAHLAIDWP-LDGLTPQLSAKDQQ 171
>gi|237802169|ref|ZP_04590630.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331025026|gb|EGI05082.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 181
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 109/172 (63%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ R F D RG+F ++++++ +E GL FVQDNHS S G +RGLH+Q A
Sbjct: 11 VVILEPRVFGDERGFFYESFNAQAFQEATGLTRHFVQDNHSRS-QQGVLRGLHYQ-IENA 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR AG++ D+AVDIRR+SP +G WV++E+SA N Q+++P GFAHGF+ L E
Sbjct: 69 QGKLVRVTAGKVLDVAVDIRRSSPNFGQWVAVELSAENACQLWVPEGFAHGFVVLSEQAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD+Y+ + +AW D + I W PS+S KDQ L + D
Sbjct: 129 FLYKTTDYYTPSAERCIAWNDPDLAIDWQFDGQ--PSLSAKDQQGKSLKEAD 178
>gi|158521029|ref|YP_001528899.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfococcus oleovorans
Hxd3]
gi|158509855|gb|ABW66822.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfococcus oleovorans
Hxd3]
Length = 187
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 107/178 (60%), Gaps = 5/178 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I VRI++ FED+RG+F +TY + G+ FVQDN SFS GT+RGLH+Q P
Sbjct: 7 DITGVRIIEPDVFEDARGFFMETYQRQRYAGYGVDVDFVQDNLSFS-SAGTLRGLHYQYP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLV I+G I+D+AVD+RR SPT+G WV +S+ N Q +IP GFAHGF+ +
Sbjct: 66 -FAQEKLVHVISGEIYDVAVDVRRGSPTFGRWVGTALSSANRRQFFIPKGFAHGFLVVSD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
V YK D+Y E D + W D ++ I W T P +S KD P L I S +
Sbjct: 125 TALVTYKCGDYYHPEADRTLRWDDPALIIDW---GTKTPLLSPKDAAAPSLKDIPSGY 179
>gi|73540421|ref|YP_294941.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia eutropha JMP134]
gi|72117834|gb|AAZ60097.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia eutropha JMP134]
Length = 183
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 115/166 (69%), Gaps = 5/166 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+I++ + F D RG+F ++++++ ++ +GL+ FVQDNHS S CG +RGLH+Q
Sbjct: 10 IPEVKIIEPKVFGDDRGFFLESFNARAFEQAMGLKRDFVQDNHSRS-ACGVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR +AG +FD+AVD+R++SPT+G WV + +S +N Q+++P GFAHGF+ +
Sbjct: 69 -HPQGKLVRVVAGEVFDVAVDLRKSSPTFGKWVGVTLSVDNKRQLWVPEGFAHGFLVMSS 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+ E +YK TD++ E++ + W D ++ I WPL T P ++ KD+
Sbjct: 128 SAEFLYKTTDYWYPEYERSLLWNDPTVGIEWPL--TGDPILAAKDE 171
>gi|222087846|ref|YP_002546384.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Agrobacterium radiobacter
K84]
gi|221725294|gb|ACM28450.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Agrobacterium radiobacter
K84]
Length = 183
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 103/179 (57%), Gaps = 5/179 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V +L+ R+F D RG F++T+ +ELG FVQDN S S G +RGLH+Q P
Sbjct: 10 IPDVLLLEHREFGDDRGSFTETFRDSAFQELGFPQ-FVQDNQSRS-SKGVVRGLHYQVNP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
A KLVRC+ GRIFD+AVD+R SPTYG W E++ + Y+P GFAHGFM LE +
Sbjct: 68 NAVGKLVRCVHGRIFDVAVDLRLGSPTYGKWTGTELAGTDNHMFYVPEGFAHGFMALEDD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
T V Y+ T ++ + + W D + I WP L +L S KD N +D F Y
Sbjct: 128 TLVSYRQTGYWDAASERSLLWNDPDVAIDWPKLAVLL---SPKDANATRFADVDHNFRY 183
>gi|88813324|ref|ZP_01128562.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Nitrococcus mobilis Nb-231]
gi|88789382|gb|EAR20511.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Nitrococcus mobilis Nb-231]
Length = 182
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M+ P R+ +K + D+RG+F +T+ + ++ GL FVQDNHS S G +RG
Sbjct: 1 MDFIPTRLPDVILIKPQVAGDARGYFMETWHERKFQDAGLDVRFVQDNHSRS-RHGILRG 59
Query: 56 LHFQ-RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
LH+Q R P Q KLVR ++G +FD+AVD+RR+SP++G WV +E+S N ++IP GFAH
Sbjct: 60 LHYQIRQP--QGKLVRVVSGAVFDVAVDLRRSSPSFGQWVGVELSEENKHMLWIPPGFAH 117
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
GF + E +YK TDF++ +H+ + W D +DI WP+ P +SEKD+
Sbjct: 118 GFYVSAEHAEFVYKCTDFWAPQHERTIRWDDSELDIAWPIPTHAAPLLSEKDR 170
>gi|197333915|ref|YP_002154931.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio fischeri MJ11]
gi|197315405|gb|ACH64852.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio fischeri MJ11]
Length = 189
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 107/172 (62%), Gaps = 6/172 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQRPPY 63
V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 11 VKIIEPSVFGDERGFFMETWNQKQFEELVTGKLTQFVQDNHSKS-KKGILRGLHYQTEN- 68
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
Q KLVR I+G +FD+AVDIR+ SPT+G W+ +SA N Q++IP GFAHGF
Sbjct: 69 TQGKLVRVISGEVFDVAVDIRKGSPTFGQWIGEYLSAENKRQLWIPEGFAHGFYVTSEEA 128
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ + + W D +++I WPL +LPS+S KD+ N +
Sbjct: 129 EFVYKCTDYYNPTAEVSIKWDDPTVNIEWPL--KMLPSLSNKDKKAKMFNDV 178
>gi|302337208|ref|YP_003802414.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Spirochaeta smaragdinae DSM
11293]
gi|301634393|gb|ADK79820.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Spirochaeta smaragdinae DSM
11293]
Length = 180
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 105/174 (60%), Gaps = 4/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V I+K R F D RG+F +TY + G+ FVQDNHS+S G +RG+HFQ+
Sbjct: 9 KISGVMIVKPRIFPDERGFFMETYKKSDFESAGICADFVQDNHSYS-AFGVLRGIHFQKA 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLV + G ++D+AVD+R +SPT+ WV + +++ G +Y+P G HGF+ L
Sbjct: 68 SHAQGKLVHAVEGSVWDVAVDLRPSSPTFKQWVGITLNSEEGTMLYLPPGCGHGFVVLSH 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+YK T Y+ + D G+ W D + + WP+ P VSEKD LPF +++
Sbjct: 128 TVHFLYKCTTEYAPQADGGIRWNDPDLAVAWPVDH---PQVSEKDAALPFFSEV 178
>gi|265763212|ref|ZP_06091780.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_16]
gi|263255820|gb|EEZ27166.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_16]
Length = 187
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 112/181 (61%), Gaps = 6/181 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ R F+D RG+F ++++ + Q FVQDN S S G IRGLHFQ+PP
Sbjct: 8 IEGLVIIEPRLFQDDRGYFFESFNQGEFESKVCQTTFVQDNESKS-SYGVIRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ+KLVR I G + D+AVDIR++SPT+G +S+E++ +N Q +IP GFAHGF L
Sbjct: 67 FAQSKLVRVIKGAVLDVAVDIRKDSPTFGKHISVELTGDNHRQFFIPRGFAHGFCVLSKE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPFE 180
YK +FY E + +AW D ++I+W PL D +L S KD+N L ++ S
Sbjct: 127 VVFQYKCDNFYHPESEGTIAWNDIDLNISWRIPLEDVVL---SRKDKNALPLKEMYSDVN 183
Query: 181 Y 181
Y
Sbjct: 184 Y 184
>gi|148558245|ref|YP_001257420.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella ovis ATCC 25840]
gi|148369530|gb|ABQ62402.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella ovis ATCC 25840]
Length = 174
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 109/172 (63%), Gaps = 3/172 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NIN ++ + +D RGWF++ Y E L+ F Q + SFS + GT+RGLH+Q
Sbjct: 6 LNINGAWSIEPGRLKDERGWFARVYCEAAFAERKLETHFPQHSLSFSREKGTLRGLHYQN 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+++ KLV C+ G ++D+ VD+R +SPTY W +E+SA NG+Q+YIP G AHGF TL
Sbjct: 66 EPHSETKLVTCLQGIVWDVLVDLRPHSPTYRRWAGVELSAENGVQLYIPEGCAHGFQTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ + Y ++ Y+ +H +G+ + D ++DI WP ++ +S+KD PFL
Sbjct: 126 DDVLIRYMISKPYAPDHAAGIRYDDPALDIPWPEKPSV---ISQKDLGWPFL 174
>gi|307293848|ref|ZP_07573692.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingobium chlorophenolicum
L-1]
gi|306879999|gb|EFN11216.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingobium chlorophenolicum
L-1]
Length = 181
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 109/170 (64%), Gaps = 3/170 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ + F D RG+F +++++ +E GL FVQDNHS S G +RGLHFQ P Q K
Sbjct: 13 IIEPKVFGDDRGFFMESWNADRFREQGLDLTFVQDNHSRSAK-GVLRGLHFQNP-NPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR AGR++D+AVD+RR+S +G WV +E+SA N ++P GFAHGF+TLE T+ +Y
Sbjct: 71 LVRVTAGRVWDVAVDLRRSSRHFGKWVGVELSAENRRMFWVPPGFAHGFLTLEDGTDFLY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
K T Y H+ + W D ++ + WP LD I P +S KD L +I++
Sbjct: 131 KCTGRYDPSHEHSLLWNDPTVGVDWP-LDGIEPQLSGKDVAGKPLAEIEA 179
>gi|56476693|ref|YP_158282.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aromatoleum aromaticum EbN1]
gi|56312736|emb|CAI07381.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Aromatoleum aromaticum EbN1]
Length = 181
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 115/169 (68%), Gaps = 7/169 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ- 59
+I V +++ + F D+RG+F ++++++ ++ GL + FVQDNHS S G +RGLH+Q
Sbjct: 7 SIPDVLLIEPKVFGDARGFFFESFNARAFRDATGLDETFVQDNHSRSAR-GVLRGLHYQI 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
R P Q KLVR + G +FD+AVD+RR SP++G W +E+S +N Q++IP GFAHGF+ L
Sbjct: 66 RQP--QGKLVRVVRGAVFDVAVDLRRASPSFGRWAGVELSEDNHRQLWIPPGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+ + +YK TD+Y+ EH+ +AW D ++ I WPL + P +S KD+
Sbjct: 124 SESADFLYKTTDYYAPEHERCLAWNDPAVGIEWPL--GVAPLLSGKDRE 170
>gi|16129978|ref|NP_416542.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Escherichia coli str. K-12
substr. MG1655]
gi|89108858|ref|AP_002638.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Escherichia coli str. K-12
substr. W3110]
gi|170081668|ref|YP_001730988.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Escherichia coli str. K-12
substr. DH10B]
gi|238901228|ref|YP_002927024.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Escherichia coli BW2952]
gi|585830|sp|P37745|RMLC_ECOLI RecName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; AltName:
Full=Thymidine diphospho-4-keto-rhamnose 3,5-epimerase;
AltName: Full=dTDP-4-keto-6-deoxyglucose 3,5-epimerase;
AltName: Full=dTDP-6-deoxy-D-xylo-4-hexulose
3,5-epimerase; AltName: Full=dTDP-L-rhamnose synthase
gi|508240|gb|AAB88401.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli]
gi|510251|gb|AAC31630.1| dTDP-6-deoxy-L-xylo-4-hexulose 4-reductase [Escherichia coli str.
K12 substr. W3110]
gi|1736728|dbj|BAA15880.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Escherichia coli str. K12
substr. W3110]
gi|1788350|gb|AAC75099.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Escherichia coli str. K-12
substr. MG1655]
gi|169889503|gb|ACB03210.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Escherichia coli str. K-12
substr. DH10B]
gi|238861013|gb|ACR63011.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Escherichia coli BW2952]
gi|260448862|gb|ACX39284.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli DH1]
gi|281179137|dbj|BAI55467.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli SE15]
gi|315136672|dbj|BAJ43831.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Escherichia coli DH1]
Length = 185
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 109/174 (62%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ R F D RG+F ++++ + LG FVQDNHS S +RGLHFQR
Sbjct: 8 IEDVLILEPRVFGDDRGFFYESFNQSAFEHILGYPVSFVQDNHSRS-SKNVLRGLHFQRG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
YAQ KLVRC G +FD+AVDIR NS ++G WV + +SA+N Q++IP GFAHGF+ L
Sbjct: 67 EYAQDKLVRCTHGAVFDVAVDIRPNSVSFGKWVGVLLSADNKQQLWIPKGFAHGFLVLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YK T++Y E D G+ W D+ I I WP ++ +S KD+ L L+++
Sbjct: 127 IAEFQYKTTNYYHPESDCGICWNDERIAIDWPQTSGLI--LSPKDERLFTLDEL 178
>gi|254294496|ref|YP_003060519.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hirschia baltica ATCC 49814]
gi|254043027|gb|ACT59822.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hirschia baltica ATCC 49814]
Length = 176
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 105/166 (63%), Gaps = 3/166 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+L+ K D RG+F++T+ + +E G++ FVQ N SFS + GT+RG+H Q P+A+ K
Sbjct: 13 LLEVEKRGDDRGFFTRTFCAAEFREQGIEISFVQQNSSFSAEKGTLRGMHKQNAPHAEDK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVRCI G I DI VD+R S T+ W + E+S N ++ +P GF HGF TLE N EV Y
Sbjct: 73 LVRCIKGSIVDIIVDLRPESSTFKKWEAFELSETNRKELLVPRGFGHGFQTLEDNVEVTY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
V+++Y+ E +SGV D + I WPL T++ S+KD+N P
Sbjct: 133 LVSNYYTPEAESGVRHDDPAFGIEWPLPITVM---SDKDRNWPLFE 175
>gi|218134416|ref|ZP_03463220.1| hypothetical protein BACPEC_02319 [Bacteroides pectinophilus ATCC
43243]
gi|217989801|gb|EEC55812.1| hypothetical protein BACPEC_02319 [Bacteroides pectinophilus ATCC
43243]
Length = 183
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 104/175 (59%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I +++++ F D+RG+F +TY+ E G+ FVQDN S S G +RGLHFQ
Sbjct: 10 GIEGLKVIEPAVFGDNRGYFMETYNYNDFAEAGIDCKFVQDNQSAS-KKGVLRGLHFQ-I 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G +FD+AVDIR+ SPTYG W + +SA N Q +IP FAHGF+ L
Sbjct: 68 NYPQDKLVRVVNGEVFDVAVDIRKGSPTYGQWFGVVLSAENKKQFFIPKDFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E YKVTDFY + G+ W DK I I WP+ + + SEKD P + ++
Sbjct: 128 YAEFCYKVTDFYHPNDEGGIIWDDKDIGIEWPVPEGMELIFSEKDTKWPGIKSLN 182
>gi|291568776|dbj|BAI91048.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Arthrospira platensis
NIES-39]
Length = 182
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 113/174 (64%), Gaps = 9/174 (5%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIR 54
MN+ P +I ++ + F D RG+F ++++ K+ E G+ FVQDNHS S G +R
Sbjct: 1 MNVIPTKIPDVFLVEPKVFGDHRGFFFESFNQKVFTEKTGVTTDFVQDNHSRS-SQGVLR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
GLH+Q Q KL+R + G +FD+AVDIR++SPT+G WV +SA N Q++IP GFAH
Sbjct: 60 GLHYQIQ-QTQGKLLRVVLGEVFDVAVDIRKSSPTFGQWVGYYLSAENKQQLWIPPGFAH 118
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
GF+ EV+YK TD+Y+ +++ + W D I I WP L+++ P +SEKD+N
Sbjct: 119 GFLVTSPVAEVLYKTTDYYAPQYERSLLWNDPDIAIEWP-LESLEPKLSEKDKN 171
>gi|209526055|ref|ZP_03274588.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Arthrospira maxima CS-328]
gi|209493581|gb|EDZ93903.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Arthrospira maxima CS-328]
Length = 182
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 113/174 (64%), Gaps = 9/174 (5%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIR 54
MN+ P +I ++ + F D RG+F ++++ K+ E G+ FVQDNHS S G +R
Sbjct: 1 MNVIPTKIPDVFLVEPKVFGDDRGFFFESFNQKVFTEKTGVTTDFVQDNHSRS-SQGVLR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
GLH+Q Q KL+R + G +FD+AVDIR++SPT+G WV +SA N Q++IP GFAH
Sbjct: 60 GLHYQIQ-QTQGKLLRVVLGEVFDVAVDIRKSSPTFGQWVGYYLSAENKQQLWIPPGFAH 118
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
GF+ EV+YK TD+Y+ +++ + W D I I WP L+++ P +SEKD+N
Sbjct: 119 GFLVTSPVAEVLYKTTDYYAPQYERSLLWNDPDIAIEWP-LESLEPKLSEKDKN 171
>gi|332877115|ref|ZP_08444866.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332685005|gb|EGJ57851.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 190
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 112/180 (62%), Gaps = 4/180 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F D+RG+F +++S + L FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IEGVVIIEPRLFNDARGYFFESFSQRDFDRLVRTVHFVQDNESKS-SYGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLVR I G + D+AVDIR+ SPT+G V++E++ N Q +IP GFAHGF L
Sbjct: 67 YAQSKLVRVIKGAVLDVAVDIRKGSPTFGQHVAVELTEENHRQFFIPRGFAHGFSVLSPE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +FY+ + + +AW D +DI W + D I+ +SEKD++ P L + F+Y
Sbjct: 127 VIFQYKCDNFYAPQSEGALAWDDPDLDINWRIPSDKII--LSEKDKHHPRLKDAEWLFDY 184
>gi|160940165|ref|ZP_02087510.1| hypothetical protein CLOBOL_05054 [Clostridium bolteae ATCC
BAA-613]
gi|158436745|gb|EDP14512.1| hypothetical protein CLOBOL_05054 [Clostridium bolteae ATCC
BAA-613]
Length = 210
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + +++ F+D RG+F +TY+ KE GL VFVQDN S S G +RGLHFQ+
Sbjct: 36 DIKGLYVIEPAVFKDERGYFMETYNQNDFKEAGLGMVFVQDNQSMSVK-GVLRGLHFQKQ 94
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G ++D+AVD+R +S TYG W + +SA N Q YIP GFAHGF+ L
Sbjct: 95 -YPQGKLVRVVRGTVYDVAVDLRSDSETYGKWFGVILSAENKKQFYIPEGFAHGFLVLSD 153
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E YK TDFY + G+ W D I + WP+ + +S+KD+
Sbjct: 154 EAEFAYKCTDFYHPGDEGGLLWSDPEIGVDWPIEPDMQLIISDKDRK 200
>gi|284051016|ref|ZP_06381226.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Arthrospira platensis str.
Paraca]
Length = 182
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 113/174 (64%), Gaps = 9/174 (5%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIR 54
MN+ P +I ++ + F D RG+F ++++ K+ E G+ FVQDNHS S G +R
Sbjct: 1 MNVIPTKIPDVFLVEPKVFGDHRGFFFESFNQKVFTEKTGVTTDFVQDNHSRS-SQGVLR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
GLH+Q Q KL+R + G +FD+AVDIR++SPT+G WV +SA N Q++IP GFAH
Sbjct: 60 GLHYQIQ-QTQGKLLRVVLGEVFDVAVDIRKSSPTFGQWVGYYLSAENKQQLWIPPGFAH 118
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
GF+ EV+YK TD+Y+ +++ + W D I I WP L+++ P +SEKD+N
Sbjct: 119 GFLVTSPVAEVLYKTTDYYAPQYERSLLWNDPDIAIQWP-LESLEPKLSEKDKN 171
>gi|119513382|ref|ZP_01632415.1| dTDP-4-dehydrorhamnose 3,5-epimerase-like protein [Nodularia
spumigena CCY9414]
gi|119461961|gb|EAW42965.1| dTDP-4-dehydrorhamnose 3,5-epimerase-like protein [Nodularia
spumigena CCY9414]
Length = 212
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 112/174 (64%), Gaps = 10/174 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ- 59
I+ V +++ + F DSRG+F ++Y+ K +LG+ FVQDNHS S +RGLH+Q
Sbjct: 38 EISEVYLIEPQVFTDSRGFFLESYNQQKFTDKLGITVNFVQDNHSAS-QQNVLRGLHYQI 96
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
+P Q KLVR + G+IFD+AVDIR++SPT+G WV E+SA N Q++IP GFAHGF+
Sbjct: 97 IQP---QGKLVRAVVGKIFDVAVDIRKSSPTFGQWVGYELSAENKRQLWIPPGFAHGFLV 153
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD-QNLPF 171
L EV YK TD+Y+ + D + W D + I WP+ P +S+KD + PF
Sbjct: 154 LSEVAEVTYKTTDYYAAQGDRTILWNDPDLAINWPIKQP--PILSDKDNKGQPF 205
>gi|114321467|ref|YP_743150.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alkalilimnicola ehrlichii
MLHE-1]
gi|114227861|gb|ABI57660.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 182
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/171 (46%), Positives = 104/171 (60%), Gaps = 5/171 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ-RP 61
I V ++K F D RG+F +T+ + E G+ FVQDNHS S GT+RGLH+Q R
Sbjct: 8 IPDVILVKPDVFGDERGFFMETWQRRKFAEGGIDHDFVQDNHSRSVK-GTLRGLHYQIRQ 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLVR AG +FD+AVD+RR SPT+G W +SA+N +++P GFAHGF
Sbjct: 67 P--QGKLVRVTAGSVFDVAVDLRRGSPTFGQWAGEHLSADNHHMLWVPPGFAHGFYVTSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD-QNLPF 171
+ YK +D+Y+ EH+ + W D + I WPL D P VSEKD Q L F
Sbjct: 125 TADFQYKCSDYYAPEHEHCIRWDDPELGIDWPLSDNGAPLVSEKDRQGLAF 175
>gi|294853750|ref|ZP_06794422.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella sp. NVSL 07-0026]
gi|294819405|gb|EFG36405.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella sp. NVSL 07-0026]
Length = 174
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 108/172 (62%), Gaps = 3/172 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NIN ++ + +D RGWF++ Y E L+ F Q + SFS + GT+RGLH+Q
Sbjct: 6 LNINGAWSIEPERLKDERGWFARVYCEAAFAERKLETHFPQHSLSFSREKGTLRGLHYQN 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+++ KLV C+ G ++D+ D+R +SPTY W +E+SA NG+Q+YIP G AHGF TL
Sbjct: 66 EPHSETKLVTCLQGIVWDVLADLRPHSPTYRRWAGVELSAENGVQLYIPEGCAHGFQTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ + Y ++ Y+ +H +G+ + D ++DI WP ++ +S+KD PFL
Sbjct: 126 DDVLIRYMISKPYAPDHAAGIRYDDPALDIPWPEKPSV---ISQKDLGWPFL 174
>gi|253563860|ref|ZP_04841317.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_2_5]
gi|251947636|gb|EES87918.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_2_5]
Length = 195
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 115/189 (60%), Gaps = 12/189 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE------LGLQDVFVQDNHSFSFDCGTIRG 55
I V +++ + F+DSRG+F +++S + E G +FVQDN S S G +RG
Sbjct: 7 TIEGVVVIEPKVFKDSRGYFVESFSQREFDEKVAIPQYGKPILFVQDNESMS-SYGVMRG 65
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LHFQ PP+ Q+KLVRC+ G++ D+AVDIR+ SPTYG V++E++ +N Q+++P GFAHG
Sbjct: 66 LHFQLPPFTQSKLVRCVRGKVLDVAVDIRKGSPTYGHHVAVELTEDNHRQLFVPRGFAHG 125
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLN 173
F L YK +FY+ + D G++ +D+S+ I W P+ IL SEKD L
Sbjct: 126 FAVLSETAVFQYKCDNFYAPQADGGISIKDESLGIDWCIPMDKVIL---SEKDTQHECLK 182
Query: 174 QIDSPFEYD 182
PF+ +
Sbjct: 183 DFTPPFDIE 191
>gi|326336356|ref|ZP_08202527.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga sp. oral taxon
338 str. F0234]
gi|325691530|gb|EGD33498.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga sp. oral taxon
338 str. F0234]
Length = 188
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 108/175 (61%), Gaps = 6/175 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ + F D RG+F +++S K E FVQDN S S G +RGLHFQR P
Sbjct: 8 IEGVVIIEPKVFPDERGYFFESFSQKKFVENICNTTFVQDNESKS-SYGVLRGLHFQRAP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q+KLVR + G ++DIAVDIR+ SPT+G ++ +E++ N Q++IP GFAHGF+ L
Sbjct: 67 YTQSKLVRVVQGVVWDIAVDIRKGSPTFGKYIGVELTEENKRQLFIPRGFAHGFVVLSPE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQI 175
YK FY+ H+ GV W D I I W P D IL S+KD++ P L+++
Sbjct: 127 AIFQYKCDAFYAPTHEGGVLWNDPEIGIDWRIPPQDIIL---SQKDEHNPLLHEV 178
>gi|148380673|ref|YP_001255214.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum A str.
ATCC 3502]
gi|153933465|ref|YP_001384957.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum A str.
ATCC 19397]
gi|153936831|ref|YP_001388427.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum A str.
Hall]
gi|148290157|emb|CAL84276.1| probable DTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium
botulinum A str. ATCC 3502]
gi|152929509|gb|ABS35009.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum A str.
ATCC 19397]
gi|152932745|gb|ABS38244.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum A str.
Hall]
Length = 177
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 104/163 (63%), Gaps = 2/163 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V IL+ ED RG+F++T+ + K GL VQ N SF+ GT+RG+H+Q PPY +
Sbjct: 11 VYILEIEPIEDERGFFARTWCEEEFKVYGLNSNLVQCNISFNKRRGTLRGMHYQIPPYEE 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKLVRC G I+D+ +D+R NS T+ W ++E++ N +YIP GFAHGF TLE +TEV
Sbjct: 71 AKLVRCTKGSIYDVIIDLRPNSKTFKQWTAIELTDENRKMLYIPEGFAHGFQTLEDDTEV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
Y+++ FY E G+ W D + + WP+ ++ +S KD+N
Sbjct: 131 FYQMSQFYHPECARGIRWDDLTFSVDWPVRGDVI--ISYKDKN 171
>gi|116749695|ref|YP_846382.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Syntrophobacter fumaroxidans
MPOB]
gi|116698759|gb|ABK17947.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Syntrophobacter fumaroxidans
MPOB]
Length = 184
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 112/189 (59%), Gaps = 18/189 (9%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+L+ R F DSRG+F ++Y+ L++ G+ FVQDNHS S G +RGLH+Q +AQ K
Sbjct: 14 VLEPRVFGDSRGFFFESYNQNTLRQWGIVLPFVQDNHSGSRK-GVLRGLHYQVG-HAQGK 71
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
L+R +AG +FD+AVD+R SP +G W + +SA QIYIP GFAHGF+T+ EV+Y
Sbjct: 72 LIRVVAGEVFDVAVDLRTKSPAFGRWFGMILSAAERKQIYIPPGFAHGFLTVSDWAEVLY 131
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLPLL 187
K TDFY+ E + + W D I I WPL P++S KD +GLPL
Sbjct: 132 KTTDFYAPECERCIIWNDPDIGIDWPL--ECPPTLSSKDS--------------EGLPLS 175
Query: 188 SLNMERDLL 196
+ DL
Sbjct: 176 KADRYEDLF 184
>gi|148241181|ref|YP_001226338.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. RCC307]
gi|147849491|emb|CAK26985.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. RCC307]
Length = 193
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 103/168 (61%), Gaps = 3/168 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
++ R F D RGWF ++++ + E + V F QDNHS S G +RGLH+Q PP QA
Sbjct: 19 LITPRVFGDERGWFFESWNQRRFDEAAGEAVTFAQDNHSRSAQ-GVLRGLHYQLPPEPQA 77
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR G IFD+ VD+R++SPT G WV ++SA N Q+++P GFAHGF+TL EV
Sbjct: 78 KLVRVTVGEIFDVVVDLRQSSPTCGQWVGAQLSAENHQQLWVPEGFAHGFLTLSAVAEVQ 137
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
YK F++ + + W D ++ I WP L+ + VSEKD P L Q
Sbjct: 138 YKTRGFWNKGCERAIRWDDPALAIAWP-LEGLTVQVSEKDGLAPSLAQ 184
>gi|148557436|ref|YP_001265018.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingomonas wittichii RW1]
gi|148502626|gb|ABQ70880.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingomonas wittichii RW1]
Length = 182
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 107/177 (60%), Gaps = 3/177 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ R+++ D RG F++T+ + + GL FVQ N S S GTIRG+H+QRP
Sbjct: 7 TLKDARLIEVEPRGDERGMFARTFCRQEFEAHGLLTDFVQQNMSVSAQAGTIRGMHYQRP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ +AKLVRC+ GRI D+ VD+R SPTY E+SA+N Q+Y+P GFAH F TL
Sbjct: 67 PFTEAKLVRCVRGRILDVIVDMRSGSPTYLRHEGFELSADNRRQLYVPPGFAHSFQTLVD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
+ EV Y VT Y+ + + GV + D + I+WPL T ++S+KD P +++ P
Sbjct: 127 DIEVSYLVTAPYTPDAEGGVRYSDPLLAISWPLPVT---TISDKDAGWPLIDRSAEP 180
>gi|291548483|emb|CBL21591.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruminococcus sp. SR1/5]
Length = 185
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 103/166 (62%), Gaps = 2/166 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I +++++ F DSRG+F +TY+ KE G+ FVQDN S S G +RGLHFQ
Sbjct: 11 DIEGLKVIEPTVFGDSRGYFMETYNYNDFKEAGIDVEFVQDNQSSS-RYGVLRGLHFQ-I 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G +FD+AVD+R S T+G W + +SA N Q +IP GFAHGF+ L
Sbjct: 69 SYPQDKLVRVVNGEVFDVAVDLREGSKTFGKWYGVVLSAENKKQFFIPKGFAHGFLVLSE 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
N E YK +DFY + G+ W DK I++ WP+ + + S+KDQ
Sbjct: 129 NAEFTYKCSDFYHPNDEGGLIWNDKDINVEWPIPEGMELIFSDKDQ 174
>gi|163859123|ref|YP_001633421.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bordetella petrii DSM 12804]
gi|163262851|emb|CAP45154.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bordetella petrii]
Length = 181
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 111/179 (62%), Gaps = 7/179 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I V +++ D+RG+F ++Y +++L LG +FVQDN S S +RGLH+Q
Sbjct: 6 LSIPDVLLIEPEVHADARGYFFESYNAARLQAALGRAPMFVQDNQSRSLR-HVVRGLHYQ 64
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
R P QAKLVR +AG +FD+AVD+RR SPT+G W +SA N Q+++P GFAHGFM
Sbjct: 65 IRQP--QAKLVRVVAGEVFDVAVDLRRASPTFGQWAGAVLSAENKCQLWVPEGFAHGFMA 122
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
L E +YK +D+Y+ H+ V W D I I WP D ++ VSEKD+ L D+
Sbjct: 123 LSDVAETLYKASDYYAPAHERCVRWDDPDIGIAWPARDDVI--VSEKDRRGVALRDADT 179
>gi|254286303|ref|ZP_04961262.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae AM-19226]
gi|150423718|gb|EDN15660.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae AM-19226]
Length = 182
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 111/177 (62%), Gaps = 6/177 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPAVFGDERGFFMETWNQKRFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 -TENTQGKLVRVVSGEVFDVAVDIRKDSPTFGKWVGVYLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TDFY+ + + + W D +I I WP+ +T P +SEKD L ++
Sbjct: 125 SDEAEFVYKCTDFYNPKAEHSIRWDDDTIGIKWPITET--PLLSEKDSVGKLLKDVE 179
>gi|332142156|ref|YP_004427894.1| dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase [Alteromonas macleodii
str. 'Deep ecotype']
gi|327552178|gb|AEA98896.1| dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase [Alteromonas macleodii
str. 'Deep ecotype']
Length = 181
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 114/178 (64%), Gaps = 6/178 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V+I++ + F D RG+F +T+ + K+ FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPKVFGDERGFFLETFRTDWFKKECADVDFVQDNHSKS-SQGILRGLHYQIE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR ++G ++D+AVD+R++SPTYG WV + +SA N Q+++P GFAHGF
Sbjct: 66 Q-TQGKLVRVVSGEVYDVAVDMRKDSPTYGKWVGVTLSAENKRQLWVPAGFAHGFYVTSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ-NLPFLNQIDSP 178
N E +YK TD+Y E + V + D +++I WPL++ PS+S KD+ L F +D+P
Sbjct: 125 NAEFVYKCTDYYHPESEISVKYNDSTLNIDWPLVNGEKPSLSGKDEAGLAF---VDAP 179
>gi|288942437|ref|YP_003444677.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Allochromatium vinosum DSM
180]
gi|288897809|gb|ADC63645.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Allochromatium vinosum DSM
180]
Length = 189
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 104/173 (60%), Gaps = 3/173 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V IL+ + + D RG+F +TY + ELG+ VQDN SFS G +RGLH Q P
Sbjct: 8 IPGVLILEPKVWGDERGYFLETYRANQYAELGIPAPLVQDNQSFS-RRGVLRGLHAQHP- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLV+ +AG +FD+AVDIRR SP +G WV + +S N Q +IP GFAHGF+ N
Sbjct: 66 RAQGKLVQVLAGEVFDVAVDIRRGSPHFGHWVGVTLSGENKRQFWIPPGFAHGFLVTGEN 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+YK TD+YS E + V W D + I WPL + P +S KD++ L I
Sbjct: 126 ALFVYKNTDYYSPETEFSVRWDDPDLGIDWPLA-GMTPELSAKDRDAARLRDI 177
>gi|16331184|ref|NP_441912.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechocystis sp. PCC 6803]
gi|1653678|dbj|BAA18590.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechocystis sp. PCC 6803]
Length = 182
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 112/173 (64%), Gaps = 10/173 (5%)
Query: 1 MNINP-----VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIR 54
MN+ P V IL+ + F D RG+F ++Y+ K+ ++ +G++ FVQDNHSFS G +R
Sbjct: 1 MNVIPTTIADVLILEPKVFGDERGFFFESYNDKVFQQAVGIEPHFVQDNHSFS-RQGVVR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
GLH+Q + Q KLVR G IFD+AVD+RRNSP++G WV ++ +N Q++IP GFAH
Sbjct: 60 GLHYQIQ-HPQGKLVRVARGEIFDVAVDLRRNSPSFGQWVGCVLNDHNKRQLWIPAGFAH 118
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
GF L EV+YK TD+Y+ ++ + W D +I I W L T P +S KDQ
Sbjct: 119 GFAVLSPEAEVLYKATDYYAPSYERTLLWNDPAIGIDWSL--TTTPLLSLKDQ 169
>gi|237808785|ref|YP_002893225.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Tolumonas auensis DSM 9187]
gi|237501046|gb|ACQ93639.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Tolumonas auensis DSM 9187]
Length = 182
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 105/165 (63%), Gaps = 2/165 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V+I++ F D RG+F +T+ + EL + FVQDNHS S G +RGLH+Q
Sbjct: 7 SIPDVKIIEPAVFGDERGFFMETWQEQKFNELVCERRFVQDNHSKSRQ-GILRGLHYQ-T 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVR IAG +FD+AVDIRR+SPT+G V + +SA N Q+++P GFAHGF
Sbjct: 65 EQAQGKLVRVIAGEVFDVAVDIRRSSPTFGQSVGVLLSAENKRQLWVPEGFAHGFYVTTE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK T++Y+ + + W D ++I WPL+D PS+S KD
Sbjct: 125 TAEFVYKCTNYYNPSAEHSIRWNDPELNIQWPLVDGQQPSLSAKD 169
>gi|124265818|ref|YP_001019822.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylibium petroleiphilum
PM1]
gi|124258593|gb|ABM93587.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylibium petroleiphilum
PM1]
Length = 184
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 110/186 (59%), Gaps = 8/186 (4%)
Query: 1 MNINP-----VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIR 54
M ++P V + + F D+RG+ ++++ + + +G FV D HS S G +R
Sbjct: 1 MKVSPTALPEVLLFEPDMFRDARGFVVESFNQRAFEAAVGHAANFVLDVHSRS-QRGVLR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
GLH+QRPP+ QAKLVR G ++D+AVD+RR+S +G W +E+SA Q++IP GFAH
Sbjct: 60 GLHYQRPPHTQAKLVRVSVGSVYDVAVDLRRSSRCFGQWTGIELSAERAQQLWIPQGFAH 119
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
GF+ L + EV YK T++Y + + W D IDI WP LD I P +S KD P L Q
Sbjct: 120 GFLVLSESAEVQYKATNYYESHAEGAIRWDDPLIDIKWPALD-IQPLLSLKDAAAPTLAQ 178
Query: 175 IDSPFE 180
FE
Sbjct: 179 ASVLFE 184
>gi|327482466|gb|AEA85776.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas stutzeri DSM
4166]
Length = 181
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 109/173 (63%), Gaps = 6/173 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I V +L R F D RG+F ++++ + ++ +G FVQDNHS S +RGLH+Q
Sbjct: 6 LDIPEVLLLVPRVFGDERGFFFESFNQRTFEQAIGSPASFVQDNHSRSAR-NVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR + G ++D+AVDIRR+SPT+G WV +SA N Q++IP GFAHGF+ L
Sbjct: 65 IA-QPQGKLVRVVVGEVYDVAVDIRRSSPTFGKWVGAILSAENNHQLWIPQGFAHGFLVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD-QNLPF 171
E +YK TD+Y+ EH+ +AW D + I WPL PS+S KD Q LP
Sbjct: 124 SETAEFLYKTTDYYAPEHERCIAWNDPHLAIQWPLEQA--PSLSNKDSQGLPL 174
>gi|222109772|ref|YP_002552036.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Acidovorax ebreus TPSY]
gi|221729216|gb|ACM32036.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidovorax ebreus TPSY]
Length = 181
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 115/169 (68%), Gaps = 7/169 (4%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ + F D+RG+F ++++ K E G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPEVVLIEPQVFGDARGFFFESFNQKTFNEATGTNHQFVQDNHSRS-SQGVLRGLHYQ 64
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
+ P Q KLVR G+++D+AVDIR++SPT+G WV E+S +N Q+++P GFAHGF+
Sbjct: 65 IQQP--QGKLVRVARGKVWDVAVDIRKSSPTFGQWVGAELSEDNQHQLWVPPGFAHGFVV 122
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
L + + +YK TD+Y+ EH+ +AW D+++ I+WP+ +I P +S KDQ
Sbjct: 123 LSESADFLYKTTDYYAPEHERCIAWNDEALTISWPV--SITPILSAKDQ 169
>gi|285808321|gb|ADC35851.1| dTDP-4-dehydrorhamnose 35-epimerase [uncultured bacterium 92]
Length = 180
Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 106/175 (60%), Gaps = 3/175 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+++ + +++ + FED RG+F +TY S G+ Q+NHS S GT+RGLH QR
Sbjct: 8 LDLPDIILIEPKVFEDPRGFFMETYKSSDFTAAGITAPLKQENHSRSIR-GTLRGLHAQR 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KL+ + G IFD+A+DIRR SPT+G W + +S N Q++IP G+AHGF L
Sbjct: 67 APKAQGKLISVLEGEIFDVALDIRRESPTFGRWTTATLSRANRYQLFIPPGYAHGFAVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
EV+YK T+ Y+ E + GV W D + I WPL P +S +D++ P L +
Sbjct: 127 DVAEVVYKTTEEYAPELEYGVRWDDPELAIPWPLRGE--PILSSRDRSWPRLRDL 179
>gi|227874476|ref|ZP_03992651.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oribacterium sinus F0268]
gi|227839665|gb|EEJ50120.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oribacterium sinus F0268]
Length = 246
Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
+DSRG+F ++Y+ + +E GL FVQDN S S G +RGLHFQ+ Y Q KLVR + G
Sbjct: 69 QDSRGYFMESYNERDFQEQGLNLRFVQDNQSMSVK-GVLRGLHFQKQ-YPQGKLVRVLKG 126
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
R++D+AVD+R+NS TYG + +S N YIP GFAHGF+ L E YKVTDFY
Sbjct: 127 RVYDVAVDLRKNSKTYGKHFGITLSEENKKMFYIPEGFAHGFLVLSDTAEFAYKVTDFYH 186
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ G+AW D SI I WP L ++KD
Sbjct: 187 PGDEGGLAWNDPSIGIRWPELKGTYAGNAKKD 218
>gi|154505986|ref|ZP_02042724.1| hypothetical protein RUMGNA_03528 [Ruminococcus gnavus ATCC 29149]
gi|153793485|gb|EDN75905.1| hypothetical protein RUMGNA_03528 [Ruminococcus gnavus ATCC 29149]
Length = 183
Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 106/175 (60%), Gaps = 2/175 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I ++++ F D RG+F +TY+ KE G+ FVQDN S S G +RGLHFQ
Sbjct: 11 IEGLKVITPAVFGDERGYFMETYNYNDYKEAGIDMEFVQDNQSSS-KKGVLRGLHFQ-IN 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q KLVR ++G +FD+AVD+R+ S TYG W + +SA N Q +IP FAHGF+ L +
Sbjct: 69 YPQDKLVRVVSGEVFDVAVDLRKGSKTYGQWYGVVLSAENKKQFFIPKDFAHGFVVLSDS 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E YK TDFY + G+AW D I I WP+ + + ++SEKDQ + +++
Sbjct: 129 AEFAYKCTDFYHPNDEGGLAWNDPDIGIEWPIPEDMELTISEKDQKWGGIKELNK 183
>gi|87201249|ref|YP_498506.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Novosphingobium
aromaticivorans DSM 12444]
gi|87136930|gb|ABD27672.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Novosphingobium
aromaticivorans DSM 12444]
Length = 181
Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 105/161 (65%), Gaps = 3/161 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+L+ R F D RG+F ++++++ + GL FVQDNHS S G +RG+HFQ P Q K
Sbjct: 13 VLEPRVFGDERGFFMESWNAEAFAKAGLDLPFVQDNHSRS-QKGVLRGMHFQNP-GPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR + G +FD VD+R++SPT+G W + +SA N ++P GFAHGF+TLE +T+ +Y
Sbjct: 71 LVRVVRGAVFDAVVDLRKSSPTFGKWTGVVLSAENKRMFWVPEGFAHGFLTLEDDTDFLY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
K T Y+ +H+ +AW D + I WP LD I P +S KD +
Sbjct: 131 KCTAPYAPQHECSLAWDDPDVGIDWP-LDGIEPKLSAKDAD 170
>gi|301162535|emb|CBW22081.1| putative LPS biosynthesis related dTDP-4-dehydrorhamnose
3,5-epimerase [Bacteroides fragilis 638R]
Length = 195
Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 113/187 (60%), Gaps = 12/187 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE------LGLQDVFVQDNHSFSFDCGTIRG 55
I V +++ + F+DSRG+F +++S + E G +FVQDN S S G +RG
Sbjct: 7 TIEGVVVIEPKVFKDSRGYFVESFSQREFDEKVAIPQYGKPILFVQDNESMS-SYGVMRG 65
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LHFQ PP+ Q+KLVRC+ G++ D+AVDIR+ SPTYG V++E++ +N Q ++P GFAHG
Sbjct: 66 LHFQLPPFTQSKLVRCVRGKVLDVAVDIRKGSPTYGHHVAVELTEDNHRQFFVPRGFAHG 125
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLN 173
F L YK +FY+ + D G++ +D+S+ I W P+ IL SEKD L
Sbjct: 126 FAVLSETAVFQYKCDNFYAPQADGGISIKDESLGIDWCIPMDKVIL---SEKDTQHECLK 182
Query: 174 QIDSPFE 180
PF+
Sbjct: 183 DFTPPFD 189
>gi|121533495|ref|ZP_01665323.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermosinus carboxydivorans
Nor1]
gi|121308054|gb|EAX48968.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermosinus carboxydivorans
Nor1]
Length = 186
Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 108/172 (62%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +++ + D+RG+F +T+++ +E GL + FVQDN SFS G +RGLHFQ P Q
Sbjct: 11 VLLIEPDVYGDNRGYFLETWNAARYREYGLPEKFVQDNLSFS-RRGVLRGLHFQNP-NPQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV I G +FD+AVDIR SPT+G WV + +S++N Q+YIP GFAHGF L
Sbjct: 69 GKLVYVIQGEVFDVAVDIRPGSPTFGQWVGVTLSSDNKRQLYIPEGFAHGFCVLSDTALF 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
YK TDFY+ + + G+ W D I I WP+ + P +S+KD+ P L I S
Sbjct: 129 AYKCTDFYNPQAEGGIIWNDFDIGIAWPVSE---PIISDKDKANPRLRDIPS 177
>gi|239993213|ref|ZP_04713737.1| dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase [Alteromonas macleodii
ATCC 27126]
Length = 181
Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 112/173 (64%), Gaps = 3/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V+I++ + F D RG+F +T+ + K+ FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPKVFGDERGFFLETFRTDWFKKECADVDFVQDNHSKS-SQGILRGLHYQME 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR ++G ++D+AVD+R++SPTYG WV + +SA N Q+++P GFAHGF
Sbjct: 66 Q-TQGKLVRVVSGEVYDVAVDMRKDSPTYGKWVGVTLSAENKRQLWVPAGFAHGFYVTSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ-NLPFLN 173
+ E +YK TD+Y E + V + D +++I WPL++ PS+S KD+ L F+N
Sbjct: 125 SAEFVYKCTDYYHPESEISVKYDDPTLNIDWPLVNGEKPSLSGKDEAGLAFVN 177
>gi|302348457|ref|YP_003816095.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidilobus saccharovorans
345-15]
gi|302328869|gb|ADL19064.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidilobus saccharovorans
345-15]
Length = 185
Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 111/174 (63%), Gaps = 4/174 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V ++K + F D RG+F +T+ +K ++ G++ VQ+N S+S G IRGLH+QR
Sbjct: 8 LDIPDVVLVKPKVFRDQRGYFMETFVAKAFEQAGVKFNVVQENQSYS-RRGVIRGLHYQR 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AQAK+VR + G I+D+AVDIR SPT+G V++ +S +NG +YIP GFAHGF L
Sbjct: 67 GQWAQAKIVRAVKGEIYDVAVDIRPWSPTFGKHVAVRLSEDNGYALYIPRGFAHGFQVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
V+Y V + Y+ + + G+ W D I I+WP+ +L SEKD P L +
Sbjct: 127 EYAIVVYLVDNDYAPQAEGGIRWDDSDIAISWPISGPVL---SEKDARWPTLRE 177
>gi|227534051|ref|ZP_03964100.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|227188323|gb|EEI68390.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
Length = 195
Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 109/179 (60%), Gaps = 1/179 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V++++T F D+RG+F++TY+ + E G+ + F QDN S S + G +RGLH+Q
Sbjct: 15 LKDVKLVETDVFGDNRGFFTETYTREKFIEAGITNDFNQDNQSLSAEAGVLRGLHYQYGK 74
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLVR + G + D+ VDIR+ SPTYG W +S N Q+ +P GFAHGF+TL N
Sbjct: 75 DAQTKLVRVVTGVVEDVLVDIRKGSPTYGQWEGYILSEFNHRQLLVPKGFAHGFITLTNN 134
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YKV +Y+ + D G+A+ D + I WP+ L +SEKD + P L D+ F Y
Sbjct: 135 VNFCYKVEGYYAPDADRGIAFDDPDLGIDWPMSTDHL-IMSEKDLHHPQLKDADNNFVY 192
>gi|75909560|ref|YP_323856.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anabaena variabilis ATCC
29413]
gi|75703285|gb|ABA22961.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anabaena variabilis ATCC
29413]
Length = 181
Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/167 (47%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSK-LLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ-- 59
I+ + +L+ + F DSRG+F ++Y+ + +LG+ FVQDNHSFS +RGLH+Q
Sbjct: 8 ISDILLLEPQVFTDSRGFFFESYNQQNFTDKLGITVNFVQDNHSFS-QHNVLRGLHYQII 66
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+P Q KLVR I G IFD+AVDIR++SPT+G WV E+SA N Q++IP GFAHGF+ L
Sbjct: 67 QP---QGKLVRAIVGTIFDVAVDIRKSSPTFGQWVGYELSAENKRQLWIPPGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
EV+YK TD+Y+ D + W D + I WPL + P +S KD
Sbjct: 124 SEVAEVVYKTTDYYAPGGDRTILWNDPDLAINWPLKEP--PILSAKD 168
>gi|312113624|ref|YP_004011220.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodomicrobium vannielii ATCC
17100]
gi|311218753|gb|ADP70121.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodomicrobium vannielii ATCC
17100]
Length = 183
Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 106/172 (61%), Gaps = 3/172 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ F D RG+F++T+ ++ + GL FVQ + S + GT+RG+HFQ PP+ + K
Sbjct: 13 MIEPEPFRDERGFFARTFCTREFEARGLVCNFVQHSISSTIRKGTVRGMHFQTPPHGEVK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
+V C G IFD+ VD+RR +PT+ W E++A N ++YIP GFAHGF +L + EV Y
Sbjct: 73 VVTCTRGAIFDVIVDLRRAAPTFLRWQGFELTAENRRRLYIPEGFAHGFQSLTDDVEVSY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
++ FY+ E GV D I I WPL + S+SEKD+N P N +PF
Sbjct: 133 LISAFYAPESAGGVPHDDPLIGIEWPL---SISSISEKDRNWPPFNASAAPF 181
>gi|311109417|ref|YP_003982270.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Achromobacter xylosoxidans
A8]
gi|310764106|gb|ADP19555.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Achromobacter xylosoxidans
A8]
Length = 180
Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 111/175 (63%), Gaps = 6/175 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +L+ R D RG+F ++++ + + GLQ FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVLLLEPRVLGDERGFFFESFNQAVFEAATGLQRNFVQDNHSRSAR-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KL+R AG IFD+AVD+RR+SP++G WV +SA N Q++IP GFAHGF+TL
Sbjct: 65 VE-QPQGKLMRVCAGEIFDVAVDLRRDSPSFGQWVGTLLSAENKRQVWIPEGFAHGFLTL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN-LPFLN 173
EV+YK TD+Y+ +H+ + W D + I WP P +SEKD+N PF +
Sbjct: 124 SDYAEVLYKTTDYYAPQHERCIRWDDPQLAIAWPCQQP--PLLSEKDRNGAPFAD 176
>gi|206601950|gb|EDZ38432.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Leptospirillum sp. Group II
'5-way CG']
Length = 183
Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 101/160 (63%), Gaps = 5/160 (3%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F +++ +K LG+ +FVQDNHS S G +RGLHFQ+ + Q KLVR ++G
Sbjct: 21 DERGFFLESFHAKKFAALGIPQLFVQDNHSRS-ARGVLRGLHFQKR-HPQGKLVRVLSGS 78
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R SPT+G W L +SA + +Y+P G AHGF+ LE TE+ YK TDFY
Sbjct: 79 LFDVAVDLRHGSPTFGHWFGLTLSAGDPEFLYLPEGMAHGFLALEDRTELFYKCTDFYDP 138
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ G+ W D +I I WP ++L S KD P L +I
Sbjct: 139 ADEGGLRWNDPAIGIAWPERPSVL---SPKDAAFPVLAEI 175
>gi|294783375|ref|ZP_06748699.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 1_1_41FAA]
gi|294480253|gb|EFG28030.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 1_1_41FAA]
Length = 187
Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 112/174 (64%), Gaps = 6/174 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + +++ + FEDSRG+F ++Y+ KELG+ ++FVQDN S S G +RGLHFQ+
Sbjct: 8 IKNLLLIEPKVFEDSRGFFIESYNYNTFKELGINNIFVQDNFSKS-SKGVLRGLHFQKGE 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQAKLV + G + D+ VD+R++S T+G +E++ N ++IP GFAHGF+TLE N
Sbjct: 67 YAQAKLVNVLRGAVLDVTVDLRKDSETFGKCFIIELNEKNKRMLFIPRGFAHGFLTLEDN 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS----VSEKD-QNLPF 171
TE YK +FY+ + + G+ W D ++I W L + +SEKD +N+ F
Sbjct: 127 TEFFYKCDNFYNPKSEVGIIWNDIDLNIDWNLDKYNIKEDELIISEKDKKNITF 180
>gi|46445758|ref|YP_007123.1| dTDP-4-dehydrorhamnose 3,5-epimerase, rfbC [Candidatus
Protochlamydia amoebophila UWE25]
gi|46399399|emb|CAF22848.1| probable dTDP-4-dehydrorhamnose 3,5-epimerase, rfbC [Candidatus
Protochlamydia amoebophila UWE25]
Length = 184
Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 107/170 (62%), Gaps = 5/170 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + ++++K F+D+RG+F +++ L +++G+Q+ F+QDNHSFS G IRG+HFQ
Sbjct: 6 LQLKGLKLVKPNVFKDNRGFFLESFQQPLYQKMGIQETFLQDNHSFS-QKGCIRGMHFQS 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P QAKLVR G+I+D+AVDIR SPT+G W + + Q++IP GFAHGF L
Sbjct: 65 FP-GQAKLVRVAVGKIYDVAVDIRPESPTFGQWEGIILDDKKHHQLFIPVGFAHGFCVLS 123
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
V+YKV+ Y ++ G W D ++I WP+ P VSE+D+ P
Sbjct: 124 QEAHVMYKVSTPYDPLYEKGFRWNDSQLNIQWPIEQ---PIVSERDKQSP 170
>gi|189500820|ref|YP_001960290.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium phaeobacteroides
BS1]
gi|189496261|gb|ACE04809.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium phaeobacteroides
BS1]
Length = 201
Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/180 (42%), Positives = 114/180 (63%), Gaps = 3/180 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V + + R F DSRG+F +++ +L+E + FVQDN S S G +RGLHFQ+PP
Sbjct: 10 IPDVLVFEPRVFGDSRGYFFESFRKDILQEHVGKVDFVQDNQSKS-GYGVLRGLHFQKPP 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q+KLVR IAG + D+AVDIR SP YG V++++ + ++IP GFAHGF+ L
Sbjct: 69 FTQSKLVRVIAGAVLDVAVDIREGSPWYGRHVAVKLDSERNNMLWIPQGFAHGFIVLSKE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK ++Y+ ++D+G+ W DK++ I W L + + VS+KD +LPFL + F YD
Sbjct: 129 AIFSYKCDNYYAPDYDAGIRWNDKALGIDWTLPEEDI-QVSDKDASLPFLKEA-YHFSYD 186
>gi|301060779|ref|ZP_07201594.1| dTDP-4-dehydrorhamnose 3,5-epimerase [delta proteobacterium NaphS2]
gi|300445176|gb|EFK09126.1| dTDP-4-dehydrorhamnose 3,5-epimerase [delta proteobacterium NaphS2]
Length = 187
Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 104/171 (60%), Gaps = 5/171 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +++ R FED RG+F +T+ S+ ++G+ F+QDNHS S GT+RGLH+Q Q
Sbjct: 13 VILIEPRVFEDDRGFFMETFHSEKYAKMGMSKPFLQDNHSHS-RRGTLRGLHYQLE-NPQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV + G IFD+AVDIR SP +G W +S N Q+Y+P GFAHGF L +V
Sbjct: 71 GKLVYVVRGEIFDVAVDIRAGSPDFGKWTGNLLSEKNRRQLYVPGGFAHGFCVLSETADV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
IYK TD Y+ + GV W D +++I WPL IL S+KD P L ID
Sbjct: 131 IYKCTDHYAPGDEYGVFWADNAVNIKWPLARPIL---SKKDSENPLLADID 178
>gi|115374685|ref|ZP_01461963.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stigmatella aurantiaca
DW4/3-1]
gi|310820811|ref|YP_003953169.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stigmatella aurantiaca
DW4/3-1]
gi|115368353|gb|EAU67310.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stigmatella aurantiaca
DW4/3-1]
gi|309393883|gb|ADO71342.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stigmatella aurantiaca
DW4/3-1]
Length = 184
Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 112/183 (61%), Gaps = 8/183 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V +++ + F D RG+F +T+ +K + G+ FVQDN+S S GT+RGLHFQ P
Sbjct: 8 IPGVLLIEPKVFGDDRGFFLETFHAKRYADAGIPGPFVQDNYSRSAR-GTLRGLHFQEP- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLV+ +AG ++D+AVD+RR SPT+G WV +E+SA N Q+++P GFAHGF
Sbjct: 66 QAQGKLVQVVAGAVYDVAVDVRRGSPTFGKWVGVELSAENRRQLWVPPGFAHGFCVTSEF 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF--E 180
+ YK T Y+ E++ + W D + I WPL + P +S KD P L D+P
Sbjct: 126 ADFQYKCTALYAPENERSILWNDPELAIPWPL--SGAPKLSAKDAAAPRLK--DAPLLPA 181
Query: 181 YDG 183
Y+G
Sbjct: 182 YEG 184
>gi|124515990|gb|EAY57499.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Leptospirillum rubarum]
Length = 183
Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 107/175 (61%), Gaps = 8/175 (4%)
Query: 4 NPVR-ILKTRK--FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
P+R +L+ R D RG+F +++ +K LG+ +FVQDNHS S G +RGLHFQ+
Sbjct: 6 TPIRGLLRIRPDVHGDERGFFLESFHAKKFAALGIPHLFVQDNHSRS-ARGVLRGLHFQK 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+ Q KLVR ++G +FD+AVD+R SPT+G W L +SA + +Y+P G AHGF+ LE
Sbjct: 65 R-HPQGKLVRVLSGSLFDVAVDLRHGSPTFGHWFGLTLSAGDPEFLYLPEGMAHGFLALE 123
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
TE+ YK TDFY + G+ W D +I I WP +L S KD P L +I
Sbjct: 124 DRTELFYKCTDFYDPADEGGLRWNDPAIGIAWPETPAVL---SPKDAAFPVLAKI 175
>gi|291525903|emb|CBK91490.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium rectale DSM
17629]
Length = 202
Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 103/163 (63%), Gaps = 2/163 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ D+RG+F +TY+S ++E G+ VFVQDN S S G +RGLHFQ+
Sbjct: 12 GIEGLCIIEPTVHGDNRGYFMETYNSNDMQEAGIDRVFVQDNQSCSTK-GVLRGLHFQKE 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y QAKLVR + G +FD+AVD+R +S TYG W +E++ N Q IP GFAHGF+ L
Sbjct: 71 -YPQAKLVRAVKGSVFDVAVDLRSDSKTYGKWFGVELTEENKKQFLIPEGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSE 164
E YKVTDF+ + +SG+AW D +I I WP L P ++
Sbjct: 130 VAEFCYKVTDFWHLGDESGLAWNDPAIGIEWPQLVGEYPGSAD 172
>gi|17231981|ref|NP_488529.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nostoc sp. PCC 7120]
gi|17133625|dbj|BAB76188.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nostoc sp. PCC 7120]
Length = 181
Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 110/173 (63%), Gaps = 10/173 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSK-LLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ-- 59
I + +L+ + F DSRG F ++Y+ + +LG+ FVQDNHSFS +RGLH+Q
Sbjct: 8 IPAISLLEPQVFSDSRGLFFESYNQQNFTDKLGITVNFVQDNHSFS-QHNVLRGLHYQII 66
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+P Q KLVR + G IFD+AVDIR++SP++G WV E+SA N Q+++P GFAHGF+ L
Sbjct: 67 QP---QGKLVRAVVGTIFDVAVDIRKSSPSFGQWVGYELSAENKRQLWVPPGFAHGFLVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD-QNLPF 171
EVIYK TD+Y+ D + W D + I WPL + P +S KD Q PF
Sbjct: 124 SEVAEVIYKTTDYYAPGGDRTILWNDPDLAINWPLKEP--PILSAKDSQGQPF 174
>gi|46015557|pdb|1RTV|A Chain A, Rmlc (Dtdp-6-Deoxy-D-Xylo-4-Hexulose 3,5-Epimerase)
Crystal Structure From Pseudomonas Aeruginosa, Apo
Structure
gi|112491446|pdb|2IXJ|A Chain A, Rmlc P Aeruginosa Native
gi|118138550|pdb|2IXH|A Chain A, Rmlc P Aeruginosa With Dtdp-Rhamnose
gi|118138551|pdb|2IXH|B Chain B, Rmlc P Aeruginosa With Dtdp-Rhamnose
Length = 184
Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 105/169 (62%), Gaps = 5/169 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + R F D RG+F ++Y+ + +E V FVQDNHS S G +RGLH+Q
Sbjct: 9 LAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSAR-GVLRGLHYQ 67
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
AQ KLVR G +FD+AVD+RR SPT+G WV +SA N Q++IP GFAHGF+ L
Sbjct: 68 -IRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVL 126
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK TDF++ EH+ + W D + I WPL D P +SEKD+
Sbjct: 127 SEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWPLQDA--PLLSEKDRQ 173
>gi|114563991|ref|YP_751505.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella frigidimarina
NCIMB 400]
gi|114335284|gb|ABI72666.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella frigidimarina
NCIMB 400]
Length = 182
Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 107/167 (64%), Gaps = 6/167 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ F D RG+F +T+S + +EL G FVQDNHS S G +RGLH+Q
Sbjct: 8 IADVKIIEPAVFGDERGFFMETWSQQKFEELVTGKPTKFVQDNHSKS-KKGILRGLHYQT 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR ++G +FD+AVDIR+ SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 67 KN-TQGKLVRVVSGEVFDVAVDIRKGSPTFGQWVGVYLSAENKRQLWVPEGFAHGFYVTS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E +YK TD+Y+ + + +AW D I I WP+ +T P +SEKD+
Sbjct: 126 EEAEFVYKCTDYYNPKAELSIAWNDSDIGIKWPISNT--PLLSEKDK 170
>gi|330505516|ref|YP_004382385.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas mendocina NK-01]
gi|328919802|gb|AEB60633.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas mendocina NK-01]
Length = 182
Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 107/164 (65%), Gaps = 4/164 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ + F D RG+F ++++++ E G+ FVQDNHS S G +RGLH+Q A
Sbjct: 11 VLILEPQVFGDERGFFYESFNARRFAEATGVTRDFVQDNHSRSAR-GVLRGLHYQLQQ-A 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR AG ++D+AVD+RR+SP +G WV + +SA N Q+++P GFAHGF+ L E
Sbjct: 69 QGKLVRVSAGEVYDVAVDVRRSSPNFGKWVGVHLSAENKRQLWVPEGFAHGFLVLSEYAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+YK TD+Y+ H+ + W D+ + I WP L+ + P +S KDQ
Sbjct: 129 FLYKTTDYYAPAHERCIRWDDQQLAIDWP-LEGLTPQLSAKDQQ 171
>gi|325922242|ref|ZP_08184027.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas gardneri ATCC
19865]
gi|325547276|gb|EGD18345.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas gardneri ATCC
19865]
Length = 193
Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 3/167 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ + D+RGWF++ + ++ + + GL D FVQ N+SF+ GT+RG+H+Q PP A+ K
Sbjct: 13 VIEPEQRGDARGWFARVFCTQEMAQAGLVDQFVQVNNSFNAQAGTLRGMHYQLPPAAEVK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
+VRCI G ++D VD+R +S TY W E++A N L +Y+P GFAHGF+TL+ TE Y
Sbjct: 73 IVRCIRGALWDAIVDLRPDSRTYLQWYGTELTAENRLALYVPRGFAHGFITLQPQTEAFY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
Y+ + + G+ W D + + WPL + VS+KD P N+
Sbjct: 133 FANAMYTPQAERGLRWNDPRLGLQWPLEPQL---VSDKDAAWPDFNE 176
>gi|297569781|ref|YP_003691125.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfurivibrio alkaliphilus
AHT2]
gi|296925696|gb|ADH86506.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfurivibrio alkaliphilus
AHT2]
Length = 346
Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/141 (52%), Positives = 93/141 (65%), Gaps = 4/141 (2%)
Query: 34 GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCW 93
GL+ FVQDNHS S G +RGLH+Q PP AQ KLVR + G +FD+AVDIR NSPT+G W
Sbjct: 205 GLRPNFVQDNHSKS-QKGVLRGLHYQLPPKAQGKLVRVVQGEVFDVAVDIRHNSPTFGRW 263
Query: 94 VSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP 153
V +SA+N Q++IP GFAHG +TL E +YK TDFY+ EH+ +AW D I I W
Sbjct: 264 VGQRLSADNKRQLWIPEGFAHGVLTLTPTAEFLYKTTDFYAPEHERCIAWNDPDIGIDWG 323
Query: 154 LLDTILPSVSEKDQN-LPFLN 173
D P +S KD+ +P N
Sbjct: 324 YEDA--PLLSAKDRECVPLRN 342
>gi|313201256|ref|YP_004039914.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylovorus sp. MP688]
gi|312440572|gb|ADQ84678.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylovorus sp. MP688]
Length = 181
Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/170 (46%), Positives = 112/170 (65%), Gaps = 8/170 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ-RPPY 63
V I + + F D+RG+F ++Y+ + L GL+ FVQDNHS S G +RGLH+Q R P
Sbjct: 11 VLIFEPKVFGDARGFFFESYNQNTFEALTGLKRTFVQDNHSASAK-GVLRGLHYQIRQP- 68
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
Q KLVR +AG + D+AVD+R+NSP++G W S +SA N Q+++P GFAHGF+ L
Sbjct: 69 -QGKLVRVVAGEVLDVAVDMRKNSPSFGRWTSAILSAENRRQMWVPEGFAHGFVVLSEFA 127
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD-QNLPFL 172
E +YK TDFY+ EH+ + W D +++I W L T P++S KD + L FL
Sbjct: 128 EFLYKTTDFYAPEHECCIRWDDPTLNIDWQL--TAPPALSAKDSRGLDFL 175
>gi|255020605|ref|ZP_05292668.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidithiobacillus caldus ATCC
51756]
gi|254969990|gb|EET27489.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidithiobacillus caldus ATCC
51756]
Length = 182
Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 109/177 (61%), Gaps = 4/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ- 59
+ I V ++ R F D+RG+F ++++ + GL FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPEVLLITPRVFGDARGFFLESWNRRSFAAAGLDLDFVQDNHSRS-QRGVLRGLHYQI 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
R P Q KLVR +AG +FD+AVD+RR+SP +G WV +SA+N +++P GFAHGF+ L
Sbjct: 65 RQP--QGKLVRVVAGEVFDVAVDLRRSSPHFGRWVGARLSADNAQMLWVPPGFAHGFLVL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD+Y E + + W D S+ + WPL P+++ KD L Q++
Sbjct: 123 SEQADFLYKTTDYYLPEAERCLRWDDPSVGVQWPLAPGSQPTLAAKDAAGSLLAQLE 179
>gi|15679778|ref|NP_276896.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanothermobacter
thermautotrophicus str. Delta H]
gi|74548927|sp|O27818|RMLC_METTH RecName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; AltName:
Full=Thymidine diphospho-4-keto-rhamnose 3,5-epimerase;
AltName: Full=dTDP-4-keto-6-deoxyglucose 3,5-epimerase;
AltName: Full=dTDP-6-deoxy-D-xylo-4-hexulose
3,5-epimerase; AltName: Full=dTDP-L-rhamnose synthase
gi|12084451|pdb|1EP0|A Chain A, High Resolution Crystal Structure Of
Dtdp-6-Deoxy-D-Xylo-4- Hexulose 3,5-Epimerase From
Methanobacterium Thermoautotrophicum
gi|12084452|pdb|1EPZ|A Chain A, Crystal Structure Of Dtdp-6-Deoxy-D-Xylo-4-Hexuloase 3,5-
Epimerase From Methanobacterium Thermoautotrophicum With
Bound Ligand.
gi|2622921|gb|AAB86256.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 185
Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 104/163 (63%), Gaps = 6/163 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ + D RG+F +T++ + +E GL+ FVQDN S S G +RGLHFQR Q K
Sbjct: 16 IIEPEVYTDERGYFMETFNEAIFQENGLEVRFVQDNESMSVR-GVLRGLHFQREK-PQGK 73
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR I G IFD+AVD+R+NS TYG W + +S N + +IP GFAHGF+ L V Y
Sbjct: 74 LVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNY 133
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQN 168
K T+ Y E+DSG+ W D I I WPL +D ++ +SEKD+N
Sbjct: 134 KCTELYHPEYDSGIPWDDPDIGIDWPLEMVDDLI--ISEKDRN 174
>gi|254243955|ref|ZP_04937277.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa 2192]
gi|296392019|ref|ZP_06881494.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa PAb1]
gi|126197333|gb|EAZ61396.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa 2192]
Length = 181
Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 105/169 (62%), Gaps = 5/169 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + R F D RG+F ++Y+ + +E V FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSAR-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
AQ KLVR G +FD+AVD+RR SPT+G WV +SA N Q++IP GFAHGF+ L
Sbjct: 65 -IRQAQGKLVRATLGEVFDVAVDLRRGSPTFGHWVGERLSAENKRQMWIPAGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK TDF++ EH+ + W D + I WPL D P +SEKD+
Sbjct: 124 SEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWPLQDA--PLLSEKDRQ 170
>gi|320107280|ref|YP_004182870.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Terriglobus saanensis SP1PR4]
gi|319925801|gb|ADV82876.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Terriglobus saanensis SP1PR4]
Length = 199
Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 107/179 (59%), Gaps = 8/179 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V++++ D RGWF++ ++++ +E GL FVQDN S S G +RGLH+Q Q
Sbjct: 11 VKLIEPTLHRDGRGWFAEAFNARSFREQGLPSDFVQDNQSMS-QRGVLRGLHYQLG-QPQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEI---SANNGLQ-IYIPTGFAHGFMTLEM 121
KLVRC++G I+D+AVD+RR SP +G W + ++ LQ ++IP GF HGF+ L
Sbjct: 69 GKLVRCVSGHIWDVAVDLRRTSPDFGKWAGFHLRPLTSEGKLQMLWIPEGFGHGFLVLSE 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQIDSP 178
E++YK T+ Y + D V W D I I WPL LD + P VS KD PFLN + P
Sbjct: 129 TAELLYKTTNHYFPQGDRAVRWNDPEIAIEWPLAELDGLEPIVSAKDTVAPFLNSAELP 187
>gi|15600357|ref|NP_253851.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa PAO1]
gi|107104265|ref|ZP_01368183.1| hypothetical protein PaerPA_01005339 [Pseudomonas aeruginosa PACS2]
gi|116053311|ref|YP_793635.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218894264|ref|YP_002443134.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa
LESB58]
gi|254238136|ref|ZP_04931459.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa C3719]
gi|313110227|ref|ZP_07796123.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa 39016]
gi|81622016|sp|Q9HU21|RMLC_PSEAE RecName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; AltName:
Full=Thymidine diphospho-4-keto-rhamnose 3,5-epimerase;
AltName: Full=dTDP-4-keto-6-deoxyglucose 3,5-epimerase;
AltName: Full=dTDP-6-deoxy-D-xylo-4-hexulose
3,5-epimerase; AltName: Full=dTDP-L-rhamnose synthase
gi|9951466|gb|AAG08549.1|AE004929_4 dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa PAO1]
gi|27262962|emb|CAC82199.1| dTDP-4-keto-6-deoxy-D-glucose 3,5 epimerase [Pseudomonas
aeruginosa]
gi|115588532|gb|ABJ14547.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126170067|gb|EAZ55578.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa C3719]
gi|218774493|emb|CAW30310.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa
LESB58]
gi|310882625|gb|EFQ41219.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa 39016]
Length = 181
Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 105/169 (62%), Gaps = 5/169 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + R F D RG+F ++Y+ + +E V FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSAR-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
AQ KLVR G +FD+AVD+RR SPT+G WV +SA N Q++IP GFAHGF+ L
Sbjct: 65 -IRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK TDF++ EH+ + W D + I WPL D P +SEKD+
Sbjct: 124 SEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWPLQDA--PLLSEKDRQ 170
>gi|326318817|ref|YP_004236489.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323375653|gb|ADX47922.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 181
Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 113/183 (61%), Gaps = 12/183 (6%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIR 54
MN+ P RI L+ + F D+RG+F ++++ + E G + FVQDNHS S G +R
Sbjct: 1 MNVLPTRIPDVVVLEPKVFGDARGFFFESFNQRAFDEATGSRHAFVQDNHSRS-ARGVLR 59
Query: 55 GLHFQ-RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFA 113
GLH+Q R P Q KLVR + G +FD+AVD+RR+SPT+G WV E+S N Q+++P GFA
Sbjct: 60 GLHYQIRQP--QGKLVRVVRGTVFDVAVDLRRSSPTFGQWVGEELSEENQRQMWVPPGFA 117
Query: 114 HGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
HGF+ L + + +YK TD+Y+ EH+ +AW D I I W PS+S KD L
Sbjct: 118 HGFVVLSESADFLYKTTDYYAPEHERCIAWNDPGIGIDWRFAGE--PSLSAKDAKGTSLR 175
Query: 174 QID 176
+ +
Sbjct: 176 EAE 178
>gi|112491444|pdb|2IXI|A Chain A, Rmlc P Aeruginosa With Dtdp-Xylose
gi|112491445|pdb|2IXI|B Chain B, Rmlc P Aeruginosa With Dtdp-Xylose
gi|114794832|pdb|2IXK|A Chain A, Rmlc P Aeruginosa With Dtdp-4-Keto Rhamnnose (The Product
Of The Reaction)
gi|114794833|pdb|2IXK|B Chain B, Rmlc P Aeruginosa With Dtdp-4-Keto Rhamnnose (The Product
Of The Reaction)
Length = 184
Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 105/169 (62%), Gaps = 5/169 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + R F D RG+F ++Y+ + +E V FVQDNHS S G +RGLH+Q
Sbjct: 9 LAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSAR-GVLRGLHYQ 67
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
AQ KLVR G +FD+AVD+RR SPT+G WV +SA N Q++IP GFAHGF+ L
Sbjct: 68 -IRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVL 126
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK TDF++ EH+ + W D + I WPL D P +SEKD+
Sbjct: 127 SEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWPLQDA--PLLSEKDRQ 173
>gi|306845701|ref|ZP_07478270.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella sp. BO1]
gi|306274022|gb|EFM55849.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella sp. BO1]
Length = 174
Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 107/172 (62%), Gaps = 3/172 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NI+ ++ + +D RGWF++ Y E L+ F Q + SFS + GT+RGLH+Q
Sbjct: 6 LNIDGAWSIEPERLKDERGWFARVYCEAAFAERKLETHFPQHSLSFSREKGTLRGLHYQN 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ + KLV C+ G ++D+ VDIR +SPTY W +E+SA NG Q+YIP G AHGF TL
Sbjct: 66 EPHCETKLVTCLQGIVWDVLVDIRPHSPTYRRWAGVELSAENGAQLYIPEGCAHGFQTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ + Y ++ Y+ +H +G+ + D ++DI WP ++ +S+KD PFL
Sbjct: 126 DDVLIRYMISKPYAPDHAAGIRYDDPALDIPWPDKPSV---ISQKDLGWPFL 174
>gi|120555539|ref|YP_959890.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Marinobacter aquaeolei VT8]
gi|120325388|gb|ABM19703.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Marinobacter aquaeolei VT8]
Length = 186
Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 110/176 (62%), Gaps = 4/176 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V IL+ R F D RGWF ++++++ + +G FVQDNHS S G +RG+HFQ
Sbjct: 8 LEGVLILEPRVFGDDRGWFYESFNAERFADAVGKPVAFVQDNHSRSAK-GVLRGIHFQTG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVR G +FDIAVD+R++SPT+G W + +SA N Q+++P GF H F+
Sbjct: 67 RAAQGKLVRATFGEVFDIAVDLRKSSPTFGQWTGVLLSAENKRQLWVPAGFGHAFLVTSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
EV YKV ++S EH+ + W D ++ + WP + + +SEKD++ P LN +++
Sbjct: 127 VAEVQYKVDAYWSAEHERSLRWDDPAVAVEWPEVGEV--QLSEKDRHAPDLNVLNA 180
>gi|150017459|ref|YP_001309713.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium beijerinckii
NCIMB 8052]
gi|149903924|gb|ABR34757.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium beijerinckii
NCIMB 8052]
Length = 191
Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 106/174 (60%), Gaps = 2/174 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ + F D+RG+F + Y+ K + G FVQDN S S G +RGLHFQR
Sbjct: 11 IKGLYIIEPKVFGDNRGYFMENYNKKQFEAAGFNMNFVQDNESKSVK-GVLRGLHFQRE- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
++Q KL+R G +FD+AVD+R S TYG W + +S N Q Y+P GFAHGF+ +
Sbjct: 69 HSQGKLIRVTKGEVFDVAVDLRNGSKTYGNWEGIVLSEENKKQFYVPEGFAHGFLVISNE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ YK TD+Y+ E++ G+ W D I++ WPL + +SEKD+ L+++D
Sbjct: 129 AILNYKCTDYYAKEYECGIMWNDPDINVNWPLENIENVILSEKDKANSMLSELD 182
>gi|78213549|ref|YP_382328.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. CC9605]
gi|78198008|gb|ABB35773.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. CC9605]
Length = 193
Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 101/162 (62%), Gaps = 4/162 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
++ + F D RGWF ++++ + + +G +F QDNHS S G +RGLH+Q P QA
Sbjct: 19 LITPQAFGDDRGWFYESWNQRKFDDAVGESVLFSQDNHSRSIQ-GVLRGLHYQLAPEPQA 77
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR G I+D+AVDIRRNSPT+G WV E+SA N Q++IP GFAHGF+TL EV
Sbjct: 78 KLVRATVGAIYDVAVDIRRNSPTFGAWVGAELSAENKCQLWIPEGFAHGFLTLSDVAEVQ 137
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKD 166
YK F++ + G+ W D + I WP+ L S+S KD
Sbjct: 138 YKARGFWNKSCERGIIWNDSDLAIAWPIDRLQGAEVSLSGKD 179
>gi|302669916|ref|YP_003829876.1| dTDP-4-dehydrorhamnose 3,5-epimerase RfbC2 [Butyrivibrio
proteoclasticus B316]
gi|302394389|gb|ADL33294.1| dTDP-4-dehydrorhamnose 3,5-epimerase RfbC2 [Butyrivibrio
proteoclasticus B316]
Length = 181
Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 101/164 (61%), Gaps = 2/164 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I ++++ + F DSRG+F +TY+ E G+ FVQDN S S G +RGLHFQ+
Sbjct: 11 IEGLKVITPQVFGDSRGYFVETYNKNDFVEAGITCEFVQDNQSAS-KRGVLRGLHFQKE- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVRCI G +FD+AVD+RR+S T+G W + +SA N Q +IP GFAHGF+ L
Sbjct: 69 FPQDKLVRCINGEVFDVAVDLRRDSKTFGKWFGVVLSAENKKQFFIPKGFAHGFLVLSDY 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E YK +DFY + G+ W D I + WPL D + S+KD
Sbjct: 129 AEFAYKCSDFYHPNDEGGLIWNDPDIGVEWPLQDGVELIFSDKD 172
>gi|332995215|gb|AEF05270.1| dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase [Alteromonas sp. SN2]
Length = 181
Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 109/167 (65%), Gaps = 2/167 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V+I++ + F D RG+F +T+ + K+ FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPKVFGDERGFFLETFRTDWFKKECADVEFVQDNHSKS-SQGILRGLHYQLE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR ++G ++D+AVD+R++SPTYG WV + +SA N Q+++P GFAHGF
Sbjct: 66 Q-TQGKLVRVVSGEVYDVAVDMRKDSPTYGKWVGVLLSAENKRQLWVPAGFAHGFYVTSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+ E +YK TD+Y E + V + D +++I WPL++ PS+S KD+N
Sbjct: 125 SAEFVYKCTDYYHPESEVSVKFNDPTLNIDWPLVNGEKPSLSGKDEN 171
>gi|88808162|ref|ZP_01123673.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. WH 7805]
gi|88788201|gb|EAR19357.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. WH 7805]
Length = 195
Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
++ R F D RGWF ++++ + E G VF QDNHS S G +RGLH+Q P Q
Sbjct: 19 LISPRAFGDERGWFFESWNQRKFDEAAGETVVFSQDNHSRSVQ-GVLRGLHYQLAPEPQG 77
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR G IFD+AVDIR+ S T+G WV +SA N Q+++P GFAHGF+TL EV
Sbjct: 78 KLVRASIGEIFDVAVDIRQGSATFGQWVGAHLSAENKQQLWVPEGFAHGFLTLSPVAEVQ 137
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQIDS 177
YK F++ E + + W D SI+I WPL L S+S KD + L+Q +
Sbjct: 138 YKARGFWNKECERAIVWNDASINIQWPLDQLGGAEVSLSGKDADAASLDQAKA 190
>gi|229587853|ref|YP_002869972.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas fluorescens
SBW25]
gi|229359719|emb|CAY46567.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas fluorescens
SBW25]
Length = 181
Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 109/172 (63%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I++ + F D RG+F ++Y+++ + Q V FVQDNHS S G +RGLH+Q +A
Sbjct: 11 VLIIEPKVFGDERGFFYESYNARNFAQATGQHVDFVQDNHSRS-QKGVLRGLHYQ-IEHA 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR AG + D+AVDIRR+SP +G W S+ +SA N Q++IP GFAHGF+ L + E
Sbjct: 69 QGKLVRVTAGEVLDVAVDIRRSSPHFGKWASVRLSAENSRQLWIPPGFAHGFVVLSDSAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD+Y+ + + W D +DI W T P++S KDQN L + D
Sbjct: 129 FLYKTTDYYTPSAERCIRWDDADLDIDWQFAGT--PTLSGKDQNGKSLKEAD 178
>gi|49081796|gb|AAT50298.1| PA5164 [synthetic construct]
Length = 182
Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 105/169 (62%), Gaps = 5/169 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + R F D RG+F ++Y+ + +E V FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSAR-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
AQ KLVR G +FD+AVD+RR SPT+G WV +SA N Q++IP GFAHGF+ L
Sbjct: 65 -IRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK TDF++ EH+ + W D + I WPL D P +SEKD+
Sbjct: 124 SEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWPLQDA--PLLSEKDRQ 170
>gi|297569786|ref|YP_003691130.1| glucose-1-phosphate thymidylyltransferase [Desulfurivibrio
alkaliphilus AHT2]
gi|296925701|gb|ADH86511.1| glucose-1-phosphate thymidylyltransferase [Desulfurivibrio
alkaliphilus AHT2]
Length = 401
Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/141 (52%), Positives = 93/141 (65%), Gaps = 4/141 (2%)
Query: 34 GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCW 93
GL+ FVQDNHS S G +RGLH+Q PP AQ KLVR + G +FD+AVDIR NSPT+G W
Sbjct: 260 GLRPNFVQDNHSKS-QKGVLRGLHYQLPPKAQGKLVRVVQGEVFDVAVDIRHNSPTFGRW 318
Query: 94 VSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP 153
V +SA+N Q++IP GFAHG +TL E +YK TDFY+ EH+ +AW D I I W
Sbjct: 319 VGQRLSADNKRQLWIPEGFAHGVLTLTPTAEFLYKTTDFYAPEHERCIAWNDPDIGIDWG 378
Query: 154 LLDTILPSVSEKDQN-LPFLN 173
D P +S KD+ +P N
Sbjct: 379 YEDP--PLLSTKDRECVPLCN 397
>gi|325970221|ref|YP_004246412.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Spirochaeta sp. Buddy]
gi|324025459|gb|ADY12218.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Spirochaeta sp. Buddy]
Length = 180
Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 105/168 (62%), Gaps = 3/168 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V +++ R F D RG+F +TY+ + G+ + FVQDN S S G +RGLHFQ+
Sbjct: 10 DIEGVFVIEPRVFGDERGYFMETYNKADFHKAGINNEFVQDNQSKS-RKGVLRGLHFQKQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y QAKLVR G ++D+AVD+R++SPTYG +V + +SA Q +IP GFAHGF+ L
Sbjct: 69 -YPQAKLVRVTKGEVYDVAVDLRKDSPTYGKYVGVHLSAEKKNQFFIPRGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
E YK +FY E + + W D I I WP + IL S+SEKD+ L
Sbjct: 128 EAEFTYKCDEFYHPEDEGSIRWDDPIIGIQWPEI-GILFSLSEKDKAL 174
>gi|298481186|ref|ZP_06999380.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D22]
gi|298272760|gb|EFI14327.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D22]
Length = 189
Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 114/181 (62%), Gaps = 4/181 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F+D RG+F +++S + E + FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IESVVIIEPRLFKDDRGYFFESFSQREFTEKVRKVDFVQDNESKS-SYGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLVR I G + D+AVDIR+ SPT+G VS+E++ N Q +IP GFAHGF+ L
Sbjct: 67 YAQSKLVRVIKGSVLDVAVDIRKGSPTFGEHVSVELTERNHCQFFIPRGFAHGFVVLTEE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +FY+ + + +AW D ++ I W + D I+ +SEKD++ L + F+Y
Sbjct: 127 VIFQYKCDNFYAPQCEGALAWDDPALKIDWKVPADKII--LSEKDKHHERLEEASWLFDY 184
Query: 182 D 182
+
Sbjct: 185 N 185
>gi|193213370|ref|YP_001999323.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobaculum parvum NCIB
8327]
gi|193086847|gb|ACF12123.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobaculum parvum NCIB
8327]
Length = 185
Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 107/175 (61%), Gaps = 3/175 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V + + + F D RGWF +++ + ++ FVQDN SFS G +RGLH+Q+PPY Q
Sbjct: 11 VLVFEPQVFGDDRGWFFESFRQDMFEQHAGSHRFVQDNESFS-RHGVVRGLHYQKPPYTQ 69
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR G + D+AVDIR+ SPT+G + +S NN +++P GFAHGF L +
Sbjct: 70 GKLVRASRGEVLDVAVDIRKGSPTFGQHTAQLLSENNRRMMWLPPGFAHGFAVLSDSAVF 129
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
YK T +Y+ HD+G+ W D +I I W L + + S+S+KD P L++I+ P E
Sbjct: 130 SYKCTGYYAPTHDAGIRWNDPAIGIDWRLSEQEI-SLSDKDLRQPLLHEIE-PLE 182
>gi|297171712|gb|ADI22705.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[uncultured Rhodospirillales bacterium HF0500_23A22]
Length = 204
Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 111/183 (60%), Gaps = 4/183 (2%)
Query: 4 NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPP 62
PV + R D RG F++T+ + ++ + DV VQ+N S S T+RGLH+Q P
Sbjct: 12 GPVLFVPNRH-RDPRGIFAETFRADEFRD-AIGDVDLVQENQSISHPINTVRGLHYQAEP 69
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KL+R + G + D+AVDIR +SPT+G + +E+SA N Q++IP GFAHGF TL +
Sbjct: 70 HAQGKLMRVVQGAVLDVAVDIRPHSPTFGRHIKIELSAENWYQLWIPPGFAHGFKTLRPD 129
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
T VIYKV+D+YS HD G+AW D + I W L +S+KD+ P ++ F
Sbjct: 130 THVIYKVSDYYSPSHDHGMAWNDPDLGIDWELYGQQA-VLSDKDRQQPRFCEVTPLFAGG 188
Query: 183 GLP 185
+P
Sbjct: 189 AIP 191
>gi|269102102|ref|ZP_06154799.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268162000|gb|EEZ40496.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 181
Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 109/176 (61%), Gaps = 6/176 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPTVFGDERGFFMETWNQKKFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR+NSPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 TE-NTQGKLVRVVSGEVFDVAVDIRKNSPTFGKWVGVYLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TDFY+ + + + W D I I WPL + P +S+KD L +I
Sbjct: 125 SDEAEFVYKCTDFYNPKAEHSILWNDLDIGIEWPLDNA--PVLSDKDSKGTLLTKI 178
>gi|331086187|ref|ZP_08335269.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330406346|gb|EGG85860.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 183
Score = 147 bits (372), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 105/173 (60%), Gaps = 2/173 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ ++++ F D RG+F +TY+ KE G+ FVQDN S S G +RGLHFQ
Sbjct: 11 IDGLKVITPTVFGDERGYFMETYNYNDYKEAGIDMEFVQDNQSCS-KKGVLRGLHFQ-IN 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q KLVR ++G ++D+AVD+R S TYG W + +SA N Q +IP FAHGF+ L +
Sbjct: 69 YPQDKLVRVVSGEVYDVAVDLREGSETYGKWYGVLLSAENKKQFFIPKNFAHGFLVLSES 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YK TDFY + G+AW D I + WP+ + + ++SEKDQ + ++
Sbjct: 129 AEFAYKCTDFYHPNDEGGLAWNDPDIGVEWPIPEGMELTISEKDQKWTGIKEL 181
>gi|209883772|ref|YP_002287629.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oligotropha carboxidovorans
OM5]
gi|209871968|gb|ACI91764.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oligotropha carboxidovorans
OM5]
Length = 188
Score = 147 bits (372), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 112/175 (64%), Gaps = 6/175 (3%)
Query: 2 NINPVR---ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHF 58
N +P+R ++ K D RG+F++ + + + GL+ FVQ N+S + GT+RGLH+
Sbjct: 4 NPSPLRGACTIELEKRGDDRGFFARMFCEREFADAGLETRFVQVNNSLTAKRGTLRGLHY 63
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
Q PP A+ K+VRC+ G ++D+ VD+R +SPT+ W E++A+N +Y+P GFAH F+T
Sbjct: 64 QLPPAAEVKVVRCVRGALYDVIVDLRPDSPTFRKWFGAELTADNRTMMYVPRGFAHAFLT 123
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L + E +Y V+ FYS E++ GV + D + I WP +D + VS+KD+N P N
Sbjct: 124 LTDDAEAMYLVSAFYSPENERGVRYNDPAFSIAWP-VDPL--EVSDKDRNWPDFN 175
>gi|148976929|ref|ZP_01813584.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrionales bacterium SWAT-3]
gi|145963803|gb|EDK29063.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrionales bacterium SWAT-3]
Length = 187
Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 109/176 (61%), Gaps = 6/176 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ F D RG+F +T+S K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVKIIEPTVFGDERGFFMETWSQKQFEELVTGKPTPFVQDNHSKS-KKGILRGLHYQT 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR ++G +FD+AVDIR+ SPT+G WV +SA N Q+++P GFAHGF
Sbjct: 67 E-NTQGKLVRVVSGEVFDVAVDIRKGSPTFGQWVGEYLSAENKRQLWVPEGFAHGFYVTS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ + + W D++IDI WP +P +S KD+ +N+I+
Sbjct: 126 EEAEFVYKCTDYYNPAAEETLMWDDETIDIKWPFQG--VPLLSGKDRKGTLINKIN 179
>gi|255036724|ref|YP_003087345.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dyadobacter fermentans DSM
18053]
gi|254949480|gb|ACT94180.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dyadobacter fermentans DSM
18053]
Length = 181
Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 78/159 (49%), Positives = 99/159 (62%), Gaps = 5/159 (3%)
Query: 12 RKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
R F D RG F ++++ + +LGL FVQDN SFS G +RGLHFQ P+AQ KLVR
Sbjct: 17 RVFGDDRGMFFESFNEEAFTKLGLPVNFVQDNQSFS-KKGVVRGLHFQNAPFAQGKLVRV 75
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
I GR+ D+AVDIR SPT+G E+S YIP GFAHGF+ LE +T YK T+
Sbjct: 76 ITGRVLDVAVDIRPGSPTFGKHEVFELSGEQNNIAYIPEGFAHGFVALE-DTIFSYKCTN 134
Query: 132 FYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
Y+ E +SG+ W D ++I W + D P VSEKD LP
Sbjct: 135 LYNKESESGILWNDPDLNIDWGIAD---PIVSEKDLVLP 170
>gi|256820076|ref|YP_003141355.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga ochracea DSM
7271]
gi|256581659|gb|ACU92794.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga ochracea DSM
7271]
Length = 182
Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 106/171 (61%), Gaps = 2/171 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ + F D RG+F +++S + EL VFVQDN S S G +RGLHFQ+P
Sbjct: 7 KIEGVVIIEPQVFFDGRGYFFESFSQQRFNELVSPTVFVQDNESQS-TYGVLRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQAKLVR + G + D+AVD+R++SPT+G + S+ ++ N Q +IP GFAHGF L
Sbjct: 66 PFAQAKLVRVVKGEVLDVAVDLRKDSPTFGQYESVILNEENKRQFFIPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
YK ++Y+ E + V W D +I I W L ++ +SEKD+ P L
Sbjct: 126 EAIFQYKCDNYYAPESEGSVRWDDPTIGIDWRLPAEVI-QLSEKDKKAPLL 175
>gi|255530275|ref|YP_003090647.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pedobacter heparinus DSM
2366]
gi|255343259|gb|ACU02585.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pedobacter heparinus DSM
2366]
Length = 184
Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 99/145 (68%), Gaps = 1/145 (0%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ + ++D+RG+F ++Y++KL E G+ FVQDN SFS G +RG+H Q PP+ Q K
Sbjct: 13 VIEPKVWKDNRGYFYESYNAKLFAEAGISANFVQDNQSFS-QKGALRGMHAQSPPFEQGK 71
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR + G ++DIAVDIR+ SPTYG +E+S+ N Q+++P GF HGF+TLE T Y
Sbjct: 72 LVRVLQGAVWDIAVDIRKASPTYGQHFGVELSSENHKQLWVPPGFLHGFLTLEDQTIFTY 131
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITW 152
KV+++Y + GV W D ++I W
Sbjct: 132 KVSNYYDKASEIGVMWNDPDLNINW 156
>gi|163757897|ref|ZP_02164986.1| strX protein [Hoeflea phototrophica DFL-43]
gi|162285399|gb|EDQ35681.1| strX protein [Hoeflea phototrophica DFL-43]
Length = 182
Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 106/175 (60%), Gaps = 9/175 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+P RI D RG F++ + + GL + Q N S S GT+RGLHFQRP
Sbjct: 13 RIDPERI------GDERGSFARMFCTSEFSAHGLATSWAQMNVSHSARVGTLRGLHFQRP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P A+AKLVRC+ G +FD+ VD+R SP +G W S+E++ +G +Y+P G AHGF TL
Sbjct: 67 PAAEAKLVRCLKGAMFDVLVDLRSGSPGFGQWTSVELTPESGAMVYVPEGVAHGFQTLLP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+TEV+Y + Y EH+ G+ + D+S+ + WPL + L SE+D+ P L +D
Sbjct: 127 DTEVLYCHSVPYQREHEGGLRFDDESVGVAWPLPVSTL---SERDKAHPGLLALD 178
>gi|323152428|gb|EFZ38716.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli EPECa14]
Length = 152
Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 98/144 (68%), Gaps = 2/144 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKS-SKGVLRGLHYQLE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 67 PYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQD 145
E +YK T++Y E + + W D
Sbjct: 127 IAEFVYKTTNYYHPESEGCIKWDD 150
>gi|313673123|ref|YP_004051234.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Calditerrivibrio
nitroreducens DSM 19672]
gi|312939879|gb|ADR19071.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Calditerrivibrio
nitroreducens DSM 19672]
Length = 187
Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 106/171 (61%), Gaps = 3/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I ++I++T + D+RG F++ Y L E+ VQ NHS + GT+RGLHFQ PP
Sbjct: 12 IEGLKIVETASYIDTRGAFTRLYCECELAEIIGSRRIVQINHSCTQQVGTVRGLHFQYPP 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+A+ KLVRC+ GR++D+AVD+R NSPT+ W + E++ NG I IP GFAHGF LE
Sbjct: 72 HAEMKLVRCLRGRVWDVAVDLRANSPTFLHWHAEELTPENGRMIIIPEGFAHGFQVLEAA 131
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+E++Y T +Y+ ++G + D + I WPL + +S +D N P L
Sbjct: 132 SELLYLHTAYYAPSAEAGFRYDDPCLGIKWPL---PVSELSPRDANHPLLK 179
>gi|53712099|ref|YP_098091.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides fragilis YCH46]
gi|52214964|dbj|BAD47557.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides fragilis YCH46]
Length = 189
Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 110/182 (60%), Gaps = 6/182 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V I++ R F D RG F ++++ + E + +FVQDN S S G IRGLHFQ+P
Sbjct: 7 DIKGVMIIEPRLFSDERGHFFESFNQNIFVEEVCKTMFVQDNESKS-SYGVIRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR + G + D+AVDIRRNSP +G +VS+E++ +N Q++IP GFAHGF L
Sbjct: 66 PFAQSKLVRVVKGAVLDVAVDIRRNSPFFGKYVSVELTEDNHRQLFIPRGFAHGFSVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPF 179
YK + Y+ + + +AW D + I W P+ +L SEKD L D F
Sbjct: 126 EVVFQYKCDNLYAPQCEGAIAWNDPDLGIDWKIPMEKVVL---SEKDSCHSVLKDTDWLF 182
Query: 180 EY 181
+Y
Sbjct: 183 DY 184
>gi|72383078|ref|YP_292433.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prochlorococcus marinus str.
NATL2A]
gi|72002928|gb|AAZ58730.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prochlorococcus marinus str.
NATL2A]
Length = 196
Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 111/169 (65%), Gaps = 7/169 (4%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQ-----DVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKL 68
F D RG F ++++S++ +L L +F+QDN SFS G +RGLH+Q P+ Q KL
Sbjct: 25 FNDERGNFFESWNSQIFDDLLLNHDQGPQIFLQDNQSFSRK-GVLRGLHYQITPHVQGKL 83
Query: 69 VRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128
VRCIAG I+D+ VD+R +S T+ W S+ +SA N Q+++P GFAHGF++L TEV+YK
Sbjct: 84 VRCIAGEIYDVIVDLRMSSKTFKSWGSINLSAQNKKQLWVPVGFAHGFLSLTDCTEVLYK 143
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
TD++ + + G++W D I I WP + + P +S+KD LP +++ S
Sbjct: 144 TTDYWDPKCERGISWDDPDIKIIWP-ENFLHPELSKKDLMLPSFSELKS 191
>gi|224538134|ref|ZP_03678673.1| hypothetical protein BACCELL_03025 [Bacteroides cellulosilyticus
DSM 14838]
gi|224520262|gb|EEF89367.1| hypothetical protein BACCELL_03025 [Bacteroides cellulosilyticus
DSM 14838]
Length = 193
Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 115/184 (62%), Gaps = 4/184 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI+ + I++ + DSRG+F ++++ K +E + FVQDN S S G +RGLHFQ+P
Sbjct: 7 NIDQIAIIEPQIHSDSRGYFFESFNQKEFEEKVCKTTFVQDNESKS-SYGVLRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR + G + D+AVDIR SPT+G VS+E++ +N Q +IP GFAHGF L
Sbjct: 66 PFAQSKLVRVVKGAVLDVAVDIRIGSPTFGQHVSIELTEDNHRQFFIPRGFAHGFSVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFE 180
YK + Y+ +++ +AW D + I W + D +L +SEKD+ P L + + F+
Sbjct: 126 EVIFQYKCDNLYAPQYEGAIAWDDPDLGIDWHIPKDKML--LSEKDKTHPRLKEAEWLFD 183
Query: 181 YDGL 184
Y +
Sbjct: 184 YSDM 187
>gi|149175092|ref|ZP_01853715.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Planctomyces maris DSM
8797]
gi|148846070|gb|EDL60410.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Planctomyces maris DSM
8797]
Length = 182
Score = 147 bits (371), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 104/163 (63%), Gaps = 8/163 (4%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ--RPPYAQ 65
I+ R F D RG+F +T+ + ++ G+ FVQDNHS S G +RGLHFQ RP Q
Sbjct: 13 IITPRVFSDDRGFFKETFQQERYEQAGIPGPFVQDNHSRS-SAGILRGLHFQIHRP---Q 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKLV + G I D+ VD+R+NSPT+G +S+ +SA N Q+++P GFAHGF L +
Sbjct: 69 AKLVFAVEGEILDVCVDLRKNSPTFGKSISVLLSAENHKQLFVPAGFAHGFYVLSPRADF 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+YK TD+Y EH+ + W D +++I WPL D P +SEKD+
Sbjct: 129 MYKCTDYYFPEHERTLLWNDPALEIEWPLSDE--PILSEKDRK 169
>gi|330970569|gb|EGH70635.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 181
Score = 147 bits (371), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 107/172 (62%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ + F D RG+F +++++K + GL FVQDNHS S G +RGLH+Q A
Sbjct: 11 VLILEPKVFGDERGFFYESFNAKAFQAATGLTREFVQDNHSRS-QRGVLRGLHYQ-IENA 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR G++ D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L N E
Sbjct: 69 QGKLVRVTVGKVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLSENAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD+Y+ + +AW D + I W P++S KDQ L + D
Sbjct: 129 FLYKTTDYYTPSAERCIAWDDAELAIDWQFDGQ--PNLSAKDQQGKRLKEAD 178
>gi|239813764|ref|YP_002942674.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Variovorax paradoxus S110]
gi|239800341|gb|ACS17408.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Variovorax paradoxus S110]
Length = 182
Score = 147 bits (371), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 111/176 (63%), Gaps = 6/176 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ-R 60
I V +++ + F D+RG+F ++++ K E +G FVQDNHS S G +RGLH+Q +
Sbjct: 8 IPEVLVIEPKVFGDARGFFYESFNGKAFDEAVGRHVEFVQDNHSRSAK-GVLRGLHYQIQ 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLVR + G +FD+AVDIR++SPT+G WV +E+S +N Q+++P GFAHGF+ L
Sbjct: 67 QP--QGKLVRVVRGAVFDVAVDIRKSSPTFGKWVGVELSEDNHRQLWVPEGFAHGFLVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ H+ + W D + I WP + P +S KDQ L Q +
Sbjct: 125 ETAEFLYKTTDYYAPAHERCIKWDDAKLGIAWPSVGA-HPQLSAKDQAGAALIQAE 179
>gi|261210463|ref|ZP_05924757.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio sp. RC341]
gi|260840521|gb|EEX67087.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio sp. RC341]
Length = 181
Score = 147 bits (371), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 108/169 (63%), Gaps = 6/169 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T+S K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPTVFGDERGFFMETWSQKRFEELVTGKPTTFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G ++D+AVD+R SPT+G W+ + +S+ N Q+++P GFAHGF L
Sbjct: 66 TEN-TQGKLVRVVSGEVYDVAVDVRAESPTFGQWIGVHLSSENKRQLWVPEGFAHGFYVL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK TD+Y+ + + W DK + I WP +DT P +S+KDQN
Sbjct: 125 SEEAEFVYKCTDYYNPSAEVSIRWDDKELSIEWP-IDT-GPYLSDKDQN 171
>gi|21227268|ref|NP_633190.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanosarcina mazei Go1]
gi|20905616|gb|AAM30862.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanosarcina mazei Go1]
Length = 183
Score = 147 bits (370), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 109/174 (62%), Gaps = 7/174 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + IL+ + + D RG+F ++Y+ K L+ L G + F+QDN S S G IRGLH+Q
Sbjct: 8 IKDLLILEAKVYADGRGYFFESYNKKTLESLTGKEYNFIQDNESRS-SYGVIRGLHYQLA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY+QAKLVR + GR++D+AVD+R++SPT+G W +E+S N Q IP GFAHGF L
Sbjct: 67 PYSQAKLVRVLEGRVYDVAVDLRKDSPTFGKWEGVELSGENKKQFLIPKGFAHGFSVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLN 173
YK ++Y E ++G+ + D +++I W P D L SEKD+ LP L
Sbjct: 127 TAVFAYKCDEYYHPEAEAGIIYNDPALNIDWKIPERDAKL---SEKDKLLPELK 177
>gi|306840751|ref|ZP_07473499.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella sp. BO2]
gi|306289257|gb|EFM60504.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella sp. BO2]
Length = 174
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 107/172 (62%), Gaps = 3/172 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NI+ ++ + +D RGWF++ Y E L+ F Q + SFS + GT+RGLH+Q
Sbjct: 6 LNIDGAWSIEPERLKDERGWFARVYCEAAFAERKLETHFPQHSLSFSREKGTLRGLHYQS 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ + KLV C+ G ++D+ VD+R +SPTY W +E+SA NG Q+YIP G AHGF TL
Sbjct: 66 EPHCETKLVTCLQGIVWDVLVDLRPHSPTYRRWAGVELSAENGAQLYIPEGCAHGFQTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ + Y ++ Y+ +H +G+ + D ++DI WP ++ +S+KD PFL
Sbjct: 126 DDVLIRYMISKPYAPDHAAGIRYDDPALDIPWPDKPSV---ISQKDLGWPFL 174
>gi|94311664|ref|YP_584874.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cupriavidus metallidurans
CH34]
gi|93355516|gb|ABF09605.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Cupriavidus metallidurans CH34]
Length = 184
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 111/167 (66%), Gaps = 6/167 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ-R 60
I V I++ + F D+RG+F ++++ K E GL FVQDNHS S G +RGLH+Q +
Sbjct: 10 IPDVMIIEPKVFGDARGFFFESFNQKAFGEATGLDLEFVQDNHSRS-AKGVLRGLHYQIQ 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLVR + GR+FD+AVDIR+ S T+G WV +E+S +N Q ++P GFAHGF+ L
Sbjct: 69 QP--QGKLVRVVRGRVFDVAVDIRKQSATFGKWVGVELSEDNHRQFWVPPGFAHGFVVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+ + +YK TD+Y+ + + +AW D I I WP ++ ++P +S KDQ
Sbjct: 127 ESADFLYKTTDYYAPQFERTIAWNDPEIGIEWPQMN-VVPLLSAKDQ 172
>gi|325958659|ref|YP_004290125.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanobacterium sp. AL-21]
gi|325330091|gb|ADZ09153.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanobacterium sp. AL-21]
Length = 185
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 100/165 (60%), Gaps = 2/165 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I+ V I++ F D RG+F +TY KE GL FVQDN S S G +RGLHFQ
Sbjct: 10 SIDDVYIIEPTVFGDDRGYFMETYHQGEFKEAGLDMEFVQDNQSRSV-RGVLRGLHFQYT 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR I G +FD+AVD+R NSPTYG + S+ +S N Q Y+P GFAHGF+ L
Sbjct: 69 Q-PQGKLVRVIKGTVFDVAVDLRENSPTYGQYESVVLSEENKKQFYVPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E YK T FY+ + + G+ W D I+I WPL + +S+KD
Sbjct: 128 VAEFTYKCTAFYNADDEGGIMWNDPDINIEWPLKEAGNVVLSDKD 172
>gi|299137000|ref|ZP_07030183.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidobacterium sp. MP5ACTX8]
gi|298601515|gb|EFI57670.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidobacterium sp. MP5ACTX8]
Length = 192
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 105/176 (59%), Gaps = 2/176 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V++++ +K D RGWFS+ +++K GL D FVQDN SFS G +RGLH+Q Q
Sbjct: 16 VKLVRPKKHGDERGWFSEVFNAKSFSAAGLPDRFVQDNQSFS-RRGVLRGLHYQLGE-QQ 73
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR ++G I+D+AVD+R NSP +G W ++ ++IP GF HGF+ L V
Sbjct: 74 GKLVRALSGHIWDVAVDLRPNSPDFGKWAGFDLKGEEIEFLWIPEGFGHGFVVLSETANV 133
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+YK T+FY + V W D +++ITWPL +PSVS KD L + + P Y
Sbjct: 134 LYKTTNFYYPAGERCVRWDDPTLNITWPLDGIGVPSVSAKDAIGNLLAEAELPPPY 189
>gi|309274612|gb|ADO64236.1| RmlC [Vibrio vulnificus]
Length = 181
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 107/167 (64%), Gaps = 6/167 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
NI V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 NIPDVKIIEPTVFGDERGFFMETWNQKRFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SPT+G WV +SA N Q++IP GFAHGF
Sbjct: 66 TEN-TQGKLVRVVSGEVFDVAVDIRKDSPTFGQWVGEYLSAENKRQLWIPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y+ + + + W D+++ I WPL + +P +S KD
Sbjct: 125 SNEAEFVYKCTDYYNPDSEVSIKWDDETLKIQWPLAN--MPILSNKD 169
>gi|330998420|ref|ZP_08322244.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paraprevotella xylaniphila
YIT 11841]
gi|329568526|gb|EGG50331.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paraprevotella xylaniphila
YIT 11841]
Length = 190
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 110/180 (61%), Gaps = 4/180 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F D+RG+F +++S + L FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IEGVVIIEPRLFNDARGYFFESFSQRDFDRLVRTVHFVQDNESKS-SYGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLVR I G + D+AVDIR+ SPT+G V++E++ N Q +IP GFAHGF L
Sbjct: 67 YAQSKLVRVIKGAVLDVAVDIRKGSPTFGQHVAVELTEENHRQFFIPRGFAHGFSVLTPE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +FY+ + + +AW D + I W + D IL +SEKD+ P L + F+Y
Sbjct: 127 VIFQYKCDNFYAPQSEGALAWDDPDLGINWHIPSDKIL--LSEKDKRHPRLKDAEWLFDY 184
>gi|21673145|ref|NP_661210.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium tepidum TLS]
gi|21646222|gb|AAM71552.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium tepidum TLS]
Length = 185
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 2/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V + + F D RGWF +++ + ++ FVQDN SFS G +RGLH+Q+P
Sbjct: 7 SIPDVLLFEPEVFGDERGWFCESFRQDIFEQHAGCHRFVQDNESFS-RYGVVRGLHYQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ Q KLVR I G + D+AVDIR+ SPT+G + ++ +N ++IP GFAHGF L
Sbjct: 66 PHVQGKLVRVIRGEVLDVAVDIRKGSPTFGHHTAQLLNESNRRMMWIPPGFAHGFAVLSQ 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
YK TD+Y+ HD+G+ W D +I I W + ++ + +S+KD + P L++I+
Sbjct: 126 TAVFSYKCTDYYAPSHDAGIRWNDPAIGIEWSVPESEI-RLSDKDLHHPMLHEIEG 180
>gi|288559367|ref|YP_003422853.1| dTDP-4-dehydrorhamnose 3,5- epimerase RfbC1 [Methanobrevibacter
ruminantium M1]
gi|288542077|gb|ADC45961.1| dTDP-4-dehydrorhamnose 3,5- epimerase RfbC1 [Methanobrevibacter
ruminantium M1]
Length = 192
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 100/170 (58%), Gaps = 4/170 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V ++ FED RG+F +TY+ K G+ FVQDN S S G +RGLHFQ
Sbjct: 10 EIEGVFTVEPTVFEDERGYFMETYNENDFKAEGIDLTFVQDNQSKS-SKGVLRGLHFQYT 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR I G +FD+ VD+R++SPTYG W+ +S N Q++IP GFAHGF+ L
Sbjct: 69 Q-PQGKLVRVIKGEVFDVGVDLRKDSPTYGKWMGEILSEENKKQLFIPKGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS--VSEKDQNL 169
E +YK TDFY + + G+ W D I I WPL D +SEKD+ L
Sbjct: 128 EAEFVYKCTDFYKGDDEGGIQWNDPDIGIEWPLGDLKEEDLILSEKDKLL 177
>gi|227819574|ref|YP_002823545.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium fredii NGR234]
gi|227338573|gb|ACP22792.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium fredii NGR234]
Length = 179
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 99/162 (61%), Gaps = 3/162 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++ + K + + GL FVQ + S S GT+RGLHFQ P+ + KLV C G
Sbjct: 21 DDRGSFTRVFCEKEMADFGLATRFVQHSRSHSVRKGTLRGLHFQEEPHTEVKLVSCACGA 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
IFD+ VD+R NSPT W+ E++ N Q+YIP GFAHGF TL + EV Y ++ FY+
Sbjct: 81 IFDVVVDLRPNSPTRNRWLGFELTPENMKQVYIPAGFAHGFQTLTEDAEVSYLISQFYTP 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+GV + D + I WPL+ T ++SE+D+ P + ++ S
Sbjct: 141 HAATGVRFNDPAFSINWPLMPT---AMSERDRTWPLVRKLVS 179
>gi|118595004|ref|ZP_01552351.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylophilales bacterium
HTCC2181]
gi|118440782|gb|EAV47409.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylophilales bacterium
HTCC2181]
Length = 182
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 105/165 (63%), Gaps = 2/165 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQ 59
++I V+IL + F+D RG F +T++ K E +D +FVQDN S S G +RGLH+Q
Sbjct: 6 LSIPEVKILDPKIFKDERGLFYETFNQKNFNEFVDEDAIFVQDNISQSI-SGVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P+ Q KLV + G +FD+AVDIRR+S T+G +VS +SA N QI+IP GFAHGF+TL
Sbjct: 65 KSPFPQGKLVSVLQGEVFDVAVDIRRSSSTFGRYVSATLSAENKKQIWIPEGFAHGFLTL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSE 164
V YK T+FYS + +AW D ++I WP D + S +
Sbjct: 125 SDTALVYYKATNFYSPIDERCIAWNDSVLNINWPNKDRLFFSAKD 169
>gi|152987706|ref|YP_001351220.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa PA7]
gi|150962864|gb|ABR84889.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa PA7]
Length = 181
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 107/177 (60%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + R F D RG+F ++Y+ + +E G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRS-ARGVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
AQ KLVR G +FD+AVD+RR SPT+G WV +SA N Q++IP GFAHGF+ L
Sbjct: 65 -IQQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TDF++ E++ + W D + I WPL + P +SEKD+ + D
Sbjct: 124 SEYAEFLYKTTDFWAPEYERSIVWNDPDLKIDWPLREA--PLLSEKDRQAKAFAEAD 178
>gi|262192433|ref|ZP_06050585.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae CT 5369-93]
gi|262031697|gb|EEY50283.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae CT 5369-93]
Length = 178
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 111/176 (63%), Gaps = 6/176 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T++ K +EL G +FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPTVFGDERGFFMETWNQKRFEELVTGKPTLFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 -TENTQGKLVRVVSGEVFDVAVDIRKDSPTFGKWVGVYLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ + + + W D+ + I WP+ + P +SEKD L +I
Sbjct: 125 SEEAEFVYKCTDYYNPKAEVSIRWNDEKLAIEWPI--STKPQLSEKDTQALQLAKI 178
>gi|218438466|ref|YP_002376795.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 7424]
gi|218171194|gb|ACK69927.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 7424]
Length = 180
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 108/177 (61%), Gaps = 7/177 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQ- 59
I V I++ + F D RG+F ++++ K+ K+ D FVQDNHS S +RGLH+Q
Sbjct: 7 EIPDVLIIEPKVFGDDRGFFYESFTEKVFKDKTEVDTHFVQDNHSRSLK-NVLRGLHYQI 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P Q KLVR + G +FD+AVDIR NSPT+G WV +SA N Q+++P GFAHGF+ L
Sbjct: 66 KQP--QGKLVRVVLGEVFDVAVDIRSNSPTFGQWVGCRLSAENKRQLWVPEGFAHGFLVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ E++ + W D I I WP+ D P +S KDQ + D
Sbjct: 124 SEAAEFLYKTTDYYAPEYERTIIWNDPDIGIDWPIEDE--PILSNKDQAGKLFKEAD 178
>gi|50982342|gb|AAT91795.1| putative dTDP-L-rhamnose processing protein [Yersinia
enterocolitica]
Length = 182
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 108/169 (63%), Gaps = 6/169 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
NI V+I++ F D RG+F + + + +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 NIPDVKIIEPTVFGDDRGFFMEIWQKQKFEELVTGYPCDFVQDNHSKS-SKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR I+G ++D+AVDIRR+S T+G WV + +SA N Q++IP GFAHGF
Sbjct: 66 SVN-TQGKLVRVISGEVYDVAVDIRRDSETFGQWVGIYLSAENRRQLWIPKGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK TD+Y+ + ++W D S+DI WPL+D P +S+KDQN
Sbjct: 125 SPVAEFVYKCTDYYNPAFEYSISWNDPSLDINWPLIDP--PILSDKDQN 171
>gi|170755117|ref|YP_001782316.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum B1 str.
Okra]
gi|169120329|gb|ACA44165.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum B1 str.
Okra]
Length = 189
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 102/174 (58%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + +++ + F D RG+F +T++ + K GL VFVQDN S S G +RGLHFQ+
Sbjct: 11 IEDLYVIEPKVFSDPRGYFMETHNYEDFKTAGLDMVFVQDNQSKS-KKGVLRGLHFQKK- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR I G +FD+AVDIR NS T+G W + +S N Q YIP GFAHGF+ L
Sbjct: 69 HPQGKLVRVIKGEVFDVAVDIRENSSTFGKWYGVILSEENKKQFYIPGGFAHGFLVLSDE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSV--SEKDQNLPFLNQ 174
E YK TDFY E + G+ W D +I I WP ++ SEKD+ L
Sbjct: 129 AEFYYKCTDFYHPEDEGGIIWNDPTISIVWPFEKIKDANILLSEKDRKWTILEH 182
>gi|300728483|ref|ZP_07061842.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella bryantii B14]
gi|299774201|gb|EFI70834.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella bryantii B14]
Length = 190
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 113/182 (62%), Gaps = 6/182 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI+ V I++ R F D RG+F ++++ K E FVQDN S S G +RGLHFQ+
Sbjct: 7 NIDGVVIIEPRIFADERGYFYESWNEKEFNEKVRPIRFVQDNQSKS-SYGVLRGLHFQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
++Q+KLVR + GR+ D+AVDIR+ SPT+G V++E++ +N Q +IP GFAHGF L
Sbjct: 66 EHSQSKLVRVVKGRVLDVAVDIRKGSPTFGQHVAVELTEDNQRQFFIPRGFAHGFSVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFE 180
YK + Y E + +AW D+++ I W + D ++ +SEKD N P L DSP+
Sbjct: 126 TAIFQYKCDNLYCKESEGAIAWDDEALGIDWKIPADQVI--LSEKDANHPLLK--DSPYL 181
Query: 181 YD 182
+D
Sbjct: 182 FD 183
>gi|256375866|ref|YP_003099526.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinosynnema mirum DSM
43827]
gi|255920169|gb|ACU35680.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinosynnema mirum DSM
43827]
Length = 200
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ VR+++ FED RG+F ++YS + ++ GL FVQDNHS S G +RGLHFQ
Sbjct: 19 EIDGVRVVQPEWFEDERGFFFESYSKRRWEQHGLHLDFVQDNHSRS-SRGVLRGLHFQTG 77
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q +LVRC G I+D+ VDIR SPT+G W +E+SA N Q+ + GFAHGF L
Sbjct: 78 LAPQHRLVRCTVGAIWDVVVDIRVGSPTFGKWFGIELSATNRTQLLMGPGFAHGFAVLSD 137
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
EV YK T F++ E + +AW D + I WP+ D P++S KD P L
Sbjct: 138 VAEVQYKTTGFHTPEAEGLLAWDDPDVGIPWPIED---PTLSAKDSANPSL 185
>gi|319789558|ref|YP_004151191.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermovibrio ammonificans
HB-1]
gi|317114060|gb|ADU96550.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermovibrio ammonificans
HB-1]
Length = 187
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 107/175 (61%), Gaps = 6/175 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
++++R F+D RG+F + + + G++ FVQDN S S +RGLH+Q P AQ K
Sbjct: 15 LVESRLFKDGRGFFMELFKLPDFEAAGIKGPFVQDNLSLS-RKNVLRGLHYQVEPAAQGK 73
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV C+ G++FD+AVD+R+ SPT+G W E+ G +YIP GFAHGF+TL V Y
Sbjct: 74 LVTCLRGKVFDVAVDLRKGSPTFGRWFGTELFP--GKMLYIPEGFAHGFLTLSEEALVFY 131
Query: 128 KVTDF-YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
KVT YS EHD + W D I I WPL P +SEKD+N P L++ + F +
Sbjct: 132 KVTGSPYSPEHDRSLKWNDPQIGIEWPLDGE--PILSEKDRNAPSLSEAEINFRW 184
>gi|300865163|ref|ZP_07109987.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oscillatoria sp. PCC 6506]
gi|300336853|emb|CBN55137.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oscillatoria sp. PCC 6506]
Length = 184
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 108/184 (58%), Gaps = 9/184 (4%)
Query: 1 MNINPVRILKTRKF-----EDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M I P+++ T + +D RG+F + Y + ++ GL ++Q+N SFS G IRG
Sbjct: 4 MEIKPLKLQGTYQITLAPRKDDRGYFMRAYDEAIFRDHGLTTAWLQENQSFS-KKGVIRG 62
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LHFQ+PP+A+ KLVR ++G+I D+ VD+R+NS TYG W S+E+S N YIP GFAHG
Sbjct: 63 LHFQKPPHAETKLVRVVSGKILDVFVDLRKNSNTYGQWDSIELSEENHKIAYIPKGFAHG 122
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F +L V+YKV + Y E + + W D+++ I W + P S KD N
Sbjct: 123 FCSLTETALVLYKVDEIYYPESEGNLRWNDETLAIKWTI---DRPLTSSKDAQGESFNDF 179
Query: 176 DSPF 179
SPF
Sbjct: 180 ISPF 183
>gi|330954841|gb|EGH55101.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae Cit 7]
Length = 181
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 107/172 (62%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ + F D RG+F +++++K + GL FVQDNHS S G +RGLH+Q A
Sbjct: 11 VLILEPKVFGDERGFFYESFNAKAFQAATGLTREFVQDNHSRS-QRGVLRGLHYQ-IENA 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR G++ D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L + E
Sbjct: 69 QGKLVRVTVGKVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLSEHAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD+Y+ + +AW D + I W PS+S KDQ L + D
Sbjct: 129 FLYKTTDYYTPSAERCIAWNDADLAIDWQFDGQ--PSLSAKDQQGKRLKEAD 178
>gi|218708291|ref|YP_002415912.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio splendidus LGP32]
gi|218321310|emb|CAV17260.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio splendidus LGP32]
Length = 182
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 110/167 (65%), Gaps = 4/167 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V+I++ F D RG+F +T+ + + +K+ G + FVQDNHS S G +RGLHFQ+
Sbjct: 8 ISDVKIVEVSVFGDERGFFMETFRADEFMKQTGAKP-FVQDNHSKS-TKGILRGLHFQQG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR +G ++D+AVD+R++SPT+G V +E+SA N Q+++P GFAHGF +
Sbjct: 66 Q-TQGKLVRVTSGAVYDVAVDMRQSSPTFGKAVGVELSAENKRQLWVPEGFAHGFYVITD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+ E +YK TD+Y E + V W D + I WPL+D LP +S KD +
Sbjct: 125 SAEFVYKCTDYYHPESEVSVRWDDVELAIEWPLVDGELPQLSAKDAD 171
>gi|303257171|ref|ZP_07343185.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderiales bacterium
1_1_47]
gi|331000814|ref|ZP_08324460.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Parasutterella
excrementihominis YIT 11859]
gi|302860662|gb|EFL83739.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderiales bacterium
1_1_47]
gi|329570342|gb|EGG52075.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Parasutterella
excrementihominis YIT 11859]
Length = 185
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 102/164 (62%), Gaps = 3/164 (1%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKL 68
++ + F D RG+F +T+ K +E G+ FVQDN SFS GT+RGLHFQ+ + Q KL
Sbjct: 14 IQPKVFGDKRGFFLETWQKKRYEEAGIHYQFVQDNRSFS-SRGTLRGLHFQKR-FPQGKL 71
Query: 69 VRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128
V I G +FD+AVD+RR S TYG W L +SA Q++IP GFAHGF L YK
Sbjct: 72 VSVIFGEVFDVAVDLRRGSNTYGNWFGLVLSAEKCNQLWIPPGFAHGFYVLSETAFFEYK 131
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN-LPF 171
TD+Y E ++G+ W DK I + WP+ +SEKD+N LPF
Sbjct: 132 CTDYYHPEDEAGILWNDKDIGVDWPIPPASTVLLSEKDRNGLPF 175
>gi|119947064|ref|YP_944744.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Psychromonas ingrahamii 37]
gi|119865668|gb|ABM05145.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Psychromonas ingrahamii 37]
Length = 185
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 109/176 (61%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE--LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
I V+I++ F D RG+F +T++ KL ++ G +FVQDNHS S G +RGLH+Q
Sbjct: 7 KIPDVKIIEPAVFGDERGFFMETWNQKLFEKEVTGKPTLFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR I+G +FD+AVDIR++S T+G WV + +S N Q+++P GFAHGF+
Sbjct: 66 TE-NTQGKLVRVISGEVFDVAVDIRKSSATFGQWVGVTLSEENKRQLWVPEGFAHGFLVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ + + W D I I WP+ + + P +SEKD+N L I
Sbjct: 125 SDEAEFVYKCTDYYNPTSEVSILWNDPDIGIEWPIKEEV-PLLSEKDKNAKLLKMI 179
>gi|254788158|ref|YP_003075587.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Teredinibacter turnerae
T7901]
gi|237683821|gb|ACR11085.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Teredinibacter turnerae
T7901]
Length = 182
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 107/166 (64%), Gaps = 2/166 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F D RG+F +T+ + E + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVVIIEPRVFGDERGFFMETFRADAFAEHCTERPFVQDNHSASRQ-GILRGLHYQMEQ 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR ++G++FD+AVD+R++S T+G WV +E+SA+N Q+++P GFAHGF +
Sbjct: 67 -TQGKLVRVVSGKVFDVAVDLRQSSATFGQWVGVELSADNKRQLWVPEGFAHGFYVMSEF 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK TD+Y + + + W D ++ + WPL++ P++S KD +
Sbjct: 126 AEFVYKCTDYYHPQSERSLRWDDPTVGVEWPLVNGEAPALSAKDAD 171
>gi|327478701|gb|AEA82011.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas stutzeri DSM
4166]
Length = 181
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 109/168 (64%), Gaps = 7/168 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ- 59
+I V I++ + F D RG+F +++++ + GL+ FVQDNHS S G +RGLH+Q
Sbjct: 7 SIPDVLIIEPKVFGDERGFFYESFNAAAFEAATGLKRQFVQDNHSKS-QRGVLRGLHYQI 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P Q KLVR +AG +FD+AVD+R++SP++G W +SA N Q++IP GFAHGF+ L
Sbjct: 66 QQP--QGKLVRVVAGEVFDVAVDLRKSSPSFGRWFGTHLSAQNQRQLWIPEGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+ E +YK TD+Y+ EH+ + W D + I WP + P +S KDQ
Sbjct: 124 SESAEFLYKTTDYYAPEHERSLLWNDPELGIQWPFDEA--PQLSAKDQ 169
>gi|288560318|ref|YP_003423804.1| dTDP-4-dehydrorhamnose 3,5-epimerase RfbC2 [Methanobrevibacter
ruminantium M1]
gi|288543028|gb|ADC46912.1| dTDP-4-dehydrorhamnose 3,5-epimerase RfbC2 [Methanobrevibacter
ruminantium M1]
Length = 187
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
FED RG+F +TY+ K G+ FVQDN S S G +RGLHFQ Q KLVR I
Sbjct: 22 FEDERGYFMETYNENDFKAEGIDLTFVQDNQSKS-SKGVLRGLHFQYTQ-PQGKLVRVIK 79
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G +FD+ VD+R++SPTYG WV +S N Q++IP GFAHGF+ L E +YK TDFY
Sbjct: 80 GEVFDVGVDLRKDSPTYGKWVGEILSEENKKQLFIPKGFAHGFLVLSDEAEFVYKCTDFY 139
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPSV--SEKDQ 167
+ + G+ W D I I WPL + + SEKD+
Sbjct: 140 KGDDEGGIQWNDPEIGIKWPLGNLKEEDIILSEKDK 175
>gi|229008635|ref|ZP_04166047.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus mycoides Rock1-4]
gi|228752640|gb|EEM02256.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus mycoides Rock1-4]
Length = 155
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 97/153 (63%), Gaps = 3/153 (1%)
Query: 29 LLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSP 88
+L+ LG+ FVQDN S+S + G IRGLHFQ P AQ KLV+ I G IFD+ VD+R+ SP
Sbjct: 1 MLRHLGIHHKFVQDNTSYSKEAGVIRGLHFQLEPRAQTKLVQVIQGAIFDVIVDLRKGSP 60
Query: 89 TYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSI 148
TY W S ++ +N + +P GFAHGF TL +T V YKV +FY DSG+AW D+
Sbjct: 61 TYKKWQSFLLTGDNHRLLLVPKGFAHGFCTLVPHTIVHYKVDEFYDASCDSGIAWDDEEF 120
Query: 149 DITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
I+WP+ + IL SEKD LP + F++
Sbjct: 121 AISWPVSNPIL---SEKDGMLPKFTETTHYFQF 150
>gi|167461276|ref|ZP_02326365.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus larvae subsp.
larvae BRL-230010]
Length = 179
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 104/163 (63%), Gaps = 3/163 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
++ K ED RG+F++T+ + + GL F+Q N S++ GTIRG+H+Q PPY +AK
Sbjct: 13 LIGLEKHEDERGFFTRTFCANEFEARGLMPQFIQCNLSYNRKRGTIRGMHYQHPPYGEAK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV+CI G ++D+ +D+R S TY ++ ++ N+G +YIP GFAHGF TL+ TEV+Y
Sbjct: 73 LVQCIRGELYDVIIDLRPLSKTYRQTFAVHLAGNSGTMLYIPEGFAHGFQTLQDETEVLY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
++ Y E +G+ W D S I WPL I +SE+D++ P
Sbjct: 133 YMSSPYKPEAAAGIRWNDPSFSIVWPLDVKI---ISERDRHYP 172
>gi|262275864|ref|ZP_06053673.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Grimontia hollisae CIP
101886]
gi|262219672|gb|EEY70988.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Grimontia hollisae CIP
101886]
Length = 182
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI V++++ F D RG+F +TY + L + + VFVQ+NHS S G +RGLH+Q
Sbjct: 7 NIPDVKLIEPTVFGDERGFFMETYRTALFNDHCGERVFVQENHSKS-KKGILRGLHYQTE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR ++G +FD+A+D+R+ SP +G WV +SA N Q+++P GFAHGF
Sbjct: 66 N-TQGKLVRVVSGEVFDVAIDMRKRSPYFGQWVGAYLSAENKRQLWVPEGFAHGFYVTSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E +YK TD+Y+ + + + W D ++ I WP+ D PS+S KD+
Sbjct: 125 EAEFVYKCTDYYNPDVEVSIKWNDAALGIDWPIADAGPPSLSAKDE 170
>gi|237714662|ref|ZP_04545143.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D1]
gi|262406527|ref|ZP_06083076.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_22]
gi|294806945|ref|ZP_06765768.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides xylanisolvens SD
CC 1b]
gi|229445431|gb|EEO51222.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D1]
gi|262355230|gb|EEZ04321.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_22]
gi|294445832|gb|EFG14476.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides xylanisolvens SD
CC 1b]
Length = 189
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 114/181 (62%), Gaps = 4/181 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F+D RG+F +++S + E + FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IEGVVIIEPRLFKDDRGYFFESFSQREFTEKVRKVDFVQDNESKS-SYGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLVR I G + D+AVDIR+ SPT+G V++E++ N Q +IP GFAHGF+ L
Sbjct: 67 YAQSKLVRVIKGSVLDVAVDIRKGSPTFGEHVAVELTEENHRQFFIPRGFAHGFVVLTEE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +FY+ + + +AW D ++ I W + D I+ +SEKD++ L + F+Y
Sbjct: 127 VIFQYKCDNFYAPQCEGALAWDDPALKIDWKVPADKII--LSEKDKHHERLEEASWLFDY 184
Query: 182 D 182
+
Sbjct: 185 N 185
>gi|297181613|gb|ADI17797.1| dtdP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[uncultured Sphingobacteriales bacterium HF0130_33B19]
Length = 182
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 111/179 (62%), Gaps = 4/179 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I + I+K + F D RG F ++++ K +++GL F QDN S S G +RGLHFQ
Sbjct: 6 LSIEGLLIIKPKVFGDERGHFFESWNKKAYQDIGLDLDFTQDNQSIS-QKGVLRGLHFQN 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PPYAQ KLVR I G + D+AVD+R+ S TYG +S++++ N +IP GFAHGF+ LE
Sbjct: 65 PPYAQGKLVRVIKGAVIDVAVDLRKGSLTYGQHISVKLTEQNMKTFWIPPGFAHGFVALE 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T YK T+ Y+ + + + W D ++I+W + + P VSEKD++ SPF
Sbjct: 125 NDTIFSYKCTEVYNQDAEGSLLWNDPDLNISWGVQN---PLVSEKDKHSCLFKNFKSPF 180
>gi|28872505|ref|NP_795124.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213970795|ref|ZP_03398919.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato T1]
gi|301383029|ref|ZP_07231447.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato Max13]
gi|302063434|ref|ZP_07254975.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato K40]
gi|302130652|ref|ZP_07256642.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|28855760|gb|AAO58819.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213924467|gb|EEB58038.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato T1]
Length = 181
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 107/172 (62%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ + F D RG+F ++++++ +E GL FVQDNHS S G +RGLH+Q A
Sbjct: 11 VLILEPKVFGDERGFFYESFNARAFQEATGLTRQFVQDNHSRS-QRGVLRGLHYQ-IENA 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR G++ D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L + E
Sbjct: 69 QGKLVRVTVGKVLDVAVDIRRSSPNFGRWVGVELSAENARQLWVPEGFAHGFVVLSEHAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD+Y+ + +AW D + I W PS+S KDQ L D
Sbjct: 129 FLYKTTDYYTPSAERCIAWNDPDLAIDWQFDGE--PSLSAKDQQGKSLKDAD 178
>gi|297171427|gb|ADI22429.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[uncultured Rhodospirillales bacterium HF0500_02H05]
Length = 205
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 110/183 (60%), Gaps = 4/183 (2%)
Query: 4 NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPP 62
PV + R D+RG F++T+ ++ + DV VQ+N S S T+RGLH+Q P
Sbjct: 12 GPVLFVPNRH-RDARGVFAETFRVDEFRD-AIGDVDLVQENQSISHPINTVRGLHYQAEP 69
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KL+R + G + D+AVDIR +SPT+G + +E+SA N Q++IP GFAHGF TL +
Sbjct: 70 HVQGKLMRVLQGAVLDVAVDIRPHSPTFGRHIKIELSAENWYQLWIPPGFAHGFKTLRPD 129
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
T V+YKV+D+YS HD G+AW D + I W L VS+KD+ P + + F
Sbjct: 130 THVMYKVSDYYSPSHDHGIAWNDADLGIDWELYGQ-QAVVSDKDRQQPRFCDVTAQFMAG 188
Query: 183 GLP 185
+P
Sbjct: 189 SIP 191
>gi|108759544|ref|YP_632778.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Myxococcus xanthus DK 1622]
gi|108463424|gb|ABF88609.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Myxococcus xanthus DK 1622]
Length = 183
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 114/185 (61%), Gaps = 9/185 (4%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +L+ + F D RG+F + + + +G+ FVQDN+S S GT+RG+HFQ
Sbjct: 6 LEIPDVLLLEPKVFGDDRGFFMEMFHAARYAAVGIPGPFVQDNYSRSAK-GTLRGVHFQE 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KLV+ +AG ++D+AVD+RR SPT+G WV++E+S++N Q++IP GFAHGF +
Sbjct: 65 P-QAQGKLVQVLAGAVYDVAVDVRRGSPTFGQWVAVELSSDNRRQLWIPPGFAHGFCVVS 123
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF- 179
+ + YK T Y+ E + V W D + I WP+ + +L S KD P L D+P
Sbjct: 124 DSADFHYKCTALYAPETERSVVWNDPDLAIPWPVSEPLL---SPKDAQAPRLR--DAPLL 178
Query: 180 -EYDG 183
EY G
Sbjct: 179 PEYVG 183
>gi|322433923|ref|YP_004216135.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidobacterium sp. MP5ACTX9]
gi|321161650|gb|ADW67355.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidobacterium sp. MP5ACTX9]
Length = 184
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 108/179 (60%), Gaps = 11/179 (6%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ--RPPY 63
V++++ R+F D RGWF++ ++++ GL FVQDN SFS G +RGLH+Q RP
Sbjct: 11 VKLIRPRRFGDDRGWFAEMFNTQAFAANGLPAQFVQDNQSFSAK-GVLRGLHYQLERP-- 67
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQ----IYIPTGFAHGFMTL 119
Q KLVRC++G I+D+AVD+RR SP +G W + ++ N ++IP GFAHGF+ L
Sbjct: 68 -QGKLVRCLSGHIWDVAVDLRRESPDFGKWAAFDLKPLNDAGELELLWIPEGFAHGFLVL 126
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
EV+YK TD Y + V W D ++ I WP L+ I PS+S KD + D P
Sbjct: 127 SETAEVLYKTTDLYHPLGERCVKWDDPTLAIPWP-LEGITPSISGKDALGKTFAEADLP 184
>gi|37678487|ref|NP_933096.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Vibrio vulnificus
YJ016]
gi|37197227|dbj|BAC93067.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Vibrio vulnificus
YJ016]
Length = 185
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 4/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I ++I++ F D RG+F +T+ +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 SIPEIKIIEPMVFGDERGFFMETWHQARFEELVTGKPTRFVQDNHSKS-KQGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ Q KLVR ++G +FD+AVDIR+ SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 MQ-HTQGKLVRVVSGEVFDVAVDIRQGSPTFGQWVGVYLSAENKRQMWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK TD+Y + + +AW D I I WP+ P +S+KD + P L++
Sbjct: 125 SEEAEFVYKCTDYYHPQSEQCIAWNDTVIGIDWPIPIGKGPMLSKKDASAPNLSE 179
>gi|29345874|ref|NP_809377.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides thetaiotaomicron
VPI-5482]
gi|29337767|gb|AAO75571.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides thetaiotaomicron
VPI-5482]
Length = 189
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 110/182 (60%), Gaps = 6/182 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F+D RG+F +++S + E + FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IEGVFIIEPRLFKDDRGYFFESFSQRKFNEKVRKVNFVQDNESKS-SYGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLVR I G + D+AVDIR+ SPT+G +VS+E++ +N Q +IP GFAHGF L
Sbjct: 67 YAQSKLVRVIKGAVLDVAVDIRKGSPTFGKYVSVELTEDNHRQFFIPRGFAHGFSVLTDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPFE 180
YK +FY+ + + +AW D + I W P + +L SEKD + L F
Sbjct: 127 VIFQYKCDNFYAPQSEGALAWDDPDLGIDWRVPANEIVL---SEKDNHHELLKDASWLFN 183
Query: 181 YD 182
Y+
Sbjct: 184 YN 185
>gi|126175090|ref|YP_001051239.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS155]
gi|125998295|gb|ABN62370.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS155]
Length = 187
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 107/168 (63%), Gaps = 6/168 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
I V+I++ + D RG+F +T++ + +EL G FVQDNHS S G +RGLH+Q
Sbjct: 13 KIPEVKIIEPAVYGDERGFFMETWNQQKFEELVTGKLTRFVQDNHSKS-KKGILRGLHYQ 71
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SP+YG WV +SA N Q+++P GFAHGF
Sbjct: 72 TEN-TQGKLVRVVSGEVFDVAVDIRKDSPSYGYWVGEYLSAENKRQLWVPEGFAHGFYVT 130
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E +YK T++Y+ + + W DKS+DI WP+ + P +S+KDQ
Sbjct: 131 SEEAEFVYKCTNYYNPNSEVSILWSDKSLDIKWPIQSS--PELSKKDQ 176
>gi|315023084|gb|EFT36097.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Riemerella anatipestifer
RA-YM]
gi|325336323|gb|ADZ12597.1| dTDP-4-dehydrorhamnose 3,5-epimerase related enzyme [Riemerella
anatipestifer RA-GD]
Length = 181
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 107/166 (64%), Gaps = 4/166 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
I++ FED RG+F Q ++ K ++L G+ FVQDN S S G +RGLH Q+ +AQA
Sbjct: 13 IIEPTIFEDERGYFYQKFNEKKFEDLTGMNGHFVQDNISKS-SYGVLRGLHLQKGEHAQA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLV C+ G+++D+AVD+R +SP++G W +E++A N LQ Y+P GFAHGF L
Sbjct: 72 KLVSCLEGKVWDVAVDLREDSPSFGKWYGVELTAENKLQFYVPRGFAHGFAVLSEMAVFA 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ-NLPF 171
YK +FY+ E + G+ W D + I W L +T + +SEKD+ LPF
Sbjct: 132 YKCDNFYNKESEGGILWNDADLAIDWKLDETDVI-LSEKDKVQLPF 176
>gi|300866607|ref|ZP_07111295.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oscillatoria sp. PCC 6506]
gi|300335379|emb|CBN56455.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oscillatoria sp. PCC 6506]
Length = 182
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 106/168 (63%), Gaps = 4/168 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I++ R F D RG+F ++++ + E G++ FVQDNHS S +RGLH+Q
Sbjct: 7 EIPEVLIIEPRVFGDDRGFFFESFNHRAFAEKTGVKAEFVQDNHSKSAQ-NVLRGLHYQM 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR G IFD+AVDIR+NSPT+G WV +SA N Q+++P GFAHGF+ +
Sbjct: 66 Q-QPQGKLVRVAMGEIFDVAVDIRKNSPTFGQWVGYLLSAENKRQLWVPAGFAHGFLVVS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
EV+YK T++Y+ EH+ + W D + I WPL D P +S KD++
Sbjct: 125 EVAEVLYKTTEYYAPEHERCILWNDPDLAIAWPLGDAT-PILSAKDRS 171
>gi|265764217|ref|ZP_06092785.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_16]
gi|263256825|gb|EEZ28171.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_16]
Length = 190
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/180 (42%), Positives = 111/180 (61%), Gaps = 4/180 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + IL+ R F+D RG+F ++++ + Q FVQDN S S G IRGLHFQ+P
Sbjct: 7 SIEGLVILEPRLFQDDRGYFFESFNQWEFESNVCQTTFVQDNESKS-SYGVIRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR I G + D+AVDIR+ SPT+G VS+E++ +N Q +IP GFAHGF L
Sbjct: 66 PFAQSKLVRVIKGAVLDVAVDIRKGSPTFGKHVSVELTEDNHRQFFIPRGFAHGFSVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFE 180
YK +FY E + +AW D ++I W + D ++ +S KD P L+ I+ F+
Sbjct: 126 EVIFQYKCDNFYHPEAEGAIAWNDPDLNIDWKIPQDRVI--LSGKDYTHPLLHNIELQFD 183
>gi|113868861|ref|YP_727350.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia eutropha H16]
gi|113527637|emb|CAJ93982.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia eutropha H16]
Length = 183
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 110/172 (63%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V +++ + F D RG+F +T++++ ++ G++ FVQDNHS S +RGLH+Q +
Sbjct: 13 VLVIEPQVFSDQRGFFMETFNAQAFEQATGIRRTFVQDNHSGSVR-NVLRGLHYQIQ-HP 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KL+R IAG +FD+AVD+R SPTYG WV + +SA + Q++IP GFAHGF+ L + E
Sbjct: 71 QGKLIRVIAGEVFDVAVDVRLGSPTYGKWVGVTVSAADKKQLWIPEGFAHGFLVLSEHAE 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
V+YK TD++ EH+ + W D ++ + WPL P ++ KD L + D
Sbjct: 131 VLYKTTDYWYPEHERTLLWNDPAVGVRWPLNGA--PLLTAKDAAGKLLTEAD 180
>gi|83645209|ref|YP_433644.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hahella chejuensis KCTC 2396]
gi|83633252|gb|ABC29219.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hahella chejuensis KCTC 2396]
Length = 179
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 105/175 (60%), Gaps = 6/175 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++ V I++ R F D RG+F +TY ++ E G++ FVQDNHS S G +RGLHFQ+
Sbjct: 7 KLSGVVIIEPRVFGDHRGFFMETYQVARYRNEAGIELEFVQDNHSRS-GRGVLRGLHFQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR G +FD+AVD+R+ S TYG W + +S N LQ YIP GFAHGF L
Sbjct: 66 TK-PQGKLVRVTQGEVFDVAVDLRKGSSTYGQWEGVILSGENHLQFYIPPGFAHGFCVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK TD+Y + G+ W D I I WP+ P++S+KD LP L +I
Sbjct: 125 ETADFQYKCTDYYDPADEGGLIWNDPDIGIVWPIES---PNLSQKDLALPTLREI 176
>gi|307564467|ref|ZP_07627008.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella amnii CRIS 21A-A]
gi|307346827|gb|EFN92123.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella amnii CRIS 21A-A]
Length = 184
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 110/168 (65%), Gaps = 3/168 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
NI V ++K + F+D RG+F +++ + K +G F+QDN S S G +RGLH+Q+
Sbjct: 7 NIKGVWLIKPKIFKDDRGYFFESFRQDEFDKNIGHHVEFIQDNESKS-SYGVLRGLHYQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
++QAKLVR I G++ D+AVD+RR+S TYG +V++E+S N Q++IP GFAHGF+ L
Sbjct: 66 GEFSQAKLVRIITGKVIDVAVDLRRSSTTYGKYVAVELSEENKCQLFIPRGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YKV + Y+ + ++ + W DK+I I WP +DT +SEKD N
Sbjct: 126 KEAIFSYKVDNIYAPQSEASIKWNDKTIGIEWP-IDTKDIVLSEKDLN 172
>gi|327399838|ref|YP_004340707.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hippea maritima DSM 10411]
gi|327182467|gb|AEA34648.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hippea maritima DSM 10411]
Length = 191
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 113/177 (63%), Gaps = 5/177 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I++ + F D+RG+F +T+ + ++ + F+QDN S S G +RGLH+Q PP+AQ
Sbjct: 11 VVIIELKVFGDNRGYFMETFRQDIFEKNVRKINFIQDNESKS-KRGVLRGLHYQLPPFAQ 69
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
+KLVR I G + D+AVDIR+ S T+G +V++E+S +N Q++IP GFAHGF+
Sbjct: 70 SKLVRVIKGSVIDVAVDIRKGSSTFGKYVAVELSEDNKKQLFIPRGFAHGFLVTSDEAIF 129
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFEY 181
YKV ++Y+ E+D + + D I+I W D IL VSEKD+N P L + FEY
Sbjct: 130 TYKVDNYYAPEYDRNIRFDDPDININWNFPKDKIL--VSEKDKNAPLLKDAEI-FEY 183
>gi|189461252|ref|ZP_03010037.1| hypothetical protein BACCOP_01902 [Bacteroides coprocola DSM 17136]
gi|189432069|gb|EDV01054.1| hypothetical protein BACCOP_01902 [Bacteroides coprocola DSM 17136]
Length = 189
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 109/181 (60%), Gaps = 6/181 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V I++ R F+D RG+F +++S + FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IDGVVIIEPRLFKDDRGYFFESFSERDFNAQVRTVRFVQDNESKS-SYGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ+KLVR + G + D+AVDIR+ SPT+G V++E++ N Q +IP GFAHGF L
Sbjct: 67 FAQSKLVRVVKGAVLDVAVDIRKGSPTFGQHVAVELTEENHRQFFIPRGFAHGFSVLTDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPFE 180
YK +FY+ + + +AW D ++ I W P IL SEKD++ P L D F
Sbjct: 127 VIFQYKCDNFYAPQSEGAIAWDDPALGIDWKIPAEKVIL---SEKDKHHPLLKDADWLFS 183
Query: 181 Y 181
Y
Sbjct: 184 Y 184
>gi|167757831|ref|ZP_02429958.1| hypothetical protein CLOSCI_00162 [Clostridium scindens ATCC 35704]
gi|167664485|gb|EDS08615.1| hypothetical protein CLOSCI_00162 [Clostridium scindens ATCC 35704]
Length = 202
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/140 (51%), Positives = 90/140 (64%), Gaps = 2/140 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
DSRG+F +TY+ + ++E GL FVQDN S S G +RGLHFQ+ + Q KLVR I G
Sbjct: 26 DSRGYFMETYNQRDMEEAGLTMNFVQDNQSCSTK-GVLRGLHFQKE-FPQGKLVRAIKGS 83
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R NS TYG W +E++ N Q YIP GFAHGF+ L E YK TDFY
Sbjct: 84 VFDVAVDLRSNSETYGKWFGIELTEENKKQFYIPEGFAHGFLVLSEIAEFCYKCTDFYHP 143
Query: 136 EHDSGVAWQDKSIDITWPLL 155
+ G+AW D I I WP L
Sbjct: 144 GDEGGLAWNDPEIGIKWPQL 163
>gi|253567875|ref|ZP_04845286.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 1_1_6]
gi|251841948|gb|EES70028.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 1_1_6]
Length = 189
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 110/182 (60%), Gaps = 6/182 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F+D RG+F +++S + E + FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IEGVFIIEPRLFKDDRGYFFESFSQREFNEKVRKVNFVQDNESKS-SYGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLVR I G + D+AVDIR+ SPT+G +VS+E++ +N Q +IP GFAHGF L
Sbjct: 67 YAQSKLVRVIKGAVLDVAVDIRKGSPTFGKYVSVELTEDNHRQFFIPRGFAHGFSVLTDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPFE 180
YK +FY+ + + +AW D + I W P + +L SEKD + L F
Sbjct: 127 VIFQYKCDNFYAPQSEGALAWDDPDLGIDWRVPANEIVL---SEKDNHHELLKDASWLFN 183
Query: 181 YD 182
Y+
Sbjct: 184 YN 185
>gi|288869616|ref|ZP_05975254.2| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanobrevibacter smithii
DSM 2374]
gi|288860621|gb|EFC92919.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanobrevibacter smithii
DSM 2374]
Length = 188
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 103/173 (59%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + +++ + D+RG+F +TY+ K K+ G FVQDN S SF G +RGLH Q
Sbjct: 13 DIEGMFVVEPAVYGDNRGYFMETYNEKDFKDAGYDLTFVQDNQSQSFK-GVLRGLHLQLK 71
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR I G +FD+ VD+R +SPTYG W +SA N Q+YIP FAHGF+ L
Sbjct: 72 -YPQGKLVRVIKGEVFDVGVDLRADSPTYGKWYGEILSAENKKQLYIPPKFAHGFVVLSD 130
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T+FY E + G+ W D I + WPL ++S+KD+ L +
Sbjct: 131 EAEFVYKCTEFYHGEDEGGIMWNDPDIAVEWPLGGIDEITLSDKDKKWKTLKE 183
>gi|160893016|ref|ZP_02073804.1| hypothetical protein CLOL250_00554 [Clostridium sp. L2-50]
gi|156865099|gb|EDO58530.1| hypothetical protein CLOL250_00554 [Clostridium sp. L2-50]
Length = 200
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/151 (48%), Positives = 94/151 (62%), Gaps = 2/151 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ DSRG+F +TY+ K ++E GL VFVQDN S S G +RGLHFQ+
Sbjct: 11 IEGLYIIEPAVHGDSRGYFMETYNQKDMEENGLNMVFVQDNQSMS-TKGVLRGLHFQKE- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR I G ++D+AVD+R S TYG W +E++ N Q YI GFAHGF+ L
Sbjct: 69 FPQGKLVRVIKGAVYDVAVDLRSGSETYGKWYGVELTEENKKQFYISEGFAHGFLVLSDT 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWP 153
E YKVTDFY + G+AW D I I WP
Sbjct: 129 AEFCYKVTDFYHPGDEGGLAWNDPEIGIEWP 159
>gi|291460665|ref|ZP_06600055.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oribacterium sp. oral taxon
078 str. F0262]
gi|291416624|gb|EFE90343.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oribacterium sp. oral taxon
078 str. F0262]
Length = 213
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 99/163 (60%), Gaps = 5/163 (3%)
Query: 5 PVR---ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
P+R I++ DSRG+F +TY+ + ++E GL FVQDN S S G +RGLHFQ+
Sbjct: 19 PIRGLYIIEPAVHGDSRGYFMETYNQRDMEEAGLNMRFVQDNQSMSVR-GVLRGLHFQKQ 77
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR I GR++D+AVD+R S +YG +E++A N Q YI GFAHGF+ L
Sbjct: 78 -YPQGKLVRVIRGRVYDVAVDLREGSESYGEHFGVELTAENHRQFYISEGFAHGFLVLSE 136
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSE 164
E YKVTDFY + G+AW D + I WP L P ++
Sbjct: 137 EAEFCYKVTDFYRPGDEGGIAWNDPELHIDWPELTGTYPGSAD 179
>gi|146280479|ref|YP_001170632.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas stutzeri A1501]
gi|14717005|emb|CAC44167.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas stutzeri]
gi|145568684|gb|ABP77790.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas stutzeri A1501]
Length = 181
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 109/167 (65%), Gaps = 7/167 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ- 59
+I V I++ + F D RG+F +++++ + GL+ FVQDNHS S G +RGLH+Q
Sbjct: 7 SIPDVLIIEPKVFGDERGFFYESFNAAAFEAATGLKRQFVQDNHSKS-QRGVLRGLHYQI 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P Q KLVR +AG +FD+AVD+R++SP++G W +SA N Q++IP GFAHGF+ L
Sbjct: 66 QQP--QGKLVRVVAGEVFDVAVDLRKSSPSFGRWFGTHLSAQNQRQLWIPEGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ E +YK TD+Y+ EH+ + W D + I WPL + P +S KD
Sbjct: 124 SESAEFLYKTTDYYAPEHERSLLWNDPELGIEWPLDEA--PQLSAKD 168
>gi|325662387|ref|ZP_08150996.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471389|gb|EGC74612.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lachnospiraceae bacterium
4_1_37FAA]
Length = 185
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I ++++ F D RG+F +TY+ KE G+ FVQDN S S G +RGLHFQ
Sbjct: 11 IEGLKVITPTVFGDERGYFMETYNYNDYKEAGIDMEFVQDNQSSS-KKGVLRGLHFQ-IN 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR ++G +FD+AVD+R S TYG W + +SA N Q +IP FAHGF+ L
Sbjct: 69 FPQDKLVRVVSGEVFDVAVDLREGSKTYGQWYGVLLSAENKKQFFIPKDFAHGFLVLSDT 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E YK TDFY + G+AW D I I WP+ + + ++SEKDQ
Sbjct: 129 AEFAYKCTDFYHPNDEGGLAWNDPDIGIQWPIPEGMELTISEKDQK 174
>gi|313676578|ref|YP_004054574.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Marivirga tractuosa DSM 4126]
gi|312943276|gb|ADR22466.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Marivirga tractuosa DSM 4126]
Length = 192
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 114/186 (61%), Gaps = 10/186 (5%)
Query: 1 MNINPVR-----ILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIR 54
MNI P I++ +EDSRG+F +++ K ++ G++ FVQDN S S G IR
Sbjct: 10 MNITPTDFDDLFIIEPTVYEDSRGYFFESFHQKKFEDATGIKCEFVQDNQSRSLH-GVIR 68
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
GLH Q PP AQAKLVR + G + D+ VD+R++ PT+G S+ +SA N Q++IP GFAH
Sbjct: 69 GLHMQVPPMAQAKLVRVLRGEVLDVVVDLRKDKPTFGKSFSIHLSAENKQQLFIPRGFAH 128
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ-NLPFLN 173
G L E YK ++YS E++ G+ + D S++I W +D+ +SEKDQ NL F +
Sbjct: 129 GIAVLSKEAEFFYKCDNYYSPENERGIIYNDASLNIDWK-IDSEKRIISEKDQKNLDFFS 187
Query: 174 QIDSPF 179
SPF
Sbjct: 188 -FSSPF 192
>gi|187476639|ref|YP_784662.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Bordetella avium 197N]
gi|115421225|emb|CAJ47730.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Bordetella avium 197N]
Length = 190
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 114/194 (58%), Gaps = 15/194 (7%)
Query: 1 MNINP-----VRILKTRKFEDSRGWFSQTYSSKL----LKELGLQ--DVFVQDNHSFSFD 49
MN +P V +L + F D+RGWF++ + + L+ LGL FVQ+NHS S
Sbjct: 1 MNFSPTTLPGVVLLDPKVFADARGWFAERFRQDVFEAGLRALGLPVPAPFVQENHSCSRQ 60
Query: 50 CGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIP 109
G +RGLH+Q P+AQ KLV G IFD+ VDIR +SPT+G W + +SA N ++IP
Sbjct: 61 -GVLRGLHYQLAPHAQGKLVSVAVGEIFDVTVDIRPDSPTFGRWQGVTLSAVNRRSLWIP 119
Query: 110 TGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
G+AHGF++L +EV YK T +YS H+ + W D + I WP ++L SE+D+
Sbjct: 120 AGYAHGFLSLSGPSEVHYKTTAYYSPAHERSLRWNDPFMGIVWPAEVSLL---SERDERA 176
Query: 170 PFLNQIDSPFEYDG 183
P L + + + DG
Sbjct: 177 PGLQEALASGQLDG 190
>gi|298484711|ref|ZP_07002813.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298160744|gb|EFI01763.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 181
Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 107/172 (62%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ + F D RG+F ++++++ + GL FVQDNHS S G +RGLH+Q A
Sbjct: 11 VLILEPKVFGDERGFFYESFNARAFQAATGLTREFVQDNHSRS-QQGVLRGLHYQ-IENA 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR G++ D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L N E
Sbjct: 69 QGKLVRVTVGKVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLSENAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD+Y+ + +AW D + I W P++S KDQ L + D
Sbjct: 129 FLYKTTDYYTPSAERCIAWNDPDLAIDWQFDGQ--PNLSAKDQQGKRLEEAD 178
>gi|60680555|ref|YP_210699.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Bacteroides fragilis NCTC
9343]
gi|253563576|ref|ZP_04841033.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Bacteroides sp. 3_2_5]
gi|5199112|gb|AAD40710.1|AF048749_6 dTDP-6-deoxy-D-glucose-3,5 epimerase [Bacteroides fragilis]
gi|60491989|emb|CAH06750.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Bacteroides fragilis NCTC
9343]
gi|251947352|gb|EES87634.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Bacteroides sp. 3_2_5]
Length = 182
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 107/175 (61%), Gaps = 6/175 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + IL+ + F+D RG+F ++++ + +E + FVQDN S S G IRGLHFQ+PP
Sbjct: 8 IEGLVILEPQLFKDDRGYFFESFNQREFEEKVCKTTFVQDNESKS-SYGVIRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ+KLVR I G + D+AVDIR+ SPT+G VS+E++ +N Q +IP GFAHGF L
Sbjct: 67 FAQSKLVRVIKGAVLDVAVDIRKGSPTFGKHVSVELTEDNHRQFFIPRGFAHGFSVLSEE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQI 175
YK +FY E + +AW D + I W P IL S+KD+ P L I
Sbjct: 127 VIFQYKCDNFYHPEAEGAIAWNDPDLGIEWRVPCKSIIL---SKKDRVHPLLKYI 178
>gi|253579894|ref|ZP_04857162.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848893|gb|EES76855.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 184
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 101/165 (61%), Gaps = 2/165 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I +++++ F D+RG+F +TY+ KE G+ FVQDN S S G +RGLHFQ
Sbjct: 11 GIKGLKVVEPTVFGDARGYFMETYNYNDFKEAGIDVEFVQDNQSSSHK-GVLRGLHFQ-I 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G +FD+AVD+R S TYG W + +SA N Q +IP GFAHGF+ L
Sbjct: 69 NYPQDKLVRVVNGEVFDVAVDLREGSETYGKWFGVVLSAENKKQFFIPKGFAHGFLVLSE 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ E +YK +DFY + G+ W D I + WP+ + + S S+KD
Sbjct: 129 HAEFVYKCSDFYHPNDEGGLIWNDPDIGVEWPIPEGMELSFSDKD 173
>gi|251771903|gb|EES52477.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospirillum
ferrodiazotrophum]
Length = 184
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 102/170 (60%), Gaps = 5/170 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +L + DSRG+F +++ +K LGL +FVQDNHS S G RGLH+Q+ + Q
Sbjct: 11 VLLLVPKVHGDSRGFFLESFHAKTFSRLGLPQLFVQDNHSRSVR-GVTRGLHYQKR-HGQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G +FD+AVD+R +SPT+ W +S N +YIP GFAHGF + +
Sbjct: 69 GKLVRVVRGSVFDVAVDLRPDSPTFSRWFGTTLSEENHAMLYIPEGFAHGFQVTSESADF 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+YK TDFY + + G+ W D + + WP+ + L S+KD LP L+ +
Sbjct: 129 LYKCTDFYDPQDEGGILWNDPEVGVVWPIAEAAL---SKKDAALPLLSAV 175
>gi|29726002|gb|AAO88932.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]
Length = 183
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 106/167 (63%), Gaps = 7/167 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPTVFGDERGFFMETWNQKRFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SPT+G WV + +SA N Q++IP GF HGF
Sbjct: 66 TEN-TQGKLVRVVSGEVFDVAVDIRKDSPTFGKWVGVYLSAENKRQLWIPKGFLHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ E +YK TD+YS EH+ + W D ++I WP IL SEKD
Sbjct: 125 SESAEFVYKCTDYYSPEHEVSIIWNDVDLNIKWPSGRYIL---SEKD 168
>gi|198276704|ref|ZP_03209235.1| hypothetical protein BACPLE_02903 [Bacteroides plebeius DSM 17135]
gi|198270229|gb|EDY94499.1| hypothetical protein BACPLE_02903 [Bacteroides plebeius DSM 17135]
Length = 191
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 112/183 (61%), Gaps = 8/183 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDC-GTIRGLHFQR 60
I V I++ R F+D RG+F +++S + + FVQDN S S C G +RGLHFQ+
Sbjct: 7 EIEGVVIIEPRLFKDERGYFFESFSQRDFDKQVRTIHFVQDNESKS--CYGVLRGLHFQK 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ+KLVR I G + D+AVDIR+ SPT+G V++E++ +N Q +IP GFAHGF L
Sbjct: 65 PPFAQSKLVRVIKGAVLDVAVDIRKGSPTFGQHVAVELTEDNHRQFFIPRGFAHGFSVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSP 178
YK +FY+ + + +AW D ++ I W P IL SEKD++ P L +
Sbjct: 125 DEVIFQYKCDNFYAPQSEGAIAWNDPALKIDWRIPTEKVIL---SEKDKHHPLLADAEWL 181
Query: 179 FEY 181
F+Y
Sbjct: 182 FDY 184
>gi|330874358|gb|EGH08507.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 181
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 107/172 (62%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ + F D RG+F ++++++ ++ GL FVQDNHS S G +RGLH+Q A
Sbjct: 11 VLILEPKVFGDERGFFYESFNARAFQQATGLTRQFVQDNHSRS-QRGVLRGLHYQ-IENA 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR G++ D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L + E
Sbjct: 69 QGKLVRVTVGKVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLSEHAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD+Y+ + +AW D + I W PS+S KDQ L D
Sbjct: 129 FLYKTTDYYTPSAERCIAWNDPDLAIDWQF--DAEPSLSAKDQQGKSLKDAD 178
>gi|120612800|ref|YP_972478.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidovorax citrulli AAC00-1]
gi|120591264|gb|ABM34704.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidovorax citrulli AAC00-1]
Length = 181
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 113/183 (61%), Gaps = 12/183 (6%)
Query: 1 MNINP-----VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIR 54
MN+ P V +L+ + F D+RG+F ++++ + E G + FVQDNHS S G +R
Sbjct: 1 MNVLPTSIPDVVVLEPKVFGDARGFFFESFNQRAFDEATGSRHAFVQDNHSRS-ARGVLR 59
Query: 55 GLHFQ-RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFA 113
GLH+Q R P Q KLVR + G +FD+AVD+RR+SPT+G WV E+S N Q+++P GFA
Sbjct: 60 GLHYQIRQP--QGKLVRVVRGTVFDVAVDLRRSSPTFGQWVGEELSEENQRQMWVPPGFA 117
Query: 114 HGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
HGF+ L + + +YK TD+Y+ EH+ +AW D + I W PS+S KD L
Sbjct: 118 HGFVVLSESADFLYKTTDYYAPEHERCIAWNDPELGIDWRFAGE--PSLSAKDAKGAALR 175
Query: 174 QID 176
+ +
Sbjct: 176 EAE 178
>gi|319791467|ref|YP_004153107.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Variovorax paradoxus EPS]
gi|315593930|gb|ADU34996.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Variovorax paradoxus EPS]
Length = 184
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 112/181 (61%), Gaps = 11/181 (6%)
Query: 1 MNINP-----VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIR 54
M I+P V IL+ + F D+RG+F ++Y+ ++ + D+ F QDNHS S G +R
Sbjct: 1 MKISPTIIPDVLILEPKVFGDARGFFLESYNEEVFRRATGSDLAFKQDNHSRS-SKGVLR 59
Query: 55 GLHFQ-RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFA 113
GLH+Q + P Q KLVR + G +FD+AVDIR SPT+G WV +E++ +N Q+++P G A
Sbjct: 60 GLHYQVKQP--QGKLVRVVQGAVFDVAVDIRPTSPTFGKWVGVELNESNHRQLWVPPGLA 117
Query: 114 HGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
HGF+ L + +YK TD+Y+ H+ +AW D +I I WP L P +S KD P L
Sbjct: 118 HGFLVLSETADFLYKTTDYYAPAHERSIAWNDPAIGIDWP-LSGASPVLSAKDAAAPTLA 176
Query: 174 Q 174
+
Sbjct: 177 E 177
>gi|330815727|ref|YP_004359432.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia gladioli BSR3]
gi|327368120|gb|AEA59476.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia gladioli BSR3]
Length = 183
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 112/175 (64%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V+I++ + F D+RG+F ++++ + E + Q VFVQDNHS S G +RGLH+Q
Sbjct: 10 LSEVKIIEPKVFGDARGFFYESFNGREFAEKVDPQAVFVQDNHSRS-ARGVLRGLHYQ-I 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR IAG + D+AVDIR++SP +G WV + +SA N Q+++P GFAHGF+TL
Sbjct: 68 EHAQGKLVRVIAGEVLDVAVDIRKSSPNFGKWVGVRLSAENARQLWVPPGFAHGFVTLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD++ E + + W D ++ I W + P ++ KD L Q D
Sbjct: 128 SAEFLYKTTDYWYPEFERSIVWNDPALGIDWQI--DFEPQLAAKDAAGSRLAQAD 180
>gi|296121781|ref|YP_003629559.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Planctomyces limnophilus DSM
3776]
gi|296014121|gb|ADG67360.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Planctomyces limnophilus DSM
3776]
Length = 181
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 105/171 (61%), Gaps = 8/171 (4%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ--RPPYAQA 66
++ R F DSRG+F + + + GL FVQDN S S GT+RGLHFQ RP QA
Sbjct: 15 IEPRVFGDSRGFFFEVFQQERYSSSGLSQAFVQDNVSRS-SRGTLRGLHFQLVRP---QA 70
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KL++ I G IFD+AVD+R++SPT+G W +S N Q+YIP GFAHGF + +V+
Sbjct: 71 KLIQVIRGEIFDVAVDVRKSSPTFGQWTGYRLSDVNHHQLYIPAGFAHGFCVISETADVL 130
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
YK TD+Y +H+ + W D ++ I WPL D P +S KDQ L ++S
Sbjct: 131 YKCTDYYFPQHERCLLWNDPAVGIAWPLED--FPILSAKDQQGQTLANLES 179
>gi|224539523|ref|ZP_03680062.1| hypothetical protein BACCELL_04428 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518861|gb|EEF87966.1| hypothetical protein BACCELL_04428 [Bacteroides cellulosilyticus
DSM 14838]
Length = 182
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 111/175 (63%), Gaps = 4/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ F+D RG+F ++++ + +E + FVQDN S S G IRGLHFQ+PP
Sbjct: 8 IEGVVIIEPHLFKDERGYFFESFNQREFEEKVCKTTFVQDNESKS-SYGVIRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ+KLVR + G + D+AVDIR+ SPT+G V++E++ NN Q++IP GFAHGF L
Sbjct: 67 FAQSKLVRVVKGAVLDVAVDIRKGSPTFGKHVAVELTENNHCQLFIPRGFAHGFSVLSEE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQID 176
YK + Y+ E + +AW D + I W + +D +L +SEKD+ L +++
Sbjct: 127 VIFQYKCDNKYAPESEGAIAWGDPDLRIDWRIPMDKVL--LSEKDKQHSNLKEVN 179
>gi|296315137|ref|ZP_06865078.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria polysaccharea ATCC
43768]
gi|296837942|gb|EFH21880.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria polysaccharea ATCC
43768]
Length = 185
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/161 (47%), Positives = 99/161 (61%), Gaps = 4/161 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+ILK + F+D RG+F +T+ KE FVQ+NHS S G +RGLH+Q Q
Sbjct: 11 VKILKPQVFKDGRGFFMETFRDGWFKENIADRNFVQENHSQSRK-GVLRGLHYQTE-NTQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR IAG +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L EV
Sbjct: 69 GKLVRAIAGEVFDVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFYVLSDTAEV 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK TD+Y E + + W D +I I WPL T P +S KD
Sbjct: 129 MYKCTDYYKPEAEQVLIWNDPAIGIGWPLQTT--PLLSPKD 167
>gi|296274085|ref|YP_003656716.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Arcobacter nitrofigilis DSM
7299]
gi|296098259|gb|ADG94209.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Arcobacter nitrofigilis DSM
7299]
Length = 189
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 112/182 (61%), Gaps = 1/182 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V IL F D RG+F ++YS + E GL F+QDN S++ T RG H+Q P
Sbjct: 8 LDGVLILNPHVFNDERGFFYESYSKRKFLENGLDYNFIQDNQSYNKYKHTFRGFHYQMNP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+Q LVR ++G I D +DIR+ SPTYG +VS +S++N Q+ IP GFAHG++TL N
Sbjct: 68 KSQTTLVRVVSGEIIDYVIDIRKKSPTYGQYVSQILSSDNHKQMLIPKGFAHGYLTLTDN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
++YK+ + YS HD + + D +I+I + + L +++KD + P L QID+ F Y+
Sbjct: 128 VTILYKMDELYSPNHDRILNFMDSTINIKLNIDKSELI-IADKDNSAPMLAQIDNNFLYE 186
Query: 183 GL 184
+
Sbjct: 187 EM 188
>gi|224023786|ref|ZP_03642152.1| hypothetical protein BACCOPRO_00502 [Bacteroides coprophilus DSM
18228]
gi|224017008|gb|EEF75020.1| hypothetical protein BACCOPRO_00502 [Bacteroides coprophilus DSM
18228]
Length = 189
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 109/176 (61%), Gaps = 4/176 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
IL+ R F D RG+F +++S + E + FVQDN S S G +RGLHFQ+PP+ Q+K
Sbjct: 13 ILEPRIFRDDRGYFFESFSQRTFNEEVREIHFVQDNESKS-SYGVVRGLHFQKPPFTQSK 71
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR I G + D+AVDIRR SPT+G +V +E++ N Q ++P GFAHGF L Y
Sbjct: 72 LVRVIQGAVLDVAVDIRRGSPTFGQYVKVELTGENHRQFFVPRGFAHGFSVLTDEVVFQY 131
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFEYD 182
K +FY+ + + +AW D + I W + D ++ +SEKD++ P L + F+++
Sbjct: 132 KCDNFYAPQSEGAIAWDDPDLGIDWQIPADKVI--LSEKDKHHPRLKDAEWLFDWN 185
>gi|224535678|ref|ZP_03676217.1| hypothetical protein BACCELL_00542 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522716|gb|EEF91821.1| hypothetical protein BACCELL_00542 [Bacteroides cellulosilyticus
DSM 14838]
Length = 189
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 111/181 (61%), Gaps = 6/181 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F+D RG F ++++ K +E + FVQDN S S G IRGLHFQ+ P
Sbjct: 8 IEGVVIIEPRLFKDGRGCFFESFNQKEFEEKVCKTTFVQDNESKS-SYGVIRGLHFQKTP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ+KLVR + G + D+AVDIR+ SPT+G V++E++ NN Q++IP GFAHGF L
Sbjct: 67 FAQSKLVRVVKGTVLDVAVDIRKGSPTFGQHVAVELTENNYRQLFIPRGFAHGFSVLSEE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPFE 180
YK +FY + + +AW D ++I W P + IL SEKD+ P L + F+
Sbjct: 127 VVFQYKCDNFYVPQSECALAWDDLELNIDWRIPAENVIL---SEKDRAHPNLRNSEWLFD 183
Query: 181 Y 181
Y
Sbjct: 184 Y 184
>gi|224184715|gb|ACN39588.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga
canimorsus]
Length = 189
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 107/174 (61%), Gaps = 6/174 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ F D RG+F +++S + E + FVQDN S S G +RGLHFQ+P
Sbjct: 7 EIKDVIIIEPEIFGDERGYFFESFSQEKFVEQVCKTTFVQDNESKS-RYGVVRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P++Q+KLVR + G++ D+AVDIR+ SPT+G V++E+SA N Q+++P GFAHGF L
Sbjct: 66 PFSQSKLVRVVVGKVLDVAVDIRKGSPTFGKHVAVELSAENKRQLFVPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLN 173
YK ++Y+ + + V W D ++ I W P D IL S+KD+ P L
Sbjct: 126 EVIFQYKCDNYYNPKEEGSVLWNDPALQIDWKIPHQDIIL---SQKDKESPLLK 176
>gi|167623420|ref|YP_001673714.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella halifaxensis
HAW-EB4]
gi|167353442|gb|ABZ76055.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella halifaxensis
HAW-EB4]
Length = 184
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 109/169 (64%), Gaps = 6/169 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 SIPDVKIIEPSVFGDERGFFMETWNQKKFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR+ SPT+G WV +SA+N Q+++P GFAHGF
Sbjct: 66 IEN-TQGKLVRVVSGEVFDVAVDIRKGSPTFGQWVGEYLSADNKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK TDFY+ + + + W D+S+ I WPL + +P +SEKD N
Sbjct: 125 SNEAEFVYKCTDFYNPKAEISLFWADESLAINWPL--SGIPMLSEKDIN 171
>gi|294645676|ref|ZP_06723363.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides ovatus SD CC 2a]
gi|292638955|gb|EFF57286.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides ovatus SD CC 2a]
Length = 179
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 113/178 (63%), Gaps = 4/178 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I++ R F+D RG+F +++S + E + FVQDN S S G +RGLHFQ+PPYAQ
Sbjct: 1 VVIIEPRLFKDDRGYFFESFSQREFTEKVRKVDFVQDNESKS-SYGVLRGLHFQKPPYAQ 59
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
+KLVR I G + D+AVDIR+ SPT+G V++E++ N Q +IP GFAHGF+ L
Sbjct: 60 SKLVRVIKGSVLDVAVDIRKGSPTFGEHVAVELTEENHRQFFIPRGFAHGFVVLTEEVIF 119
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK +FY+ + + +AW D ++ I W + D I+ +SEKD++ L + F+Y+
Sbjct: 120 QYKCDNFYAPQCEGALAWDDPALKIDWKVPADKII--LSEKDKHHERLEEASWLFDYN 175
>gi|167586360|ref|ZP_02378748.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ubonensis Bu]
Length = 183
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 111/162 (68%), Gaps = 5/162 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ + F D+RG+F ++++++ E V FVQDNHS S + G +RGLH+Q +A
Sbjct: 13 VKIIEPKVFGDARGYFYESFNAREFAEQVEPGVEFVQDNHSRS-EKGVLRGLHYQIQ-HA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR I G +FD+AVDIR++SPT+G WV + +SA N Q+++P GFAHGF+ L + E
Sbjct: 71 QGKLVRVIQGEVFDVAVDIRKSSPTFGEWVGVYLSAANHRQLWVPAGFAHGFLALTASCE 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK TDF+ E++ + W D + ITWP LDT P ++ KD
Sbjct: 131 FLYKTTDFWYPEYERCLQWNDPDVGITWP-LDT-PPVLATKD 170
>gi|300776431|ref|ZP_07086289.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chryseobacterium gleum ATCC
35910]
gi|300501941|gb|EFK33081.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chryseobacterium gleum ATCC
35910]
Length = 181
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 105/166 (63%), Gaps = 7/166 (4%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
I++ FED RG+F + ++ K +EL G+ FVQDN S S G +RGLH Q+ +AQA
Sbjct: 13 IIEPTIFEDERGYFFEKFNEKKFEELTGMNGHFVQDNISKS-SYGVLRGLHLQKGEHAQA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLV C+ G ++D+AVD+R +SPT+G W +E++A N LQ+Y+P GF HGF L +
Sbjct: 72 KLVSCLEGSVWDVAVDLREDSPTFGKWFGIELTAENKLQLYVPRGFGHGFSVLSTHAVFS 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLP 170
YK +FYS E + V + D ++I W + D IL SEKDQN P
Sbjct: 132 YKCDNFYSKESEGSVKFNDPDLNIDWKVDEKDAIL---SEKDQNAP 174
>gi|331018758|gb|EGH98814.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 181
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 106/172 (61%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ + F D RG+F ++++++ +E GL FVQDNHS S G +RGLH+Q A
Sbjct: 11 VLILEPKVFGDERGFFYESFNARAFQEATGLTRQFVQDNHSRS-QRGVLRGLHYQ-IENA 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR G++ D+AVDIRR SP +G WV +E+SA N Q+++P GFAHGF+ L + E
Sbjct: 69 QGKLVRVTVGKVLDVAVDIRRTSPNFGRWVGVELSAENARQLWVPEGFAHGFVVLSEHAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD+Y+ + +AW D + I W PS+S KDQ L D
Sbjct: 129 FLYKTTDYYTPSAERCIAWNDPDLAIDWQFNGE--PSLSVKDQQGKSLKDAD 178
>gi|253563189|ref|ZP_04840646.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_2_5]
gi|265762927|ref|ZP_06091495.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_16]
gi|251946965|gb|EES87247.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_2_5]
gi|263255535|gb|EEZ26881.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_16]
Length = 191
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 110/182 (60%), Gaps = 6/182 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V I++ R F D RG+F ++++ + E + +FVQDN S S G IRGLHFQ+P
Sbjct: 7 DIKSVVIIEPRLFRDERGYFFESFNQNVFIEKVCKTMFVQDNESKS-SYGVIRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR + G + D+AVDIR+ SPT+G +S+E++ +N Q +IP GFAHGF L
Sbjct: 66 PFAQSKLVRVVKGAVLDVAVDIRKGSPTFGKHISVELTEDNHRQFFIPRGFAHGFSVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPF 179
YK +FY+ + + +AW D + I W P+ + IL SEKD L F
Sbjct: 126 EVVFQYKCDNFYAPQCEGAIAWDDPDLGIDWKIPMEEVIL---SEKDSCHSALKDAAWLF 182
Query: 180 EY 181
+Y
Sbjct: 183 DY 184
>gi|225016237|ref|ZP_03705429.1| hypothetical protein CLOSTMETH_00140 [Clostridium methylpentosum
DSM 5476]
gi|224950995|gb|EEG32204.1| hypothetical protein CLOSTMETH_00140 [Clostridium methylpentosum
DSM 5476]
Length = 182
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 102/174 (58%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I+ +F+D+RG+F +TY+ + GL FVQDN S S G +RGLHFQ+
Sbjct: 10 GIKDLYIIDNARFDDARGYFMETYNKQDFDAAGLTMNFVQDNQSKS-TKGVLRGLHFQKT 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G ++D+AVD+R S TYG W + +S N Q Y+P GFAHGF+ L
Sbjct: 69 -HPQGKLVRVTKGAVYDVAVDLRPGSETYGKWHGVTLSEENHRQFYVPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TDFY E + + W D + I WP+ + + +S+KD+ P L I
Sbjct: 128 VAEFVYKCTDFYHPEDEGALFWNDPDVGIDWPITEDMTILLSDKDKKNPLLKDI 181
>gi|33591366|ref|NP_879010.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bordetella pertussis Tohama
I]
gi|33594889|ref|NP_882532.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bordetella parapertussis
12822]
gi|33599164|ref|NP_886724.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bordetella bronchiseptica
RB50]
gi|33564965|emb|CAE39912.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bordetella parapertussis]
gi|33571008|emb|CAE40487.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bordetella pertussis Tohama
I]
gi|33575210|emb|CAE30673.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bordetella bronchiseptica
RB50]
gi|332380767|gb|AEE65614.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bordetella pertussis CS]
Length = 182
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 112/178 (62%), Gaps = 4/178 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ + F D RG F ++++ +L +LG + FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIADVVLIEPQVFGDERGCFFESFNQDRLDAQLGRRIRFVQDNHSCS-RAGVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ QAKLVR +AG +D+AVD+RR SPT+G W +SA N Q++IP GFAHGF+ L
Sbjct: 65 -ILHPQAKLVRVVAGEAYDVAVDLRRGSPTFGRWTGAYLSARNRHQLWIPEGFAHGFLAL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+TE +YK TD+Y+ EH+ V W D + + WPL P +S KD+ L + D+
Sbjct: 124 SDDTECLYKATDYYAPEHERCVRWDDPQLKVDWPLQGQA-PILSVKDRQGVALARADT 180
>gi|332885219|gb|EGK05470.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dysgonomonas mossii DSM
22836]
Length = 197
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 108/183 (59%), Gaps = 8/183 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDC-GTIRGLHFQRP 61
I V I++ + F D RG+F ++Y+ FVQDN S S C G +RGLHFQ+P
Sbjct: 9 IKDVVIIEPKIFGDDRGYFFESYNQAEFNTSIRTVHFVQDNESKS--CYGVLRGLHFQKP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR I G + D+AVDIRRNSPT+G V++ +S N Q++IP GFAHGF+ L
Sbjct: 67 PFAQSKLVRVIEGEVLDVAVDIRRNSPTFGKHVAVILSGENHRQLFIPRGFAHGFVVLSN 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL--DTILPSVSEKDQNLPFLNQIDSPF 179
YK + YS + + +AW D I I W + D IL SEKD PFL F
Sbjct: 127 EAVFQYKCDNSYSPQSEGAIAWNDPEIGIDWIVAPEDIIL---SEKDTRHPFLKDATQLF 183
Query: 180 EYD 182
+Y+
Sbjct: 184 DYN 186
>gi|315225494|ref|ZP_07867307.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga ochracea
F0287]
gi|314944592|gb|EFS96628.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga ochracea
F0287]
Length = 182
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 104/171 (60%), Gaps = 2/171 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ + F D RG+F +++S + EL VFVQDN S S G +RGLHFQ+P
Sbjct: 7 KIEGVVIIEPQVFFDGRGYFFESFSQQRFNELVSPTVFVQDNESQS-TYGVLRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQAKLVR + G + D+AVD+R SP++G + S+ ++ N Q +IP GFAHGF L
Sbjct: 66 PFAQAKLVRVVKGEVLDVAVDLREGSPSFGQYESVILNEENKRQFFIPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
YK ++Y+ E + V W D +I I W L ++ +SEKD+ P L
Sbjct: 126 EAIFQYKCDNYYAPESEGSVRWDDPTIGIDWRLPAEVI-QLSEKDKKAPLL 175
>gi|148549129|ref|YP_001269231.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida F1]
gi|148513187|gb|ABQ80047.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida F1]
Length = 181
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 108/167 (64%), Gaps = 5/167 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + + F D RG+F ++++ K+ +E+ G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVVLFEPKVFGDQRGFFYESFNQKVFEEVVGRSVTFVQDNHSKSVK-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+AQ KLVR G +FD+AVD+R++SPT+G WV +S+ N Q++IP GFAHGF+ L
Sbjct: 65 IK-HAQGKLVRVTHGEVFDVAVDLRKSSPTFGQWVGAHLSSTNQHQLWIPEGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+++ + + +AW D ++ I WP D P++S KD
Sbjct: 124 SETAEFLYKTTDYWAPKFERSLAWNDPTVAIEWPYTDA--PTLSAKD 168
>gi|319761364|ref|YP_004125301.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Alicycliphilus denitrificans
BC]
gi|317115925|gb|ADU98413.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alicycliphilus denitrificans
BC]
Length = 181
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 109/169 (64%), Gaps = 7/169 (4%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ + F D+RG+F ++++ K E G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVVLIEPKVFGDARGFFFESFNQKAFDEATGTHFQFVQDNHSRS-GRGVLRGLHYQ 64
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
+ P Q KLVR + G ++D+AVDIRRNSPT+G WV E+S +N Q+++P GFAHGF+
Sbjct: 65 VQQP--QGKLVRVVRGAVWDVAVDIRRNSPTFGRWVGAELSEDNQRQLWVPPGFAHGFVV 122
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
L + + +YK TD+Y+ +H+ +AW D + I WP P +S KDQ
Sbjct: 123 LSESADFLYKTTDYYAPQHERCIAWNDAQLAIAWPYAGE--PVLSAKDQ 169
>gi|115279744|gb|ABI85360.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]
Length = 183
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 112/176 (63%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPTVLGDERGFFMETWNQKRFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 TE-NTQGKLVRVVSGEVFDVAVDIRKDSPTFGKWVGVYLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ + ++W D ++ITWP + P +SEKD+N L++I
Sbjct: 125 SDEAEFVYKCTDYYNPTAEISLSWDDPDLEITWPNFNQ-SPILSEKDKNPISLDKI 179
>gi|121592970|ref|YP_984866.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidovorax sp. JS42]
gi|120605050|gb|ABM40790.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidovorax sp. JS42]
Length = 182
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 116/180 (64%), Gaps = 6/180 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ + F D+RG+F ++++ + E+ G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVVLIEPKVFGDARGFFFESFNQRAFNEVTGTNHHFVQDNHSRS-TKGVLRGLHYQ 64
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
+ P Q KLVR + G +FD+AVDIR++S T+G WV +E+SA N Q+++P GFAHGF+
Sbjct: 65 IQQP--QGKLVRVVQGAVFDVAVDIRKSSATFGQWVGVELSAENHRQLWVPPGFAHGFVV 122
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
L + +YK TD+Y+ +++ +AW D ++ I WP L + P++S KD L Q + P
Sbjct: 123 LSDTADFLYKTTDYYAPQYERCIAWNDPTLAIAWPDLG-MRPTLSAKDGAGKLLQQAELP 181
>gi|284035367|ref|YP_003385297.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Spirosoma linguale DSM 74]
gi|283814660|gb|ADB36498.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Spirosoma linguale DSM 74]
Length = 181
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 104/167 (62%), Gaps = 5/167 (2%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKL 68
L R FED RG F ++Y+ L + LGL FVQDN SFS G +RGLH Q P+AQ KL
Sbjct: 14 LTPRVFEDERGHFFESYNKPLFESLGLPMDFVQDNQSFS-TKGVLRGLHMQNQPFAQGKL 72
Query: 69 VRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128
VR I+G++ DIAVD+R +SPT+G + + + A YIP GFAHGF+ LE ++ YK
Sbjct: 73 VRVISGQVLDIAVDLRPDSPTFGQYEAFLLDAKRANMAYIPEGFAHGFVALE-DSVFSYK 131
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T+ Y+ +SG+ W D ++I W + + P VSEKD+ L ++
Sbjct: 132 CTNVYNKAAESGIIWNDPDLNIDWGIAN---PIVSEKDKELKLFREV 175
>gi|66048160|ref|YP_238001.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
syringae B728a]
gi|63258867|gb|AAY39963.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
syringae B728a]
Length = 181
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 107/172 (62%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ + F D RG+F +++++K + GL FVQDNHS S G +RGLH+Q A
Sbjct: 11 VLILEPKVFGDERGFFYESFNAKAFQAATGLTREFVQDNHSRS-QQGVLRGLHYQ-IENA 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR G++ D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L + E
Sbjct: 69 QGKLVRVTVGKVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLSEHAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD+Y+ + +AW D + I W P++S KDQ L + D
Sbjct: 129 FLYKTTDYYTPSAERCIAWDDADLAIDWQFDGQ--PNLSAKDQQGKRLKEAD 178
>gi|330823239|ref|YP_004386542.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alicycliphilus denitrificans
K601]
gi|329308611|gb|AEB83026.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alicycliphilus denitrificans
K601]
Length = 181
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 109/169 (64%), Gaps = 7/169 (4%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ + F D+RG+F ++++ K E G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVVLIEPKVFGDARGFFFESFNQKAFDEATGTNFQFVQDNHSRS-GRGVLRGLHYQ 64
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
+ P Q KLVR + G ++D+AVDIRRNSPT+G WV E+S +N Q+++P GFAHGF+
Sbjct: 65 VQQP--QGKLVRVVRGAVWDVAVDIRRNSPTFGRWVGAELSEDNQRQLWVPPGFAHGFVA 122
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
L + + +YK TD+Y+ +H+ +AW D + I WP P +S KDQ
Sbjct: 123 LSESADFLYKTTDYYAPQHERCIAWNDAQLAIAWPYAGE--PVLSAKDQ 169
>gi|115350807|ref|YP_772646.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria AMMD]
gi|115280795|gb|ABI86312.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria AMMD]
Length = 183
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 112/172 (65%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ + F D+RG+F ++++++ E DV FVQDNHS S G +RGLH+Q +A
Sbjct: 13 VKIVEPKVFGDARGYFYESFNAREFAEHVAADVEFVQDNHSRSAK-GVLRGLHYQ-IRHA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVDIRR+SP +G WV + +SA N Q++IP GFAHGF+ L +
Sbjct: 71 QGKLVRVVEGEVFDVAVDIRRSSPDFGKWVGVVLSAENHRQVWIPPGFAHGFVVLSDAAQ 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD++ EH+ + W D +I I WP+ + P ++ KD L++ +
Sbjct: 131 FLYKTTDYWYPEHERCIVWNDPAIGIEWPV--DVDPLLAAKDAAGARLSEAE 180
>gi|330900904|gb|EGH32323.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
japonica str. M301072PT]
gi|330939472|gb|EGH42817.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv. pisi
str. 1704B]
gi|330980590|gb|EGH78693.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 181
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 107/172 (62%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ + F D RG+F +++++K + GL FVQDNHS S G +RGLH+Q A
Sbjct: 11 VLILEPKVFGDERGFFYESFNAKAFQAATGLTREFVQDNHSRS-QRGVLRGLHYQ-IENA 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR G++ D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L + E
Sbjct: 69 QGKLVRVTVGKVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLSEHAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD+Y+ + +AW D + I W P++S KDQ L + D
Sbjct: 129 FLYKTTDYYTPSAERCIAWDDADLAIDWQFDGQ--PNLSAKDQQGKRLKEAD 178
>gi|309789521|ref|ZP_07684104.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oscillochloris trichoides
DG6]
gi|308228487|gb|EFO82132.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oscillochloris trichoides
DG6]
Length = 176
Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 98/147 (66%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I+ ++FED+RG+F+ T+ + GL VQ N S++ GT+RG+HFQ PYA+ K
Sbjct: 13 IIDLQRFEDNRGFFACTWEANEFAAQGLSTNVVQANLSYNRTKGTLRGMHFQHAPYAEVK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
L+RC+ G I D+ +D+R +S +Y W+S+E+SA+N +YIP GFAHGF TL + EV+Y
Sbjct: 73 LIRCVRGAIVDVIIDLRPDSESYKRWISVELSADNRRALYIPEGFAHGFQTLVDDVEVMY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPL 154
+V+ FY+ GV + D + ITWPL
Sbjct: 133 QVSQFYTPSAADGVRYDDPAFGITWPL 159
>gi|313206230|ref|YP_004045407.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Riemerella anatipestifer DSM
15868]
gi|312445546|gb|ADQ81901.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Riemerella anatipestifer DSM
15868]
Length = 181
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 107/166 (64%), Gaps = 4/166 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
I++ FED RG+F + ++ K ++L G+ FVQDN S S G +RGLH Q+ +AQA
Sbjct: 13 IIEPTIFEDERGYFYEKFNEKKFEDLTGMNGHFVQDNISKS-SYGVLRGLHLQKGEHAQA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLV C+ G+++D+AVD+R +SP++G W +E++A N LQ Y+P GFAHGF L
Sbjct: 72 KLVSCLEGKVWDVAVDLREDSPSFGKWYGVELTAENKLQFYVPRGFAHGFAVLSEMAVFA 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ-NLPF 171
YK +FY+ E + G+ W D + I W L +T + +SEKD+ LPF
Sbjct: 132 YKCDNFYNKESEGGILWNDADLAIDWKLDETDVI-LSEKDKVQLPF 176
>gi|260436113|ref|ZP_05790083.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. WH 8109]
gi|260413987|gb|EEX07283.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. WH 8109]
Length = 196
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 102/162 (62%), Gaps = 4/162 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
++ + F D RGWF ++++ + E +G +F QDNHS S G +RGLH+Q P QA
Sbjct: 19 LITPQAFGDDRGWFYESWNQRKFDEAVGESVLFSQDNHSRSVQ-GVLRGLHYQLAPEPQA 77
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR G I+D+AVDIRR+SPT+G WV +E+SA+N Q++IP GFAHGF+TL EV
Sbjct: 78 KLVRATVGVIYDVAVDIRRHSPTFGTWVGVELSADNKCQLWIPEGFAHGFLTLSDVAEVQ 137
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKD 166
YK F++ + + W D + I WP+ L S+S KD
Sbjct: 138 YKARGFWNKSCERAILWNDPDLAIAWPIDQLQGAEVSLSGKD 179
>gi|86147256|ref|ZP_01065571.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Vibrio sp. MED222]
gi|85834971|gb|EAQ53114.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Vibrio sp. MED222]
Length = 181
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 111/175 (63%), Gaps = 6/175 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ F D RG+F +T+S ++L G FVQDNHS S G +RGLH+Q
Sbjct: 8 IRDVKIIEPSVFGDERGFFMETWSQDKFEKLVTGKATSFVQDNHSKS-KKGILRGLHYQ- 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR ++G +FD+AVDIR++SPT+G WV +SA N Q+++P GFAHGF
Sbjct: 66 TQNTQGKLVRVVSGEVFDVAVDIRKDSPTFGQWVGELLSAENKRQLWVPEGFAHGFYVTS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ E + + W+D++++I WP+ P++SEKD +N+I
Sbjct: 126 EEAEFVYKCTDYYNPEAEHCLFWKDETVNIKWPIESP--PTLSEKDSIGKRINEI 178
>gi|91215488|ref|ZP_01252459.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Psychroflexus torquis ATCC
700755]
gi|91186440|gb|EAS72812.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Psychroflexus torquis ATCC
700755]
Length = 182
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 107/174 (61%), Gaps = 7/174 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSK-LLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+N I++ + FED RG F +T++SK K GL VFVQDN S S GTIRGLHFQ
Sbjct: 8 LNDCFIIEPKVFEDERGSFFETFNSKDFKKNTGLNIVFVQDNQSIS-HYGTIRGLHFQEG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQAKL+R G + D+ VD+R NS TY S +S N Q+++P GFAHGF +L
Sbjct: 67 EFAQAKLIRVAKGEVLDVVVDMRPNSSTYLKQFSYLLSGENNHQLFVPRGFAHGFTSLSN 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLN 173
YK +FY+ +SG+ + DK+++I W P D I VSEKDQNLP L+
Sbjct: 127 EVVFDYKCDNFYNKASESGIVFNDKALNIDWKIPKDDQI---VSEKDQNLPSLD 177
>gi|325131124|gb|EGC53845.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
OX99.30304]
gi|325137147|gb|EGC59742.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis M0579]
gi|325201266|gb|ADY96720.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
M01-240149]
gi|325207125|gb|ADZ02577.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
NZ-05/33]
Length = 179
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 105/164 (64%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D RG+F +T+ + ++ + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPKVFGDERGFFMETFRDEWFRQNVAERTFVQENHSKSTQ-GVLRGLHYQ-TE 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR ++G +FD+AVD+RR+SPT+G WV +SA+N Q+++P GFAHGF L
Sbjct: 66 NTQGKLVRVVSGEVFDVAVDMRRDSPTFGHWVGEVLSADNKRQLWVPEGFAHGFYVLSDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y+ + + W D ++ I WPLL PS+S KD
Sbjct: 126 AEFVYKCTDYYNPNAEHSLIWNDATVGIDWPLLGE--PSLSAKD 167
>gi|157961246|ref|YP_001501280.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella pealeana ATCC
700345]
gi|157846246|gb|ABV86745.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella pealeana ATCC
700345]
Length = 189
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 110/172 (63%), Gaps = 11/172 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSK----LLKELGLQ-DVFVQDNHSFSFDCGTIRGL 56
+I V + + + F D+RG+F +T+ L E+G+ FVQ+N S S +RGL
Sbjct: 8 SIPDVLLFEPQVFGDARGFFMETFRQSEFEALFAEVGMVCPSFVQENMSRSAK-NVLRGL 66
Query: 57 HFQ--RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
H+Q +P Q KL+R AG IFD+AVD+R+ S TYG W +SA N LQ+YIP GFAH
Sbjct: 67 HYQTLQP---QGKLIRVTAGSIFDVAVDLRKGSKTYGQWFGQTLSAENRLQLYIPPGFAH 123
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
GF+TL + ++IYK TD+Y+ EH+ +AW D ++I WP+ + + P +SEKD
Sbjct: 124 GFLTLSDHADIIYKCTDYYAPEHERTIAWNDPQLNIQWPIGEGVKPILSEKD 175
>gi|308388300|gb|ADO30620.1| dTDP-D-glucose 4,6-dehydratase [Neisseria meningitidis alpha710]
Length = 180
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 105/164 (64%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D RG+F +T+ + ++ + FVQ+NHS S G +RGLH+Q
Sbjct: 9 IPDVKLLEPKVFGDERGFFMETFRDEWFRQNVAERTFVQENHSKSTQ-GVLRGLHYQ-TE 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR ++G +FD+AVD+RR+SPT+G WV +SA+N Q+++P GFAHGF L
Sbjct: 67 NTQGKLVRVVSGEVFDVAVDMRRDSPTFGHWVGEVLSADNKRQLWVPEGFAHGFYVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y+ + + W D ++ I WPLL PS+S KD
Sbjct: 127 AEFVYKCTDYYNPNAEHSLIWNDATVGIDWPLLGE--PSLSAKD 168
>gi|302186966|ref|ZP_07263639.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
syringae 642]
Length = 181
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 107/172 (62%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ + F D RG+F +++++K + GL FVQDNHS S G +RGLH+Q A
Sbjct: 11 VLILEPKVFGDERGFFYESFNAKAFQAATGLTRDFVQDNHSRS-QRGVLRGLHYQ-IENA 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR G++ D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L + E
Sbjct: 69 QGKLVRVTFGKVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLSEHAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD+Y+ + +AW D + I W PS+S KDQ L + D
Sbjct: 129 FLYKTTDYYTPSAERCIAWDDADLAIDWQFDGQ--PSLSAKDQQGKRLKEAD 178
>gi|253567134|ref|ZP_04844585.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Bacteroides sp. 3_2_5]
gi|251944258|gb|EES84767.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Bacteroides sp. 3_2_5]
Length = 192
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 109/182 (59%), Gaps = 6/182 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + IL+ R F+D RG+F ++++ + Q FVQDN S S G IRGLHFQ+P
Sbjct: 7 SIEGLVILEPRLFQDDRGYFFESFNQGEFESNVCQTTFVQDNESKS-SYGVIRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR I G + D+AVDIR+ SPT+G VS+E++ +N Q +IP GFAHGF L
Sbjct: 66 PFAQSKLVRVIKGAVLDVAVDIRKGSPTFGKHVSVELTEDNHRQFFIPRGFAHGFSVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPF 179
YK +FY E + +AW D ++I W P IL S+KD + L + F
Sbjct: 126 EVIFQYKCDNFYHPEAEGAIAWNDPDLNIDWRVPTRKVIL---SDKDTSHKCLGGVLDLF 182
Query: 180 EY 181
+Y
Sbjct: 183 DY 184
>gi|313667388|ref|YP_004047672.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria lactamica ST-640]
gi|313004850|emb|CBN86276.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria lactamica 020-06]
Length = 185
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 98/161 (60%), Gaps = 4/161 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V++LK + F+D RG+F +T+ KE FVQ+NHS S G +RGLH+Q Q
Sbjct: 11 VKLLKPQVFKDGRGFFMETFRDGWFKENIADRTFVQENHSQS-RKGVLRGLHYQTE-NTQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR IAG +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L EV
Sbjct: 69 GKLVRAIAGEVFDVAVDMREGSPTFGKWAGATLSAQNQYQLWIPEGFAHGFYVLGDTAEV 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK TD+Y E + + W D +I I WPL P +S KD
Sbjct: 129 VYKCTDYYKPEAEQVLIWNDPAIGIGWPL--QTAPLLSPKD 167
>gi|293602507|ref|ZP_06684953.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Achromobacter piechaudii ATCC
43553]
gi|292819269|gb|EFF78304.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Achromobacter piechaudii ATCC
43553]
Length = 182
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 106/165 (64%), Gaps = 4/165 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V + + R F D RG+F ++++ K +E G++ FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVLVFEPRVFGDERGFFFESFNRKAFEEATGMRRDFVQDNHSRS-SKGVLRGLHYQ-I 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR G +FD+AVDIR++SPTYG WV +SA N Q+++P GFAHGF+ +
Sbjct: 66 QQTQGKLVRVSEGAVFDVAVDIRKSSPTYGQWVGTVLSAENKRQMWVPEGFAHGFLVISE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y+ + + ++W D SI I WP L + P +SEKD
Sbjct: 126 YAEFLYKTTDYYAPQSERCISWDDPSIGIDWP-LGSDAPVMSEKD 169
>gi|253999154|ref|YP_003051217.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylovorus sp. SIP3-4]
gi|253985833|gb|ACT50690.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylovorus sp. SIP3-4]
Length = 181
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 111/170 (65%), Gaps = 8/170 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ-RPPY 63
V I + + F D+RG+F ++Y+ + L GL FVQDNHS S G +RGLH+Q R P
Sbjct: 11 VLIFEPKVFGDARGFFFESYNQNTFQALTGLSPNFVQDNHSASAK-GVLRGLHYQIRQP- 68
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
Q KLVR +AG + D+AVD+R++SP++G W S +SA N Q+++P GFAHGF+ L
Sbjct: 69 -QGKLVRVVAGEVLDVAVDMRKSSPSFGRWTSAILSAENRRQMWVPEGFAHGFVVLSEFA 127
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD-QNLPFL 172
E +YK TDFY+ EH+ + W D +++I W L T P++S KD + L FL
Sbjct: 128 EFLYKTTDFYAPEHECCIRWDDPTLNIDWQL--TAPPALSAKDSRGLDFL 175
>gi|282877916|ref|ZP_06286725.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella buccalis ATCC
35310]
gi|281299917|gb|EFA92277.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella buccalis ATCC
35310]
Length = 182
Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 113/167 (67%), Gaps = 6/167 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I++ + FED+RG+F + + + K++G D F+QDN S S G +RGLH+Q+
Sbjct: 7 KIKGVWIIEPKVFEDARGYFFEAWKQADFQKQIGQVD-FIQDNESKS-SFGVLRGLHYQK 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Y+QAKLVR I GR+ D+AVD+R++SPT+ +VS+E+S +N Q++IP GFAHGF+ L
Sbjct: 65 GEYSQAKLVRVIKGRVLDVAVDLRKSSPTFSQYVSVELSEDNKRQLFIPRGFAHGFLVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKD 166
YKV + Y+ ++G+ W D++I+I+WP+ D I+ SEKD
Sbjct: 125 DEAIFTYKVDNPYAPAQEAGIRWDDETINISWPIDKDKIV--TSEKD 169
>gi|304310335|ref|YP_003809933.1| dTDP-4-dehydrorhamnose 3,5-epimerase [gamma proteobacterium HdN1]
gi|301796068|emb|CBL44272.1| dTDP-4-dehydrorhamnose 3,5-epimerase [gamma proteobacterium HdN1]
Length = 181
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 113/174 (64%), Gaps = 5/174 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ R F DSRG+F ++Y++ +EL GL FVQDNHS S G +RGLH+Q
Sbjct: 11 VLILEPRVFGDSRGFFYESYNAARFRELTGLTVDFVQDNHSRS-GRGVLRGLHYQ-VQQP 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G ++D+AVD+RR+SP++G WV +E+S N +++IP GFAHGF+ L + +
Sbjct: 69 QGKLVRVVRGSVWDVAVDVRRSSPSFGRWVGVELSEENQKEMWIPPGFAHGFVVLSESAD 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
+YK TD+Y+ +H+ + W D+ + + W + P +SEKD+ L + + P
Sbjct: 129 FLYKTTDYYAPQHERCIVWDDRDLGVNW--MYEGDPILSEKDKAGASLKEAELP 180
>gi|152993302|ref|YP_001359023.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfurovum sp. NBC37-1]
gi|151425163|dbj|BAF72666.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfurovum sp. NBC37-1]
Length = 191
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 118/182 (64%), Gaps = 3/182 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
M I+ V +++ + +D RG+F +T+ KL LG + F QDN S S G +RGLH+Q
Sbjct: 6 MEISDVIVIEPKIHKDERGYFIETFRVDKLESFLGYKIDFCQDNESKS-SKGVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
PP+AQ KLVR + GR+ DIAVDIR+ SPT+G V++E+S N Q+ +P GFAH F+ L
Sbjct: 65 LPPFAQTKLVRVVVGRVLDIAVDIRKGSPTFGKHVAVELSGENRKQLLVPRGFAHAFVVL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
E NT YKV +YS E+D G+++ DK + I+WPL L +S +D + P L++ D F
Sbjct: 125 EDNTIFAYKVDSYYSPEYDRGISYADKELAISWPLPSEEL-KLSTRDTSQPKLHETDEIF 183
Query: 180 EY 181
EY
Sbjct: 184 EY 185
>gi|153214711|ref|ZP_01949556.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae 1587]
gi|29725987|gb|AAO88920.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]
gi|124115147|gb|EAY33967.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae 1587]
Length = 181
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 105/174 (60%), Gaps = 4/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGL--QDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T+ + +EL FVQDNHS S T+RGLH+Q
Sbjct: 7 DIPDVKIIEPTVFGDERGFFMETWQQRKFEELVTCKPTQFVQDNHSKS-KKATLRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
AQ KLVR I+G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF
Sbjct: 66 TK-NAQGKLVRVISGEVFDVAVDIRKDSPTFGKWVGVYLSAENKRQLWIPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
E +YK TD+Y+ + + W D I + WPL +SEKD P L+
Sbjct: 125 SDEAEFVYKCTDYYNPNAEGTIVWSDPDIGVEWPLDQYTDLIISEKDSAAPLLS 178
>gi|311697176|gb|ADQ00048.1| dTDP-4-dehydrorhamnose 3,5-epimerase [marine bacterium HP15]
Length = 181
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 103/167 (61%), Gaps = 4/167 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ-R 60
I V++++ + F D RG+F +T++ K +E G+ FVQDNHS S T+RGLH+Q +
Sbjct: 7 KIPAVKLIEPKVFGDERGFFMETWNEKAFREAGIDATFVQDNHSRSVK-NTLRGLHYQIK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLVR G +FD+AVD+R +S T G WV +S N +++P GFAHGF+
Sbjct: 66 QP--QGKLVRVTRGEVFDVAVDLRSDSSTCGQWVGEYLSEKNNRMLWVPPGFAHGFLVTS 123
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+ YK TDFY+ E++ + WQD + I WPL ++ P +S KDQ
Sbjct: 124 DTADFQYKCTDFYAPEYERSIYWQDLQLRICWPLQKSLKPLISRKDQ 170
>gi|253996731|ref|YP_003048795.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylotenera mobilis JLW8]
gi|253983410|gb|ACT48268.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylotenera mobilis JLW8]
Length = 186
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 111/170 (65%), Gaps = 6/170 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V IL+ + + D RG+F ++++ + ++L G++ FVQDNHS S +RGLH+Q
Sbjct: 7 TIPDVLILEPQVYGDERGFFFESFNQQKFEQLTGVKTQFVQDNHSKS-AANVLRGLHYQ- 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR +AG +FD+AVD+R++S T+G WV +S++N Q+++P GFAHGF+ L+
Sbjct: 65 ISQPQGKLVRVVAGEVFDVAVDLRKHSQTFGQWVGAILSSDNKRQMWVPEGFAHGFLVLK 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP---LLDTILPSVSEKDQ 167
NTE +YK TD+Y+ +H+ + W D I I WP L +P +S KDQ
Sbjct: 125 DNTEFLYKTTDYYAPQHERCIRWDDADIGIEWPTASLAAHAIPVLSAKDQ 174
>gi|113475072|ref|YP_721133.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Trichodesmium erythraeum
IMS101]
gi|110166120|gb|ABG50660.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Trichodesmium erythraeum
IMS101]
Length = 181
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 111/175 (63%), Gaps = 4/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +++ + F D RG+F ++++ + E G+ FVQDNHS S G +RGLH+Q
Sbjct: 8 IPEVLLIEPKVFGDERGFFMESFNQRNFSEKTGVNLEFVQDNHSRS-SQGVLRGLHYQ-I 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G IFD+AVDIR+NSP +G WV +SA N Q+++P GFAHGF +
Sbjct: 66 QQAQGKLLRVVLGEIFDVAVDIRKNSPNFGKWVGYLLSAENKRQLWVPPGFAHGFFVVSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+V+YK TD+Y+ E++ + W D I I+WP ++ I +S+KD++ L + D
Sbjct: 126 TADVLYKTTDYYAPEYERSILWNDSEIGISWP-INGIEVKLSQKDKDGTTLKEAD 179
>gi|308234493|ref|ZP_07665230.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Atopobium vaginae DSM 15829]
Length = 198
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 107/178 (60%), Gaps = 10/178 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDC-GTIRGLHFQR 60
++ + I+ T+ F D RG+F +TY + G+ FVQDNHS S C G +RGLHFQ
Sbjct: 17 KVDGLFIINTKIFGDERGFFMETYKEPDFIQAGITTKFVQDNHSKS--CRGVLRGLHFQ- 73
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+ Q+KLVR + GR+FD+AVD+R++S TYG W + +S +N Q +IP GFAHGF+ L
Sbjct: 74 IHHPQSKLVRVVKGRVFDVAVDLRKDSATYGQWEGVILSEDNHTQFFIPQGFAHGFLVLS 133
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL--DTIL-PS---VSEKDQNLPFL 172
E YK D Y + G+ W D I I WP L DT PS +SEKD+ PFL
Sbjct: 134 DEAEFCYKCDDIYHPGDEGGIMWNDPDIAIEWPALSGDTAFDPSELILSEKDKTHPFL 191
>gi|298384767|ref|ZP_06994327.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 1_1_14]
gi|298263046|gb|EFI05910.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 1_1_14]
Length = 184
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 106/167 (63%), Gaps = 6/167 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F+D RG+F +++S + E + FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IEGVFIIEPRLFKDDRGYFFESFSQREFNEKVRKVNFVQDNESKS-SYGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLVR I G + D+AVDIR+ SPT+G +VS+E++ +N Q +IP GFAHGF L
Sbjct: 67 YAQSKLVRVIKGAVLDVAVDIRKGSPTFGKYVSVELTEDNHRQFFIPRGFAHGFSVLTDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQ 167
YK +FY+ + + +AW D + I W P + +L SEKD+
Sbjct: 127 VIFQYKCDNFYAPQSEGALAWDDPDLGIDWRVPANEIVL---SEKDK 170
>gi|225686245|ref|YP_002734217.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella melitensis ATCC
23457]
gi|256043333|ref|ZP_05446268.1| dTDP-4-dehydrorhamnose 3,5-epimerase / dTDP-4-dehydrorhamnose
reductase [Brucella melitensis bv. 1 str. Rev.1]
gi|256111660|ref|ZP_05452650.1| dTDP-4-dehydrorhamnose 3,5-epimerase / dTDP-4-dehydrorhamnose
reductase [Brucella melitensis bv. 3 str. Ether]
gi|225642350|gb|ACO02263.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella melitensis ATCC
23457]
gi|326410597|gb|ADZ67661.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella melitensis M28]
gi|326553889|gb|ADZ88528.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella melitensis M5-90]
Length = 163
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 102/158 (64%), Gaps = 3/158 (1%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
+D RGWF++ Y E L+ F Q + SFS + GT+RGLH+Q P+++ KLV C+ G
Sbjct: 9 KDERGWFARVYCEAAFAERKLETHFPQHSLSFSREKGTLRGLHYQNEPHSETKLVTCLQG 68
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
++D+ VD+R +SPTY W +E+SA NG+Q+YIP G AHGF TL + + Y ++ Y+
Sbjct: 69 IVWDVLVDLRPHSPTYRRWAGVELSAENGVQLYIPEGCAHGFQTLTDDVLIRYMISKPYA 128
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+H +G+ + D ++DI WP ++ +S+KD PFL
Sbjct: 129 PDHAAGIRYDDPALDIPWPEKPSV---ISQKDLGWPFL 163
>gi|225574462|ref|ZP_03783072.1| hypothetical protein RUMHYD_02537 [Blautia hydrogenotrophica DSM
10507]
gi|225038312|gb|EEG48558.1| hypothetical protein RUMHYD_02537 [Blautia hydrogenotrophica DSM
10507]
Length = 194
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I +R+++ F D RG+F +TY+ KE G+ FVQDN S S G +RGLHFQ
Sbjct: 22 IEGLRVIEPTVFGDDRGYFMETYNYNDFKEAGIDVEFVQDNQSSS-RKGVLRGLHFQ-IN 79
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q KLVR ++G +FD+AVD+R S TYG W + +SA N Q +IP FAHGF+ L +
Sbjct: 80 YPQDKLVRVVSGEVFDVAVDLREGSATYGQWYGVVLSAENKKQFFIPKNFAHGFLVLSDH 139
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E YK TDFY + G+ W D I I WP+ + + SEKDQ
Sbjct: 140 AEFTYKCTDFYHPNDEGGLIWNDPDIGIQWPVPEGMELIFSEKDQK 185
>gi|17989175|ref|NP_541808.1| dTDP-4-dehydrorhamnose 3,5-epimerase / dTDP-4-dehydrorhamnose
reductase [Brucella melitensis bv. 1 str. 16M]
gi|260564541|ref|ZP_05835026.1| dTDP-4-dehydrorhamnose reductase [Brucella melitensis bv. 1 str.
16M]
gi|265989756|ref|ZP_06102313.1| dTDP-4-dehydrorhamnose reductase [Brucella melitensis bv. 1 str.
Rev.1]
gi|265993136|ref|ZP_06105693.1| dTDP-4-dehydrorhamnose reductase [Brucella melitensis bv. 3 str.
Ether]
gi|16740537|gb|AAL27671.1| Bme22 [Brucella melitensis]
gi|17985028|gb|AAL54072.1| dtdp-4-dehydrorhamnose 3,5-epimerase / dtdp-4-dehydrorhamnose
reductase [Brucella melitensis bv. 1 str. 16M]
gi|260152184|gb|EEW87277.1| dTDP-4-dehydrorhamnose reductase [Brucella melitensis bv. 1 str.
16M]
gi|262764006|gb|EEZ10038.1| dTDP-4-dehydrorhamnose reductase [Brucella melitensis bv. 3 str.
Ether]
gi|263000425|gb|EEZ13115.1| dTDP-4-dehydrorhamnose reductase [Brucella melitensis bv. 1 str.
Rev.1]
Length = 184
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 102/158 (64%), Gaps = 3/158 (1%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
+D RGWF++ Y E L+ F Q + SFS + GT+RGLH+Q P+++ KLV C+ G
Sbjct: 30 KDERGWFARVYCEAAFAERKLETHFPQHSLSFSREKGTLRGLHYQNEPHSETKLVTCLQG 89
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
++D+ VD+R +SPTY W +E+SA NG+Q+YIP G AHGF TL + + Y ++ Y+
Sbjct: 90 IVWDVLVDLRPHSPTYRRWAGVELSAENGVQLYIPEGCAHGFQTLTDDVLIRYMISKPYA 149
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+H +G+ + D ++DI WP ++ +S+KD PFL
Sbjct: 150 PDHAAGIRYDDPALDIPWPEKPSV---ISQKDLGWPFL 184
>gi|325261285|ref|ZP_08128023.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium sp. D5]
gi|324032739|gb|EGB94016.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium sp. D5]
Length = 202
Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/152 (47%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
IN + I++ DSRG+F +TY+ K ++E GL FVQDN S S G +RGLH+Q+
Sbjct: 12 GINGLCIIEPAVHGDSRGYFMETYNQKDMEEAGLGMNFVQDNQSSS-SKGVLRGLHYQKE 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR I G +FD+AVD+R S TYG W +E++ +N Q YIP GFAHGF+ L
Sbjct: 71 -FPQGKLVRVIKGNVFDVAVDLRSGSETYGKWFGVELTEDNKKQFYIPEGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP 153
E YK TDFY + G+AW D I + WP
Sbjct: 130 VAEFCYKCTDFYHPGDEGGLAWNDPEIGVCWP 161
>gi|60681053|ref|YP_211197.1| putative dTDP-4-dehydrorhamnose 3,5 epimerase [Bacteroides fragilis
NCTC 9343]
gi|60492487|emb|CAH07257.1| putative dTDP-4-dehydrorhamnose 3,5 epimerase [Bacteroides fragilis
NCTC 9343]
Length = 191
Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 106/167 (63%), Gaps = 6/167 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + I++ R F D RG+F ++++ + E + +FVQDN S S G IRGLHFQ+P
Sbjct: 7 DIKGLVIIEPRLFRDERGYFFESFNQNVFIEKVCKTMFVQDNESKS-SYGVIRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR + G + D+AVDIR+ SPT+G VS+E++ +N Q +IP GFAHGF L
Sbjct: 66 PFAQSKLVRVVKGSVLDVAVDIRKGSPTFGKHVSVELTEDNHRQFFIPRGFAHGFSVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKD 166
YK +FY+ + + +AW D + I W P+ + IL SEKD
Sbjct: 126 EVVFQYKCDNFYAPQCEGAIAWNDPDLGIDWKIPMEEVIL---SEKD 169
>gi|265999143|ref|ZP_05465155.2| dTDP-4-dehydrorhamnose reductase [Brucella melitensis bv. 2 str.
63/9]
gi|263092407|gb|EEZ16660.1| dTDP-4-dehydrorhamnose reductase [Brucella melitensis bv. 2 str.
63/9]
Length = 184
Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 102/158 (64%), Gaps = 3/158 (1%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
+D RGWF++ Y E L+ F Q + SFS + GT+RGLH+Q P+++ KLV C+ G
Sbjct: 30 KDERGWFARVYCEAAFAERKLETHFPQHSLSFSREKGTLRGLHYQNEPHSETKLVTCLQG 89
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
++D+ VD+R +SPTY W +E+SA NG+Q+YIP G AHGF TL + + Y ++ Y+
Sbjct: 90 IVWDVLVDLRPHSPTYRRWAGVELSAENGVQLYIPEGCAHGFQTLTDDVLIRYMISKPYA 149
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+H +G+ + D ++DI WP ++ +S+KD PFL
Sbjct: 150 PDHAAGIRYDDPALDIPWPEKPSV---ISQKDLGWPFL 184
>gi|330989098|gb|EGH87201.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 181
Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 107/172 (62%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ + F D RG+F ++++++ + GL FVQDNHS S G +RGLH+Q A
Sbjct: 11 VLILEPKVFGDERGFFYESFNARAFQAATGLTREFVQDNHSRS-QQGVLRGLHYQ-IENA 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR G++ D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L + E
Sbjct: 69 QGKLVRVTVGKVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLSEHAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD+Y+ + +AW D + I W P++S KDQ L + D
Sbjct: 129 FLYKTTDYYTPSAERCIAWNDPDLAINWQFDGQ--PNLSAKDQQGKRLKEAD 178
>gi|325970228|ref|YP_004246419.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Spirochaeta sp. Buddy]
gi|324025466|gb|ADY12225.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Spirochaeta sp. Buddy]
Length = 183
Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 103/171 (60%), Gaps = 3/171 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V I++ R F D RG+F +TY+ + G+ FVQDN S S G +RGLHFQ+
Sbjct: 10 DIEGVLIIEPRVFGDERGYFMETYNKADFYKAGITCEFVQDNQSKSRK-GVLRGLHFQKQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y QAKLVR G ++D+AVD+R+ SPTYG +V +SA Q +IP GFAHGF+ L
Sbjct: 69 -YPQAKLVRVTKGEVYDVAVDLRKESPTYGKYVGATLSAELKNQFFIPRGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
E YK +FY E + G+ W D SI I WP + I +SEKD+ L L
Sbjct: 128 EAEFTYKCDEFYHPEDEGGIRWDDPSIGIQWPEI-GIEYCLSEKDKALSTL 177
>gi|254468688|ref|ZP_05082094.1| dTDP-4-dehydrorhamnose 3,5-epimerase [beta proteobacterium KB13]
gi|207087498|gb|EDZ64781.1| dTDP-4-dehydrorhamnose 3,5-epimerase [beta proteobacterium KB13]
Length = 174
Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 110/167 (65%), Gaps = 5/167 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V++++ FED RG+F ++++ + +G + FVQDN S S G +RGLH+Q
Sbjct: 6 LKIPEVKLIEPDVFEDERGFFYESFNQHEFNNAIGQEISFVQDNQSKS-KKGVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P++Q KLVR I+G++FD+AVDIR S TYG WV+ ++ N Q++IP GFAHGF++L
Sbjct: 65 KSPFSQGKLVRVISGQVFDVAVDIREGSETYGNWVAEVLTGENKKQLWIPEGFAHGFLSL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +T YKV+++YS H+ + K ITWP LD +L S+KD
Sbjct: 125 ENDTVFSYKVSNYYSSYHEVSINPFLKEFSITWPQLDYLL---SDKD 168
>gi|156304228|ref|XP_001617513.1| hypothetical protein NEMVEDRAFT_v1g226019 [Nematostella vectensis]
gi|156194287|gb|EDO25413.1| predicted protein [Nematostella vectensis]
Length = 194
Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 104/174 (59%), Gaps = 4/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
NI V+I++ + D RG+F +T++ K +E+ G FVQDNHS S G +RGLH+Q
Sbjct: 7 NIPDVKIIEPTVYGDERGFFMETWNQKQFEEMVTGKPTSFVQDNHSKSRK-GILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR I+G +FD+AVDIR +SPT+G WV +SA N Q+++P GFAHGF
Sbjct: 66 TEN-TQGKLVRVISGEVFDVAVDIREDSPTFGKWVGEYLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ E +YK TDFY+ + + W D + I WPL P ++ KD N N
Sbjct: 125 SEDAEFVYKCTDFYNPNAEHSIVWNDPDLAINWPLDVGGQPRLANKDLNGELFN 178
>gi|328944086|ref|ZP_08241551.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Atopobium vaginae DSM 15829]
gi|327492055|gb|EGF23829.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Atopobium vaginae DSM 15829]
Length = 212
Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 107/178 (60%), Gaps = 10/178 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDC-GTIRGLHFQR 60
++ + I+ T+ F D RG+F +TY + G+ FVQDNHS S C G +RGLHFQ
Sbjct: 31 KVDGLFIINTKIFGDERGFFMETYKEPDFIQAGITTKFVQDNHSKS--CRGVLRGLHFQ- 87
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+ Q+KLVR + GR+FD+AVD+R++S TYG W + +S +N Q +IP GFAHGF+ L
Sbjct: 88 IHHPQSKLVRVVKGRVFDVAVDLRKDSATYGQWEGVILSEDNHTQFFIPQGFAHGFLVLS 147
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL--DTIL-PS---VSEKDQNLPFL 172
E YK D Y + G+ W D I I WP L DT PS +SEKD+ PFL
Sbjct: 148 DEAEFCYKCDDIYHPGDEGGIMWNDPDIAIEWPALSGDTAFDPSELILSEKDKTHPFL 205
>gi|253578777|ref|ZP_04856048.1| sugar biosynthesis protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849720|gb|EES77679.1| sugar biosynthesis protein [Ruminococcus sp. 5_1_39BFAA]
Length = 202
Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 89/140 (63%), Gaps = 2/140 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG+F +TY+ K +KE G+ FVQDN S S G +RGLHFQ+ Y Q KLVR + G
Sbjct: 26 DARGYFMETYNEKDMKEAGIDIHFVQDNQSMSTK-GVLRGLHFQKQ-YPQCKLVRAVRGT 83
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R NS TYG W + +SA N Q IP GFAHGF+ L E YKV DF+
Sbjct: 84 VFDVAVDLRSNSETYGKWYGVTLSAENKKQFLIPEGFAHGFLVLSDEAEFCYKVNDFWHP 143
Query: 136 EHDSGVAWQDKSIDITWPLL 155
+ G+AW D I I WP L
Sbjct: 144 NDEGGMAWNDPEIGIEWPEL 163
>gi|218259907|ref|ZP_03475432.1| hypothetical protein PRABACTJOHN_01093 [Parabacteroides johnsonii
DSM 18315]
gi|218224852|gb|EEC97502.1| hypothetical protein PRABACTJOHN_01093 [Parabacteroides johnsonii
DSM 18315]
Length = 185
Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 111/180 (61%), Gaps = 1/180 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ + F+D+RG+F + + +E + FVQDN S S G +RGLH+Q
Sbjct: 7 EIPGVWIIEPKVFKDARGYFMEAWKKAEFEEHIGKVEFVQDNESCS-SKGVLRGLHYQLA 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY+Q+KLVR I G + D+AVD+R+ SPT+G +V++E+S N Q +IP GFAHGF L
Sbjct: 66 PYSQSKLVRVIKGCVLDVAVDLRKGSPTFGKYVAVELSDENKRQFFIPQGFAHGFHVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YKV + Y+ H+ G+ + D + + W ++D + ++S+KD+N P L + F+Y
Sbjct: 126 EAVFTYKVDNPYTPTHERGLRFDDPVVGVDWKIMDLSILNLSDKDRNAPLLQDAEINFKY 185
>gi|294788794|ref|ZP_06754035.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Simonsiella muelleri ATCC
29453]
gi|294483276|gb|EFG30962.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Simonsiella muelleri ATCC
29453]
Length = 180
Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 104/165 (63%), Gaps = 4/165 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI V++L+ + F D RG+F +T+ +E FVQ+NHS S + +RGLH+Q
Sbjct: 7 NIPEVKLLEPKIFGDERGFFMETFRDNWFREHISDCTFVQENHSKS-NKNVLRGLHYQ-T 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R++SPT+G W +SA N Q++IP GFAHGF TLE
Sbjct: 65 AHTQGKLVRVVIGSVFDVAVDLRKSSPTFGKWFGTVLSAENKRQLWIPEGFAHGFYTLEN 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
NTE +YK TD+Y + + W D +I I W L+ P++S KD
Sbjct: 125 NTEFVYKCTDYYDPSSEHSLLWNDPTIGIEWNLIGE--PNLSAKD 167
>gi|329897709|ref|ZP_08272187.1| dTDP-4-dehydrorhamnose 3,5-epimerase [gamma proteobacterium
IMCC3088]
gi|328921056|gb|EGG28468.1| dTDP-4-dehydrorhamnose 3,5-epimerase [gamma proteobacterium
IMCC3088]
Length = 185
Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 107/171 (62%), Gaps = 6/171 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I++ R F D RG+F +TYS++ K G+ + FVQDNHS S G +RGLHFQ Y Q
Sbjct: 11 VLIIEPRVFGDDRGFFLETYSAERYKTAGIPE-FVQDNHSRS-SKGVLRGLHFQLN-YPQ 67
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR ++G +FD+AVDIR SPT+G +E+SA N Q Y+P GFAHGF+ + +
Sbjct: 68 GKLVRVVSGSVFDVAVDIRVGSPTFGKAAWVELSAENKRQFYVPPGFAHGFVVTSVTADF 127
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YK TD+Y E + + W D +++I WP+ +P +S KD + L I+
Sbjct: 128 EYKCTDYYHPEDEGALLWSDAALNIPWPI---DIPQLSAKDASAKRLADIN 175
>gi|187927734|ref|YP_001898221.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia pickettii 12J]
gi|187724624|gb|ACD25789.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia pickettii 12J]
Length = 184
Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 101/150 (67%), Gaps = 3/150 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ + + DSRG+F ++++ + + L G+ FVQDNHS S G +RG+H+Q +A
Sbjct: 13 VLILEPKVYGDSRGFFFESFNGREFETLTGVSTPFVQDNHSMS-RKGVLRGMHYQIE-HA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR I+G +FD+AVD+R++S T+G W + +SA N Q+++P GFAHGF+ L E
Sbjct: 71 QGKLVRVISGEVFDVAVDLRKSSSTFGKWAGVRLSAENKRQLWVPPGFAHGFLVLSETAE 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
+YK TD++ EH+ V W D +I I WPL
Sbjct: 131 FLYKTTDYWYPEHERSVVWNDPTIAIDWPL 160
>gi|82701401|ref|YP_410967.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosospira multiformis ATCC
25196]
gi|82409466|gb|ABB73575.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosospira multiformis ATCC
25196]
Length = 183
Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 109/170 (64%), Gaps = 7/170 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ- 59
+I V I++ + F DSRG+F ++++ + ++ GL FVQDNHS S G +RGLH+Q
Sbjct: 7 SIPEVMIIEPKVFGDSRGFFFESFNQENFRQATGLDVRFVQDNHSRSVK-GVLRGLHYQV 65
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
RP Q KLVR + G +FD+AVDIRR+SPT+G WV +E++ +N Q+++P GFAHGF
Sbjct: 66 RRP---QGKLVRVVRGAVFDVAVDIRRSSPTFGHWVGVELTEDNYRQLWLPPGFAHGFYV 122
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
L + +YK T++Y + D + W D I I WP+ + P VS KD+
Sbjct: 123 LSDIADFLYKTTEYYFSDFDRSILWNDPGIAIGWPIEAGVSPVVSSKDEK 172
>gi|88860050|ref|ZP_01134689.1| dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase [Pseudoalteromonas
tunicata D2]
gi|88818044|gb|EAR27860.1| dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase [Pseudoalteromonas
tunicata D2]
Length = 181
Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 99/164 (60%), Gaps = 2/164 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+I+ + F D RG+F +T+ K FVQ+NHS S G +RGLH+Q
Sbjct: 8 IADVKIIVPKIFGDERGYFMETFRDDWFKREVADVDFVQENHSSS-KQGILRGLHYQ-TE 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KL+R G IFD+ VD+RR S T+G W ++A N Q+++P GFAHGF + +
Sbjct: 66 HAQGKLIRVTQGEIFDVVVDLRRQSSTFGQWFGCYLNAENKHQLWVPAGFAHGFYVVSQS 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E+IYK TD+Y+ H+ + W D + I WPLL LP++S KD
Sbjct: 126 AEIIYKCTDYYAPAHEHSICWNDTDLAIDWPLLKGTLPTLSLKD 169
>gi|304314129|ref|YP_003849276.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanothermobacter
marburgensis str. Marburg]
gi|302587588|gb|ADL57963.1| predicted dTDP-4-dehydrorhamnose 3,5-epimerase [Methanothermobacter
marburgensis str. Marburg]
Length = 185
Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 104/165 (63%), Gaps = 10/165 (6%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ--RPPYAQ 65
I++ + D RG+F +T++ L ++ GL FVQDN S S G +RGLHFQ RP Q
Sbjct: 16 IIEPEVYGDERGYFMETFNQALFRDHGLDITFVQDNESMS-RRGVLRGLHFQLKRP---Q 71
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KL+R + G IFD+AVD+RR+S TYG WV + +S N + +IP GFAHGF+ L V
Sbjct: 72 GKLIRAVKGEIFDVAVDLRRDSETYGEWVGVHLSEENRREFFIPEGFAHGFLALADECIV 131
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWP--LLDTILPSVSEKDQN 168
YK T+ Y E+DSG+ W D I I WP L+D ++ +S+KD N
Sbjct: 132 NYKCTELYLPEYDSGIPWDDPDIGIEWPLELVDELI--ISDKDMN 174
>gi|293115726|ref|ZP_05792782.2| dTDP-4-dehydrorhamnose 3,5-epimerase [Butyrivibrio crossotus DSM
2876]
gi|292808617|gb|EFF67822.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Butyrivibrio crossotus DSM
2876]
Length = 195
Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I +++++ R F D RG+F ++Y+ KE G+ VFVQDN S S G +RGLHFQ+
Sbjct: 21 IEGLKVIEPRVFGDERGYFFESYNYNDFKEAGIPQVFVQDNQSAS-KRGVLRGLHFQKN- 78
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR I G +FD+AVD+R+ S TYG W + +S +N Q +IP FAHGF+ L
Sbjct: 79 FPQDKLVRVIRGEVFDVAVDLRKGSKTYGKWFGVVLSEDNKKQFFIPKNFAHGFLVLSDY 138
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E YK TDFY + + G+ + D I + WP + + +S+KDQ
Sbjct: 139 AEFAYKCTDFYHPDDEGGLLYNDPDIGVEWPFEEGVELILSDKDQK 184
>gi|257462294|ref|ZP_05626710.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. D12]
gi|317059963|ref|ZP_07924448.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. D12]
gi|313685639|gb|EFS22474.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. D12]
Length = 191
Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 104/163 (63%), Gaps = 7/163 (4%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
+ DSRG+FS+ Y K ++G FVQDN+S S G +RGLHFQ+ + Q KL+R +
Sbjct: 22 YPDSRGFFSEMYHKKEFVKMGFTKEFVQDNYSCS-KRGVLRGLHFQKK-HPQEKLLRVLK 79
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
GRI D+ +D+R S ++G + S+E+SA N +YIP G AHGF++LE +T+V YK TDFY
Sbjct: 80 GRILDVVLDLRMGSESFGKYFSVELSAENQKMLYIPAGMAHGFLSLEEDTQVFYKCTDFY 139
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPS----VSEKD-QNLPF 171
E ++G+ W D+ + I W L L +SEKD QN+ F
Sbjct: 140 HPEEEAGILWNDRELAIDWKLEAYHLSEENLCLSEKDKQNMTF 182
>gi|51246075|ref|YP_065959.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Desulfotalea
psychrophila LSv54]
gi|50877112|emb|CAG36952.1| probable dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Desulfotalea
psychrophila LSv54]
Length = 184
Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 103/165 (62%), Gaps = 5/165 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ R F D+RG+F +T+ K EL FVQ+NHS S G +RGLH+Q Q K
Sbjct: 13 IIEPRVFADARGFFMETWQQKKFDELIGPQTFVQENHSKS-SAGILRGLHYQEK-NTQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR + G +FD+AVDIR++S T+G WV + +SA N Q +IP GFAHGF + + +Y
Sbjct: 71 LVRIVIGEVFDVAVDIRKDSNTFGQWVGVLLSAENKRQFWIPKGFAHGFYVISQEADFVY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN-LPF 171
K TD+Y+ + + + W D + I WPL P +SEKDQ+ +PF
Sbjct: 131 KCTDYYNPQAERTILWNDPDLAIDWPL--KTPPQLSEKDQSGMPF 173
>gi|71733249|ref|YP_272458.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257483684|ref|ZP_05637725.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|289626550|ref|ZP_06459504.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289649196|ref|ZP_06480539.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
aesculi str. 2250]
gi|71553802|gb|AAZ33013.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320326581|gb|EFW82631.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
glycinea str. B076]
gi|320331097|gb|EFW87069.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330869503|gb|EGH04212.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330871968|gb|EGH06117.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330892261|gb|EGH24922.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv. mori
str. 301020]
gi|331012162|gb|EGH92218.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 181
Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 107/172 (62%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ + F D RG+F ++++++ + GL FVQDNHS S G +RGLH+Q A
Sbjct: 11 VLILEPKVFGDERGFFYESFNARAFQAATGLTREFVQDNHSRS-QQGVLRGLHYQ-IENA 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR G++ D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L + E
Sbjct: 69 QGKLVRVTVGKVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLSEHAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD+Y+ + +AW D + I W P++S KDQ L + D
Sbjct: 129 FLYKTTDYYTPSAERCIAWNDPDLAIDWQFDGQ--PNLSAKDQQGKRLKEAD 178
>gi|322433405|ref|YP_004210622.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidobacterium sp. MP5ACTX9]
gi|321165794|gb|ADW71495.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidobacterium sp. MP5ACTX9]
Length = 200
Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 106/176 (60%), Gaps = 2/176 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V++L+ +++ D RGWFS+ ++ K LGL + FVQ+N S+S G +RGLH+Q Q
Sbjct: 24 VKLLRPKQYPDERGWFSEVFTGKGFSALGLPEHFVQENQSYS-SRGVLRGLHYQLGK-QQ 81
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR ++G I+D+AVD+R SP +G W E++ + ++IP GF HGF+ + V
Sbjct: 82 GKLVRVLSGTIWDVAVDLRPGSPDFGQWAGFELTGDELELLWIPEGFGHGFLVTSESANV 141
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+YK T +Y + + W D S+ I WPL +P++S KD +++Q + P Y
Sbjct: 142 LYKTTGYYYPAGERCIRWDDPSLKIDWPLEGLGVPNISAKDATGSYMSQAELPPAY 197
>gi|91782044|ref|YP_557250.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia xenovorans
LB400]
gi|91685998|gb|ABE29198.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia xenovorans
LB400]
Length = 183
Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 108/167 (64%), Gaps = 7/167 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ- 59
I V IL+ + F D RG+F ++++++ +EL G++ FVQDNHS S +RGLH+Q
Sbjct: 9 EIPDVLILEPKVFGDDRGFFYESFNARRFEELTGVKREFVQDNHSRS-ARNVLRGLHYQI 67
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P Q KLVR + G +FD+AVD+R+ SPT+G WV + +SA N Q+++P GFAHGF+
Sbjct: 68 QNP--QGKLVRVVTGEVFDVAVDLRKQSPTFGRWVGVTLSAENKRQLWVPEGFAHGFVVT 125
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD++ EH+ + W D I I WP++ P++S KD
Sbjct: 126 SEYAEFLYKTTDYWYAEHERSIVWNDPQIGIQWPIVGQ--PALSGKD 170
>gi|288926984|ref|ZP_06420879.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella buccae D17]
gi|315608741|ref|ZP_07883719.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella buccae ATCC 33574]
gi|288336230|gb|EFC74616.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella buccae D17]
gi|315249591|gb|EFU29602.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella buccae ATCC 33574]
Length = 182
Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I+ + FED RG+F + + +E + F+QDN S S G +RGLH+Q
Sbjct: 7 EIKGVWIMTPKVFEDRRGYFFEAWKKAEFEEHVGKVDFIQDNESKS-SFGVLRGLHYQTG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
YAQAKLVR I GR+ D+AVD+R++SPT+G V++E+S N Q +IP GFAHGF+ L
Sbjct: 66 DYAQAKLVRVIKGRVLDVAVDLRKSSPTFGRHVAVELSEENKRQFFIPRGFAHGFLVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
YKV + Y+ +H++G+ W D+ + I WP +D S+KD P L
Sbjct: 126 EAVFTYKVDNAYAPQHEAGIRWDDEQVAIKWP-IDPGDVVTSDKDLKAPALK 176
>gi|153010710|ref|YP_001371924.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ochrobactrum anthropi ATCC
49188]
gi|151562598|gb|ABS16095.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ochrobactrum anthropi ATCC
49188]
Length = 174
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 107/172 (62%), Gaps = 3/172 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NI+ ++ + ED RGWF++ Y E ++ F Q + SFS + GT+RGLH+Q
Sbjct: 6 LNIDGAWSIEPERLEDERGWFARVYCEAAFAERQMETHFPQHSLSFSREEGTLRGLHYQN 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+++ KLV C+ G I+D+ VD+R +SPTY W +E+SA NG+Q+YIP G AHGF TL
Sbjct: 66 EPHSETKLVTCLQGVIWDVLVDLRPHSPTYRRWAGVELSAENGVQLYIPEGCAHGFQTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ V Y ++ Y+ ++ +G+ + D S+ I WP ++ +S+KD P L
Sbjct: 126 SDVLVRYMISKPYAPDYATGLRYDDPSLGIPWPNRPSV---ISDKDLAWPLL 174
>gi|224369618|ref|YP_002603782.1| RfbC1 [Desulfobacterium autotrophicum HRM2]
gi|223692335|gb|ACN15618.1| RfbC1 [Desulfobacterium autotrophicum HRM2]
Length = 182
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V ++ + F D RG+F +T+ KE FVQDNHS S +RGLH+Q
Sbjct: 6 LSIPEVVLITPQVFGDHRGFFMETFRDDEFKENVAHATFVQDNHSKS-TQNILRGLHYQI 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+ Q KLVR I+G +FD+AVDIR++SP +G W +SA N ++IP GFAHGF L
Sbjct: 65 K-HPQGKLVRVISGEVFDVAVDIRKSSPFFGRWSGATLSAENKNMLWIPPGFAHGFYVLS 123
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E YK TD+Y+ EH+ + W D SI I WP++ +P +S+KD+
Sbjct: 124 NEAEFTYKCTDYYAPEHERSIRWDDPSIAIDWPIIHGTVPILSQKDK 170
>gi|221201086|ref|ZP_03574126.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans
CGD2M]
gi|221206462|ref|ZP_03579475.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans
CGD2]
gi|221173771|gb|EEE06205.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans
CGD2]
gi|221178936|gb|EEE11343.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans
CGD2M]
Length = 183
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 101/150 (67%), Gaps = 3/150 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ + F D+RG+F ++++ + E V FVQDNHS S G +RGLH+Q +A
Sbjct: 13 VKIIEPKVFGDARGYFYESFNGREFAEQVEPGVEFVQDNHSRSAK-GVLRGLHYQIQ-HA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVDIRR+SP +G WV + +SA+N Q+++P GFAHGF+ L +
Sbjct: 71 QGKLVRVVEGEVFDVAVDIRRSSPNFGKWVGVTLSADNHRQLWVPPGFAHGFVVLSEAAQ 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
+YK TD++ EH+ +AW D I I WP+
Sbjct: 131 FLYKTTDYWYPEHERSIAWNDPDIGIEWPI 160
>gi|118580534|ref|YP_901784.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pelobacter propionicus DSM
2379]
gi|118503244|gb|ABK99726.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pelobacter propionicus DSM
2379]
Length = 181
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 109/172 (63%), Gaps = 9/172 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ- 59
+I V I++ + F D RG+F ++++ ++ +EL GL FVQ NHS S G +RGLH+Q
Sbjct: 7 SIPDVLIVEPKVFGDERGFFFESFNQRIWRELTGLDGCFVQHNHSRS-TAGVLRGLHYQI 65
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
P Q KLVR ++G +FD+AVDIRR+S T+G W +SA+N Q+++P GFAHGF
Sbjct: 66 HNP---QGKLVRVVSGEVFDVAVDIRRSSATFGRWFGAALSADNKRQLWVPPGFAHGFYV 122
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
E +Y TDF++ EH+ +AW D + I WPL PS+S+KD+ P
Sbjct: 123 TSPVAEFLYLTTDFWAPEHERCIAWNDPDLAIQWPLAGE--PSLSDKDRAAP 172
>gi|313683244|ref|YP_004060982.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Sulfuricurvum kujiense DSM
16994]
gi|313156104|gb|ADR34782.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfuricurvum kujiense DSM
16994]
Length = 197
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/176 (44%), Positives = 106/176 (60%), Gaps = 3/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V ++ + D RG+F +T+ + KL LG F QDN S S G +RGLH+Q
Sbjct: 7 EIPDVIVIDPKVHGDERGYFVETFRADKLEAFLGFTIPFCQDNESKS-SYGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ+KLVR I G + D+AVDIR+ SPT+G VS+ +S N Q++IP GFAHGF+ L
Sbjct: 66 PPHAQSKLVRVIDGEVLDVAVDIRKGSPTFGRHVSVRLSGENKRQLFIPRGFAHGFVVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YKV ++YS E D G+A+ D SI I W + + L +S KD P LN D
Sbjct: 126 ETCTFAYKVDNYYSPECDRGIAFDDPSIGIDWHVNHSDL-QLSPKDTEQPLLNAAD 180
>gi|309378566|emb|CBX22838.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 185
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 97/161 (60%), Gaps = 4/161 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+ILK + F D RG+F +T+ KE FVQ+NHS S G +RGLH+Q Q
Sbjct: 11 VKILKPQVFTDGRGFFMETFRDGWFKENIADRTFVQENHSQS-RKGVLRGLHYQTE-NTQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L EV
Sbjct: 69 GKLVRVVVGEVFDVAVDMREGSPTFGKWTGATLSAQNQYQLWIPEGFAHGFYVLSDTAEV 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK TD+Y E + + W D +I I WPL T P +S KD
Sbjct: 129 VYKCTDYYKPEAEQVLIWNDPAIGIGWPLQTT--PLLSPKD 167
>gi|301632557|ref|XP_002945349.1| PREDICTED: dTDP-4-dehydrorhamnose 3,5-epimerase-like [Xenopus
(Silurana) tropicalis]
Length = 181
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 110/169 (65%), Gaps = 9/169 (5%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +L+ + F D+RG+F ++++ K ++ G VFVQDNHS S G +RGLH+Q
Sbjct: 6 LTIPDVVLLEPKVFGDARGFFFESFNQKAFQQATGSDGVFVQDNHSRS-SRGVLRGLHYQ 64
Query: 60 --RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
+P Q KLVR G ++D+AVD+R+++PT+G WV E+S N Q+++P GFAHGF+
Sbjct: 65 IAQP---QGKLVRVARGSVWDVAVDLRKSAPTFGQWVGAELSEENQRQLWVPPGFAHGFV 121
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
L + + +YK TD+Y+ +H+ +AW D + I WP T PS+S KD
Sbjct: 122 VLSDSADFLYKTTDYYAPQHERCIAWNDAQLAIQWPYAGT--PSLSAKD 168
>gi|282881317|ref|ZP_06289997.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella timonensis CRIS
5C-B1]
gi|281304793|gb|EFA96873.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella timonensis CRIS
5C-B1]
Length = 184
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 106/166 (63%), Gaps = 2/166 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ + F D+RG+F + + + F+QDN S S G +RGLH+Q+
Sbjct: 8 IQGVWIIEPKVFNDARGYFFEAWKQAEFNAHIGEVNFIQDNESQS-SYGVLRGLHYQKGA 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+QAKLVR I G + D+AVD+R++SPT+G V++E+SA+N Q++IP GFAHGF+ L
Sbjct: 67 YSQAKLVRVIQGSVLDVAVDLRKSSPTFGKHVAVELSADNKRQLFIPRGFAHGFLVLSQE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YKV + Y+ +H++G+ W D+ ++I WP LD SEKD N
Sbjct: 127 AIFTYKVDNVYAPQHEAGIRWNDEDLNIQWP-LDPACFITSEKDLN 171
>gi|153826358|ref|ZP_01979025.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae MZO-2]
gi|149739927|gb|EDM54114.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae MZO-2]
Length = 181
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 107/167 (64%), Gaps = 4/167 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPTVFGDERGFFMETWNQKRFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 TE-NTQGKLVRVVSGEVFDVAVDIRKDSPTFGKWVGVYLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y+ + + + W D SI+I WP + +L S +K+
Sbjct: 125 SDEAEFVYKCTDYYNPKAEHSLLWNDPSINIEWPRSEGLLLSDKDKE 171
>gi|150008449|ref|YP_001303192.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Parabacteroides distasonis
ATCC 8503]
gi|255014199|ref|ZP_05286325.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_7]
gi|256841550|ref|ZP_05547057.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Parabacteroides sp. D13]
gi|301309339|ref|ZP_07215281.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 20_3]
gi|149936873|gb|ABR43570.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Parabacteroides distasonis
ATCC 8503]
gi|256737393|gb|EEU50720.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Parabacteroides sp. D13]
gi|300832428|gb|EFK63056.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 20_3]
Length = 185
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 108/179 (60%), Gaps = 1/179 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ + +D+RG+F + + +E + FVQDN S S G +RGLH+Q P
Sbjct: 8 IPGVWIIEPKVLKDARGYFMEAFKQAEFEEHIGKIQFVQDNESCS-SKGVLRGLHYQLAP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+Q+KLVR I GR+ D+AVD+R SPT+G +V++E+S N Q++IP GFAHGF L
Sbjct: 67 YSQSKLVRVIKGRVLDVAVDVREGSPTFGKYVAVELSDENKRQLFIPQGFAHGFHVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YKV + Y+ H+ G+ + D ++ + W + D ++SEKD P L + F+Y
Sbjct: 127 AIFTYKVDNPYTPTHERGIRYDDPTVHVDWSITDPESINLSEKDTKAPLLKDAELNFKY 185
>gi|330966030|gb|EGH66290.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 181
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 106/172 (61%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ + F D RG+F ++++++ ++ GL FVQDNHS S G +RGLH+Q A
Sbjct: 11 VLILEPKVFGDERGFFYESFNARAFQQATGLTRQFVQDNHSRS-QRGVLRGLHYQ-IENA 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR G + D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L + E
Sbjct: 69 QGKLVRVTVGTVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLSEHAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD+Y+ + +AW D + I W PS+S KDQ L D
Sbjct: 129 FLYKTTDYYTPSAERCIAWNDPDLAIDWQFDGE--PSLSAKDQQGKSLKDAD 178
>gi|296136994|ref|YP_003644236.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thiomonas intermedia K12]
gi|295797116|gb|ADG31906.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thiomonas intermedia K12]
Length = 187
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 108/178 (60%), Gaps = 11/178 (6%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQ--RPP 62
V IL+ + F D RG+F ++Y+ K + GL FVQDNHS S G +RGLH+Q +P
Sbjct: 11 VLILEPKVFGDERGFFFESYNRKTFALDTGLDVEFVQDNHSKSAQ-GVLRGLHYQLVKP- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G ++D+AVD+RR+SP + WV +E+SA N +++P GF HGF+ L
Sbjct: 69 --QGKLVRAVTGTVWDVAVDLRRSSPRFKQWVGVELSAQNQRLLWVPPGFGHGFVVLSET 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL----PSVSEKDQNLPFLNQID 176
+ +YK TD++ EHD +AW D + I WPL L PS++ KD P L Q +
Sbjct: 127 ADFLYKTTDYWYPEHDRNLAWNDPELAIAWPLKGLHLPGGQPSLAAKDAAAPRLAQAE 184
>gi|153854428|ref|ZP_01995706.1| hypothetical protein DORLON_01701 [Dorea longicatena DSM 13814]
gi|149752954|gb|EDM62885.1| hypothetical protein DORLON_01701 [Dorea longicatena DSM 13814]
Length = 202
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 98/168 (58%), Gaps = 18/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG+F +TY+ K ++E GL FVQDN S S G +RGLHFQ+ + Q KLVR + G
Sbjct: 26 DARGYFMETYNQKDMEEAGLTMQFVQDNQSCSTK-GVLRGLHFQKE-FPQGKLVRVVKGS 83
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R +S TYG W +E++ N Q YIP GFAHGF+ L E YK TDFY
Sbjct: 84 VFDVAVDLRSDSETYGKWFGVELTEENKKQFYIPEGFAHGFLVLSDIAEFCYKCTDFYHP 143
Query: 136 EHDSGVAWQDKSIDITWPLL----------------DTILPSVSEKDQ 167
+ G+AW D I I WP L D ++SEKDQ
Sbjct: 144 GDEGGLAWNDPEIGIEWPTLTGEYKGTASGEGYALEDGTALNLSEKDQ 191
>gi|257093452|ref|YP_003167093.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257045976|gb|ACV35164.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 180
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 105/163 (64%), Gaps = 6/163 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ-RPPYA 64
V I++ + F D+RG+F +T++ + +LGL FVQDNHS S G +RGLH+Q P
Sbjct: 11 VWIVEPKVFGDARGFFMETWNRRTFADLGLDVEFVQDNHSRSRQ-GVLRGLHYQIHEP-- 67
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR +G +FD+AVD+RR+SP +G W + +S N +++P GFAHGF+ + +
Sbjct: 68 QGKLVRVTSGEVFDVAVDLRRSSPHFGRWAGVTLSGENQRMLWVPPGFAHGFLVVSPAAD 127
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+YK T +Y+ EH+ VAW D I I WPL D P++S KD+
Sbjct: 128 FLYKTTAYYAPEHERCVAWNDPDIGIRWPLDDE--PALSAKDR 168
>gi|167563827|ref|ZP_02356743.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia oklahomensis
EO147]
Length = 183
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 109/172 (63%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ + F D+RG+F ++++++ EL V FVQDNHS S G +RGLH+Q +A
Sbjct: 13 VKIIEPKAFGDARGFFFESFNAREFAELVEPGVEFVQDNHSRS-ARGVLRGLHYQ-IQHA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVD+R++SP +G WV + +SA N Q+++P GFAHGF+ L +
Sbjct: 71 QGKLVRVVEGEVFDVAVDVRKSSPNFGKWVGVNLSAENKRQLWVPAGFAHGFVVLSETAD 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD++ E + + W DK I I WP+ P V+ KD L + +
Sbjct: 131 FLYKTTDYWYPEFERSILWSDKQIGIDWPMDRE--PLVAAKDAAGKLLGEAE 180
>gi|78188492|ref|YP_378830.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Chlorobium
chlorochromatii CaD3]
gi|78170691|gb|ABB27787.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium chlorochromatii
CaD3]
Length = 197
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 110/184 (59%), Gaps = 7/184 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +L+ + F D RG+F +++ +++E Q FVQDN S S G +RGLHFQ+P
Sbjct: 7 TIPEVLMLEPKVFGDERGYFFESFRQDVIEEHIGQVHFVQDNESKS-SYGVLRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY Q+KLVR + G++ D+AVD+R SPT+G ++ + + +++P GFAHGF+ L
Sbjct: 66 PYTQSKLVRALFGKVLDVAVDVRHGSPTFGQHITCLLDSERKNMLWVPKGFAHGFVVLSP 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPF 179
YK ++Y+ HD+G+AW D ++ I W PL D L S KD P L+ +D F
Sbjct: 126 EAVFAYKCDNYYTPSHDAGIAWNDPALGIDWQLPLADVRL---SSKDAAQPSLSSVDC-F 181
Query: 180 EYDG 183
YD
Sbjct: 182 PYDA 185
>gi|315178427|gb|ADT85341.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Vibrio furnissii NCTC
11218]
Length = 183
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 108/166 (65%), Gaps = 4/166 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+N V +++ F D RG+F ++++ SK +G+ +FVQDNHS S G +RGLH+Q
Sbjct: 9 LNDVFVIEMPVFGDERGFFMESFNQSKFNDAIGIPTIFVQDNHSKS-SQGVLRGLHYQVS 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR +AGR+FD+ +D+R++S T+G W E+S +N Q++IP GFAHGF++L
Sbjct: 68 S-TQGKLVRVMAGRVFDVVLDLRKSSTTFGKWQGFELSGDNKKQLWIPEGFAHGFLSLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
N E +YK TD+Y+ + + W D + I WP ++ + +SEKDQ
Sbjct: 127 NVEFVYKTTDYYNPNAERTIMWNDSELGIDWP-IEGLELVISEKDQ 171
>gi|29725992|gb|AAO88924.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]
gi|115279712|gb|ABI85328.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]
Length = 181
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 107/167 (64%), Gaps = 4/167 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPTVFGDERGFFMETWNQKRFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 TE-NTQGKLVRVVSGEVFDVAVDIRKDSPTFGKWVGVYLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y+ + + + W D SI+I WP + +L S +K+
Sbjct: 125 SDEAEFVYKCTDYYNPKAEHSLLWNDPSINIEWPSSEGLLLSDKDKE 171
>gi|291615365|ref|YP_003525522.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sideroxydans lithotrophicus
ES-1]
gi|291585477|gb|ADE13135.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sideroxydans lithotrophicus
ES-1]
Length = 182
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 108/172 (62%), Gaps = 6/172 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ-RPPYAQ 65
I++ + F D RG+F ++++ + EL G+ D FVQDNHS S +RGLH+Q R P Q
Sbjct: 13 IVEPKVFGDDRGFFYESFNQRRFTELTGVTDPFVQDNHSKSAR-NVLRGLHYQIRQP--Q 69
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR IAG + DIAVDIRR+S T+G WV + +SA N +++P GFAHGF+ L + E
Sbjct: 70 GKLVRVIAGEVLDIAVDIRRSSATFGQWVGVNLSAENKKMLWVPKGFAHGFVVLSESAEF 129
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+YK TD+++ EH+ +AW D + I W L P +S KDQ L ++
Sbjct: 130 LYKTTDYWAPEHERCIAWNDPDLAIDWQLAGAT-PLLSAKDQAGKLLRDAET 180
>gi|229512766|ref|ZP_04402234.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae TMA 21]
gi|29726007|gb|AAO88936.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]
gi|229350276|gb|EEO15228.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae TMA 21]
Length = 183
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 105/168 (62%), Gaps = 5/168 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPTVFGDERGFFMETWNQKRFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 TE-NTQGKLVRVVSGEVFDVAVDIRKDSPTFGKWVGVYLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E +YK TD+Y+ + + W D I I WPL T P +S KDQ
Sbjct: 125 SDEAEFVYKCTDYYNPTAEHSLLWNDPDIAIVWPLSGT-EPQLSVKDQ 171
>gi|260174674|ref|ZP_05761086.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D2]
gi|315922937|ref|ZP_07919177.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D2]
gi|313696812|gb|EFS33647.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D2]
Length = 189
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 112/181 (61%), Gaps = 4/181 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F+D RG+F +++S + E + FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IEGVVIIEPRLFKDDRGYFFESFSQREFTEKVRKVDFVQDNESKS-SYGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLVR I G + D+AVDIR+ SPT+G VS+E++ N Q +I GFAHGF+ L
Sbjct: 67 YAQSKLVRVIKGSVLDVAVDIRKGSPTFGEHVSVELTEENHRQFFISRGFAHGFVVLTEE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +FY+ + + +AW D ++ I W + D ++ SV KDQ+ L + F+Y
Sbjct: 127 VIFQYKCDNFYAPQCEGALAWDDPALKIDWKVPADKVILSV--KDQHHERLEEAGWLFDY 184
Query: 182 D 182
+
Sbjct: 185 N 185
>gi|119775372|ref|YP_928112.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella amazonensis SB2B]
gi|119767872|gb|ABM00443.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella amazonensis SB2B]
Length = 176
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 101/171 (59%), Gaps = 4/171 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
IN V+++ FED RG+F +++ + EL FVQDN S S GT+RGLH+Q
Sbjct: 8 INEVKLIIPSVFEDERGYFFESWQQQRFAELVAPVTFVQDNQSLS-KRGTLRGLHWQEA- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KL+ ++G IFD+AVDIR SPTYG WV +SA N Q++IP GFAHGF L +
Sbjct: 66 HPQDKLISVLSGTIFDVAVDIRPESPTYGKWVGETLSAENHRQLFIPKGFAHGFYVLSES 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
V YK +DFY E + + W D S+ I WP+ LP +S KD P
Sbjct: 126 AIVSYKCSDFYHPEDERSIRWDDPSLAIQWPIEG--LPLLSAKDAMAPLFT 174
>gi|163803299|ref|ZP_02197178.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio sp. AND4]
gi|159172936|gb|EDP57774.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio sp. AND4]
Length = 182
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 108/172 (62%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQRPPY 63
V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 11 VKIIEPTVFGDERGFFMETWNQKQFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQTE-N 68
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
Q KLVR ++G +FD+AVDIR+ SPT+G WV +S N Q+++P GFAHGF
Sbjct: 69 TQGKLVRVVSGEVFDVAVDIRKGSPTFGQWVGEYLSGENKRQLWVPEGFAHGFYVTSDEA 128
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ + + W D++++I WP+ +T P +S KD+ F +++
Sbjct: 129 EFVYKCTDYYNPSAEVSIQWDDEALNIDWPIAETT-PLLSGKDKGGIFFSKV 179
>gi|189347269|ref|YP_001943798.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium limicola DSM 245]
gi|189341416|gb|ACD90819.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium limicola DSM 245]
Length = 192
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 112/180 (62%), Gaps = 3/180 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ + F D RG+F +TY +++ + FVQDN S S G +RGLH+Q+PP
Sbjct: 8 IPDVLIIEPKVFGDERGYFLETYRQDVIESRIGKVGFVQDNESKS-SYGVLRGLHYQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q+KLVR ++G + DIAVD+R+ SP +G +V +E+SA ++IP GFAHGF+ L
Sbjct: 67 FTQSKLVRAVSGSVLDIAVDLRKGSPWFGKYVGVELSAERKNMLWIPKGFAHGFVVLSTE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK ++Y+ +HD+GV W D+ + I W + ++ + VS+KD ++D F YD
Sbjct: 127 AVFAYKCDNYYAPDHDAGVLWNDRELAIDWQIPESDI-RVSDKDAKQQLFAEVDC-FIYD 184
>gi|148643368|ref|YP_001273881.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanobrevibacter smithii
ATCC 35061]
gi|148552385|gb|ABQ87513.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanobrevibacter smithii
ATCC 35061]
Length = 185
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 102/173 (58%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + +++ + D+RG+F +TY+ K+ G FVQDN S SF G +RGLH Q
Sbjct: 10 DIEGMFVVEPAVYGDNRGYFMETYNENDFKKAGYDLTFVQDNQSQSFK-GVLRGLHLQLK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR I G +FD+ VD+R +SPTYG W +SA N Q+YIP FAHGF+ L
Sbjct: 69 -YPQGKLVRVIKGEVFDVGVDLRADSPTYGKWHGEILSAENKKQLYIPPKFAHGFVVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T+FY E + G+ W D I + WPL ++S+KD+ L +
Sbjct: 128 EAEFVYKCTEFYHGEDEGGIMWNDPDIAVEWPLEGIDEITLSDKDKKWKSLKE 180
>gi|222445611|ref|ZP_03608126.1| hypothetical protein METSMIALI_01251 [Methanobrevibacter smithii
DSM 2375]
gi|222435176|gb|EEE42341.1| hypothetical protein METSMIALI_01251 [Methanobrevibacter smithii
DSM 2375]
Length = 188
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 102/173 (58%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + +++ + D+RG+F +TY+ K+ G FVQDN S SF G +RGLH Q
Sbjct: 13 DIEGMFVVEPAVYGDNRGYFMETYNENDFKKAGYDLTFVQDNQSQSFK-GVLRGLHLQLK 71
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR I G +FD+ VD+R +SPTYG W +SA N Q+YIP FAHGF+ L
Sbjct: 72 -YPQGKLVRVIKGEVFDVGVDLRADSPTYGKWHGEILSAENKKQLYIPPKFAHGFVVLSD 130
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T+FY E + G+ W D I + WPL ++S+KD+ L +
Sbjct: 131 EAEFVYKCTEFYHGEDEGGIMWNDPDIAVEWPLEGIDEITLSDKDKKWKSLKE 183
>gi|127512335|ref|YP_001093532.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella loihica PV-4]
gi|126637630|gb|ABO23273.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella loihica PV-4]
Length = 181
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 104/175 (59%), Gaps = 6/175 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
I V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 KIPDVKIIEPTVFGDERGFFMETWNQKRFEELVTGKHTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR I G +FD+AVDIR+ SPT+G WV +SA N Q+++P GFAHGF
Sbjct: 66 TEN-TQGKLVRVIYGEVFDVAVDIRKGSPTFGKWVGEYLSAENNRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ E +YK TD+Y+ + + W DK + I WP P +S KD N +N+
Sbjct: 125 SEHAEFVYKCTDYYNPHMECSIQWDDKFLSIEWPFESE--PILSSKDSNCLGMNE 177
>gi|313159056|gb|EFR58431.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alistipes sp. HGB5]
Length = 191
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 107/182 (58%), Gaps = 6/182 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V IL+ F D+RG+F ++YS + FVQDN S S G +RGLHFQ+
Sbjct: 8 IEGVVILEPEVFGDARGYFFESYSQRRFDAEVRPVRFVQDNESHS-RYGVLRGLHFQKGR 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+Q+KLVR + GR+ D+AVDIRR SPT+G V++E++ +N Q +IP GFAHGF L
Sbjct: 67 YSQSKLVRVVRGRVLDVAVDIRRGSPTFGRHVAVELTEDNKRQFFIPRGFAHGFAVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL--DTILPSVSEKDQNLPFLNQIDSPFE 180
YK + YS E + +AW D S+ I W L D IL S KD P L++ F+
Sbjct: 127 ATFQYKCDNPYSPESEGAIAWNDPSLGIDWRLAPEDVIL---SPKDSAHPLLSEAGELFD 183
Query: 181 YD 182
Y+
Sbjct: 184 YN 185
>gi|170698773|ref|ZP_02889837.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria
IOP40-10]
gi|170136330|gb|EDT04594.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria
IOP40-10]
Length = 183
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 110/172 (63%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V++++ + F D+RG+F ++++ + E +G FVQDNHS S G +RGLH+Q +A
Sbjct: 13 VKLIEPKVFGDARGYFYESFNGREFAEHIGPGIEFVQDNHSRSAK-GVLRGLHYQVQ-HA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVDIRR SPT+G WV + +SA+N Q+++P GFAHGF+ L +
Sbjct: 71 QGKLVRVVEGEVFDVAVDIRRRSPTFGKWVGVILSADNHRQLWVPPGFAHGFVVLSEAAQ 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD++ EH+ + W D I I WP+ P ++ KD L++ +
Sbjct: 131 FLYKTTDYWYPEHERCIVWDDPEIGIEWPI--DAAPVLAPKDAAGKRLSEAE 180
>gi|294341170|emb|CAZ89571.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase) (dTDP-L-rhamnose synthetase) [Thiomonas
sp. 3As]
Length = 187
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 108/178 (60%), Gaps = 11/178 (6%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQ--RPP 62
V IL+ + F D RG+F ++Y+ K + GL FVQDNHS S G +RGLH+Q +P
Sbjct: 11 VLILEPKVFGDDRGFFFESYNRKTFALDTGLDVEFVQDNHSKSAQ-GVLRGLHYQLVKP- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G ++D+AVD+RR+SP + WV +E+SA N +++P GF HGF+ L
Sbjct: 69 --QGKLVRAVTGTVWDVAVDLRRSSPRFKQWVGVELSAQNQRLLWVPPGFGHGFVVLSET 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL----PSVSEKDQNLPFLNQID 176
+ +YK TD++ EHD +AW D + I WPL L PS++ KD P L Q +
Sbjct: 127 ADFLYKTTDYWYPEHDRNLAWNDPELAIAWPLKGLHLPGGQPSLAAKDAAAPRLAQAE 184
>gi|91774154|ref|YP_566846.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanococcoides burtonii DSM
6242]
gi|91713169|gb|ABE53096.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein
[Methanococcoides burtonii DSM 6242]
Length = 183
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 108/172 (62%), Gaps = 7/172 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I + ILK + F D RG+F ++Y++++L EL G + FVQDN S S G IRGLH+Q
Sbjct: 7 KIEDLYILKPKVFGDERGYFFESYNARVLDELVGKKYNFVQDNESRS-SYGVIRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PY+Q KLVR I G ++D+ VD+R+ S T+G WV +E+S +N Q IP GFAHGF L
Sbjct: 66 EPYSQTKLVRVIQGTVYDVVVDLRKESCTFGEWVGVELSEDNKKQFLIPKGFAHGFSVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL--DTILPSVSEKDQNLP 170
YK D+Y+ E + G+ + D +++I W + D I V++KD+ LP
Sbjct: 126 ETAIFAYKCDDYYNPESEGGIMYDDPTLNIDWKVKKEDAI---VADKDKELP 174
>gi|213962325|ref|ZP_03390588.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga sputigena
Capno]
gi|213954991|gb|EEB66310.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga sputigena
Capno]
Length = 182
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 105/172 (61%), Gaps = 6/172 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I++ + F D RG+F +++S + E FVQDN S S G +RGLHFQ+PP+AQ
Sbjct: 11 VVIIEPQVFFDDRGYFFESFSQQRFNEQVAPITFVQDNESKS-SYGVLRGLHFQKPPFAQ 69
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
+KLVR + G++ D+AVD+R+ SPT+G + S+ +S N Q +IP GFAHGF L
Sbjct: 70 SKLVRVVKGKVLDVAVDLRKGSPTFGQYESVVLSEENKRQFFIPQGFAHGFAVLSEEAIF 129
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQI 175
YK ++Y+ + + V W D +I I W P D IL S KD+ P L+Q+
Sbjct: 130 QYKCDNYYAPQSEGSVRWNDPTIAIDWQLPEKDIIL---SAKDEKAPLLSQL 178
>gi|117919830|ref|YP_869022.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sp. ANA-3]
gi|117612162|gb|ABK47616.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sp. ANA-3]
Length = 183
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 107/169 (63%), Gaps = 5/169 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQRPPY 63
V++++ + F D RG+F +T++ K + L G FVQDNHS S G +RGLH+Q
Sbjct: 11 VKVIEPKVFGDERGFFMETWNQKQFENLVTGKSTTFVQDNHSKS-KRGILRGLHYQTKD- 68
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
Q KLVR I+G +FD+AVDIR++SPT+G WV +SA N Q++IP GFAHGF +
Sbjct: 69 TQGKLVRVISGEVFDVAVDIRKDSPTFGQWVGEYLSAENKRQLWIPEGFAHGFYVISNEC 128
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN-LPF 171
E +YK T +Y+ ++ + W D ++ I WP+ +T +S KD N +PF
Sbjct: 129 EFVYKCTKYYNPNYEKCLIWNDSNLQIDWPIPETERVLLSSKDSNGIPF 177
>gi|298376300|ref|ZP_06986256.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_1_19]
gi|298267337|gb|EFI08994.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_1_19]
Length = 185
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 108/179 (60%), Gaps = 1/179 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ + +D+RG+F + + +E + FVQDN S S G +RGLH+Q P
Sbjct: 8 IPGVWIIEPKVLKDARGYFMEAFKQAEFEEHIGKIEFVQDNESCS-SKGVLRGLHYQLAP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+Q+KLVR I GR+ D+AVDIR SPT+G +V++E+S N Q++IP GFAHGF L
Sbjct: 67 YSQSKLVRVIKGRVLDVAVDIREGSPTFGKYVAVELSDENKRQLFIPQGFAHGFHVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YKV + Y+ H+ G+ + D ++ + W + D ++SEKD P L + F+Y
Sbjct: 127 AIFTYKVDNPYTPTHERGIRYDDPTVHVDWSITDPESINLSEKDTKAPSLKDAELNFKY 185
>gi|166031255|ref|ZP_02234084.1| hypothetical protein DORFOR_00942 [Dorea formicigenerans ATCC
27755]
gi|166029102|gb|EDR47859.1| hypothetical protein DORFOR_00942 [Dorea formicigenerans ATCC
27755]
Length = 226
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 90/140 (64%), Gaps = 2/140 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG+F +TY+ K ++E GL FVQDN S S G +RGLHFQ+ + Q KLVR + G
Sbjct: 50 DARGYFMETYNQKDMEEAGLTMQFVQDNQSCSTK-GVLRGLHFQKE-FPQGKLVRVVKGS 107
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R +S TYG W +E++ N Q YIP GFAHGF+ L E YK TDFY
Sbjct: 108 VFDVAVDLRSDSETYGKWFGVELTEENKKQFYIPEGFAHGFLVLSEIAEFCYKCTDFYHP 167
Query: 136 EHDSGVAWQDKSIDITWPLL 155
+ G+AW D I + WP L
Sbjct: 168 GDEGGLAWNDPEIGVEWPQL 187
>gi|163814426|ref|ZP_02205815.1| hypothetical protein COPEUT_00577 [Coprococcus eutactus ATCC 27759]
gi|158450061|gb|EDP27056.1| hypothetical protein COPEUT_00577 [Coprococcus eutactus ATCC 27759]
Length = 202
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 89/140 (63%), Gaps = 2/140 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG+F +TY+ K +KE G+ FVQDN S S G +RGLHFQ+ Y Q KLVR + G
Sbjct: 26 DARGYFMETYNEKDMKEAGIDIHFVQDNQSMSTK-GVLRGLHFQKQ-YPQCKLVRAVRGT 83
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R +S TYG W + +SA N Q IP GFAHGF+ L E YKV DF+
Sbjct: 84 VFDVAVDLRSDSATYGKWYGVALSAENKKQFLIPEGFAHGFLVLSDEAEFCYKVNDFWHP 143
Query: 136 EHDSGVAWQDKSIDITWPLL 155
+ G+AW D I I WP L
Sbjct: 144 NDEGGMAWNDPEIGIVWPKL 163
>gi|188994411|ref|YP_001928663.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas gingivalis ATCC
33277]
gi|47080240|dbj|BAD18849.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas gingivalis]
gi|188594091|dbj|BAG33066.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas gingivalis ATCC
33277]
Length = 196
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 111/171 (64%), Gaps = 8/171 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ R F D RG+F +++S + + E G++ + FVQDN S S G +RGLHFQ+P
Sbjct: 8 IPEVVILEPRLFRDDRGYFFESFSRQEI-ETGIRPINFVQDNESAS-RYGVLRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR + G + D AVDIR SPT+G +V++E+S N Q++IP GFAHGF+ L
Sbjct: 66 PHAQSKLVRVVRGCVIDYAVDIRFGSPTFGKYVAVELSDTNFRQLFIPRGFAHGFVVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLP 170
YK ++Y+ + + +AW D ++DI W P+ D IL S KDQ P
Sbjct: 126 EVVFQYKCDNYYAPQSEGAIAWNDSNLDIDWKIPVEDIIL---SAKDQANP 173
>gi|318042943|ref|ZP_07974899.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. CB0101]
Length = 205
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 96/150 (64%), Gaps = 6/150 (4%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLK---ELGLQDV--FVQDNHSFSFDCGTIRGLHFQRPP 62
++ R F D RG+F ++++ + E Q V FVQDNHS S G +RGLH+Q PP
Sbjct: 19 LITPRVFGDDRGFFFESWNQRAFAAALEADGQPVPEFVQDNHSRS-SQGVLRGLHYQLPP 77
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVRC+ G IFD+AVD+RR S ++G WV +SA N Q+++P GFAHGF TL +
Sbjct: 78 HPQGKLVRCVLGEIFDVAVDLRRGSASFGQWVGARLSAANHQQLWVPAGFAHGFFTLSEH 137
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW 152
EV+YK TDF+S + + + W D + I W
Sbjct: 138 AEVLYKTTDFWSRDCERAIRWDDPQLAIAW 167
>gi|84386939|ref|ZP_00989963.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Vibrio splendidus
12B01]
gi|84378229|gb|EAP95088.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Vibrio splendidus
12B01]
Length = 178
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 6/175 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ F D RG F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVKIIEPSVFGDERGLFMETWNQKQFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQT 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR ++G +FD+AVDIR+ SPT+G W+ +SA N Q+++P GFAHGF
Sbjct: 67 E-NTQGKLVRVVSGEVFDVAVDIRKGSPTFGQWIGEYLSAENKRQLWVPEGFAHGFYVTS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ + + +AW D ++ I WPL T P +S+KD+ Q+
Sbjct: 126 DEAEFVYKCTDYYNPQAEISIAWDDDTLRIDWPL--TSPPRLSDKDRQGLLFEQL 178
>gi|189218516|ref|YP_001939157.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylacidiphilum infernorum
V4]
gi|189185374|gb|ACD82559.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylacidiphilum infernorum
V4]
Length = 181
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 3/167 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
++ K ED RG+F++ + + + GL Q N S S GT+RGLH+Q P A+ K
Sbjct: 13 LIDLEKKEDPRGFFARVFCRREYEAHGLDPDIAQINTSLSLKKGTLRGLHYQVFPKAETK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
++RC+ G ++D+ VD+R S TY C E++ N +Y+P GFAHGF+TL NTE Y
Sbjct: 73 VIRCLRGALWDVIVDLRPESKTYLCHYGCELNEENRRMVYVPRGFAHGFLTLADNTEAYY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
V +FYS EH+ G+ + D +++ITWP + +SEKD+N P N+
Sbjct: 133 LVGEFYSPEHERGIRYNDPALNITWPFEPLV---ISEKDRNYPDWNK 176
>gi|221134347|ref|ZP_03560652.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Glaciecola sp. HTCC2999]
Length = 179
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 101/161 (62%), Gaps = 5/161 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I++ F D RG+F +T+ ++ +ELG+ FVQDN+S S G +RGLHFQ+ Y Q
Sbjct: 11 VLIIEPAIFGDDRGFFKETFQAQRYRELGISQDFVQDNYSRS-SYGVLRGLHFQQQ-YPQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV C G +FD+ VDI S T+ VS+EIS N Q+YIP G+AHGF L +
Sbjct: 69 GKLVSCTHGSVFDVIVDIDPGSATFTQHVSIEISGENHRQVYIPPGYAHGFCVLSDTADF 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK TD+Y + ++G+ W D IDI WP+ I P++S KD
Sbjct: 129 MYKCTDYYRPDDEAGILWNDPQIDIAWPI---IHPTLSPKD 166
>gi|300717500|ref|YP_003742303.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Erwinia billingiae Eb661]
gi|299063336|emb|CAX60456.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Erwinia billingiae Eb661]
Length = 181
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 104/166 (62%), Gaps = 5/166 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++ V I + F D+RG+F +++S + E +G FVQDNHS S G +RGLH+Q
Sbjct: 7 SLTDVLIFEPTVFGDTRGFFFESFSQRFFDESVGRHVNFVQDNHSKSAK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KLVRC+ G + DIAVDIR++S ++G WV + ++A N Q++IP GFAHGF+TL
Sbjct: 66 DPDAQGKLVRCVQGEVLDIAVDIRKSSSSFGKWVGVILNAENKRQLWIPEGFAHGFVTLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK T++Y+ + + W D I I W D +L S+KD
Sbjct: 126 DTAEFVYKTTNYYAKNSERSILWNDPEIGIDWKTEDVLL---SDKD 168
>gi|15836862|ref|NP_297550.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa 9a5c]
gi|9105072|gb|AAF83070.1|AE003879_5 dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa 9a5c]
Length = 185
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 103/168 (61%), Gaps = 5/168 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ R F+D+RG F + ++++ + G+ FVQ N S S G +RGLH+Q P Q K
Sbjct: 13 VIEPRVFDDARGEFFEAWNAECFQRQGMSSRFVQSNVSISM-YGVLRGLHYQWP-RPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G ++D+AVDIRR SP YG WV++ +SA N Q++IP GFAHGF+ L Y
Sbjct: 71 LVGVLEGEVYDVAVDIRRGSPHYGRWVAVLLSAKNKRQLWIPEGFAHGFVVLSERAVFNY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
TD Y E D+G+ W D I + WP+ +P +S KDQ PF+ ++
Sbjct: 131 LCTDVYVKEADAGIRWNDALIGVDWPI---AVPLLSAKDQKAPFMEEV 175
>gi|332532393|ref|ZP_08408273.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudoalteromonas
haloplanktis ANT/505]
gi|332038260|gb|EGI74706.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudoalteromonas
haloplanktis ANT/505]
Length = 181
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 109/173 (63%), Gaps = 3/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V+I++ + F D RG+F +T+ ++L + + FVQ+NHS S G +RGLH+Q
Sbjct: 7 SIPDVKIIEPQVFGDERGFFMETFRTELFNQHCGERTFVQENHSKSAH-GILRGLHYQTQ 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR G ++D+AVD+R++SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 -NTQGKLVRVTQGEVYDVAVDMRQSSPTFGQWVGVLLSAENKRQLWVPEGFAHGFYVTTE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ-NLPFLN 173
E +YK TD Y+ + + W D +++I WPL++ LP +S KD+ L F N
Sbjct: 125 TAEFVYKCTDVYNPNVEVSIKWDDPTLNIDWPLVEGKLPQLSAKDEAGLSFKN 177
>gi|329118014|ref|ZP_08246727.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria bacilliformis ATCC
BAA-1200]
gi|327465902|gb|EGF12174.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria bacilliformis ATCC
BAA-1200]
Length = 179
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 99/164 (60%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+IL+ + F D RG+F +T+ K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPEVKILEPQVFGDERGFFMETFRDDWFKAHVCERTFVQENHSQS-GGGVLRGLHYQ-TE 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR +AG +FD+AVD+RRNSPT+G W +SA N Q+++P GFAHGF L
Sbjct: 66 NTQGKLVRVVAGAVFDVAVDLRRNSPTFGQWAGAILSAENKRQLWVPEGFAHGFYVLGGG 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y+ + + W D +I I WPL P +S KD
Sbjct: 126 AEFVYKCTDYYNPRAEHTLLWNDPAIGIAWPLHGE--PKLSAKD 167
>gi|294053939|ref|YP_003547597.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coraliomargarita akajimensis
DSM 45221]
gi|293613272|gb|ADE53427.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coraliomargarita akajimensis
DSM 45221]
Length = 178
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 104/158 (65%), Gaps = 3/158 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F++TY ++ L+ G++ VQ N S+S GT+RGLH Q+ P+ ++KL+R +AG
Sbjct: 21 DDRGYFARTYCAQELEAHGIESRVVQSNTSYSRYAGTMRGLHMQQAPHEESKLMRAVAGS 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
D+ VD+R SPTY +E+SA N +Y+P GFAHGF+TL +TE +Y V+++Y+
Sbjct: 81 FLDVMVDLRPQSPTYLQHYKIELSAQNRRMVYVPGGFAHGFLTLVDHTEALYMVSEYYTP 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
++GV + D ++ I WP+ + VSEKD+ P L+
Sbjct: 141 GAETGVRYDDPALGIEWPI---PVREVSEKDRTWPLLS 175
>gi|72132992|gb|AAZ66345.1| RmlC [Listonella anguillarum]
Length = 184
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 113/179 (63%), Gaps = 9/179 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T++ + +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPTVFGDERGFFMETWNQQRFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 TEN-TQGKLVRVVSGEVFDVAVDIRKDSPTFGKWVGVHLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYS--VEHDS-GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++Y+ EHD + W D+SI+I WP + P +SEKD + L+ I
Sbjct: 125 SEEAEFVYKCTNYYNPEAEHDEHTLLWNDESINIDWP--NKTCPLLSEKDVHGKHLSDI 181
>gi|190572701|ref|YP_001970546.1| putative DTDP-dehydrorhamnose 3,5-epimerase [Stenotrophomonas
maltophilia K279a]
gi|190010623|emb|CAQ44232.1| putative DTDP-dehydrorhamnose 3,5-epimerase [Stenotrophomonas
maltophilia K279a]
Length = 185
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 102/168 (60%), Gaps = 5/168 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ F D+RG+F +T++++ LGL D FVQ N S S G +RGLH+Q P Q K
Sbjct: 13 VIEPAVFGDARGYFFETWNAERFAALGLPDRFVQSNVSTSAK-GVLRGLHYQWP-RPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G ++D+AVDIRR SPT+G W ++ +SA N Q +IP GFAHGF L Y
Sbjct: 71 LVSVLEGEVYDVAVDIRRGSPTFGQWEAVVLSAENKKQFWIPEGFAHGFAVLSERAVFSY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T+ Y + D+GV W D I + WP+ P++S KD+N PFL I
Sbjct: 131 LCTEVYLKDFDAGVRWNDADIAVDWPI---SAPTLSAKDENAPFLKDI 175
>gi|187251274|ref|YP_001875756.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Elusimicrobium minutum
Pei191]
gi|186971434|gb|ACC98419.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Elusimicrobium minutum
Pei191]
Length = 185
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 104/167 (62%), Gaps = 6/167 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
++ + F+D RG+F ++Y+ K+ ++ G+ FVQDN SFS IRGLHFQ PP+AQAK
Sbjct: 13 VITPKIFKDERGYFFESYNKKVFEDAGIVSNFVQDNQSFSVK-NVIRGLHFQAPPHAQAK 71
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR G+++D+AVD+R S T+G W +E+S N YIP GFAHGF L + Y
Sbjct: 72 LVRAQRGKVWDVAVDLRPQSKTFGQWFGVELSEENQKMFYIPRGFAHGFSVLSESAVFQY 131
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFL 172
K +FY+ E + G+ + D ++I W P I V+EKD++ P+
Sbjct: 132 KCDNFYNKESEGGILYNDAVLNIDWKVPFGGEI---VNEKDKSYPWF 175
>gi|172036645|ref|YP_001803146.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. ATCC 51142]
gi|171698099|gb|ACB51080.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. ATCC 51142]
Length = 181
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 108/173 (62%), Gaps = 8/173 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ- 59
I V I++ R F D RG+F ++Y+ K E G++ FVQDNHS S +RGLH+Q
Sbjct: 7 KIPDVVIIEPRVFGDDRGFFYESYNQKAFTEATGIERNFVQDNHSRS-QKNVLRGLHYQI 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P Q KLVR + G + D+AVDIR++SPT+G WVS +S N Q ++P GFAHGF+ L
Sbjct: 66 QQP--QGKLVRVVVGEVLDVAVDIRKSSPTFGQWVSCLLSEENKRQFWVPEGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN-LPF 171
E +YK TD+Y+ +++ + W D + I W L D P +S+KDQ LPF
Sbjct: 124 SDAAEFLYKTTDYYAPQYERSILWNDPDLAIDWQLKDE--PKLSKKDQEGLPF 174
>gi|116074424|ref|ZP_01471686.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. RS9916]
gi|116069729|gb|EAU75481.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. RS9916]
Length = 195
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 104/164 (63%), Gaps = 4/164 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+++ F D RGWF ++++ + + +G VF QDNHS S G +RGLH+Q P QA
Sbjct: 19 LIQPSVFGDDRGWFFESWNQQRFDDAVGSPVVFSQDNHSRS-SRGVLRGLHYQLAPQPQA 77
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR G +FD+AVD+R+ SPT+G WV E++A N Q++IP GFAHGF+TL EV
Sbjct: 78 KLVRVSLGAVFDVAVDLRQKSPTFGHWVGAELTAENKAQLWIPEGFAHGFLTLSEVAEVQ 137
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQN 168
YK F++ + + + W D S+ ITWP+ L S+S+KD +
Sbjct: 138 YKARGFWNKDCERAIRWDDPSLAITWPVHQLKGTAVSLSDKDAD 181
>gi|53720294|ref|YP_109280.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Burkholderia pseudomallei
K96243]
gi|53725972|ref|YP_103575.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei ATCC
23344]
gi|124385294|ref|YP_001028707.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei NCTC
10229]
gi|126452584|ref|YP_001067377.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
1106a]
gi|134280426|ref|ZP_01767137.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
305]
gi|167000834|ref|ZP_02266639.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei PRL-20]
gi|167720870|ref|ZP_02404106.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
DM98]
gi|167739852|ref|ZP_02412626.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei 14]
gi|167817074|ref|ZP_02448754.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei 91]
gi|167825484|ref|ZP_02456955.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei 9]
gi|167846974|ref|ZP_02472482.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
B7210]
gi|167895556|ref|ZP_02482958.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
7894]
gi|167912205|ref|ZP_02499296.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
112]
gi|167920166|ref|ZP_02507257.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
BCC215]
gi|226193862|ref|ZP_03789464.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
Pakistan 9]
gi|237813506|ref|YP_002897957.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
MSHR346]
gi|238560979|ref|ZP_04609372.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei GB8 horse
4]
gi|242316360|ref|ZP_04815376.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
1106b]
gi|254175405|ref|ZP_04882065.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei ATCC
10399]
gi|254180916|ref|ZP_04887514.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
1655]
gi|254191761|ref|ZP_04898264.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
Pasteur 52237]
gi|254202265|ref|ZP_04908628.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei FMH]
gi|254207598|ref|ZP_04913948.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei JHU]
gi|254261524|ref|ZP_04952578.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
1710a]
gi|254298971|ref|ZP_04966421.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
406e]
gi|254356500|ref|ZP_04972776.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei
2002721280]
gi|262193266|ref|YP_001081387.2| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei NCTC
10247]
gi|284159929|ref|YP_001060114.2| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
668]
gi|3135676|gb|AAD05456.1| putative dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase [Burkholderia
pseudomallei 1026b]
gi|13518095|gb|AAK27393.1| putative dTDP-4-keto-6-deoxy-D-glucose [Burkholderia mallei]
gi|52210708|emb|CAH36692.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Burkholderia pseudomallei
K96243]
gi|52429395|gb|AAU49988.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei ATCC
23344]
gi|124293314|gb|ABN02583.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei NCTC
10229]
gi|126226226|gb|ABN89766.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
1106a]
gi|134248433|gb|EBA48516.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
305]
gi|147746512|gb|EDK53589.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei FMH]
gi|147751492|gb|EDK58559.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei JHU]
gi|148025497|gb|EDK83651.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei
2002721280]
gi|157809171|gb|EDO86341.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
406e]
gi|157939432|gb|EDO95102.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
Pasteur 52237]
gi|160696449|gb|EDP86419.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei ATCC
10399]
gi|184211455|gb|EDU08498.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
1655]
gi|225934167|gb|EEH30152.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
Pakistan 9]
gi|237506837|gb|ACQ99155.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
MSHR346]
gi|238525295|gb|EEP88723.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei GB8 horse
4]
gi|242139599|gb|EES26001.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
1106b]
gi|243063264|gb|EES45450.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei PRL-20]
gi|254220213|gb|EET09597.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
1710a]
gi|261835086|gb|ABO07153.2| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei NCTC
10247]
gi|283775101|gb|ABN83873.2| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
668]
Length = 183
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 109/164 (66%), Gaps = 9/164 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL---GLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
V+I++ + F D+RG+F ++++++ EL G++ FVQDNHS S G +RGLH+Q
Sbjct: 13 VKIIEPKVFGDARGFFFESFNAREFTELVEPGIE--FVQDNHSRS-ARGVLRGLHYQ-IQ 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVR + G +FD+AVD+RR+SP +G WV + +SA N Q+++P GFAHGF+ L +
Sbjct: 69 HAQGKLVRVVDGEVFDVAVDVRRSSPNFGKWVGVRLSAENKRQLWVPAGFAHGFVVLSES 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ +YK TD++ E + + W DK I I WP+ P V+ KD
Sbjct: 129 ADFLYKTTDYWYPEFERSILWSDKQIGIEWPIDRE--PLVAAKD 170
>gi|67920202|ref|ZP_00513722.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Crocosphaera watsonii WH
8501]
gi|67857686|gb|EAM52925.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Crocosphaera watsonii WH
8501]
Length = 181
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 105/172 (61%), Gaps = 6/172 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I++ R F D RG+F ++Y+ K E G+ FVQDNHS S + +RGLH+Q
Sbjct: 7 KIPDVVIIEPRIFGDDRGFFYESYNHKAFTEATGISRNFVQDNHSKS-ERNVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G + D+AVDIR++SPT+G WVS +SA N Q ++P GFAHGF+
Sbjct: 66 QQ-TQGKLVRVVTGEVLDVAVDIRKSSPTFGQWVSCLLSAENKRQFWVPEGFAHGFVVSS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ-NLPF 171
E +YK TD+Y+ EH+ + W D + I W L P +S+KDQ LPF
Sbjct: 125 DAAEFLYKTTDYYAPEHERSILWNDPDLAIDWQLKGE--PKLSKKDQEGLPF 174
>gi|312131997|ref|YP_003999337.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Leadbetterella byssophila DSM
17132]
gi|311908543|gb|ADQ18984.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leadbetterella byssophila DSM
17132]
Length = 177
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 100/159 (62%), Gaps = 5/159 (3%)
Query: 12 RKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
R FED RG+F ++Y+ +L K G+ + F+QDN SFS G IRGLHFQR P+AQ KLVR
Sbjct: 17 RIFEDDRGYFYESYNIELFKANGIPEEFLQDNQSFS-KKGVIRGLHFQRAPFAQGKLVRV 75
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
I G + D+ VDIR SPT+G + S ++ N +Y+P GFAHGF TLE + YK T+
Sbjct: 76 IKGAVLDVVVDIRPESPTFGQYESFLLTEENKKMVYLPEGFAHGFSTLE-DAIFSYKCTN 134
Query: 132 FYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
Y + G+ + D ++I W + + P VS+KD LP
Sbjct: 135 VYHKASEGGIIYNDPDLNIDWQVSN---PVVSDKDLELP 170
>gi|193222278|emb|CAL61333.2| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase) (dTDP-L-rhamnose synthetase)
[Herminiimonas arsenicoxydans]
Length = 181
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 110/170 (64%), Gaps = 7/170 (4%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
M I V +++ + F D RG+F ++++ + +G FVQDNHS S G +RGLH+Q
Sbjct: 6 MAIPDVLLIEPKVFGDDRGFFFESFNEQRFAAAVGKTVEFVQDNHSRSAR-GVLRGLHYQ 64
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
+ P Q KLVR ++G +FD+AVDIR++SPT+G WV +SA N Q++IP GFAHGF+
Sbjct: 65 IQQP--QGKLVRVVSGEVFDVAVDIRKSSPTFGLWVGALLSAENKRQMWIPEGFAHGFVV 122
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+ E +YK TD+++ H+ +AW D +I I WP+ + P +S KDQN
Sbjct: 123 TSDSAEFLYKTTDYWAPGHERCIAWNDPAIGIEWPITGS--PILSGKDQN 170
>gi|257452250|ref|ZP_05617549.1| dTDP-4-dehydrorhamnose reductase [Fusobacterium sp. 3_1_5R]
gi|317058793|ref|ZP_07923278.1| spore coat polysaccharide biosynthesis protein spsK [Fusobacterium
sp. 3_1_5R]
gi|313684469|gb|EFS21304.1| spore coat polysaccharide biosynthesis protein spsK [Fusobacterium
sp. 3_1_5R]
Length = 470
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 108/170 (63%), Gaps = 6/170 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I+ T KFED RG+FS+ Y KELG+QD F+Q+N S+S GT+RGLHFQ
Sbjct: 10 ELEGVYIIDTLKFEDERGYFSEIYQKDCFKELGIQDDFIQENISYSKK-GTLRGLHFQTK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KL+R + G+I+D+ VD+R NS TYG + +E+ + ++IP G AHGF++L+
Sbjct: 69 K-KQGKLLRVLKGKIYDVIVDLRENSKTYGQHIGIELQGQDQKLLWIPPGCAHGFLSLDE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD-TILPS---VSEKDQ 167
V Y+ T+ Y+ E++SG+ W D ++I W L + IL +SEKD+
Sbjct: 128 KNVVQYQCTENYAAEYESGILWSDTDLNIDWKLKEYGILKEELIISEKDR 177
>gi|134094385|ref|YP_001099460.1| dTDP-4,deoxyrhamnose 3,5 epimerase [Herminiimonas arsenicoxydans]
Length = 176
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 110/170 (64%), Gaps = 7/170 (4%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
M I V +++ + F D RG+F ++++ + +G FVQDNHS S G +RGLH+Q
Sbjct: 1 MAIPDVLLIEPKVFGDDRGFFFESFNEQRFAAAVGKTVEFVQDNHSRS-ARGVLRGLHYQ 59
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
+ P Q KLVR ++G +FD+AVDIR++SPT+G WV +SA N Q++IP GFAHGF+
Sbjct: 60 IQQP--QGKLVRVVSGEVFDVAVDIRKSSPTFGLWVGALLSAENKRQMWIPEGFAHGFVV 117
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+ E +YK TD+++ H+ +AW D +I I WP+ + P +S KDQN
Sbjct: 118 TSDSAEFLYKTTDYWAPGHERCIAWNDPAIGIEWPITGS--PILSGKDQN 165
>gi|78184213|ref|YP_376648.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Synechococcus sp.
CC9902]
gi|78168507|gb|ABB25604.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. CC9902]
Length = 196
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 99/166 (59%), Gaps = 4/166 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
++ R F D RGWF ++++ K E Q V F QDNHS S G +RGLH+Q P QA
Sbjct: 19 LITPRAFGDDRGWFFESWNQKRFNEAVGQSVEFSQDNHSRSIQ-GVLRGLHYQLAPEPQA 77
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR G IFD+A+DIR+ SPT G WV +SA N Q++IP GFAHGF+TL EV
Sbjct: 78 KLVRSSVGSIFDVAIDIRQTSPTCGQWVGAVLSAENKAQLWIPEGFAHGFLTLSPVAEVQ 137
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLP 170
YK F++ + + W D ++ I WP L+ S+S+KD P
Sbjct: 138 YKARGFWNKACERAIRWDDPNLAIDWPQAELNGTAISLSDKDAEAP 183
>gi|13541732|ref|NP_111420.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoplasma volcanium GSS1]
gi|14325138|dbj|BAB60063.1| NDP-sugar epimerase [Thermoplasma volcanium GSS1]
Length = 179
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/157 (49%), Positives = 103/157 (65%), Gaps = 8/157 (5%)
Query: 13 KFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
++ED+RG+F + Y + + L FVQDNHSFS G IRGLHFQR P AQ KLV I
Sbjct: 20 RYEDNRGYFEERYKASEFDRI-LHVRFVQDNHSFS-RRGVIRGLHFQREPMAQGKLVGVI 77
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
GRI+D+AVD+R++S T+G WV +S N L +IP GFAHGF LE ++ V+YKV +
Sbjct: 78 TGRIYDVAVDLRKDSVTFGKWVYRVLSNNEML--WIPRGFAHGFQALE-DSHVVYKVDNE 134
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
+S +H+ G+ + D + I WP+ D P VSEKD L
Sbjct: 135 FSRQHEDGIIFNDPDLAIDWPIKD---PIVSEKDIKL 168
>gi|269793219|ref|YP_003318123.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100854|gb|ACZ19841.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 186
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 105/172 (61%), Gaps = 7/172 (4%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F DSRG+F QT+ ++ ++ G+ + FVQDN S S GT+RGLH+Q+P Q KLV +
Sbjct: 19 FGDSRGYFLQTWQARQYRDAGISEFFVQDNLSLS-RKGTLRGLHYQKP-NTQGKLVFVLK 76
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G ++D+AVD+R SPT+G W + + Q+YIP GFAHGF + YK TDFY
Sbjct: 77 GEVWDVAVDLRVGSPTFGKWEGVTLKGQTHNQLYIPPGFAHGFCVISDEALFTYKCTDFY 136
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI--DSPFEYDG 183
+ +++ G+ W D +DI WP+ D IL S KD P L I +S F ++G
Sbjct: 137 APQNEHGIIWNDPDLDIPWPVKDPIL---SAKDGRYPRLRDIPGESLFRWEG 185
>gi|282898610|ref|ZP_06306598.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein
[Cylindrospermopsis raciborskii CS-505]
gi|281196478|gb|EFA71387.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein
[Cylindrospermopsis raciborskii CS-505]
Length = 181
Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 110/170 (64%), Gaps = 9/170 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ- 59
I V +++ + F D RG+F ++++ KL E G+ FVQDNHS S +RGLH+Q
Sbjct: 7 EIPDVLLIEPQVFGDERGFFYESFNEKLFTEKTGISPHFVQDNHSRS-GKNVLRGLHYQI 65
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
+P Q KLVR AG +FDIAVD+R++SPT+ WV + +S+ N Q++IP GFAHGF+
Sbjct: 66 QQP---QGKLVRVAAGEVFDIAVDLRKSSPTFSQWVGVYLSSANKHQLWIPPGFAHGFLV 122
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
L + +YK TD+Y+ E+D G+ W D + I+WP+ + P VS KD++
Sbjct: 123 LSEYADFLYKTTDYYAPEYDRGILWNDPDLAISWPIGNE--PIVSSKDKS 170
>gi|325680882|ref|ZP_08160419.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruminococcus albus 8]
gi|324107346|gb|EGC01625.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruminococcus albus 8]
Length = 183
Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 102/173 (58%), Gaps = 4/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I+ + + D+RG+F +TY K GL FVQDN S S G +RGLHFQ+
Sbjct: 10 KIKGVYIIDVKTYGDNRGYFMETYKEADFKAAGLDYNFVQDNQSSS-RKGVLRGLHFQKT 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ QAKLVR I G +FD+AVD+R+ S TYG WV + +S N Q IP GFAHGF+ +
Sbjct: 69 -HPQAKLVRVIKGEVFDVAVDLRKGSETYGQWVGVLLSEENHRQFMIPRGFAHGFVVVSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E YK D Y E + G+ W D +I I W + ++ +SEKD++ P L +
Sbjct: 128 YAEFAYKCDDVYHPEDEGGIMWNDPAIGIEWADVGEVI--LSEKDKHHPSLAE 178
>gi|288800122|ref|ZP_06405581.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella sp. oral taxon 299
str. F0039]
gi|288333370|gb|EFC71849.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella sp. oral taxon 299
str. F0039]
Length = 181
Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 105/162 (64%), Gaps = 1/162 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V I++++ F D RG+F ++++SK E F+QDN S S G +RGLH+Q+
Sbjct: 8 LKGVWIIESKVFNDDRGYFFESWNSKSFTEHIGAINFIQDNESKS-SYGVLRGLHYQKGD 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQAKLVR I G + D+AVD+RR+SPT+G +V++E+S N Q++IP GFAHGF+ L
Sbjct: 67 AAQAKLVRVIKGNVLDVAVDLRRSSPTFGKYVAVELSETNKRQLFIPRGFAHGFLVLSPE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSE 164
YKV + Y+ E ++ + W D S+ I WP+ D ++ SV +
Sbjct: 127 AIFCYKVDNVYAPEKEATLMWNDDSVSINWPIKDGLIFSVKD 168
>gi|254416320|ref|ZP_05030074.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Microcoleus chthonoplastes
PCC 7420]
gi|196177002|gb|EDX72012.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Microcoleus chthonoplastes
PCC 7420]
Length = 181
Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 104/165 (63%), Gaps = 9/165 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ--RPP 62
V I++ R F D RG+F ++Y+ K E + FVQDNHS S +RGLH+Q +P
Sbjct: 11 VVIIEPRVFGDERGFFLESYNQKAFTEKANIAANFVQDNHSRSVK-NVLRGLHYQIQQP- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR I G + D+AVDIR++SPT+G WVS +SA N QI+IP GFAHGF+ +
Sbjct: 69 --QGKLVRAIVGTVLDVAVDIRQSSPTFGQWVSCLLSAENKRQIWIPPGFAHGFLVVSEV 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
EVIYK TD+Y+ +H+ + W D + I W L T P +S KDQ
Sbjct: 127 AEVIYKTTDYYAPQHERTLLWNDPDLGIDWDL--TTEPILSAKDQ 169
>gi|262383284|ref|ZP_06076420.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_33B]
gi|262294182|gb|EEY82114.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_33B]
Length = 185
Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 108/179 (60%), Gaps = 1/179 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ + +D+RG+F + + +E + FVQDN S S G +RGLH+Q P
Sbjct: 8 IPGVWIIEPKVLKDARGYFMEAFKQAEFEEHIGKIEFVQDNESCS-SKGVLRGLHYQLAP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+Q+KLVR I GR+ D+AVD+R SPT+G +V++E+S N Q++IP GFAHGF L
Sbjct: 67 YSQSKLVRVIKGRVLDVAVDVREGSPTFGKYVAVELSDENKRQLFIPQGFAHGFHVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YKV + Y+ H+ G+ + D ++ + W + D ++SEKD P L + F+Y
Sbjct: 127 AIFTYKVDNPYAPTHERGIRYDDPTVHVDWGITDPESINLSEKDTKAPSLKDAELNFKY 185
>gi|258653357|ref|YP_003202513.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nakamurella multipartita DSM
44233]
gi|258556582|gb|ACV79524.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nakamurella multipartita DSM
44233]
Length = 181
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 110/176 (62%), Gaps = 3/176 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V I++ + D RG+F++++ GL VQ N S++ GT+RG+HFQ P
Sbjct: 8 IDGVAIVELEERRDDRGFFARSFCQDEFAAHGLLPEVVQCNLSYNHRAGTLRGMHFQLEP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AKLVRCI+G I DI VD+R SPTY V++E+SA N Y+P FAHGF TL N
Sbjct: 68 ATEAKLVRCISGAIVDIIVDLRPGSPTYRQHVAVELSAANRRSFYVPPMFAHGFQTLVDN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
TEV+Y+V++ Y+ + G+ + D ++ ++WPL + ++S+KD + P L + +P
Sbjct: 128 TEVLYQVSERYTPGQERGLRYDDPALGLSWPL---PVSAISDKDASWPLLEPVGAP 180
>gi|317055130|ref|YP_004103597.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruminococcus albus 7]
gi|315447399|gb|ADU20963.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruminococcus albus 7]
Length = 183
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 100/173 (57%), Gaps = 4/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I+ + + D RG+F +TY K GL FVQDN S S G +RGLHFQ+
Sbjct: 10 KIKGVYIIDVKTYGDERGYFMETYKEDDFKAAGLDYKFVQDNQSSS-RKGVLRGLHFQKT 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ QAKLVR + G +FD+AVD+R+ S TYG WV +S N Q IP GFAHGF+ +
Sbjct: 69 -HPQAKLVRVLKGEVFDVAVDLRKGSETYGQWVGAVLSEENKRQFMIPRGFAHGFLVMSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E YK D Y E + G+ W D +I I W + ++ +SEKD++ P L +
Sbjct: 128 YAEFAYKCDDLYHPEDEGGIMWNDPAIGIEWKDVGELI--LSEKDKHHPSLAE 178
>gi|254195983|ref|ZP_04902408.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
S13]
gi|169652727|gb|EDS85420.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
S13]
Length = 215
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 109/164 (66%), Gaps = 9/164 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL---GLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
V+I++ + F D+RG+F ++++++ EL G++ FVQDNHS S G +RGLH+Q
Sbjct: 45 VKIIEPKVFGDARGFFFESFNAREFTELVEPGIE--FVQDNHSRS-ARGVLRGLHYQ-IQ 100
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVR + G +FD+AVD+RR+SP +G WV + +SA N Q+++P GFAHGF+ L +
Sbjct: 101 HAQGKLVRVVDGEVFDVAVDVRRSSPNFGKWVGVRLSAENKRQLWVPAGFAHGFVVLSES 160
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ +YK TD++ E + + W DK I I WP+ P V+ KD
Sbjct: 161 ADFLYKTTDYWYPEFERSILWSDKQIGIEWPIDRE--PLVAAKD 202
>gi|34541218|ref|NP_905697.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas gingivalis W83]
gi|34397534|gb|AAQ66596.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas gingivalis W83]
Length = 196
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 110/171 (64%), Gaps = 8/171 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ R F D RG+F +++S + + E G++ + FVQDN S S G +RGLHFQ+P
Sbjct: 8 IPEVVILEPRLFRDDRGYFFESFSRQEI-ETGIRPINFVQDNESAS-RYGVLRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR + G + D AVDIR SPT+G +V++E+S N Q++IP GFAHGF+ L
Sbjct: 66 PHAQSKLVRVVRGCVIDYAVDIRFGSPTFGKYVAVELSDTNFRQLFIPRGFAHGFVVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLP 170
YK ++Y+ + + +AW D ++DI W P D IL S KDQ P
Sbjct: 126 EVVFQYKCDNYYAPQSEGAIAWNDPNLDIEWKIPAEDIIL---SAKDQANP 173
>gi|291566907|dbj|BAI89179.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Arthrospira platensis
NIES-39]
Length = 178
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 102/161 (63%), Gaps = 3/161 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ +D RG+FS+++ K E GL VQ N SF+ GT+RG+H+Q P+ +AK
Sbjct: 13 IVELEPIQDERGFFSRSWCQKEFAERGLTSNLVQCNISFNRHKGTLRGMHYQAKPHEEAK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
+VRC G I+D+ +DIR +S T+ WV++E++A N +YIP G AHGF TL NTEV Y
Sbjct: 73 VVRCTMGAIYDVIIDIRPDSATFKQWVAVELTAENRKMLYIPEGMAHGFQTLTDNTEVFY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
++++FY E G+ W D ITW + P +S+KD+N
Sbjct: 133 QMSEFYHPESARGLRWDDPRFGITWIHNN---PIMSDKDKN 170
>gi|282801708|gb|ADB02818.1| RmlC [Escherichia coli]
Length = 180
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 107/166 (64%), Gaps = 4/166 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+I+K ED RG+F ++++ K+ E+ + +FVQDNHS S+ GT+RGLHFQ
Sbjct: 8 IEDVKIIKPIIHEDERGFFMESWNQKVFNEVIGKTIFVQDNHSKSYK-GTLRGLHFQTSN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR I G +FD+ VD+R S T+G WV + +S+ N Q++IP GFAHGF + +
Sbjct: 67 -PQGKLVRVINGEVFDVVVDLRHQSKTFGKWVGVYLSSVNNYQLWIPEGFAHGFYVVSDH 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK TD+Y+ ++W D + I WP LDT P +SEKD++
Sbjct: 126 AEFVYKCTDYYNPYSQQTLSWDDPELGILWP-LDT-APILSEKDKS 169
>gi|241662193|ref|YP_002980553.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia pickettii 12D]
gi|240864220|gb|ACS61881.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia pickettii 12D]
Length = 183
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 105/173 (60%), Gaps = 7/173 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ-RPPY 63
V IL+ + FED RG+F +++++K + G FVQDNHS S +RGLH+Q R P
Sbjct: 13 VLILEPKVFEDQRGFFHESFNAKDFEAATGSSHAFVQDNHSRSLR-NVLRGLHYQVRQP- 70
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
Q KLVR AG +FD+AVDIR+ SP +G WV +SA N Q++IP GFAHGF+
Sbjct: 71 -QGKLVRVTAGEVFDVAVDIRKKSPNFGRWVGAILSAENKRQLWIPEGFAHGFVVTSEQA 129
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+++YK TD++ E++ +AW D + I WP+ ++ VS KD L +
Sbjct: 130 DLLYKTTDYWHPEYERAIAWNDPQLGIAWPIQGEVI--VSAKDAAASLLENAE 180
>gi|172059823|ref|YP_001807475.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria
MC40-6]
gi|171992340|gb|ACB63259.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria
MC40-6]
Length = 183
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 110/172 (63%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V++++ + F D+RG+F ++++ + E +G FVQDNHS S G +RGLH+Q +A
Sbjct: 13 VKLIEPKVFGDARGYFYESFNGREFAEHIGPGIEFVQDNHSRSAK-GVLRGLHYQVQ-HA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVDIRR+SP +G WV + +SA+N Q+++P GFAHGF+ L +
Sbjct: 71 QGKLVRVVEGEVFDVAVDIRRSSPDFGKWVGVTLSADNHRQLWVPPGFAHGFVVLSEAAQ 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD++ EH+ + W D I I WP+ P ++ KD L++ +
Sbjct: 131 FLYKTTDYWYPEHERCIVWDDPEIGIEWPI--DAAPVLAPKDAAGKRLSEAE 180
>gi|71898670|ref|ZP_00680840.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa Ann-1]
gi|71731617|gb|EAO33678.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa Ann-1]
Length = 185
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 102/168 (60%), Gaps = 5/168 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ R F+D+RG F + ++++ + G+ FVQ N S S G +RGLH+Q P Q K
Sbjct: 13 VIEPRVFDDARGEFFEAWNAECFERQGMSSRFVQSNVSISM-YGVLRGLHYQWP-RPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G ++D+AVDIRR SP YG WV++ +SA N Q++IP GFAHGF+ L Y
Sbjct: 71 LVGVLEGEVYDVAVDIRRGSPHYGRWVAVLLSAKNKRQLWIPEGFAHGFVVLSERAVFNY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
TD Y E D+G+ W D I + WP+ P +S KDQ PF+ ++
Sbjct: 131 LCTDVYVKEADAGIRWNDAVIGVDWPIA---APLLSAKDQKAPFMEEV 175
>gi|161525767|ref|YP_001580779.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans ATCC
17616]
gi|189349511|ref|YP_001945139.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans ATCC
17616]
gi|160343196|gb|ABX16282.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans ATCC
17616]
gi|189333533|dbj|BAG42603.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans ATCC
17616]
Length = 183
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 105/162 (64%), Gaps = 5/162 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ + F D+RG+F ++++ + E V FVQDNHS S G +RGLH+Q +A
Sbjct: 13 VKIIEPKVFGDARGYFYESFNGREFAEQVEPGVEFVQDNHSRSAK-GVLRGLHYQIQ-HA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVDIRR+SP +G WV + +SA+N Q+++P GFAHGF+ L +
Sbjct: 71 QGKLVRVVEGEVFDVAVDIRRSSPNFGKWVGVTLSADNHRQLWVPPGFAHGFVVLSEAAQ 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK TD++ EH+ + W D I I WP+ P ++ KD
Sbjct: 131 FLYKTTDYWYPEHERSIVWNDPDIGIEWPI--EFEPLLAAKD 170
>gi|3132257|dbj|BAA28134.1| dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase [Actinobacillus
actinomycetemcomitans]
Length = 180
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 103/165 (62%), Gaps = 4/165 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++L+ + F D RG+F +T+ + +E FVQ+NHS S G +RGLH+Q
Sbjct: 7 KIPDVKLLELQVFGDERGFFMETFRDEWFRENVADHTFVQENHSKSIK-GVLRGLHYQTE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR ++G +FD+AVD+R+NSPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 N-TQGKLVRVVSGAVFDVAVDMRKNSPTFGQWVGEILSAENKRQLWVPEGFAHGFYVLTD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E YK TD+Y+ + + + W D+++ I WPL PS+S KD
Sbjct: 125 EAEFTYKCTDYYNPKAEHSLIWNDETVGIEWPLEGE--PSLSAKD 167
>gi|119475336|ref|ZP_01615689.1| dTDP-4-dehydrorhamnose 3,5-epimerase [marine gamma proteobacterium
HTCC2143]
gi|119451539|gb|EAW32772.1| dTDP-4-dehydrorhamnose 3,5-epimerase [marine gamma proteobacterium
HTCC2143]
Length = 184
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 101/170 (59%), Gaps = 5/170 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I + F D RG+F +TY++ KE G+ + F+QDN SFS G +RGLH+Q P Q
Sbjct: 11 VIIFEPTVFGDDRGYFLETYNADRYKEAGISENFIQDNLSFS-RKGILRGLHYQTP-MEQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV+ I G ++D+AVD+R SPT+G W +S +N QIY+P GFAHGF+
Sbjct: 69 GKLVQVIKGEVYDVAVDVRAGSPTFGHWYGSVLSESNKRQIYVPAGFAHGFVVTSDTALF 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK T+ Y+ ++ +AW D + I WP+ D P VSEKDQ L +
Sbjct: 129 SYKCTELYNPTNERRIAWNDTDLAINWPITD---PLVSEKDQQAVLLKDL 175
>gi|124486242|ref|YP_001030858.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanocorpusculum labreanum
Z]
gi|124363783|gb|ABN07591.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanocorpusculum labreanum
Z]
Length = 193
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 108/170 (63%), Gaps = 11/170 (6%)
Query: 8 ILKTRKFEDSRG----WFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPY 63
I++T F D RG WF + + +L + +++V N S + G+IRG+HFQ+PP+
Sbjct: 16 IVETNAFIDHRGAFARWFCEEELAAVLGKRHIKNV----NFSRTVKKGSIRGMHFQKPPH 71
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
A+ KLVRCI GRI D+ VDIR SPT+ S+E+SA N +P GFAHGF +LE ++
Sbjct: 72 AEMKLVRCIRGRILDVVVDIRAGSPTFLQHYSVELSAENMKMFAVPEGFAHGFQSLEDDS 131
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
E++Y VT+FYS E ++G+ + D ++ I WPL + +SEKD P +N
Sbjct: 132 EIMYLVTEFYSPESEAGLRFSDPALKIEWPL---PVMDISEKDGKHPLVN 178
>gi|313157732|gb|EFR57143.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alistipes sp. HGB5]
Length = 190
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 108/182 (59%), Gaps = 6/182 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V IL+ F D+RG+F ++YS + FVQDN S S G +RGLHFQ+
Sbjct: 8 IDGVVILEPEVFGDARGYFFESYSQRRFDAEVRPVRFVQDNESHS-RYGVLRGLHFQKGR 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+Q+KLVR + GR+ D+AVDIRR SPT+G V++E++ +N Q +IP GFAHGF L
Sbjct: 67 YSQSKLVRVVRGRVLDVAVDIRRGSPTFGRHVAVELTEDNKRQFFIPRGFAHGFAVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL--DTILPSVSEKDQNLPFLNQIDSPFE 180
YK + Y+ E + +AW D S+ I W L D +L S KD P L++ F+
Sbjct: 127 ATFQYKCDNPYAPESEGAIAWNDPSLGIDWRLAPEDVVL---SPKDSAHPLLSEAGELFD 183
Query: 181 YD 182
Y+
Sbjct: 184 YN 185
>gi|320332782|ref|YP_004169493.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Deinococcus maricopensis DSM
21211]
gi|319754071|gb|ADV65828.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Deinococcus maricopensis DSM
21211]
Length = 185
Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 97/159 (61%), Gaps = 3/159 (1%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
ED RG F++TY + E GL+ Q N SF+ GT+RG+HFQ PP+A+ KLVRC G
Sbjct: 20 EDERGGFARTYCGREFAEHGLKVDVAQANLSFNHKAGTLRGMHFQLPPFAETKLVRCTRG 79
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
I D+ VD+R +SPTY V++E+SA N +Y+P FAHG+ L EV+Y+V ++Y+
Sbjct: 80 AILDVIVDLRPDSPTYLQHVAVELSAENRRALYVPELFAHGYQALTDGAEVVYQVGEYYT 139
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
H+ G+ D + + WPL T+ +S KD P L
Sbjct: 140 PGHERGLRHDDPRLGLQWPLPVTV---ISAKDAAWPLLT 175
>gi|307825026|ref|ZP_07655248.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacter tundripaludum
SV96]
gi|307734073|gb|EFO04928.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacter tundripaludum
SV96]
Length = 181
Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 110/176 (62%), Gaps = 7/176 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQ-R 60
I V I++ F D RG+F ++++ + EL DV FVQDNHS S +RGLH+Q R
Sbjct: 8 IPDVLIIEPNVFGDERGFFFESFNRRRFAELTGCDVDFVQDNHSRSVK-NVLRGLHYQIR 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLVR + G +FD+AVDIRR+SP++G V LE+SA N ++IP GFAHGF+ +
Sbjct: 67 QP--QGKLVRVVQGAVFDVAVDIRRSSPSFGQSVGLELSAENKRMLWIPEGFAHGFVVIS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+++ E + +AW D +I I WPL P++S KDQ L + +
Sbjct: 125 ETAEFLYKTTDYWAPEFERSIAWNDPAIGIQWPLQGE--PALSVKDQQATSLAEAE 178
>gi|59710775|ref|YP_203551.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Vibrio fischeri ES114]
gi|59478876|gb|AAW84663.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Vibrio fischeri ES114]
Length = 185
Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 111/171 (64%), Gaps = 6/171 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
I+K + F D RG+F +T+ S+ KE+ G+++ FVQDN S S +RGLHFQ+ Q
Sbjct: 13 IIKPKVFGDERGFFLETFHSQRYKEVAGIKEQFVQDNRSQS-SKNVLRGLHFQKTK-PQG 70
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLV I+G +FD+AVD+R S T+G + ++ +S +N LQ Y+P GFAHGF L + +
Sbjct: 71 KLVTVISGEVFDVAVDLRPESETFGQYEAVVLSGDNKLQFYVPPGFAHGFCVLSESADFQ 130
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
YK TD+Y + +SG+ W D I+I WPL P +SEKD+ P L++I++
Sbjct: 131 YKCTDYYDPDDESGLLWSDPIINIQWPLK---TPLLSEKDKIQPLLSEIEA 178
>gi|221200997|ref|ZP_03574037.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans
CGD2M]
gi|221206551|ref|ZP_03579564.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans
CGD2]
gi|221173860|gb|EEE06294.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans
CGD2]
gi|221178847|gb|EEE11254.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans
CGD2M]
Length = 183
Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 100/150 (66%), Gaps = 3/150 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ + F D+RG+F ++++ + E V FVQDNHS S G +RGLH+Q +A
Sbjct: 13 VKIIEPKVFGDARGYFYESFNGREFAEQVEPGVEFVQDNHSRSAK-GVLRGLHYQIQ-HA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVDIRR+SP +G WV + +SA+N Q+++P GFAHGF+ L +
Sbjct: 71 QGKLVRVVEGEVFDVAVDIRRSSPNFGKWVGVTLSADNHWQLWVPPGFAHGFVVLSEAAQ 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
+YK TD++ EH+ + W D I I WP+
Sbjct: 131 FLYKTTDYWYPEHERSIVWNDPDIGIEWPI 160
>gi|254281914|ref|ZP_04956882.1| dTDP-4-dehydrorhamnose 3,5-epimerase [gamma proteobacterium
NOR51-B]
gi|219678117|gb|EED34466.1| dTDP-4-dehydrorhamnose 3,5-epimerase [gamma proteobacterium
NOR51-B]
Length = 183
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 106/173 (61%), Gaps = 2/173 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V +LK R F D RG+F + ++ + + G+ FVQDNHS S G +RGLHFQ
Sbjct: 8 LSGVMLLKPRVFGDERGFFLEAWNQRTYADAGIDVHFVQDNHSRSRQ-GILRGLHFQTE- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR +G +FD+ VD+R +SPT G W +SA+N Q++IP GFAHGF L +
Sbjct: 66 QTQGKLVRVTSGSVFDVVVDLRADSPTCGQWYGATLSASNHEQLWIPPGFAHGFYVLSES 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ +YK +D+Y E + +AW D S+ I WPL++ P +S KD ++Q+
Sbjct: 126 ADFLYKCSDYYHPESELTLAWNDPSVGIEWPLVNDQPPQLSAKDATGLPIDQV 178
>gi|167580855|ref|ZP_02373729.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia thailandensis
TXDOH]
Length = 183
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 111/172 (64%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ + F D+RG+F ++++++ EL V FVQDNHS S G +RGLH+Q +A
Sbjct: 13 VKIIEPKVFGDARGFFFESFNAREFSELVEPGVEFVQDNHSRS-ARGVLRGLHYQ-IEHA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVD+RR+SP +G WV + +SA N Q+++P GFAHGF+ L + +
Sbjct: 71 QGKLVRVVDGEVFDVAVDVRRSSPNFGKWVGVRLSAENKRQLWVPAGFAHGFVVLSESAD 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD++ E + + W D+ I I WP+ P V+ KD L++ +
Sbjct: 131 FLYKTTDYWYPEFERSILWSDEQIGIEWPIDRE--PLVAAKDAAGKTLSEAE 180
>gi|28198138|ref|NP_778452.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa Temecula1]
gi|182680768|ref|YP_001828928.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa M23]
gi|28056198|gb|AAO28101.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa Temecula1]
gi|182630878|gb|ACB91654.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa M23]
gi|307579234|gb|ADN63203.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 185
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 102/168 (60%), Gaps = 5/168 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ R F+D+RG F + ++++ + G+ FVQ N S S G +RGLH+Q P Q K
Sbjct: 13 VIEPRVFDDARGEFFEVWNAECFEHQGMSSRFVQSNVSISI-YGVLRGLHYQWP-RPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G ++D+AVDIRR SP YG WV++ +SA N Q++IP GFAHGF+ L Y
Sbjct: 71 LVGVLEGEVYDVAVDIRRGSPHYGRWVAVLLSAKNKRQLWIPEGFAHGFVVLSERAVFNY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
TD Y E D+G+ W D I + WP+ P +S KDQ PF+ ++
Sbjct: 131 LCTDVYVKEADAGIRWNDAVIGVDWPIA---APLLSAKDQKAPFMEEV 175
>gi|291543267|emb|CBL16376.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruminococcus sp. 18P13]
Length = 202
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 97/169 (57%), Gaps = 2/169 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ DSRG+F +TY+ ++E GL FVQDN S S G +RGLHFQ+
Sbjct: 12 GIQGLCIIQPAVHGDSRGYFMETYNQNDMQEAGLDIAFVQDNQSCSTK-GVLRGLHFQKQ 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR I G +FD+AVD+R NS TYG W +E++A N Q IP GFAHGF+
Sbjct: 71 -FPQTKLVRVIRGSVFDVAVDLRSNSATYGKWFGVELTAENKKQFLIPKGFAHGFLVRSE 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
E YK DFY + G+AW D +I I W + T S S LP
Sbjct: 130 IAEFCYKCDDFYHPGDEGGLAWNDPAIGIDWGVTGTYPGSASGSGYTLP 178
>gi|146278214|ref|YP_001168373.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides ATCC
17025]
gi|145556455|gb|ABP71068.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides ATCC
17025]
Length = 177
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 99/163 (60%), Gaps = 3/163 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ ED RGWF +T+ + + + GL FVQ N S++ GT+RG+H+QR P+A+ K
Sbjct: 13 LIEAEPREDHRGWFERTFCEEEMAKAGLATRFVQHNSSYNHAVGTLRGMHYQRSPHAEVK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
++ C GRI D+ +D+R +SPTY W ++ A + Q+YIP GFAHG++TLE T V Y
Sbjct: 73 VITCTRGRIHDVIIDLRPDSPTYMKWEGFDLRAGDHRQLYIPEGFAHGYLTLEDATAVSY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
V+ Y+ + GV W D + I W ++ +SEKD P
Sbjct: 133 LVSTAYTPGAEGGVRWDDPTFGIAWAGGVSV---ISEKDAAWP 172
>gi|291513885|emb|CBK63095.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alistipes shahii WAL 8301]
Length = 187
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 105/182 (57%), Gaps = 4/182 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +L+ F D+RG+F + +S + EL FVQDN S S G +RGLHFQ+
Sbjct: 7 EIPGVVLLEPEVFGDARGYFMERFSQRRFDELVGPVRFVQDNESKS-RYGVVRGLHFQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
YAQAKLV + GR+ D+AVDIRR SPT+G V+ + N Q++IP GFAHGF L
Sbjct: 66 EYAQAKLVSVVRGRVLDVAVDIRRGSPTFGRHVAALLDGENKRQLFIPRGFAHGFAVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFE 180
YK ++Y+ + G+AW D ++ I W L IL +SEKD+ P L FE
Sbjct: 126 EAVFQYKCDNYYAPGSEGGIAWDDPALAIDWRLPAGEIL--LSEKDRRHPKLADAPELFE 183
Query: 181 YD 182
YD
Sbjct: 184 YD 185
>gi|83720588|ref|YP_442017.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia thailandensis
E264]
gi|167618956|ref|ZP_02387587.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia thailandensis
Bt4]
gi|257138200|ref|ZP_05586462.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia thailandensis
E264]
gi|83654413|gb|ABC38476.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia thailandensis
E264]
Length = 183
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 111/172 (64%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ + F D+RG+F ++++++ EL V FVQDNHS S G +RGLH+Q +A
Sbjct: 13 VKIIEPKVFGDARGFFFESFNAREFSELVEPGVEFVQDNHSRS-ARGVLRGLHYQ-IQHA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVD+RR+SP +G WV + +SA N Q+++P GFAHGF+ L + +
Sbjct: 71 QGKLVRVVDGEVFDVAVDVRRSSPNFGKWVGVRLSAENKRQLWVPAGFAHGFVVLSESAD 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD++ E + + W D+ I I WP+ P V+ KD L++ +
Sbjct: 131 FLYKTTDYWYPEFERSILWSDEQIGIEWPIDRE--PLVAAKDAAGKTLSEAE 180
>gi|261400014|ref|ZP_05986139.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria lactamica ATCC
23970]
gi|269210232|gb|EEZ76687.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria lactamica ATCC
23970]
Length = 185
Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 97/161 (60%), Gaps = 4/161 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V++LK + F+D RG+F +T+ KE FVQ+NHS S G +RGLH+Q Q
Sbjct: 11 VKLLKPQVFKDGRGFFMETFRDGWFKENIADRTFVQENHSQS-RKGVLRGLHYQ-TENTQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L EV
Sbjct: 69 GKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNRYQLWIPEGFAHGFYVLGDTAEV 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK TD+Y E + + W D +I I WPL P +S KD
Sbjct: 129 VYKCTDYYKPEAEQVLIWNDPAIGIGWPL--QTAPLLSPKD 167
>gi|167753452|ref|ZP_02425579.1| hypothetical protein ALIPUT_01726 [Alistipes putredinis DSM 17216]
gi|167658077|gb|EDS02207.1| hypothetical protein ALIPUT_01726 [Alistipes putredinis DSM 17216]
Length = 190
Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 107/181 (59%), Gaps = 6/181 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ + F D RG+F ++YS + + FVQDN S S G +RGLHFQ+
Sbjct: 8 IKDVVIIEPQVFGDDRGYFFESYSQQQFDQAVRPVHFVQDNESKS-RRGVLRGLHFQKGA 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ+KLVR + GR+ D+AVDIRR SPT+G V++E++A N Q+++P GFAHGF L
Sbjct: 67 AAQSKLVRVVQGRVLDVAVDIRRGSPTFGKHVAVELTAENHRQLFVPRGFAHGFSVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPFE 180
YK +FY+ + + +AW D + I W P + IL S KD+ P L D F+
Sbjct: 127 AVFQYKCDNFYAPQSEGAIAWNDPDLGIDWQLPAEEAIL---SPKDRAHPRLKDADELFD 183
Query: 181 Y 181
Y
Sbjct: 184 Y 184
>gi|299140529|ref|ZP_07033667.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella oris C735]
gi|298577495|gb|EFI49363.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella oris C735]
Length = 182
Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 105/164 (64%), Gaps = 2/164 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ F D+RG+F + + ++ ++ + F+QDN S S G +RGLH+Q+
Sbjct: 8 IKGVYIIEPHVFNDARGYFFEAWKNEEFQQYVGKINFIQDNESKS-SYGVLRGLHYQKGE 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+QAKLVR I G++ D+AVDIR++SPT+G +V +E+S N Q +IP GFAHGF+ L
Sbjct: 67 YSQAKLVRVIKGKVLDVAVDIRKSSPTFGKYVMVELSDENKRQFFIPRGFAHGFLVLSEE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YKV + Y+ +H++ + W D+ I I WP ++T SEKD
Sbjct: 127 AIFTYKVDNVYAPQHEASIRWNDEDIHIEWP-IETKDVLTSEKD 169
>gi|209518632|ref|ZP_03267450.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. H160]
gi|209500915|gb|EEA00953.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. H160]
Length = 183
Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 102/150 (68%), Gaps = 3/150 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ + F D+RG+F ++++++ E +G+ FVQDNHS S G +RGLH+Q +A
Sbjct: 13 VKIIEPKVFGDARGFFFESFNAREFAEKVGVDAEFVQDNHSRS-AKGVLRGLHYQ-IQHA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVDIR++SP +G WV + +S N Q+++P GFAHGF+ L + +
Sbjct: 71 QGKLVRVVEGEVFDVAVDIRKSSPNFGKWVGVTLSVENHRQLWVPPGFAHGFVVLSESAQ 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
+YK TD++ EH+ + W D + I WP+
Sbjct: 131 FLYKTTDYWFPEHERSIIWNDPDVGIEWPI 160
>gi|149925740|ref|ZP_01914004.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Limnobacter sp. MED105]
gi|149825857|gb|EDM85065.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Limnobacter sp. MED105]
Length = 185
Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 1 MNINP-----VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIR 54
M NP + +L + D+RG F +++++K K++ G+Q FVQ N S S G +R
Sbjct: 3 MQCNPTPLQGLLLLTPTVYTDARGHFFESFNAKTFKQVAGIQPEFVQTNESLS-KRGVLR 61
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
GLH+Q P AQ KLVR + G +FD+AVD+R NS T+G W E+S N +Q++IP GFAH
Sbjct: 62 GLHWQTAPKAQGKLVRVVHGAVFDVAVDLRENSETFGQWYGCELSDINHVQLWIPPGFAH 121
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQN 168
GF+TL Y+VT+ +S EH+ +AW D ++I WPL P++S KD+
Sbjct: 122 GFLTLTDTAITSYQVTEHHSPEHEHCMAWNDPVLNIEWPLRRAGVATPTLSPKDEQ 177
>gi|209967017|ref|YP_002299932.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Rhodospirillum
centenum SW]
gi|209960483|gb|ACJ01120.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Rhodospirillum
centenum SW]
Length = 177
Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 97/169 (57%), Gaps = 3/169 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V ++ D RG F++ + + GL F Q + SF+ GT+RGLHFQ P
Sbjct: 7 TIPGVTVVDLEPIRDRRGHFARCFCADAFAARGLPTDFPQHSLSFNAVAGTVRGLHFQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ + KL+RC G IFD+AVD+R SPT+ WV +E+SA+ G +YIP G AHGF TL
Sbjct: 67 PHGEPKLIRCTRGAIFDVAVDLRPESPTWRQWVGIELSASTGRALYIPPGLAHGFQTLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
TEV+Y + + E G W D + I WPL T+ +SE+D + P
Sbjct: 127 ETEVLYMMGVRFVPEAARGYRWNDPAFGIDWPLPPTL---ISERDLSFP 172
>gi|77456517|ref|YP_346022.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas fluorescens
Pf0-1]
gi|77380520|gb|ABA72033.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas fluorescens
Pf0-1]
Length = 193
Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 106/172 (61%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I++ + F D RG+F +++++K ++ GL FVQDNHS S G +RGLH+Q
Sbjct: 23 VLIIEPKVFGDERGFFYESFNAKAFQDATGLDTQFVQDNHSRS-QKGVLRGLHYQLEN-T 80
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR AG + D+AVDIRR+SP +G WV++ +SA+N Q+++P GFAHGF+ L E
Sbjct: 81 QGKLVRVTAGEVLDVAVDIRRSSPHFGKWVAVRLSADNHRQLWVPEGFAHGFVVLSEFAE 140
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD+Y+ + + W D + I W L + P +S KDQ L D
Sbjct: 141 FLYKTTDYYNPSSERSIRWDDPDLGIDWQLDEA--PKLSAKDQAAALLKDAD 190
>gi|206561477|ref|YP_002232242.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase [Burkholderia
cenocepacia J2315]
gi|198037519|emb|CAR53456.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase [Burkholderia
cenocepacia J2315]
Length = 183
Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 108/172 (62%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ R F D+RG+F ++++ K E V FVQDNHS S G +RGLH+Q +A
Sbjct: 13 VKIIEPRVFGDARGFFYESFNGKEFAERVEPGVEFVQDNHSRS-SKGVLRGLHYQIQ-HA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVDIR+NSP +G WV + +S +N Q+++P GFAHGF+ L +
Sbjct: 71 QGKLVRVVEGEVFDVAVDIRKNSPNFGKWVGVVLSDDNHRQLWVPPGFAHGFVVLSDAAQ 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD++ EH+ + W D I I WP+ P ++ KD L++ D
Sbjct: 131 FLYKTTDYWFPEHERSIVWNDPEIGIEWPI--DFEPLLAVKDAAGKQLSEAD 180
>gi|325527144|gb|EGD04547.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. TJI49]
Length = 183
Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 100/150 (66%), Gaps = 3/150 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ + F D+RG+F ++++ + E V FVQDNHS S G +RGLH+Q +A
Sbjct: 13 VKIIEPKVFGDARGYFYESFNGREFAEHVEPGVEFVQDNHSRSAK-GVLRGLHYQIQ-HA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVDIR++SP +G WV + +SA+N Q+++P GFAHGF+ L +
Sbjct: 71 QGKLVRVVEGEVFDVAVDIRKHSPNFGKWVGVTLSADNHRQLWVPPGFAHGFVVLSEAAQ 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
+YK TD++ EH+ + W D I I WP+
Sbjct: 131 FLYKTTDYWYPEHERSIVWNDPEIGIEWPI 160
>gi|302875844|ref|YP_003844477.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium cellulovorans
743B]
gi|307689277|ref|ZP_07631723.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium cellulovorans
743B]
gi|302578701|gb|ADL52713.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium cellulovorans
743B]
Length = 185
Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 100/177 (56%), Gaps = 2/177 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ F D RG+F +TY+ KE GL VFVQDN S S G +RGLHFQ
Sbjct: 11 IKDLYIIEPTVFGDHRGYFMETYNYDEFKEAGLDMVFVQDNQSKS-KKGVLRGLHFQ-TK 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR I G ++D+AVD+R S TYG + +S N Q Y+P GFAHGF+
Sbjct: 69 FPQGKLVRVIKGEVYDVAVDLREGSETYGKCYGVFLSEENKRQFYVPEGFAHGFLVTSEE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
E +YK T+ Y E + G+ W D I + WPL +S+KD+N L + + F
Sbjct: 129 AEFVYKCTNLYHPEFEGGILWNDPEIGVEWPLDGIEEVLLSDKDKNAKTLKESNVKF 185
>gi|73667779|ref|YP_303794.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanosarcina barkeri str.
Fusaro]
gi|72394941|gb|AAZ69214.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanosarcina barkeri str.
Fusaro]
Length = 183
Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 100/154 (64%), Gaps = 2/154 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQR 60
I + +L+ + FED RG+F ++Y+ K L L ++ FVQDN S S G IRGLH+Q
Sbjct: 7 KIKDLYMLEPKVFEDDRGYFLESYNKKTLDSLLEKEYTFVQDNESKS-SYGVIRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P++QAKL+R + G+++D+AVD+R+NSPT+ WV +E+SA N Q IP GFAHGF L
Sbjct: 66 GPFSQAKLIRVVQGKVYDVAVDLRKNSPTFLDWVGVELSAENKRQFLIPKGFAHGFSVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
YK ++Y E ++G+ + D S++I W +
Sbjct: 126 ETAIFQYKCDEYYHPEAEAGIIYNDSSLNIDWKI 159
>gi|320101333|ref|YP_004176925.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfurococcus mucosus DSM
2162]
gi|319753685|gb|ADV65443.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfurococcus mucosus DSM
2162]
Length = 187
Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 106/167 (63%), Gaps = 4/167 (2%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
+D RG+F++ Y + G+ FVQ N S S G +RGLH+Q P Q KLV + G
Sbjct: 23 QDRRGFFTELYKRTVFLSEGIPYSFVQVNMSES-RKGVVRGLHYQLKPMEQGKLVTVLRG 81
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
RI+D+AVDIR+ SP +G ++ +E+S +N ++IP GFAHGF LE NT V+Y VT YS
Sbjct: 82 RIYDVAVDIRKGSPWFGRYLGVELSEHNKYLLWIPPGFAHGFQALEDNTVVLYMVTKEYS 141
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
EH+ ++++D I I WP L+TI +SEKD+ P L + ++ F Y
Sbjct: 142 PEHERCISYRDPDIGIEWP-LETIF--LSEKDEKCPPLKKAETNFNY 185
>gi|325203205|gb|ADY98658.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
M01-240355]
Length = 179
Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 100/161 (62%), Gaps = 4/161 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V++LK + F D RG+F +T+ K + FVQ+NHS S G +RGLH+Q Q
Sbjct: 11 VKLLKPQVFTDGRGFFMETFRDGWFKTQVCERTFVQENHSKS-GKGVLRGLHYQTE-NTQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L TE+
Sbjct: 69 GKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDTTEL 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK TD+Y E + + W D ++ I WPL P++S KD
Sbjct: 129 TYKCTDYYKPEAEHSLIWNDPTVGIDWPLQGE--PNLSPKD 167
>gi|225376959|ref|ZP_03754180.1| hypothetical protein ROSEINA2194_02601 [Roseburia inulinivorans DSM
16841]
gi|225211280|gb|EEG93634.1| hypothetical protein ROSEINA2194_02601 [Roseburia inulinivorans DSM
16841]
Length = 190
Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 103/169 (60%), Gaps = 5/169 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I +++++ F D+RG+F +TY+ KE G+ FVQDN S S G +RGLHFQ
Sbjct: 12 GIAGLKVIEPTVFGDARGYFMETYNYNDFKEAGIDCEFVQDNQSAS-KKGVLRGLHFQIN 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G +FD+AVD+R S T+G W + +SA N Q +IP GFAHGF+ L
Sbjct: 71 -YPQDKLVRVVNGEVFDVAVDLREGSETFGKWFGVTLSAENKKQFFIPKGFAHGFIVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS---VSEKDQ 167
E YKVTDFY + G+ W+D I + WP+ + + + +S+KD+
Sbjct: 130 YAEFCYKVTDFYHPNDEGGLLWKDPEIGVEWPMPEGMTEADLTLSDKDK 178
>gi|224369621|ref|YP_002603785.1| RfbC2 [Desulfobacterium autotrophicum HRM2]
gi|223692338|gb|ACN15621.1| RfbC2 [Desulfobacterium autotrophicum HRM2]
Length = 182
Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 103/167 (61%), Gaps = 4/167 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ- 59
+NI V +++ + F D RG+F +T+ K+ + FVQDNHS S +RGLH+Q
Sbjct: 6 LNIPDVILMEPQVFGDHRGFFMETFRDDEFKQKVVHTTFVQDNHSKS-SQNILRGLHYQI 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P Q KLV+ +G++FD+AVDIR++SP +G W +SA N +++P GFAHGF L
Sbjct: 65 KQP--QGKLVQVTSGKVFDVAVDIRKSSPFFGKWSGATLSAENKKMLWVPPGFAHGFYVL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E YK TD+Y+ EH+ + W D SI I WP++ P +S+KD
Sbjct: 123 SDEAEFTYKCTDYYAPEHERSILWNDPSIAIDWPIIHGASPILSQKD 169
>gi|116071140|ref|ZP_01468409.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein [Synechococcus
sp. BL107]
gi|116066545|gb|EAU72302.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein [Synechococcus
sp. BL107]
Length = 196
Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 100/166 (60%), Gaps = 4/166 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
++ + F D+RGWF +++S + +G VF QDNHS S G +RGLH+Q P QA
Sbjct: 19 LMTPKCFGDNRGWFYESWSRRSFDNAVGETVVFSQDNHSRSIQ-GVLRGLHYQLAPEPQA 77
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
K+VR G IFD+AVDIR +SPT G W+ E+SA N Q++IP GFAHGF+TL EV
Sbjct: 78 KVVRATLGAIFDVAVDIRSSSPTCGAWIGAELSAENKAQLWIPEGFAHGFLTLSAVAEVQ 137
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLP 170
YK F++ + + W D ++ I WP L+ S+S KD P
Sbjct: 138 YKARGFWNKACERALRWDDPTLAIDWPQGELNGNTISLSPKDAEAP 183
>gi|186684649|ref|YP_001867845.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nostoc punctiforme PCC 73102]
gi|186467101|gb|ACC82902.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nostoc punctiforme PCC 73102]
Length = 181
Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 107/173 (61%), Gaps = 7/173 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ- 59
I V L+ + F D RG+F + Y+ K +E G+ FVQDNHS S +RGLH+Q
Sbjct: 7 KIPEVLQLEPKVFADDRGFFFEAYNDRKFAQETGIVANFVQDNHSCS-KQNVLRGLHYQI 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P Q KLVR + G IFD+AVDIR++S T+G WV+ E+SA N ++IP GFAHGF+ L
Sbjct: 66 QQP--QGKLVRAVVGTIFDVAVDIRKSSTTFGKWVAYELSAENKRLLWIPPGFAHGFLVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
EV+YK TD+Y+ + D + W D + I WPL + P +S KDQ +L
Sbjct: 124 SEVAEVLYKATDYYAPQGDRTILWNDPDLAIDWPL--SASPILSAKDQAGKYL 174
>gi|89094080|ref|ZP_01167023.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Oceanospirillum sp. MED92]
gi|89081555|gb|EAR60784.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Oceanospirillum sp. MED92]
Length = 178
Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 104/171 (60%), Gaps = 7/171 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSK-LLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I ++I++ R F D RG+F +T+ K E G+ FVQDNHS S G +RGLHFQR
Sbjct: 8 IADLKIIEPRVFGDERGFFLETFQEKRYATEAGISLPFVQDNHSRS-SKGVLRGLHFQRT 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR ++G +FD+AVD+R S TYG W +E+SA N Q ++P GFAHGF+ L
Sbjct: 67 K-PQGKLVRVVSGSVFDVAVDLRAGSNTYGNWFGVELSAENKKQFWVPPGFAHGFIVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD-QNLPF 171
+ YK TD+Y ++ + W D + + WP L+ P +SEKD Q LP
Sbjct: 126 RADFEYKCTDYYDPSDEACLKWNDPEVGVVWPDLE---PLLSEKDKQGLPL 173
>gi|159027477|emb|CAO89442.1| rfbC [Microcystis aeruginosa PCC 7806]
Length = 181
Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 104/163 (63%), Gaps = 5/163 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I++ + + D RG+F ++++ K +E G+ FVQDNHS S +RGLH+Q P +
Sbjct: 11 VLIIEPQVYGDDRGFFLESFNQKDFREKTGVNTTFVQDNHSMSLK-NVLRGLHYQIP-HP 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVD R++SPT+G WVS +SA N ++P GFAHGF+ L E
Sbjct: 69 QGKLVRVVNGSVFDVAVDARQSSPTFGQWVSCVLSAENKRIFWVPEGFAHGFIVLSERAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+YK T++Y +++ +AW D + I WPL I P +S KDQ
Sbjct: 129 FLYKTTNYYYPQYEKTIAWNDADLGIDWPL--EIPPILSPKDQ 169
>gi|153813189|ref|ZP_01965857.1| hypothetical protein RUMOBE_03605 [Ruminococcus obeum ATCC 29174]
gi|149830720|gb|EDM85811.1| hypothetical protein RUMOBE_03605 [Ruminococcus obeum ATCC 29174]
Length = 189
Score = 140 bits (354), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 101/166 (60%), Gaps = 2/166 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I ++++ F D RG+F +TY+ K G+ FVQDN S S G +RGLHFQ
Sbjct: 10 HIEGLKVITPAVFGDERGYFMETYNYNDYKAAGIDMEFVQDNQSSS-RKGVLRGLHFQ-I 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR ++G +FD+AVD+R SPTYG W + +SA N Q +IP FAHGF+ L
Sbjct: 68 NYPQDKLVRVVSGEVFDVAVDLREGSPTYGQWYGVLLSAENKKQFFIPKNFAHGFVVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+ E YK TDFY + G+A+ D I + WP+ + + +S+KDQ
Sbjct: 128 SAEFAYKCTDFYHPNDEGGLAYNDPDIGVEWPIPEGMELILSDKDQ 173
>gi|22297999|ref|NP_681246.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermosynechococcus elongatus
BP-1]
gi|22294177|dbj|BAC08008.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermosynechococcus elongatus
BP-1]
Length = 182
Score = 140 bits (354), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 106/176 (60%), Gaps = 5/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSK-LLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +L+ + F D RG+F ++Y+ + + GL FVQDNHS S G +RGLH+Q
Sbjct: 7 LAIADVLLLELQVFRDQRGFFLESYNQRAFMAATGLAVTFVQDNHSAS-QQGVLRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ Q KL+R I G+IFD+AVD+RR+SPT G WV +SA N Q++IP GFAHGF
Sbjct: 66 HQ-HPQGKLIRVIEGKIFDVAVDLRRSSPTCGQWVGTWLSAENFQQLWIPPGFAHGFWVQ 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+V+YK TD+Y + + W D ++ I WP+ P +S KDQ N++
Sbjct: 125 SATAQVLYKTTDYYHPGDEHTLLWNDPTVGIQWPIDSE--PLLSAKDQQGKSFNEL 178
>gi|94264209|ref|ZP_01288005.1| dTDP-4-dehydrorhamnose 3,5-epimerase [delta proteobacterium MLMS-1]
gi|93455384|gb|EAT05585.1| dTDP-4-dehydrorhamnose 3,5-epimerase [delta proteobacterium MLMS-1]
Length = 188
Score = 140 bits (354), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 110/167 (65%), Gaps = 3/167 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+L+ + + D RG+F +T+ LL E LG + FVQDN S S G +RGLH+Q PP+AQ+
Sbjct: 13 LLQPQVWGDERGYFMETFRLDLLTEVLGYRLDFVQDNESKSVR-GVLRGLHYQLPPFAQS 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR + G ++D+AVDIR +SPT+G V LE+S N Q++IP GFAH F+ L +
Sbjct: 72 KLVRVVEGVVWDVAVDIRPSSPTFGRHVGLELSGANKRQLFIPRGFAHAFVVLSDHAFFQ 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
YKV ++Y+ E D G++ +D ++ I WPL L +S+KD +LP L
Sbjct: 132 YKVDNYYAPECDRGISCRDPALAIDWPLPFEQL-RLSDKDSHLPLLQ 177
>gi|257456603|ref|ZP_05621798.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Treponema vincentii ATCC
35580]
gi|257446023|gb|EEV21071.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Treponema vincentii ATCC
35580]
Length = 178
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 100/163 (61%), Gaps = 5/163 (3%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKL 68
++ + F D+RG+F +++S + G+ FVQDN S S G +RGLHFQ+ Y+Q KL
Sbjct: 16 IQPKVFSDNRGYFFESWSQRDFAAAGITYTFVQDNQSKS-SKGVLRGLHFQKE-YSQGKL 73
Query: 69 VRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128
VR ++G +FD+AVDIRR S T+G W + +SA Q +I GFAHGF+ L YK
Sbjct: 74 VRVLSGEVFDVAVDIRRGSATHGKWYGVVLSAERKNQFFISPGFAHGFLVLSDEAVFAYK 133
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSV-SEKDQNLP 170
TDFY E + G+ W D +I I WP LD +P + SEKD P
Sbjct: 134 CTDFYHPEDEGGIMWNDPAIGIEWPKLD--VPYIFSEKDTKYP 174
>gi|209696413|ref|YP_002264344.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Aliivibrio
salmonicida LFI1238]
gi|208010367|emb|CAQ80705.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Aliivibrio
salmonicida LFI1238]
Length = 184
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 106/168 (63%), Gaps = 6/168 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ F D RG+F +T++ +EL G FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVKIIEPSVFGDERGFFMETWNQAKFEELVTGKPTRFVQDNHSKS-KKGILRGLHYQT 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR ++G +FD+AVDIR+ SPT+G WV +SA N Q+++P GFAHGF
Sbjct: 67 EN-TQGKLVRVVSGEVFDVAVDIRKGSPTFGQWVGEYLSAENKRQLWVPKGFAHGFYVTS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK TD+Y+ + + + W D+S+ I WPL + +P +SEKD N
Sbjct: 126 DEAEFVYKCTDYYNPKVEISLFWADESLAINWPL--SGIPMLSEKDIN 171
>gi|227824676|ref|ZP_03989508.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidaminococcus sp. D21]
gi|226905175|gb|EEH91093.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidaminococcus sp. D21]
Length = 203
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 96/160 (60%), Gaps = 2/160 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ + ++ + D RG+F +TY+ ++E G+ FVQDN S S G +RGLHFQ+
Sbjct: 12 KIDGLCVITPTQHGDERGYFMETYNEHDMEEAGIHVKFVQDNQSMSTK-GVLRGLHFQKH 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR I GR+FD+AVD+R S TYG W +E++ N Q IP GFAHGF+ L
Sbjct: 71 -FPQCKLVRVIRGRVFDVAVDLRAQSKTYGKWYGVELTEENKKQFLIPEGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS 161
E YKV DF+ + + G+AW D I I WP + + P
Sbjct: 130 VAEFCYKVNDFWHPDDEGGLAWNDPEIGIDWPEVGGVYPG 169
>gi|300704901|ref|YP_003746504.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Ralstonia solanacearum
CFBP2957]
gi|299072565|emb|CBJ43915.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia solanacearum
CFBP2957]
Length = 183
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++++++ ++ G++ FVQDNHS S G +RGLH+Q
Sbjct: 10 IPEVLILEPKVFGDDRGFFFESFNARTFEQATGVKRTFVQDNHSRS-ARGVLRGLHYQ-I 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G +FD+AVD+R++SPT+G WV + +SA N Q+++P GFAHGF+
Sbjct: 68 QHPQGKLVRVTVGEVFDVAVDLRKSSPTFGKWVGVTLSAENKRQLWVPEGFAHGFVVTSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD++ EH+ + W D + I WP T P ++ KD L + D
Sbjct: 128 YAEFLYKTTDYWYAEHERSIVWNDPDLGIEWPAQGT--PILAAKDAAGARLARAD 180
>gi|255536063|ref|YP_003096434.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Flavobacteriaceae bacterium
3519-10]
gi|255342259|gb|ACU08372.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Flavobacteriaceae bacterium
3519-10]
Length = 181
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 102/160 (63%), Gaps = 3/160 (1%)
Query: 16 DSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D RG+F + ++ K ++L GL FVQDN S S G +RG+H Q+ +AQAKLV C+ G
Sbjct: 21 DERGYFYEKFNEKKWEDLTGLNGHFVQDNISKS-TYGVLRGIHLQKGDHAQAKLVSCLEG 79
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
++FD+AVD+R +SPT+G W +E+S N LQ+Y+P GF HGF L YK +FY
Sbjct: 80 KVFDVAVDLRESSPTFGQWFGVELSPENKLQLYVPRGFGHGFSVLSETAVFSYKCDNFYH 139
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E + V W DK ++I W L + + +SEKD++LP ++
Sbjct: 140 KESEGSVIWNDKDLNIDWKLPENDI-LLSEKDRHLPTFSE 178
>gi|121633959|ref|YP_974204.1| dTDP-D-glucose 4,6-dehydratase [Neisseria meningitidis FAM18]
gi|120865665|emb|CAM09389.1| dTDP-D-glucose 4,6-dehydratase [Neisseria meningitidis FAM18]
Length = 184
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 103/164 (62%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKS-GKGVLRGLHYQTE- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 71 NTQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y+ E + + W D ++ I WPL P++S KD
Sbjct: 131 AEFVYKCTDYYNPEAEHSLIWNDPTVGIDWPL--QTAPNLSPKD 172
>gi|221214408|ref|ZP_03587379.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans
CGD1]
gi|221165665|gb|EED98140.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans
CGD1]
Length = 183
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 100/150 (66%), Gaps = 3/150 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ + F D+RG+F ++++ + E V FVQDNHS S G +RGLH+Q +A
Sbjct: 13 VKIIEPKVFGDARGYFYESFNGREFAEQVEPGVEFVQDNHSRSAK-GVLRGLHYQIQ-HA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVDIRR+SP +G WV + +SA+N Q+++P GFAHGF+ L +
Sbjct: 71 QGKLVRVVEGEVFDVAVDIRRSSPNFGKWVGVTLSADNHRQLWVPPGFAHGFVVLSEAAQ 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
+YK TD++ EH+ + W D I I WP+
Sbjct: 131 FLYKTTDYWYPEHERSILWNDPDIRIEWPI 160
>gi|325203189|gb|ADY98642.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
M01-240355]
Length = 185
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 99/161 (61%), Gaps = 4/161 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V++LK + F D RG+F +T+ K + FVQ+NHS S G +RGLH+Q Q
Sbjct: 11 VKLLKPQVFTDGRGFFMETFRDGWFKTQVCERTFVQENHSKS-GKGVLRGLHYQTE-NTQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L TE+
Sbjct: 69 GKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDTTEL 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK TD+Y E + + W D ++ I WPL P +S KD
Sbjct: 129 TYKCTDYYKPEAEHSLIWNDPTVGIGWPL--QTAPLLSPKD 167
>gi|254805864|ref|YP_003084085.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
alpha14]
gi|254669406|emb|CBA08595.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
alpha14]
gi|254671743|emb|CBA09562.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
alpha153]
Length = 185
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 96/161 (59%), Gaps = 4/161 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+ILK + F D RG+F +T+ KE FVQ+NHS S G +RGLH+Q Q
Sbjct: 11 VKILKPQVFTDGRGFFMETFRDGWFKENIADRTFVQENHSKSGK-GVLRGLHYQTE-NTQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L EV
Sbjct: 69 GKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFCVLGDAAEV 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK TD+Y E + + W D ++ I WPL P +S KD
Sbjct: 129 VYKCTDYYKPEAEQVLIWNDPTVGIGWPL--QTAPLLSPKD 167
>gi|207728136|ref|YP_002256530.1| dtdp-4-dehydrorhamnose 3,5-epimerase protein [Ralstonia
solanacearum MolK2]
gi|206591381|emb|CAQ56993.1| dtdp-4-dehydrorhamnose 3,5-epimerase protein [Ralstonia
solanacearum MolK2]
Length = 183
Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 105/165 (63%), Gaps = 5/165 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++++++ ++ G++ FVQDNHS S G +RGLH+Q
Sbjct: 10 IPEVLILEPKVFGDDRGFFFESFNARTFEQATGVKRTFVQDNHSRS-ARGVLRGLHYQ-I 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G +FD+AVD+R+ SPT+G WV + +SA N Q+++P GFAHGF+
Sbjct: 68 QHPQGKLVRVTVGEVFDVAVDLRKRSPTFGKWVGVTLSAENKRQLWVPEGFAHGFVVTSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD++ EH+ + W D + I WP+ T P ++ KD
Sbjct: 128 YAEFLYKTTDYWYAEHERSIVWNDPDLGIEWPVQGT--PILAAKD 170
>gi|134294919|ref|YP_001118654.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia vietnamiensis
G4]
gi|134138076|gb|ABO53819.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia vietnamiensis
G4]
Length = 183
Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 101/150 (67%), Gaps = 3/150 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V++++ + F D+RG+F ++++++ E + FVQDNHS S G +RGLH+Q +
Sbjct: 13 VKLIEPKVFGDARGYFYESFNAREFAEHVAPGIEFVQDNHSRSAK-GVLRGLHYQIE-HT 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVD+RR+SP +G WV + +SA+N Q+++P GFAHGF+ + + +
Sbjct: 71 QGKLVRVVEGEVFDVAVDVRRSSPNFGKWVGVSLSADNHRQLWVPPGFAHGFLVVSESAQ 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
+YK TD++ EH+ + W D I I WPL
Sbjct: 131 FLYKTTDYWFPEHERSIVWNDPDIGIAWPL 160
>gi|261856083|ref|YP_003263366.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Halothiobacillus neapolitanus
c2]
gi|261836552|gb|ACX96319.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Halothiobacillus neapolitanus
c2]
Length = 184
Score = 140 bits (353), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 97/159 (61%), Gaps = 5/159 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+L+ + F D RG+F +T++++ +E GL++ FVQDN S S G +RGLHFQ P Q K
Sbjct: 13 LLEPKVFGDERGFFMETWNAQRYREFGLEENFVQDNLSRS-RRGVLRGLHFQEP-NPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G +FD+AVDIRR SPT+G W +SA N LQ YIP GFAHGF Y
Sbjct: 71 LVSVLDGEVFDVAVDIRRGSPTFGQWEGYTLSAQNKLQFYIPPGFAHGFCVTSDTALFAY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
K T+ Y ++ +AW D ++I WP+ P +S KD
Sbjct: 131 KCTELYQPANEGAIAWDDPDLNIPWPIDQ---PELSAKD 166
>gi|212691379|ref|ZP_03299507.1| hypothetical protein BACDOR_00871 [Bacteroides dorei DSM 17855]
gi|212665989|gb|EEB26561.1| hypothetical protein BACDOR_00871 [Bacteroides dorei DSM 17855]
Length = 189
Score = 140 bits (353), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 114/181 (62%), Gaps = 4/181 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V IL+ R F D+RG+F +++S + +E + FVQDN SFS G +RGLHFQ+PP
Sbjct: 8 IDGVFILEPRIFNDARGYFFESFSEREFEEKVCRTTFVQDNESFS-TYGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q+KLVR I G + D+AVDIR+ SPT+G V++E++ N Q +IP GFAHGF L
Sbjct: 67 FTQSKLVRVIKGAVLDVAVDIRKGSPTFGKHVAVELTGENHRQFFIPRGFAHGFAVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +Y+ + + G+AW D + I W L D ++ +S+KD+ P L + F++
Sbjct: 127 VLFQYKCDHYYAPQSEGGIAWDDPDLGIDWRLPADKVI--LSDKDKKHPRLKDYQTDFDF 184
Query: 182 D 182
+
Sbjct: 185 N 185
>gi|29726024|gb|AAO88950.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]
Length = 183
Score = 140 bits (353), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 106/173 (61%), Gaps = 5/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ + F D RG+F +T+ + +E G+ FVQDN S S G +RGLHFQ+
Sbjct: 8 IQDLLIIEPKVFGDDRGFFYETFQKQRYREAGIDAEFVQDNRSRS-SKGVLRGLHFQKTK 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+Q KLV G +FD+AVD+R NSPT+G + ++ ++ N LQ Y+P GFAHGF L
Sbjct: 67 -SQGKLVTVTDGEVFDVAVDLRPNSPTFGQYETIILTGKNKLQFYVPPGFAHGFCVLSDT 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK TD+Y +SG+ W D S++I WP+ + P +SEKD+ P L I
Sbjct: 126 ADFQYKCTDYYDPSDESGLLWNDASLNIQWPIEN---PLLSEKDKLQPELAAI 175
>gi|127514631|ref|YP_001095828.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella loihica PV-4]
gi|126639926|gb|ABO25569.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella loihica PV-4]
Length = 182
Score = 140 bits (353), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 103/167 (61%), Gaps = 4/167 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ-R 60
+I V++L+ + F D RG F +T+ + KE + FVQ+N S S GT+RGLH+Q R
Sbjct: 7 SIPDVKLLEPQVFGDERGCFFETFRQQWFKEHLMDLDFVQENQSHSLQ-GTLRGLHYQLR 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KL+R ++G IFD+ VD+RR SP++G W +SA+N Q+++P GFAHGF +
Sbjct: 66 QP--QGKLIRVVSGEIFDVCVDLRRTSPSFGQWTGHHLSADNKHQLWVPPGFAHGFYVVS 123
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
YK TD+Y+ + + W D ++ I WPLL T P +S KD+
Sbjct: 124 PEAHCFYKCTDYYAPNDEHSIRWDDDTLAIDWPLLSTQSPLLSPKDK 170
>gi|116327946|ref|YP_797666.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116330828|ref|YP_800546.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|4234801|gb|AAD12969.1| RmlC [Leptospira borgpetersenii]
gi|116120690|gb|ABJ78733.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116124517|gb|ABJ75788.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 186
Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 109/176 (61%), Gaps = 4/176 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
++K + F D RG+F +T+ + L + + F QDNHS S G +RG+H Q PPY Q K
Sbjct: 13 LIKPKVFGDERGFFFETFKTSLFESESIPTHFSQDNHSRS-SRGVLRGMHLQVPPYEQGK 71
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR + G++ D+ VD+R SP YG W S+E+S N ++P GFAHGF+TLE T+ +Y
Sbjct: 72 LVRVVRGKVIDVVVDVRIGSPNYGKWFSVELSEENKNIFWVPPGFAHGFLTLEDKTDFLY 131
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWP--LLDTILPSVSEKDQNLPFLNQIDSPFEY 181
KVT YS +++ G+ W D ++ I W L D+ VS++DQ PFL SPF Y
Sbjct: 132 KVTKEYSPQNEVGIRWDDPTLGIPWKTWLSDSEF-IVSQRDQETPFLASFKSPFVY 186
>gi|319953124|ref|YP_004164391.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Cellulophaga algicola DSM
14237]
gi|319421784|gb|ADV48893.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cellulophaga algicola DSM
14237]
Length = 181
Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 103/167 (61%), Gaps = 3/167 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+++ +KFED RG+F ++++ + EL + FVQDN S+S G IR +H+Q+ YAQA
Sbjct: 13 VIEPKKFEDDRGYFFESFNEEKFNELTETETKFVQDNQSYS-TRGVIRAIHYQKGIYAQA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR + G + DIAVD+RR+S T+G ++E+S N Q+YIP GF HGF L
Sbjct: 72 KLVRVLKGTVLDIAVDLRRDSSTFGKHYAIELSEKNNKQLYIPRGFGHGFSVLSDTAVFF 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
YK +FY+ + G+ + D+ ++I W + D L VS KD LP N
Sbjct: 132 YKCDNFYNAASEGGIIYNDEELNIDWKVEDKYLK-VSSKDLILPKFN 177
>gi|255011088|ref|ZP_05283214.1| putative LPS biosynthesis related dTDP-4-dehydrorhamnose
3,5-epimerase [Bacteroides fragilis 3_1_12]
gi|313148896|ref|ZP_07811089.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides fragilis 3_1_12]
gi|313137663|gb|EFR55023.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides fragilis 3_1_12]
Length = 180
Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 108/175 (61%), Gaps = 4/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V IL+ R F+D RG+F ++++ + +E + FVQDN S S G +RGLHFQ+ P
Sbjct: 8 IDGVVILEPRIFKDDRGYFFESFNQREFEEKVCKTTFVQDNESKS-SYGVLRGLHFQQAP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ+KLVR + G + D+AVDIR+ SPT+G V++E++ +N Q +IP G AHGF L
Sbjct: 67 FAQSKLVRVVKGAVLDVAVDIRKGSPTFGQHVAVELTEDNHRQFFIPRGLAHGFSVLSEA 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQID 176
YK +FY+ + VAW D + I W + D ++ +SEKD P L ++
Sbjct: 127 VVFQYKCDNFYAPHSEGAVAWDDPDLGIDWRIPADRVI--LSEKDSRHPRLKDLN 179
>gi|313496629|gb|ADR57995.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida BIRD-1]
Length = 181
Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 110/173 (63%), Gaps = 10/173 (5%)
Query: 1 MNINP-----VRILKTRKFEDSRGWFSQTYSSK-LLKELGLQDVFVQDNHSFSFDCGTIR 54
MNI P V I++ + F DSRG+F + ++++ ++ G+ FVQDNHS S G +R
Sbjct: 1 MNIIPTAIPEVLIIEPKVFADSRGFFFEAFNAREFSQQTGVNVAFVQDNHSRSIK-GVLR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
GLH+Q Q KLVR + G I DIAVD+R++SPT+G WV++ +SA+N Q++IP GFAH
Sbjct: 60 GLHYQVA-NTQGKLVRVVHGEIRDIAVDVRKSSPTFGKWVAVHLSADNHRQLWIPPGFAH 118
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
GF + + E +YK TD+Y+ D + W D +DI W L P +S+KD+
Sbjct: 119 GFAVMSESAEFLYKTTDYYNPGADRCIRWDDPQLDIDWGLQQP--PLLSDKDK 169
>gi|28170140|gb|AAM34819.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Vibrio vulnificus]
Length = 183
Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 105/168 (62%), Gaps = 6/168 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
I V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 KIPDVKIIEPTVFGDERGFFMETWNQKRFEELVTGKPTKFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SPT+G WV +S+ N Q++IP GFAHGF
Sbjct: 66 TEN-TQGKLVRVVSGEVFDVAVDIRKDSPTFGQWVGEYLSSENKRQLWIPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E +YK TD+Y+ + + W D ++I WP I P++S+KD+
Sbjct: 125 SEEAEFVYKCTDYYNPTAEVSLRWDDSYVNIIWPC--KITPTLSDKDR 170
>gi|17545404|ref|NP_518806.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia solanacearum
GMI1000]
gi|17427696|emb|CAD14215.1| probable dtdp-4-dehydrorhamnose 3,5-epimerase protein [Ralstonia
solanacearum GMI1000]
Length = 183
Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 106/165 (64%), Gaps = 5/165 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++++++ +++ G++ FVQDNHS S +RGLH+Q
Sbjct: 10 IPEVLILEPKVFGDDRGFFFESFNARAFEQVTGVKRTFVQDNHSRS-ARNVLRGLHYQ-I 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G +FD+AVD+R+ SPT+G WV + +SA N Q+++P GFAHGF+
Sbjct: 68 QHPQGKLVRVTVGEVFDVAVDLRKRSPTFGKWVGVTLSAENKRQLWVPEGFAHGFVVTSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ E +YK TD++ EH+ + W D + I WP+ T P ++ KD
Sbjct: 128 HAEFLYKTTDYWYAEHERSIVWNDPDLGIEWPVQGT--PVLAAKD 170
>gi|218507928|ref|ZP_03505806.1| dTDP-4-dehydrorhamnose 3,5-epimerase protein [Rhizobium etli Brasil
5]
Length = 136
Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 64/118 (54%), Positives = 82/118 (69%)
Query: 13 KFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
+F D RG+FS+ + +E FVQDN S S GT+RGLHFQ P+AQ KLVRC+
Sbjct: 18 RFGDHRGYFSEVFKDAWFRENVADVTFVQDNESLSAQAGTVRGLHFQISPFAQGKLVRCL 77
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
AGRI D+ VDIR SP+YG W+S E+S + G Q++IP GFAHGF T+E N+ + YKVT
Sbjct: 78 AGRIMDVVVDIRVGSPSYGQWLSQELSPDTGKQLWIPAGFAHGFATIEPNSVISYKVT 135
>gi|220919523|ref|YP_002494827.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anaeromyxobacter dehalogenans
2CP-1]
gi|219957377|gb|ACL67761.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anaeromyxobacter dehalogenans
2CP-1]
Length = 188
Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 99/160 (61%), Gaps = 4/160 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+++ R F D+RG+F ++++ K +G FVQDNHS S G +RGLH+Q P Q
Sbjct: 13 VVEPRVFGDARGYFFESFNQKAFDAAVGRHVEFVQDNHSLS-ARGVLRGLHYQLP-NPQG 70
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR G +FD+AVD+RR SPT+G W +SA N Q++IP GFAHGF+ E +
Sbjct: 71 KLVRVTRGEVFDVAVDLRRGSPTFGRWAGEILSAENKRQLWIPEGFAHGFLVRSDEAEFV 130
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK+TD++ EH+ + W D ++ I WP + P VS KD
Sbjct: 131 YKITDYWHPEHEHCIRWDDPALGIDWP-TGGVRPLVSAKD 169
>gi|198284962|ref|YP_002221283.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218666255|ref|YP_002427647.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198249483|gb|ACH85076.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218518468|gb|ACK79054.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 182
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 104/168 (61%), Gaps = 6/168 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ- 59
++I V ++ + F D RG+F ++++ + GL FVQDNHS S G +RGLH+Q
Sbjct: 6 LSIPEVLLIAPKVFGDVRGFFMESWNRRAFAAAGLDLDFVQDNHSRS-QQGVLRGLHYQI 64
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
+P Q KLVR ++G +FD+AVD+RR+SP +G W +SA N +++P GFAHGF
Sbjct: 65 HQP---QGKLVRVVSGAVFDVAVDLRRSSPHFGRWAGATLSAENQQMLWVPPGFAHGFYV 121
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
L + + +YK T+FY+ E + V W D I I WPL+D P ++ KD
Sbjct: 122 LSESADFLYKTTEFYAPEAERCVIWNDPDIAIDWPLVDGKPPLLATKD 169
>gi|307720179|ref|YP_003891319.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfurimonas autotrophica DSM
16294]
gi|306978272|gb|ADN08307.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfurimonas autotrophica DSM
16294]
Length = 192
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 110/167 (65%), Gaps = 3/167 (1%)
Query: 16 DSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D RG+F +T+ + L+E LG + F QDN S S G +RGLH+Q P AQ KLVR I G
Sbjct: 21 DERGYFVETFRADKLEEFLGYKINFCQDNESKS-SRGVLRGLHYQLHPAAQTKLVRVIQG 79
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
R+ D+AVDIR+ S T+G V++E++A N Q+ +P GFAHGF+ LE +T YKV ++YS
Sbjct: 80 RVLDVAVDIRKESLTFGKHVAVELNAENKHQLLVPRGFAHGFVVLEDDTIFAYKVDNYYS 139
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
E+D G+ + D++++I W + + L +S KD+ P L + + F+Y
Sbjct: 140 PENDRGILFSDEALNIDWTIPYSEL-KLSAKDKVQPKLTETNDIFDY 185
>gi|261868367|ref|YP_003256289.1| hypothetical protein D11S_1707 [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261413699|gb|ACX83070.1| hypothetical protein D11S_1707 [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 180
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 102/165 (61%), Gaps = 4/165 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++L+ + F D RG+F +T+ + +E FVQ+NHS S G +RGLH+Q
Sbjct: 7 KIPDVKLLELQVFGDERGFFMETFRDEWFRENVADHTFVQENHSKSIK-GVLRGLHYQTE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR ++G +FD+AVD+R+NSPT G WV +SA N Q+++P GFAHGF L
Sbjct: 66 N-TQGKLVRVVSGAVFDVAVDMRKNSPTLGQWVGEILSAENKRQLWVPEGFAHGFYVLTD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E YK TD+Y+ + + + W D+++ I WPL PS+S KD
Sbjct: 125 EAEFTYKCTDYYNPKAEHSLIWNDETVGIEWPLEGE--PSLSAKD 167
>gi|331004824|ref|ZP_08328242.1| dTDP-4-dehydrorhamnose 3,5-epimerase [gamma proteobacterium
IMCC1989]
gi|330421355|gb|EGG95603.1| dTDP-4-dehydrorhamnose 3,5-epimerase [gamma proteobacterium
IMCC1989]
Length = 180
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 105/173 (60%), Gaps = 6/173 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V +++ F D RG+F +T+ K +E LG FVQDNHS S G +RGLHFQ+
Sbjct: 11 VLVIEPAVFGDERGFFLETFQLKRYQEHLGENIQFVQDNHSRS-PRGVLRGLHFQKTK-P 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G ++D+AVDI +S TYG + + +SA N Q++IP G+AHGF+ L + +
Sbjct: 69 QGKLVRVVTGEVYDVAVDINPHSSTYGQYEGVVLSAKNKKQLWIPPGYAHGFLVLSDSAD 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
YK TD+Y + GV W D I+I WPL D L S+KD LPFL I S
Sbjct: 129 FEYKCTDYYDPADEGGVMWNDPEINIPWPLTDVQL---SDKDTMLPFLKDIKS 178
>gi|159154696|gb|ABW93681.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis]
gi|159154713|gb|ABW93697.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis]
Length = 185
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 98/161 (60%), Gaps = 4/161 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+ILK + F+D RG+F +T+ KE FVQ+NHS S G +RGLH+Q Q
Sbjct: 11 VKILKPQVFKDGRGFFMETFRDGWFKENIADCSFVQENHSKSGK-GVLRGLHYQTE-NTQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G +FD+AVD+R SPT+G WV +SA N Q++IP GFAHGF L EV
Sbjct: 69 GKLVRVVVGEVFDVAVDMREGSPTFGKWVGEILSAQNQCQLWIPEGFAHGFCVLGDAAEV 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK TD+Y E + + W D ++ I WPL P +S KD
Sbjct: 129 VYKCTDYYKPEAEQVLIWNDPTVGIGWPL--QTAPLLSPKD 167
>gi|20092576|ref|NP_618651.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanosarcina acetivorans
C2A]
gi|19917852|gb|AAM07131.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanosarcina acetivorans
C2A]
Length = 183
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 108/178 (60%), Gaps = 3/178 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + IL+ F D RG+F ++Y+ KL +G FVQDN S S G IRGLH+Q
Sbjct: 8 IKDLFILEPDVFGDDRGYFFESYNKMKLDALIGKMYHFVQDNESKS-SYGVIRGLHYQLA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P++Q KLVR + G+++D+AVD+R++SPT+G W +E+S N Q IP GFAHGF L
Sbjct: 67 PFSQTKLVRVLQGKVYDVAVDLRKDSPTFGKWFGVELSGENKRQFIIPKGFAHGFSVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+YK ++Y E ++G+A+ D S++I W + D + VS KD LP + + F
Sbjct: 127 TAVFVYKCDEYYHPETEAGIAYNDPSLNIDWKVRDEDI-KVSPKDGLLPRFEKAEINF 183
>gi|261391624|emb|CAX49066.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase; dTDP-L-rhamnose synthetase) [Neisseria
meningitidis 8013]
Length = 179
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 99/161 (61%), Gaps = 4/161 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+ILK + F+D RG+F +T+ KE FVQ+NHS S G +RGLH+Q Q
Sbjct: 11 VKILKPQVFKDGRGFFMETFRDGWFKENIADCSFVQENHSKS-GKGVLRGLHYQTE-NTQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L EV
Sbjct: 69 GKLVRVVVGEVFDVAVDMREGSPTFGKWTGATLSAQNQYQLWIPEGFAHGFYVLGDAAEV 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK TD+Y+ + + + W D ++ I WPL P++S KD
Sbjct: 129 VYKCTDYYNPKAEHSLIWNDPTVGIDWPLQGE--PNLSPKD 167
>gi|121633943|ref|YP_974188.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis FAM18]
gi|120865649|emb|CAM09369.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis FAM18]
Length = 190
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 103/164 (62%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKS-GKGVLRGLHYQ-TE 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 71 NTQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y+ E + + W D ++ I WPL P++S KD
Sbjct: 131 AEFVYKCTDYYNPEAEHSLIWNDPTVGIDWPLQGE--PNLSPKD 172
>gi|119503620|ref|ZP_01625703.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [marine gamma
proteobacterium HTCC2080]
gi|119460682|gb|EAW41774.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [marine gamma
proteobacterium HTCC2080]
Length = 183
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 103/164 (62%), Gaps = 2/164 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V ++K + F D RG+F ++++ E G+ FVQDNHS S G +RGLHFQ
Sbjct: 8 LSGVMLIKPKVFGDDRGFFLESWNRCAFAEAGIPSDFVQDNHSRSRQ-GILRGLHFQTQ- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR I+G ++D+ VD+R NS T+G W +SA N Q+++P+GFAHGF + +
Sbjct: 66 QPQGKLVRVISGSVYDVTVDLRTNSATFGQWFGCLLSAENKTQLWVPSGFAHGFYVVSES 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ +YK TD+Y + + +AW D I+I WPL++ P +S KD
Sbjct: 126 ADFLYKCTDYYHPQSEVSLAWNDAHINIQWPLVNGENPELSAKD 169
>gi|119898165|ref|YP_933378.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Azoarcus sp. BH72]
gi|119670578|emb|CAL94491.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Azoarcus sp. BH72]
Length = 181
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 109/175 (62%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +L+ + F DSRG+F +++++ + GL VFVQDNHS S G +RGLH+Q
Sbjct: 8 IPEVLMLEPQVFGDSRGFFLESFNANRFETATGLPPVFVQDNHSRS-SRGVLRGLHYQLS 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR GR+FD+AVD+RR+S T+ WV E+S N Q++IP GFAHGF+ L
Sbjct: 67 -QPQGKLVRVARGRVFDVAVDLRRSSATFAQWVGTELSDENQRQMWIPPGFAHGFVVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD+Y+ E + V W D ++ I WP+ + P +S KDQ+ L + +
Sbjct: 126 TADFLYKTTDYYAPEAERCVLWNDPALGIEWPISEP--PLLSAKDQSGKLLAEAE 178
>gi|78065445|ref|YP_368214.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. 383]
gi|77966190|gb|ABB07570.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. 383]
Length = 183
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 101/150 (67%), Gaps = 3/150 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V++++ + F D+RG+F ++++++ E + FVQDNHS S G +RGLH+Q +
Sbjct: 13 VKLIEPKVFGDARGYFYESFNAREFAEHVAPGIEFVQDNHSRSAK-GVLRGLHYQIE-HT 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVD+RR+SP +G WV + +SA+N Q+++P GFAHGF+ + + +
Sbjct: 71 QGKLVRVVEGEVFDVAVDVRRSSPNFGKWVGVTLSADNHRQLWVPPGFAHGFLVVSESAQ 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
+YK TD++ EH+ + W D I I WPL
Sbjct: 131 FLYKTTDYWFPEHERSIVWNDPDIGIVWPL 160
>gi|254673889|emb|CBA09672.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
alpha275]
Length = 180
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 99/161 (61%), Gaps = 4/161 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+ILK + F+D RG+F +T+ KE FVQ+NHS S G +RGLH+Q Q
Sbjct: 11 VKILKPQVFKDGRGFFMETFRDGWFKENIADCSFVQENHSKS-GKGVLRGLHYQTE-NTQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L EV
Sbjct: 69 GKLVRVVVGEVFDVAVDMREGSPTFGKWTGATLSAQNQYQLWIPEGFAHGFYVLGDAAEV 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK TD+Y+ + + + W D ++ I WPL P++S KD
Sbjct: 129 VYKCTDYYNPKAEHSLIWNDPTVGIDWPLQGE--PNLSPKD 167
>gi|121606377|ref|YP_983706.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Polaromonas naphthalenivorans
CJ2]
gi|120595346|gb|ABM38785.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Polaromonas naphthalenivorans
CJ2]
Length = 181
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 106/168 (63%), Gaps = 7/168 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ-R 60
I V I++ R F D+RG+F ++++ K + G FVQDNHS S G +RGLH+Q +
Sbjct: 8 IADVLIIEPRVFGDARGFFYESFNQKAFNDATGTDHQFVQDNHSRSVK-GVMRGLHYQVQ 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLVR G +FD+AVDIR++SPT+G WV +E+S +N Q+++P GFAHGF+
Sbjct: 67 QP--QGKLVRVARGAVFDVAVDIRKSSPTFGKWVGVELSEDNHRQLWVPPGFAHGFVVTS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL--DTILPSVSEKD 166
+ + +YK TD+Y+ E + +AW D I I WPL P +S KD
Sbjct: 125 ESADFLYKTTDYYAPEFERCIAWNDSVIGIQWPLAPHGIAQPVLSAKD 172
>gi|306820759|ref|ZP_07454385.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551208|gb|EFM39173.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 185
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 98/165 (59%), Gaps = 2/165 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + +++ F D+RG+F +TY+ K G+ FVQDN S S G +RGLHFQ
Sbjct: 11 IKGMYVIEPEIFGDNRGYFMETYNENDFKNAGIDVEFVQDNESSS-KKGVLRGLHFQTKN 69
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR ++G +FD+ VD+R+NSPTYG W +S N Q+YIP GFAHGF+ L
Sbjct: 70 -VQGKLVRVLSGEVFDVGVDLRKNSPTYGKWYGEILSCENKKQLYIPEGFAHGFVVLSDM 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
YK T+FY + G+AW D I I W + D + +S+KD+
Sbjct: 129 ATFAYKCTNFYDPSSEGGIAWNDPDIAIDWHISDDMEIILSDKDK 173
>gi|261391607|emb|CAX49045.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase; dTDP-L-rhamnose synthetase) [Neisseria
meningitidis 8013]
Length = 185
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 99/161 (61%), Gaps = 4/161 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+ILK + F+D RG+F +T+ KE FVQ+NHS S G +RGLH+Q Q
Sbjct: 11 VKILKPQVFKDGRGFFMETFRDGWFKENIADCSFVQENHSKS-GKGVLRGLHYQTE-NTQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L EV
Sbjct: 69 GKLVRVVVGEVFDVAVDMREGSPTFGKWTGATLSAQNQYQLWIPEGFAHGFYVLGDAAEV 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK TD+Y+ + + + W D ++ I WPL P++S KD
Sbjct: 129 VYKCTDYYNPKAEHSLIWNDPTVGIDWPLQGE--PNLSPKD 167
>gi|194099848|ref|YP_002002985.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae
NCCP11945]
gi|240017601|ref|ZP_04724141.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae FA6140]
gi|240081745|ref|ZP_04726288.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae FA19]
gi|240114021|ref|ZP_04728511.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae MS11]
gi|240116757|ref|ZP_04730819.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae PID18]
gi|240118978|ref|ZP_04733040.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae PID1]
gi|240124514|ref|ZP_04737470.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae PID332]
gi|240129194|ref|ZP_04741855.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae
SK-93-1035]
gi|254494779|ref|ZP_05107950.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae 1291]
gi|260439482|ref|ZP_05793298.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae DGI2]
gi|268597843|ref|ZP_06132010.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria gonorrhoeae FA19]
gi|268600087|ref|ZP_06134254.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae MS11]
gi|268602428|ref|ZP_06136595.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae PID18]
gi|268604692|ref|ZP_06138859.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae PID1]
gi|268683148|ref|ZP_06150010.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae PID332]
gi|268687577|ref|ZP_06154439.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae
SK-93-1035]
gi|291042716|ref|ZP_06568457.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae DGI2]
gi|293398258|ref|ZP_06642463.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria gonorrhoeae F62]
gi|193935138|gb|ACF30962.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae
NCCP11945]
gi|226513819|gb|EEH63164.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae 1291]
gi|268551631|gb|EEZ46650.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria gonorrhoeae FA19]
gi|268584218|gb|EEZ48894.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae MS11]
gi|268586559|gb|EEZ51235.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae PID18]
gi|268588823|gb|EEZ53499.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae PID1]
gi|268623432|gb|EEZ55832.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae PID332]
gi|268627861|gb|EEZ60261.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae
SK-93-1035]
gi|291013150|gb|EFE05116.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae DGI2]
gi|291611521|gb|EFF40591.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria gonorrhoeae F62]
Length = 185
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 97/161 (60%), Gaps = 4/161 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V++LK + F D RG+F +T+ KE FVQ+NHS S G +RGLH+Q Q
Sbjct: 11 VKLLKPQVFTDGRGFFMETFRDGWFKENIADRTFVQENHSNS-SKGVLRGLHYQTE-NTQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L EV
Sbjct: 69 GKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNRYQLWIPEGFAHGFCVLGDAAEV 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK TD+Y+ E + + W D +I I WPL P +S KD
Sbjct: 129 VYKCTDYYNPETEQVLIWNDPAIGIGWPL--QTAPLLSPKD 167
>gi|325268092|ref|ZP_08134738.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Kingella denitrificans ATCC
33394]
gi|324980477|gb|EGC16143.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Kingella denitrificans ATCC
33394]
Length = 182
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 105/171 (61%), Gaps = 9/171 (5%)
Query: 1 MNINPVRILKTRK-----FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
MN +P R+ ++ F DSRG+F +T+ E + FVQ+NHS S G +RG
Sbjct: 1 MNASPTRLPDVKRIDPHIFRDSRGFFMETFRHDWFCEHVAERAFVQENHSQSHQ-GVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q AQ KLVR AGR+FD+AVD+R++SPT+G W + +SA NG Q+++P GFAHG
Sbjct: 60 LHYQTE-NAQGKLVRVTAGRVFDVAVDMRQDSPTFGQWAAEILSAENGRQLWLPEGFAHG 118
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
F L+ ++Y+ TD+++ + + W D + ITWPL P +S KD
Sbjct: 119 FYVLDGPATLLYRCTDYHNPSAEQTLRWDDPHVGITWPLQGA--PLLSPKD 167
>gi|388935|gb|AAA63159.1| TDP-deoxyglucose-epimerase [Neisseria meningitidis]
Length = 180
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 99/161 (61%), Gaps = 4/161 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+ILK + F+D RG+F +T+ KE FVQ+NHS S G +RGLH+Q Q
Sbjct: 11 VKILKPQVFKDGRGFFMETFRDGWFKENIADCSFVQENHSKSGK-GVLRGLHYQTE-NTQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L EV
Sbjct: 69 GKLVRVVVGEVFDVAVDMREGSPTFGKWTGATLSAQNQYQLWIPEGFAHGFCVLGDAAEV 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK TD+Y+ + + + W D ++ I WPL P++S KD
Sbjct: 129 VYKCTDYYNPKAEHSLIWNDPTVGIDWPLQGE--PNLSPKD 167
>gi|325133154|gb|EGC55825.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis M6190]
gi|325138770|gb|EGC61322.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
ES14902]
gi|325143303|gb|EGC65639.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
961-5945]
gi|325197380|gb|ADY92836.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis G2136]
Length = 179
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 103/164 (62%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKS-GKGVLRGLHYQTE- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 NTQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y+ E + + W D ++ I WPL P++S KD
Sbjct: 126 AEFVYKCTDYYNPEAEHSLIWNDPTVGIDWPLQGE--PNLSPKD 167
>gi|241763426|ref|ZP_04761480.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidovorax delafieldii 2AN]
gi|241367368|gb|EER61689.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidovorax delafieldii 2AN]
Length = 181
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 112/178 (62%), Gaps = 7/178 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSK-LLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ + F D+RG+F ++++ + G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVVLIEPKVFGDARGFFYESFNQRDFNAATGTDYQFVQDNHSRS-SKGVLRGLHYQ 64
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
+ P Q KLVR + G +FD+AVDIR++SPT+G WV E+SA+N Q++IP GFAHGF+
Sbjct: 65 VQQP--QGKLVRVVHGAVFDVAVDIRKSSPTFGQWVGAELSADNHHQLWIPPGFAHGFVV 122
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
L E +YK TD+Y+ EH+ +AW D ++ I W T P++S KD L Q +
Sbjct: 123 LSDVAEFLYKTTDYYAPEHERCIAWNDSTLAIDWRFEGT--PNLSVKDAQGRVLVQAE 178
>gi|239997866|ref|ZP_04717790.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae 35/02]
gi|240015153|ref|ZP_04722066.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae DGI18]
gi|240122224|ref|ZP_04735186.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae
PID24-1]
gi|240124613|ref|ZP_04737499.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae
SK-92-679]
gi|268593712|ref|ZP_06127879.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria gonorrhoeae 35/02]
gi|268683180|ref|ZP_06150042.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae
SK-92-679]
gi|268547101|gb|EEZ42519.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria gonorrhoeae 35/02]
gi|268623464|gb|EEZ55864.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae
SK-92-679]
gi|317165316|gb|ADV08857.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 185
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 97/161 (60%), Gaps = 4/161 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V++LK + F D RG+F +T+ KE FVQ+NHS S G +RGLH+Q Q
Sbjct: 11 VKLLKPQVFTDGRGFFMETFRDGWFKENIADRTFVQENHSNS-SKGVLRGLHYQTE-NTQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L EV
Sbjct: 69 GKLVRIVVGEVFDVAVDMREGSPTFGKWAGATLSAQNRYQLWIPEGFAHGFCVLGDAAEV 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK TD+Y+ E + + W D +I I WPL P +S KD
Sbjct: 129 VYKCTDYYNPETEQVLIWNDPAIGIGWPL--QTAPLLSPKD 167
>gi|225023509|ref|ZP_03712701.1| hypothetical protein EIKCOROL_00367 [Eikenella corrodens ATCC
23834]
gi|224943749|gb|EEG24958.1| hypothetical protein EIKCOROL_00367 [Eikenella corrodens ATCC
23834]
Length = 180
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 104/169 (61%), Gaps = 4/169 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+I++ D RG+F +T+ +E F+Q+NHS S + G +RGLH+Q Q
Sbjct: 11 VKIIEPEVHGDERGFFMETFRDNWFREHIGHHTFMQENHSRS-EHGVLRGLHYQTV-CPQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR +AG +FD+AVD+RR+SPT+G WV +SA N Q++IP GFAHGF T + + ++
Sbjct: 69 GKLVRVVAGSVFDVAVDLRRSSPTFGHWVGAVLSAENRYQMWIPPGFAHGFYTTDSHADI 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+YK T++Y +H+ + W D ++ I WPL P +S KD L Q
Sbjct: 129 VYKCTNYYQPDHEHTLFWHDPAVGIDWPL--AAPPLLSGKDAAGSLLAQ 175
>gi|329954898|ref|ZP_08295915.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides clarus YIT 12056]
gi|328527002|gb|EGF54013.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides clarus YIT 12056]
Length = 182
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 109/165 (66%), Gaps = 4/165 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I+ V I++ R F D+RG+F + + + + + DV FVQDN S S G +RGLH+Q+
Sbjct: 8 IDGVWIIEPRVFNDARGYFMEAFKEEEFR-ANIGDVHFVQDNESKS-SFGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR I G++ D+AVD+RR+SPT+G +VS+E+S N Q +IP GFAHGF+ L
Sbjct: 66 EYSQAKLVRVIKGKVLDVAVDLRRSSPTFGKYVSVELSEENKRQFFIPRGFAHGFLVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YKV + Y+ + ++ + + D+++ I WP+ ++ VSEKD
Sbjct: 126 EAIFTYKVDNGYAPQAEASIRFNDETVGIDWPVAESQFI-VSEKD 169
>gi|325138752|gb|EGC61304.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
ES14902]
gi|325197361|gb|ADY92817.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis G2136]
Length = 185
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 103/164 (62%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKS-GKGVLRGLHYQTE- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 NTQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y+ E + + W D ++ I WPL P++S KD
Sbjct: 126 AEFVYKCTDYYNPEAEHSLIWNDPTVGIDWPLQGE--PNLSPKD 167
>gi|329962830|ref|ZP_08300715.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides fluxus YIT 12057]
gi|328529387|gb|EGF56300.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides fluxus YIT 12057]
Length = 182
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 109/166 (65%), Gaps = 4/166 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
IN V +++ + F D+RG+F + + + + + DV F+QDN S S G +RGLH+Q+
Sbjct: 7 EINGVWLIEPKVFRDARGYFMEAFKEEEFR-AHIGDVHFIQDNESKS-SFGVLRGLHYQK 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Y+QAKLVR + GR+ D+AVD+RR+SPT+G +VS+E+S N Q +IP GFAHGF+ L
Sbjct: 65 GEYSQAKLVRVLKGRVLDVAVDLRRSSPTFGKYVSVELSEENKRQFFIPRGFAHGFLVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YKV + Y+ + ++ + + D++I I WP+ + L +SEKD
Sbjct: 125 DEAVFTYKVDNAYAPQAEASIRFNDETIGIEWPVAEEQLL-LSEKD 169
>gi|161869099|ref|YP_001598265.1| dTDP-D-glucose 4,6-dehydratase [Neisseria meningitidis 053442]
gi|161594652|gb|ABX72312.1| dTDP-D-glucose 4,6-dehydratase [Neisseria meningitidis 053442]
Length = 179
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 100/164 (60%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLHYQTE- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L
Sbjct: 66 NTQGKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFCVLGDA 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
EV+YK TD+Y E + + W D ++ I WPL P++S KD
Sbjct: 126 AEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPLQGE--PNLSPKD 167
>gi|257465949|ref|ZP_05630260.1| dTDP-4-dehydrorhamnose reductase [Fusobacterium gonidiaformans ATCC
25563]
gi|315917105|ref|ZP_07913345.1| spore coat polysaccharide biosynthesis protein spsK [Fusobacterium
gonidiaformans ATCC 25563]
gi|313690980|gb|EFS27815.1| spore coat polysaccharide biosynthesis protein spsK [Fusobacterium
gonidiaformans ATCC 25563]
Length = 475
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 108/171 (63%), Gaps = 6/171 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I+ T KFED RG+FS+ Y ++LG+Q+ F+Q+N SFS GT+RGLHFQ
Sbjct: 10 ELEGVYIIHTVKFEDERGYFSEVYQKDSFRDLGIQENFIQENVSFS-KKGTLRGLHFQTK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KL+R + G+I+D+ VD+R+ S TYG ++ +E+S+ + ++IP FAHGF++L
Sbjct: 69 K-KQGKLLRVLEGKIYDVIVDLRKESSTYGKYIGIELSSKDQNLLWIPPDFAHGFLSLAE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS----VSEKDQN 168
+ Y+ TD Y +E++ G+ W D+ ++I W L + +SEKD+
Sbjct: 128 KNIIQYQCTDSYDMEYEEGILWSDQDLNIDWKLDEYGFSEEELIISEKDKK 178
>gi|83746220|ref|ZP_00943274.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia solanacearum UW551]
gi|207744129|ref|YP_002260521.1| dtdp-4-dehydrorhamnose 3,5-epimerase protein [Ralstonia
solanacearum IPO1609]
gi|83727186|gb|EAP74310.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia solanacearum UW551]
gi|206595533|emb|CAQ62460.1| dtdp-4-dehydrorhamnose 3,5-epimerase protein [Ralstonia
solanacearum IPO1609]
Length = 183
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 106/166 (63%), Gaps = 7/166 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ-R 60
I V IL+ + F D RG+F ++++++ ++ G++ FVQDNHS S G +RGLH+Q +
Sbjct: 10 IPEVLILEPKVFGDDRGFFFESFNARTFEQATGVKRTFVQDNHSRS-ARGVLRGLHYQIQ 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLVR G +FD+AVD+R+ SPT+G WV + +SA N Q+++P GFAHGF+
Sbjct: 69 QP--QGKLVRVTVGEVFDVAVDLRKRSPTFGKWVGVTLSAENKRQLWVPEGFAHGFVVTS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD++ EH+ + W D + I WP+ T P ++ KD
Sbjct: 127 DYAEFLYKTTDYWYAEHERSIVWNDPDLGIEWPVQGT--PILAAKD 170
>gi|146294971|ref|YP_001185395.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella putrefaciens
CN-32]
gi|145566661|gb|ABP77596.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella putrefaciens
CN-32]
gi|319424481|gb|ADV52555.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella putrefaciens 200]
Length = 181
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 109/168 (64%), Gaps = 5/168 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ + F D RG+F ++++ + + +G Q FVQDNHS S G +RGLH+Q
Sbjct: 7 KIADVKIIEPKVFGDERGFFFESFNQQQFEAAIGRQVQFVQDNHSKS-SKGVLRGLHYQG 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQAKLVRC+ G +FD+ VDIR+NS T+G W+ + ++A N Q++IP GFAHGF+TL
Sbjct: 66 SPHAQAKLVRCVVGEVFDVVVDIRKNSSTFGEWLGVSLTAENKRQLWIPQGFAHGFLTLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK TD+Y + + W D ++I WP+ P +S KDQ
Sbjct: 126 DTAECLYKTTDYYHQASEGAIRWDDPQLNIQWPIKS---PLLSLKDQQ 170
>gi|294138870|ref|YP_003554848.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella violacea DSS12]
gi|293325339|dbj|BAJ00070.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella violacea DSS12]
Length = 181
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 101/165 (61%), Gaps = 3/165 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I +++L R ED RG F +T+ ++ FVQ+NHS S G +RGLHFQ P
Sbjct: 8 IADLKLLSPRVHEDERGCFCETFRDSWFRQQIADVTFVQENHSRSIK-GCLRGLHFQ-SP 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+Q KL+R + G IFD+AVD+R++SP+ G W +SA N Q+++P GFAHGF +
Sbjct: 66 RSQGKLIRVVVGEIFDVAVDLRKHSPSLGQWFGTYLSAKNRQQMWLPAGFAHGFYVTSDS 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E+IYK TD+Y+ E + + W D ++ I WPL LP +S KD+
Sbjct: 126 AEIIYKCTDYYAPEFEKTLTWDDDTLAIDWPLRGQ-LPILSSKDK 169
>gi|163748892|ref|ZP_02156144.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella benthica KT99]
gi|161331666|gb|EDQ02471.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella benthica KT99]
Length = 181
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 101/164 (61%), Gaps = 3/164 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I +++L R ED RG F +T+ ++ FVQ+NHS S G +RGLHFQ P
Sbjct: 8 IAGLKLLSPRVHEDERGSFCETFRDSWFRQQIADVTFVQENHSRSIK-GCLRGLHFQSP- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+Q KL+ + G IFD+AVD+R++SP+ G W +SANN Q+++P GFAHGF
Sbjct: 66 RSQGKLIGVVVGEIFDVAVDLRQDSPSLGQWFGTYLSANNRQQMWLPAGFAHGFYVTSNA 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E+IYK TD+Y+ E + +AW D S+ I WP L+ +P +S KD
Sbjct: 126 AEIIYKCTDYYAPEFEKILAWDDASLAINWP-LEGQVPILSSKD 168
>gi|319427033|gb|ADV55107.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella putrefaciens 200]
Length = 181
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 104/168 (61%), Gaps = 6/168 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I ++I++ F D RG+F +T++ K + L G FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDIKIIEPTVFGDERGFFMETWNQKQFEVLVTGKPTTFVQDNHSKS-KKGILRGLHYQT 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G +FD+AVDIR+NS T+G WV +SA+N Q++IP GFAHGF
Sbjct: 67 EN-TQGKLVRVVYGEVFDVAVDIRKNSSTFGQWVGEFLSADNKRQLWIPEGFAHGFYVTS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK T++Y +E + + W D ++ I WP++ P +S KD+N
Sbjct: 126 DEAEFVYKCTNYYKLESEQSIRWNDNTLGIDWPIIGK--PVLSNKDKN 171
>gi|7592818|dbj|BAA94405.1| dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase [Actinobacillus
actinomycetemcomitans]
Length = 180
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 102/165 (61%), Gaps = 4/165 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++L+ + F D RG+F +T+ + ++ FVQ+NHS S G +RGLH+Q
Sbjct: 7 KIPDVKLLEPQVFGDERGFFMETFRDEWFRKNVADRTFVQENHSKSIK-GVLRGLHYQTE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR ++G +FD+AVD+R NSPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 N-TQGKLVRVVSGAVFDVAVDMRENSPTFGQWVGEVLSAENKHQLWVPEGFAHGFYVLTG 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E YK TD+Y+ + + + W D+++ I WPL PS+S KD
Sbjct: 125 EAEFTYKCTDYYNPKAEYSLIWNDETVGIEWPLYGE--PSLSAKD 167
>gi|238021433|ref|ZP_04601859.1| hypothetical protein GCWU000324_01333 [Kingella oralis ATCC 51147]
gi|237868413|gb|EEP69419.1| hypothetical protein GCWU000324_01333 [Kingella oralis ATCC 51147]
Length = 180
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 103/164 (62%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+IL+ + F D RG+F +T+ E + FVQ+NHS S + G +RGLH+Q
Sbjct: 8 IPDVKILEPQVFGDERGFFMETFRDNWFNEHIARRTFVQENHSKS-NKGVLRGLHYQ-TE 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G + D+AVD+RR+SPT+G W +SA+N Q+++P GFAHGF LE +
Sbjct: 66 NTQGKLVRVVVGSVLDVAVDLRRSSPTFGKWAGAVLSADNKRQLWVPEGFAHGFYVLEDH 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
TE +YK TD+Y+ + + + W D +I I W L PS+S KD
Sbjct: 126 TEFVYKCTDYYNPKAEHSLIWNDPTIGIDWQLNGE--PSLSAKD 167
>gi|281423225|ref|ZP_06254138.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella oris F0302]
gi|281402561|gb|EFB33392.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella oris F0302]
Length = 182
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 104/164 (63%), Gaps = 2/164 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ F D+RG+F + + ++ + + F+QDN S S G +RGLH+Q+
Sbjct: 8 IKGVYIIEPHVFNDARGYFFEAWKNEEFQRNVGKINFIQDNESKS-SYGVLRGLHYQKGE 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+QAKLVR I G++ D+AVDIR++SPT+G +V +E+S N Q +IP GFAHGF+ L
Sbjct: 67 YSQAKLVRVIKGKVLDVAVDIRKSSPTFGKYVMVELSDENKRQFFIPRGFAHGFLVLSEE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YKV + Y+ +H++ + W D+ I I WP ++T SEKD
Sbjct: 127 AIFTYKVDNVYAPQHEASIRWNDEDIHIEWP-IETKDVLTSEKD 169
>gi|291615352|ref|YP_003525509.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sideroxydans lithotrophicus
ES-1]
gi|291585464|gb|ADE13122.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sideroxydans lithotrophicus
ES-1]
Length = 186
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 100/172 (58%), Gaps = 3/172 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ + +++ + ED RG+ S+ Y + +E GL Q N + + G +RG+HFQ PP
Sbjct: 11 LSGLTLVQRKAIEDQRGFLSRFYCADEFREAGLTKAIKQINQTLTRKKGAVRGMHFQYPP 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y +AKLV C+ G IFD+AVD+R NSPT+ W +SA N + IP GFAHGF TL +
Sbjct: 71 YVEAKLVSCLHGEIFDVAVDLRSNSPTFLHWHGAILSAQNRQSLLIPEGFAHGFQTLTED 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E+IY T+ Y E + + + D + I WPL T +S++D N + Q
Sbjct: 131 CELIYLHTESYHPEAEGALNFADPKLGIVWPLATT---EISDRDMNHKLIEQ 179
>gi|254671514|emb|CBA09106.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
alpha153]
Length = 184
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 100/164 (60%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLHYQTE- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+A+D+R SPT+G W +SA N Q++IP GFAHGF L
Sbjct: 71 NTQGKLVRVVVGEVFDVAIDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFYVLSDT 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
TE+ YK TD+Y E + + W D +I I WPL P++S KD
Sbjct: 131 TELTYKCTDYYKPEAEQVLIWNDPAIGIDWPLQGE--PNLSPKD 172
>gi|167623434|ref|YP_001673728.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella halifaxensis
HAW-EB4]
gi|167353456|gb|ABZ76069.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella halifaxensis
HAW-EB4]
Length = 189
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 104/169 (61%), Gaps = 7/169 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSK----LLKELGLQ-DVFVQDNHSFSFDCGTIRGLH 57
I V + + + F D RG+F +T+ L ++G+ FVQ+N S S +RGLH
Sbjct: 9 IPDVLLFEPKVFGDERGFFMETFRQSEFEALFAKVGMACPSFVQENMSRS-QKHVLRGLH 67
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
+Q + Q KLVR AG IFD+AVDIR+ S TYG W +SA N LQ+YIP GFAHGF+
Sbjct: 68 YQET-HPQGKLVRVTAGSIFDVAVDIRKASKTYGQWFGQVLSAENRLQMYIPPGFAHGFL 126
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
TL + ++IYK T +Y+ E + + W D ++I WPL + + P +SEKD
Sbjct: 127 TLSDHADIIYKCTAYYAAEFEKCITWNDPQLNIQWPLEEGVEPILSEKD 175
>gi|325129165|gb|EGC52012.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis N1568]
Length = 185
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 102/164 (62%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKS-GKGVLRGLHYQTE- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 NTQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y E + + W D +I I WPL P++S KD
Sbjct: 126 AEFVYKCTDYYKPEAEQVLIWNDPAIGIDWPL--QTEPNLSPKD 167
>gi|325129127|gb|EGC51975.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis N1568]
Length = 179
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 102/164 (62%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKS-GKGVLRGLHYQTE- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 NTQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y E + + W D +I I WPL P++S KD
Sbjct: 126 AEFVYKCTDYYKPEAEQVLIWNDPAIGIDWPL--QTEPNLSPKD 167
>gi|585831|sp|P37763|RMLC_NEIGO RecName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; AltName:
Full=Thymidine diphospho-4-keto-rhamnose 3,5-epimerase;
AltName: Full=dTDP-4-keto-6-deoxyglucose 3,5-epimerase;
AltName: Full=dTDP-6-deoxy-D-xylo-4-hexulose
3,5-epimerase; AltName: Full=dTDP-L-rhamnose synthase
gi|520898|emb|CAA83654.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae]
gi|1333795|emb|CAA79720.1| rfbC [Neisseria gonorrhoeae]
Length = 328
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 97/161 (60%), Gaps = 4/161 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V++LK + F D RG+F +T+ KE FVQ+NHS S G +RGLH+Q Q
Sbjct: 11 VKLLKPQVFTDGRGFFMETFRDGWFKENIADRTFVQENHSNSSK-GVLRGLHYQ-TENTQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L EV
Sbjct: 69 GKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNRYQLWIPEGFAHGFCVLGDAAEV 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK TD+Y+ E + + W D +I I WPL P +S KD
Sbjct: 129 VYKCTDYYNPETEQVLIWNDPAIGIGWPL--QTAPLLSPKD 167
>gi|107021949|ref|YP_620276.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia cenocepacia AU
1054]
gi|116688896|ref|YP_834519.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia cenocepacia
HI2424]
gi|170732197|ref|YP_001764144.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia cenocepacia
MC0-3]
gi|105892138|gb|ABF75303.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia cenocepacia AU
1054]
gi|116646985|gb|ABK07626.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia cenocepacia
HI2424]
gi|169815439|gb|ACA90022.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia cenocepacia
MC0-3]
Length = 183
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 99/150 (66%), Gaps = 3/150 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ + F D+RG+F ++++ K E V FVQDNHS S G +RGLH+Q +A
Sbjct: 13 VKIIEPKVFGDARGFFYESFNGKEFAEQVAPGVEFVQDNHSRS-SKGVLRGLHYQIQ-HA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVDIR++SP +G WV + +S +N Q+++P GFAHGF+ L +
Sbjct: 71 QGKLVRVVEGEVFDVAVDIRKDSPNFGKWVGVVLSNDNHRQLWVPPGFAHGFVVLSEAAQ 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
+YK TD++ EH+ + W D I I WP+
Sbjct: 131 FLYKTTDYWFPEHERSIVWNDPEIGIEWPI 160
>gi|258649191|ref|ZP_05736660.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella tannerae ATCC
51259]
gi|260850455|gb|EEX70324.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella tannerae ATCC
51259]
Length = 185
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 106/165 (64%), Gaps = 2/165 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
IN V IL+ R FED+RG+F +T+ + K +G + F+QDN S S G +RGLH+Q+
Sbjct: 8 INGVYILEPRVFEDARGYFMETWRKADFDKAIGYEVNFIQDNQSKS-SLGVLRGLHYQKG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+QAKLVR + G + D+AVD+RR+SPT+G +V++E+S N Q++IP GFAHGF
Sbjct: 67 DTSQAKLVRVLQGCVVDVAVDLRRSSPTFGKYVAVELSDKNQRQLFIPRGFAHGFQVTSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YKV + YS ++ + + D ++ I WP+ D + +S+KD
Sbjct: 127 TAVFAYKVDNIYSPTTEASIRFDDPTLAIEWPIQDQNIIKLSDKD 171
>gi|84386903|ref|ZP_00989927.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Vibrio splendidus
12B01]
gi|84378193|gb|EAP95052.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Vibrio splendidus
12B01]
Length = 181
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 100/166 (60%), Gaps = 6/166 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ F D RG+F +T++ K + L G FVQDNHS S G +RGLH+Q
Sbjct: 8 ITDVKIIEPSVFGDERGFFMETWNQKQFEGLVTGKPTQFVQDNHSKS-KKGILRGLHYQT 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR ++G +FD+AVDIR SPT+G WV +SA N Q+++P GFAHGF
Sbjct: 67 EN-TQGKLVRVVSGEVFDVAVDIREGSPTFGQWVGEYLSAENKRQLWVPEGFAHGFYVTS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y+ + + W DK I I WPLL +S+KD
Sbjct: 126 EEAEFVYKCTDYYNPNAEVSICWSDKDIGIEWPLLGEAF--LSKKD 169
>gi|319942931|ref|ZP_08017214.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lautropia mirabilis ATCC
51599]
gi|319743473|gb|EFV95877.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lautropia mirabilis ATCC
51599]
Length = 190
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 105/168 (62%), Gaps = 10/168 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V +++ + F DSRG+F ++Y+ K+ E+ V FVQDN S S G +RGLH+Q A
Sbjct: 11 VFLIEPKVFGDSRGYFYESYNQKVFDEMAGSHVEFVQDNQSRSAK-GVLRGLHYQIQ-QA 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KL+R + G IFD+AVDIRR SPT+G +SA N +IP GFAHGF++LE T
Sbjct: 69 QGKLIRVMEGAIFDVAVDIRRGSPTFGKSAGFVLSAENKRMAWIPPGFAHGFLSLEDGTT 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPL-----LDTILPSVSEKDQ 167
V+YK +DFY+ H+ + W D + I WPL L +L VS+KD+
Sbjct: 129 VLYKASDFYAPAHERSLLWSDPVLGIEWPLDQVGGLSAVL--VSDKDK 174
>gi|217421153|ref|ZP_03452658.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
576]
gi|217396565|gb|EEC36582.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
576]
Length = 183
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 113/174 (64%), Gaps = 9/174 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE---LGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
V+I++ + F D+RG+F ++++++ E G++ F+QDNHS S G +RGLH+Q
Sbjct: 13 VKIIEPKVFGDARGFFFESFNAREFAEQVDAGVE--FIQDNHSRS-AKGVLRGLHYQIQ- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVR + G +FD+AVDIR++SP +G WV + +SA+N Q+++P GFAHGF+ L
Sbjct: 69 HAQGKLVRVVEGEVFDVAVDIRKSSPNFGKWVGVVLSADNHRQLWVPPGFAHGFVVLSDA 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD++ E + +AW D +I I WP+ D P ++ KD L + +
Sbjct: 129 AQFLYKTTDYWFPEFERSIAWNDPAIGIDWPIDDE--PLLAAKDAAGKLLAEAE 180
>gi|300114908|ref|YP_003761483.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosococcus watsonii C-113]
gi|299540845|gb|ADJ29162.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosococcus watsonii C-113]
Length = 181
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 104/165 (63%), Gaps = 9/165 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ--RPP 62
V +++ R F D RG+F ++Y+ +Q FVQDNHS+S +RGLH+Q +P
Sbjct: 11 VLLIEPRVFGDERGFFFESYNRVAFAAATDIQAEFVQDNHSYSAKH-VLRGLHYQIHQP- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR IAG +FD+AVD+RR+SP +G WV +SA N Q++IP GFAHGF+ L
Sbjct: 69 --QGKLVRVIAGEVFDVAVDLRRHSPGFGRWVGYRLSAENRRQLWIPGGFAHGFLVLSEY 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E +YK T +Y+ E++ + W D + I WPL + +P +S KDQ
Sbjct: 127 AEFLYKTTAYYAPEYERCIRWDDPDLAIDWPLEE--VPLISAKDQ 169
>gi|323345500|ref|ZP_08085723.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella oralis ATCC 33269]
gi|323093614|gb|EFZ36192.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella oralis ATCC 33269]
Length = 182
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 108/175 (61%), Gaps = 4/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ F D+RG+F + + S K +G + F+QDN S S G +RGLH+QR
Sbjct: 8 IQGVWIIEPEVFNDTRGYFFEVWKQSDFNKHIG-EIHFIQDNESKS-AFGVLRGLHYQRG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR I G++ D+AVDIRR+SPT+G ++ +E+S +N Q +IP GFAHGF+ L
Sbjct: 66 TYSQAKLVRVIKGKVLDVAVDIRRSSPTFGKYIMVELSDDNKKQFFIPRGFAHGFLVLSN 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YKV + Y+ +H++ + W D ++I WP +D S+KD P L +
Sbjct: 126 EAIFTYKVDNAYAPQHEANICWNDPELNIKWP-IDPAKIITSQKDLAAPLLKNAE 179
>gi|303237108|ref|ZP_07323678.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella disiens
FB035-09AN]
gi|302482495|gb|EFL45520.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella disiens
FB035-09AN]
Length = 182
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 105/168 (62%), Gaps = 3/168 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
NI V I++ + F D+RG+F + + S K +G FVQDN S S G +RGLH+Q+
Sbjct: 7 NIEGVWIMEPKVFNDNRGYFYEVWKQSDFDKNIGKHVEFVQDNESKS-TFGVLRGLHYQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Y+QAKLVR + G++ D+AVD+R++SPT G +V E+S N Q +IP GFAHGF+ L
Sbjct: 66 GEYSQAKLVRVLKGKVLDVAVDLRKDSPTLGKYVMAELSDENKRQFFIPRGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YKV + Y+ + ++G+ W D++I I WP +D SEKD +
Sbjct: 126 DEAIFTYKVDNVYAPQSEAGIRWDDETIGIEWP-IDMNKVITSEKDNH 172
>gi|154490151|ref|ZP_02030412.1| hypothetical protein PARMER_00381 [Parabacteroides merdae ATCC
43184]
gi|154089043|gb|EDN88087.1| hypothetical protein PARMER_00381 [Parabacteroides merdae ATCC
43184]
Length = 217
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 110/180 (61%), Gaps = 1/180 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ + F+D+RG+F + + +E + FVQDN S S G +RGLH+Q
Sbjct: 39 EIPGVWIIEPKVFKDARGYFMEAWKKAEFEEHIGKVEFVQDNESCS-SKGVLRGLHYQLA 97
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY+Q+KLVR I G + D+AVD+R+ SPT+G +V++E+S N Q +IP GFAHGF +
Sbjct: 98 PYSQSKLVRVIKGCVLDVAVDLRKGSPTFGKYVAVELSDENKRQFFIPQGFAHGFHVMSE 157
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YKV + Y+ H+ G+ + D ++ + W + + + ++S+KD+N L + FE+
Sbjct: 158 EAVFTYKVDNPYAPTHERGLRFDDPTVGVDWKITEPAILNLSDKDRNAALLQDAEINFEF 217
>gi|158521972|ref|YP_001529842.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfococcus oleovorans
Hxd3]
gi|158510798|gb|ABW67765.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfococcus oleovorans
Hxd3]
Length = 191
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 105/166 (63%), Gaps = 3/166 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ ++ D+RG+ + + ++ L G Q NH+++ GT+RG+HFQRPP+A+ K
Sbjct: 21 LVQRKRMGDARGFLERLFCAEELTRAGWDGPIAQINHTYTAAAGTLRGMHFQRPPHAEKK 80
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV C+ GR+FD+AVD R+ SPT+ W ++ + IP GFAHGF TL + E++Y
Sbjct: 81 LVMCLKGRVFDVAVDTRKGSPTFLKWHGEILAPEAANALLIPEGFAHGFQTLTDDVEMLY 140
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ Y+ +H+ G+ QD +I+I WP D ++ ++S++DQ PFL
Sbjct: 141 CHSAVYAPDHEGGLHPQDPAINIQWP--DELV-TLSDRDQGHPFLG 183
>gi|149185655|ref|ZP_01863971.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Erythrobacter sp. SD-21]
gi|148830875|gb|EDL49310.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Erythrobacter sp. SD-21]
Length = 181
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 109/173 (63%), Gaps = 8/173 (4%)
Query: 1 MNINPVR-----ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M ++P + +++ + F D RG+F +++++ KE+GL FVQDNHS S G +RG
Sbjct: 1 MKVHPTKLADAVVIEPQVFGDERGFFLESWNNSSFKEVGLNLDFVQDNHSCS-SSGVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q P Q KLVR + G ++D+ VD+RR+SP++G + EISA N +++P GFAHG
Sbjct: 60 LHYQLP-NPQGKLVRVVRGAVYDVIVDLRRSSPSFGLHEAFEISAANKRILWVPPGFAHG 118
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
F+TL +T +YK T +Y + + W D + I WPL + P VS+KD+N
Sbjct: 119 FLTLCDDTHFLYKCTAYYEPSSEHSLVWNDPDLAIDWPLSEGA-PDVSDKDRN 170
>gi|325143337|gb|EGC65670.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
961-5945]
Length = 185
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 102/164 (62%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKS-GKGVLRGLHYQTE- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 NTQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y+ E + + W D ++ I WPL P +S KD
Sbjct: 126 AEFVYKCTDYYNPEAEHSLIWNDPTVGIDWPL--QTAPLLSPKD 167
>gi|253572901|ref|ZP_04850299.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 1_1_6]
gi|251837533|gb|EES65626.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 1_1_6]
Length = 190
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 111/183 (60%), Gaps = 9/183 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ + ++D RG+F +++++ E D+ FVQDN S S G +RGLH+Q+
Sbjct: 8 IESVLIIEPKVYQDERGYFFESFNANEFSEKTGMDIHFVQDNESMS-SYGVMRGLHYQKM 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY Q+KLVRC+ G + D+AVDIR SPT+G V++E++ N Q ++P GFAHGF L
Sbjct: 67 PYTQSKLVRCVKGAVLDVAVDIRYGSPTFGQHVAVELTEENHRQFFVPRGFAHGFAVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPF 179
YK +FY E D+G+ +D+S+ I W P+ IL SEKD L D+ +
Sbjct: 127 TALFQYKCDNFYHPEADAGINIKDESLGIDWKVPVEHAIL---SEKDLKHACLK--DASY 181
Query: 180 EYD 182
++D
Sbjct: 182 DFD 184
>gi|86144024|ref|ZP_01062362.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leeuwenhoekiella blandensis
MED217]
gi|85829484|gb|EAQ47948.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leeuwenhoekiella blandensis
MED217]
Length = 178
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 102/160 (63%), Gaps = 3/160 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
IL+ R F+D RG+F ++++ K +EL Q V FVQDN SFS G IRG+HFQ+ +AQA
Sbjct: 13 ILEPRVFKDDRGYFFESFNQKTFEELVGQPVHFVQDNQSFS-QYGVIRGIHFQKGAHAQA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR + G + D+AVD+R SPTYG V+++++A N Q+++P GF HGF L
Sbjct: 72 KLVRVLEGEVLDVAVDLREGSPTYGQHVAVKLNAENNRQLFVPRGFGHGFSVLSETAVFA 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK ++Y + G+ + D ++ I W + + + VSEKD
Sbjct: 132 YKCDNYYHKASEGGIVYNDPTLAIDWGIPEEKI-QVSEKD 170
>gi|296126188|ref|YP_003633440.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brachyspira murdochii DSM
12563]
gi|296018004|gb|ADG71241.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brachyspira murdochii DSM
12563]
Length = 177
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 105/163 (64%), Gaps = 2/163 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
IL+ ED RG+F + + +K L++ L +Q N +++ GT+RG+H+Q+ PY + K
Sbjct: 13 ILQNNYIEDERGYFLRMFDNKELEKYNLNFNLIQSNINYNKKVGTLRGMHYQKYPYPEIK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
+VRC+ G+IFD+ DIR++SPTYG + S+E+S NG +YIP AHGF TLE +T V Y
Sbjct: 73 IVRCLKGKIFDVIADIRKDSPTYGKYSSIELSEENGKMVYIPPYVAHGFQTLEDDTIVAY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
++ ++ + + W D + +I WP + + ++EKD+N+P
Sbjct: 133 FLSTYFVPDAYGYLRWNDLAFNIKWPECENRI--MNEKDKNIP 173
>gi|197124807|ref|YP_002136758.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anaeromyxobacter sp. K]
gi|196174656|gb|ACG75629.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anaeromyxobacter sp. K]
Length = 188
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 98/160 (61%), Gaps = 4/160 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+++ R F D+RG+F ++++ K +G FVQDNHS S G +RGLH+Q P Q
Sbjct: 13 VVEPRVFGDARGYFFESFNQKAFDAAVGRHVEFVQDNHSLS-GRGVLRGLHYQLP-NPQG 70
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR G +FD+AVD+RR SPT+G W +SA N Q++IP GFAHGF+ E +
Sbjct: 71 KLVRVTRGEVFDVAVDLRRGSPTFGRWAGEILSAENKRQLWIPEGFAHGFLVRSDEAEFV 130
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK+TD++ EH+ + W D + I WP + P VS KD
Sbjct: 131 YKITDYWHPEHEHCIRWDDPVLGIDWP-TGGVRPLVSAKD 169
>gi|325279646|ref|YP_004252188.1| Sigma 54 interacting domain-containing protein [Odoribacter
splanchnicus DSM 20712]
gi|324311455|gb|ADY32008.1| Sigma 54 interacting domain protein [Odoribacter splanchnicus DSM
20712]
Length = 183
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 103/170 (60%), Gaps = 3/170 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I+ V IL+ R F D RG+F +++S + E + FVQDN S S G +RGLH+Q P
Sbjct: 7 SISDVVILEPRVFGDERGYFFESFSQREFNEQVAEVTFVQDNESKS-SYGVVRGLHYQLP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY QAKLVR + G + D+ VD+R+NS T+G V++ +S N Q +IP GFAHGF L
Sbjct: 66 PYTQAKLVRVVEGEVLDVVVDLRKNSATFGKHVAVVLSGENKRQFFIPKGFAHGFAVLSP 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNL 169
YK ++Y+ +++SG+ + D ++ I W P + IL + K + L
Sbjct: 126 QAVFQYKCDNYYAPQYESGIQFDDPALGIDWKIPEAEMILSAKDRKHKGL 175
>gi|167903953|ref|ZP_02491158.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
NCTC 13177]
Length = 174
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 113/174 (64%), Gaps = 9/174 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE---LGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
V+I++ + F D+RG+F ++++++ E G++ F+QDNHS S G +RGLH+Q
Sbjct: 4 VKIIEPKVFGDARGFFFESFNAREFAEQVDAGVE--FIQDNHSRS-AKGVLRGLHYQIQ- 59
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVR + G +FD+AVDIR++SP +G WV + +SA+N Q+++P GFAHGF+ L
Sbjct: 60 HAQGKLVRVVEGEVFDVAVDIRKSSPNFGKWVGVVLSADNHRQLWVPPGFAHGFVVLSDA 119
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD++ E + +AW D +I I WP+ D P ++ KD L + +
Sbjct: 120 AQFLYKTTDYWFPEFERSIAWNDPAIGIDWPIDDE--PLLAAKDAAGKLLAEAE 171
>gi|332519462|ref|ZP_08395929.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lacinutrix algicola 5H-3-7-4]
gi|332045310|gb|EGI81503.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lacinutrix algicola 5H-3-7-4]
Length = 182
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 109/166 (65%), Gaps = 3/166 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSK-LLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
IL+ F DSRG+F +++++K ++ + + VF+QDN SFS G +RGLH+Q YAQA
Sbjct: 13 ILEPNVFNDSRGYFFESFNAKTFIEHVNSKTVFLQDNESFSTK-GVLRGLHYQTGEYAQA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR + G + D+AVD+R++S T+G V++E+SA N Q+++P GFAHGF+ L
Sbjct: 72 KLVRVVQGSVLDVAVDLRQDSKTFGQHVAVELSAENKKQLFVPRGFAHGFIVLSDTAIFS 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
YK ++Y+ ++G+ + DK + I W L ++ VS+KD LP L
Sbjct: 132 YKCDNYYNKASEAGIIYNDKDLKIDWKLNESDFL-VSDKDLVLPTL 176
>gi|89073289|ref|ZP_01159819.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Photobacterium sp.
SKA34]
gi|89050999|gb|EAR56463.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Photobacterium sp.
SKA34]
Length = 183
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 104/167 (62%), Gaps = 6/167 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVKIIEPSVFGDERGFFMETWNQKKFEELVAGRPTRFVQDNHSKS-KKGILRGLHYQT 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR ++G +FD+AVDIR++S T+G WV + +SA N Q+++P GFAHGF
Sbjct: 67 EN-TQGKLVRVVSGEVFDVAVDIRKDSATFGRWVGVYLSAENKRQLWVPEGFAHGFYVTS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E +YK TD+Y+ + + W D + I WP+ ++ VSEKD+
Sbjct: 126 DEAEFVYKCTDYYNPSAEHSILWNDNYLKIEWPIEGEVI--VSEKDK 170
>gi|161869080|ref|YP_001598246.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
053442]
gi|161594633|gb|ABX72293.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
053442]
Length = 185
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 99/164 (60%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLHYQTE- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L
Sbjct: 66 NTQGKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFCVLGDA 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
EV+YK TD+Y E + + W D ++ I WPL P +S KD
Sbjct: 126 AEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPL--QTAPLLSPKD 167
>gi|319411428|emb|CBY91840.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase; dTDP-L-rhamnose synthetase) [Neisseria
meningitidis WUE 2594]
Length = 184
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 99/164 (60%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCNRTFVQENHSKSGK-GVLRGLHYQTE- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L
Sbjct: 71 NTQGKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFCVLGDA 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
EV+YK TD+Y E + + W D ++ I WPL P++S KD
Sbjct: 131 AEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPLQGE--PNLSPKD 172
>gi|300692300|ref|YP_003753295.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia solanacearum PSI07]
gi|299079360|emb|CBJ52032.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia solanacearum PSI07]
Length = 183
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 105/165 (63%), Gaps = 5/165 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++++++ ++ G++ FVQDNHS S +RGLH+Q
Sbjct: 10 IPEVLILEPKVFGDDRGFFFESFNARAFEQATGVKRTFVQDNHSRS-ARNVLRGLHYQ-I 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G +FD+AVD+R++SPT+G WV + +SA N Q+++P GFAHGF+
Sbjct: 68 QHPQGKLVRVTVGEVFDVAVDLRKSSPTFGKWVGVTLSAENKRQLWVPEGFAHGFVVTSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD++ EH+ V W D + I WP+ T P ++ KD
Sbjct: 128 YAEFLYKTTDYWYAEHERSVVWNDPDLGIEWPVQGT--PILAAKD 170
>gi|291521043|emb|CBK79336.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coprococcus catus GD/7]
Length = 199
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 86/138 (62%), Gaps = 2/138 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG+F +TYS + ++E G+ FVQDN S S G +RGLHFQ+ Y Q KLVR I G
Sbjct: 26 DARGYFMETYSQRDMEENGIHIQFVQDNQSMSTK-GVLRGLHFQKN-YPQTKLVRVIKGS 83
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R S TYG W +E++ N Q IP GFAHGF+ L E YK DFY
Sbjct: 84 VFDVAVDLRSGSETYGKWYGIELTEENKKQFLIPRGFAHGFLVLSDTAEFCYKCDDFYHP 143
Query: 136 EHDSGVAWQDKSIDITWP 153
+ G+AW D I I WP
Sbjct: 144 NDEGGMAWNDPEIGIEWP 161
>gi|299067777|emb|CBJ38987.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia solanacearum CMR15]
Length = 183
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 106/165 (64%), Gaps = 5/165 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++++++ +++ G++ FVQDNHS S +RGLH+Q
Sbjct: 10 IPEVLILEPKVFGDDRGFFFESFNARAFEQVTGVKRNFVQDNHSRS-ARNVLRGLHYQ-I 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G +FD+AVD+R++SPT+G WV + +SA N Q+++P GFAHGF+
Sbjct: 68 QHPQGKLVRVTVGEVFDVAVDLRKSSPTFGKWVGVTLSAENKRQLWVPEGFAHGFVVTSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD++ EH+ + W D I I WP+ T P ++ KD
Sbjct: 128 YAEFLYKTTDYWYAEHERSIVWNDPDIGIEWPVQGT--PILAAKD 170
>gi|134297304|ref|YP_001121039.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia vietnamiensis
G4]
gi|134140461|gb|ABO56204.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia vietnamiensis
G4]
Length = 181
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 109/169 (64%), Gaps = 7/169 (4%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ + F D RG+F ++++ K + +G FVQDNHS S +RGLH+Q
Sbjct: 6 LAIPDVVLIEPQVFGDERGFFFESFNQGKFEQAIGRPVQFVQDNHSRS-TRHVLRGLHYQ 64
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
+ P Q KLVR + G +FD+AVD+R++SPT+G WV ++A+N Q+++P GFAHGF+
Sbjct: 65 IQQP--QGKLVRVVQGAVFDVAVDLRKSSPTFGQWVGATLTADNKQQLWVPEGFAHGFVV 122
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
L E +YK TD+Y+ H+ +AW D +I I WP ++P +S KD+
Sbjct: 123 LSDTAEFLYKTTDYYAPAHERSIAWNDPAIGIQWPA--GLVPQLSAKDK 169
>gi|77463589|ref|YP_353093.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides
2.4.1]
gi|126462421|ref|YP_001043535.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides ATCC
17029]
gi|332558445|ref|ZP_08412767.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides WS8N]
gi|77388007|gb|ABA79192.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides
2.4.1]
gi|126104085|gb|ABN76763.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides ATCC
17029]
gi|332276157|gb|EGJ21472.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides WS8N]
Length = 177
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 99/163 (60%), Gaps = 3/163 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ ED RGWF +T+ + + GL+ FVQ N S++ GT+RG+H+QR P+++ K
Sbjct: 13 LIEAEPREDHRGWFERTFCMEEMAGAGLKTGFVQHNSSYNHAAGTLRGMHYQRAPHSEVK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
++ C GRI D+ +D+R +SPTY W ++ A + Q+YIP GFAHG++TLE T V Y
Sbjct: 73 VITCTRGRIQDVIIDLRPDSPTYLKWEGFDLKAGDHRQLYIPEGFAHGYLTLEDATAVSY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
V+ Y+ + GV W D + I W ++ +SEKD P
Sbjct: 133 LVSAAYTPGAEGGVRWDDPAFGIDWAAEVSV---ISEKDAAWP 172
>gi|325145413|gb|EGC67689.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
M01-240013]
Length = 179
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 102/164 (62%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKS-GKGVLRGLHYQTE- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 NTQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDT 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E+ YK TD+Y E + + W D +I I WPL P++S KD
Sbjct: 126 AELTYKCTDYYKPEAEQVLIWNDPAIGIDWPLQGE--PNLSPKD 167
>gi|302028134|gb|ADK90948.1| RfbC [Neisseria meningitidis]
gi|302028155|gb|ADK90968.1| RfbC [Neisseria meningitidis]
gi|319411443|emb|CBY91858.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase; dTDP-L-rhamnose synthetase) [Neisseria
meningitidis WUE 2594]
Length = 190
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 99/164 (60%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCNRTFVQENHSKSGK-GVLRGLHYQTE- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L
Sbjct: 71 NTQGKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFCVLGDA 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
EV+YK TD+Y E + + W D ++ I WPL P++S KD
Sbjct: 131 AEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPLQGE--PNLSPKD 172
>gi|114777846|ref|ZP_01452777.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Mariprofundus ferrooxydans
PV-1]
gi|114551837|gb|EAU54377.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Mariprofundus ferrooxydans
PV-1]
Length = 183
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++ +T + D RG F++ + L + + VQ NHS + G +RG+H+Q
Sbjct: 7 KIAGVQVAETIRIADQRGAFARFFCENELAPVLGERHIVQINHSRTSQPGALRGMHYQHA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+A+ K+VRCI GR++D+AVD+RR+SPT+ W +E+SA N L + IP G AHGF LE
Sbjct: 67 PHAEMKMVRCIKGRVWDVAVDLRRDSPTFLQWHGVELSAENDLMMVIPEGCAHGFQVLEA 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+E++Y T Y+ + G+ D IDI WPL T +S++D++ P L++ Y
Sbjct: 127 ESELLYLHTARYTPTCEGGMRHDDPLIDIAWPLAVT---DISDRDRSHPLLDE-----HY 178
Query: 182 DGLPL 186
G+ L
Sbjct: 179 SGVKL 183
>gi|284044611|ref|YP_003394951.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Conexibacter woesei DSM
14684]
gi|283948832|gb|ADB51576.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Conexibacter woesei DSM
14684]
Length = 182
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 103/180 (57%), Gaps = 9/180 (5%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M + P RI L+ + F D RG+F++T+ G+ F QDNHS S GT+RG
Sbjct: 1 MRVIPTRISGPVLLEPQVFGDHRGFFAETFREDAWSAAGVDVAFAQDNHSRSRR-GTLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
+HFQ P QAKLVRC G I D+ VD+RR S T+G W + E+ + Q+++P GFAHG
Sbjct: 60 MHFQMTP-GQAKLVRCARGAIVDVVVDLRRASSTFGEWEAFELDDESMRQLFVPIGFAHG 118
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F +V+YK + +Y ++G+A+ D ++ I WP + P VSE+D P L +
Sbjct: 119 FCVTSEVADVVYKCSSYYDPATEAGIAYDDPAVGIVWP--SDVEPVVSERDAQAPRLADV 176
>gi|282898469|ref|ZP_06306459.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein [Raphidiopsis
brookii D9]
gi|281196635|gb|EFA71541.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein [Raphidiopsis
brookii D9]
Length = 181
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 112/177 (63%), Gaps = 7/177 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ- 59
I V +++ + F D RG+F ++++ KL ++ G+ FVQDNHS S +RGLH+Q
Sbjct: 7 EIPDVLLIEPQVFGDERGFFYESFNEKLFAQKTGISPHFVQDNHSRS-GKNVLRGLHYQI 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P Q KLVR AG +FDIAVD+R++SPT+ WV + IS+ N Q++IP GFAHGF+ L
Sbjct: 66 QQP--QGKLVRVTAGEVFDIAVDLRKSSPTFSQWVGVYISSANKHQLWIPPGFAHGFLVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD+Y+ + + + W D + I+WP+ D P VS KD++ +Q +
Sbjct: 124 SEYADFLYKTTDYYAQKSERTILWNDPDLAISWPIGDE--PIVSSKDKSAQLFSQAE 178
>gi|325286259|ref|YP_004262049.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cellulophaga lytica DSM 7489]
gi|324321713|gb|ADY29178.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cellulophaga lytica DSM 7489]
Length = 183
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 109/169 (64%), Gaps = 3/169 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+L+ F D RG+F ++Y++ ++ Q+V FVQDN SFS G IR LH+Q+ AQA
Sbjct: 15 VLEPTLFNDDRGYFFESYNTNRFNDIVDQEVNFVQDNQSFS-TRGVIRALHYQKGNNAQA 73
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KL+R + G I D+AVD+R +S TYG + S+E+S+ N Q+++P GFAHGF L EV+
Sbjct: 74 KLIRVLNGVILDVAVDLRPHSKTYGEYFSVELSSENKKQLFVPRGFAHGFSVLSDTAEVL 133
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK ++Y+ E + G+ + D +++I W + + VSEKD LP L +I
Sbjct: 134 YKCDNYYNKESEGGIIYNDVTLNIDWKVSPEEI-KVSEKDLILPTLKEI 181
>gi|312797097|ref|YP_004030019.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia rhizoxinica HKI
454]
gi|303399367|emb|CBK52867.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia rhizoxinica HKI
454]
gi|312168872|emb|CBW75875.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia rhizoxinica HKI
454]
Length = 183
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 106/162 (65%), Gaps = 5/162 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V++++ + F+D+RG+ ++++++ L VFVQDNHS S G +RGLH+Q +A
Sbjct: 13 VKLIEPQVFDDARGFLFESFNARDFARLVDANAVFVQDNHSRSAK-GVLRGLHYQIE-HA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVDIRR+SP +G WV + +SA N Q+++P GFAHGF+TL + E
Sbjct: 71 QGKLVRVVHGEVFDVAVDIRRSSPHFGQWVGVYLSAANRRQLWVPPGFAHGFLTLSDSAE 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK TD++ E + + W D + I WPL P V+ KD
Sbjct: 131 FLYKTTDYWFPEFERSILWNDPELGIEWPLQGD--PVVAAKD 170
>gi|254673656|emb|CBA09229.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
alpha275]
Length = 190
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 100/164 (60%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLHYQTE- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R SPT+G WV +SA N Q++IP GFAHGF L
Sbjct: 71 NTQGKLVRVVVGEVFDVAVDMREGSPTFGKWVGEILSAQNQCQLWIPEGFAHGFCVLGDA 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
EV+YK TD+Y E + + W D ++ I WPL P +S KD
Sbjct: 131 AEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPL--QTAPLLSPKD 172
>gi|218699370|ref|YP_002406999.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli IAI39]
gi|253773030|ref|YP_003035861.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162030|ref|YP_003045138.1| dTDP-4-dehydrorhamnose 3,5-epimerase RmlC [Escherichia coli B str.
REL606]
gi|297520371|ref|ZP_06938757.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli OP50]
gi|300930355|ref|ZP_07145766.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 187-1]
gi|218369356|emb|CAR17114.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli IAI39]
gi|224613067|dbj|BAH24286.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli B]
gi|242377690|emb|CAQ32450.1| ybl99 [Escherichia coli BL21(DE3)]
gi|253324074|gb|ACT28676.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253973931|gb|ACT39602.1| dTDP-4-dehydrorhamnose 3,5-epimerase (RmlC) [Escherichia coli B
str. REL606]
gi|253978125|gb|ACT43795.1| dTDP-4-dehydrorhamnose 3,5-epimerase (RmlC) [Escherichia coli
BL21(DE3)]
gi|300461755|gb|EFK25248.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 187-1]
Length = 181
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 109/174 (62%), Gaps = 5/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G IRGLHFQ P
Sbjct: 8 IPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKS-TKGVIRGLHFQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY+QAKLVRC+ G ++D+ VDIR++S T+G WV + +SA N Q++IP GFAHGF +
Sbjct: 67 PYSQAKLVRCVVGEVYDVVVDIRKDSKTFGKWVGVNLSAENKRQLWIPEGFAHGFEVISE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+YK ++Y+ + G+ W D+ + I W I +SEKD P ++
Sbjct: 127 VAHFLYKTNNYYNATMEKGIRWDDEYLAINWKEKKAI---ISEKDMKQPSFREL 177
>gi|119357790|ref|YP_912434.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium phaeobacteroides
DSM 266]
gi|119355139|gb|ABL66010.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium phaeobacteroides
DSM 266]
Length = 193
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 108/183 (59%), Gaps = 5/183 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + F D RG+F +T+ S L+ K +G D FVQDN S S G +RGLHFQ+P
Sbjct: 8 IPDVLIFEPVVFGDERGYFLETFRSDLIEKHIGRVD-FVQDNESKS-GYGVLRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ Q+KLVR + GR+ D+AVD+RR SP YG V+ + ++IP GFAHGF+ L
Sbjct: 66 PFTQSKLVRVVKGRVLDVAVDLRRGSPWYGKSVTCLLDDKRRSMLWIPKGFAHGFVVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+YK +Y+ E+D GV W D+++ I W L + + VS KD LP +D F Y
Sbjct: 126 EAVFVYKCDAYYAPEYDGGVRWNDETLGIDWQLSSSDI-RVSGKDALLPAFGDVDC-FAY 183
Query: 182 DGL 184
+
Sbjct: 184 EAF 186
>gi|329912057|ref|ZP_08275652.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oxalobacteraceae bacterium
IMCC9480]
gi|327545743|gb|EGF30878.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oxalobacteraceae bacterium
IMCC9480]
Length = 181
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 109/168 (64%), Gaps = 7/168 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ- 59
I V I++ F D RG+F ++++ + EL GL FVQDNHS S +RGLH+Q
Sbjct: 7 EIPDVLIIEPTVFGDERGFFFESFNQRRFFELTGLSVDFVQDNHSQSAK-NVLRGLHYQI 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P Q KLVR + G +FD+AVDIRR+SPT+G +V +E+SANN ++IP GFAHGF+ +
Sbjct: 66 QQP--QGKLVRVVQGVVFDVAVDIRRSSPTFGKYVGVELSANNKRMVWIPPGFAHGFVVM 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E +YK TD++ + +AW D SI I WP+ +P++SEKD+
Sbjct: 124 SEVAEFLYKTTDYWVPGFERSIAWNDPSIGIDWPIEG--VPTLSEKDR 169
>gi|325135201|gb|EGC57826.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
M13399]
gi|325205184|gb|ADZ00637.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
M04-240196]
Length = 179
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 99/164 (60%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLHYQTE- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L
Sbjct: 66 NTQGKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFYVLSDT 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E+ YK TD+Y E + + W D +I I WPL P++S KD
Sbjct: 126 AELTYKCTDYYKPEAEQVLIWNDPAIGIDWPLQGE--PNLSPKD 167
>gi|309780789|ref|ZP_07675530.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia sp. 5_7_47FAA]
gi|308920471|gb|EFP66127.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia sp. 5_7_47FAA]
Length = 183
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 98/152 (64%), Gaps = 7/152 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQ--RPP 62
V IL+ + F D+RG+F +++++K + G Q FVQDNHS S +RGLH+Q RP
Sbjct: 13 VLILEPKVFGDARGFFFESFNAKSFEVATGCQRAFVQDNHSRS-AHKVLRGLHYQVVRP- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR +AG +FD+AVD+R++SP +G W +SA N Q+++P GFAHGF+ L +
Sbjct: 71 --QGKLVRVVAGEVFDVAVDLRKSSPNFGKWAGAVLSAENKRQLWVPEGFAHGFVVLSDS 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
E +YK TD++ EH+ V W D I I WP
Sbjct: 129 AEFLYKTTDYWYPEHERSVLWNDSDIGIEWPF 160
>gi|271499224|ref|YP_003332249.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dickeya dadantii Ech586]
gi|270342779|gb|ACZ75544.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dickeya dadantii Ech586]
Length = 183
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 4/168 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
NI V+I++ F D RG+F +T+ K ++L G FVQDNHS S + +RGLH Q
Sbjct: 7 NIPDVKIIEPTVFGDERGFFMETWQQKKFEDLVVGHACSFVQDNHSKS-NKNILRGLHIQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVD+R++S T G WV + +SA N Q++IP GFAHGF
Sbjct: 66 TEN-TQGKLVRVVSGEVFDVAVDVRKDSATLGKWVGVYLSAENKRQLWIPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E +YK T++Y + + W D +DI WPLL+ P +S+KD+
Sbjct: 125 SEEAEFVYKCTNYYHPASEISILWSDSFLDIHWPLLNNQEPLLSDKDK 172
>gi|167763054|ref|ZP_02435181.1| hypothetical protein BACSTE_01420 [Bacteroides stercoris ATCC
43183]
gi|167699394|gb|EDS15973.1| hypothetical protein BACSTE_01420 [Bacteroides stercoris ATCC
43183]
Length = 182
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 109/165 (66%), Gaps = 4/165 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I+ V I++ + F D+RG+F + + + + + DV FVQDN S S G +RGLH+Q+
Sbjct: 8 IDGVWIIEPKVFNDARGYFMEAFKEEEFR-ANIGDVHFVQDNESKS-SFGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR I G++ D+AVD+RR+SPT+G +VS+E+S N Q +IP GFAHGF+ L
Sbjct: 66 EYSQAKLVRVIKGKVLDVAVDLRRSSPTFGKYVSVELSEENKRQFFIPRGFAHGFLVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YKV + Y+ + ++ + + D++I I WP+ ++ +SEKD
Sbjct: 126 EAIFTYKVDNGYAPQAEASIRFNDETIGIDWPVAESQFI-LSEKD 169
>gi|225025807|ref|ZP_03714999.1| hypothetical protein EUBHAL_00032 [Eubacterium hallii DSM 3353]
gi|224956891|gb|EEG38100.1| hypothetical protein EUBHAL_00032 [Eubacterium hallii DSM 3353]
Length = 203
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 99/182 (54%), Gaps = 18/182 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ DSRG+F +TY+ + E GL FVQDN S S G +RGLHFQ+
Sbjct: 12 GIEGLCIIEPTLHGDSRGYFMETYNKNDMAEAGLTMEFVQDNQSASTK-GVLRGLHFQKQ 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR I G +FD+ VD+R +S TYG W +SA N Q YIP GFAHGF+ L
Sbjct: 71 -HPQGKLVRVINGTVFDVVVDLRSHSGTYGKWFGEILSAENNKQFYIPEGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YK TDFY + G+AW D I I WP L D ++SEK
Sbjct: 130 TAEFCYKCTDFYHPGDEGGLAWNDPEIGIEWPELVGEYSGCATAKGYHLKDGTSLTLSEK 189
Query: 166 DQ 167
DQ
Sbjct: 190 DQ 191
>gi|53804351|ref|YP_113746.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylococcus capsulatus str.
Bath]
gi|53758112|gb|AAU92403.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylococcus capsulatus str.
Bath]
Length = 185
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 100/170 (58%), Gaps = 4/170 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V ++ + F D+RG+F +T+S + ++ GL FVQDN S+S G +RGLHFQ P Q
Sbjct: 11 VLLISPKVFGDARGYFKETWSRQRYQDAGLPGDFVQDNLSYSRK-GILRGLHFQNP-RPQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV+ + G +FD+AVDIR SP +G W +SA N LQ+Y+P GFAHGF L
Sbjct: 69 GKLVQVLQGEVFDVAVDIRYGSPHFGRWFGTVLSAENHLQMYVPEGFAHGFCVLTEAALF 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK T++Y + + W D I I WPL P +S KD++ P L +
Sbjct: 129 AYKCTEYYEPSSEFSLRWDDPDIGIAWPLDSA--PELSAKDRDAPRLRDL 176
>gi|239833694|ref|ZP_04682022.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ochrobactrum intermedium LMG
3301]
gi|239821757|gb|EEQ93326.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ochrobactrum intermedium LMG
3301]
Length = 181
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 107/172 (62%), Gaps = 3/172 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NI+ ++ + +D RGWF++ + E ++ F Q + SFS + GT+RGLH+Q
Sbjct: 13 LNIDGAWSIEPERLKDERGWFARVFCEGAFAERQMETHFPQHSLSFSREKGTLRGLHYQS 72
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+++ KLV C+ G I+D+ VD+R +SPTY W +E+SA NG+Q+YIP G AHGF TL
Sbjct: 73 EPHSETKLVTCLQGVIWDVLVDLRPHSPTYRRWTGVELSAENGVQLYIPEGCAHGFQTLT 132
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ V Y ++ Y+ ++ +G+ + D ++ I WP ++ +S+KD P L
Sbjct: 133 PDVLVRYMISKPYAPDYATGLRYDDPALGIPWPNRPSV---ISDKDLAWPLL 181
>gi|29725997|gb|AAO88928.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]
Length = 181
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 104/169 (61%), Gaps = 6/169 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPAVFGDERGFFMETWNQKRFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD VDIR++SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 TE-NTQGKLVRVVSGEVFDAPVDIRKDSPTFGKWVGVYLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK TD+Y+ + + W D I I WP+ I P +S KD++
Sbjct: 125 SDEAEFVYKCTDYYNPTAEHSLLWNDPDIGIEWPI--DIQPVLSAKDES 171
>gi|60682913|ref|YP_213057.1| putative LPS biosynthesis related dTDP-4-dehydrorhamnose
3,5-epimerase [Bacteroides fragilis NCTC 9343]
gi|253566043|ref|ZP_04843497.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_2_5]
gi|265766787|ref|ZP_06094616.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_16]
gi|60494347|emb|CAH09143.1| putative LPS biosynthesis related dTDP-4-dehydrorhamnose
3,5-epimerase [Bacteroides fragilis NCTC 9343]
gi|251945147|gb|EES85585.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_2_5]
gi|263253164|gb|EEZ24640.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_16]
gi|301164376|emb|CBW23934.1| putative LPS biosynthesis related dTDP-4-dehydrorhamnose
3,5-epimerase [Bacteroides fragilis 638R]
Length = 180
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 107/175 (61%), Gaps = 4/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V IL+ R F+D RG+F ++++ + +E + FVQDN S S G +RGLHFQ+ P
Sbjct: 8 IDGVVILEPRIFKDDRGYFFESFNQREFEEKVCKTTFVQDNESKS-SYGVLRGLHFQQAP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ+KLVR + G + D+AVDIR+ SPT+G V++E++ +N Q +IP G AHGF L
Sbjct: 67 FAQSKLVRVVKGAVLDVAVDIRKGSPTFGQHVAVELTEDNHRQFFIPRGLAHGFSVLSEE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQID 176
YK +FY+ + + W D + I W + D ++ +SEKD P L ++
Sbjct: 127 VVFQYKCDNFYAPHSEGAITWDDPDLGIDWRIPADRVI--LSEKDSRHPRLKDLN 179
>gi|261379149|ref|ZP_05983722.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria cinerea ATCC 14685]
gi|269144374|gb|EEZ70792.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria cinerea ATCC 14685]
Length = 185
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 98/164 (59%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++LK + F+D RG+F +T+ KE FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLKPQVFKDGRGFFMETFRDGWFKENIADRTFVQENHSKS-SKGVLRGLHYQTE- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L
Sbjct: 66 NTQGKLVRVVVGEVFDVAVDMREGSPTFGKWAGTTLSAQNQYQLWIPEGFAHGFYVLSDT 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E+ YK TD+Y + + + W D +I I WPL + P +S KD
Sbjct: 126 AELTYKCTDYYKPKAEQVLIWNDPAIGIGWPLQTS--PLLSPKD 167
>gi|292492257|ref|YP_003527696.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosococcus halophilus Nc4]
gi|291580852|gb|ADE15309.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosococcus halophilus Nc4]
Length = 181
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 102/164 (62%), Gaps = 7/164 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ-RPPY 63
V +++ R F D RG+F ++Y+ +Q FVQDNHS S +RGLH+Q R P
Sbjct: 11 VLLIEPRVFGDKRGFFFESYNKIAFAAATDIQAEFVQDNHSCSAR-HVLRGLHYQIRQP- 68
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
Q KLVR +AG +FD+AVD+RR+S ++G WV +SA N Q+++P GFAHGF+ L
Sbjct: 69 -QGKLVRVVAGEVFDVAVDLRRSSSSFGHWVGCHLSAENKHQLWVPEGFAHGFLVLSEYA 127
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E +YK TD+Y+ E++ + W D + I WPL P VS KDQ
Sbjct: 128 EFLYKTTDYYAPEYERCIRWDDPELAIDWPLEKA--PLVSTKDQ 169
>gi|91789857|ref|YP_550809.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Polaromonas sp. JS666]
gi|91699082|gb|ABE45911.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Polaromonas sp. JS666]
Length = 183
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 110/169 (65%), Gaps = 5/169 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +L+ + F D+RG+F ++++ +K +G Q FVQDNHS S +RGLH+Q
Sbjct: 6 LAIPDVILLEPQVFGDARGFFFESFNQAKFEAAIGRQASFVQDNHSRS-ARKVLRGLHYQ 64
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
+ P Q KLVR + G +FD+AVDIR++SPT+G WV +SA+N QI++P GFAHGF+
Sbjct: 65 VQQP--QGKLVRVVQGEVFDVAVDIRKSSPTFGQWVGEILSADNKRQIWVPEGFAHGFVV 122
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+ E +YK TD+Y+ E + +AW D +I I WPL P +S KDQ
Sbjct: 123 MSDTAEFLYKTTDYYAPEFERCIAWNDPAIGIQWPLPLNTPPLLSSKDQ 171
>gi|221639431|ref|YP_002525693.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides
KD131]
gi|221160212|gb|ACM01192.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides
KD131]
Length = 177
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 99/163 (60%), Gaps = 3/163 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ ED RGWF +T+ + + GL+ FVQ N S++ GT+RG+H+QR P+++ K
Sbjct: 13 LIEAEPREDHRGWFERTFCMEEMAGAGLKTGFVQHNSSYNHAAGTLRGMHYQRAPHSEVK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
++ C GRI D+ +D+R +SPTY W ++ A + Q+Y+P GFAHG++TLE T V Y
Sbjct: 73 VITCTRGRIQDVIIDLRPDSPTYLKWEGFDLKAGDHRQLYVPKGFAHGYLTLEDATAVSY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
V+ Y+ + GV W D + I W ++ +SEKD P
Sbjct: 133 LVSTAYTPGAEGGVRWDDPAFGIDWAAEVSV---ISEKDAAWP 172
>gi|319638873|ref|ZP_07993631.1| DTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase [Neisseria mucosa C102]
gi|317399777|gb|EFV80440.1| DTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase [Neisseria mucosa C102]
Length = 185
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 103/164 (62%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKS-SKGVLRGLHYQTE- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 71 NTQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y+ + + + W D ++ I WPL P++S KD
Sbjct: 131 AEFVYKCTDYYNPKAEHSLIWNDPTVGIDWPLQGE--PNLSPKD 172
>gi|315039055|ref|YP_004032623.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus amylovorus GRL
1112]
gi|312277188|gb|ADQ59828.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus amylovorus GRL
1112]
Length = 202
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 90/149 (60%), Gaps = 2/149 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F +T++ + + E G FVQDN S S G +RGLHFQ+ Y Q KLVR + G
Sbjct: 26 DDRGYFMETFNQRDMMEAGFSINFVQDNQSSS-TKGVLRGLHFQKH-YPQVKLVRAVRGS 83
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R NS TYG W +E++A N Q IP GFAHGF+ L E YKV DF+
Sbjct: 84 VFDVAVDLRSNSKTYGKWYGVELTAENKKQFLIPQGFAHGFLVLSDVAEFCYKVNDFWHP 143
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSE 164
+ G+AW D I I WP L P ++
Sbjct: 144 NDEGGMAWNDPEIGIEWPHLKGDYPGSAD 172
>gi|152980058|ref|YP_001353941.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Janthinobacterium sp.
Marseille]
gi|151280135|gb|ABR88545.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Janthinobacterium sp.
Marseille]
Length = 183
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 107/169 (63%), Gaps = 7/169 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQ- 59
I + +L+ D RG+F ++++ + E+ + V FVQDNHS S G +RGLH+Q
Sbjct: 9 KIPDILLLEPNVLGDDRGFFFESFNERRFAEVTGKTVKFVQDNHSRSLR-GVLRGLHYQI 67
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P Q KLVR ++G +FD+AVDIR++SPT+G W +SA N Q++IP GFAHGF+
Sbjct: 68 QQP--QGKLVRVVSGEVFDVAVDIRKSSPTFGQWAGAVLSAENQRQMWIPEGFAHGFVVT 125
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK TD+++ EH+ +AW D +I I WP+ +P +S KDQ
Sbjct: 126 SDTAEFLYKTTDYWAPEHERCIAWDDPAIGIDWPI--NGVPILSAKDQQ 172
>gi|218767237|ref|YP_002341749.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis Z2491]
gi|121051245|emb|CAM07520.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis Z2491]
Length = 190
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 101/164 (61%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCNRTFVQENHSKSGK-GVLRGLHYQTE- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 71 NTQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFCVLGDA 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
EV+YK TD+Y E + + W D ++ I WPL P +S KD
Sbjct: 131 AEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPL--QTAPLLSPKD 172
>gi|316983890|gb|EFV62869.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
H44/76]
gi|325133135|gb|EGC55806.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis M6190]
gi|325135185|gb|EGC57810.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
M13399]
gi|325141222|gb|EGC63721.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis CU385]
gi|325199289|gb|ADY94744.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
H44/76]
gi|325205165|gb|ADZ00618.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
M04-240196]
Length = 185
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 101/164 (61%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKS-GKGVLRGLHYQTE- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 NTQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y E + + W D ++ I WPL P +S KD
Sbjct: 126 AEFVYKCTDYYKPEAEQVLIWNDPTVGIGWPL--QTAPLLSPKD 167
>gi|91794011|ref|YP_563662.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella denitrificans
OS217]
gi|91716013|gb|ABE55939.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella denitrificans
OS217]
Length = 179
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 110/177 (62%), Gaps = 7/177 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQD--VFVQDNHSFSFDCGTIRGLHFQ 59
I V+I++ + D RG+F +T+ +E + FVQDNH+ S G +RGLH+Q
Sbjct: 7 KIPDVKIIEPLVYGDERGFFMETWRQNEFEEKVAKKPCSFVQDNHTKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
AQ KLVR ++G +FD+AVDIR++S TYG WV + +SA N Q+++P GFAHGF
Sbjct: 66 TEN-AQGKLVRVVSGEVFDVAVDIRKDSLTYGQWVGVYLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPF-LNQI 175
E +YK T++Y+ + + W DKS++I WPL+D P +S KD++L NQ+
Sbjct: 125 SDEAEFVYKCTEYYNPSSEVSIFWDDKSLNIHWPLIDR--PLLSSKDESLAIHFNQL 179
>gi|15676014|ref|NP_273144.1| dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase [Neisseria meningitidis
MC58]
gi|7225299|gb|AAF40545.1| dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase [Neisseria meningitidis
MC58]
gi|316985927|gb|EFV64866.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
H44/76]
Length = 184
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 103/164 (62%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKS-GKGVLRGLHYQTE- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 71 NTQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y+ + + + W D ++ I WPL P++S KD
Sbjct: 131 AEFVYKCTDYYNPKAEHSLIWNDPTVGIDWPLQGE--PNLSPKD 172
>gi|186477068|ref|YP_001858538.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia phymatum STM815]
gi|184193527|gb|ACC71492.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia phymatum STM815]
Length = 183
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 109/172 (63%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ + F D+RG+F ++++++ E V FVQDNHS S G +RGLH+Q +A
Sbjct: 13 VKIIEPKVFGDARGFFYESFNAREFAEKVEAGVEFVQDNHSRSAK-GVLRGLHYQ-IEHA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVD+R++SPT+G W + +S +N Q++IP GFAHGF+ L +
Sbjct: 71 QGKLVRVVEGEVFDVAVDVRKSSPTFGKWEGVLLSGDNHRQLWIPPGFAHGFVVLSEAAQ 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD++ EH+ + W D I I WP+ P ++ KD L++ +
Sbjct: 131 FLYKTTDYWFPEHERSIVWNDPEIGIEWPI--DFEPVLAAKDAAGKRLSEAE 180
>gi|218767221|ref|YP_002341733.1| dTDP-D-glucose 4,6-dehydratase [Neisseria meningitidis Z2491]
gi|121051229|emb|CAM07502.1| dTDP-D-glucose 4,6-dehydratase [Neisseria meningitidis Z2491]
Length = 184
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 101/164 (61%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCNRTFVQENHSKSGK-GVLRGLHYQTE- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 71 NTQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFCVLGDA 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
EV+YK TD+Y E + + W D ++ I WPL P +S KD
Sbjct: 131 AEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPL--QTAPLLSPKD 172
>gi|281419878|ref|ZP_06250877.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella copri DSM 18205]
gi|281406005|gb|EFB36685.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella copri DSM 18205]
Length = 184
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 106/169 (62%), Gaps = 3/169 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ R FED+RG+F + + + +G VFVQDN S S G +RGLH+Q
Sbjct: 6 IEIEGVWLIEPRVFEDARGYFFEAWKQADFDAHVGGHVVFVQDNESMS-ARGVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ ++QAKLVR I GR+ D+AVD+R+ S T+G +V +E+S N Q +IP GFAHGF+ L
Sbjct: 65 KGEFSQAKLVRVIKGRVLDVAVDLRKGSKTFGKYVMVELSGENKRQFFIPRGFAHGFLVL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YKV + Y+ ++++ + W D +I I WP ++ + SEKD+
Sbjct: 125 SDEAIFTYKVDNVYAPDYEASIHWDDPTIGIKWP-IEGVEVLTSEKDRT 172
>gi|257077381|ref|ZP_05571742.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ferroplasma acidarmanus fer1]
Length = 199
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 112/173 (64%), Gaps = 8/173 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+++ ++KF+D+RG+F + Y K+L++ +Q+ F Q N SFS RG HFQ P
Sbjct: 31 IKDVKLVNSKKFDDNRGFFEEVYREKILEDFNIQNKFSQVNLSFS-KKNVFRGFHFQLNP 89
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KL+ I+G+I D +D+R++S ++ C V EI++ G IYIP GFAHGF+ LE +
Sbjct: 90 ELQGKLITVISGKIIDYGIDLRKDSKSFKCHVEYEITS--GKMIYIPEGFAHGFLALE-D 146
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ V+Y T+ ++ DSG+ + DK ++I+ P D I+ +SEKD+ L LN++
Sbjct: 147 SYVLYLTTNEFNQSLDSGIRYDDKELNISLP--DNII--ISEKDKKLKHLNEL 195
>gi|330806983|ref|YP_004351445.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327375091|gb|AEA66441.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 181
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 106/172 (61%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V +++ + F D RG+F ++++++ E G FVQDNHS S G +RGLH+Q A
Sbjct: 11 VLVIEPKVFGDDRGFFYESFNARAFAEATGCTLQFVQDNHSRS-TRGVLRGLHYQ-IEQA 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR AG + D+AVDIRR+SPT+G W S+ +SA N Q+++P GFAHGF+ L + +
Sbjct: 69 QGKLVRVTAGEVLDVAVDIRRSSPTFGQWASVRLSAQNHRQMWVPPGFAHGFVVLSESAD 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD+Y+ + + W D + I W P +S KDQN L++ D
Sbjct: 129 FLYKTTDYYAPSAERCIRWDDPQLAIDWEFEGA--PILSAKDQNGKALHEAD 178
>gi|163789264|ref|ZP_02183706.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Flavobacteriales bacterium
ALC-1]
gi|159875479|gb|EDP69541.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Flavobacteriales bacterium
ALC-1]
Length = 181
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 103/164 (62%), Gaps = 3/164 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
I+K + +D RG+F + Y+ K E LG++ FVQDN S S G +RGLH+Q YAQA
Sbjct: 13 IIKPQVIKDKRGYFIENYNQKTFNEALGIEINFVQDNESLSTK-GVLRGLHYQLGKYAQA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR I G++ D+ VD+R S T+G +++E+S N +++P GFAHGF+ LE T
Sbjct: 72 KLVRVIKGKVLDVVVDLRPKSSTFGEHLTIELSEKNMTHLFVPRGFAHGFLVLENQTIFS 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
YK +FY+ ++G+ + DK ++I W L L +S KD+ LP
Sbjct: 132 YKCDNFYNKTSEAGIIYNDKDLNINWELSKKELI-ISNKDKILP 174
>gi|187926902|ref|YP_001893247.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia pickettii 12J]
gi|241665231|ref|YP_002983590.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia pickettii 12D]
gi|187728656|gb|ACD29820.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia pickettii 12J]
gi|240867258|gb|ACS64918.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia pickettii 12D]
Length = 197
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 103/177 (58%), Gaps = 8/177 (4%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F++ + + L G Q NHS+S GT+RGLHFQ PP+A+ KLV C+ GR
Sbjct: 24 DHRGYFTRFFCADELAAAGFDSPIAQINHSYSAKRGTVRGLHFQYPPHAEIKLVSCVRGR 83
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R SPT+ W ++E+SA + +P GFAHGF LE + E++Y + Y+
Sbjct: 84 VFDVAVDLRAGSPTFLQWHAVELSAERHNSLLVPRGFAHGFQALEDDCELLYLTSTPYAQ 143
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLPLLSLNME 192
+ G+ D + I WPL T S++D+N P L + G+ L +LN E
Sbjct: 144 AAEDGINPTDSRLGIAWPLDIT---ECSDRDRNHPPLTNA-----FAGIALRALNPE 192
>gi|325141237|gb|EGC63736.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis CU385]
gi|325199304|gb|ADY94759.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
H44/76]
Length = 179
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 103/164 (62%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKS-GKGVLRGLHYQTE- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 NTQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y+ + + + W D ++ I WPL P++S KD
Sbjct: 126 AEFVYKCTDYYNPKAEHSLIWNDPTVGIDWPLQGE--PNLSPKD 167
>gi|325270260|ref|ZP_08136867.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella multiformis DSM
16608]
gi|324987561|gb|EGC19537.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella multiformis DSM
16608]
Length = 184
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 109/168 (64%), Gaps = 3/168 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I+ V +++ + F D+RG+F +++ ++ +G F+QDN S S G +RGLH+Q+
Sbjct: 7 DIDGVWVIEPKVFNDARGYFFESFKQAEFDAHIGHHVEFIQDNESKS-GYGVLRGLHYQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
++QAKLVR I GR+ D+AVDIR+NSPT+G +V +E+S +N Q +IP GFAHGF+ L
Sbjct: 66 GDFSQAKLVRVIKGRVVDVAVDIRKNSPTFGRYVMVELSEDNKRQFFIPRGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YKV + Y+ + ++ + W D +I I WP +D +S+KD N
Sbjct: 126 DEAIFTYKVDNVYAPQAEASIRWNDGTIGIEWP-VDAKDVVLSDKDLN 172
>gi|30248687|ref|NP_840757.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosomonas europaea ATCC
19718]
gi|30180282|emb|CAD84589.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosomonas europaea ATCC
19718]
Length = 181
Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 109/172 (63%), Gaps = 8/172 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ-R 60
I V +++ + F D RG+F ++++ +E +G + FVQDNHS S +RGLH+Q +
Sbjct: 8 IPEVVLIEPKVFGDERGFFFESFNQARFEETVGREINFVQDNHSRSVK-NVLRGLHYQIQ 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q++IP GFAHGF+ L
Sbjct: 67 QP--QGKLVRVVQGEVFDVAVDLRKSSPTFGRWVGQVLSAENKHQLWIPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD-QNLPF 171
E +YK TD+Y+ H+ + W D ++I WPL I P +S KD Q PF
Sbjct: 125 DTAEFLYKTTDYYAPAHERCLLWNDPVLNIQWPL--GIAPVLSAKDTQGKPF 174
>gi|308388283|gb|ADO30603.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
alpha710]
Length = 190
Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 98/164 (59%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ KE FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDGWFKENIADCSFVQENHSKSGK-GVLRGLHYQTE- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L
Sbjct: 71 NTQGKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFYVLSDT 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
TE+ YK TD+Y E + + W D +I I WPL P +S KD
Sbjct: 131 TELTYKCTDYYKPEAEQVLIWNDPAIGIGWPL--QTAPLLSPKD 172
>gi|283795741|ref|ZP_06344894.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium sp. M62/1]
gi|291076679|gb|EFE14043.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium sp. M62/1]
Length = 201
Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 89/141 (63%), Gaps = 2/141 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG+F +TYS + ++E G+ FVQDN S S G +RGLHFQ+ + Q KLVR I G
Sbjct: 26 DARGYFMETYSQRDMEENGININFVQDNQSMSVK-GVLRGLHFQKN-FPQTKLVRVIKGS 83
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R S TYG W +E++ +N Q IP GFAHGF+ L E YK DFY
Sbjct: 84 VFDVAVDLRSGSETYGKWYGIELTEDNKKQFLIPRGFAHGFLVLSDTAEFCYKCDDFYHA 143
Query: 136 EHDSGVAWQDKSIDITWPLLD 156
+ G+AW D I I WP ++
Sbjct: 144 SDEGGLAWNDPEICIVWPKVE 164
>gi|171319432|ref|ZP_02908538.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria MEX-5]
gi|171095361|gb|EDT40340.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria MEX-5]
Length = 183
Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 107/172 (62%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ + F D+RG+F ++++ K E V FVQDNHS S G +RGLH+Q +A
Sbjct: 13 VKIIEPKVFGDARGFFYESFNGKEFAEQVEPGVEFVQDNHSRS-SKGVLRGLHYQIE-HA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVDIR+ SP +G WV + +S +N Q+++P GFAHGF+ L +
Sbjct: 71 QGKLVRVVEGEVFDVAVDIRKRSPNFGRWVGVILSNDNHRQLWVPPGFAHGFVVLSEAAQ 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD++ +H+ + W D I I WP+ P ++ KD LN+ D
Sbjct: 131 FLYKTTDYWFPKHERSLLWNDPEIGIEWPI--DFEPLLAAKDAAGKRLNEAD 180
>gi|325131106|gb|EGC53827.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
OX99.30304]
gi|325137129|gb|EGC59724.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis M0579]
gi|325201248|gb|ADY96702.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
M01-240149]
gi|325207107|gb|ADZ02559.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
NZ-05/33]
Length = 185
Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 98/164 (59%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ KE FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDGWFKENIADCSFVQENHSKSGK-GVLRGLHYQTE- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L
Sbjct: 66 NTQGKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFYVLSDT 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
TE+ YK TD+Y E + + W D +I I WPL P +S KD
Sbjct: 126 TELTYKCTDYYKPEAEQVLIWNDPAIGIGWPL--QTAPLLSPKD 167
>gi|238026393|ref|YP_002910624.1| DTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme [Burkholderia
glumae BGR1]
gi|237875587|gb|ACR27920.1| DTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme [Burkholderia
glumae BGR1]
Length = 183
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 104/162 (64%), Gaps = 5/162 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V++++ + F D+RG+F ++++++ + V FVQDNHS S G +RGLH+Q +A
Sbjct: 13 VKLIEPKVFGDARGFFYESFTAREFAASVCEGVEFVQDNHSRS-ARGVLRGLHYQIE-HA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVDIR++SP +G WV E+S N LQ+++P GFAHGF+ L +
Sbjct: 71 QGKLVRVVEGSVFDVAVDIRKHSPNFGKWVGAELSGENHLQMWVPPGFAHGFVVLSETAQ 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK TD++ E + + W D I I WP+ P ++ KD
Sbjct: 131 FLYKTTDYWYPEFERSIIWNDPEIGIEWPI--DFEPKLAAKD 170
>gi|189500840|ref|YP_001960310.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium phaeobacteroides
BS1]
gi|189496281|gb|ACE04829.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium phaeobacteroides
BS1]
Length = 197
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 100/160 (62%), Gaps = 2/160 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
+ D RG+F +++ +++E + FVQDN S S G +RGLHFQ+PP+ Q+KLVR I
Sbjct: 19 YGDERGYFFESFRKDIVEEHVGKVDFVQDNQSKS-GYGVLRGLHFQKPPFTQSKLVRVIE 77
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G + D+AVDIR SP YG +V++++ + +++P GFAHGF+ L YK ++Y
Sbjct: 78 GSVLDVAVDIREGSPWYGQYVAVKLDSQTNNMLWVPQGFAHGFIVLSKEAIFSYKCDNYY 137
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ E+D+G+ W D I I W + + + VSEKD PFL
Sbjct: 138 APEYDAGIKWNDPDIGIDWGIAEEQV-QVSEKDAGQPFLK 176
>gi|94972402|ref|YP_595620.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Lawsonia intracellularis
PHE/MN1-00]
gi|94731939|emb|CAJ53956.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Lawsonia intracellularis
PHE/MN1-00]
Length = 180
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 103/166 (62%), Gaps = 5/166 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V ++K + +EDSRG+F +T++ + E+GLQ FVQDNHS S T+RGLHFQ+
Sbjct: 7 SLEGVLLIKPKVWEDSRGYFLETWNKQRYIEIGLQLPFVQDNHSSS-TLHTLRGLHFQQQ 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLV G +FD+AVD+R NSPT+G W + +S N Q++IP G AHGF L
Sbjct: 66 -YPQGKLVSVSLGEVFDVAVDLRINSPTFGSWFGVILSEKNHYQMWIPPGLAHGFCVLSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
YK T++Y + +S + W D I I WP+ P++S KD+
Sbjct: 125 RAHFHYKCTEYYYPQDESCICWNDPDIGIDWPVQH---PNLSHKDK 167
>gi|323525016|ref|YP_004227169.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. CCGE1001]
gi|323382018|gb|ADX54109.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. CCGE1001]
Length = 183
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 100/150 (66%), Gaps = 3/150 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ + F D+RG+F +++++ + + + FVQDNHS S G +RGLH+Q +A
Sbjct: 13 VKIIEPKVFGDARGYFYESFNAVEFAEHVEAGVTFVQDNHSRSAK-GVLRGLHYQIQ-HA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVDIR++SP +G WV + +S N Q+++P GFAHGF+ L + +
Sbjct: 71 QGKLVRVVEGEVFDVAVDIRKSSPNFGKWVGVTLSVENHRQLWVPPGFAHGFVVLSESAQ 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
+YK TD++ EH+ + W D I I WP+
Sbjct: 131 FLYKTTDYWFPEHERSIVWNDPEIGIEWPI 160
>gi|48477383|ref|YP_023089.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Picrophilus torridus DSM
9790]
gi|48430031|gb|AAT42896.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Picrophilus torridus DSM
9790]
Length = 178
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 110/177 (62%), Gaps = 8/177 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+++K +KF+D RG+F + Y + + ELG+++ F Q N S+S RG HFQR P
Sbjct: 10 IEDVKLIKIKKFDDERGFFEELYRNNVFHELGIKNNFNQINLSYS-KKNVFRGFHFQRNP 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV I+GRI D A+D+RR S Y V E+ NG ++IP GFAHGF+ LE +
Sbjct: 69 KPQGKLVTVISGRIIDYAIDLRRRSVYYKKHVCYELE--NGRMLFIPEGFAHGFLALE-D 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ V+Y T+ + + DSGV + D ++I P D I+ +SEKD++L LN++D F
Sbjct: 126 SYVLYLATNEFDINLDSGVIYNDDELNIKLP--DNII--ISEKDRSLKKLNELDIDF 178
>gi|26987007|ref|NP_742432.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida KT2440]
gi|24981624|gb|AAN65896.1|AE016217_8 dTDP-4-dehydrorhamnose 3,5-epimerase family protein [Pseudomonas
putida KT2440]
Length = 181
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 108/173 (62%), Gaps = 10/173 (5%)
Query: 1 MNINP-----VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIR 54
MNI P V I++ + F DSRG+F + ++++ E G+ FVQDNHS S G +R
Sbjct: 1 MNIIPTAIPEVLIIEPKVFADSRGFFFEAFNAREFSEQTGVNVTFVQDNHSRSIK-GVLR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
GLH+Q Q KLVR + G I DIAVD+R++SPT+G WV++ +SA+N Q++IP GFAH
Sbjct: 60 GLHYQVA-NTQGKLVRVVHGEIRDIAVDVRKSSPTFGKWVAVHLSADNHRQLWIPPGFAH 118
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
GF + + E +YK TD+Y+ D + W D + I W L P +S+KD+
Sbjct: 119 GFAVMSESAEFLYKTTDYYNPGADRCIRWDDPQLAIDWGLQQP--PLLSDKDK 169
>gi|41033607|emb|CAF18470.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoproteus tenax]
Length = 187
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 108/181 (59%), Gaps = 4/181 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +++ F D RG+F++ Y G+ FVQ + S S G +RGLH+Q
Sbjct: 9 LEIPDVILIEPVVFPDHRGFFAELYKRTDFLAGGVPYDFVQVSVSMS-RRGVVRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLV + GR+ D+AVD+RR SP +G +V++E+SA+ ++IP GFAHGF LE
Sbjct: 68 KPAEQGKLVAVLRGRVLDVAVDVRRGSPWFGRYVAVELSADEPRLLWIPPGFAHGFQALE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T +Y +T YS +H+ V W D + I WP+ D IL SEKD+ P L + ++ FE
Sbjct: 128 DDTLFMYLMTKEYSPQHERCVRWDDPEVGIPWPIGDAIL---SEKDRRCPPLREAETNFE 184
Query: 181 Y 181
Y
Sbjct: 185 Y 185
>gi|307728805|ref|YP_003906029.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. CCGE1003]
gi|307583340|gb|ADN56738.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. CCGE1003]
Length = 183
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 105/162 (64%), Gaps = 5/162 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ + F D+RG+F ++++++ E DV FVQDNHS S G +RGLH+Q +A
Sbjct: 13 VKIIEPKVFGDARGFFYESFNAREFAEKVQPDVEFVQDNHSRSAK-GVLRGLHYQIQ-HA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR G +FD+AVDIR++SP +G W + +S +N Q++IP GFAHGF+ L +
Sbjct: 71 QGKLVRVTEGDVFDVAVDIRKSSPNFGKWEGVVLSGDNHRQLWIPPGFAHGFVVLSETAQ 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK TD++ EH+ + W D +I + WP+ P ++ KD
Sbjct: 131 FLYKTTDYWYPEHERSIVWNDPAIGVEWPI--DFEPVLAAKD 170
>gi|1098480|gb|AAC37051.1| rfbC [Neisseria meningitidis]
Length = 333
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 100/164 (60%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLHYQ-TE 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R SPT+G WV +SA N Q++IP GFAHGF L
Sbjct: 71 NTQGKLVRVVVGEVFDVAVDMREGSPTFGKWVGEILSAQNQCQLWIPEGFAHGFCVLGDA 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
EV+YK TD+Y E + + W D ++ I WPL P +S KD
Sbjct: 131 AEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPL--QTAPLLSPKD 172
>gi|282897183|ref|ZP_06305185.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein [Raphidiopsis
brookii D9]
gi|281197835|gb|EFA72729.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein [Raphidiopsis
brookii D9]
Length = 181
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 104/168 (61%), Gaps = 3/168 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ + D RG+F++T+ ++ E GL+ Q N SF+ GT+RG+H+Q P + K
Sbjct: 13 IIELEEKPDHRGFFARTFCAQEFAEHGLKPTVAQCNLSFNHQKGTLRGMHYQITPATETK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
L+RC G I+D+ VD+R SPTY ++ +E++A N +Y+P FAHG+ L EV+Y
Sbjct: 73 LIRCTQGAIYDVIVDMRPESPTYLSYIGVELTATNRCALYVPEMFAHGYQALTDGAEVVY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+V +FY+ ++ G+ + D +DI WPL T +S+KD++ P L +
Sbjct: 133 QVGEFYTPGYERGLRYDDPILDIVWPLNVT---EISQKDRSWPLLKSV 177
>gi|71276345|ref|ZP_00652622.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa Dixon]
gi|71901359|ref|ZP_00683453.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa Ann-1]
gi|170729450|ref|YP_001774883.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa M12]
gi|71162807|gb|EAO12532.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa Dixon]
gi|71728858|gb|EAO30995.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa Ann-1]
gi|167964243|gb|ACA11253.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa M12]
Length = 185
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 101/168 (60%), Gaps = 5/168 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ R F+D+RG F + ++++ + G+ FVQ N S S G +RGLH+Q P Q K
Sbjct: 13 VIEPRVFDDARGEFFEAWNAECFERQGMSSRFVQSNVSISM-YGVLRGLHYQWP-RPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G ++D+AVDIR SP YG WV++ +SA N Q++IP GFAHGF+ L Y
Sbjct: 71 LVGVLEGEVYDVAVDIRLGSPHYGRWVAVLLSAKNKRQLWIPEGFAHGFVVLSERAVFNY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
TD Y E D+G+ W D + + WP+ P +S KDQ PF+ ++
Sbjct: 131 LCTDVYVKEADAGIRWNDAVLGVDWPIAT---PLLSAKDQKAPFMEEV 175
>gi|308048796|ref|YP_003912362.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ferrimonas balearica DSM
9799]
gi|307630986|gb|ADN75288.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ferrimonas balearica DSM
9799]
Length = 181
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 103/165 (62%), Gaps = 2/165 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V I++ + F D RG+F +T+ ++ + FVQ+NHS S G +RGLH+Q
Sbjct: 7 HIADVVIIEPKVFGDDRGFFMETFRTEEFNKHCAVREFVQENHSKSAK-GVLRGLHYQ-T 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR ++G +FD+AVD+R +SPT+G WV +E+SA N Q+++P GFAHGF +
Sbjct: 65 ENTQGKLVRVVSGAVFDVAVDMRESSPTFGQWVGVELSAENKRQLWVPEGFAHGFYVMTD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD Y+ + + W D +++I WP+ PS+S KD
Sbjct: 125 EAEFVYKCTDVYNPNAEVSLRWDDPALNIEWPITVEQQPSLSGKD 169
>gi|146304599|ref|YP_001191915.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Metallosphaera sedula DSM
5348]
gi|145702849|gb|ABP95991.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Metallosphaera sedula DSM
5348]
Length = 176
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 109/180 (60%), Gaps = 15/180 (8%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ PV +++T ++ D RG+F + L +E FVQ NHSFS G +RGLHFQ P
Sbjct: 8 LGPVTLIETTQYPDDRGFFQE-----LFRESQFPCRFVQVNHSFS-RRGVLRGLHFQAMP 61
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV I GRI+D+AVD+RR + W +E++ G ++IP GFAHGF LE +
Sbjct: 62 VPQGKLVTVITGRIYDVAVDLRRG---FKGWAGVELTP--GKLLWIPPGFAHGFQALE-D 115
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
+ VIY VT +S +HD+GVAW D I + WPL + IL SEKD+ LP L + + F D
Sbjct: 116 SHVIYFVTREFSPQHDAGVAWDDPEIGVRWPLPNPIL---SEKDRKLPRLAESRANFPED 172
>gi|1073093|pir||D49906 rfbD homolog - Xanthomonas campestris pv. campestris
Length = 183
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 100/168 (59%), Gaps = 5/168 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ F D RG F +T++++ + GL FVQ N S S G +RGLH+Q P Q K
Sbjct: 11 VIEPAVFGDERGQFFETWNAERFGQHGLPTSFVQSNVSTSAR-GVLRGLHYQWP-RPQGK 68
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G ++D+AVDIR SP +G W ++ +SA N Q++IP GFAHGF L Y
Sbjct: 69 LVSVLEGEVYDVAVDIRAGSPHFGRWTAVLLSAENRRQVWIPEGFAHGFAVLSEKALFSY 128
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
TD Y E D+GV W D +I I WP+ D PS+S KD PFL+++
Sbjct: 129 LCTDVYVKEADAGVRWDDAAIGIDWPVSD---PSLSAKDAKAPFLDEV 173
>gi|21230098|ref|NP_636015.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66769911|ref|YP_244673.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas campestris pv.
campestris str. 8004]
gi|188993127|ref|YP_001905137.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas campestris pv.
campestris str. B100]
gi|14090389|gb|AAK53465.1|AF204145_5 dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas campestris pv.
campestris]
gi|21111625|gb|AAM39939.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66575243|gb|AAY50653.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas campestris pv.
campestris str. 8004]
gi|167734887|emb|CAP53099.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas campestris pv.
campestris]
Length = 185
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 100/168 (59%), Gaps = 5/168 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ F D RG F +T++++ + GL FVQ N S S G +RGLH+Q P Q K
Sbjct: 13 VIEPAVFGDERGQFFETWNAERFGQHGLPTSFVQSNVSTSAR-GVLRGLHYQWP-RPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G ++D+AVDIR SP +G W ++ +SA N Q++IP GFAHGF L Y
Sbjct: 71 LVSVLEGEVYDVAVDIRAGSPHFGRWTAVLLSAENRRQVWIPEGFAHGFAVLSEKALFSY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
TD Y E D+GV W D +I I WP+ D PS+S KD PFL+++
Sbjct: 131 LCTDVYVKEADAGVRWDDAAIGIDWPVSD---PSLSAKDAKAPFLDEV 175
>gi|167837611|ref|ZP_02464494.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia thailandensis
MSMB43]
Length = 183
Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 101/150 (67%), Gaps = 3/150 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ + F D+RG+F ++++++ E V FVQDNHS S G +RGLH+Q +A
Sbjct: 13 VKIIEPKVFGDARGFFFESFNAREFAEQVEAGVEFVQDNHSRS-AKGVLRGLHYQIR-HA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVDIR++SP +G WV + +SA N Q+++P GFAHGF+ L + +
Sbjct: 71 QGKLVRVVEGEVFDVAVDIRKSSPNFGKWVGVALSAENHRQLWVPPGFAHGFVVLSESAQ 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
+YK TD++ E + + W D +I I WP+
Sbjct: 131 FLYKTTDYWYPEFERSIVWNDPTIGIEWPI 160
>gi|187922882|ref|YP_001894524.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia phytofirmans
PsJN]
gi|187714076|gb|ACD15300.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia phytofirmans
PsJN]
Length = 183
Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 100/150 (66%), Gaps = 3/150 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ + F D+RG+F +++++K E V FVQDNHS S G +RGLH+Q A
Sbjct: 13 VKIIEPKVFGDARGFFFESFNAKEFAEQVEPGVEFVQDNHSRS-AKGVLRGLHYQVQ-NA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVDIR++SP +G W + +S +N Q+++P GFAHGF+ L + +
Sbjct: 71 QGKLVRVVEGEVFDVAVDIRKSSPNFGKWAGVVLSVDNHRQLWVPPGFAHGFVVLSESAQ 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
+YK TD++ EH+ + W D +I I WP+
Sbjct: 131 FLYKTTDYWYPEHERSIVWNDPAIGIEWPI 160
>gi|171184950|ref|YP_001793869.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoproteus neutrophilus
V24Sta]
gi|170934162|gb|ACB39423.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoproteus neutrophilus
V24Sta]
Length = 187
Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 107/181 (59%), Gaps = 4/181 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +++ F D RG+F++ Y G+ FVQ + S S G +RGLH+Q
Sbjct: 9 LEIPDVILIEPVVFPDQRGFFAELYKRTDFLAGGVPYDFVQVSVSMS-RRGVVRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLV + GR+ D+AVD+RR SP +G +V++E+SA+ ++IP GFAHGF LE
Sbjct: 68 KPAEQGKLVTVLRGRVLDVAVDVRRGSPWFGRYVAVELSADEPRLLWIPPGFAHGFQALE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
T +Y +T YS +H+ V W D + I WP+ D IL SEKD+ P L + ++ FE
Sbjct: 128 DGTLFMYLMTKEYSPQHERCVRWDDPEVGIPWPIGDAIL---SEKDRRCPPLREAETNFE 184
Query: 181 Y 181
Y
Sbjct: 185 Y 185
>gi|194290475|ref|YP_002006382.1| dtdp-4,deoxyrhamnose 3,5 epimerase [Cupriavidus taiwanensis LMG
19424]
gi|193224310|emb|CAQ70321.1| dTDP-4,deoxyrhamnose 3,5 epimerase [Cupriavidus taiwanensis LMG
19424]
Length = 183
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 108/172 (62%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ + F DSRG+F ++++ + +E +G + FVQDNHS S +RGLH+Q ++
Sbjct: 13 VLILEPKVFGDSRGFFFESFNQRDFEEAIGQRCTFVQDNHSRS-ARNVLRGLHYQ-IQHS 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVD+R++SP G WV + +SA N Q++IP GFAHGF+ E
Sbjct: 71 QGKLVRVVDGEVFDVAVDMRKSSPNLGKWVGVTLSAKNKRQLWIPAGFAHGFVVTSDVAE 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YKVTD++ EH+ + W D + I WP+ + P ++ KD L + D
Sbjct: 131 FLYKVTDYWHPEHERSLVWNDPHVGIEWPIDGS--PFLAAKDSAGKLLTEAD 180
>gi|332296014|ref|YP_004437937.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermodesulfobium narugense
DSM 14796]
gi|332179117|gb|AEE14806.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermodesulfobium narugense
DSM 14796]
Length = 181
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 106/168 (63%), Gaps = 4/168 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I+K++KF D+RG+F + + KE+G++ F QDN SFS G IRGLH+Q+
Sbjct: 9 GIEGLIIIKSKKFFDNRGYFQEIFKDSDFKEMGIELDFSQDNLSFS-KKGVIRGLHYQKA 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY QAKLV+C+ G IFD VD+RR+S T+G + ++ + ++ +++P GF HGF L
Sbjct: 68 PYGQAKLVKCVYGSIFDAVVDVRRDSKTFGKYFTVILHDSDDYLLFVPDGFLHGFCVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
V+YK + YS ++ SGV + D+ + I WP+ + P +S +D L
Sbjct: 128 FALVLYKTSSEYSPKNSSGVIYNDQFLSIPWPVEN---PIISPQDAGL 172
>gi|255305246|ref|ZP_05349418.1| dTDP-glucose 4,6-dehydratase [Clostridium difficile ATCC 43255]
Length = 525
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ F D RG+F ++Y+ K E GL F+QDN S S G +RG+HFQ
Sbjct: 11 IEGLYIVEPNVFYDERGYFMESYNKKDFIEQGLDMCFIQDNESSS-RKGVLRGMHFQ-VK 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q KLVR G +FD+AVD+R++S T+G W + +S N Q YIP GFAHGF+ L
Sbjct: 69 YPQGKLVRVTEGEVFDVAVDLRKDSQTFGKWEGVILSDKNKKQFYIPEGFAHGFLVLSEK 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
YK T++Y E ++G W DK I I WPL +SEKD+ L
Sbjct: 129 AVFSYKCTNYYYPEFENGFIWNDKQISIEWPLKGIEEIFLSEKDKKQKVL 178
>gi|307321335|ref|ZP_07600734.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium meliloti AK83]
gi|306892980|gb|EFN23767.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium meliloti AK83]
Length = 179
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 102/166 (61%), Gaps = 3/166 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ ++ D RG+FS+ + L++ G Q NH+ + GTIRG+HFQRPP+ +AK
Sbjct: 16 VIERKQMGDERGFFSRFFCRDELRDFGADGTIAQINHTLTRATGTIRGMHFQRPPHDEAK 75
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
V C+AG +FD+AVDIR +SPTY W +SA N + IP GFAHGF TL + E++Y
Sbjct: 76 FVSCLAGAVFDVAVDIRPDSPTYLQWHGEILSAENARSMLIPGGFAHGFQTLSDSCELVY 135
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
Y+ + +SG+ D + I+WPL + +SE+D+ F++
Sbjct: 136 LHDKPYAPDAESGLNPLDPRLAISWPLE---VAQMSERDRAFAFIS 178
>gi|167031308|ref|YP_001666539.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida GB-1]
gi|166857796|gb|ABY96203.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida GB-1]
Length = 181
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 109/173 (63%), Gaps = 10/173 (5%)
Query: 1 MNINP-----VRILKTRKFEDSRGWFSQTYSSK-LLKELGLQDVFVQDNHSFSFDCGTIR 54
MNI P V I++ + F DSRG+F + ++++ ++ G+ FVQDNHS S G +R
Sbjct: 1 MNIIPTAIPEVLIIEPKVFGDSRGFFFEAFNAREFARQTGVNVEFVQDNHSRSIK-GVLR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
GLH+Q Q KLVR + G I DIAVD+R++SPT+G WV++ +SA+N Q++IP GFAH
Sbjct: 60 GLHYQVA-NTQGKLVRVVHGEIRDIAVDVRKSSPTFGQWVAVHLSADNHRQLWIPPGFAH 118
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
GF + + E +YK TD+Y+ D + W D + I W L P +S+KD+
Sbjct: 119 GFAVMSESAEFLYKTTDYYNPGADRCIRWDDPQLGIDWGLRQP--PVLSDKDK 169
>gi|282900183|ref|ZP_06308139.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein
[Cylindrospermopsis raciborskii CS-505]
gi|281194932|gb|EFA69873.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein
[Cylindrospermopsis raciborskii CS-505]
Length = 181
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 104/168 (61%), Gaps = 3/168 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ + D RG+F++T+ ++ E GL+ Q N SF+ GT+RG+H+Q P + K
Sbjct: 13 IIELEEKPDHRGFFARTFCAQEFAEHGLKPTVAQCNLSFNHQKGTLRGMHYQITPATETK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
L+RC G I+D+ VD+R SPTY ++ +E++A N +Y+P FAHG+ L EV+Y
Sbjct: 73 LIRCTQGAIYDVIVDMRPESPTYLSYIGVELTATNRRALYVPEMFAHGYQALTDGAEVVY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+V +FY+ ++ G+ + D +DI WPL T +S+KD++ P L +
Sbjct: 133 QVGEFYTPGYERGLRYDDPILDIVWPLNVT---EISQKDRSWPLLESV 177
>gi|170692120|ref|ZP_02883284.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia graminis C4D1M]
gi|170143404|gb|EDT11568.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia graminis C4D1M]
Length = 183
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 101/150 (67%), Gaps = 3/150 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ + F D+RG+F +++++ + + + FVQDNHS S G +RGLH+Q +A
Sbjct: 13 VKIIEPKVFGDARGYFYESFNAVEFAEHVEAGVTFVQDNHSRSAK-GVLRGLHYQIQ-HA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVDIR++SP +G WV + +S N Q+++P GFAHGF+ L + +
Sbjct: 71 QGKLVRVVEGEVFDVAVDIRKSSPNFGKWVGVTLSMENHRQLWVPPGFAHGFVVLSESAQ 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
+YK TD++ EH+ + W D +I I WP+
Sbjct: 131 FLYKTTDYWFPEHERSILWNDPAIGIKWPV 160
>gi|295675698|ref|YP_003604222.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. CCGE1002]
gi|295435541|gb|ADG14711.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. CCGE1002]
Length = 183
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 100/150 (66%), Gaps = 3/150 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ + F D+RG+F +++++ E V FVQDNHS S G +RGLH+Q +A
Sbjct: 13 VKIIEPKVFGDARGFFFESFNALEFAEKVEAGVEFVQDNHSRS-ARGVLRGLHYQ-IQHA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVDIR++SP +G WV + +S N Q+++P GFAHGF+ L + +
Sbjct: 71 QGKLVRVVEGEVFDVAVDIRKSSPNFGKWVGVTLSVENHRQLWVPPGFAHGFVVLSESAQ 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
+YK TD++ EH+ + W D +I I WP+
Sbjct: 131 FLYKTTDYWFPEHERSIVWNDPAIGIEWPI 160
>gi|86130453|ref|ZP_01049053.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dokdonia donghaensis MED134]
gi|85819128|gb|EAQ40287.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dokdonia donghaensis MED134]
Length = 184
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 104/171 (60%), Gaps = 3/171 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
I + FED RG+F +++++K G + FVQDN S S G +RGLHFQ +AQ+
Sbjct: 13 ICTPKVFEDDRGYFYESFNAKAFHSFAGFEPEFVQDNQSQS-TYGVLRGLHFQIGEFAQS 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR +AG + D+ VD+R+N PTY S+ +SA N Q+++P G AHGF+TL I
Sbjct: 72 KLVRVVAGEVLDVVVDLRKNEPTYKKAYSIHLSAENKKQLFVPKGMAHGFVTLSDTATFI 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
YK ++Y+ E + G+A+ D S+ I W LLD +SEKD+ L + S
Sbjct: 132 YKCDNYYNKESERGLAYNDPSLQIDW-LLDKQDVILSEKDKENTMLADLPS 181
>gi|330816479|ref|YP_004360184.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia gladioli BSR3]
gi|327368872|gb|AEA60228.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia gladioli BSR3]
Length = 183
Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 106/164 (64%), Gaps = 9/164 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQ--RPP 62
V+I++ F D+RG+F ++++++ +E Q FVQDNHS S G +RGLH+Q RP
Sbjct: 13 VKIIEPAVFGDTRGFFYESFNAREFEESVAQGFEFVQDNHSRSMR-GVLRGLHYQIVRP- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR +AG +FD+AVD+R +SP +G W + +SA N Q++IP GFAHGF+ L ++
Sbjct: 71 --QGKLVRVVAGEVFDVAVDLRLSSPHFGKWAGVRLSAKNYRQLWIPPGFAHGFVVLSVS 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD++ E++ + W D I I WP+ P ++ KD
Sbjct: 129 AEFVYKATDYWFPEYERSLLWSDPMIKIDWPIEQA--PLLAAKD 170
>gi|167570967|ref|ZP_02363841.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia oklahomensis
C6786]
Length = 183
Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 109/164 (66%), Gaps = 9/164 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE---LGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
V+I++ + F D+RG+F ++++++ E G++ F+QDNHS S G +RGLH+Q
Sbjct: 13 VKIIEPKVFGDARGFFFESFNAREFAEQVDAGVE--FIQDNHSRS-AKGVLRGLHYQIQ- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVR + G +FD+AVDIR++SP +G WV + +SA+N Q+++P GFAHGF+ L
Sbjct: 69 HAQGKLVRVVGGEVFDVAVDIRKSSPNFGKWVGVVLSADNHRQLWVPPGFAHGFVVLSDA 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ +YK TD++ E + +AW D +I I WP+ P ++ KD
Sbjct: 129 AQFLYKTTDYWFPEFERSIAWNDPAIGIDWPI--DFEPLLAAKD 170
>gi|85860475|ref|YP_462677.1| CDP-4-dehydro-6-deoxy-D-glucose 3-epimerase [Syntrophus
aciditrophicus SB]
gi|85723566|gb|ABC78509.1| CDP-4-dehydro-6-deoxy-D-glucose 3-epimerase [Syntrophus
aciditrophicus SB]
Length = 201
Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 103/166 (62%), Gaps = 3/166 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ + EDSRG+F + + ++ + GL Q NH+++ + GT+RGLHFQ PP+A+ K
Sbjct: 31 IVQRKPIEDSRGFFCRFFCAEEFQTAGLNRPIAQINHTYTVNKGTVRGLHFQHPPHAEIK 90
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
+V C+ G ++D+AVDIR++SPT+ W +S N +IP GFAHGF L N E++Y
Sbjct: 91 IVSCLQGEVYDVAVDIRKDSPTFLRWHGEILSVANQKSFFIPEGFAHGFQALTENCELLY 150
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
++ + + + G+ +D I I WP+ + +S++D PF+N
Sbjct: 151 LHSEAFHPQAEGGLHVEDPKIGIAWPI---AVKELSQRDCAYPFIN 193
>gi|295110606|emb|CBL24559.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruminococcus obeum A2-162]
Length = 189
Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I ++++ F D RG+F +TY+ K G+ FVQDN S S G +RGLHFQ
Sbjct: 10 HIEGLKVITPTVFGDERGYFMETYNYNDYKAAGIDMEFVQDNQSSS-RKGVLRGLHFQ-I 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR ++G +FD+AVD+R S TYG W + +SA N Q +IP FAHGF+ L
Sbjct: 68 NYPQDKLVRVVSGEVFDVAVDLREGSATYGQWYGVLLSAENKKQFFIPKNFAHGFVVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E YK TDFY + G+A+ D I + WP+ + + +S+KDQ
Sbjct: 128 TAEFAYKCTDFYHPNDEGGLAYNDPDIGVEWPIPEGMELILSDKDQ 173
>gi|284799482|ref|ZP_05984100.2| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria subflava NJ9703]
gi|284797991|gb|EFC53338.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria subflava NJ9703]
Length = 184
Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 102/164 (62%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCDRTFVQENHSKS-SKGVLRGLHYQTE- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 71 NTQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y+ + + + W D ++ I WPL P++S KD
Sbjct: 131 AEFVYKCTDYYNPKAEHSLIWNDPTVGIDWPLQGE--PNLSPKD 172
>gi|255099388|ref|ZP_05328365.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile
QCD-63q42]
Length = 185
Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 97/167 (58%), Gaps = 2/167 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ F D RG+F ++Y+ K E GL F+QDN S S G +RG+HFQ
Sbjct: 10 KIEGLYIVEPNVFYDERGYFMESYNKKDFIEQGLDMCFIQDNESSS-RKGVLRGMHFQ-V 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR G +FD+AVD+R++S T+G W + +S N Q YIP GFAHGF+ L
Sbjct: 68 KYPQGKLVRVTEGEVFDVAVDLRKDSQTFGKWEGVILSDKNKKQFYIPEGFAHGFLVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YK T++Y E ++G W DK I I WPL +SEKD+
Sbjct: 128 KAVFSYKCTNYYYPEFENGFIWNDKQISIEWPLKGIEEIFLSEKDKK 174
>gi|220910533|ref|YP_002485844.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 7425]
gi|219867144|gb|ACL47483.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 7425]
Length = 181
Score = 137 bits (345), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 104/167 (62%), Gaps = 3/167 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I+ + D RG+F++TY ++ E GL+ Q N S+++ GT+RG+H+Q P + K
Sbjct: 13 IIDVEQRWDDRGFFARTYCAQEFLEQGLKPTIAQTNISYNYQKGTLRGMHYQTSPATEVK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
+VRC G I+D+ +D+R +SPTY + +E++A N +YIP FAHG+ TL + EV Y
Sbjct: 73 VVRCTWGAIYDVIIDMRPDSPTYLSHIGVELTAENHRALYIPEMFAHGYQTLTDDAEVSY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
V++FY+ ++ GV + D +I I WPL + +S+KD + P L Q
Sbjct: 133 LVSEFYAPGYERGVRYDDPAIGIAWPLPVKV---ISDKDAHWPLLQQ 176
>gi|160881796|ref|YP_001560764.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium phytofermentans
ISDg]
gi|160430462|gb|ABX44025.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium phytofermentans
ISDg]
Length = 182
Score = 137 bits (345), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 103/174 (59%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ + +++ F+D+RG+F +TY + + G+ F+QDN S S G +RGLHFQ
Sbjct: 10 GIDGLFVIEPTIFKDNRGYFIETYHKEAYEAAGITAEFIQDNQSMS-KKGVLRGLHFQ-I 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y QAKLVR ++G +FD+AVD+R+ S T+G W + +S N Q ++P GFAHG++ L
Sbjct: 68 NYPQAKLVRVLSGEVFDVAVDLRKGSKTFGKWYGVVLSEENQKQFFVPEGFAHGYLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK TDFY D G+ W D + I WP+ + + ++++DQ L I
Sbjct: 128 TAVFAYKCTDFYHPGDDGGLLWNDPEVGIEWPIPEDMDLVIAQRDQEWGTLADI 181
>gi|312127312|ref|YP_003992186.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Caldicellulosiruptor
hydrothermalis 108]
gi|311777331|gb|ADQ06817.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caldicellulosiruptor
hydrothermalis 108]
Length = 202
Score = 137 bits (345), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 101/178 (56%), Gaps = 8/178 (4%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
ED RG F + Y++ + L + + S IRGLHFQ PPY AK+V C+ G
Sbjct: 22 EDQRGMFVKIYNTDFYSSILLNTSIKESYFTISHK-NVIRGLHFQLPPYEVAKIVCCVEG 80
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
I D+ VD+R SPTYG + +SA +YIP G AHG+ L VIY VT+ YS
Sbjct: 81 EIMDVVVDLREGSPTYGKYDIFYLSAEKSNILYIPEGLAHGYCVLSEKAIVIYNVTNVYS 140
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLPLLSLNME 192
EHD+G+ W S+ I WP+ + IL SEKD+NLP +PF+Y G +++N+E
Sbjct: 141 KEHDTGIRWD--SVGIPWPVDNPIL---SEKDKNLPEFKYFHTPFKYKG--YVNINVE 191
>gi|270339785|ref|ZP_06006012.2| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella bergensis DSM
17361]
gi|270333816|gb|EFA44602.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella bergensis DSM
17361]
Length = 211
Score = 137 bits (345), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 109/181 (60%), Gaps = 4/181 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V I++ + F+D RG+F ++++ K E FVQDN S S G +RGLHFQR
Sbjct: 29 SIEGVVIIEPKIFKDDRGYFYESWNQKEFDEKVRPIRFVQDNQSKS-SYGVLRGLHFQRG 87
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
++Q+KLVR ++G + D+AVDIR+ SPT+G V++E++ +N Q +IP GFAHGF L
Sbjct: 88 THSQSKLVRVVSGSVLDVAVDIRKGSPTFGQHVAVELTGDNHRQFFIPRGFAHGFSVLSE 147
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFE 180
YK + Y E + +AW D ++ I W + D ++ +SEKD P L + F+
Sbjct: 148 TAIFQYKCDNLYCKESEGAIAWNDPALGIDWRIPADKVI--LSEKDACHPLLEEATDLFD 205
Query: 181 Y 181
Y
Sbjct: 206 Y 206
>gi|281354883|ref|ZP_06241377.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Victivallis vadensis ATCC
BAA-548]
gi|281317763|gb|EFB01783.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Victivallis vadensis ATCC
BAA-548]
Length = 184
Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 93/152 (61%), Gaps = 1/152 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++++ R F DSRG+F + Y L G+ F+QDN SFS G +RGLH+Q PP
Sbjct: 8 IAGVKVIEPRLFGDSRGYFFEAYRKDLFAGAGIDARFIQDNESFS-TGGVLRGLHYQIPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y QAKLVR ++GR+ D+ VDIR SPT+G V++E+S + Q+++P G AHGF L
Sbjct: 67 YTQAKLVRVVSGRVLDVVVDIRLGSPTFGKHVAIELSGESKRQLFLPRGMAHGFAVLSPE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
+YK +FY + + + D ++ I W L
Sbjct: 127 AVFVYKCDNFYCPASERCIRFDDPALGIDWRL 158
>gi|313747666|gb|ADR74245.1| RmlC [Escherichia coli]
Length = 181
Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 102/163 (62%), Gaps = 5/163 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ + F D+RG+F +TY + +E+G+ + FVQDN S S G +RGLHFQ Q K
Sbjct: 13 VIEPKVFRDARGFFVETYQKEKYQEIGITEDFVQDNRSRSAK-GVLRGLHFQTNQ-PQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV +G ++D+AVD+R S T+G + L +SA Q+YIP GFAHGF L + + +Y
Sbjct: 71 LVSVTSGAVYDVAVDLRPESATFGSYFGLVLSAELNNQLYIPPGFAHGFCVLSDSADFLY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
K T +Y+ +SG+ W D ++ I WP+ + P +SEKD LP
Sbjct: 131 KCTQYYNPASESGIQWNDPTLKINWPISN---PFISEKDSTLP 170
>gi|254516003|ref|ZP_05128063.1| dTDP-4-dehydrorhamnose 3,5-epimerase [gamma proteobacterium NOR5-3]
gi|219675725|gb|EED32091.1| dTDP-4-dehydrorhamnose 3,5-epimerase [gamma proteobacterium NOR5-3]
Length = 182
Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 100/163 (61%), Gaps = 2/163 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +L F D RG+F +++++++ ++ G FVQDNHS S G +RGLH+Q + Q
Sbjct: 11 VYLLTPSVFGDERGFFVESWNAEVFRDAGFDLNFVQDNHSRSAQ-GILRGLHYQTN-HTQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR +G +FD+AVD+RR+SPT G W + + A + +++P GFAHGF +
Sbjct: 69 GKLVRVTSGSVFDVAVDMRRDSPTLGQWYGVTLDAKSQQMLWVPPGFAHGFYVTSEFADF 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YK TD Y + + +AW D SI I WPL++ PS+S KDQ
Sbjct: 129 QYKCTDKYDPKSEVSIAWDDPSIGIEWPLIEGKAPSLSAKDQT 171
>gi|225077086|ref|ZP_03720285.1| hypothetical protein NEIFLAOT_02139 [Neisseria flavescens
NRL30031/H210]
gi|241758982|ref|ZP_04757094.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria flavescens SK114]
gi|224951643|gb|EEG32852.1| hypothetical protein NEIFLAOT_02139 [Neisseria flavescens
NRL30031/H210]
gi|241320803|gb|EER57036.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria flavescens SK114]
Length = 184
Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 102/164 (62%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCDRTFVQENHSKS-GKGVLRGLHYQTE- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 71 NTQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y+ + + + W D ++ I WPL P++S KD
Sbjct: 131 AEFVYKCTDYYNPKAEHSLIWNDPTVGIDWPLQGE--PNLSPKD 172
>gi|320535548|ref|ZP_08035648.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Treponema phagedenis F0421]
gi|320147609|gb|EFW39125.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Treponema phagedenis F0421]
Length = 181
Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 102/169 (60%), Gaps = 5/169 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ + ++ + F D+RG+F +++S K G+ FVQDN S S G +RGLHFQ
Sbjct: 10 IDGLYKIQPKIFSDNRGYFFESWSKKEFAAAGITYDFVQDNQSKSLK-GVLRGLHFQNE- 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR ++G +FD+AVDIR+NS ++G W + +SA Q +I GFAHGF+ L
Sbjct: 68 HPQGKLVRVLSGEVFDVAVDIRKNSSSFGKWFGVILSAEKQNQFFISPGFAHGFLVLSDE 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSV-SEKDQNLP 170
YK TDFY E + G+ W D +I I WP LD +P + SEKD P
Sbjct: 128 AIFAYKCTDFYHPEDEGGIMWNDPAIGIEWPKLD--VPYILSEKDTKYP 174
>gi|218671520|ref|ZP_03521190.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhizobium etli GR56]
Length = 180
Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 97/159 (61%), Gaps = 3/159 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++T+ ++ GL V+ Q N S + GT+RG+H+Q P +AKLVR + GR
Sbjct: 21 DDRGMFARTFCAESFTAHGLASVYPQCNLSQNHRRGTLRGMHYQADPKPEAKLVRAVRGR 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+A+D+RR SPTY W S+E+ A + YIP G AHGF+TLE + E+ Y++++ Y
Sbjct: 81 VFDVALDLRRESPTYLKWASVELDATSRNAFYIPAGCAHGFLTLEDDCELFYQMSEIYVP 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E GV W D + I WP ++ +SE+D L Q
Sbjct: 141 ELARGVRWDDPAFSIAWPFTPSV---ISERDVALASYRQ 176
>gi|282892107|ref|ZP_06300582.1| hypothetical protein pah_c207o037 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281498002|gb|EFB40346.1| hypothetical protein pah_c207o037 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 164
Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 101/164 (61%), Gaps = 7/164 (4%)
Query: 14 FEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ-RPPYAQAKLVRC 71
F D+RG+F ++Y +S +E+G FVQDNHS S G +RGLH+Q + P Q KLVR
Sbjct: 2 FRDARGFFLESYRASDFAQEIGAHKAFVQDNHSHSLQ-GVLRGLHYQYKKP--QGKLVRV 58
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
+ G IFD+AVD+R++SPTYG WV +SA ++IP FAHGF+ L + +V+YK TD
Sbjct: 59 VTGEIFDVAVDLRQSSPTYGKWVGRHLSAERPCSMWIPPEFAHGFLVLSSHADVLYKTTD 118
Query: 132 FYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+Y + + W D + I WPL P +S+KD + ++
Sbjct: 119 YYDPSSEFCLRWNDPQLAINWPLQQP--PMLSKKDTDGKLFKEL 160
>gi|92118278|ref|YP_578007.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrobacter hamburgensis X14]
gi|91801172|gb|ABE63547.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrobacter hamburgensis X14]
Length = 183
Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 99/167 (59%), Gaps = 3/167 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+ ++ D+RG FS+ + + L Q N S + G IRG+H+Q P A+ K
Sbjct: 13 VTESLALGDARGKFSRIFCERELAAAVGARTIRQANVSSTAVVGAIRGMHYQHAPRAEMK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
+VRCI GR+FD+AVD+RR SPT+ W E+S NG+ IP G AHGF LE N+ ++Y
Sbjct: 73 IVRCIQGRVFDVAVDLRRGSPTFLHWHGAELSQENGMAFIIPEGCAHGFQVLEPNSSLLY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
T+FYS EH++GV D + I WPL T ++S +D + P L++
Sbjct: 133 FHTEFYSPEHEAGVRHDDPRVAIAWPLPPT---NLSVRDASHPPLDE 176
>gi|117621524|ref|YP_858587.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117562931|gb|ABK39879.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 187
Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 99/168 (58%), Gaps = 3/168 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
R+L+ DSRG S+ + ++ L LG + Q N +++ CGTIRGLH+Q PPYA+
Sbjct: 14 ARLLQREVCGDSRGTLSRLFCAEELAMLGWKSCIAQVNLTYTSRCGTIRGLHYQHPPYAE 73
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV CI GRI+D+ VDIR +SPT+ W + E+S +N + IP GFAHGF TL E+
Sbjct: 74 KKLVTCIQGRIWDVIVDIRADSPTFLQWYAEELSDDNHRSLLIPEGFAHGFQTLSDEVEI 133
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+Y + + + G+ D + I+WPL T +S +D P LN
Sbjct: 134 LYCHSAVHVPAAEGGLCPLDPRLQISWPLPIT---EISARDHQHPVLN 178
>gi|298370183|ref|ZP_06981499.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria sp. oral taxon 014
str. F0314]
gi|298281643|gb|EFI23132.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria sp. oral taxon 014
str. F0314]
Length = 179
Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 101/164 (61%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPEVKLLEPQVFGDARGFFMETFRDEWFKANVCDRTFVQENHSKS-GKGVLRGLHYQTE- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G W +SA N Q+++P GFAHGF L
Sbjct: 66 NTQGKLVRVVVGEVFDVAVDMRKSSPTFGKWAGEILSAENKRQLWVPEGFAHGFYVLSDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y+ + + + W D S+ I WPL P++S KD
Sbjct: 126 AEFVYKCTDYYNPKAEHSLIWNDPSVGINWPLQGE--PNLSPKD 167
>gi|52840993|ref|YP_094792.1| dTDP-6-deoxy-D-glucose-3,5-epimerase RmlC [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|54296783|ref|YP_123152.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Legionella pneumophila str.
Paris]
gi|52628104|gb|AAU26845.1| dTDP-6-deoxy-D-glucose-3,5-epimerase RmlC [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|53750568|emb|CAH11970.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Legionella pneumophila str.
Paris]
gi|307609552|emb|CBW99052.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Legionella pneumophila 130b]
Length = 187
Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 106/177 (59%), Gaps = 5/177 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ ++I++ + + D RG+F +++ +K +EL G+ D FVQDN S S G +RGLH+Q
Sbjct: 7 QIDELKIIEPKIYGDERGFFYESFQAKRYEELLGITDRFVQDNFSRS-QKGVLRGLHYQS 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLV +AG +FD+AVDIR SPT+G WV + +S N Q +IP GFAHGF L
Sbjct: 66 QQ-TQGKLVSVLAGEVFDVAVDIRLGSPTFGQWVGVILSGENKRQFWIPKGFAHGFYVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ YK TD+Y E + + + D + I WPL + + +S KD LN ID+
Sbjct: 125 AMADFAYKCTDYYHPESEFSIHYLDPQLAIDWPLGEQV--QLSPKDAAAKLLNLIDA 179
>gi|296163282|ref|ZP_06846044.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. Ch1-1]
gi|295886464|gb|EFG66320.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. Ch1-1]
Length = 183
Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 101/152 (66%), Gaps = 3/152 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ + F D+RG+F +++++K E + FVQDNHS S G +RGLH+Q A
Sbjct: 13 VKIIEPKVFGDARGFFFESFNAKEFAEQVEPGAEFVQDNHSRS-AKGVLRGLHYQVQ-NA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVDIR++SP +G W + +S +N Q+++P GFAHGF+ L + +
Sbjct: 71 QGKLVRVVEGEVFDVAVDIRKSSPNFGKWAGVVLSVDNHRQLWVPPGFAHGFVVLSESAQ 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD 156
+YK TD++ EH+ + W D +I I WP+ D
Sbjct: 131 FLYKTTDYWYPEHERSIVWNDPTIGIGWPIDD 162
>gi|256843714|ref|ZP_05549202.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus crispatus
125-2-CHN]
gi|256615134|gb|EEU20335.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus crispatus
125-2-CHN]
Length = 202
Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F +T++ + + E G FVQDN S S G +RGLHFQ+ Y Q KLVR + G
Sbjct: 26 DDRGYFMETFNQRDMMEAGFSINFVQDNQSSS-TKGVLRGLHFQKH-YPQIKLVRAVRGS 83
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R NS TYG W +E++A N Q IP GFAHGF+ L E YKV DF+
Sbjct: 84 VFDVAVDLRSNSKTYGKWYGVELTAENKKQFLIPQGFAHGFLVLSDVAEFCYKVNDFWHP 143
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKD----QNLPFLNQIDSPFEYDGL 184
+ G+AW D I I WP + P ++ + LN ++ E+ GL
Sbjct: 144 NDEGGMAWNDPEIGIKWPHVKGDYPGSADASGYTMDDGTKLNLVERDQEWKGL 196
>gi|296116052|ref|ZP_06834672.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gluconacetobacter hansenii
ATCC 23769]
gi|295977406|gb|EFG84164.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gluconacetobacter hansenii
ATCC 23769]
Length = 182
Score = 137 bits (344), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 101/175 (57%), Gaps = 8/175 (4%)
Query: 1 MNINPVRILKTRKFE-----DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M P +I +K D RG F + + L E G+ F+Q + S + GT+RG
Sbjct: 1 MIFEPTKIFGVQKITLPRHCDERGSFGRIFDQGYLLENGISCDFIQTSISRTSYAGTLRG 60
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LHFQRPPYA+AKLV C+ G I+D+ D+R +SPTY + S +S ++ +YIP G AHG
Sbjct: 61 LHFQRPPYAEAKLVHCLRGEIYDVICDLRPDSPTYLLYESFYLSFSSNEMVYIPPGCAHG 120
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
FMTL + EV+Y ++ Y H SGV + D + I+WP T +SEKD N P
Sbjct: 121 FMTLNDDVEVLYAMSSIYMQSHASGVRYNDPRLGISWPRPVTY---ISEKDLNWP 172
>gi|309779481|ref|ZP_07674242.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia sp. 5_7_47FAA]
gi|308921722|gb|EFP67358.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia sp. 5_7_47FAA]
Length = 197
Score = 137 bits (344), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 103/177 (58%), Gaps = 8/177 (4%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F++ + + L G Q NHS+S GT+RGLHFQ PP+A+ KLV C+ GR
Sbjct: 24 DHRGYFTRFFCADELAAAGFDRPIAQINHSYSAKRGTVRGLHFQYPPHAEIKLVSCVRGR 83
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R SPT+ W ++E+SA + +P GFAHGF LE + E++Y + Y+
Sbjct: 84 VFDVAVDLRAGSPTFLQWHAVELSAERHNSLLVPRGFAHGFQALEDDCELLYLTSTPYAQ 143
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLPLLSLNME 192
+ G+ D + I WPL T S++D+N P L + G+ L +LN E
Sbjct: 144 AAEDGLNPTDSRLGIAWPLDMT---ECSDRDRNHPPLTDA-----FAGIALRALNPE 192
>gi|332663275|ref|YP_004446063.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Haliscomenobacter hydrossis
DSM 1100]
gi|332332089|gb|AEE49190.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Haliscomenobacter hydrossis
DSM 1100]
Length = 182
Score = 137 bits (344), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 96/156 (61%), Gaps = 4/156 (2%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F + +++ K G+ FVQDN + S G +RGLH+Q PYAQ KLVR + G
Sbjct: 21 DERGYFFEAFNAHTFKAAGIDVQFVQDNQARS-TFGVLRGLHYQLAPYAQGKLVRVLEGE 79
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+ D+ VDIR SP YG S+ +SA N Q+Y+P GFAHG++ L E YK ++Y+
Sbjct: 80 VLDVVVDIRPESPAYGQSYSIRLSAANKKQLYVPRGFAHGYLVLSPTAEFFYKCDNYYAK 139
Query: 136 EHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLP 170
H+ G+ + D ++I W + L ++ +SEKDQ LP
Sbjct: 140 AHEGGIHYNDPQLNIDWEIDLSQVI--LSEKDQVLP 173
>gi|254253075|ref|ZP_04946393.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia dolosa AUO158]
gi|124895684|gb|EAY69564.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia dolosa AUO158]
Length = 215
Score = 137 bits (344), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 104/162 (64%), Gaps = 5/162 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ + F D+RG+F ++++++ E V FVQDNHS S G +RGLH+Q +A
Sbjct: 45 VKIIEPKVFGDARGYFYESFNAREFAEHVAAGVEFVQDNHSLSAK-GVLRGLHYQ-VRHA 102
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVDIR+ SP +G WV + +S N Q++IP GFAHGF+ L +
Sbjct: 103 QGKLVRVVQGEVFDVAVDIRKRSPNFGQWVGVVLSEENHRQLWIPPGFAHGFVVLSDAAQ 162
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK TD++ E++ + W D I I WP+ + P ++ KD
Sbjct: 163 FLYKTTDYWYPEYERCIVWNDPEIGIEWPV--DVEPLLAAKD 202
>gi|319788036|ref|YP_004147511.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudoxanthomonas suwonensis
11-1]
gi|317466548|gb|ADV28280.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudoxanthomonas suwonensis
11-1]
Length = 185
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 105/181 (58%), Gaps = 9/181 (4%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ F D RG F +T++++ + GL FVQ N S S G +RGLH+Q P Q K
Sbjct: 13 VIEPAVFGDERGVFFETWNAERFGQQGLPTRFVQSNVSTS-TRGVLRGLHYQWP-RPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G ++D+AVDIRR SPT+G W ++ +SA N Q +IP GFAHGF L + Y
Sbjct: 71 LVSVLEGEVYDVAVDIRRGSPTFGRWEAVVLSAENRRQFWIPEGFAHGFAVLSGHAVFNY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLPLL 187
TD Y E+D+ V W D I + WP+ + +L S KD N PFL +I D LP+
Sbjct: 131 MCTDVYVKENDAAVRWNDGDIGVDWPIAEPVL---SAKDANAPFLAEIAE----DRLPVY 183
Query: 188 S 188
+
Sbjct: 184 T 184
>gi|325685364|gb|EGD27471.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
Length = 202
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 90/149 (60%), Gaps = 2/149 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F +TY+ +KE G FVQDN S S G +RGLHFQ+ + Q KLVR + G
Sbjct: 26 DDRGYFMETYNENDMKEAGFDINFVQDNQSSSTK-GVLRGLHFQKH-FPQCKLVRAVRGD 83
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R +S TYG W +E++A N Q IP GFAHGF+ L E YKV DF+
Sbjct: 84 VFDVAVDLRSDSKTYGKWYGVELTAENKKQFLIPEGFAHGFLVLSDVAEFCYKVNDFWHP 143
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSE 164
+ G+AW D I I WP L P ++
Sbjct: 144 NDEGGMAWNDPEIGIEWPQLVGEYPGSAD 172
>gi|153829546|ref|ZP_01982213.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae 623-39]
gi|29725982|gb|AAO88916.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]
gi|148874942|gb|EDL73077.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae 623-39]
Length = 181
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 97/154 (62%), Gaps = 4/154 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPTVFGDERGFFMETWNQKRFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 TE-NTQGKLVRVVSGEVFDVAVDIRKDSPTFGKWVGVYLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP 153
E +YK TD+Y+ + + W D I I WP
Sbjct: 125 SDEAEFVYKCTDYYNPTAEISLRWDDPDIGIEWP 158
>gi|254521791|ref|ZP_05133846.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stenotrophomonas sp. SKA14]
gi|219719382|gb|EED37907.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stenotrophomonas sp. SKA14]
Length = 185
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 100/168 (59%), Gaps = 5/168 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ F D+RG+F +T++++ LGL D FVQ N S S +RGLH+Q P Q K
Sbjct: 13 VIEPAVFGDARGYFFETWNAERFASLGLPDRFVQSNVSTSAQ-DVLRGLHYQWP-RPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G ++D+AVDIRR SPT+G W ++ +SA N Q +IP GFAHGF L Y
Sbjct: 71 LVSVLEGEVYDVAVDIRRGSPTFGQWEAVVLSAENKKQFWIPEGFAHGFAVLSERAVFSY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T+ Y + D+GV W D I + WP+ P++S KD+ PFL I
Sbjct: 131 LCTEVYLKDFDAGVRWNDADIAVDWPVS---APTLSAKDETAPFLKDI 175
>gi|313124556|ref|YP_004034815.1| dtdp-4-keto-6-deoxy-d-glucose 3,5-epimerase rmlc [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
gi|312281119|gb|ADQ61838.1| Putative dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC
[Lactobacillus delbrueckii subsp. bulgaricus ND02]
Length = 202
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 90/149 (60%), Gaps = 2/149 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F +TY+ +KE G FVQDN S S G +RGLHFQ+ + Q KLVR + G
Sbjct: 26 DDRGYFMETYNENDMKEAGFDINFVQDNQSSSTK-GVLRGLHFQKH-FPQCKLVRAVRGD 83
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R +S TYG W +E++A N Q IP GFAHGF+ L E YKV DF+
Sbjct: 84 VFDVAVDLRSDSKTYGKWYGVELTAENKKQFLIPEGFAHGFLVLSDVAEFCYKVNDFWHP 143
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSE 164
+ G+AW D I I WP L P ++
Sbjct: 144 NDEGGMAWNDPEIGIEWPKLVGEYPGSAD 172
>gi|300812685|ref|ZP_07093095.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|300496345|gb|EFK31457.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
Length = 202
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 90/149 (60%), Gaps = 2/149 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F +TY+ +KE G FVQDN S S G +RGLHFQ+ + Q KLVR + G
Sbjct: 26 DDRGYFMETYNENDMKEAGFDINFVQDNQSSSTK-GVLRGLHFQKH-FPQCKLVRAVRGD 83
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R +S TYG W +E++A N Q IP GFAHGF+ L E YKV DF+
Sbjct: 84 VFDVAVDLRSDSKTYGKWYGVELTAENKKQFLIPEGFAHGFLVLSDVAEFCYKVNDFWHP 143
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSE 164
+ G+AW D I I WP L P ++
Sbjct: 144 NDEGGMAWNDPEIGIEWPQLVGEYPGSAD 172
>gi|116514775|ref|YP_813681.1| dTDP-4-dehydrorhamnose 3,5-epimerase related enzyme [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|116094090|gb|ABJ59243.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
Length = 204
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 2/149 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F +TY+ +KE G FVQDN S S G +RGLHFQ+ + Q KLVR + G
Sbjct: 28 DDRGYFMETYNENDMKEAGFDINFVQDNQSSSTK-GVLRGLHFQKH-FPQCKLVRAVRGD 85
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R +S TYG W +E++A N Q IP GFAHGF+ L E YKV DF+
Sbjct: 86 VFDVAVDLRSDSKTYGKWYVVELTAENKKQFLIPEGFAHGFLVLSDVAEFCYKVNDFWHS 145
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSE 164
+ G+AW D +I I WP L P ++
Sbjct: 146 NDEGGMAWNDPAIGIEWPQLVGEYPGSAD 174
>gi|291550905|emb|CBL27167.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruminococcus torques L2-14]
Length = 202
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 94/168 (55%), Gaps = 18/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG+F +TY+ +KE G+ FVQDN S S G +RGLHFQ+ Y Q KLVR + G
Sbjct: 26 DARGYFMETYNENDMKEAGIDIKFVQDNQSMSTK-GVLRGLHFQKQ-YPQCKLVRTVRGS 83
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R S TYG W +E++ N Q IP GFAHGF+ L E YK DFY
Sbjct: 84 VFDVAVDLRLGSETYGKWYGVELTEENKKQFLIPKGFAHGFLVLSEIAEFCYKCDDFYHP 143
Query: 136 EHDSGVAWQDKSIDITWP----------------LLDTILPSVSEKDQ 167
+ G+AW D + I WP L D ++SEKDQ
Sbjct: 144 NDEGGMAWNDPEMGIEWPQVKGEYLGNALAEGYELEDGTKLNLSEKDQ 191
>gi|242240691|ref|YP_002988872.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dickeya dadantii Ech703]
gi|242132748|gb|ACS87050.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dickeya dadantii Ech703]
Length = 185
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 105/168 (62%), Gaps = 4/168 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQD--VFVQDNHSFSFDCGTIRGLHFQRPPY 63
++I++ F D RG+F +T+ K ++L Q FVQDNHS S G +RGLH+Q
Sbjct: 11 IKIIEPTVFGDERGFFMETWHQKRFEDLVTQRPCRFVQDNHSKSRK-GILRGLHYQTE-N 68
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
Q KLVR IAG +FD+AVDIR+NSPT+G V + +SA N Q++IP GFAHGF
Sbjct: 69 PQGKLVRVIAGEVFDVAVDIRKNSPTFGQSVGVYLSAQNKRQLWIPAGFAHGFYVTSDEA 128
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPF 171
E +YK TD+Y+ + + W D+S++I WP+ + ++ ++ +Q F
Sbjct: 129 EFVYKCTDYYNPNAEHCIIWNDESLNIDWPIENEMVILSAKDEQGKKF 176
>gi|220903819|ref|YP_002479131.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219868118|gb|ACL48453.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 179
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 98/167 (58%), Gaps = 9/167 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ--RPPY 63
V ++K R + D RG+F +T+ + G+ FVQDNHS S G +RGLHFQ RP
Sbjct: 11 VMLIKPRVWGDRRGYFVETWQHERYAAAGIDAAFVQDNHSMS-TYGILRGLHFQKTRP-- 67
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
Q KLV GR+FD+AVDIR SPT+G W +E++ +N Q+++P G AHGF
Sbjct: 68 -QGKLVSVSLGRVFDVAVDIRPGSPTFGQWYGVELTQDNQWQLWVPPGMAHGFAVTSQVA 126
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
YK TD+Y E + G+ W D + + WP+ +L S+KD++ P
Sbjct: 127 HFHYKCTDYYCPEDEGGIRWNDPDLAVAWPVAQPLL---SDKDRHTP 170
>gi|29726017|gb|AAO88944.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]
Length = 186
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 107/167 (64%), Gaps = 5/167 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQD---VFVQDNHSFSFDCGTIRGLHFQ 59
I V+I++ FED+RG+F +T+ +++ D FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVKIIEPIVFEDARGFFMETWQQNKFEKMVGSDKEITFVQDNHSSSIK-GVLRGLHYQ 66
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ Q KLVR G++FD+AVD+R++S T+G WV + +S +N +++P GFAHGF L
Sbjct: 67 KIN-TQGKLVRVTKGKVFDVAVDVRKDSVTFGEWVGVILSEDNRRMLWVPEGFAHGFYVL 125
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y+ E + ++W D+ I+I WP+ ++ S ++++
Sbjct: 126 SKEAEFLYKCTDYYNAESNVTISWNDEDINIDWPIEGQVVLSDTDRE 172
>gi|88705326|ref|ZP_01103037.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Congregibacter
litoralis KT71]
gi|88700416|gb|EAQ97524.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Congregibacter
litoralis KT71]
Length = 182
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 97/163 (59%), Gaps = 2/163 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +L + F D RG+F ++++++ KE G FVQDNHS S G +RGLH+Q + Q
Sbjct: 11 VYLLTPQVFGDERGFFVESWNAEAFKEAGFDLHFVQDNHSRSAQ-GILRGLHYQTA-HTQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR AG ++D+AVD+RR+SPT G W + + A +++P GFAHGF +
Sbjct: 69 GKLVRVTAGSVYDVAVDLRRDSPTLGQWYGVTLDAKTQQMLWVPPGFAHGFYVTSEYADF 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YK TD Y + +AW D + I WPL+D P++S KDQ
Sbjct: 129 QYKCTDKYDPGSEVSIAWDDPELAIDWPLVDGKEPALSAKDQT 171
>gi|75907336|ref|YP_321632.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anabaena variabilis ATCC
29413]
gi|75701061|gb|ABA20737.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anabaena variabilis ATCC
29413]
Length = 189
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 105/168 (62%), Gaps = 3/168 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I+ + D RG+F++T+ + GL+ V Q N S+++ GT+RG+H+Q P A+ K
Sbjct: 13 IIDLEEKPDHRGFFARTFCANEFAAHGLKPVVAQCNLSYNYKKGTLRGMHYQLRPAAETK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
L+RCI G I+D+ +D+R SPT+ + +E++A+N +Y+P FAHG+ L + EV+Y
Sbjct: 73 LIRCIKGAIYDVIIDMRPESPTFLSHIGVELTADNRRALYVPEMFAHGYQALTDDAEVVY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+V +FY+ ++ G+ + D +I WPL T+ +S+KD N P L I
Sbjct: 133 QVGEFYTPGYEKGLRYNDPFFNIEWPLDVTV---ISDKDANWPLLETI 177
>gi|302346399|ref|YP_003814697.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella melaninogenica
ATCC 25845]
gi|302150921|gb|ADK97182.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella melaninogenica
ATCC 25845]
Length = 184
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 108/167 (64%), Gaps = 3/167 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V I++ + F D RG+F +++ ++ K +G F+QDN S S G +RGLH+Q
Sbjct: 8 IDGVWIIEPKVFNDDRGYFFESFKQAEFDKNVGYHVDFIQDNESKS-SYGVLRGLHYQES 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQAKLVR I G++ D+AVD+R++SPT+G +V +E+S +N Q ++P GFAHGF+ L
Sbjct: 67 DTAQAKLVRVIKGKVVDVAVDLRKSSPTFGKYVMVELSEDNKRQFFVPRGFAHGFLVLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YKV + YS + ++ + W D+++ I WP +DT +S+KD N
Sbjct: 127 EAIFTYKVDNVYSPQTEASLRWNDETVGIKWP-IDTKDVILSDKDLN 172
>gi|325859589|ref|ZP_08172722.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella denticola CRIS
18C-A]
gi|327314390|ref|YP_004329827.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella denticola F0289]
gi|325482869|gb|EGC85869.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella denticola CRIS
18C-A]
gi|326945833|gb|AEA21718.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella denticola F0289]
Length = 184
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 108/168 (64%), Gaps = 3/168 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V +++ + F D+RG+F +++ + E +G F+QDN S S G +RGLH+Q+
Sbjct: 7 DIEGVWVIEPKVFNDARGYFFESFKQREFDEHIGHHVEFIQDNESKS-GYGVLRGLHYQQ 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
++QAKLVR I G++ D+AVDIR++SPT+G +V +E+S +N Q +IP GFAHGF+ L
Sbjct: 66 GEFSQAKLVRVIKGKVVDVAVDIRKSSPTFGKYVMVELSEDNKRQFFIPRGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YKV + Y + ++ + W D++I I WP +D +S+KD N
Sbjct: 126 DEAIFTYKVDNAYDPQSEASIRWDDETIGINWP-VDAKDVVLSDKDLN 172
>gi|271499809|ref|YP_003332834.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dickeya dadantii Ech586]
gi|270343364|gb|ACZ76129.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dickeya dadantii Ech586]
Length = 178
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 103/167 (61%), Gaps = 6/167 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I V+I++ + F D+RG+F +T+ K +E+ D+ FVQDNHS S G +RGLHFQ
Sbjct: 8 IQGVKIIQPKVFGDARGFFLETFEKKRYQEMLDIDLDFVQDNHSRSAR-GVLRGLHFQTV 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVDIR +SPTYG W + +S N Q +IP G AHGF+ L
Sbjct: 67 -NPQGKLVRVVRGEVFDVAVDIRPDSPTYGRWAGVNLSEENKTQFWIPPGLAHGFVVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+ YK TD+Y+ H+ + W D I I WP+ LP +S+KD+
Sbjct: 126 LADFEYKCTDYYNPVHEGCLLWNDPDIGIDWPI---TLPLLSDKDKK 169
>gi|255282133|ref|ZP_05346688.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bryantella formatexigens DSM
14469]
gi|255267452|gb|EET60657.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bryantella formatexigens DSM
14469]
Length = 186
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I ++++ F D RG+F +TY+ K G+ FVQDN S S G +RGLHFQ
Sbjct: 11 IEGLKVITPAVFGDERGYFMETYNYNDYKAAGIDMEFVQDNQSAS-KKGVLRGLHFQ-IN 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR ++G +FD+AVD+R S TYG W +SA N Q +IP FAHGF+ L
Sbjct: 69 FPQDKLVRVVSGEVFDVAVDLRPGSATYGKWHGEILSAENKKQFFIPKNFAHGFLVLSDY 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E YK TDFY + G+ W D I + WP+ + + ++SEKD+
Sbjct: 129 AEFAYKCTDFYHPNDEGGLMWNDPDIGVAWPIQEGMELTISEKDRK 174
>gi|240144742|ref|ZP_04743343.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseburia intestinalis L1-82]
gi|257203263|gb|EEV01548.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseburia intestinalis L1-82]
Length = 194
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 102/169 (60%), Gaps = 5/169 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I +++++ F D+RG+F +TY+ KE G+ FVQDN S S G +RGLHFQ
Sbjct: 12 GIEGLKVIEPAVFGDARGYFMETYNYNDFKEAGIDCQFVQDNQSAS-KKGVLRGLHFQ-I 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R S T+G W + +SA N Q ++P FAHGF+ L
Sbjct: 70 NHPQDKLVRVVNGEVFDVAVDLREGSETFGKWFGIVLSAENKKQFFVPKNFAHGFIVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS---VSEKDQ 167
E YKVTDFY + G+ W D +I + WP+ + + + +S+KD+
Sbjct: 130 YAEFCYKVTDFYHPNDEGGILWNDPAIGVEWPMPEGMTQADLILSDKDK 178
>gi|332297029|ref|YP_004438951.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Treponema brennaborense DSM
12168]
gi|332180132|gb|AEE15820.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Treponema brennaborense DSM
12168]
Length = 193
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 105/184 (57%), Gaps = 3/184 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I+ + ++ + F DSRG+F +TYS K GL FVQDN S S G +RGLHFQ+
Sbjct: 9 SISGLYEIQPKLFGDSRGYFLETYSEKDFFAAGLTMRFVQDNQSSS-SKGVLRGLHFQKR 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR ++G ++D+AVD+R SPT+G + + +SA Q YIP GFAHGF L
Sbjct: 68 -FPQGKLVRALSGEVYDVAVDLRVGSPTFGQYHGVVLSAEKQNQFYIPAGFAHGFFVLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW-PLLDTILPSVSEKDQNLPFLNQIDSPFE 180
YK TDFY E + G+ W D + I W L P +S KD P + + F+
Sbjct: 127 TAVFAYKCTDFYHPEDEGGIPWNDPAFGIDWRALAPGTEPILSAKDTAHPAFDPAAAYFD 186
Query: 181 YDGL 184
+G+
Sbjct: 187 ENGV 190
>gi|1944162|dbj|BAA19636.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Aggregatibacter
actinomycetemcomitans]
gi|71084099|gb|AAZ23559.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Aggregatibacter
actinomycetemcomitans]
Length = 179
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 102/165 (61%), Gaps = 4/165 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++L+ + F D RG+F +T+ + ++ +FVQ+NHS S G +RGLH+Q
Sbjct: 7 KIPDVKLLEPQVFGDERGFFMETFRDEWFRKNVADRIFVQENHSKSIK-GVLRGLHYQTE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR I+G +FD+AVD+R NS T+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 N-TQGKLVRVISGAVFDVAVDMRGNSLTFGQWVGEILSAENKHQLWVPEGFAHGFYVLTD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E YK TD+Y+ + + + W D++I I WPL PS+S KD
Sbjct: 125 EAEFTYKCTDYYNPKAEHSLIWNDETIGIEWPLYGE--PSLSAKD 167
>gi|194334530|ref|YP_002016390.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prosthecochloris aestuarii
DSM 271]
gi|194312348|gb|ACF46743.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prosthecochloris aestuarii
DSM 271]
Length = 181
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 102/173 (58%), Gaps = 2/173 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V + + R F D RG+F +++ ++ FVQDN S S G +RGLHFQ+
Sbjct: 8 IPDVLVFEPRIFGDERGYFFESFRQDFFEKHAGDVHFVQDNESRS-HYGVLRGLHFQKAQ 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+Q KLVR + G + D+AVDIR+ SP +G V++ ++A ++IP GFAHGF+ L
Sbjct: 67 YSQGKLVRVVEGAVLDVAVDIRKGSPWFGKHVAMHLNAEKKNMMWIPRGFAHGFVVLSET 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK ++Y+ E D+G+ W D ++ I W +D + VSEKD NL L +I
Sbjct: 127 AVFTYKCDNYYAPEADAGIRWNDPALGIEWG-VDASVIEVSEKDANLALLAEI 178
>gi|218131068|ref|ZP_03459872.1| hypothetical protein BACEGG_02672 [Bacteroides eggerthii DSM 20697]
gi|217986772|gb|EEC53105.1| hypothetical protein BACEGG_02672 [Bacteroides eggerthii DSM 20697]
Length = 182
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 105/164 (64%), Gaps = 2/164 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ + F D+RG+F + + + FVQDN S S G +RGLH+Q+
Sbjct: 8 IEGVWIIEPKVFNDARGYFMEAFKEGEFRANIGNVHFVQDNESKS-SFGVLRGLHYQKGE 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+QAKLVR I G++ D+AVD+R++SPT+G +VS+E+S N Q +IP GFAHGF+ L
Sbjct: 67 YSQAKLVRVIKGKVLDVAVDLRQSSPTFGKYVSVELSEENKRQFFIPRGFAHGFLVLSEE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YKV + Y+ E ++ + + D+++ I WP+ ++ L +SEKD
Sbjct: 127 AIFTYKVDNGYAPEAEASIRFNDETVGIDWPVAESQLL-LSEKD 169
>gi|63054926|gb|AAY29003.1| dTDP-dehydrorhamnose 3,5-epimerase [Stenotrophomonas maltophilia]
Length = 185
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 104/181 (57%), Gaps = 9/181 (4%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+L+ F D RG+F +T+++ ELGL FVQ N S S G +RGLH+Q P Q K
Sbjct: 13 VLEPAVFGDDRGFFFETWNAARFGELGLPTKFVQSNVSSSAK-GVLRGLHYQWP-RPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G ++D+AVDIR+ SPT+G W ++ +SA N Q +IP GFAHGF L Y
Sbjct: 71 LVSVLEGEVYDVAVDIRQGSPTFGRWEAVLLSAENKRQFWIPEGFAHGFAVLSERAIFSY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLPLL 187
T+ Y E D+ V W D + + WP+ PS+S KD+ PFL I + D LP+
Sbjct: 131 LCTEVYLREFDAAVRWNDADLAVDWPV---SAPSLSPKDEQAPFLKDIAA----DRLPVY 183
Query: 188 S 188
S
Sbjct: 184 S 184
>gi|297538358|ref|YP_003674127.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylotenera sp. 301]
gi|297257705|gb|ADI29550.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylotenera sp. 301]
Length = 180
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 105/167 (62%), Gaps = 7/167 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ-R 60
I V +++ F D RG+F ++++ +K +G FVQDNHS S + +RG+H+Q +
Sbjct: 8 IADVLVIEPNVFGDDRGFFFESFNHAKFEAAIGKPVKFVQDNHSKSAE-NVLRGMHYQIQ 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLVR + G +FD+AVDIR+NS T+G WV +SA N Q+++P GFAHGF+ L
Sbjct: 67 QP--QGKLVRVVQGIVFDVAVDIRKNSSTFGQWVGEILSAENKKQLWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E +YK TD+Y+ E + +AW D IDI WP+ L +S KDQ
Sbjct: 125 KTAEFLYKTTDYYAPEFERCIAWNDPEIDIKWPINGAAL--LSAKDQ 169
>gi|78186305|ref|YP_374348.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Chlorobium luteolum
DSM 273]
gi|78166207|gb|ABB23305.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium luteolum DSM 273]
Length = 194
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 104/174 (59%), Gaps = 3/174 (1%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKL 68
L+ D RG+F +++ +++E + FVQDN S S G +RGLHFQ+PPY Q+KL
Sbjct: 14 LEPEVLGDQRGYFLESFRQDVIEESVGRVSFVQDNESKS-RRGVLRGLHFQKPPYTQSKL 72
Query: 69 VRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128
VR ++GR+ D+A+DIR SP YG V+ E+ +++P GFAHGF+ L YK
Sbjct: 73 VRVVSGRVLDVALDIRIGSPWYGRHVACELDGERKNMLWVPKGFAHGFVVLSDEAVFAYK 132
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
++Y H+ G+ W D ++ I W LD L VS +D +LP L+ DS F Y+
Sbjct: 133 CDNYYMPSHEGGIHWNDPALGIDWK-LDPSLILVSARDSSLPGLSSADS-FRYE 184
>gi|29726036|gb|AAO88960.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]
Length = 177
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 103/174 (59%), Gaps = 5/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+I++ + F D RG+F +T+ K +E LG+ FVQDNHS S G +RGLHFQ+
Sbjct: 8 IPDVKIIEPKVFGDERGFFLETFHLKRYQEMLGINLDFVQDNHSRS-TKGVLRGLHFQKT 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVDIR+ SPT+G W + +S N Q ++P GFAHGF+ L
Sbjct: 67 K-PQGKLVRVVRGEVFDVAVDIRKGSPTFGKWEGVILSEENKRQFWVPPGFAHGFLVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK TD+Y + + W D +DI WP + I S+KD L+ +
Sbjct: 126 IADFEYKCTDYYDASDEGSLLWSDPELDIDWPNVSEI--KTSQKDSAAGLLSDL 177
>gi|317487717|ref|ZP_07946313.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eggerthella sp. 1_3_56FAA]
gi|325830483|ref|ZP_08163938.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eggerthella sp. HGA1]
gi|316913174|gb|EFV34687.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eggerthella sp. 1_3_56FAA]
gi|325487465|gb|EGC89905.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eggerthella sp. HGA1]
Length = 190
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 99/174 (56%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V ++ + D RG+F +TY G+ FVQDN S S G +RGLHFQ
Sbjct: 18 SIEGVLVVDVTAYGDERGYFVETYKRPDFVAGGIDCEFVQDNQSSSVK-GVLRGLHFQIE 76
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q+KLVR ++G +FD+AVD+R +SPTYG W +SA N Q ++P GFAHGF+ L
Sbjct: 77 -HPQSKLVRVVSGEVFDVAVDLRPDSPTYGKWEGAVLSAENRRQFFVPRGFAHGFLVLSD 135
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YK D Y + G+ W D I I WP+ + + +SEKD+ P L +
Sbjct: 136 IAEFCYKCDDVYHPNDEGGLMWNDPEIGIEWPISEGMELVLSEKDKAHPGLKDL 189
>gi|303252480|ref|ZP_07338644.1| hypothetical protein APP2_1456 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307248515|ref|ZP_07530533.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|302648681|gb|EFL78873.1| hypothetical protein APP2_1456 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306854991|gb|EFM87176.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
Length = 180
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI V++L+ + F D RG+F + + + ++ FVQ+NHS S G +RGLH+Q
Sbjct: 7 NIPDVKLLEPQVFGDERGFFMEIFRDEWFRQYVADRTFVQENHSKSIK-GVLRGLHYQTE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 N-TQGKLVRVVQGSVFDVAVDLRKSSPTFGQWVGEVLSAENKRQLWVPEGFAHGFYVLTE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E YK TD+Y+ + + + W D ++ I W L PS+S KD LN+
Sbjct: 125 TAEFTYKCTDYYNPKAEHSLIWNDPTVAINWNLGGA--PSLSAKDLAGKVLNE 175
>gi|291540647|emb|CBL13758.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseburia intestinalis XB6B4]
Length = 194
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 103/169 (60%), Gaps = 5/169 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I +++++ F D+RG+F +TY+ KE G+ FVQDN S S G +RGLHFQ
Sbjct: 12 GIEGLKVIEPAVFGDARGYFMETYNYNDFKEAGIDCQFVQDNQSAS-KKGVLRGLHFQ-I 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR ++G +FD+AVD+R S T+G W + ++A N Q ++P FAHGF+ L
Sbjct: 70 NHPQDKLVRVVSGEVFDVAVDLREGSETFGKWFGIVLTAENKKQFFVPKNFAHGFIVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS---VSEKDQ 167
E YKVTDFY + G+ W D +I + WP+ + + + +S+KD+
Sbjct: 130 YAEFCYKVTDFYHPNDEGGILWNDPAIGVEWPMPEGMTRADLILSDKDK 178
>gi|148545536|ref|YP_001265638.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida F1]
gi|148509594|gb|ABQ76454.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida F1]
Length = 181
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 109/173 (63%), Gaps = 10/173 (5%)
Query: 1 MNINP-----VRILKTRKFEDSRGWFSQTYSSK-LLKELGLQDVFVQDNHSFSFDCGTIR 54
MNI P V I++ + F DSRG+F + ++++ ++ G+ FVQDNHS S G +R
Sbjct: 1 MNIIPTAIPEVLIIEPKVFADSRGFFFEAFNAREFSQQTGVNMEFVQDNHSRSIK-GVLR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
GLH+Q Q KLVR + G I DIAVD+R++SPT+G WV++ +SA+N Q+++P GFAH
Sbjct: 60 GLHYQVA-NTQGKLVRVVHGEIRDIAVDVRKSSPTFGKWVAVHLSADNHRQLWVPPGFAH 118
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
GF + + E +YK TD+Y+ D + W D + I W L P +S+KD+
Sbjct: 119 GFAVMSESAEFLYKTTDYYNPGADRCIRWDDPQLAIDWGLQQP--PLLSDKDK 169
>gi|325920446|ref|ZP_08182374.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas gardneri ATCC
19865]
gi|325549093|gb|EGD20019.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas gardneri ATCC
19865]
Length = 185
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 100/168 (59%), Gaps = 5/168 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ F D RG+F +T++++ + GL FVQ N S S G +RGLH+Q P Q K
Sbjct: 13 VIEPAVFGDERGYFFETWNAERFGQHGLPTNFVQSNVSTSAR-GVLRGLHYQWP-RPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G ++D+AVDIR SP +G W ++ +SA N Q++IP GFAHGF L Y
Sbjct: 71 LVSVLEGEVYDVAVDIRSGSPHFGHWTAVLLSAENRRQVWIPEGFAHGFAVLSEKALFSY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
TD Y E D+GV W D I I WP+ D +L S KD + PFL+++
Sbjct: 131 LCTDVYVREADAGVRWNDAEIGIDWPISDPLL---SAKDASAPFLSEV 175
>gi|327184175|gb|AEA32622.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus amylovorus GRL
1118]
Length = 202
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 89/149 (59%), Gaps = 2/149 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F +T++ + + E G FVQDN S S G +RGLHFQ+ Y Q KLVR + G
Sbjct: 26 DDRGYFMETFNQRDMMEAGFSINFVQDNQSSS-TKGVLRGLHFQKH-YPQVKLVRAVRGS 83
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R S TYG W +E++A N Q IP GFAHGF+ L E YKV DF+
Sbjct: 84 VFDVAVDLRSESKTYGKWYGVELTAENKKQFLIPQGFAHGFLVLSDVAEFCYKVNDFWHP 143
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSE 164
+ G+AW D I I WP L P ++
Sbjct: 144 NDEGGMAWNDPEIGIEWPHLKGDYPGSAD 172
>gi|255068254|ref|ZP_05320109.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria sicca ATCC 29256]
gi|255047524|gb|EET42988.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria sicca ATCC 29256]
Length = 179
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 101/164 (61%), Gaps = 4/164 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPEVKLLEPQVFGDARGFFMETFRDEWFKANVCDRTFVQENHSKS-GKGVLRGLHYQTE- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G W +SA N Q+++P GFAHGF L
Sbjct: 66 NTQGKLVRVVVGEVFDVAVDMRKDSPTFGKWAGEILSAENKRQLWVPEGFAHGFYVLSDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y+ + + + W D ++ I WPL P++S KD
Sbjct: 126 AEFVYKCTDYYNPKAEHSLIWNDPTVGIEWPLQGE--PNLSPKD 167
>gi|157413775|ref|YP_001484641.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Prochlorococcus marinus str. MIT 9215]
gi|157388350|gb|ABV51055.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Prochlorococcus marinus str. MIT 9215]
Length = 161
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 100/149 (67%), Gaps = 4/149 (2%)
Query: 23 QTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAV 81
++++ K++ + +D+ F QDN SFS G +RGLHFQ+ P+AQ KLV CI G IFD+AV
Sbjct: 2 ESWNRKIILNILKKDIDFCQDNLSFS-KQGVLRGLHFQKDPFAQDKLVSCIQGSIFDVAV 60
Query: 82 DIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGV 141
D+R NS T+G WV + ++ + Q++IP GFA+GF+TL + V YK T++YS E + V
Sbjct: 61 DLRSNSKTFGKWVGVFLNDRDNEQLFIPKGFANGFLTLSESAYVKYKTTEYYSFESERYV 120
Query: 142 AWQDKSIDITWPL--LDTILPSVSEKDQN 168
W DK + I WPL ++ P VS+KD N
Sbjct: 121 IWNDKVLKIRWPLNKINFRNPIVSKKDSN 149
>gi|307246379|ref|ZP_07528455.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307255365|ref|ZP_07537175.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307259815|ref|ZP_07541533.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306852712|gb|EFM84941.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306861674|gb|EFM93658.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306866113|gb|EFM97983.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 180
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 101/165 (61%), Gaps = 4/165 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI V++L+ + F D RG+F +T+ + K+ FVQ+NHS S G +RGLH+Q
Sbjct: 7 NIPDVKLLEPQVFGDERGFFMETFRDEWFKQNVADRTFVQENHSKSIK-GVLRGLHYQ-T 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 65 ENTQGKLVRVVQGAVFDVAVDLRKSSPTFGQWVGEVLSAENKRQLWVPEGFAHGFYVLTD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E YK TD+Y+ + + + W D +I I W L PS+S KD
Sbjct: 125 TAEFTYKCTDYYNPKAEHSLIWNDPTIAIDWNLNGE--PSLSAKD 167
>gi|317403785|gb|EFV84265.1| DTDP-6-deoxy-L-mannose-dehydrogenase [Achromobacter xylosoxidans
C54]
Length = 183
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 98/160 (61%), Gaps = 3/160 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++TR +D+RG F++ + + L + VQ N S + G +RG+HFQRPP+A+ K
Sbjct: 13 VVETRPHQDTRGAFTRLFCADALSAVIGSRQIVQINQSRTLHAGAVRGMHFQRPPHAEMK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVRCI GR++D+ VD+R SPT+ W + E+ A + + IP G AHGF LE N+E++Y
Sbjct: 73 LVRCIRGRVWDVVVDLRAGSPTFLRWHAQELDAESARMLVIPEGCAHGFQVLEANSELLY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
T +Y+ ++GV D + I WPL T L S +DQ
Sbjct: 133 LHTAYYTPYAEAGVRHDDPRLGIRWPLAATDL---SSRDQ 169
>gi|12232611|gb|AAG49406.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Aggregatibacter
actinomycetemcomitans]
Length = 180
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 102/165 (61%), Gaps = 4/165 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++L+ + F D RG+F +T+ + ++ FVQ+NHS S G +RGLH+Q
Sbjct: 7 KIPDVKLLEPQVFGDERGFFMETFRDEWFRKNVADRTFVQENHSKSIK-GVLRGLHYQTE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR I+G +FD+AVD+R NS T+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 N-TQGKLVRVISGAVFDVAVDMRGNSLTFGQWVGEILSAENKHQLWVPEGFAHGFYVLTD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E YK TD+Y+ + + ++W D+++ I WPL PS+S KD
Sbjct: 125 EAEFTYKCTDYYNPKAEHSLSWNDETVGIEWPLYGK--PSLSAKD 167
>gi|194364283|ref|YP_002026893.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stenotrophomonas maltophilia
R551-3]
gi|194347087|gb|ACF50210.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stenotrophomonas maltophilia
R551-3]
Length = 185
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 100/168 (59%), Gaps = 5/168 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ F D+RG+F +T++++ LGL F Q N S S G +RGLH+Q P Q K
Sbjct: 13 VIEPAVFGDARGYFFETWNAERFAALGLPHRFAQSNVSTSAQ-GVLRGLHYQWP-RPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G ++D+AVDIRR SPT+G W ++ +SA N Q +IP GFAHGF L Y
Sbjct: 71 LVSVLEGEVYDVAVDIRRGSPTFGQWEAVVLSAENKKQFWIPDGFAHGFAVLSERAVFSY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T+ Y + D+GV W D I + WP+ P++S KD++ PFL I
Sbjct: 131 LCTEVYLKDFDAGVRWNDADIAVDWPI---SAPTLSAKDESAPFLKDI 175
>gi|257784799|ref|YP_003180016.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Atopobium parvulum DSM 20469]
gi|257473306|gb|ACV51425.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Atopobium parvulum DSM 20469]
Length = 201
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 103/180 (57%), Gaps = 8/180 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V+++ + + D+RG F +TY + G+ FVQDN S+S G +RGLHFQ
Sbjct: 22 SIEGVKVVDVKLYGDARGGFMETYREENFVAGGIGASFVQDNQSYSVQ-GVLRGLHFQIE 80
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ QAKLVR I+G +FD+AVD+R SPT+G W + +SA N Q ++P GFAHGF+ L
Sbjct: 81 -HPQAKLVRVISGTVFDVAVDLREGSPTWGQWEGVILSAENRRQFFVPRGFAHGFLVLSE 139
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL------LDTILPSVSEKDQNLPFLNQI 175
E YK D Y + G+ W D + + WP LD +S+KD+ P L+ +
Sbjct: 140 TAEFCYKCDDIYHPGDEGGIMWNDPELGVEWPAFLGEKNLDPAKVILSDKDKIHPALSTL 199
>gi|238916051|ref|YP_002929568.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium eligens ATCC
27750]
gi|238871411|gb|ACR71121.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium eligens ATCC
27750]
Length = 203
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 88/140 (62%), Gaps = 2/140 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG+F +TYS + ++E G+ FVQDN S S G +RGLHFQ+ + Q KLVR I G
Sbjct: 26 DNRGYFMETYSQRDMEEAGININFVQDNQSMSTK-GVLRGLHFQKH-FPQTKLVRAIKGA 83
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R +S TYG W + ++ N Q IP GFAHGF+ L E YK DFY
Sbjct: 84 VFDVAVDLRTDSETYGKWYGILLTEENKKQFLIPKGFAHGFLVLTDTAEFCYKCDDFYHP 143
Query: 136 EHDSGVAWQDKSIDITWPLL 155
+ G+AW D +I I WP L
Sbjct: 144 NDEGGLAWNDPAIGIEWPEL 163
>gi|293407678|gb|ADE44332.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia
pseudomallei]
gi|312100406|gb|ADQ27802.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei]
gi|312100442|gb|ADQ27836.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei]
gi|312100472|gb|ADQ27858.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei]
Length = 183
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 109/172 (63%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ + F D+RG+F ++++++ E V F+QDNHS S G +RGLH+Q +A
Sbjct: 13 VKIIEPKVFGDARGFFFESFNAREFAEQVEAGVEFIQDNHSRS-AKGVLRGLHYQIR-HA 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVDIRR+SP + WV + +SA+N Q+++P GFAHGF+ L + +
Sbjct: 71 QGKLVRVVEGEVFDVAVDIRRSSPNFDKWVGVVLSADNHRQLWVPPGFAHGFVVLSESAQ 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD++ E + + W D +I I WP+ P ++ KD LN +
Sbjct: 131 FLYKTTDYWYPEFERSIVWNDPTIGIEWPI--DFEPLLAAKDAAGAKLNDAE 180
>gi|298491812|ref|YP_003721989.1| dTDP-4-dehydrorhamnose 3,5-epimerase ['Nostoc azollae' 0708]
gi|298233730|gb|ADI64866.1| dTDP-4-dehydrorhamnose 3,5-epimerase ['Nostoc azollae' 0708]
Length = 181
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 102/168 (60%), Gaps = 3/168 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I+ + D RG+F++T+ ++ GL+ Q N SF+ GT+RG+H+Q P A+ K
Sbjct: 13 IIDLEEKPDQRGFFARTFCAQEFANHGLKPTVAQCNLSFNHIKGTLRGMHYQLLPAAETK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVRC G I+D+ VD+R PTY + LE+SA N +Y+P FAHG+ L EV+Y
Sbjct: 73 LVRCTQGAIYDVIVDMRPEFPTYLSHIGLELSAENRRALYVPEMFAHGYQALTDGAEVVY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+V +FY+ ++ G+ + D ++I+WPL T +S+KD+N P L I
Sbjct: 133 QVGEFYTPGYERGLRYDDPLLEISWPLAAT---EMSDKDRNWPLLESI 177
>gi|329667487|gb|AEB93435.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus johnsonii DPC
6026]
Length = 202
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 88/146 (60%), Gaps = 2/146 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F +T++ + + + G FVQDN S S G +RGLHFQ+ Y Q KLVR + G
Sbjct: 26 DDRGYFMETFNQRDMMDAGFSINFVQDNQSSS-TKGVLRGLHFQKK-YPQIKLVRAVRGS 83
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R +S TYG W +E++A N Q IP GFAHGF+ L E YKV DF+
Sbjct: 84 VFDVAVDLRSDSKTYGKWYGVELTAENKKQFLIPQGFAHGFLVLSDEAEFCYKVNDFWHQ 143
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPS 161
+ G+AW D I I WP L P
Sbjct: 144 NDEGGMAWNDPEIGIEWPHLKGDYPG 169
>gi|121607688|ref|YP_995495.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Verminephrobacter eiseniae
EF01-2]
gi|121552328|gb|ABM56477.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Verminephrobacter eiseniae
EF01-2]
Length = 182
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 111/178 (62%), Gaps = 6/178 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ + D+RG+F ++++ + ++ G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPEVVLIEPQVHGDARGFFYESFNQRAFEQATGCAGRFVQDNHSRSAQ-GVLRGLHYQ 64
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
R P Q KLVR + G + D+ VD+R++SP++G WV+ E+SA+N Q+++P GFAHGF+
Sbjct: 65 IRQP--QGKLVRVVRGAVLDVVVDLRKSSPSFGQWVAEELSADNHRQLWVPPGFAHGFLV 122
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
L + E +YK TD+Y+ H+ +AW D ++ I W L P +S +D P L +
Sbjct: 123 LSDSAECLYKTTDYYAPAHERCIAWDDPALAIDWRLRGN-RPLLSPRDAQAPPLAHAE 179
>gi|332306499|ref|YP_004434350.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332173828|gb|AEE23082.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 182
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 100/165 (60%), Gaps = 2/165 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+N V I + + F D RG+F +T+ + L E VQDNHS S G +RGLH+Q
Sbjct: 8 LNDVLIFEPKVFGDERGFFMETFRADLFTETTGVQTLVQDNHSKSRQ-GILRGLHYQLE- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR G ++D+ VD+R++S T+G LE+S N Q+++P GFAHGF
Sbjct: 66 HTQGKLVRVTQGSVYDVVVDLRQSSSTFGQSFGLELSVQNNKQLWVPAGFAHGFYVTSET 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E +YK +D+Y + + + W D ++I WPL++ +P++SEKD+
Sbjct: 126 AEFVYKCSDYYHPQSEVSILWNDPDLNIEWPLVNGDVPALSEKDK 170
>gi|19550671|gb|AAL91483.1|AF479753_4 putative dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC
[Lactobacillus gasseri]
Length = 202
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F +T++ + + E G FVQDN S S G +RGLHFQ+ Y Q KLVR + G
Sbjct: 26 DDRGYFMETFNQRDMMEAGFSINFVQDNQSSS-TKGVLRGLHFQKK-YPQIKLVRAVRGS 83
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R S TYG W +E++A N Q IP GFAHGF+ L E YKV DF+
Sbjct: 84 VFDVAVDLRSESKTYGKWYGVELTAENKKQFLIPQGFAHGFLVLSDVAEFCYKVNDFWHP 143
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPS 161
+ G+AW D I I WP L P
Sbjct: 144 NDEGGMAWNDPEIGIEWPHLKGDYPG 169
>gi|16265004|ref|NP_437796.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase protein
[Sinorhizobium meliloti 1021]
gi|15141143|emb|CAC49656.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase protein
[Sinorhizobium meliloti 1021]
Length = 187
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ ++ D RG+FS+ + L++ G Q NH+ + GTIRG+HFQRPP+ +AK
Sbjct: 24 VIERKQMGDERGFFSRFFCRDELRDFGADGTISQINHTLTRAKGTIRGMHFQRPPHDEAK 83
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
V C+AG +FD+AVDIR +SPTY W +S N + IP GFAHGF TL N E++Y
Sbjct: 84 FVSCLAGAVFDVAVDIRPDSPTYLQWHGEILSGENARSMMIPGGFAHGFQTLSENCELVY 143
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
Y+ + + G+ D + I+WPL + +SE+D+ F++
Sbjct: 144 LHDKPYAPDAEGGLNPLDPRLAISWPLE---VAQMSERDRAFAFIS 186
>gi|42518976|ref|NP_964906.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus johnsonii NCC
533]
gi|41583263|gb|AAS08872.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus johnsonii NCC
533]
gi|120400366|gb|ABM21421.1| sugar biosynthesis protein [Lactobacillus johnsonii]
Length = 202
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 88/146 (60%), Gaps = 2/146 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F +T++ + + + G FVQDN S S G +RGLHFQ+ Y Q KLVR + G
Sbjct: 26 DDRGYFMETFNQRDMMDAGFSINFVQDNQSSS-TKGVLRGLHFQKK-YPQIKLVRAVRGS 83
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R +S TYG W +E++A N Q IP GFAHGF+ L E YKV DF+
Sbjct: 84 VFDVAVDLRSDSKTYGKWYGVELTAENKKQFLIPQGFAHGFLVLSDEAEFCYKVNDFWHP 143
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPS 161
+ G+AW D I I WP L P
Sbjct: 144 NDEGGMAWNDPEIGIEWPHLKGDYPG 169
>gi|86160705|ref|YP_467490.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anaeromyxobacter dehalogenans
2CP-C]
gi|85777216|gb|ABC84053.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anaeromyxobacter dehalogenans
2CP-C]
Length = 188
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 98/162 (60%), Gaps = 4/162 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+++ R F D+RG+F ++++ + +G FVQDNHS S +RGLH+Q P Q
Sbjct: 13 VVEPRVFGDARGFFFESFNQRAFDAAVGRHVEFVQDNHSLS-TRNVLRGLHYQLP-NPQG 70
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR G +FD+AVD+RR SPT+G W +SA + Q++IP GFAHGF+ L E +
Sbjct: 71 KLVRVTRGEVFDVAVDLRRGSPTFGRWAGETLSAEDKRQLWIPEGFAHGFLVLSDEAEFV 130
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YK+TD++ EH+ + W D ++ I WP P VS KD
Sbjct: 131 YKITDYWHPEHEHCIRWDDPALGIDWP-TGGAPPIVSAKDAG 171
>gi|257791790|ref|YP_003182396.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eggerthella lenta DSM 2243]
gi|257475687|gb|ACV56007.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eggerthella lenta DSM 2243]
Length = 190
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 100/174 (57%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V ++ + D RG+F++TY G+ FVQDN S S G +RGLHFQ
Sbjct: 18 SIEGVLVVDVTAYGDERGYFAETYKRPDFVAGGIDAEFVQDNQSSSTK-GVLRGLHFQIH 76
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q+KLVR ++G +FD+AVD+R S TYG W + +SA N Q ++P GFAHGF+ L
Sbjct: 77 -HPQSKLVRVVSGEVFDVAVDLRPGSATYGAWEGVVLSAENRRQFFVPRGFAHGFLVLSD 135
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YK D Y + G+ W D I I WP+ + + +SEKD+ P L+ +
Sbjct: 136 IAEFCYKCDDVYHPNDEGGLMWNDPEIGIEWPIPEGMELVLSEKDKAHPGLSGL 189
>gi|294669023|ref|ZP_06734109.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291309015|gb|EFE50258.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 185
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 104/172 (60%), Gaps = 4/172 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K FVQ++HS S G +RGLH+Q
Sbjct: 13 IPEVKLLEPQVFGDARGFFMETFRDEWFKANVCDRTFVQESHSKS-GKGVLRGLHYQTE- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G W +SA N Q+++P GFAHGF L
Sbjct: 71 NTQGKLVRVVVGEVFDVAVDMRKSSPTFGKWAGEILSAENKRQLWVPEGFAHGFYVLSDE 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK TD+Y+ + + + W D S+ I WPL P++S KD LNQ
Sbjct: 131 AEFVYKCTDYYNPKAEHSLIWNDPSVGIEWPLQGE--PNLSPKDLAGRPLNQ 180
>gi|50882471|gb|AAT85650.1| RmlC [Escherichia coli]
Length = 154
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 92/141 (65%), Gaps = 2/141 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I + + F D RG+F ++++ K+ +E + V FVQDNHS S +RG+H+Q
Sbjct: 11 VLIFEPKVFGDERGFFFESFNQKVFEEAAGRKVEFVQDNHSKS-KINVLRGMHYQLTQNT 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR I+G ++D+AVD+R S T+G WV +E+S NN Q++IP GFAHGF LE NTE
Sbjct: 70 QGKLVRVISGSVYDVAVDLREKSKTFGKWVGVELSGNNKRQLWIPEGFAHGFYVLEENTE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQD 145
+YK TD Y+ H+ + W D
Sbjct: 130 FVYKCTDTYNPAHEHTLLWND 150
>gi|166713451|ref|ZP_02244658.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 185
Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 98/170 (57%), Gaps = 5/170 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ F D RG+F +T++++ + GL FVQ N S S G +RGLH+Q P Q K
Sbjct: 13 VIEPAVFGDERGYFFETWNAERFGQHGLPTQFVQSNVSTSAK-GVLRGLHYQWP-RPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G ++D+AVD+R SP +G W ++ +SA N Q +IP GFAHGF L Y
Sbjct: 71 LVSVLEGEVYDVAVDVRHGSPNFGQWAAVVLSAENNKQFWIPEGFAHGFAVLSERAVFSY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
TD Y E D+GV W D +I I WP+ D +L S KD PFL + +
Sbjct: 131 LCTDVYVKEADAGVRWDDAAIGIDWPISDPLL---SAKDAAAPFLADVPA 177
>gi|194337317|ref|YP_002019111.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pelodictyon
phaeoclathratiforme BU-1]
gi|194309794|gb|ACF44494.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pelodictyon
phaeoclathratiforme BU-1]
Length = 206
Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 103/182 (56%), Gaps = 3/182 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I + + F D RG+F +++ L ++ FVQDN S S G +RGLHFQ+PP
Sbjct: 19 IPDVLIFEPKVFGDDRGYFFESFRQDLFEQHVGHVAFVQDNESKS-GYGVLRGLHFQKPP 77
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q+KLVR + G + D+AVD+R SP YG VS + +++P GFAHGF+ L
Sbjct: 78 FTQSKLVRALYGSVLDVAVDLRLGSPWYGRHVSCLLDTERKRMLWVPKGFAHGFLVLSQE 137
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK ++Y+ HD+G+ W D S+ + W L ++ VS KD P + +D+ F Y+
Sbjct: 138 AVFAYKCDNYYTPSHDAGIRWNDPSLAVDWQLPPEVI-RVSGKDAEQPAFSSVDT-FAYE 195
Query: 183 GL 184
Sbjct: 196 AF 197
>gi|261365976|ref|ZP_05978859.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria mucosa ATCC 25996]
gi|288565437|gb|EFC86997.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria mucosa ATCC 25996]
Length = 179
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 100/161 (62%), Gaps = 4/161 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V++L+ + F D+RG+F +T+ + K FVQ+NHS S G +RGLH+Q Q
Sbjct: 11 VKLLEPQVFGDARGFFMETFRDEWFKANVCDRTFVQENHSKS-GKGVLRGLHYQTE-NTQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G +FD+AVD+R++SPT+G W +SA N Q+++P GFAHGF L E
Sbjct: 69 GKLVRVVVGEVFDVAVDMRKDSPTFGKWAGEILSAENKRQLWVPEGFAHGFYVLSDEAEF 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK TD+Y+ + + + W D ++ I WPL P++S KD
Sbjct: 129 VYKCTDYYNPKAEHSLIWNDPTVGIEWPLQGE--PNLSPKD 167
>gi|152994871|ref|YP_001339706.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Marinomonas sp. MWYL1]
gi|150835795|gb|ABR69771.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Marinomonas sp. MWYL1]
Length = 178
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 106/175 (60%), Gaps = 5/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
NI+ V I++ + F D RG+F +T+ ++ K+ D+ FVQDNHS S +RGLHFQ+
Sbjct: 7 NIDGVVIIEPKVFGDERGFFLETFQAERYKDFAGIDLPFVQDNHSRS-GKNVLRGLHFQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G +FD+ VDIR++S TYG WV +S N Q ++P GFAHGF+ L
Sbjct: 66 TK-PQGKLVRVVRGEVFDVVVDIRKDSLTYGLWVGALLSEENKRQFWVPPGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK TD+Y + + W D ++DI WP + I P +S KDQ+ L ++
Sbjct: 125 DVADFEYKCTDYYDQTDEGCLMWNDPTVDIEWP--EGIEPILSAKDQDGMALGEL 177
>gi|254973885|ref|ZP_05270357.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile
QCD-66c26]
gi|255091270|ref|ZP_05320748.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile CIP
107932]
gi|255312929|ref|ZP_05354512.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile
QCD-76w55]
gi|255515688|ref|ZP_05383364.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile
QCD-97b34]
gi|255648782|ref|ZP_05395684.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile
QCD-37x79]
gi|260682002|ref|YP_003213287.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile CD196]
gi|260685600|ref|YP_003216733.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile R20291]
gi|306518899|ref|ZP_07405246.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile
QCD-32g58]
gi|260208165|emb|CBA60479.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile CD196]
gi|260211616|emb|CBE01848.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile R20291]
Length = 185
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 96/167 (57%), Gaps = 2/167 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ F D RG+F ++Y+ K E GL F+QDN S S G +RG+HFQ
Sbjct: 10 KIEGLYIVEPNVFCDERGYFMESYNKKDFIEQGLDMCFIQDNESSSRK-GVLRGMHFQ-V 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR G +FD+AVD+R++S T+G W + +S N Q YIP GFAHGF+ L
Sbjct: 68 RYPQGKLVRVTEGEVFDVAVDLRKDSQTFGKWEGVILSDKNKKQFYIPEGFAHGFLVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YK T++Y E + G W DK I I WPL +SEKD+
Sbjct: 128 KAVFNYKCTNYYYPEFEHGFIWNDKQISIEWPLKGIEEIFLSEKDKK 174
>gi|323340991|ref|ZP_08081240.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Lactobacillus
ruminis ATCC 25644]
gi|323091653|gb|EFZ34276.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Lactobacillus
ruminis ATCC 25644]
Length = 202
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 86/140 (61%), Gaps = 2/140 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F +TY+ +KE G+ FVQDN S S G +RGLHFQ+ + Q KLVR + G
Sbjct: 26 DDRGYFMETYNENDMKEAGIDVKFVQDNQSMSTK-GVLRGLHFQKH-FPQCKLVRAVRGT 83
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD VD+R++S TYG W + +SA N Q IP GFAHGF+ L E YKV DF+
Sbjct: 84 VFDAVVDLRQDSKTYGKWYGVTLSAENKKQFLIPEGFAHGFLVLSDEAEFCYKVNDFWHP 143
Query: 136 EHDSGVAWQDKSIDITWPLL 155
+ G+AW D I I WP L
Sbjct: 144 NDEGGMAWNDPEIGIEWPEL 163
>gi|331004468|ref|ZP_08327939.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lachnospiraceae oral taxon
107 str. F0167]
gi|330411035|gb|EGG90456.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lachnospiraceae oral taxon
107 str. F0167]
Length = 186
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 95/153 (62%), Gaps = 3/153 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F+D RG+F +TY+ KE GL VFVQDN S S G +RGLHFQ+ + Q KLVR ++
Sbjct: 22 FKDDRGYFIETYNQNDFKEAGLDMVFVQDNESKS-SRGVLRGLHFQKE-HPQGKLVRVLS 79
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G ++D+AVD+R+NS T+G + +S+ N Q YIP GFAHGF+ L YK TDFY
Sbjct: 80 GEVYDVAVDLRKNSKTFGKHFGVLLSSENKKQFYIPEGFAHGFLVLSDEAVFAYKCTDFY 139
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ G+ + D I I WP+ L +SEKD
Sbjct: 140 HPNDEGGIIYNDPDIGINWPIEGMEL-IMSEKD 171
>gi|5545320|dbj|BAA82535.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase [Actinobacillus
actinomycetemcomitans]
Length = 179
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 100/165 (60%), Gaps = 4/165 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++L+ + F D RG+F +T+ + +E FVQ+NHS S G +RGLH+Q
Sbjct: 7 KIPDVKLLELQVFGDERGFFMETFRDEWFRENVADRTFVQENHSKSIK-GVLRGLHYQTE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR I+G +FD+AVD+R NS T+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 N-TQGKLVRVISGAVFDVAVDMRENSLTFGQWVGEVLSAENKHQLWVPEGFAHGFYVLTD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E YK TD+Y+ + + W D+++ + WP+ P++S KD
Sbjct: 125 EAEFTYKCTDYYNPRAEHSLIWNDQTVGVEWPIYSE--PNLSAKD 167
>gi|89901454|ref|YP_523925.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodoferax ferrireducens
T118]
gi|89346191|gb|ABD70394.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodoferax ferrireducens
T118]
Length = 183
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 102/162 (62%), Gaps = 5/162 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSK-LLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ R F D+RG+F ++++ + + GL FVQDNHS S G +RGLH+Q +
Sbjct: 13 VLILEPRVFGDARGFFFESFNQRDFAQATGLDVEFVQDNHSRSVK-GVLRGLHYQIQ-HP 70
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR G +FD+ VD+RR+SP +G W + +SA+N Q+++P GFAHGF+ E
Sbjct: 71 QGKLVRVTQGEVFDVVVDLRRDSPNFGKWDGVLLSADNKRQLWVPPGFAHGFVVTSDTAE 130
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK TD++ EH+ + W D ++ + WPL T P ++ KD
Sbjct: 131 FLYKTTDYWYPEHERSLLWNDPTVGVRWPL--TGEPQLAAKD 170
>gi|291534628|emb|CBL07740.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseburia intestinalis M50/1]
Length = 194
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 102/169 (60%), Gaps = 5/169 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I +++++ F D+RG+F +TY+ KE G+ FVQDN S S G +RGLHFQ
Sbjct: 12 GIEGLKVIEPAVFGDARGYFMETYNYNDFKEAGIDCQFVQDNQSAS-KKGVLRGLHFQ-I 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R S T+G W + ++A N Q ++P FAHGF+ L
Sbjct: 70 NHPQDKLVRVVNGEVFDVAVDLREGSETFGKWFGIVLTAENKKQFFVPKNFAHGFIVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS---VSEKDQ 167
E YKVTDFY + G+ W D +I + WP+ + + + +S+KD+
Sbjct: 130 YAEFCYKVTDFYHPNDEGGILWNDPAIGVEWPMPEGMTRADLILSDKDK 178
>gi|146343780|ref|YP_001208828.1| dTDP-4,deoxyrhamnose 3,5 epimerase [Bradyrhizobium sp. ORS278]
gi|146196586|emb|CAL80613.1| dTDP-4,deoxyrhamnose 3,5 epimerase [Bradyrhizobium sp. ORS278]
Length = 184
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 101/169 (59%), Gaps = 5/169 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V IL+ + F D RG+F +T+ + +ELG+ FVQDN S S G +RGLH Q P Q
Sbjct: 11 VIILEPKLFGDHRGFFLETFQAARYRELGINGPFVQDNMSRS-SYGVLRGLHLQNP-NTQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV + GR+ D+AVD+R SP +G V++E+S N Q+++P GFAHGF+ L + +
Sbjct: 69 GKLVSAMRGRVLDVAVDVRVGSPNFGKHVAVELSEENRRQLWVPRGFAHGFVVLSESADF 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
YK D+YS + + V W D +I I W + + P +S KD P L +
Sbjct: 129 FYKCDDYYSPKDEMSVRWNDPAIGIDWGVPE---PKLSPKDAEAPLLAE 174
>gi|227894122|ref|ZP_04011927.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus ultunensis DSM
16047]
gi|227864067|gb|EEJ71488.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus ultunensis DSM
16047]
Length = 202
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F +T++ + + + G FVQDN S S G +RGLHFQ+ Y Q KLVR + G
Sbjct: 26 DDRGYFMETFNQRDMMDAGFSINFVQDNQSSS-TKGVLRGLHFQKH-YPQVKLVRAVRGD 83
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R +S TYG W +E++A N Q IP GFAHGF+ L E YKV DF+
Sbjct: 84 VFDVAVDLRSDSKTYGKWYGVELTAENKKQFLIPQGFAHGFLVLSDVAEFCYKVNDFWHP 143
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKD----QNLPFLNQIDSPFEYDGL 184
+ G+AW D I I WP + P ++ + LN +D E+ GL
Sbjct: 144 NDEGGMAWNDPEIGIKWPHVKGDYPGSADASGYTLDDGTKLNLVDRDQEWKGL 196
>gi|70733809|ref|YP_257449.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas fluorescens Pf-5]
gi|68348108|gb|AAY95714.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas fluorescens Pf-5]
Length = 181
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 104/172 (60%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I++ + F D RG+F +++++K E G+ FVQDNHS S G +RGLH+Q
Sbjct: 11 VLIIEPKVFGDERGFFYESFNAKAFAEATGIDAQFVQDNHSRS-QKGVLRGLHYQLQ-NT 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR G + D+AVDIRR+SP +G WV++ + A N Q+++P GFAHGF+ L E
Sbjct: 69 QGKLVRVTQGEVLDVAVDIRRSSPHFGQWVAVRLYAQNHRQLWVPEGFAHGFVVLSDFAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK TD+Y+ + + W D ++ I W L + P +S KDQ L + D
Sbjct: 129 FLYKTTDYYTPSAERCIRWDDPTLAIDWELDEP--PQLSAKDQAGALLTEAD 178
>gi|28897003|ref|NP_796608.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio parahaemolyticus RIMD
2210633]
gi|153839162|ref|ZP_01991829.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio parahaemolyticus
AQ3810]
gi|260362303|ref|ZP_05775270.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio parahaemolyticus
K5030]
gi|260897618|ref|ZP_05906114.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio parahaemolyticus
Peru-466]
gi|260899548|ref|ZP_05907943.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio parahaemolyticus
AQ4037]
gi|28805211|dbj|BAC58492.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio parahaemolyticus RIMD
2210633]
gi|149747334|gb|EDM58312.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio parahaemolyticus
AQ3810]
gi|308087540|gb|EFO37235.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio parahaemolyticus
Peru-466]
gi|308108810|gb|EFO46350.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio parahaemolyticus
AQ4037]
gi|308111319|gb|EFO48859.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio parahaemolyticus
K5030]
Length = 187
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 107/167 (64%), Gaps = 4/167 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I + +++ + F DSRG+F ++++ K + G++ FVQDNHS S + GT+RGLH Q
Sbjct: 7 EIEGLLVVEPKVFGDSRGFFLESWNKLKFDEATGMEVSFVQDNHSKS-ESGTLRGLHIQT 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQ KLVR + G ++D+AVD+R++S TYG W L +SA N Q++IP GFAHGF+ LE
Sbjct: 66 KN-AQGKLVRVVKGAVYDVAVDLRKDSKTYGKWFGLILSAENKKQLWIPKGFAHGFLALE 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILP-SVSEKD 166
+TE +YK +Y ++ + W DK++ I W ++ +S+KD
Sbjct: 125 DDTEFLYKCDGYYDPLYEVSIDWNDKALAIDWGQFESFKTLKLSDKD 171
>gi|312960467|ref|ZP_07774976.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas fluorescens WH6]
gi|311285352|gb|EFQ63924.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas fluorescens WH6]
Length = 179
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 103/170 (60%), Gaps = 5/170 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I++ R + D+RG+F ++Y + +++G++ FVQDNHS S G +RGLHFQR Q
Sbjct: 11 VLIIEPRVYGDARGFFLESYQQQRYRDIGIEQPFVQDNHSRSAQ-GVLRGLHFQRS-RPQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR G ++D+ VDI S T G V++E++A + LQ+++P G+AHGF L +
Sbjct: 69 GKLVRVTRGAVYDVVVDIDPASATCGEHVAVELTAEDHLQLWVPPGYAHGFCVLSDTADF 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK TD Y + + G+ W D + I WPL P +SEKDQ P L +
Sbjct: 129 QYKCTDLYDPKDEGGLLWNDPDLGIAWPLGS---PLLSEKDQRHPRLRAL 175
>gi|317477045|ref|ZP_07936287.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides eggerthii
1_2_48FAA]
gi|316906838|gb|EFV28550.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides eggerthii
1_2_48FAA]
Length = 182
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 105/164 (64%), Gaps = 2/164 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ + F D+RG+F + + + FVQDN S S G +RGLH+Q+
Sbjct: 8 IEGVWIIEPKVFNDARGYFMEAFKEGEFRANIGNVHFVQDNESKS-SFGVLRGLHYQKGE 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+QAKLVR I G++ D+AVD+R++SPT+G +VS+E+S N Q +IP GFAHGF+ L
Sbjct: 67 YSQAKLVRVIKGKVLDVAVDLRQSSPTFGKYVSVELSEENKRQFFIPRGFAHGFLVLSEE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YKV + Y+ + ++ + + D+++ I WP+ ++ L +SEKD
Sbjct: 127 AIFTYKVDNGYAPQAEASIRFNDETVGIDWPVAESQLL-LSEKD 169
>gi|240948933|ref|ZP_04753289.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus minor NM305]
gi|240296748|gb|EER47359.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus minor NM305]
Length = 180
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 100/165 (60%), Gaps = 4/165 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++L+ + F D RG+F +T+ + K+ FVQ+NHS S G +RGLH+Q
Sbjct: 7 KIPDVKLLEPQVFGDERGFFMETFRDEWFKQNVADRTFVQENHSKSIK-GVLRGLHYQTE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 N-TQGKLVRVVQGAVFDVAVDLRKSSPTFGQWVGEILSAENKRQLWVPEGFAHGFYVLTE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E YK TD+Y+ + + + W D ++ I WPL P +S KD
Sbjct: 125 TAEFTYKCTDYYNPKAEHSLIWNDPTVGIEWPLDGE--PGLSVKD 167
>gi|220935510|ref|YP_002514409.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thioalkalivibrio sp.
HL-EbGR7]
gi|219996820|gb|ACL73422.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thioalkalivibrio sp.
HL-EbGR7]
Length = 189
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 98/170 (57%), Gaps = 5/170 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +++ R F D RG+F +TY + E G+ FVQDN S S G +RGLH Q P AQ
Sbjct: 11 VLLIEPRVFGDERGFFMETYQASRYAEAGIAGPFVQDNLSLS-RHGILRGLHLQHPG-AQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV + G +FD+AVD+R +SPT+G WV +S N Q+++P GFAHGF
Sbjct: 69 GKLVSVLKGEVFDVAVDVRTDSPTFGQWVGEYLSETNKRQLWVPEGFAHGFCVTSDEALF 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK T YS + + + W D +I I WP+ P++S+KDQ FL I
Sbjct: 129 AYKCTRLYSPQTEISIRWDDPAIGIQWPV---DAPALSQKDQAGLFLADI 175
>gi|333030494|ref|ZP_08458555.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides coprosuis DSM
18011]
gi|332741091|gb|EGJ71573.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides coprosuis DSM
18011]
Length = 184
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 105/170 (61%), Gaps = 6/170 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ + F+D RG+F ++Y+ K E + F+QDN S S G +RGLHFQR Y+QAK
Sbjct: 13 IIEPKVFKDQRGYFFESYNKKEFDEKVGRVEFIQDNESKSI-YGVVRGLHFQRGEYSQAK 71
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR + G++ D+ VD+R++SP++G ++E+SA N Q+++P GFAHGF L Y
Sbjct: 72 LVRVVQGKVLDVCVDLRKSSPSFGQIFTVELSAENHRQLFVPRGFAHGFSVLSEEVIFQY 131
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQI 175
K + Y+ E + +AW D + I W P D IL SEKD++ L +I
Sbjct: 132 KCDNLYAPESEGAIAWNDPKLGIDWGIPANDIIL---SEKDKHHKPLAEI 178
>gi|78049263|ref|YP_365438.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78037693|emb|CAJ25438.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 185
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 100/168 (59%), Gaps = 5/168 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ F D+RG+F +T++++ K+ GL FVQ N S S +RGLH+Q P Q K
Sbjct: 13 VIEPSVFGDARGYFFETWNAERFKQHGLPQNFVQSNVSTSAKS-VLRGLHYQWP-RPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV +AG ++D+AVD+R SP +G W ++ +SA N Q++IP GFAHGF L Y
Sbjct: 71 LVSVLAGEVYDVAVDLRSGSPHFGRWTAVLLSAENRRQVWIPEGFAHGFAVLSETALFSY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
TD Y E D+GV W D +I I WP+ + +L S KD PFL +
Sbjct: 131 LCTDIYVNEADAGVRWDDAAIGIDWPISNPVL---STKDAAAPFLADV 175
>gi|219670180|ref|YP_002460615.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfitobacterium hafniense
DCB-2]
gi|219540440|gb|ACL22179.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfitobacterium hafniense
DCB-2]
Length = 178
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I ++K F D RG FS+ + + L+ GL Q N S + + GT+RGLH Q
Sbjct: 7 KIAGAYLVKREPFADERGTFSRLFCRRELEAAGLCGEISQMNLSTNRNKGTLRGLHSQSG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
A+ KLV C+ G +FD+ VD+R +SPTY WV +SA NG+ +Y+P G AHG++T+
Sbjct: 67 NAAEDKLVTCVQGEVFDVCVDVREDSPTYLQWVGETLSAENGMGLYVPKGCAHGYLTMTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
N +V+Y VT++Y+ + + G + D + +I WP++ + +SEKD+N +++
Sbjct: 127 NAQVLYLVTEYYTPDTEVGYRFDDSAFEIAWPIMPPYI--MSEKDKNWRYIS 176
>gi|20502683|gb|AAM22546.1|AF343089_3 putative dTDP-4-dehydrorhamnose 3,5-epimerase [Aeromonas
hydrophila]
Length = 183
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 97/168 (57%), Gaps = 5/168 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ + F D RG+F +TY K G+ FVQDN S S +RGLHFQ+ Q K
Sbjct: 13 IIEPKVFGDERGFFYETYQEARYKAAGITPDFVQDNRSRSTQ-NVLRGLHFQKT-KPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV GR+FD+AVD+R +SPT+G S+ ++ N +Q YIP GFAHGF L + Y
Sbjct: 71 LVTVTQGRVFDVAVDLRPDSPTFGQHESVLLTGENKIQFYIPPGFAHGFCVLSETADFQY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
K TD+Y +SG+ W D ++ I WPL P +S KD P L QI
Sbjct: 131 KCTDYYDPTDESGLLWNDPALGIEWPL---TAPLLSPKDSVQPTLAQI 175
>gi|109898447|ref|YP_661702.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudoalteromonas atlantica
T6c]
gi|109700728|gb|ABG40648.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudoalteromonas atlantica
T6c]
Length = 182
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 100/165 (60%), Gaps = 2/165 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+N V I + + F D RG+F +T+ + L E VQDNHS S G +RGLH+Q
Sbjct: 8 LNDVLIFEPKVFGDERGFFMETFRADLFTEATGVKALVQDNHSKSRQ-GILRGLHYQLE- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR G ++D+ VD+R++S ++G +E+SA N Q+++P GFAHGF
Sbjct: 66 HTQGKLVRVTQGSVYDVVVDLRQSSSSFGQSYGIELSAQNNKQLWVPAGFAHGFYVTSET 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E +YK +D+Y + + + W D ++ I WPL++ P++SEKD+
Sbjct: 126 AEFVYKCSDYYHPQSEVSILWNDPALSIQWPLVNGETPALSEKDK 170
>gi|312882944|ref|ZP_07742676.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309369463|gb|EFP96983.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 184
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 103/171 (60%), Gaps = 9/171 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ-- 59
N++ +++ + D RG+F +++ + +E+G+++ FVQDN S S G +RGLH Q
Sbjct: 7 NLDGCIVIEPDVYGDERGYFFESFHEEKYREIGIKETFVQDNFSKS-SKGILRGLHSQLN 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+P Q KLV G +FD+AVD+R SPT+G S+ +S N Q+YIP GFAHGF+TL
Sbjct: 66 KP---QGKLVSVTKGEVFDVAVDLRETSPTFGKHFSIVLSDKNHKQLYIPPGFAHGFLTL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
YK TDFY E + G+ W D +DI WP T P +S+KD+ P
Sbjct: 123 SDVVHFGYKCTDFYDPEDELGILWNDADLDIDWP---TDTPQLSKKDKEQP 170
>gi|293604975|ref|ZP_06687372.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Achromobacter piechaudii ATCC
43553]
gi|292816803|gb|EFF75887.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Achromobacter piechaudii ATCC
43553]
Length = 185
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 103/168 (61%), Gaps = 3/168 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
++I++ D RG+ ++ + L+ G Q NH+++ GTIRG+H+Q PP+A+
Sbjct: 13 LKIVERHPRGDDRGFLARLFDGADLRACGWDAAIEQVNHTYTAQAGTIRGMHYQLPPHAE 72
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV CI G ++D+AVDIR+ SPT+ W + +SA+NG + IP GFAHGF TL + E+
Sbjct: 73 IKLVSCIRGAVWDVAVDIRQGSPTFLQWHAERLSADNGRALLIPRGFAHGFQTLTDDVEM 132
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+Y + Y+ + ++ + +QD + I WPL L VS +DQ P L+
Sbjct: 133 LYCHSAPYAPQAEAALHFQDARLGIAWPL---PLTQVSPRDQQHPRLD 177
>gi|160425306|gb|ABX39498.1| RmlC [Aeromonas hydrophila]
Length = 183
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 99/174 (56%), Gaps = 5/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ + I++ + F D RG+F +TY K G+ FVQDN S F +RGLHFQ+
Sbjct: 7 KISDLLIIEPKVFGDERGFFYETYQDARYKAAGITLDFVQDNRS-RFTQNVLRGLHFQKT 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLV GR+FD+AVD+R +SPT+G S+ ++ N +Q YIP GFAHGF L
Sbjct: 66 K-PQGKLVTVTQGRVFDVAVDLRPDSPTFGQHESVLLTGENKVQFYIPPGFAHGFCVLSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK TD+Y +SG+ W D + I WPL P +S KD P L QI
Sbjct: 125 TADFQYKCTDYYDPADESGLLWNDPELGIEWPL---AAPVLSPKDSVQPTLAQI 175
>gi|189465696|ref|ZP_03014481.1| hypothetical protein BACINT_02057 [Bacteroides intestinalis DSM
17393]
gi|189433960|gb|EDV02945.1| hypothetical protein BACINT_02057 [Bacteroides intestinalis DSM
17393]
Length = 182
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 107/173 (61%), Gaps = 4/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
I+ V +++ + F D RG+F + + + K + DV FVQDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPKVFRDERGYFMEAFKEEDFK-AHIGDVHFVQDNESKS-SFGVLRGLHYQK 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Y Q+KLVR I G++ D+AVD+RR SPT+G +VS+E+S N Q +IP GFAHGF+ L
Sbjct: 65 GEYCQSKLVRVIKGKVLDVAVDLRRTSPTFGKYVSVELSEENQRQFFIPRGFAHGFLVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
YKV + Y+ + ++ + + D++I I WP+ + L +S KD+ P
Sbjct: 125 DEAIFTYKVDNVYAPQAEASIRFNDETIGIDWPVAEEHL-LLSPKDKAAPLFK 176
>gi|21672269|gb|AAM74476.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aeromonas hydrophila]
Length = 183
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 97/168 (57%), Gaps = 5/168 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ + F D RG+F +TY K G+ FVQDN S S +RGLHFQ+ Q K
Sbjct: 13 IIEPKVFGDERGFFYETYQEARYKAAGITPDFVQDNRSRSTQ-NVLRGLHFQKT-KPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV GR+FD+AVD+R +SPT+G S+ ++ N +Q YIP GFAHGF L + Y
Sbjct: 71 LVTVAQGRVFDVAVDLRPDSPTFGQHESVLLTGENKIQFYIPPGFAHGFCVLSETADFQY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
K TD+Y +SG+ W D ++ I WPL P +S KD P L QI
Sbjct: 131 KCTDYYDPTDESGLLWNDPALGIEWPL---TAPLLSPKDSVQPTLAQI 175
>gi|330887883|gb|EGH20544.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv. mori
str. 301020]
Length = 286
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 107/174 (61%), Gaps = 7/174 (4%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + F D RG+F ++++ ++ + V FVQDNHS S G +RG+H+Q
Sbjct: 96 LAIPDVILFTPKVFGDERGFFYESFNQQVFDSAVNRKVNFVQDNHSKSAG-GVVRGMHYQ 154
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
+ P Q KLVR I G +FD+AVD+RR+SP +G WV +S N Q+++P GFAHGF+
Sbjct: 155 IQNP--QGKLVRVIKGEVFDVAVDLRRDSPFFGKWVGEYLSEENKKQLWVPEGFAHGFIV 212
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN-LPF 171
L + E +YK T++Y + + W D I I WP L T P++S KDQN LPF
Sbjct: 213 LSDSAEFLYKTTNYYDPRSERSLRWDDADIGIKWPALST-QPTLSVKDQNALPF 265
>gi|325915780|ref|ZP_08178082.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas vesicatoria ATCC
35937]
gi|325538044|gb|EGD09738.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas vesicatoria ATCC
35937]
Length = 185
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 98/168 (58%), Gaps = 5/168 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ F D+RG F +T++++ + GL FVQ N S S G +RGLH+Q P Q K
Sbjct: 13 VIEPAVFGDARGQFFETWNAERFGQHGLPTSFVQSNVSTSAK-GVLRGLHYQWP-RPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G ++D+AVDIR SP +G W ++ +SA N Q++IP GFAHGF L Y
Sbjct: 71 LVSVLEGEVYDVAVDIRAGSPHFGRWTAVLLSAENRRQVWIPEGFAHGFAVLSERALFSY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
TD Y E D+GV W D +I I WP+ D +L S KD PFL +
Sbjct: 131 LCTDVYVKEADAGVRWDDAAIGIDWPISDPVL---SAKDAAAPFLADV 175
>gi|113867830|ref|YP_726319.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia eutropha H16]
gi|113526606|emb|CAJ92951.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia eutropha H16]
Length = 183
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 105/166 (63%), Gaps = 5/166 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I++ + F D RG+F ++++ +L +E G++ FVQDNHS S +RGLH+Q
Sbjct: 9 DIPEVLIIEPKVFGDDRGFFYESFNGRLFEEATGVKRTFVQDNHSRS-TRNVLRGLHYQ- 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+ Q KLVR + G++FD AVD+R +SP +G WV + +SA N ++++P GFAHGF+ +
Sbjct: 67 IKHPQGKLVRVVVGQVFDAAVDLRMSSPNFGKWVGVMLSAENKRELWVPEGFAHGFVVIS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD++ EH+ + W D + I WP+ P ++ KD
Sbjct: 127 EYAEFLYKTTDYWYPEHERSLLWNDTRVGIDWPIHGE--PVLAAKD 170
>gi|226944850|ref|YP_002799923.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Azotobacter vinelandii DJ]
gi|226719777|gb|ACO78948.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Azotobacter vinelandii DJ]
Length = 186
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 96/149 (64%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
+++++ R+F DSRG+ ++ + ++ L G Q NH+F+ GT+RG+HFQRPP+A+
Sbjct: 14 LKLVERRRFGDSRGFLARLFCAEELAATGWLQPIAQINHTFTTWRGTVRGMHFQRPPHAE 73
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKLV C+ G ++D+AVD+R SPT+ W + +SA+N + IP GFAHGF TL +
Sbjct: 74 AKLVTCLQGEVWDVAVDLRAGSPTFLHWHAERLSADNARALLIPEGFAHGFQTLTNGAAL 133
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
+Y + Y+ + G+ QD+ + I WPL
Sbjct: 134 LYCHSAAYAPGAEGGLHPQDERLGIAWPL 162
>gi|145219284|ref|YP_001129993.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prosthecochloris vibrioformis
DSM 265]
gi|145205448|gb|ABP36491.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium phaeovibrioides
DSM 265]
Length = 194
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 106/182 (58%), Gaps = 9/182 (4%)
Query: 1 MNINPVRILKTRKFE-----DSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIR 54
M + I +FE D RG+F +++ L++E +G D FVQDN S S G +R
Sbjct: 1 MRVTSTAIPDVLEFEPDVLGDERGYFFESFRRDLIEEHIGRVD-FVQDNESKS-SRGVLR 58
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
GLHFQRPP+ Q+KLVR + GR+ D+AVDIRR SP YG +V+ E+ ++++P GFAH
Sbjct: 59 GLHFQRPPHTQSKLVRVVRGRVLDVAVDIRRGSPWYGRYVACELDGERKNELWVPKGFAH 118
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
GF+ L YK +Y + G+ W D ++ I W L +T + VS KD LP +
Sbjct: 119 GFVVLSDEAVFSYKCDSYYQPSSEGGLLWNDPALGIDWRLEETDI-RVSGKDGGLPGFSG 177
Query: 175 ID 176
I+
Sbjct: 178 IE 179
>gi|266620081|ref|ZP_06113016.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium hathewayi DSM
13479]
gi|288868310|gb|EFD00609.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium hathewayi DSM
13479]
Length = 221
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 99/173 (57%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI + +++ + F D RG+ + Y + +E GL VFVQDN S S GT+RG+HFQ+
Sbjct: 11 NIEGLYLVEPQVFADERGYNFEAYHAGSFREAGLDMVFVQDNLSMSAK-GTLRGMHFQKN 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLV + G +FD VDIR S TYG W +SA +Y+P GFAHGF+ L
Sbjct: 70 -YQQGKLVCVVCGEVFDAVVDIREGSRTYGQWFGTVLSAEKKNMLYVPEGFAHGFLVLSD 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
YK+++ Y E +SG+ W D+++ I WP+ + + SE+D P +
Sbjct: 129 TAVFSYKLSEHYHPEDESGIPWNDETVGIRWPIPEDMTVLTSERDSCHPAFGE 181
>gi|255654312|ref|ZP_05399721.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile
QCD-23m63]
gi|296452602|ref|ZP_06894296.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile NAP08]
gi|296880986|ref|ZP_06904932.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile NAP07]
gi|296258563|gb|EFH05464.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile NAP08]
gi|296428007|gb|EFH13908.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile NAP07]
Length = 185
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 97/167 (58%), Gaps = 2/167 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ F D RG+F ++Y+ + E GL F+QDN S S G +RG+HFQ
Sbjct: 10 KIEGLYIVEPSVFCDERGYFMESYNKRDFIEQGLDMCFIQDNESSSRK-GVLRGMHFQ-V 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR G +FD+AVD+R++S T+G W + +S N Q YIP GFAHGF+ L
Sbjct: 68 RYPQGKLVRVTEGEVFDVAVDLRKDSKTFGEWEGVILSDKNKKQFYIPEGFAHGFLVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YK T++Y E ++G W DK I I WPL +SEKD+
Sbjct: 128 KAVFNYKCTNYYYPEFENGFIWNDKQISIEWPLKGIEEIFLSEKDKK 174
>gi|289451236|gb|ADC94150.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira interrogans
serovar Hebdomadis]
Length = 186
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 110/176 (62%), Gaps = 4/176 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ + F D RG+F +T+ + + ++ + F QDNHS S G +RG+H Q PPY Q K
Sbjct: 13 LIEPKVFGDERGFFLETFKASIFEKENIPFQFSQDNHSRS-SRGVLRGMHLQIPPYDQGK 71
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR + G++ D+ VD+R SP YG W+S+E+S N ++P GFAHGF+TLE T+ +Y
Sbjct: 72 LVRVVRGKVIDVVVDVRVGSPNYGKWLSVELSEENKNIFWVPPGFAHGFLTLEDKTDFLY 131
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWP--LLDTILPSVSEKDQNLPFLNQIDSPFEY 181
KVT YS +++ G+ W D ++ I W L D+ VS++DQ PF SPF Y
Sbjct: 132 KVTGEYSPQNEVGIRWDDPALGIPWKTWLSDSEF-IVSQRDQVTPFFADFKSPFVY 186
>gi|17230322|ref|NP_486870.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nostoc sp. PCC 7120]
gi|17131924|dbj|BAB74529.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nostoc sp. PCC 7120]
Length = 189
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 105/168 (62%), Gaps = 3/168 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I+ + D RG+F++T+ + GL+ V Q N S+++ GT+RG+H+Q P A+ K
Sbjct: 13 IIDLEEKPDHRGFFARTFCANEFANHGLKPVVAQCNLSYNYKKGTLRGMHYQLRPAAETK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
L+RCI G I+D+ +D+R SPT+ + +E++A+N +Y+P FAHG+ L + EV+Y
Sbjct: 73 LIRCIKGAIYDVIIDMRPESPTFLSHIGVELTADNRRALYVPEMFAHGYQALTDDAEVVY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+V +FY+ ++ G+ + D +I WPL T+ +S+KD + P L I
Sbjct: 133 QVGEFYTPGYEKGLRYNDPFFNIEWPLDVTV---ISDKDASWPLLETI 177
>gi|24214359|ref|NP_711840.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira interrogans
serovar Lai str. 56601]
gi|45657974|ref|YP_002060.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
gi|5814318|gb|AAD52186.1|AF144879_25 unknown [Leptospira interrogans]
gi|17940024|gb|AAL49431.1|AF316500_18 RmlC [Leptospira interrogans]
gi|24195292|gb|AAN48858.1|AE011344_2 dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira interrogans
serovar Lai str. 56601]
gi|1666505|gb|AAB47840.1| RmlC [Leptospira interrogans]
gi|45601215|gb|AAS70697.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
gi|289450993|gb|ADC93910.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira interrogans
serovar Canicola]
gi|289451077|gb|ADC93993.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira interrogans
serovar Autumnalis]
gi|289451156|gb|ADC94071.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira interrogans
serovar Grippotyphosa]
Length = 186
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 110/176 (62%), Gaps = 4/176 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ + F D RG+F +T+ + + ++ + F QDNHS S G +RG+H Q PPY Q K
Sbjct: 13 LIEPKVFGDERGFFLETFKASIFEKENIPFQFSQDNHSRS-SRGVLRGMHLQIPPYDQGK 71
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR + G++ D+ VD+R SP YG W+S+E+S N ++P GFAHGF+TLE T+ +Y
Sbjct: 72 LVRVVRGKVIDVVVDVRVGSPNYGKWLSVELSEENKNIFWVPPGFAHGFLTLEDKTDFLY 131
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWP--LLDTILPSVSEKDQNLPFLNQIDSPFEY 181
KVT YS +++ G+ W D ++ I W L D+ VS++DQ PF SPF Y
Sbjct: 132 KVTGEYSPQNEVGIRWDDPALGIPWKTWLSDSEF-IVSQRDQVTPFFADFKSPFVY 186
>gi|227538986|ref|ZP_03969035.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingobacterium spiritivorum
ATCC 33300]
gi|227241189|gb|EEI91204.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingobacterium spiritivorum
ATCC 33300]
Length = 182
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 105/171 (61%), Gaps = 7/171 (4%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
IL+ K+ DSRG+F ++++ K +L G FVQDN S+S G +RGLH Q +AQA
Sbjct: 13 ILEPAKYGDSRGYFMESFNEKTFNDLTGTNTHFVQDNQSYS-TRGVLRGLHAQAGDHAQA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR + G + DIAVD+R S T+G +V++ +SA N LQ+++P GF HGF+ L
Sbjct: 72 KLVRVLEGEVIDIAVDVRAGSSTFGQYVAVRLSAENNLQLFVPRGFLHGFVVLSETATFF 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQI 175
YK +FY+ E + GV DK + + W P+ + +L S+KD+ P +I
Sbjct: 132 YKCDNFYNKESECGVHPLDKDLAVDWQIPIEEMVL---SDKDKAAPGFKEI 179
>gi|118581747|ref|YP_902997.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pelobacter propionicus DSM
2379]
gi|118504457|gb|ABL00940.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pelobacter propionicus DSM
2379]
Length = 187
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 97/169 (57%), Gaps = 6/169 (3%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F+D RG F +TY+ K + G + ++ +S S G +RGLHFQ PP+ KLV C A
Sbjct: 19 FQDERGRFVKTYNEKTFESHGCCTDWKEEFYSVSRR-GVLRGLHFQLPPHQHDKLVYCTA 77
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G + D VD+R+ SPTYG + LE+SA G +YIP G AHGF + ++YKV+ Y
Sbjct: 78 GTVLDAVVDLRKGSPTYGDHIMLELSAEKGNMLYIPRGLAHGFYVTSESATMMYKVSSVY 137
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
+ +HD+G+ W S I WP P +S KD LP L SPF +D
Sbjct: 138 APDHDAGIRWD--SAGIAWP---ASTPIISTKDGLLPPLIDFSSPFSFD 181
>gi|307302365|ref|ZP_07582123.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica BA175]
gi|306914403|gb|EFN44824.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica BA175]
Length = 184
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 101/174 (58%), Gaps = 5/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ + F D RG+F +T+ + K G+ D FVQDN S S G +RGLHFQ+
Sbjct: 7 KIKDLLIIEPKVFGDDRGFFYETFQKERYKAAGIIDDFVQDNRSRSTK-GVLRGLHFQKT 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLV G +FD+AVD+R NS T+G + ++ ++ N LQ Y+P GF HGF L
Sbjct: 66 K-PQGKLVTVTEGEVFDVAVDLRPNSETFGQYEAIILTGANKLQFYVPPGFGHGFCVLSD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK TD+Y +SG+ W D ++I WP+ P +SEKD LP L I
Sbjct: 125 IADFQYKCTDYYDPADESGLLWSDAELNIQWPI---DAPLLSEKDAQLPTLMDI 175
>gi|319902158|ref|YP_004161886.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides helcogenes P
36-108]
gi|319417189|gb|ADV44300.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides helcogenes P
36-108]
Length = 182
Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 112/173 (64%), Gaps = 4/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
I+ V +++ + F D+RG+F + + + + + + DV F+QDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPKVFSDARGYFMEAFKEEEFR-IHVGDVHFIQDNESKS-SFGVLRGLHYQQ 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Y+QAKLVR + GR+ D+AVD+RR+S T+G +VS+E+S N Q +IP GFAHGF+ L
Sbjct: 65 GEYSQAKLVRVLKGRVLDVAVDLRRSSSTFGKYVSVELSEENKRQFFIPRGFAHGFLVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
YKV + Y+ + ++ + + D++I I WP+ + L +S+KD++ N
Sbjct: 125 DEAVFTYKVDNAYAPQAEASIRFNDETIGIEWPVSEKQLL-LSDKDEHAVSFN 176
>gi|218663788|ref|ZP_03519718.1| putative methyltransferase [Rhizobium etli IE4771]
Length = 470
Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 97/162 (59%), Gaps = 3/162 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++T+ ++ GL V+ Q N S + GT+RG+H+Q P +AKLVR + GR
Sbjct: 311 DDRGMFARTFCAESFAAHGLASVYPQCNLSQNHRRGTLRGMHYQADPKPEAKLVRAVRGR 370
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+A+D+RR SPTY W S+E+ A YIP G AHGF+TLE + E+ Y+++ Y
Sbjct: 371 VFDVALDLRRESPTYLKWASVELDATIHNAFYIPAGCAHGFLTLEDDCELFYQMSAIYLP 430
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E GV W D + I WP ++ +SE+D L +Q S
Sbjct: 431 ELARGVRWDDPAFSIAWPFTPSV---ISERDVALESYSQEKS 469
>gi|332702170|ref|ZP_08422258.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio africanus str.
Walvis Bay]
gi|332552319|gb|EGJ49363.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio africanus str.
Walvis Bay]
Length = 177
Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 97/174 (55%), Gaps = 5/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V ++K F D+RG+F +T+ + + G+ FVQDN S S G +RGLHFQR
Sbjct: 7 HIAGVLLIKPHVFGDNRGFFLETFQQERYRSAGIALPFVQDNRSRS-RKGILRGLHFQRQ 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLV GR+FD+AVDIR SPT+G W + Q+++P G AHGF L
Sbjct: 66 -HPQGKLVSVARGRVFDVAVDIRPESPTFGQWFGAVLDDEKHHQLWVPPGLAHGFCVLSD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ +YK TDFY E + V W D I I WP + IL SEKD P L +
Sbjct: 125 VADFVYKCTDFYYSEDEGSVRWDDPEIGIGWPFEEPIL---SEKDAKAPLLRDL 175
>gi|288802553|ref|ZP_06407992.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella melaninogenica
D18]
gi|288335081|gb|EFC73517.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella melaninogenica
D18]
Length = 184
Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 107/169 (63%), Gaps = 7/169 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V I++ + F D RG+F +++ S+ K +G F+QDN S S G +RGLH+Q
Sbjct: 8 IDGVWIIEPKVFNDDRGYFFESFKQSEFDKNVGYHVDFIQDNESKS-SYGVLRGLHYQEG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQAKLVR I G++ D+AVD+R++SPT+G +V +E+S N Q ++P GFAHGF+ L
Sbjct: 67 DTAQAKLVRVIKGKVVDVAVDLRKSSPTFGKYVMVELSDKNKRQFFVPRGFAHGFLVLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQN 168
YKV + YS + ++ + W D+++ + WP+ D IL S+KD N
Sbjct: 127 EAIFTYKVDNVYSPQTEASLRWNDETVAVKWPIDAKDVIL---SDKDLN 172
>gi|256004336|ref|ZP_05429318.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum DSM
2360]
gi|255991770|gb|EEU01870.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum DSM
2360]
Length = 139
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/132 (48%), Positives = 91/132 (68%), Gaps = 3/132 (2%)
Query: 39 FVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEI 98
FVQDNH S G +RG+HFQR + Q +LVR I G+++D+AVD+R+NSPT+G W +E+
Sbjct: 3 FVQDNHIKS-RIGVLRGIHFQRK-FPQGRLVRVIKGKVYDVAVDLRKNSPTFGKWYGIEL 60
Query: 99 SANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTI 158
SA N YIP F H F+TLE +TEV+ K T+ Y E +SG+ + D ++I WP ++
Sbjct: 61 SAENKKMFYIPENFGHAFLTLEDDTEVLCKTTNVYRPEFESGIIYNDPELNIDWPQIEGD 120
Query: 159 LPSVSEKDQNLP 170
+ +SEKD+NLP
Sbjct: 121 I-VLSEKDKNLP 131
>gi|282858700|ref|ZP_06267854.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella bivia JCVIHMP010]
gi|282588504|gb|EFB93655.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella bivia JCVIHMP010]
Length = 184
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 107/168 (63%), Gaps = 7/168 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V +++ + F+D RG+F +++ + + +G F+QDN S S G +RGLH+Q+
Sbjct: 7 TIKGVWVIEPKIFKDDRGYFFESFRQDEFDRNVGYHVEFIQDNESKS-SYGVLRGLHYQQ 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
++QAKLVR I G++ D+AVD+RR+S TYG +V++E+S N Q +IP GFAHGF+ L
Sbjct: 66 GEFSQAKLVRVIKGKVIDVAVDLRRSSLTYGKYVAVELSDENKRQFFIPRGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKD 166
YKV + Y+ + ++ V W D++I I WP+ D +L SEKD
Sbjct: 126 DEAIFTYKVDNIYAPQSEASVRWNDETIGIDWPIDPKDVVL---SEKD 170
>gi|289672184|ref|ZP_06493074.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
syringae FF5]
Length = 149
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/141 (46%), Positives = 94/141 (66%), Gaps = 3/141 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ + F D RG+F +++++K + GL FVQDNHS S G +RGLH+Q A
Sbjct: 11 VLILEPKVFGDERGFFYESFNAKAFQAATGLTREFVQDNHSRS-QRGVLRGLHYQ-IENA 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR G++ D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L + E
Sbjct: 69 QGKLVRVTVGKVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLSEHAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQD 145
+YK TD+Y+ + +AW D
Sbjct: 129 FLYKTTDYYTPSAERCIAWDD 149
>gi|157413784|ref|YP_001484650.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Prochlorococcus marinus str. MIT 9215]
gi|157388359|gb|ABV51064.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Prochlorococcus marinus str. MIT 9215]
Length = 192
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 100/164 (60%), Gaps = 2/164 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
IN V ++K F D RG+F ++++S K++ F QDNHS S G +RG+H+Q P
Sbjct: 14 INEVILIKPDIFSDKRGFFYESWNSNSFKKIIGNTNFCQDNHSNSIK-GVLRGIHYQLNP 72
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLVRC G I+D+AVD+R+ S TY W+ ++++ N +IP GF HGF+TL
Sbjct: 73 TAQGKLVRCTKGEIYDVAVDLRKRSNTYKEWIGVKLNELNKNLFWIPEGFGHGFLTLSDI 132
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
EV YKVT + + + W D ++I WP L+ I P +S+KD
Sbjct: 133 AEVQYKVTKPWDKLSEKSLLWNDSDLNIDWP-LNKISPIISKKD 175
>gi|311744958|ref|ZP_07718743.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Algoriphagus sp. PR1]
gi|126577465|gb|EAZ81685.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Algoriphagus sp. PR1]
Length = 184
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 5/167 (2%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
FED RG+F +++ S L++ G ++ ++QDN SFS GT+RGLHFQR +AQAKLVR I
Sbjct: 20 FEDQRGYFFESFRSDWLEQHGCKENWIQDNQSFS-QKGTVRGLHFQRGDHAQAKLVRVIQ 78
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G++ D+ VD+R+ S T+G S + +Y+PTGFAHGF LE + +YK +++Y
Sbjct: 79 GKVLDVVVDLRKGSETFGAHYSTILDTEQHNLLYVPTGFAHGFSVLE-DAIFVYKCSNYY 137
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
E + G+ W D + I W ++D P +SEKD L + E
Sbjct: 138 HKESEGGILWNDSHLGIDW-MVDN--PIISEKDAQWQKLQEFKETSE 181
>gi|284047955|ref|YP_003398294.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidaminococcus fermentans
DSM 20731]
gi|283952176|gb|ADB46979.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidaminococcus fermentans
DSM 20731]
Length = 201
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 96/165 (58%), Gaps = 2/165 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ + I++ D+RG+F +TY+ K ++E G FVQDN S S G +RGLHFQ+
Sbjct: 11 GIDGLCIIEPAVHGDARGYFMETYNKKDMEEAGFHIDFVQDNQSMSTK-GVLRGLHFQKH 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVD+R +S TYG W +E++ N Q IP GFAHGF+ L
Sbjct: 70 -CPQCKLVRAVRGSVFDVAVDLRADSKTYGKWYGVELTDENKKQFLIPEGFAHGFLVLSD 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E YKV D++ + G+AW D I I WP + P + +
Sbjct: 129 EAEFCYKVNDYWHPNDEGGMAWNDPEIGIKWPQVVGEYPGSASSE 173
>gi|307153968|ref|YP_003889352.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 7822]
gi|306984196|gb|ADN16077.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 7822]
Length = 180
Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 102/167 (61%), Gaps = 7/167 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ- 59
I V I++ + F D RG+F ++++ K ++ + FVQDNHS S +RGLH+Q
Sbjct: 7 EIPDVLIIEPKVFGDDRGFFYESFNQKAFQDKTEIITDFVQDNHSRSLK-NVLRGLHYQI 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P Q KLVR + G +FD+AVDIR +SPT+G WV +SA N Q +IP GFAHGF+ L
Sbjct: 66 QQP--QGKLVRVVVGEVFDVAVDIRSSSPTFGQWVGCLLSAENKRQFWIPAGFAHGFLVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y+ E++ + W D + I WPL P +S KD
Sbjct: 124 SEAAEFLYKTTDYYAPEYERSILWNDPDLAIDWPLQGE--PILSNKD 168
>gi|116629771|ref|YP_814943.1| dTDP-4-dehydrorhamnose 3,5-epimerase related enzyme [Lactobacillus
gasseri ATCC 33323]
gi|300361535|ref|ZP_07057712.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus gasseri JV-V03]
gi|311110586|ref|ZP_07711983.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus gasseri MV-22]
gi|116095353|gb|ABJ60505.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus gasseri ATCC
33323]
gi|300354154|gb|EFJ70025.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus gasseri JV-V03]
gi|311065740|gb|EFQ46080.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus gasseri MV-22]
Length = 202
Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F +T++ + + + G FVQDN S S G +RGLHFQ+ Y Q KLVR + G
Sbjct: 26 DDRGYFMETFNQRDMMDAGFSINFVQDNQSSS-TKGVLRGLHFQKK-YPQIKLVRAVRGS 83
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R S TYG W +E++A N Q IP GFAHGF+ L E YKV DF+
Sbjct: 84 VFDVAVDLRSESKTYGKWYGVELTAENKKQFLIPQGFAHGFLVLSDVAEFCYKVNDFWHP 143
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPS 161
+ G+AW D I I WP L P
Sbjct: 144 NDEGGMAWNDPEIGIEWPHLKGDYPG 169
>gi|189424897|ref|YP_001952074.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geobacter lovleyi SZ]
gi|189421156|gb|ACD95554.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geobacter lovleyi SZ]
Length = 181
Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 103/162 (63%), Gaps = 5/162 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ + F D RG+F ++++ ++ K GL+ FVQ NHS S +RGLH+Q +
Sbjct: 11 VLILEPKVFGDDRGFFFESFNERVWQKATGLKRSFVQHNHSRSAR-NVLRGLHYQIQ-HP 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR I+G +FD+AVDIRR+SPT G W +SA N Q+++P GFAHGF + E
Sbjct: 69 QGKLVRVISGEVFDVAVDIRRSSPTCGKWFGTTLSAENKRQMWVPEGFAHGFCVTSDHAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+Y TD+++ E + +AW D +I+I+WPL P +S KD
Sbjct: 129 FLYLTTDYWAPEFERTIAWDDPAINISWPLCGE--PLLSAKD 168
>gi|167950764|ref|ZP_02537838.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 162
Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 104/162 (64%), Gaps = 7/162 (4%)
Query: 17 SRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQ-RPPYAQAKLVRCIAG 74
+RG+F +++++K ++ DV FVQDNHS S +RGLH+Q + P Q KLVR G
Sbjct: 3 ARGFFLESFNAKAFQQATGSDVRFVQDNHSRS-QRNVLRGLHYQIQQP--QGKLVRVAQG 59
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+FD+AVDIRR+SP++G WV +E++ N Q+++P GFAHGF+ L + + +YK TD+Y+
Sbjct: 60 AVFDVAVDIRRSSPSFGQWVGVELTEENHRQLWVPAGFAHGFVVLSESADFLYKTTDYYA 119
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EH+ + W D I I WP+ + +S KD+ L Q +
Sbjct: 120 PEHERCIRWDDPEIGIEWPINADL--QLSSKDKEGLLLRQAE 159
>gi|126660836|ref|ZP_01731930.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. CCY0110]
gi|126617887|gb|EAZ88662.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. CCY0110]
Length = 181
Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 104/167 (62%), Gaps = 7/167 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ-R 60
I V I++ R F D RG+F ++Y+ K E G++ FVQDNHS S +RGLH+Q +
Sbjct: 8 IPDVVIIEPRVFGDDRGFFYESYNQKAFTEATGIERNFVQDNHSRS-QKNVLRGLHYQIQ 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLVR + G + D+AVDIR++S T+G WVS ++A N Q ++P GFAHGF+ L
Sbjct: 67 QP--QGKLVRVVVGEVLDVAVDIRKSSSTFGQWVSCLLNAENKRQFWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E +YK T++Y+ ++ + W D + I W L D P +S+KDQ
Sbjct: 125 DVAEFLYKTTNYYAPPYERSILWNDPDLSIDWQLKDE--PKLSKKDQ 169
>gi|21244308|ref|NP_643890.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas axonopodis pv.
citri str. 306]
gi|21109959|gb|AAM38426.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas axonopodis pv.
citri str. 306]
Length = 185
Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 98/170 (57%), Gaps = 5/170 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ F D RG+F +T++++ + GL FVQ N S S G +RGLH+Q P Q K
Sbjct: 13 VIEPAVFGDERGYFFETWNAERFGQHGLPTKFVQSNVSTSAK-GVLRGLHYQWP-RPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G ++D+AVD+R SP +G W ++ +SA N Q +IP GFAHGF L Y
Sbjct: 71 LVSVLEGEVYDVAVDVRHGSPNFGQWAAVVLSAENKKQFWIPEGFAHGFAVLSERAVFSY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
TD Y E D+GV W D +I I WP+ + +L S KD PFL + +
Sbjct: 131 LCTDVYVKEADAGVRWDDAAIGIDWPISNPLL---SAKDSAAPFLGDVPA 177
>gi|114563924|ref|YP_751438.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella frigidimarina
NCIMB 400]
gi|114335217|gb|ABI72599.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella frigidimarina
NCIMB 400]
Length = 189
Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 98/166 (59%), Gaps = 7/166 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQD-----VFVQDNHSFSFDCGTIRGLHFQR 60
V I RKF D RG+F +T + +Q+ + VQ+N S S + +RGLHFQ+
Sbjct: 11 VMIFSPRKFIDERGFFMETLRQNSFSDAFIQNKMDVPLLVQENQSRSVN-NVLRGLHFQQ 69
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+ Q KL+R G IFD+AVDIR+ S T+G W+ EIS NG Q++IP GFAHGF L
Sbjct: 70 H-FPQGKLIRVARGTIFDVAVDIRQESKTFGQWIGQEISDENGYQMWIPAGFAHGFYVLS 128
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
++IYK + +Y + + +AW D ++I WPL P VS+KD
Sbjct: 129 DIADIIYKCSQYYQPDDEQTIAWNDPMLNIQWPLKQHPAPIVSDKD 174
>gi|325928551|ref|ZP_08189739.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas perforans 91-118]
gi|325541090|gb|EGD12644.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas perforans 91-118]
Length = 174
Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 98/170 (57%), Gaps = 5/170 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ F D RG+F +T++++ + GL FVQ N S S G +RGLH+Q P Q K
Sbjct: 2 VIEPAVFGDERGYFFETWNAERFGQHGLPTKFVQSNVSTSAK-GVLRGLHYQWP-RPQGK 59
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G ++D+AVD+R SP +G W ++ +SA N Q +IP GFAHGF L Y
Sbjct: 60 LVSVLEGEVYDVAVDVRHGSPNFGQWAAVVLSAENKKQFWIPEGFAHGFAVLSERAVFSY 119
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
TD Y E D+GV W D +I I WP+ + +L S KD PFL + +
Sbjct: 120 LCTDVYVKEADAGVRWDDAAIGIDWPISNPLL---SAKDSAAPFLGDVPA 166
>gi|154253788|ref|YP_001414612.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Parvibaculum lavamentivorans
DS-1]
gi|154157738|gb|ABS64955.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Parvibaculum lavamentivorans
DS-1]
Length = 184
Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 98/172 (56%), Gaps = 3/172 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
+++L R+ D RGW + + + L G Q N + + + GT+RG+HFQ PP+ +
Sbjct: 15 LKLLHRRRMGDDRGWLERLFCADELASAGWVWPIAQINRTLTVNKGTVRGMHFQHPPHEE 74
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKLV C+ G + D+AVD+R+NSPTY W +S N + IP GFAHGF TL + E+
Sbjct: 75 AKLVTCLRGEVLDVAVDLRKNSPTYLGWHGEILSGKNAASLLIPPGFAHGFQTLTSDVEM 134
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
Y + Y+ + + GV D +I I WPL + SE+D+N + + ++
Sbjct: 135 FYVHSAPYAPQAEDGVRADDPAIAIAWPLE---IAERSERDRNFSLVEEREA 183
>gi|193214636|ref|YP_001995835.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chloroherpeton thalassium
ATCC 35110]
gi|193088113|gb|ACF13388.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chloroherpeton thalassium
ATCC 35110]
Length = 183
Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 96/163 (58%), Gaps = 2/163 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I++ + F D RG+F ++++ + L +F QDN S S G +RGLH+Q PYAQ
Sbjct: 11 VLIVEPKIFGDERGYFYESFNLAAFSKHNLPTLFWQDNISRSVK-GVLRGLHYQLNPYAQ 69
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR G +FD+AVD+R+NSPT+G W L +SA N Q++IP GFAHGF
Sbjct: 70 GKLVRVSEGEVFDVAVDLRKNSPTFGKWFGLTLSAENKKQLWIPPGFAHGFCVTSDFAVF 129
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YK T Y+ + + W D + I WP LD +SEKD+N
Sbjct: 130 NYKATTKYAPSSERAILWNDAELGIEWPKLDCDW-ILSEKDKN 171
>gi|332715750|ref|YP_004443216.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Agrobacterium sp. H13-3]
gi|325062435|gb|ADY66125.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Agrobacterium sp. H13-3]
Length = 175
Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 100/172 (58%), Gaps = 3/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ T DSRG F++T+ + + L F Q + S S T+RGLHFQRP
Sbjct: 7 KIEGLWVVSTVPVRDSRGSFARTFCKREFESNALVSDFSQHSLSLSKLKHTVRGLHFQRP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ + KLV C+ G I+D+AVD+RR S TY WV + +SA+NG Q YIP GFAHGF +L
Sbjct: 67 PHQETKLVSCVKGSIWDVAVDLRRGSSTYLQWVGMVLSADNGAQFYIPEGFAHGFQSLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ V Y ++ Y+ +G+ + +I + WP ++ +SEKD P L
Sbjct: 127 DVAVSYLISAPYAEASAAGIRYDAPAIGVEWPAPPSV---ISEKDLGWPALQ 175
>gi|110589476|gb|ABG77247.1| dTDP-4-dehydrorhamnose 35-epimerase RbfC [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 163
Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 104/162 (64%), Gaps = 7/162 (4%)
Query: 17 SRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQ-RPPYAQAKLVRCIAG 74
+RG+F +++++K ++ DV FVQDNHS S +RGLH+Q + P Q KLVR G
Sbjct: 4 ARGFFLESFNAKAFQQATGSDVRFVQDNHSRS-QRNVLRGLHYQIQQP--QGKLVRVAQG 60
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+FD+AVDIRR+SP++G WV +E++ N Q+++P GFAHGF+ L + + +YK TD+Y+
Sbjct: 61 AVFDVAVDIRRSSPSFGQWVGVELTEENHRQLWVPAGFAHGFVVLSESADFLYKTTDYYA 120
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EH+ + W D I I WP+ + +S KD+ L Q +
Sbjct: 121 PEHERCIRWDDPEIGIEWPINADL--QLSSKDKEGLLLRQAE 160
>gi|126662749|ref|ZP_01733748.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Flavobacteria bacterium
BAL38]
gi|126626128|gb|EAZ96817.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Flavobacteria bacterium
BAL38]
Length = 183
Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 110/168 (65%), Gaps = 7/168 (4%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
I++ + +D RG+F ++++ ++ Q+V FVQDN SFS G +RGLH+Q +AQA
Sbjct: 13 IIEPKIIQDERGYFMESFNHNTFQKGVGQNVNFVQDNQSFS-SKGVLRGLHYQCDEHAQA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR + G + D+AVD+R +S TYG + ++ +SA N +Q ++P GFAHGF+ L +
Sbjct: 72 KLVRVLQGEVLDVAVDLRPDSETYGQYEAILLSAENQMQFFVPRGFAHGFLVLSDSATFF 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFL 172
YK +FY+ E + G+ + D++I+I W PL + I +S+KD+ LP L
Sbjct: 132 YKCDNFYNKESEGGIIYNDETINIDWNFPLQELI---ISDKDKVLPNL 176
>gi|307309425|ref|ZP_07589084.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium meliloti
BL225C]
gi|306900155|gb|EFN30774.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium meliloti
BL225C]
Length = 179
Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ ++ D RG+FS+ + L++ G Q NH+ + GTIRG+HFQRPP+ +AK
Sbjct: 16 VIERKQMGDERGFFSRFFCRDELRDFGADGTISQINHTLTRAKGTIRGMHFQRPPHDEAK 75
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
V C+ G +FD+AVDIR +SPTY W +S N + IP GFAHGF TL N E++Y
Sbjct: 76 FVSCLVGAVFDVAVDIRPDSPTYLQWHGEILSGENARSMMIPGGFAHGFQTLSENCELVY 135
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
Y+ + + G+ D + I+WPL + +SE+D+ F++
Sbjct: 136 LHDKPYAPDAEGGLNPLDPRLAISWPLE---VAQMSERDRAFAFIS 178
>gi|254476304|ref|ZP_05089690.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruegeria sp. R11]
gi|214030547|gb|EEB71382.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruegeria sp. R11]
Length = 192
Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 95/160 (59%), Gaps = 3/160 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F + + ++ E GL + Q N S S GT+RG+H+Q P+A+ KL+ C+AGR
Sbjct: 21 DPRGAFGRLFCAETFAEAGLVSQWAQTNLSRSTRRGTLRGMHYQTAPFAETKLLVCLAGR 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
I D+ VD+R S TYG W +LE+ +G +YIP G AHGF TL + + Y + YS
Sbjct: 81 IHDVLVDLRPQSATYGQWCALELDGASGSGVYIPEGIAHGFQTLSDDVMLHYSHSRPYSP 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
H +GVA+ D + I WPL +VSE+D LP L +I
Sbjct: 141 AHQAGVAFDDPDLAIQWPLPPV---AVSERDLTLPRLCEI 177
>gi|83814948|ref|YP_444733.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salinibacter ruber DSM 13855]
gi|83756342|gb|ABC44455.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salinibacter ruber DSM 13855]
Length = 186
Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 98/170 (57%), Gaps = 5/170 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
VR+++ + D RG F++ ++ + GL FVQDN S S + G +RGLHFQ P AQ
Sbjct: 11 VRLIEPDVYTDDRGSFAELWNVRDYGHHGLDVTFVQDNLSRSRE-GVLRGLHFQNP-RAQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KL+ + G ++D+ VD+R + T+G W +SA N Q+Y+P G+AHGF+
Sbjct: 69 GKLISVLEGAVYDVVVDVRAGADTFGAWEGQVLSAENARQLYVPEGYAHGFVATSGEVLF 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK TDFY E D V W D ++ I WP D IL SEKD P L++I
Sbjct: 129 HYKCTDFYHPEADRTVRWDDPALGIDWPTEDPIL---SEKDAGAPALDEI 175
>gi|325275469|ref|ZP_08141397.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas sp. TJI-51]
gi|324099400|gb|EGB97318.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas sp. TJI-51]
Length = 181
Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 108/173 (62%), Gaps = 10/173 (5%)
Query: 1 MNINP-----VRILKTRKFEDSRGWFSQTYSSK-LLKELGLQDVFVQDNHSFSFDCGTIR 54
MNI P V I++ + DSRG+F + ++++ ++ G+ FVQDNHS S G +R
Sbjct: 1 MNIIPTEIPDVLIIEPTVYGDSRGFFFEAFNAREFARQTGVNVEFVQDNHSSSVK-GVLR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
GLHFQ Q KLVR + G I D+A+D+R++SPT+G WV++++SA N Q++IP GFAH
Sbjct: 60 GLHFQVE-NTQGKLVRVVQGEIRDVALDVRKSSPTFGQWVAVDLSAANHRQLWIPAGFAH 118
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
GF L + E +YK TD+Y+ D + W D + I W L P +S+KD+
Sbjct: 119 GFAVLSESAEFLYKTTDYYNPGADRCIRWDDPHLAIDWGLQQP--PLLSDKDK 169
>gi|77164293|ref|YP_342818.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosococcus oceani ATCC
19707]
gi|254434100|ref|ZP_05047608.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosococcus oceani AFC27]
gi|76882607|gb|ABA57288.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosococcus oceani ATCC
19707]
gi|207090433|gb|EDZ67704.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosococcus oceani AFC27]
Length = 181
Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 103/174 (59%), Gaps = 9/174 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ--RPP 62
V +++ R F D RG+F ++Y+ + Q FVQDNHS S +RGLH+Q +P
Sbjct: 11 VLLIEPRVFGDERGFFFESYNRAAFAAATDTQVEFVQDNHSRSLQ-HVLRGLHYQICQP- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR +AG +FD+AVD+RR SP +G WV +SA N Q++IP GFAHGF+ L
Sbjct: 69 --QGKLVRVVAGEVFDVAVDLRRRSPGFGRWVGYRLSAENRHQLWIPGGFAHGFLVLSEY 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK T +Y+ E++ + W D + I WPL P +S KDQ N+ +
Sbjct: 127 AEFLYKTTAYYAPEYERCIRWDDSDLAIDWPLDGR--PLISAKDQAGCAFNEAE 178
>gi|302880019|ref|YP_003848583.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gallionella capsiferriformans
ES-2]
gi|302582808|gb|ADL56819.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gallionella capsiferriformans
ES-2]
Length = 181
Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 101/160 (63%), Gaps = 5/160 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
IL+ + F D RG+F ++++ + EL +D FVQDNHS S G +RGLH+Q + QA
Sbjct: 13 ILEPKVFGDDRGFFYESFNRQKFSELTGRDADFVQDNHSRSVK-GVLRGLHYQ-IQHPQA 70
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR + G + D+AVDIR++SPT+G V+LE+SA N +IP GFAHGF+ L E +
Sbjct: 71 KLVRVVQGAVLDVAVDIRKSSPTFGQHVALELSAENKRMFWIPEGFAHGFVVLSDTAEFL 130
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK TD++ E + + W D I I W + P++S KD
Sbjct: 131 YKTTDYWYPEFERSIVWDDPEIAIDWQV--QAPPALSAKD 168
>gi|150026507|ref|YP_001297333.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Flavobacterium psychrophilum
JIP02/86]
gi|149773048|emb|CAL44532.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Flavobacterium psychrophilum
JIP02/86]
Length = 183
Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 103/172 (59%), Gaps = 3/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
N+ +L+ + F D RG+F ++++ K +G F+QDN S+S G +RGLH+Q
Sbjct: 7 NLAGCFVLEPKIFHDDRGYFMESFNENTFEKGIGQNVHFIQDNQSYS-SKGVLRGLHYQT 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AQAKLVR + G + D+AVDIR SPTYG S+ +SA N Q+YIP GFAHGF+
Sbjct: 66 GAHAQAKLVRVLQGEVLDVAVDIRPQSPTYGQSFSILLSAENQKQLYIPRGFAHGFLVTS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
YK +FY+ E + G+ + D +++I W + L +SEKD LP L
Sbjct: 126 ETATFFYKCDNFYNKESEGGLIYNDPTLNIDWNFPEKEL-IISEKDIILPTL 176
>gi|152978508|ref|YP_001344137.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus succinogenes
130Z]
gi|150840231|gb|ABR74202.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus succinogenes
130Z]
Length = 180
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 99/165 (60%), Gaps = 4/165 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++L+ D RG+F +T+ + K+ FVQ+NHS S G +RGLH+Q
Sbjct: 7 KIPEVKLLEPTVLGDERGFFMETFRDEWFKQNVADRTFVQENHSKSVK-GVLRGLHYQ-T 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 65 ENTQGKLVRVVQGEVFDVAVDMRKSSPTFGQWVGEILSAENKRQLWVPEGFAHGFYVLSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E YK TD+Y+ + + + W D ++ I W L+ PS+S KD
Sbjct: 125 TAEFTYKCTDYYNPKAEHSLLWNDPTVGIMWNLVGE--PSLSTKD 167
>gi|218779339|ref|YP_002430657.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfatibacillum
alkenivorans AK-01]
gi|218760723|gb|ACL03189.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfatibacillum
alkenivorans AK-01]
Length = 184
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 95/170 (55%), Gaps = 5/170 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I++ F D RG F +TY S GL FVQDN S S + +RGLH+Q + Q
Sbjct: 11 VLIIEPSVFSDHRGLFMETYHSGRFAAHGLDVKFVQDNLSISGE-NVLRGLHYQIT-HVQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKLV+ + GRIFD+AVD+R+ SPT+G W + + Q++IP GFAHGF L V
Sbjct: 69 AKLVQAVQGRIFDVAVDVRKGSPTFGQWTGAVLDDESHRQMFIPAGFAHGFCVLSKEARV 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK Y+ + + W D + + WPL D IL SEKDQ P L I
Sbjct: 129 CYKCDALYAPGDEGTLLWSDPDVGVEWPLSDPIL---SEKDQAGPRLKDI 175
>gi|159186325|ref|NP_355864.2| dTDP-4-dehydrorhamnose 3,5-epimerase [Agrobacterium tumefaciens
str. C58]
gi|159141459|gb|AAK88649.2| dTDP-4-dehydrorhamnose 3,5-epimerase [Agrobacterium tumefaciens
str. C58]
Length = 175
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 99/169 (58%), Gaps = 3/169 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ T DSRG F++T+ + + L F Q + S S TIRGLHFQRP
Sbjct: 7 KIEGLLVVNTIPVRDSRGSFARTFCKREFESNALVSDFSQHSLSLSKLKHTIRGLHFQRP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ + KLV C+ G I+D+AVD+RR SPTY WV +SA+NG Q YIP GFAHGF +L
Sbjct: 67 PHQETKLVSCVKGSIWDVAVDLRRGSPTYLQWVGTVLSADNGAQFYIPEGFAHGFQSLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
+ V Y ++ Y+ +G+ + +I + WP ++ +SEKD P
Sbjct: 127 DVAVSYLISVPYAEASAAGIRHDEPAIGVEWPAPASV---ISEKDLGWP 172
>gi|289668426|ref|ZP_06489501.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 185
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 98/170 (57%), Gaps = 5/170 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ F D RG+F +T++++ + GL FVQ N S S G +RGLH+Q P Q K
Sbjct: 13 VIEPAVFGDERGYFFETWNAERFGQHGLPTQFVQSNVSTSAK-GVLRGLHYQWP-RPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G ++D+AVD+R SP +G W ++ +SA N Q +IP GFAHGF L Y
Sbjct: 71 LVSVLEGEVYDVAVDVRHGSPNFGQWAAVVLSAENKKQFWIPEGFAHGFAVLSERAVFSY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
TD Y E D+GV W D +I I WP+ + +L S KD PFL + +
Sbjct: 131 LCTDVYVKEADAGVRWDDAAIGIDWPISNPLL---SAKDAAAPFLADVPA 177
>gi|58580417|ref|YP_199433.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58425011|gb|AAW74048.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 185
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 98/170 (57%), Gaps = 5/170 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ F D RG+F +T++++ + GL FVQ N S S G +RGLH+Q P Q K
Sbjct: 13 VIEPAVFGDERGYFFETWNAERFGQHGLPTQFVQSNVSTSAK-GVLRGLHYQWP-RPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G ++D+AVD+R SP +G W ++ +SA N Q +IP GFAHGF L Y
Sbjct: 71 LVSVLEGEVYDVAVDVRHGSPNFGQWAAVVLSAENKKQFWIPEGFAHGFAVLSERAVFSY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
TD Y E D+GV W D +I I WP+ + +L S KD PFL + +
Sbjct: 131 LCTDVYVKEADAGVRWDDAAIGIDWPISNPLL---SAKDAAAPFLADVPA 177
>gi|126741343|ref|ZP_01757019.1| CDP-4-dehydro-6-deoxy-D-glucose 3-epimerase [Roseobacter sp.
SK209-2-6]
gi|126717548|gb|EBA14274.1| CDP-4-dehydro-6-deoxy-D-glucose 3-epimerase [Roseobacter sp.
SK209-2-6]
Length = 184
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 101/161 (62%), Gaps = 3/161 (1%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
ED+RG F + +K+L E GL +VQ N S + GT+RG+H+Q PP+A+ KL+ C++G
Sbjct: 23 EDNRGSFGRLSCAKMLDEAGLNSTWVQSNLSRTATRGTLRGMHYQTPPFAEVKLLTCLSG 82
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+++D+ VD+R +SP+Y W S+ + +YIP G AHGF +L + + Y + +S
Sbjct: 83 QVYDVLVDLRPSSPSYLQWTSIVLEGARADTLYIPAGIAHGFQSLSDDVTLHYSHSQPFS 142
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ +G++++D I I W L T+L SE+D LPFL+ I
Sbjct: 143 PAYQAGISYRDPQIAIQWELPVTLL---SERDAALPFLSDI 180
>gi|303233353|ref|ZP_07320022.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Atopobium vaginae PB189-T1-4]
gi|302480482|gb|EFL43573.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Atopobium vaginae PB189-T1-4]
Length = 205
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 99/173 (57%), Gaps = 8/173 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V I+ T+++ D+RG+F +TY G+ FVQDN S S G +RGLHFQ
Sbjct: 22 SIRDVIIVDTKQYGDARGYFMETYKESDFAAGGISTTFVQDNQSSSTK-GVLRGLHFQ-I 79
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ QAKLVR + G +FD+AVD+R S T+G W +E+SA N Q +IP GFAHGF L
Sbjct: 80 EHPQAKLVRVVRGCVFDVAVDLRAGSDTFGMWEGVELSAENHRQFFIPRGFAHGFFVLSD 139
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL---LDTILPS---VSEKDQN 168
E YK D Y + G+ W D + I+WP D PS +S+KD +
Sbjct: 140 EAEFCYKCDDVYHPGDEGGLMWNDPDLAISWPAPCGCDRFSPSQVILSDKDTH 192
>gi|312622139|ref|YP_004023752.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202606|gb|ADQ45933.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caldicellulosiruptor
kronotskyensis 2002]
Length = 186
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 95/170 (55%), Gaps = 6/170 (3%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
ED RG F + Y+S + L + + S IRGLHFQ PPY AK+V C+ G
Sbjct: 22 EDRRGAFVKVYNSDFYSSILLNTSIKESYFTISHK-NVIRGLHFQLPPYEVAKIVYCVEG 80
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
I D+ VD+R+ SPTYG + ++A +YIP G AHG+ L VIY VT+ YS
Sbjct: 81 EIMDVVVDLRKGSPTYGKYDIFYLNAQKSNILYIPEGLAHGYCVLSEKAIVIYNVTNVYS 140
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGL 184
EHD+G+ W S I WP+ + IL SE+D+NLP +PF+Y L
Sbjct: 141 KEHDTGIRWD--SAGIPWPVDNPIL---SERDKNLPEFKYFRTPFKYKDL 185
>gi|288927846|ref|ZP_06421693.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella sp. oral taxon 317
str. F0108]
gi|288330680|gb|EFC69264.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella sp. oral taxon 317
str. F0108]
Length = 182
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 105/165 (63%), Gaps = 4/165 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V +++ + F D RG+F +++ + K +G D FVQDN S S G +RGLH+Q+
Sbjct: 7 ELQGVFVIQPKVFNDERGYFFESWKKEEFEKHVGKVD-FVQDNESKS-SFGVLRGLHYQK 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+QAKLVR I GR+ D+AVD+R++SPT+G +V++E+S N Q++IP GFAHGF+ L
Sbjct: 65 GEASQAKLVRVIKGRVLDVAVDLRKSSPTFGKYVAVELSDENKKQLFIPRGFAHGFLVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSE 164
YKV + Y + ++ + W D+++ I WP+ D I+ S +
Sbjct: 125 PEAVFTYKVDNVYCPQSETSIRWNDETLGIEWPIEYDKIVTSAKD 169
>gi|115526250|ref|YP_783161.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
BisA53]
gi|115520197|gb|ABJ08181.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
BisA53]
Length = 177
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++++ ++ + DSRG F++ + L GL VQ + SF+ CGT+RGLH+Q
Sbjct: 6 LDLDGAVLIDVDRIVDSRGHFARVFCIDELTAAGLDAGIVQASVSFNNKCGTLRGLHWQA 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
A+AK VRC G IFD VD+R SPTY WVS+E+S +N +YIP GFAHGF TL
Sbjct: 66 GAQAEAKYVRCTRGAIFDAIVDLRPQSPTYLRWVSIELSQDNQRTLYIPKGFAHGFQTLC 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
+TE+ Y++T+ ++ E G + D + I WP + + +S+KD P
Sbjct: 126 DDTEIFYQMTERFAPEAACGARFDDAAFGIVWPKTEQRI--ISDKDLGYP 173
>gi|224539908|ref|ZP_03680447.1| hypothetical protein BACCELL_04819 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518462|gb|EEF87567.1| hypothetical protein BACCELL_04819 [Bacteroides cellulosilyticus
DSM 14838]
Length = 182
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 107/170 (62%), Gaps = 4/170 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
I+ V +++ + D RG+F + + + K + + DV F+QDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPKVLRDERGYFMEAFKEEEFK-MHIGDVHFIQDNESKS-SFGVLRGLHYQK 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Y Q+KLVR I G++ D+AVD+R++SPT+G +VS E+S N Q +IP GFAHGF+ L
Sbjct: 65 GEYCQSKLVRVIKGKVLDVAVDLRQSSPTFGKYVSAELSEENQRQFFIPRGFAHGFLVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
IYKV + Y + ++ + + D++I I WP+ + L +S KD+ P
Sbjct: 125 EEAIFIYKVDNAYVPQAEASIRFNDETIGIEWPIAEEQL-LLSPKDKTAP 173
>gi|166362759|ref|YP_001655032.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Microcystis aeruginosa
NIES-843]
gi|166085132|dbj|BAF99839.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Microcystis aeruginosa
NIES-843]
Length = 181
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 100/163 (61%), Gaps = 5/163 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I++ + + D RG+F ++++ K +E G+ FVQDNHS S +RGLH+Q P
Sbjct: 11 VLIIEPQVYGDDRGFFLESFNQKDFREKTGVNTTFVQDNHSMSLK-NVLRGLHYQIP-NP 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVD R++SPT+G WV +SA N ++P GFAHGF+ L E
Sbjct: 69 QGKLVRVVNGSVFDVAVDARQSSPTFGQWVGCILSAENKRIFWVPEGFAHGFLVLSDRAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+YK T++Y +++ + W D + I WPL P +S KDQ
Sbjct: 129 FLYKTTNYYYPQYEKTILWNDADLGIDWPL--ETPPILSPKDQ 169
>gi|194334561|ref|YP_002016421.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prosthecochloris aestuarii
DSM 271]
gi|194312379|gb|ACF46774.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prosthecochloris aestuarii
DSM 271]
Length = 195
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 107/174 (61%), Gaps = 6/174 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I + + F D RG+F +++ + ++ Q FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IPDVLIFEPKVFGDERGYFFESFRQDIFEQHVGQVNFVQDNQSKS-KYGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q+KLVR + G + D+AVDIR+ SP +G +V++++ + +++P GFAHGF+ L +
Sbjct: 67 FTQSKLVRVLDGCVIDVAVDIRKGSPWFGQYVTVKLDSVKNNMLWVPQGFAHGFVVLSED 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQ 174
YK ++Y+ ++D+G+ W D + I W P+ D VS+KD P L++
Sbjct: 127 AVFAYKCDNYYAPDYDAGIRWNDPELSIDWAIPVADI---QVSQKDATQPLLDE 177
>gi|328948422|ref|YP_004365759.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Treponema succinifaciens DSM
2489]
gi|328448746|gb|AEB14462.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Treponema succinifaciens DSM
2489]
Length = 199
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 98/162 (60%), Gaps = 5/162 (3%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ-RPPYAQAK 67
++ + F DSRG+F +TYS K E GL+ FVQDN S S G +RGLHFQ R P Q K
Sbjct: 21 IQPKVFGDSRGYFLETYSEKDFFEAGLKMKFVQDNQSSS-SKGVLRGLHFQTRHP--QGK 77
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR + G++FD+AVD+R+ S T+G + + + + Q YIP GFAHGF + + Y
Sbjct: 78 LVRSLQGKVFDVAVDLRKGSATFGKYYGVVLDSEKQNQFYIPEGFAHGFYVISDSAVFAY 137
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDT-ILPSVSEKDQN 168
K TDFY E + G+ W D SI + W + P +SEKD+
Sbjct: 138 KCTDFYHPEDEDGLMWNDSSIGVDWKSVGAGETPLLSEKDKK 179
>gi|257061453|ref|YP_003139341.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 8802]
gi|256591619|gb|ACV02506.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 8802]
Length = 181
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 104/164 (63%), Gaps = 7/164 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSK-LLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ-RPPY 63
V I++ F D RG+F +++++K +E G+ FVQDNHS S +RGLH+Q + P
Sbjct: 11 VMIIEPNVFGDDRGFFYESFNAKKFAEETGINPNFVQDNHSKS-GKNVLRGLHYQIQQP- 68
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
Q KLVR + G + DIAVDIR++SP++G WV ++ N Q ++P GFAHGF+ L
Sbjct: 69 -QGKLVRVVVGEVLDIAVDIRKSSPSFGQWVGCILNTENKRQFWVPEGFAHGFVVLSDVA 127
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E +YK TD+Y+ +++ + W D I+I W + D P +S+KDQ
Sbjct: 128 EFLYKTTDYYAPQYERSILWNDPDINIDWQITDE--PILSKKDQ 169
>gi|148360590|ref|YP_001251797.1| dTDP-6-deoxy-D-glucose-3,5-epimerase RmlC [Legionella pneumophila
str. Corby]
gi|296106344|ref|YP_003618044.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Legionella pneumophila
2300/99 Alcoy]
gi|148282363|gb|ABQ56451.1| dTDP-6-deoxy-D-glucose-3,5-epimerase RmlC [Legionella pneumophila
str. Corby]
gi|295648245|gb|ADG24092.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Legionella pneumophila
2300/99 Alcoy]
Length = 187
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 106/177 (59%), Gaps = 5/177 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ ++I++ + + D RG+F +++ +K +EL G+ D FVQDN S S G +RGLH+Q
Sbjct: 7 QIDELKIIEPKIYGDERGFFYESFQAKRYEELLGITDRFVQDNFSRS-QKGVLRGLHYQS 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLV +AG +FD+AVDIR SPT+G WV + +S N Q +IP GFAHGF L
Sbjct: 66 QQ-TQGKLVSVLAGEVFDVAVDIRLGSPTFGQWVGVILSGENKRQFWIPKGFAHGFYVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ YK TD+Y E + + + D + I WPL + + +S KD L+ ID+
Sbjct: 125 AMADFAYKCTDYYYPESEFSIHYLDPQLAIDWPLGEQV--QLSPKDAAAKPLSLIDA 179
>gi|609644|gb|AAA88702.1| CDP-3,6-dideoxy-D-glycero-D-glycero-4-hexulose-5-epimerase
[Yersinia pseudotuberculosis]
Length = 187
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 107/179 (59%), Gaps = 6/179 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I +++ KF DSRG F +T+ S E G+ ++ +S S IRG+HFQ
Sbjct: 15 LDIEGCYLIEFNKFIDSRGTFVKTFHSDFFSENGIVLDMREEFYSISAK-NVIRGMHFQM 73
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP KLV C+ G + D+ +DIR++S TYG + S+E+S N L +++P G AHGF++L
Sbjct: 74 PPAEHDKLVYCVNGAVLDVILDIRKDSKTYGEYFSIELSYENSLALWVPKGLAHGFLSLA 133
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
N+ + YK + ++VE DSG+ W S WP+ + P +SEKD +L + ++ DS F
Sbjct: 134 DNSIMFYKTSSVHNVECDSGIKWN--SFGFKWPIDN---PIISEKDNSLCYFDEFDSSF 187
>gi|295693596|ref|YP_003602206.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Lactobacillus crispatus ST1]
gi|295031702|emb|CBL51181.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus crispatus ST1]
Length = 202
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 98/173 (56%), Gaps = 6/173 (3%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F +T++ + + + G FVQDN S S G +RGLHFQ+ Y Q KLVR + G
Sbjct: 26 DDRGYFMETFNQRDMMDAGFSINFVQDNQSSS-TKGVLRGLHFQKH-YPQIKLVRAVRGS 83
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R S TYG W +E++A N Q IP GFAHGF+ L E YKV DF+
Sbjct: 84 VFDVAVDLRSESKTYGKWYGVELTAENKKQFLIPQGFAHGFLVLSDVAEFCYKVNDFWHP 143
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKD----QNLPFLNQIDSPFEYDGL 184
+ G+AW D I I WP + P ++ + LN ++ E+ GL
Sbjct: 144 NDEGGMAWNDPEIGIKWPHVKGDYPGSADASGYTLDDGTKLNLVERDQEWKGL 196
>gi|14601228|ref|NP_147761.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aeropyrum pernix K1]
gi|5104850|dbj|BAA80164.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aeropyrum pernix K1]
Length = 187
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 107/181 (59%), Gaps = 4/181 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I + ++K +F D RG+F++ Y G+ F+Q N S+S+ G +RGLH+Q
Sbjct: 9 LEIPDIVLIKYERFSDPRGFFAELYKRTPFLAEGIPYDFIQVNLSYSYK-GVVRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ Q KLV + GR+ D+AVDIR+ SP YG VS E+ G+ ++IP GFAHGF LE
Sbjct: 68 KPHEQGKLVYVLYGRVLDVAVDIRKGSPWYGKHVSAELKP--GMALWIPPGFAHGFQALE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ +Y VT Y + + + W D +++I WP++D VS KD+N P L + ++ F
Sbjct: 126 -DALFLYLVTKEYFKDSERCIKWNDPNLEIKWPIIDDDKVIVSGKDRNCPPLKEAETNFS 184
Query: 181 Y 181
Y
Sbjct: 185 Y 185
>gi|149369374|ref|ZP_01889226.1| dTDP-4-dehydrorhamnose 3,5-epimerase [unidentified eubacterium
SCB49]
gi|149356801|gb|EDM45356.1| dTDP-4-dehydrorhamnose 3,5-epimerase [unidentified eubacterium
SCB49]
Length = 182
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 101/164 (61%), Gaps = 3/164 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+L+ FED RG F +T++ K E+ GL+ FVQDN S S G +RGLH+Q+ +AQ+
Sbjct: 13 VLQPNVFEDERGIFIETFNEKTFNEITGLKTAFVQDNQSRS-TRGVLRGLHYQKGDFAQS 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR GR+ DI VD+R++SPT+G S+ + Q+++P GFAHGF+TL +
Sbjct: 72 KLVRVAKGRVLDIVVDLRKDSPTFGQHFSIILDDLTHQQLFVPRGFAHGFITLSETSVFA 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
YK + Y E + G+ + D ++ + W L L VSEKD+ LP
Sbjct: 132 YKCDNLYHKEAEGGIIYNDATLQLDWHLPQEEL-IVSEKDKALP 174
>gi|325143318|gb|EGC65653.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
961-5945]
Length = 155
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 95/150 (63%), Gaps = 2/150 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKS-GKGVLRGLHYQTEN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 67 -TQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW 152
E +YK TD+Y+ E + + W D ++ I W
Sbjct: 126 AEFVYKCTDYYNPEAEHSLIWNDPTVGIDW 155
>gi|163792827|ref|ZP_02186804.1| CDP-4-dehydro-6-deoxy-D-glucose 3-epimerase [alpha proteobacterium
BAL199]
gi|159182532|gb|EDP67041.1| CDP-4-dehydro-6-deoxy-D-glucose 3-epimerase [alpha proteobacterium
BAL199]
Length = 180
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 98/172 (56%), Gaps = 3/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ R+ D+RG+F +++ ++ L G Q N S + GT+RGLHFQ P
Sbjct: 11 GIAGLHVVVPRRLADTRGFFERSFCAQELTAAGWNTPVAQINQSVTEAAGTVRGLHFQHP 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+A+ KLVRC G +FD+AVD+R +SPTY W + +S +G + IP G AHGF TL
Sbjct: 71 PHAEMKLVRCTQGSVFDVAVDLRPDSPTYRRWHAETLSDADGRGLLIPPGLAHGFQTLTT 130
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
++Y + + E G+ D ++DI WP +L S++D LPFL
Sbjct: 131 RCRMLYVHSVAFHPESQGGIHPLDPTLDIAWPEPIELL---SDRDAALPFLE 179
>gi|302039315|ref|YP_003799637.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Nitrospira
defluvii]
gi|300607379|emb|CBK43712.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Nitrospira
defluvii]
Length = 185
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 94/156 (60%), Gaps = 9/156 (5%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ--RPPYAQAKLVRC 71
F D+RG F + + G+ FVQDN S+S GT+RGLH+Q RP Q KLV
Sbjct: 19 FGDARGKFVEIFRESRYDAAGIDKPFVQDNFSWSVR-GTLRGLHYQLARP---QGKLVMV 74
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
+ G +FD+AVDIR+ SPT+G W +E+S +N Q+YIP GFAHGF L + +YK TD
Sbjct: 75 VKGTVFDVAVDIRQGSPTFGQWYGVELSDSNMRQLYIPPGFAHGFCVLSEDAGFLYKCTD 134
Query: 132 FYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
YS + G+ W D ++ I WP+ P +S KDQ
Sbjct: 135 VYSPPDERGILWNDPALAIAWPVK---TPLLSAKDQ 167
>gi|313203692|ref|YP_004042349.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Paludibacter propionicigenes
WB4]
gi|312443008|gb|ADQ79364.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paludibacter propionicigenes
WB4]
Length = 182
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 102/178 (57%), Gaps = 4/178 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I+K R F D+RG+F ++Y+ K + F QDN S S G IRGLH+Q P
Sbjct: 8 IKDLVIIKPRVFADARGFFFESYNEAAYKAANINIHFCQDNQSKS-SYGVIRGLHYQLLP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+Q KLV + G ++D+AVD+R++SPT+G W +E++ N LQ IP GFAHGF L
Sbjct: 67 QSQTKLVSVVQGAVWDVAVDLRKDSPTFGQWYGVELTEENHLQFIIPQGFAHGFSVLSET 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPF 179
YK DFYS + + G+ + D ++ I W + D + +S+KD P L + F
Sbjct: 127 AVFTYKCDDFYSPQLERGIMYNDPALAIDWKIPADKAI--ISDKDTKHPLLKDAELNF 182
>gi|125975044|ref|YP_001038954.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum ATCC
27405]
gi|125715269|gb|ABN53761.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum ATCC
27405]
Length = 182
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 102/173 (58%), Gaps = 6/173 (3%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKL 68
L R F D+RG F +T+ ++ + GL+ F ++ +S S G +RGLHFQ+PP K+
Sbjct: 16 LIPRIFSDNRGRFVKTFHEEVFAQAGLETNFAEEYYSVSHK-GVLRGLHFQKPPREHTKV 74
Query: 69 VRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128
V C+ G + D+ VD+R SPTYG + +++++ IYIP G AHGF +IYK
Sbjct: 75 VYCVHGEVMDVVVDLRVGSPTYGKYDIFDLNSDKANMIYIPKGLAHGFYVKSNQAILIYK 134
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
VT YS E+D+G+ W S+ I WP + P +SE+D+ LP ++ + F Y
Sbjct: 135 VTTVYSPENDTGIRWD--SVGIPWPNDN---PIMSERDRMLPVFEEMQNIFTY 182
>gi|291520149|emb|CBK75370.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Butyrivibrio fibrisolvens
16/4]
Length = 192
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 103/172 (59%), Gaps = 8/172 (4%)
Query: 2 NINPVR---ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHF 58
NIN + ++ + F D RG+F +TY+ +K GL FVQDN S S G +RGLHF
Sbjct: 8 NINGIEGLCVITPKVFGDDRGYFMETYNENDMKAEGLDYEFVQDNQSAS-KKGVLRGLHF 66
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
Q+ + Q KLVR I+G ++D+AVD+R S T+G + +SA N Q IP GFAHGF+
Sbjct: 67 QKN-FPQDKLVRVISGEVYDVAVDLREGSKTFGQHYGILLSAENKKQFMIPKGFAHGFLV 125
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS---VSEKDQ 167
+ E YKVTDFY + G+A+ D I++ WP+ + + +S+KD+
Sbjct: 126 VSDYAEFCYKVTDFYHPNDEGGLAFDDPDINVQWPIPEGMTKEDLILSDKDK 177
>gi|218247213|ref|YP_002372584.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 8801]
gi|218167691|gb|ACK66428.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 8801]
Length = 181
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 102/163 (62%), Gaps = 5/163 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSK-LLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I++ F D RG+F +++++K +E G+ FVQDNHS S +RGLH+Q
Sbjct: 11 VMIIEPNVFGDDRGFFYESFNAKKFAEETGVNPNFVQDNHSKS-GKNVLRGLHYQIQ-QT 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G + DIAVDIR++SP++G WV ++ N Q ++P GFAHGF+ L E
Sbjct: 69 QGKLVRVVVGEVLDIAVDIRKSSPSFGQWVGCILNTENKRQFWVPEGFAHGFVVLSDVAE 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+YK TD+Y+ +++ + W D I+I W + D P +S+KDQ
Sbjct: 129 FLYKTTDYYAPQYERSILWNDPDINIDWQITDQ--PILSKKDQ 169
>gi|187920919|ref|YP_001889951.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia phytofirmans
PsJN]
gi|187719357|gb|ACD20580.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia phytofirmans
PsJN]
Length = 182
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 105/175 (60%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++++ + F DSRG F +T++ +E + FVQDNHS S G +RGLH+Q
Sbjct: 10 IPDVKVIEPQVFGDSRGAFLETFNQVEFEEKVARGYTFVQDNHSISAQ-GVLRGLHYQ-I 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+RR S T+G WV + +SA+N Q++IP GFAHGF+ L
Sbjct: 68 QHPQGKLVRVVVGEVFDVAVDLRRWSSTFGRWVGVRLSASNRRQLWIPPGFAHGFVVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK T F+ EH+ + W D I + W L +P VS KD N+ +
Sbjct: 128 VAEFLYKATAFWHPEHERTLRWDDPDIAVEWEL--NGVPFVSSKDAAGSRFNEAE 180
>gi|304382458|ref|ZP_07364956.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella marshii DSM 16973]
gi|304336411|gb|EFM02649.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella marshii DSM 16973]
Length = 182
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 103/165 (62%), Gaps = 2/165 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V I++ + F D RG+F + + + ++ + F+QDN S S G +RGLH+Q+
Sbjct: 7 KIDGVFIIEPKVFYDERGYFFEAFKQEEFEQNVGKVTFIQDNESKS-SYGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR I GR+ D+AVDIR++SPT+G +V +E++ N Q +IP GFAHGF+ L
Sbjct: 66 EYSQAKLVRVIKGRVIDVAVDIRKSSPTFGQYVMVELNDENKRQFFIPKGFAHGFLVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YKV Y+ + ++ + + D I I WP+ + + VS+KD
Sbjct: 126 EAVFTYKVDAAYAPQAEASIRFNDSDIAIPWPISEKEI-MVSQKD 169
>gi|320102995|ref|YP_004178586.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Isosphaera pallida ATCC
43644]
gi|319750277|gb|ADV62037.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Isosphaera pallida ATCC
43644]
Length = 199
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 111/196 (56%), Gaps = 13/196 (6%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
MN+ P + + R F D RG F + ++ + + GL FVQDN S+S G +RG
Sbjct: 1 MNVEPTALPEVLRITPRVFYDDRGRFQELWNHERYAQAGLPVCFVQDNLSWS-RPGVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LHFQ P AQ KLV ++G IFD+AVD+R SPTYG WV +S+ N LQ++IP GFAHG
Sbjct: 60 LHFQNP-AAQGKLVMVLSGAIFDVAVDVRIGSPTYGQWVGEHLSSENSLQLFIPQGFAHG 118
Query: 116 FMTL-EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
F L + V YK T Y + + + W D + I WP + + P ++ KD+ L Q
Sbjct: 119 FAVLGDQPALVAYKCTHPYRPDCERALVWNDADLAIAWP-DEVVEPILNPKDRAASTLRQ 177
Query: 175 ID-SPF---EYDGLPL 186
++ SP +YD P+
Sbjct: 178 LERSPGALPQYDASPV 193
>gi|291519959|emb|CBK75180.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Butyrivibrio fibrisolvens
16/4]
Length = 196
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 103/172 (59%), Gaps = 8/172 (4%)
Query: 2 NINPVR---ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHF 58
NIN + ++ + F D RG+F +TY+ +K GL FVQDN S S G +RGLHF
Sbjct: 8 NINGIEGLCVITPKVFGDDRGYFMETYNENDMKAEGLDYEFVQDNQSAS-KKGVLRGLHF 66
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
Q+ + Q KLVR I+G ++D+AVD+R S T+G + +SA N Q IP GFAHGF+
Sbjct: 67 QKN-FPQDKLVRVISGEVYDVAVDLREGSKTFGQHYGILLSAENKKQFMIPKGFAHGFLV 125
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS---VSEKDQ 167
+ E YKVTDFY + G+A+ D I++ WP+ + + +S+KD+
Sbjct: 126 VSDYAEFCYKVTDFYHPNDEGGLAFDDPDINVQWPIPEGMTKEDLILSDKDK 177
>gi|153868867|ref|ZP_01998601.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Beggiatoa sp. PS]
gi|152074563|gb|EDN71405.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Beggiatoa sp. PS]
Length = 176
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 93/151 (61%), Gaps = 3/151 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F++T+ + + GL VQ N SF+ + GT+RG+H+Q PY +AKLVRC G
Sbjct: 21 DERGFFARTWCQQEFEAHGLNPNLVQCNISFNKNKGTLRGMHYQVAPYEEAKLVRCTKGA 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
I+D+ +D+ S T+ W+++E++ANN +YIP FAHGF TL NTEV Y+++ FY
Sbjct: 81 IYDVIIDLHPESSTFKQWLAVELTANNQKMLYIPERFAHGFQTLADNTEVFYQMSTFYHP 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E G+ W D + I W I +S KD
Sbjct: 141 ECARGLRWNDPAFKIKWATDKQI---ISAKD 168
>gi|168702105|ref|ZP_02734382.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gemmata obscuriglobus UQM
2246]
Length = 177
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 2/167 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +++ D RG F++TY ++ GL + Q N SF+ GT+RG+H+Q P+ +
Sbjct: 11 VFVIEPEPTGDDRGLFARTYCAEEFARRGLCTQWAQCNVSFNTRAGTLRGMHWQAAPHEE 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVRC AG D+ D R +SPTY WV++E++A N +YIP G+AHGF T TE+
Sbjct: 71 VKLVRCTAGAALDVVADARPDSPTYRKWVAVELTAANRRAVYIPGGYAHGFQTFADGTEL 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
Y+++ FY G W D ++ I WP D + ++ +D + P L
Sbjct: 131 FYQMSAFYVPGAARGARWDDPALGIAWPPCDRRV--IAPRDLSFPDL 175
>gi|114332204|ref|YP_748426.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosomonas eutropha C91]
gi|114309218|gb|ABI60461.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosomonas eutropha C91]
Length = 181
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 105/168 (62%), Gaps = 7/168 (4%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + +++ + + D RG+F ++++ +E+ G FVQDNHS S +RGLH+Q
Sbjct: 6 LAIPDIYLIEPKVYGDERGFFFESFNQASFEEIIGRPVQFVQDNHSRSMK-NVLRGLHYQ 64
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
+ P Q KLVR + G +FD+A+D+R++S T+G W +SA N Q++IP GFAHGF+
Sbjct: 65 IQQP--QGKLVRVVQGEVFDVAIDLRKSSATFGQWTGEILSAENKYQLWIPEGFAHGFVV 122
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
L E +YK TD+Y+ H+ + W D ++DI WP I P++S KD
Sbjct: 123 LSNTAEFLYKTTDYYAPVHERCILWNDPTLDIAWPA--GIQPALSTKD 168
>gi|325981019|ref|YP_004293421.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosomonas sp. AL212]
gi|325530538|gb|ADZ25259.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosomonas sp. AL212]
Length = 181
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 105/167 (62%), Gaps = 5/167 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ + F D RG+F ++++ + + +G FVQ NHS S +RGLH+Q
Sbjct: 6 LAIPDVLLIEPKVFGDERGFFYESFNQRSFESVIGRSVQFVQSNHSRSAR-NVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
AQ KL R +AG +FDIAVDIRR+SPT+G WV ++A N Q++IP GFAHGF+ L
Sbjct: 65 IK-QAQGKLARVVAGEVFDIAVDIRRSSPTFGKWVGGILNAENKNQLWIPPGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +Y TD+++ EH+ + W D + I WP++ + P +S+KD
Sbjct: 124 SDYAEFLYNTTDYWAPEHERCIVWNDPMLAIDWPIIGS--PVLSDKD 168
>gi|261366442|ref|ZP_05979325.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Subdoligranulum variabile DSM
15176]
gi|282571706|gb|EFB77241.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Subdoligranulum variabile DSM
15176]
Length = 188
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 99/179 (55%), Gaps = 2/179 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++++ F D RG+F +TY G+ FVQDN S S G +RGLHFQ+
Sbjct: 10 EIPEVQVIEPTVFGDDRGYFMETYQIDDFAAAGIDKPFVQDNQSRSTK-GVLRGLHFQKN 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G +FD+AVD R +S T+G WV + +SA N +YIP GFAHGF+ L
Sbjct: 69 -HTQGKLVRVTLGEVFDVAVDCRPHSATFGKWVGVTLSAENKKMLYIPEGFAHGFVVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
E YK TD Y + G+ + D ++++ WP + ++ ++ PF Q FE
Sbjct: 128 VAEFCYKCTDVYDPTSEGGIPYDDPTVNVQWPDCGCEHKTSAKDKEHTPFAEQKFEFFE 186
>gi|84622379|ref|YP_449751.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|188578646|ref|YP_001915575.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|84366319|dbj|BAE67477.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|188523098|gb|ACD61043.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 185
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 98/170 (57%), Gaps = 5/170 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ F D RG+F +T++++ + GL F+Q N S S G +RGLH+Q P Q K
Sbjct: 13 VIEPAVFGDERGYFFETWNAERFGQHGLPTQFLQSNVSTSAK-GVLRGLHYQWP-RPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G ++D+AVD+R SP +G W ++ +SA N Q +IP GFAHGF L Y
Sbjct: 71 LVSVLEGEVYDVAVDVRHGSPNFGQWAAVVLSAENKKQFWIPEGFAHGFAVLSERAVFSY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
TD Y E D+GV W D +I I WP+ + +L S KD PFL + +
Sbjct: 131 LCTDVYVKEADAGVRWDDAAIGIDWPISNPLL---SAKDAAAPFLADVPA 177
>gi|190150743|ref|YP_001969268.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|307250739|ref|ZP_07532673.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|307264145|ref|ZP_07545739.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|189915874|gb|ACE62126.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|306857243|gb|EFM89365.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306870519|gb|EFN02269.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 180
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 100/165 (60%), Gaps = 4/165 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++L+ + F D RG+F +T+ + ++ FVQ+NHS S G +RGLH+Q
Sbjct: 7 KIPDVKLLEPQVFGDERGFFMETFRDEWFRQNVADRTFVQENHSKSIK-GVLRGLHYQ-T 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 65 ENTQGKLVRVVQGAVFDVAVDLRKSSPTFGQWVGEVLSAENKRQLWVPEGFAHGFYVLTE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E YK TD+Y+ + + + W D ++ I W L PS+S KD
Sbjct: 125 TAEFTYKCTDYYNPKAEHSLIWNDPTVAIDWNLDGE--PSLSVKD 167
>gi|313904869|ref|ZP_07838241.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium cellulosolvens 6]
gi|313470302|gb|EFR65632.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium cellulosolvens 6]
Length = 193
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 98/168 (58%), Gaps = 5/168 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + +++ F D+RG+F +TY+ G+ FVQDN S S G +RGLHFQ
Sbjct: 13 IEGLYVIEPSVFGDNRGYFMETYNYNDFAAAGIDCKFVQDNQSAS-KKGVLRGLHFQ-IN 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR I G +FD+AVD+R S T+G W +E++A N Q +IP FAHGF+ L
Sbjct: 71 HPQDKLVRVIVGSVFDVAVDLRPGSKTFGKWFGVELTAENKKQFFIPKNFAHGFLVLSDY 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS---VSEKDQ 167
E YKVTDFY + G+ W D + + WP+ + + +S+KD+
Sbjct: 131 AEFCYKVTDFYHPNDEGGIMWNDPQVGVEWPMPEGMTAGDLILSDKDK 178
>gi|304409908|ref|ZP_07391527.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS183]
gi|307302385|ref|ZP_07582143.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica BA175]
gi|304351317|gb|EFM15716.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS183]
gi|306914423|gb|EFN44844.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica BA175]
Length = 179
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 98/170 (57%), Gaps = 9/170 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL----GLQD-VFVQDNHSFSFDCGTIRGL 56
+ V + + + F D RG+F +T+ GL+ VFVQ+NHS S +RGL
Sbjct: 7 ELAEVLVFEPQVFGDERGFFMETFRQSYFDACFALRGLESCVFVQENHSRS-QRNVLRGL 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
HFQR Q KLVR AG IFD+AVDIR +S TYG WV +SA N LQ++IP GFAHGF
Sbjct: 66 HFQRRK-PQGKLVRVCAGSIFDVAVDIRPDSATYGKWVGRVLSAENHLQMWIPPGFAHGF 124
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
L EVIY+ T +Y E +S VAW I WPL+ P +S +D
Sbjct: 125 YVLSDYAEVIYQCTQYYEPEDESVVAWNSAEFAIDWPLITA--PILSTRD 172
>gi|296137704|ref|YP_003644948.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salinibacter ruber M8]
gi|295981873|emb|CBH22831.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salinibacter ruber M8]
Length = 193
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 97/170 (57%), Gaps = 5/170 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
VR+++ + D RG F++ ++ + GL FVQDN S S + G +RGLHFQ P Q
Sbjct: 18 VRLIEPDVYMDDRGSFAELWNVRDYGHHGLDVTFVQDNLSRSRE-GVLRGLHFQNP-RPQ 75
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KL+ + G ++D+ VD+R + T+G W +SA N Q+Y+P G+AHGF+
Sbjct: 76 GKLISVLKGAVYDVVVDVRAGADTFGAWEGQVLSAENARQLYVPEGYAHGFVATSGEVLF 135
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK TDFY E D V W D ++ I WP D IL SEKD P L++I
Sbjct: 136 HYKCTDFYHPEADRTVRWDDPALGIDWPTEDPIL---SEKDAGAPALDEI 182
>gi|255009344|ref|ZP_05281470.1| putative LPS biosynthesis related dTDP-4-dehydrorhamnose
3,5-epimerase [Bacteroides fragilis 3_1_12]
gi|313147099|ref|ZP_07809292.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides fragilis 3_1_12]
gi|313135866|gb|EFR53226.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides fragilis 3_1_12]
Length = 182
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V I++ + F D RG+F + + + Q F+QDN S S GT+RGLH+Q+
Sbjct: 8 IDGVWIIEPKVFSDPRGYFMEAFKQQEFDATIGQINFIQDNESKS-SFGTLRGLHYQKGD 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y QAKLVR I G + D+AVD+R++SPT+G +S+ +S +N Q++IP GFAHGF+
Sbjct: 67 YCQAKLVRVIKGEVLDVAVDLRKSSPTFGKHISVLLSDDNKRQLFIPRGFAHGFLVKSEE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YKV + Y+ + ++ + + D ++ I WP+ D+ L +SEKD+
Sbjct: 127 AVFTYKVDNIYAPQAEASIIYNDPALGIDWPIADSQL-VMSEKDRQ 171
>gi|332971548|gb|EGK10498.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Kingella kingae ATCC 23330]
Length = 187
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 100/172 (58%), Gaps = 9/172 (5%)
Query: 1 MNINPVRILKTRKFE-----DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
MNI P IL + E D RG+F +T+ ++ FVQ+NHS S +RG
Sbjct: 8 MNILPTSILDIKLLEPQIWRDERGFFMETFRDDWFRQHVADCAFVQENHSQS-SKNVLRG 66
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q AQ KLVR +AG IFD+AVD+RR+SPT+G WV+ +S +N Q++IP GFAHG
Sbjct: 67 LHYQ-TENAQGKLVRAVAGCIFDVAVDLRRSSPTFGQWVAEILSGDNARQMWIPGGFAHG 125
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
F L V YK TD+Y+ + + W D ++ I W L P +S KDQ
Sbjct: 126 FYVLSDGAAVAYKCTDYYNPSAEHTLLWNDPAVSIDWRLNGK--PVLSPKDQ 175
>gi|71044437|gb|AAZ20757.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli]
gi|324019199|gb|EGB88418.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 117-3]
Length = 183
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 99/173 (57%), Gaps = 5/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ + + D RG+F + Y+ ELG+ FVQDN S S +RGLHFQ+
Sbjct: 8 IEDLVIIEPKIYNDERGYFYEFYNKNKFTELGINLDFVQDNRSSS-SQNVLRGLHFQKTK 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV G +FD+AVD+R++S T+G + S+ ++ N YIP GFAHGF L
Sbjct: 67 -PQGKLVTVTKGEVFDVAVDLRKDSRTFGQYESVILTEENKKIFYIPPGFAHGFCVLSNK 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ +YK TDFY + G+ W D S+ I WP+ IL S+KD LP L I
Sbjct: 126 ADFLYKCTDFYDPNDEGGIIWNDSSLSIEWPVNAPIL---SKKDMELPTLKNI 175
>gi|332529613|ref|ZP_08405569.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Hylemonella gracilis ATCC
19624]
gi|332040963|gb|EGI77333.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Hylemonella gracilis ATCC
19624]
Length = 182
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 106/177 (59%), Gaps = 8/177 (4%)
Query: 1 MNINP-----VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIR 54
M NP V IL+ + F DSRG+F ++++ K+ E+ G FVQD HS S G +R
Sbjct: 1 MKANPTALPGVLILEPQVFGDSRGFFFESFNQKVFVEITGANFNFVQDGHSKS-GKGVLR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
GLH+Q Q K+VR G +FD+AVDIR++S +G WV +E+S N Q++IP GFAH
Sbjct: 60 GLHYQ-IQQTQGKIVRVTRGSVFDVAVDIRKSSANFGKWVGVELSEENRRQLWIPPGFAH 118
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPF 171
GF + +V+YK+T+ Y+ +H+ + W D +I I WP+ + ++ Q +P
Sbjct: 119 GFAVTSESADVLYKMTENYAPQHERCILWNDPAIGIRWPVQGLEVQLSAKDQQGVPL 175
>gi|182415800|ref|YP_001820866.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Opitutus terrae PB90-1]
gi|177843014|gb|ACB77266.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Opitutus terrae PB90-1]
Length = 181
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 99/170 (58%), Gaps = 5/170 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ + F D RG+F +++S + G+ FVQDN SFS GT+RG+H Q P + Q K
Sbjct: 13 IIEPKVFGDQRGFFLESWSRPRYRAAGIALDFVQDNFSFS-RRGTLRGMHAQNP-HPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV G ++D+ VD+RRNSPT+G W L +SA N Q ++P GFAHGF+ Y
Sbjct: 71 LVSVWQGEVWDVVVDLRRNSPTFGRWFGLTLSAENKRQFWVPPGFAHGFVVTSETALFHY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
KVTD Y+ + + + D ++ I WP+ D IL S +D P L + S
Sbjct: 131 KVTDAYAPQDEIAFRFDDPAVGIRWPVSDPIL---STRDTQAPLLRDVPS 177
>gi|170726036|ref|YP_001760062.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella woodyi ATCC 51908]
gi|169811383|gb|ACA85967.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella woodyi ATCC 51908]
Length = 182
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 98/166 (59%), Gaps = 2/166 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V+IL + F D RG F + + E FVQ+N S S T+RGLH+Q
Sbjct: 8 ISDVKILAPQVFTDERGSFHEIFRDDWFIEHVADVRFVQENQSSS-KQSTLRGLHYQTAQ 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KL+R I+G +FD+ VD+RR+SPT+G S +SANN Q+++P GFAHGF +
Sbjct: 67 -TQGKLIRVISGEVFDVVVDLRRSSPTFGHCFSTTLSANNKHQLWVPIGFAHGFYVTSES 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E++YK TD+Y+ + + + W D + I WP+ P +SEKD+
Sbjct: 126 AELVYKCTDYYAPQFECSILWNDPELAIDWPIASDCNPLLSEKDRK 171
>gi|117925732|ref|YP_866349.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Magnetococcus sp. MC-1]
gi|117609488|gb|ABK44943.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Magnetococcus sp. MC-1]
Length = 182
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 106/167 (63%), Gaps = 7/167 (4%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ-RPPYAQ 65
+L++ +F D RG+F+++Y+ K +L GL+ FVQDNHS S +RG+H+Q R P Q
Sbjct: 13 VLQSTRFTDDRGFFTESYNHKKFSQLTGLKTHFVQDNHSRS-KRHVLRGMHYQLRQP--Q 69
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKLV+ G ++D+ VD+R++SPT+ L +SA+NGL +++P GFAHGF+ L ++
Sbjct: 70 AKLVQVCQGEVYDVIVDMRQSSPTFKQHFGLRLSADNGLALWVPEGFAHGFLVLSEQADL 129
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD-QNLPF 171
YKV + Y + + W D I I WPL D P +S KD Q LPF
Sbjct: 130 HYKVNNDYDPTSERCLHWADAEIGIAWPLSDQP-PLLSPKDAQGLPF 175
>gi|123966644|ref|YP_001011725.1| dTDP-dehydrorhamnose 3,5-epimerase [Prochlorococcus marinus str.
MIT 9515]
gi|123201010|gb|ABM72618.1| dTDP-dehydrorhamnose 3,5-epimerase [Prochlorococcus marinus str.
MIT 9515]
Length = 185
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 99/168 (58%), Gaps = 3/168 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
IL+ + D+RG F+ Y K+ L + Q N S SFD T+RG+HFQ PPY+Q K
Sbjct: 13 ILENDVYRDNRGSFTCFYIEDDFKKNNLNTKWTQINSSLSFDERTLRGIHFQYPPYSQIK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR I G IFD+ VD+R S T+G ++ N +YI GF HGFMT+E NT++IY
Sbjct: 73 LVRVIQGSIFDVIVDLRPKSKTFGKHFFYFLNEKNNKMLYIANGFGHGFMTMENNTKIIY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
V+ Y E++ + W DK ++I WP ++ L +S KD N N+I
Sbjct: 133 NVSAPYKPEYEETIIWNDKLLNIQWP--NSPL-KLSAKDLNGKTFNEI 177
>gi|260911475|ref|ZP_05918064.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella sp. oral taxon 472
str. F0295]
gi|260634404|gb|EEX52505.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella sp. oral taxon 472
str. F0295]
Length = 213
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 103/162 (63%), Gaps = 4/162 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V +++ + F D RG+F + + + K +G D FVQDN S S G +RGLH+Q+
Sbjct: 38 ELQGVFVIEPKVFNDERGYFLEAWKKEEFEKHVGKVD-FVQDNESKS-SFGVLRGLHYQK 95
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+QAKLVR I G++ D+AVD+R++SPT+G +V++E+S N Q++IP GFAHGF+ L
Sbjct: 96 GDASQAKLVRVIKGKVLDVAVDLRKSSPTFGKYVAVELSEENKRQLFIPRGFAHGFLVLS 155
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPS 161
YKV + Y + ++ + W D+++ I WP+ D I+ S
Sbjct: 156 PEAVFTYKVDNVYCPQSETSIRWNDETLGIQWPIEYDKIITS 197
>gi|33862386|ref|NP_893946.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prochlorococcus marinus str.
MIT 9313]
gi|33640499|emb|CAE20288.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prochlorococcus marinus str.
MIT 9313]
Length = 205
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 102/170 (60%), Gaps = 13/170 (7%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQD----------VFVQDNHSFSFDCGTIRGLH 57
+L F D RG+F ++++ + ++ ++ VF QDNHS S G +RGLH
Sbjct: 19 LLTPSVFNDDRGFFFESWNERSFQQALIEGGWNEQAASAVVFRQDNHSRS-SLGVLRGLH 77
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
+Q P Q KLVRC G IFD++VD+RR S T+G V++E++A N Q+++P GFAHGF+
Sbjct: 78 YQLQPEPQGKLVRCTVGAIFDVSVDLRRGSSTFGQCVAVELTAENHKQLWVPVGFAHGFL 137
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEK 165
TL EV+YK + F++ + + + W D + I WPL L P ++EK
Sbjct: 138 TLSDQAEVLYKASGFWNRDCERSLRWDDPELAIAWPLERLGGAQPLLAEK 187
>gi|189500844|ref|YP_001960314.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium phaeobacteroides
BS1]
gi|189496285|gb|ACE04833.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium phaeobacteroides
BS1]
Length = 195
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 107/175 (61%), Gaps = 6/175 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V I + + F D RG+F +++ + + Q FVQDN S S G +RGLHFQ+P
Sbjct: 7 SIPDVLIFEPKVFGDERGYFFESFRQDVFELHVGQVNFVQDNQSKS-KYGVLRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ Q+KLVR + G + D+AVDIR+ SP +G +V++++ + +++P GFAHGF+ L
Sbjct: 66 PFTQSKLVRVLDGCVIDVAVDIRKGSPWFGQYVAVKLDSAKNNMLWVPQGFAHGFVVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQ 174
+ YK ++Y+ ++D+G+ W D + I W P+ D VS+KD P L++
Sbjct: 126 DAVFAYKCDNYYAPDYDAGIRWNDPELAIDWTIPVADI---QVSQKDATQPLLDE 177
>gi|119513241|ref|ZP_01632285.1| dTDP-4-dehydrorhamnose 3,5-epimerase-like protein [Nodularia
spumigena CCY9414]
gi|119462108|gb|EAW43101.1| dTDP-4-dehydrorhamnose 3,5-epimerase-like protein [Nodularia
spumigena CCY9414]
Length = 185
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 99/168 (58%), Gaps = 3/168 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I+ K D RG+F++ + ++ GL+ Q N SF+ GT+RG+H+Q P A+ K
Sbjct: 13 IVDVEKKPDHRGFFARGFCAQEFMAHGLKPTVAQCNISFNHKKGTVRGMHYQVSPAAETK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVRC G I+D+ +D+R SPT+ + +E++A N +Y+P FAHG+ TL + EV+Y
Sbjct: 73 LVRCTKGAIYDVIIDMRPESPTFLSHIGVELTAENHRALYVPEMFAHGYQTLTDDAEVVY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+V +FY+ ++ G+ + D I WPL T +SEKD N L I
Sbjct: 133 QVGEFYTPGYERGLRYNDPFFHIEWPLAVT---EISEKDLNWTLLEMI 177
>gi|110597108|ref|ZP_01385397.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium ferrooxidans DSM
13031]
gi|110341299|gb|EAT59764.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium ferrooxidans DSM
13031]
Length = 199
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V ++ F D RG+F +++ L++E + FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IPDVLFIEPEVFGDDRGYFFESFRQDLMEEHVGRVEFVQDNESKS-GYGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q+KLVR + GR+ D+AVD+R SP YG V + +++P GFAHGF+ L +
Sbjct: 67 FTQSKLVRVVRGRVLDVAVDVRLGSPWYGRHVYSLLDGERKNMMWVPKGFAHGFLVLSED 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YK ++Y+ HD+G+ W D ++ I W L ++++ VSE+D
Sbjct: 127 AVFSYKCDNYYAPSHDTGIMWNDPALGIDWQLPESVI-RVSERDSK 171
>gi|332293421|ref|YP_004432030.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Krokinobacter diaphorus
4H-3-7-5]
gi|332171507|gb|AEE20762.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Krokinobacter diaphorus
4H-3-7-5]
Length = 184
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 102/169 (60%), Gaps = 3/169 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
I + FED RG+F ++Y+S+ + G +FVQDN S S G +RGLHFQ +AQ+
Sbjct: 13 ICTPKVFEDDRGYFYESYNSEAFERFAGFSPLFVQDNQSKS-SFGVLRGLHFQIGKHAQS 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR I G++ D+ VD+R+ PTYG ++E+S N Q+++P G AHGF+TL
Sbjct: 72 KLVRVIEGKVLDVVVDLRKEEPTYGKSFAIELSGANKKQLFVPKGMAHGFITLSDTAIFA 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK FY + + G+A+ D S+ I W LL+ +S KD P L+++
Sbjct: 132 YKCDAFYDQKSERGLAYNDVSLKIDW-LLNEHEFLLSPKDLENPMLSEL 179
>gi|37521774|ref|NP_925151.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gloeobacter violaceus PCC
7421]
gi|35212772|dbj|BAC90146.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gloeobacter violaceus PCC
7421]
Length = 182
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 100/165 (60%), Gaps = 3/165 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ + ED RG+F++T+ ++ + GL F Q N S++ GT+RGLH+Q P + K
Sbjct: 13 IIELERREDERGFFARTFCAREFEAQGLAGTFAQSNLSYNHRAGTLRGLHYQVAPALETK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVRC G I+D+ VD+R S TY + +E+S +N +Y+P FAHG+ L EV+Y
Sbjct: 73 LVRCTRGAIYDVIVDLRPGSRTYLQHIGVELSEDNRWALYVPGLFAHGYQALTDGAEVLY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+V +FY+ ++ G+ + D ++ I WPL ++L S KD P L
Sbjct: 133 QVGEFYTPGYERGLRYDDPALAIDWPLPVSVL---STKDNGWPLL 174
>gi|300728512|ref|ZP_07061871.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella bryantii B14]
gi|299774230|gb|EFI70863.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella bryantii B14]
Length = 185
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 104/168 (61%), Gaps = 3/168 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NI +IL + F D+RG F + Y+ L + G++DVFVQDN S S G +RG+H Q
Sbjct: 6 VNIKDAKILIPQLFTDTRGDFMEFYNENTLNKEGIKDVFVQDNISSSIK-GVLRGVHTQL 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Y QAK+V C+ G I+D+ VD R +SPT+G W ++A+N Q+Y+P G AHG+ TL
Sbjct: 65 K-YPQAKIVSCLKGIIWDVIVDCRIDSPTFGNWYGEFLTADNHKQLYVPQGVAHGYYTLS 123
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
T ++ KVT Y+ + G W D+SI I WPL P ++EKD+N
Sbjct: 124 EAT-ILMKVTTHYTPGDEIGFNWDDESIGIDWPLDCESEPILAEKDKN 170
>gi|289662630|ref|ZP_06484211.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 185
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 99/170 (58%), Gaps = 5/170 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ ++D RG+F ++++++ + GL FVQ N S S G +RGLH+Q P Q K
Sbjct: 13 LIEPAVYDDGRGYFFESWNAERFAKHGLPANFVQSNVSSS-SKGVLRGLHYQWP-RPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G ++D+A+DIR SP +G WV+ +SA N Q +IP GFAHGF L Y
Sbjct: 71 LVSVLEGEVYDVAIDIRHGSPHFGQWVAALLSAENNRQFWIPEGFAHGFAVLSERAVFSY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
TD Y E D+GV W D +I I WP+ + +L S KD PFL + +
Sbjct: 131 LCTDVYVKEADAGVRWDDAAIGIDWPISNPLL---SAKDAAAPFLADVPA 177
>gi|50120380|ref|YP_049547.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Pectobacterium atrosepticum
SCRI1043]
gi|49610906|emb|CAG74351.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Pectobacterium atrosepticum
SCRI1043]
Length = 178
Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 101/166 (60%), Gaps = 6/166 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
++ +I++ + F D+RG+F +T+ + +E+ DV FVQDNHS S G +RGLHFQ+
Sbjct: 8 VHGAKIIQPKVFGDARGFFLETFEKRRYQEMLDIDVDFVQDNHSRS-SKGVLRGLHFQKT 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVDIR++SPTYG W +S N Q ++P G AHGF+ L
Sbjct: 67 -NPQGKLVRVVRGEVFDVAVDIRQDSPTYGKWYGALLSEENKTQFWLPPGLAHGFVVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+ YK TD+Y + + W D + I WP+ P +SEKD+
Sbjct: 126 IADFEYKCTDYYDPSDEGCLLWNDPDLGIEWPI---STPQLSEKDK 168
>gi|326402816|ref|YP_004282897.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium multivorum
AIU301]
gi|325049677|dbj|BAJ80015.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium multivorum
AIU301]
Length = 183
Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 99/170 (58%), Gaps = 8/170 (4%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG F + + S+ L L Q N S + GT+RGLHFQ PP+A+ KL+RC+ GR
Sbjct: 21 DARGAFQRCFCSRDLAPLLGTREIAQINRSLTARSGTVRGLHFQFPPHAEMKLIRCLRGR 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
++D+AVD+R SP W + E+SA NG + IP G AHGF LE ++E++Y T Y+
Sbjct: 81 VWDVAVDLRAGSPQLLRWHAEELSAANGRMLVIPEGVAHGFQALENDSELLYIHTAHYAH 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLP 185
+ GV D + I WP++ + +S++D+ LP L P + G P
Sbjct: 141 AAEGGVRCDDPQLGIDWPMM---VGGLSDRDRALPML-----PALFTGFP 182
>gi|104779535|ref|YP_606033.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Pseudomonas
entomophila L48]
gi|95108522|emb|CAK13216.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Pseudomonas
entomophila L48]
Length = 181
Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 106/177 (59%), Gaps = 9/177 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ-- 59
I V I++ + F D RG+F ++++++ E G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPEVLIIEPKVFGDDRGFFFESFNAREFAEKAGFEAGFVQDNHSRS-QRGVLRGLHYQID 66
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P Q KLVR + G + D+AVDIRR+S T+G WV+ + A + Q +IP GFAHGF+ L
Sbjct: 67 NP---QGKLVRVVQGEVLDVAVDIRRSSKTFGKWVATRLCAKDHTQFWIPPGFAHGFLVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD+Y+ + + + W D + I W L P +S KDQ FL++ +
Sbjct: 124 SETADFLYKTTDYYNPKAERCIRWDDPELGIEWGL--EAPPILSAKDQAGAFLHEAE 178
>gi|148259609|ref|YP_001233736.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium cryptum JF-5]
gi|146401290|gb|ABQ29817.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium cryptum JF-5]
Length = 183
Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 99/170 (58%), Gaps = 8/170 (4%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG F + + S+ L L Q N S + GT+RGLHFQ PP+A+ KL+RC+ GR
Sbjct: 21 DARGAFQRCFCSRDLAPLLGTREIAQINRSLTARSGTVRGLHFQFPPHAEMKLIRCLRGR 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
++D+AVD+R SP W + E+SA NG + IP G AHGF LE ++E++Y T Y+
Sbjct: 81 VWDVAVDLRAGSPQLLRWHAEELSAANGRMLVIPEGVAHGFQALENDSELLYIHTAHYAH 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLP 185
+ GV D + I WP++ + +S++D+ LP L P + G P
Sbjct: 141 AAEGGVRCDDPQLGIDWPMM---VGGLSDRDRALPML-----PALFTGFP 182
>gi|260590770|ref|ZP_05856228.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella veroralis F0319]
gi|260537256|gb|EEX19873.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella veroralis F0319]
Length = 184
Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 104/168 (61%), Gaps = 7/168 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V +++ + F D RG+F + + E +G F+QDN S S G +RGLH+Q+
Sbjct: 7 EIEGVWVIEPKVFNDQRGYFFEAFKQAEFDEHIGHHVEFIQDNESKS-SFGVLRGLHYQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
++QAKLVR I G++ D+AVD+R++SPT+G +V++E+S +N Q +IP GFAHGF+ L
Sbjct: 66 GEHSQAKLVRVIKGKVIDVAVDLRKSSPTFGKYVAVELSEDNKRQFFIPRGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKD 166
YKV + Y+ + ++ + W D+ + I W + D +L SEKD
Sbjct: 126 DEAIFTYKVDNVYAPQSEASIRWNDEHVGIKWAIDPKDILL---SEKD 170
>gi|319426925|gb|ADV54999.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella putrefaciens 200]
Length = 179
Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 100/170 (58%), Gaps = 11/170 (6%)
Query: 6 VRILKTRKFEDSRGWF----SQTYSSKLLKELGL-QDVFVQDNHSFSFDCGTIRGLHFQ- 59
V + + + F D RG+F Q+Y L GL VFVQDNHS S +RGLH+Q
Sbjct: 11 VLVFEPQVFGDERGFFMETFRQSYFDDCLANRGLPAAVFVQDNHSRS-QQNVLRGLHYQL 69
Query: 60 -RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
+P Q KLVR AG IFD+AVDIR NS TYG WV +SA+N LQ++IP GFAHGF
Sbjct: 70 LQP---QGKLVRVCAGSIFDVAVDIRENSSTYGKWVGRILSADNHLQMWIPPGFAHGFYV 126
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
L +VIY+ TD+Y+ + + +AW I WPLL + S + D +
Sbjct: 127 LSDYADVIYRCTDYYAPQDEYVLAWDHADFAIDWPLLAAPILSTRDSDAS 176
>gi|120437611|ref|YP_863297.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gramella forsetii KT0803]
gi|117579761|emb|CAL68230.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gramella forsetii KT0803]
Length = 181
Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 102/170 (60%), Gaps = 7/170 (4%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
++K R FED RG F +TY K EL G+ + FVQDN S S G +RG+H+Q+ +AQ
Sbjct: 13 LIKPRIFEDHRGIFLETYQRKRFAELSGIDEEFVQDNQSVS-QFGVLRGMHYQKGEFAQT 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
K+VR I G++ D+ VD+R +SPT+ S + N Q+Y+PTGF HGF+TL +
Sbjct: 72 KIVRVIYGKVLDVVVDLRPDSPTFKKTFSTILDDQNLNQLYVPTGFGHGFLTLSEKSVFA 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQ 174
YK +Y+ ++G+ + D ++I W P + IL SEKD+ LP Q
Sbjct: 132 YKCDQYYTPGSEAGIIFNDPDLNINWNFPEREMIL---SEKDRVLPTFKQ 178
>gi|225350715|ref|YP_002720693.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brachyspira hyodysenteriae
WA1]
gi|225216399|gb|ACN85132.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brachyspira hyodysenteriae
WA1]
Length = 177
Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI I++ ED RG+F + + + LK+ G+ Q N S+S GT+RG+H+Q
Sbjct: 7 NIEGAYIIQNNYIEDERGYFLRLFCNDELKKSGIDFEVKQSNMSYSAKKGTLRGMHYQIA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYA+ K+VRCI G++FD DIR++SPT+G ++E+S NG IYIP AHG TLE
Sbjct: 67 PYAEIKVVRCIKGKVFDAIADIRKDSPTFGQHFTVELSEENGKMIYIPPYVAHGIETLED 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
++ + Y V + + W D +I WP+ D ++ +SEKD+++P
Sbjct: 127 HSMICYFVGASFVPNAYGYLRWNDPFFNIDWPIKDNLI--MSEKDKSIP 173
>gi|254496079|ref|ZP_05108980.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Legionella drancourtii
LLAP12]
gi|254354721|gb|EET13355.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Legionella drancourtii
LLAP12]
Length = 166
Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 88/128 (68%), Gaps = 4/128 (3%)
Query: 39 FVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEI 98
FVQDNHS S +RGLH+Q AQ KLVR +AG +FD+AVD+RRNSPT+G WV +
Sbjct: 19 FVQDNHSRSAK-NVLRGLHYQ-IKQAQGKLVRVVAGEVFDVAVDVRRNSPTFGQWVGEIL 76
Query: 99 SANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTI 158
+A N Q++IP GFAHGF+ L + E++YK TDF++ E++ +AW D + I WP
Sbjct: 77 TAKNYKQLWIPEGFAHGFVVLSDSAELLYKTTDFWAPEYEQCIAWDDPELAIAWPFAG-- 134
Query: 159 LPSVSEKD 166
+P +S+K+
Sbjct: 135 MPQLSKKE 142
>gi|317154956|ref|YP_004123004.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio aespoeensis
Aspo-2]
gi|316945207|gb|ADU64258.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio aespoeensis
Aspo-2]
Length = 183
Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 97/159 (61%), Gaps = 3/159 (1%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKL 68
L+ F D RG F++ Y + L+ +GL+ Q N S + G+IRG+HFQ P+A+ K+
Sbjct: 14 LEDAPFADQRGRFARIYCAHELESIGLRKPIAQANISLTRQKGSIRGMHFQTVPHAEIKI 73
Query: 69 VRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128
+RC+ G +FD+ +D+R+ S TY W +S +Y+P GFAHGF +E + +++Y
Sbjct: 74 IRCLHGAVFDVIIDLRKASETYLQWHGEILSPERAYALYVPEGFAHGFQVIEEDAQLLYL 133
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
TDFY+ E + GV + D +I+I WPL +S+KD+
Sbjct: 134 HTDFYTPECEGGVRFDDPAINIAWPLPPR---DISDKDR 169
>gi|240167895|ref|ZP_04746554.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium kansasii ATCC
12478]
Length = 183
Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 95/152 (62%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ +++++T D+RG F + + + L+ L Q NHS + G +RG+HFQ PP
Sbjct: 8 ISDLKVVQTLPHRDARGAFVRLFCANDLQSLLGHRQIAQINHSRTSHAGAVRGMHFQYPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+A+ K+VRC++GR++D+AVD+R SPT+ W + E++ ++ + IP GFAHGF LE +
Sbjct: 68 HAEMKMVRCLSGRVWDVAVDLRSGSPTFLRWHAQELAPDDAQMLVIPEGFAHGFQVLEPD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
+E++Y T FY + G+ D + I WPL
Sbjct: 128 SELLYLHTAFYHPPSEGGLRHDDPRLAIAWPL 159
>gi|300770496|ref|ZP_07080375.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingobacterium spiritivorum
ATCC 33861]
gi|300762972|gb|EFK59789.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingobacterium spiritivorum
ATCC 33861]
Length = 182
Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 104/171 (60%), Gaps = 7/171 (4%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+L+ K+ DSRG+F ++++ K +L G FVQDN S+S G +RGLH Q YAQA
Sbjct: 13 VLEPDKYGDSRGYFMESFNEKTFNDLTGTSTHFVQDNQSYS-TRGVLRGLHAQAGDYAQA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR + G + DIAVD+R S T+G V++ +SA+N LQ+++P GF HGF+ L
Sbjct: 72 KLVRVLEGEVIDIAVDVRAGSSTFGQHVAVRLSADNNLQLFVPRGFLHGFVVLSETATFF 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQI 175
YK +FY+ E + GV D+ + I W P+ + IL S+KD+ ++
Sbjct: 132 YKCDNFYNKESECGVHPLDEDLAIDWKIPVEEMIL---SDKDKEAKGFKEV 179
>gi|120598297|ref|YP_962871.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sp. W3-18-1]
gi|120558390|gb|ABM24317.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sp. W3-18-1]
Length = 178
Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 98/166 (59%), Gaps = 9/166 (5%)
Query: 6 VRILKTRKFEDSRGWF----SQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQR 60
V + + ++F D RG+F Q+Y E G +FVQ+NHS S +RGLHFQR
Sbjct: 11 VLVFEPQRFGDERGFFMETFRQSYFDACFTERGFSLPIFVQENHSRS-QQNVLRGLHFQR 69
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR G IFD+AVDIR NSPTYG WV +SA+N LQ++ P GFAHGF L
Sbjct: 70 LQ-PQGKLVRVCTGSIFDVAVDIRANSPTYGQWVGRVLSADNRLQMWTPPGFAHGFYVLS 128
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+VIY+ TD+Y+ + + W + I WPL+ P +S++D
Sbjct: 129 EFADVIYRCTDYYAPHDEYVLGWNNTDFSIDWPLIAE--PLLSDRD 172
>gi|307130156|ref|YP_003882172.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dickeya dadantii 3937]
gi|306527685|gb|ADM97615.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dickeya dadantii 3937]
Length = 178
Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 100/167 (59%), Gaps = 6/167 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I V+I++ + F D+RG+F +T+ +E+ D+ FVQDNHS S G +RGLHFQ
Sbjct: 8 IQGVKIIQPKVFGDARGFFLETFEKNRYQEMLDIDLDFVQDNHSRSAK-GVLRGLHFQTT 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+ VDIR +SP+YG W + +S N Q +IP G AHGF+ L
Sbjct: 67 -NPQGKLVRVVRGEVFDVVVDIRPDSPSYGRWEGVVLSEENKTQFWIPPGLAHGFVVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+ YK TD+Y+ H+ + W D I I WP+ P +SEKD+
Sbjct: 126 LADFEYKCTDYYNPAHEGCLLWNDADIAIDWPI---ATPLLSEKDKK 169
>gi|887635|emb|CAA61415.1| strX [Streptomyces glaucescens]
gi|3256045|emb|CAA07373.1| StrX [Streptomyces glaucescens]
Length = 182
Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 104/170 (61%), Gaps = 3/170 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ + D RG+FS+++ + + GL+ VQ N SF+ G++RG H+Q P A+AK
Sbjct: 13 LIELSELRDERGFFSRSFCREEFERAGLEPAVVQCNLSFNHRAGSLRGFHYQTEPNAEAK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
+RC G I+D+ VD+R +SPT+ E++A+N L +++P FAH ++TL +TE +Y
Sbjct: 73 TIRCTRGAIYDVIVDLRPDSPTFLRHFGAELTADNRLALHVPRNFAHAYLTLADDTETVY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+V+ Y+ + G+ W D ++ + WP + VS+KD P L+++ +
Sbjct: 133 QVSAAYTPGAERGLRWNDPALGVEWPAPVKL---VSDKDAGWPLLSEVPA 179
>gi|313114790|ref|ZP_07800290.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622845|gb|EFQ06300.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 197
Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 98/180 (54%), Gaps = 5/180 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +++ + F D RG+F +TY E G+ FVQDN S S G +RGLHFQ+
Sbjct: 19 EIPGVVVIEPQVFGDDRGYFMETYQKDQFAEAGIDKEFVQDNQSRSTR-GVLRGLHFQKN 77
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G +FD+AVD R +S T+G WV + +S N YIP GFAHGF+ L
Sbjct: 78 -HTQGKLVRVTKGEVFDVAVDCRPHSATFGKWVGVTLSEENKKMFYIPEGFAHGFLVLSD 136
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
E YK TD Y + G+ + D ++++ WP + ++ + PF Q FEY
Sbjct: 137 VAEFCYKCTDVYDPTSEGGIPYDDPTVNVQWPDCGCEHKTSAKDKLHEPFAAQ---KFEY 193
>gi|296242299|ref|YP_003649786.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermosphaera aggregans DSM
11486]
gi|296094883|gb|ADG90834.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermosphaera aggregans DSM
11486]
Length = 183
Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 109/181 (60%), Gaps = 6/181 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I + +++ +F D RG+F++ Y + FVQ N SFS G IRGLH+Q
Sbjct: 9 LDIPGIVLVEYTRFPDERGFFAELYKRTDFLANDIPYDFVQTNLSFS-RRGVIRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLV I+GR++D+AVDIR+ SP +G +V + + G ++IP GFAHGF LE
Sbjct: 68 KPMEQGKLVYVISGRVYDVAVDIRKGSPWFGKYVGVFLEP--GYALWIPPGFAHGFQALE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ +Y VT YS +H+ + W D+ I + WP+ + ++ +SEKD+ P L + ++ FE
Sbjct: 126 -DAYFLYLVTKEYSPQHERCIKWDDQEIGVQWPVKENVI--LSEKDKKCPPLREAETNFE 182
Query: 181 Y 181
Y
Sbjct: 183 Y 183
>gi|126175069|ref|YP_001051218.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS155]
gi|125998274|gb|ABN62349.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS155]
Length = 179
Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 97/170 (57%), Gaps = 9/170 (5%)
Query: 2 NINPVRILKTRKFEDSRGWF----SQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGL 56
+ V + + + F D RG+F Q+Y + G + VFVQ+NHS S +RGL
Sbjct: 7 ELAEVLVFEPQVFGDERGFFMETFRQSYFDACFAQRGFESCVFVQENHSRS-QRNVLRGL 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
HFQR Q KLVR AG IFD+AVDIR +S TYG WV +SA N LQ++IP GFAHGF
Sbjct: 66 HFQRRK-PQGKLVRVCAGSIFDVAVDIRPDSATYGKWVGRVLSAENHLQMWIPPGFAHGF 124
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
L EVIY+ T +Y E + VAW I WPL+ P +S +D
Sbjct: 125 YVLSDYAEVIYQCTQYYDPEDEGVVAWNSAEFAIDWPLIAA--PILSARD 172
>gi|223937498|ref|ZP_03629402.1| dTDP-4-dehydrorhamnose 3,5-epimerase [bacterium Ellin514]
gi|223893849|gb|EEF60306.1| dTDP-4-dehydrorhamnose 3,5-epimerase [bacterium Ellin514]
Length = 182
Score = 130 bits (328), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 104/181 (57%), Gaps = 14/181 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGL----QDVFVQDNHSFSFDCGTIRGLHF 58
+ V +LK R FED RG F +TY+ L +ELG+ ++ F +H +RG+HF
Sbjct: 12 LTSVFVLKPRVFEDQRGSFVKTYNENLFEELGIPFKPREEFFSVSHK-----NVVRGMHF 66
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
Q A KLV C G++ D+ VD+R+ S YG +S E+S +N ++IP GFAHGF+
Sbjct: 67 QLVGAAHDKLVYCPLGKVLDVVVDLRKWSKNYGKTMSRELSGSNREMLFIPVGFAHGFLA 126
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
LE NT ++Y+ + +S +HD+G W D WP+ + IL S++D+ P L SP
Sbjct: 127 LEDNTMMVYQTSTVHSPQHDAGFLWNSFGFD--WPVQNPIL---SDRDKAFPALKDFQSP 181
Query: 179 F 179
F
Sbjct: 182 F 182
>gi|326789497|ref|YP_004307318.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Clostridium
lentocellum DSM 5427]
gi|326540261|gb|ADZ82120.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Clostridium
lentocellum DSM 5427]
Length = 182
Score = 130 bits (327), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 102/174 (58%), Gaps = 7/174 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V+IL+ ED+RG YS K L E G+ F++++ GT+ G+HFQ P
Sbjct: 9 LKEVKILEYACKEDNRGLKFSNYSEKELLENGIDVHFIEEDVYCPIKSGTLYGIHFQNNP 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KL+ CI GR D A+D+R++SP Y W+S+E+S N QI IP GF H F++LE N
Sbjct: 69 VAQTKLLYCIEGRGIDYAIDLRKDSPQYLKWISVELSKENRRQILIPKGFGHAFISLEDN 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL-------PSVSEKDQNL 169
T+V+ ++ +++ ++ +AW D I I +P+ + IL P + + D NL
Sbjct: 129 TKVVMRIDEYFDNKYSRQIAWNDSQIAIQYPVKNPILAQHDIDAPKLRDSDCNL 182
>gi|16329495|ref|NP_440223.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Synechocystis sp. PCC 6803]
gi|1651977|dbj|BAA16903.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Synechocystis sp. PCC 6803]
Length = 189
Score = 130 bits (327), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 103/173 (59%), Gaps = 3/173 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I +R + + D RG+ ++ + ++ LKE+G Q NH+ + GT+RG+H+Q
Sbjct: 12 LGIAGLRTVIRQPIGDRRGFLARLFCAEELKEVGWHKPIAQINHTHTAQGGTVRGMHYQN 71
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP A+ KLV CI G+++D+AVD+R +SPT+ W + +SA+N + IP G AHGF L
Sbjct: 72 PPSAEMKLVTCIRGQVWDVAVDLRVDSPTFLTWQGVVLSADNNRALLIPEGCAHGFQALS 131
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ E+IY + Y+ + G+ QD + I WP + +S++DQN P L+
Sbjct: 132 DDVELIYCHSVAYNPMAEGGLNPQDPRLGIEWP---QAITELSQRDQNHPLLD 181
>gi|241207189|ref|YP_002978285.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240861079|gb|ACS58746.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 180
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 96/162 (59%), Gaps = 3/162 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ D RG F++T+ ++ GL V+ Q N S + GT+RG+H+Q P + K
Sbjct: 13 VVEVDARSDDRGMFARTFDAQTFAAQGLVPVYPQCNISQNHKRGTLRGMHYQAQPRPEIK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR GR+FD+AVD+R +SP+Y W S+E+ A YIP G AHGF+TLE N E+ Y
Sbjct: 73 LVRATRGRVFDVAVDLRPDSPSYLKWASVELDAIRHNAFYIPAGCAHGFLTLEDNCELFY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
++++ Y E GV W D + I WP +I +SE+D L
Sbjct: 133 QMSEAYVPELARGVRWDDPAFSIGWPFPPSI---ISERDAAL 171
>gi|217972671|ref|YP_002357422.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS223]
gi|217497806|gb|ACK45999.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS223]
Length = 179
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 98/170 (57%), Gaps = 9/170 (5%)
Query: 2 NINPVRILKTRKFEDSRGWF----SQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGL 56
+ V + + + F D RG+F Q+Y + G + VFVQ+NHS S +RGL
Sbjct: 7 ELAEVLVFEPQVFGDERGFFMETFRQSYFDACFAQRGFESFVFVQENHSRS-QRNVLRGL 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
HFQR Q KLVR AG IFD+AVDIR +S TYG WV +SA N LQ++IP GFAHGF
Sbjct: 66 HFQRRK-PQGKLVRVCAGSIFDVAVDIRADSATYGKWVGRVLSAENHLQMWIPPGFAHGF 124
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
L +VIY+ T +Y+ E + VAW I WPL+ P +S +D
Sbjct: 125 YVLSDYADVIYQCTQYYAPEDEGVVAWNSAEFAIDWPLIAA--PILSTRD 172
>gi|237654463|ref|YP_002890777.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thauera sp. MZ1T]
gi|237625710|gb|ACR02400.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thauera sp. MZ1T]
Length = 178
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 100/170 (58%), Gaps = 5/170 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I++ + F D RG+F +T+ + +E G+ FVQDNHS S G +RGLHFQ+ Q
Sbjct: 11 VLIIEPKAFGDHRGFFLETFQVERYREAGITLPFVQDNHSRS-QRGVLRGLHFQKT-RPQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV G ++D+AVDI S TYG +V +E++ +N Q+++P G+AHGF L +
Sbjct: 69 GKLVSVSRGAVYDVAVDIDPASATYGKFVGVELNDDNHRQMWVPPGYAHGFCVLSEVADF 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK TDFY + G+AW D + I WP+ P +S KD N P L +
Sbjct: 129 QYKCTDFYLPADEGGLAWNDPDVGIPWPIE---APQLSAKDMNNPRLRDL 175
>gi|295102107|emb|CBK99652.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Faecalibacterium prausnitzii
L2-6]
Length = 188
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 98/180 (54%), Gaps = 5/180 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +++ + F D RG+F +TY E G+ FVQDN S S G +RGLHFQ+
Sbjct: 10 EIPGVVVIEPQVFGDDRGYFMETYQKDQFAEAGIDKEFVQDNQSRSTR-GVLRGLHFQKN 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G ++D+AVD R NS T+G WV + +S N YIP GFAHGF+ L
Sbjct: 69 -HTQGKLVRVTRGEVYDVAVDCRPNSATFGKWVGVILSEENKKMFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
E YK TD Y + G+ + D ++++ WP + ++ + PF Q FEY
Sbjct: 128 VAEFCYKCTDVYDPTSEGGIPYDDPTVNVQWPDCGCEHKTSAKDKLHEPFAAQ---KFEY 184
>gi|237748596|ref|ZP_04579076.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oxalobacter formigenes
OXCC13]
gi|229379958|gb|EEO30049.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oxalobacter formigenes
OXCC13]
Length = 191
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 103/174 (59%), Gaps = 4/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+++ V I++ + F DSRG+F ++Y+ + K+ GL FVQDN S S GTIRG+HFQ+
Sbjct: 7 SLDGVLIIEPKVFADSRGYFFESYNQESFKKAGLDYSFVQDNESKSVH-GTIRGIHFQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
++QAKLVR + G + D+ VD+R S T+G V++E+S N Q+ IP GF HGF L
Sbjct: 66 EFSQAKLVRVLEGNVLDVVVDLRMGSHTFGQHVAVELSGENKRQLLIPRGFGHGFSVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQ 174
YK +FY + + + D + I W + D IL +SEKD+ P Q
Sbjct: 126 TAVFSYKCDNFYMPASEGSILFNDPELAIDWQIPPDDIL--LSEKDKKSPGFQQ 177
>gi|332827873|gb|EGK00595.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dysgonomonas gadei ATCC
BAA-286]
Length = 182
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI V I++ R F D RG+F ++Y +E + F+QDN S S G +RGLH+Q
Sbjct: 7 NIKGVWIIEPRVFTDERGYFMESYRKDAFEEHIGRVEFIQDNESKS-TRGVLRGLHYQTG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
YAQAKLVR + G + D+ VD+R++SPT+G +++E++ +N Q+++P GFAHGF+ L
Sbjct: 66 KYAQAKLVRVLKGSVLDVVVDLRKSSPTFGKSLAVELTEDNKKQLFVPRGFAHGFLVLSP 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
YKV + Y+ +++ + W D +I+I W + + L +S KD+
Sbjct: 126 EAIFSYKVDNMYAPGYEASLLWNDPTININWGIKEEEL-ILSAKDK 170
>gi|298209185|ref|YP_003717364.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Croceibacter atlanticus
HTCC2559]
gi|83849112|gb|EAP86981.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Croceibacter atlanticus
HTCC2559]
Length = 182
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 106/164 (64%), Gaps = 3/164 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
I++ + F D RG+F + ++ ++ + E L FVQDN S S G IRGLH+Q+ ++QA
Sbjct: 13 IIEPKVFYDERGYFYEQFNEQVFQAETKLNVKFVQDNVSES-KFGVIRGLHYQQGMHSQA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLV + G + D+A+D+R+NSP++G S+ +S+ N Q+++P GFAHGF L
Sbjct: 72 KLVTVLEGEVLDVAIDLRKNSPSFGKQFSMILSSENKKQLFVPKGFAHGFSVLSKTARFF 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
YK +Y+ E ++G+ + D++++I W L D + V++KD++LP
Sbjct: 132 YKCDAYYNKESETGIKYNDETLNIDWQLKDGEII-VNDKDKHLP 174
>gi|53713585|ref|YP_099577.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides fragilis YCH46]
gi|60681865|ref|YP_212009.1| putative LPS biosynthesis related dTDP-4-dehydrorhamnose
3,5-epimerase [Bacteroides fragilis NCTC 9343]
gi|265763906|ref|ZP_06092474.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_16]
gi|52216450|dbj|BAD49043.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides fragilis YCH46]
gi|60493299|emb|CAH08083.1| putative LPS biosynthesis related dTDP-4-dehydrorhamnose
3,5-epimerase [Bacteroides fragilis NCTC 9343]
gi|263256514|gb|EEZ27860.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_16]
gi|301163357|emb|CBW22907.1| putative LPS biosynthesis related dTDP-4-dehydrorhamnose
3,5-epimerase [Bacteroides fragilis 638R]
Length = 182
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V I++ + F D RG+F + + + Q F+QDN S S GT+RGLH+Q+
Sbjct: 7 EIDGVWIIEPKIFFDPRGYFMEAFKQQEFDATIGQINFIQDNESQS-SFGTLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR I G + D+AVD+R++SPT+G +S+ +S N Q++IP GFAHGF+
Sbjct: 66 AYSQAKLVRVIKGEVLDVAVDLRKSSPTFGKHISVLLSDENKRQLFIPRGFAHGFLVKSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YKV + Y+ + ++ + + D ++ I WP+ D+ L +SEKD+
Sbjct: 126 IAIFTYKVDNIYAPQSEASILYNDPALAIDWPIADSQL-VMSEKDKQ 171
>gi|160943814|ref|ZP_02091045.1| hypothetical protein FAEPRAM212_01312 [Faecalibacterium prausnitzii
M21/2]
gi|158444988|gb|EDP21991.1| hypothetical protein FAEPRAM212_01312 [Faecalibacterium prausnitzii
M21/2]
gi|295104041|emb|CBL01585.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Faecalibacterium prausnitzii
SL3/3]
Length = 188
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 99/180 (55%), Gaps = 5/180 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +++ + F D RG+F +TY E G+ FVQDN S S G +RGLHFQ+
Sbjct: 10 EIPGVVVIEPQVFGDDRGYFMETYQKDQFAEAGIDKEFVQDNQSRSTR-GVLRGLHFQKN 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G ++D+AVD R +S T+G WV + +S +N YIP GFAHGF+ L
Sbjct: 69 -HTQGKLVRVTKGEVYDVAVDCRPHSATFGKWVGVTLSEDNKKMFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
E YK TD Y + G+ + D ++++ WP + ++ + PF Q FEY
Sbjct: 128 VAEFCYKCTDVYDPTSEGGIPYDDPTVNVQWPDCGCEHKTSAKDKLHEPFAAQ---KFEY 184
>gi|170724101|ref|YP_001751789.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida W619]
gi|169762104|gb|ACA75420.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida W619]
Length = 180
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 104/176 (59%), Gaps = 6/176 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I++ + F DSRG+F ++++++ L G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVLIIEPKLFGDSRGFFFESFNAREFARLTGFDAHFVQDNHSRS-QRGVLRGLHYQ- 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G + D+AVDIRR+SPT+G WV+ + A + Q +IP GFAHGF+ L
Sbjct: 65 IDNPQGKLVRVVQGEVLDVAVDIRRSSPTFGRWVATRLCAEDHRQFWIPPGFAHGFLVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + +YK TD+Y+ + + W D + I W + P +S KDQ L D
Sbjct: 125 ESADFLYKTTDYYNPAAERCIRWDDPQLAIDWGVE---APLLSAKDQAGALLADAD 177
>gi|307635121|gb|ADN78402.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geobacter sulfurreducens
KN400]
Length = 186
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 99/171 (57%), Gaps = 3/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+N V ++ ED RG+FS+ + ++ +GL VQ NHSF+ GT+RG+HFQ PP
Sbjct: 11 LNGVYAIRRTVAEDHRGFFSRFFCAEEFTAIGLTAPIVQINHSFTRKMGTVRGMHFQHPP 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ + K+V C+ G +FD+AVD+R S T+ W +++ N ++IP GFAHGF TL +
Sbjct: 71 HTETKIVSCLKGCVFDVAVDLRYGSETFLKWHGEILTSENRKSLFIPEGFAHGFQTLSED 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
E+IY T Y + + + D I I WPL + +S +D++ P +
Sbjct: 131 CELIYLHTSAYDLHSEGALNAIDPQIAIEWPL---AIAEMSNRDRSHPLIG 178
>gi|253565574|ref|ZP_04843029.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_2_5]
gi|251945853|gb|EES86260.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_2_5]
Length = 182
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V I++ + F D RG+F + + + Q F+QDN S S GT+RGLH+Q+
Sbjct: 7 EIDGVWIIEPKIFFDPRGYFMEAFKQQEFDATIGQINFIQDNESQS-SFGTLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR I G + D+AVD+R++SPT+G +S+ +S N Q++IP GFAHGF+
Sbjct: 66 TYSQAKLVRVIKGEVLDVAVDLRKSSPTFGKHISVLLSDENKRQLFIPRGFAHGFLVKSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YKV + Y+ + ++ + + D ++ I WP+ D+ L +SEKD+
Sbjct: 126 IAIFTYKVDNIYAPQSEASILYNDPALAIDWPIADSQL-VMSEKDKQ 171
>gi|332701642|ref|ZP_08421730.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio africanus str.
Walvis Bay]
gi|332551791|gb|EGJ48835.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio africanus str.
Walvis Bay]
Length = 181
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 98/174 (56%), Gaps = 5/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V ++K F D RG+F +T+ ++ + G+ FVQDN S S G +RGLHFQR
Sbjct: 7 DIEGVLLIKPNAFGDHRGFFLETFQAQRYGQAGIGLPFVQDNLSRSRQ-GILRGLHFQRT 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLV GR+FD+AVDIR SPT+G W + N Q+++ G AHGF +
Sbjct: 66 -YPQGKLVSVTRGRVFDVAVDIRPASPTFGKWYGAVLDDENHHQLWVAPGLAHGFCVMSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK TD+Y E + + W D I I WP+ P++S+KD P L ++
Sbjct: 125 TADFTYKCTDYYHPEDEGCLRWNDPDIGIDWPVQS---PTLSDKDAKAPSLREL 175
>gi|160876120|ref|YP_001555436.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS195]
gi|160861642|gb|ABX50176.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS195]
gi|315268317|gb|ADT95170.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS678]
Length = 179
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 96/170 (56%), Gaps = 9/170 (5%)
Query: 2 NINPVRILKTRKFEDSRGWF----SQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGL 56
+ V + + + F D RG+F Q+Y + G + VFVQ+NHS S +RGL
Sbjct: 7 ELAEVLVFEPQVFGDERGFFMETFRQSYFDACFAQRGFESFVFVQENHSRS-QRNVLRGL 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
HFQR Q KLVR AG IFD+AVDIR +S TYG WV +SA N LQ++ P GFAHGF
Sbjct: 66 HFQRRK-PQGKLVRVCAGSIFDVAVDIRSDSATYGKWVGRVLSAENHLQMWTPPGFAHGF 124
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
L EVIY+ T +Y E + VAW I WPL+ P +S +D
Sbjct: 125 YVLSDYAEVIYQCTQYYDPEDEGVVAWNSAEFAIDWPLIAA--PILSARD 172
>gi|170290461|ref|YP_001737277.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174541|gb|ACB07594.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 180
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 100/166 (60%), Gaps = 7/166 (4%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F DSRG+F++ Y G+ FVQ N S+S G +RGLH+Q P Q KLV I+
Sbjct: 22 FPDSRGFFTELYKKSDFTGNGIPHDFVQVNLSYSRK-GVVRGLHYQLKPMEQGKLVYVIS 80
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G++FD+AVDIRR S +G +VS+ + GL ++IP GFAHGF LE +T +Y VT Y
Sbjct: 81 GKVFDVAVDIRRGSKWFGRYVSVLLEP--GLALWIPPGFAHGFQALE-DTYFLYLVTKEY 137
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
S +H+ + W D+ I I WPL + +L SE+D P L ++ F
Sbjct: 138 SPQHERCIKWDDQEIGIEWPLKEAVL---SERDSKCPPLKSCETNF 180
>gi|85713612|ref|ZP_01044602.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Nitrobacter sp.
Nb-311A]
gi|85699516|gb|EAQ37383.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Nitrobacter sp.
Nb-311A]
Length = 184
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 99/170 (58%), Gaps = 5/170 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ R F D RG+F +TY E G+ FVQDN S S G +RGLH Q P + Q K
Sbjct: 13 IIEPRLFGDQRGFFLETYQFPRYSEHGVACPFVQDNLSRSAR-GVLRGLHLQNP-FPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G++ D+AVD+R SP +G V++E+S N Q+++P GFAHGF+ L + Y
Sbjct: 71 LVTVLRGKVLDVAVDVRVGSPNFGRHVAVELSDENRRQLWVPRGFAHGFVVLSETADFFY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
K D YS +++ + W D +I I W PS+S KD + P L ++ +
Sbjct: 131 KCDDLYSPKNELSIRWNDPAIGIDW---GVETPSLSAKDADAPLLAEVKN 177
>gi|209551787|ref|YP_002283704.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537543|gb|ACI57478.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 180
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 100/167 (59%), Gaps = 3/167 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ D RG F++T+ ++ + GL V+ Q N S + GT+RG+H+Q P + K
Sbjct: 13 VVEVDARSDDRGMFARTFDAQTFADRGLVPVYPQCNVSQNHRRGTLRGMHYQAKPRPEIK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR GR+FD+A+D+R +SP+Y W S+E+ A + YIP G AHGF+TLE + E+ Y
Sbjct: 73 LVRATRGRVFDVALDLRPDSPSYLQWASVELDAASCNAFYIPAGCAHGFLTLEDDCELFY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
++++ Y E GV W D + I WP ++ +SE+D L +Q
Sbjct: 133 QMSETYVPELARGVRWDDPAFSIAWPFAPSV---ISERDAVLESYSQ 176
>gi|153001398|ref|YP_001367079.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS185]
gi|151366016|gb|ABS09016.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS185]
Length = 179
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 96/166 (57%), Gaps = 9/166 (5%)
Query: 6 VRILKTRKFEDSRGWF----SQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQR 60
V + + + F D RG+F Q+Y + G + VFVQ NHS S +RGLHFQR
Sbjct: 11 VLVFEPQVFGDERGFFMETFRQSYFDACFAQRGFESCVFVQKNHSRS-QRNVLRGLHFQR 69
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR AG IFD+AVDIR +S TYG WV +SA N LQ++IP GFAHGF L
Sbjct: 70 RK-PQGKLVRVCAGSIFDVAVDIRPDSATYGKWVGRVLSAENHLQMWIPPGFAHGFYVLS 128
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+VIY+ T +Y E +S VAW I WPL+ P +S +D
Sbjct: 129 DYADVIYQCTQYYDPEDESVVAWNSAEFAIDWPLITA--PILSTRD 172
>gi|298372513|ref|ZP_06982503.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroidetes oral taxon 274
str. F0058]
gi|298275417|gb|EFI16968.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroidetes oral taxon 274
str. F0058]
Length = 182
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 98/163 (60%), Gaps = 6/163 (3%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F DSRG+F++ Y+ + G+ + FVQDN S S G +RGLH Q+ AQAKLV+ I
Sbjct: 19 FADSRGYFTELYNENRYRAYGIDNNFVQDNLSRS-SYGVVRGLHLQKGESAQAKLVKVIV 77
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G+++D+AVD+R+ S TYG W +E+S N LQ IP GFAHGF L YK + Y
Sbjct: 78 GKVWDVAVDLRQGSSTYGEWFGVELSDENHLQFLIPRGFAHGFSVLSPTAIFSYKCDNIY 137
Query: 134 SVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQ 174
+ + G+ + D ++ I W P+ + I VS+KD LP +Q
Sbjct: 138 DKQAEGGIIYNDPTLAIDWKVPVGEMI---VSDKDLLLPTFDQ 177
>gi|86151976|ref|ZP_01070189.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni subsp.
jejuni 260.94]
gi|56783469|emb|CAI38722.1| putative nucleotidyl-sugar epimerase [Campylobacter jejuni]
gi|85841084|gb|EAQ58333.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni subsp.
jejuni 260.94]
Length = 209
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 93/146 (63%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I+K + D RG+F + + + +E+G++ +Q NHS + G+IRG+H+Q PP
Sbjct: 11 IEGVYIIKPKPICDERGYFERYFCTNDFEEIGMKKPIIQINHSKTIGKGSIRGMHYQIPP 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ + K+VRC+ G I D+A+DIR+NSPT+ + S+E++ N +YIP GFAHGF L
Sbjct: 71 FCETKIVRCLKGSILDVAIDIRKNSPTFLQYFSIELNEVNNKYLYIPEGFAHGFQVLSDE 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSI 148
E++Y VT ++ D G+ DK+I
Sbjct: 131 AEILYLVTQEFNSSADRGINPFDKAI 156
>gi|315649938|ref|ZP_07903018.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium saburreum DSM
3986]
gi|315487708|gb|EFU78011.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium saburreum DSM
3986]
Length = 183
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 86/141 (60%), Gaps = 2/141 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F+D RG+F +TY+ E GL FVQDN S S G +RGLHFQ+ + Q KLVR ++
Sbjct: 22 FKDDRGYFVETYNKNDFAEAGLNMEFVQDNQSKS-SKGVLRGLHFQKE-HPQGKLVRVLS 79
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G ++D+AVD+R++S TYG + + +S N Q YIP GFAHGF L YK TDFY
Sbjct: 80 GEVYDVAVDLRKDSKTYGKYFGVILSDENKKQFYIPEGFAHGFAVLSDEAVFAYKCTDFY 139
Query: 134 SVEHDSGVAWQDKSIDITWPL 154
+ G+ + D I I WP+
Sbjct: 140 HPNDEGGLKYDDPDIGIDWPI 160
>gi|54293740|ref|YP_126155.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Legionella pneumophila str.
Lens]
gi|53753572|emb|CAH15027.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Legionella pneumophila str.
Lens]
Length = 187
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 104/177 (58%), Gaps = 5/177 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ ++I++ + + D RG+F +++ +K +EL G+ D FVQDN S S G +RGLH+Q
Sbjct: 7 QIDELKIIEPKIYGDERGFFYESFQAKRYEELLGITDRFVQDNFSRS-QKGVLRGLHYQS 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLV + G + D+AVDIR SPT+G WV + +S N Q +IP GFAHGF L
Sbjct: 66 QQ-TQGKLVSVLTGEVLDVAVDIRLGSPTFGQWVGVILSGENKRQFWIPKGFAHGFYVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ YK TD+Y E + + + D + I WPL + + +S KD L+ ID+
Sbjct: 125 AMADFAYKCTDYYHPESEFSIHYLDPQLAIDWPLGEQV--QLSPKDAAAKPLSLIDA 179
>gi|261822264|ref|YP_003260370.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pectobacterium wasabiae
WPP163]
gi|261606277|gb|ACX88763.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pectobacterium wasabiae
WPP163]
Length = 178
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 100/163 (61%), Gaps = 6/163 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYA 64
+I++ + F D+RG+F +T+ K +++ D+ FVQDNHS S G +RGLHFQ+
Sbjct: 11 AKIIQPKVFGDARGFFLETFEKKRYQKMLDIDLDFVQDNHSRS-SKGVLRGLHFQKT-NP 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+ VDIR++SPTYG W + +S N Q ++P G AHGF+ L +
Sbjct: 69 QGKLVRVVRGEVFDVVVDIRQDSPTYGKWCGVTLSEENKTQFWLPPGLAHGFVVLSDIVD 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
YK TD+Y + + W D + I WP+ + P +SEKD+
Sbjct: 129 FEYKCTDYYDPSDEGCLLWNDPKVGIKWPISE---PLLSEKDK 168
>gi|315124869|ref|YP_004066873.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|315018591|gb|ADT66684.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
Length = 196
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 93/146 (63%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I+K + D RG+F + + + +E+G++ +Q NHS + G+IRG+H+Q PP
Sbjct: 11 IEGVYIIKPKPICDERGYFERYFCTNDFEEIGMKKPIIQINHSKTIGKGSIRGMHYQIPP 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ + K+VRC+ G I D+A+DIR+NSPT+ + S+E++ N +YIP GFAHGF L
Sbjct: 71 FCETKIVRCLKGSILDVAIDIRKNSPTFLQYFSIELNEVNNKYLYIPEGFAHGFQVLSDE 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSI 148
E++Y VT ++ D G+ DK+I
Sbjct: 131 AEILYLVTQEFNSSADRGINPFDKAI 156
>gi|160888244|ref|ZP_02069247.1| hypothetical protein BACUNI_00653 [Bacteroides uniformis ATCC 8492]
gi|156862190|gb|EDO55621.1| hypothetical protein BACUNI_00653 [Bacteroides uniformis ATCC 8492]
Length = 182
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 104/165 (63%), Gaps = 2/165 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V +++ + F D+RG+F + + + + F+QDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPKVFHDARGYFMEAFKEEEFRAHVGNVHFIQDNESKS-SFGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+QAKLVR I G++ D+AVD+R++SPT+G +VS+E+S N Q +IP GFAHGF+ L
Sbjct: 66 DCSQAKLVRVIKGKVLDVAVDLRKSSPTFGKYVSVELSEENKRQFFIPRGFAHGFLVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YKV + Y+ + ++ + + D++I I WP+ L +S+KD
Sbjct: 126 EAVFTYKVDNVYAPQSEASIRFDDETIGIEWPVATEQLL-LSDKD 169
>gi|270296766|ref|ZP_06202965.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D20]
gi|317480124|ref|ZP_07939234.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 4_1_36]
gi|270272753|gb|EFA18616.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D20]
gi|316903671|gb|EFV25515.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 4_1_36]
Length = 182
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 104/165 (63%), Gaps = 2/165 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V +++ + F D+RG+F + + + + F+QDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPKVFHDARGYFMEAFKEEEFRAHVGNVHFIQDNESKS-SFGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+QAKLVR I G++ D+AVD+R++SPT+G +VS+E+S N Q +IP GFAHGF+ L
Sbjct: 66 DCSQAKLVRVIKGKVLDVAVDLRKSSPTFGKYVSVELSEENKRQFFIPRGFAHGFLVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YKV + Y+ + ++ + + D++I I WP+ L +S+KD
Sbjct: 126 EAVFTYKVDNVYAPQSEASIRFDDEAIGIEWPVATEQLL-LSDKD 169
>gi|319788849|ref|YP_004090164.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruminococcus albus 7]
gi|315450716|gb|ADU24278.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruminococcus albus 7]
Length = 194
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 98/160 (61%), Gaps = 6/160 (3%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG+F +TY+ K ++ GL FVQDN S S G +RGLH+Q + Q KLVR I G
Sbjct: 26 DNRGYFMETYNQKDMEAEGLNYTFVQDNQSSSTK-GVLRGLHYQFN-HPQDKLVRVIRGE 83
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R+ S T+G W ++++ N Q IP FAHGF+ L E YKVTDF+
Sbjct: 84 VFDVAVDLRKGSKTFGKWFGIKLTEENKKQFLIPKNFAHGFIVLSDEAEFCYKVTDFWYP 143
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPS---VSEKD-QNLPF 171
+ G+ W D +I I W + + + + +SEKD +NL F
Sbjct: 144 NDEGGLMWNDPTIGIEWEMPEGMTDADLNLSEKDTKNLSF 183
>gi|109899366|ref|YP_662621.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudoalteromonas atlantica
T6c]
gi|109701647|gb|ABG41567.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudoalteromonas atlantica
T6c]
Length = 187
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 109/181 (60%), Gaps = 8/181 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
++ +K +K D RG+F++ + + L G Q Q NH+++ G++RGLHFQ PP+++
Sbjct: 14 LKKVKRQKLGDERGFFARVFCAAELSICGWQGPIAQINHTYTAKKGSVRGLHFQLPPFSE 73
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV C+ G+++D+ VD+R +S T+ W + +++++NG+ + IP GFAHGF TL + E+
Sbjct: 74 IKLVSCLKGQVWDVVVDLRADSATFLHWHAEKLTSDNGIGLLIPEGFAHGFQTLCDDVEL 133
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLP 185
+Y + Y + ++G+ D + I WPL + SE+DQ L+ EY G+
Sbjct: 134 LYCHSQAYQPKAEAGLNLLDPRLSINWPL---PISQCSERDQAFSLLDA-----EYAGVD 185
Query: 186 L 186
L
Sbjct: 186 L 186
>gi|799235|gb|AAC63615.1| RmlC [Escherichia coli]
Length = 183
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 109/176 (61%), Gaps = 7/176 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ K+ +E +G + FVQDNHS S G IRGLHFQ P
Sbjct: 8 IPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKS-TKGVIRGLHFQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSL-EISANNGLQIYIPTGF-AHGFMTL 119
PY+QAKLVRC+ G ++D+ VDIR++S T+G WV L +SA N Q++IP GF +HGF +
Sbjct: 67 PYSQAKLVRCVVGEVYDVVVDIRKDSKTFGKWVRLVNLSAENKRQLWIPEGFGSHGFEVI 126
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+YK ++Y+ + G+ W D+ + I W I +SEKD P ++
Sbjct: 127 SEVASFLYKTNNYYNATMEKGIRWDDEYLAINWKEKKAI---ISEKDMKQPSFREL 179
>gi|332884076|gb|EGK04356.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dysgonomonas mossii DSM
22836]
Length = 182
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 106/173 (61%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V +++ + F D RG+F ++Y L E + F+QDN S S G +RGLH+Q
Sbjct: 7 SIKGVWVIEPKVFNDERGYFMESYKKNLFDEHIGKIDFIQDNESKS-TRGVLRGLHYQIG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR + G + D+ VD+R++SPT+G ++++E++ N Q+++P G AHGF+ L
Sbjct: 66 EYSQAKLVRALNGSVLDVVVDLRKSSPTFGEYLAVELTDENKKQLFMPRGIAHGFLVLSQ 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
YKV + Y+ H++ + W D S+ I W + + L +S KD+ FL++
Sbjct: 126 EAVFSYKVDNVYAPAHEASLLWSDPSVAINWGIDEKELI-LSPKDKAGKFLSE 177
>gi|227113156|ref|ZP_03826812.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 178
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 98/167 (58%), Gaps = 6/167 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
I+ +I++ + F D+RG+F +T+ K +++ DV FVQDNHS S G +RGLHFQ+
Sbjct: 7 KIHGAKIIQPKVFGDARGFFLETFEKKRYQQMLNIDVDFVQDNHSRS-GKGVLRGLHFQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLV + G +FD+AVDIR SPTYG W + +S N Q ++P G AHGF L
Sbjct: 66 TK-PQGKLVHVVRGEVFDVAVDIRPGSPTYGVWEGVILSEENKTQFWLPPGLAHGFAVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+ YK TD+Y + + W D I I WP+ P +SEKD+
Sbjct: 125 DIADFEYKCTDYYDPSDEGCLLWNDPEIGIEWPISS---PLLSEKDK 168
>gi|325954731|ref|YP_004238391.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Weeksella virosa DSM 16922]
gi|323437349|gb|ADX67813.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Weeksella virosa DSM 16922]
Length = 185
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 99/163 (60%), Gaps = 7/163 (4%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
I++ ++D RG+F ++++ +L E LG + FVQDN S S G +RGLH Q+ +AQA
Sbjct: 13 IIEPTVYQDKRGYFFESFNENILNEILGFRPHFVQDNQSQS-TYGVVRGLHLQQGEHAQA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR + G++ D+ VD+R+NS TYG S+E+S+ N Q++IP GF HGF L
Sbjct: 72 KLVRVLEGKVLDVVVDVRKNSTTYGKSFSIELSSENNRQLFIPKGFLHGFSVLSERATFF 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQ 167
YK FY + ++GV D + I W P D IL SEKDQ
Sbjct: 132 YKCDQFYHKDSENGVYPLDIDLGIDWQIPTEDMIL---SEKDQ 171
>gi|186681547|ref|YP_001864743.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nostoc punctiforme PCC 73102]
gi|186463999|gb|ACC79800.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nostoc punctiforme PCC 73102]
Length = 184
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 98/160 (61%), Gaps = 3/160 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F++++ ++ + GL+ Q N SF++ GTIRG+H+Q P A+ KL+RC G
Sbjct: 21 DHRGFFARSFCAQEFEAHGLKPTVAQCNLSFNYKKGTIRGMHYQILPAAETKLIRCTKGA 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
I+D+ +D+R SP++ + +E++ N +Y+P FAHG+ L TEV+Y+V +FY+
Sbjct: 81 IYDVIIDMRPESPSFLSHIGVELTPENRRALYVPEMFAHGYQALTDETEVVYQVGEFYTP 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
++ G+ + D I WPL T +SEKD N P L +
Sbjct: 141 GYERGLRYDDPFFAIDWPLDVT---EISEKDLNWPLLRMM 177
>gi|251790437|ref|YP_003005158.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dickeya zeae Ech1591]
gi|247539058|gb|ACT07679.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dickeya zeae Ech1591]
Length = 178
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 99/165 (60%), Gaps = 6/165 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I V+I++ + F D+RG+F +T+ K +E+ D+ FVQDNHS S G +RGLHFQ
Sbjct: 8 IQGVKIIQPKVFGDARGFFLETFEKKRYQEMLDIDLDFVQDNHSRSAR-GVLRGLHFQTV 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+ VDIR +S TYG W + +S N Q +IP G AHGF+ L
Sbjct: 67 -NPQGKLVRVVRGEVFDVVVDIRPDSATYGRWEGVLLSEENKAQFWIPPGLAHGFVVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ YK TD+Y+ H+ + W D I I WP+ P +SEKD
Sbjct: 126 LADFEYKCTDYYNPAHEGCLLWNDPDIGIDWPIAS---PLLSEKD 167
>gi|153806362|ref|ZP_01959030.1| hypothetical protein BACCAC_00623 [Bacteroides caccae ATCC 43185]
gi|149131039|gb|EDM22245.1| hypothetical protein BACCAC_00623 [Bacteroides caccae ATCC 43185]
Length = 182
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 104/174 (59%), Gaps = 1/174 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V +++ + F D RG+F + + + + FVQDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPKVFFDERGYFMEAFKKEEFESHIGPVNFVQDNESKS-SFGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR I G + D+AVD+R++SPT+G +VS+ +S N Q +IP GFAHGF L
Sbjct: 66 EYSQAKLVRVIKGEVLDVAVDLRKSSPTFGQYVSVLLSEENKRQFFIPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YKV + Y+ + ++ + + DK++ I WPL +T + S+ + F + +
Sbjct: 126 EAIFTYKVDNKYAPQAEASILFNDKTLGIDWPLSETQMLLSSKDREGTAFKDAV 179
>gi|304394676|ref|ZP_07376595.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ahrensia sp. R2A130]
gi|303293337|gb|EFL87718.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ahrensia sp. R2A130]
Length = 176
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
MN P+ + ++ R D RG F++++ E GL + Q NHSF+ GT+RG
Sbjct: 1 MNFTPLSLDGLVLIEQRLMSDERGAFARSFCEDTFHEAGLHADYPQHNHSFNTRAGTVRG 60
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
+H+Q P+ + KLV+ + G I D+ VDIR+ S T+G +++E+S + +YIP GFAHG
Sbjct: 61 MHYQHAPHEEVKLVQVLRGAIADVVVDIRKGSETFGQSLTVELSQDEATALYIPAGFAHG 120
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
F TL +T V Y + + + ++G W D + DI WP ++ +S+KD P
Sbjct: 121 FQTLADDTLVTYLMGSRFVPDANTGFRWNDPAFDIFWPREISV---ISDKDLAYP 172
>gi|91200296|emb|CAJ73341.1| strongly similar to dTDP-4-dehydrorhamnose 3,5-epimerase
[Candidatus Kuenenia stuttgartiensis]
Length = 183
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 96/151 (63%), Gaps = 4/151 (2%)
Query: 19 GWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFD 78
G+F++T+ K + GL VQ N S++ GT+RG+HFQ P+ +AKL+ CI G I+D
Sbjct: 24 GFFARTFCRKEFESHGLNPDLVQCNISYNKKKGTLRGMHFQIAPHEEAKLISCIKGSIYD 83
Query: 79 IAVDIRRNSPTYGCWVSLEISAN-NGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEH 137
+ +D+R +SPTYG W + +++A + +Y+P FAHGF TLE +T V Y++++FY E
Sbjct: 84 VIIDMRSDSPTYGQWTAFKLTATVHFTMLYVPESFAHGFQTLEDDTLVFYQMSEFYHPES 143
Query: 138 DSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
G+ W D I WP+ IL S+KD++
Sbjct: 144 ARGIRWDDPMFAIQWPIHSRIL---SDKDKS 171
>gi|170734748|ref|YP_001773862.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia cenocepacia
MC0-3]
gi|169820786|gb|ACA95367.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia cenocepacia
MC0-3]
Length = 193
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 101/171 (59%), Gaps = 5/171 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +++ F D+RG+F +++ + L++ G+ FVQDN S S G +RGLH+QR Q
Sbjct: 12 VLLIEPGVFGDARGFFVESFRASWLRDAGVDATFVQDNQSRSRR-GVLRGLHYQRV-NPQ 69
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV G ++D+AVDIR SP +GCW ++ + ++IP GFAHGF L +
Sbjct: 70 GKLVHAARGAVYDVAVDIRYGSPFFGCWFGAQLDDVSHRMLWIPPGFAHGFCVLSDEADF 129
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILP-SVSEKDQNLPFLNQI 175
YK T +Y + D+GV W D +I I WP D+ P +S+KD+ P L ++
Sbjct: 130 AYKCTQYYDPDSDAGVRWDDPAIGIDWP--DSGAPYQLSDKDRRQPPLAEL 178
>gi|171316144|ref|ZP_02905369.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria MEX-5]
gi|171098748|gb|EDT43542.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria MEX-5]
Length = 190
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 96/169 (56%), Gaps = 5/169 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ-RPPYA 64
V +++ F D+RG+F ++Y L++ G+ FVQDNHS S G +RGLH+Q R P
Sbjct: 12 VLLIEPASFGDARGFFVESYRESWLRDAGVDARFVQDNHSRS-RRGVLRGLHYQFRHP-- 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR G ++D+AVDIR SP G W + + Q++IP GFAHGF L +
Sbjct: 69 QGKLVRVSRGAVYDVAVDIRPGSPHLGHWFGTVLDDVSHRQLWIPPGFAHGFCVLSDEAD 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
YK T +Y D+GV W D I I WP LD +S+KD+ P L
Sbjct: 129 FAYKCTAYYDPSSDAGVLWDDPDIGIEWPALDVPF-ELSDKDRRQPRLR 176
>gi|56751451|ref|YP_172152.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus elongatus PCC
6301]
gi|81298869|ref|YP_399077.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus elongatus PCC
7942]
gi|56686410|dbj|BAD79632.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus elongatus PCC
6301]
gi|81167750|gb|ABB56090.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus elongatus PCC
7942]
Length = 181
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 100/169 (59%), Gaps = 5/169 (2%)
Query: 9 LKTRKFEDSRGWFSQTYSSK--LLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
L ++ F+D RG F + + E Q N S + G IRGLH Q P+++A
Sbjct: 16 LISQPFQDHRGAFLNAFREQEPAFAEAWGDRRIAQVNLSRTDRVGAIRGLHLQAAPHSEA 75
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVRC+ GR++D+AVD+R++S TYG W ++E+S + IP G AHGF LE N+E++
Sbjct: 76 KLVRCLRGRVWDVAVDLRQDSATYGQWQAVELSPEQANALLIPEGCAHGFQVLEANSELL 135
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y + + E ++G+ W D + I WPL + +S++D+ LPFL+ +
Sbjct: 136 YLHSGTWVPEAETGIRWDDPQLAIAWPL---PMSELSDRDRALPFLSGL 181
>gi|153001414|ref|YP_001367095.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS185]
gi|151366032|gb|ABS09032.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS185]
Length = 185
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 99/174 (56%), Gaps = 5/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ + F D RG+F +T+ ++ + G+ FVQDN S S G +RGLHFQ+
Sbjct: 7 KIKDLLIIEPKVFGDDRGFFYETFQNERYRAAGIDVEFVQDNRSRSTK-GVLRGLHFQKT 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLV G +FD+AVD+R S T+G ++ ++ N LQ Y+P GFAHGF L
Sbjct: 66 K-PQGKLVTVTDGEVFDVAVDLRPGSETFGQHETIILTGKNKLQFYVPPGFAHGFCVLSD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK TD+Y +SG+ W D S+ I WPL P +SEKD P L I
Sbjct: 125 TADFQYKCTDYYDPSDESGLLWNDPSLAIQWPLSQ---PLLSEKDAVQPHLAAI 175
>gi|218558919|ref|YP_002391832.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli S88]
gi|160419866|emb|CAN87671.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli S88]
gi|218365688|emb|CAR03424.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli S88]
Length = 180
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 97/162 (59%), Gaps = 5/162 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ + F DSRG+F + + K ++G+ + FVQDN S S +RGLHFQ+ Q K
Sbjct: 13 IIEPKVFGDSRGFFLEAWHQKKYHDIGITEAFVQDNRSRSAR-NVLRGLHFQKN-NPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV I+G +FD+AVD+R S ++G V + +S + QIYIP GFAHGF L + Y
Sbjct: 71 LVSVISGEVFDVAVDLRPGSSSFGKHVGVILSGDKNNQIYIPPGFAHGFCVLSEYADFHY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
K TDFY + G+ W DK ++I WP+ +P +S KD L
Sbjct: 131 KCTDFYDPTDEGGIIWNDKELNIQWPI---DMPIMSSKDNAL 169
>gi|93005456|ref|YP_579893.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Psychrobacter cryohalolentis
K5]
gi|92393134|gb|ABE74409.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Psychrobacter cryohalolentis
K5]
Length = 177
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 102/163 (62%), Gaps = 6/163 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I++ + F D RG+F +T++++ KEL G+ FVQDNHS S G +RGLHFQ+
Sbjct: 11 VLIIEPKIFGDYRGFFKETFNAERYKELAGIDLTFVQDNHSRS-GKGVLRGLHFQKTK-P 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLV G ++D+A DI S TYG +V +E+S +N Q+++P G+AHGF+ + +
Sbjct: 69 QGKLVSVTLGAVYDVAADINPESSTYGEYVGVELSEDNHRQLWVPPGYAHGFLVMSDEVD 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+YK TD+Y + G+AW ++I WP+ D L S+KD+
Sbjct: 129 FVYKCTDYYDPTDEGGIAWNCPLLNIDWPISDVKL---SDKDK 168
>gi|86137091|ref|ZP_01055669.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseobacter sp. MED193]
gi|85826415|gb|EAQ46612.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseobacter sp. MED193]
Length = 182
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 103/180 (57%), Gaps = 8/180 (4%)
Query: 1 MNINPVRILKT-----RKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M I+P+ I K D+RG F++ + ++ E GL + Q N S S GT+RG
Sbjct: 1 MKISPLPIAGAYHIVPEKLGDNRGAFARLFCNERFAEQGLNIEWAQMNLSRSAQKGTLRG 60
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LHFQRPP+++ KLVR + G++FD+ VD+R S TYG + + ++ +YIP G AHG
Sbjct: 61 LHFQRPPFSEVKLVRAVTGKVFDVLVDLREGSKTYGAHCGVILDSDQLEALYIPQGCAHG 120
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F TL + E+ Y + Y+ +H+ G+ + D ++ I WPL T S +D+ LP + I
Sbjct: 121 FQTLTDDVELHYMHSAPYAPDHEGGIRFDDPTLSIRWPLGVT---ETSPRDRALPLFSDI 177
>gi|317492479|ref|ZP_07950907.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316919471|gb|EFV40802.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 173
Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 102/168 (60%), Gaps = 6/168 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQ 59
M + +I++ + F DSRG+F +T+ K +E+ D+ FVQDNHS S +RGLHFQ
Sbjct: 1 MKLLGTKIIRPKVFGDSRGFFLETFEKKRYQEMLEIDLDFVQDNHSRS-SKNVLRGLHFQ 59
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR + G +FD+AVDIR SPT+G W + ++ N Q +IP G AHGF+ L
Sbjct: 60 TS-NPQGKLVRVVRGEVFDVAVDIRPESPTFGQWEGVLLNEENKTQFWIPPGLAHGFVVL 118
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+ YK TD+Y+ +++ + W D + I+WP+ P +SEKD+
Sbjct: 119 SDIADFEYKCTDYYNPANEACLIWNDPDVGISWPV---DCPKLSEKDK 163
>gi|256005064|ref|ZP_05430034.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum DSM
2360]
gi|281418539|ref|ZP_06249558.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum
JW20]
gi|255990915|gb|EEU01027.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum DSM
2360]
gi|281407623|gb|EFB37882.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum
JW20]
gi|316939208|gb|ADU73242.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum DSM
1313]
Length = 182
Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 101/173 (58%), Gaps = 6/173 (3%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKL 68
L R F D+RG F +T+ ++ + GL+ F ++ +S S G +RGLHFQ+PP K+
Sbjct: 16 LIPRIFSDNRGRFVKTFHEEVFAQAGLETNFAEEYYSVSHK-GVLRGLHFQKPPREHTKV 74
Query: 69 VRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128
V C+ G + D+ VD+R SPT G + +++++ IYIP G AHGF +IYK
Sbjct: 75 VYCVHGEVMDVVVDLRVGSPTCGKYDIFDLNSDKANMIYIPKGLAHGFYVKSNQAILIYK 134
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
VT YS E+D+G+ W S+ I WP + P +SE+D+ LP ++ + F Y
Sbjct: 135 VTTVYSPENDTGIRWD--SVGIPWPNDN---PIMSERDRMLPAFEEMQNIFTY 182
>gi|157373249|ref|YP_001471849.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sediminis HAW-EB3]
gi|157315623|gb|ABV34721.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sediminis HAW-EB3]
Length = 190
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 97/172 (56%), Gaps = 10/172 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I ++I++ F D RG+F +++ +E FVQ+NHS S G +RGLH+Q
Sbjct: 8 IADLKIIEPNLFGDERGFFFESFRDSWFREHVSDVHFVQENHSRS-KRGILRGLHYQSSQ 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR I+G +FD+AVD+RR S TYG W +S N Q++IP GFAHGF + +
Sbjct: 67 -TQGKLVRVISGEVFDVAVDLRRESTTYGQWFGTYLSEENRRQLWIPAGFAHGFYVISES 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL--------DTILPSVSEKD 166
+ IYK TD+Y+ E + + W D + + WPL D P +S KD
Sbjct: 126 ADCIYKCTDYYAPEFEKTIIWNDTELSVDWPLSRVNRSKTDDIAQPILSAKD 177
>gi|254250563|ref|ZP_04943882.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Burkholderia
cenocepacia PC184]
gi|124879697|gb|EAY67053.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Burkholderia
cenocepacia PC184]
Length = 192
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 99/171 (57%), Gaps = 5/171 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +++ F D+RG+F +++ + L++ G+ FVQDN S S G +RGLH+QR Q
Sbjct: 12 VLLIEPGVFGDARGFFVESFRASWLRDAGVDATFVQDNQSRSRR-GVLRGLHYQRV-NPQ 69
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV G ++D+AVDIR SP +GCW ++ + ++IP GFAHGF L +
Sbjct: 70 GKLVHAARGAVYDVAVDIRHGSPFFGCWFGAQLDDVSHRMLWIPPGFAHGFCVLSDEADF 129
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILP-SVSEKDQNLPFLNQI 175
YK T +Y + D+GV W D I I WP D P +S+KD+ P L ++
Sbjct: 130 AYKCTQYYDPDSDAGVRWDDPEIGIEWP--DPGAPYQLSDKDRRQPPLAEL 178
>gi|221194744|ref|ZP_03567801.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Atopobium rimae ATCC 49626]
gi|221185648|gb|EEE18038.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Atopobium rimae ATCC 49626]
Length = 207
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 96/180 (53%), Gaps = 8/180 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V + + + D RG+F +TY G+ FVQDN S S G +RGLHFQ
Sbjct: 28 SIEGVMAVDVKTYGDRRGYFMETYRRDNFVAAGIDAEFVQDNQSSS-SQGVLRGLHFQ-I 85
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ QAKLVR I G +FD+AVD+R SPT+G W + +S N Q ++P GFAHGF+ L
Sbjct: 86 AHPQAKLVRVIRGTVFDVAVDLRVGSPTWGKWEGIVLSEENHRQFFVPRGFAHGFLVLSD 145
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL------LDTILPSVSEKDQNLPFLNQI 175
E YK D Y + GV W D I I WP D +S+KD+ P L+ +
Sbjct: 146 EAEFCYKCDDTYHPGDEGGVMWNDPEIGIVWPAFLGEKNFDPARVILSDKDKVHPPLSAL 205
>gi|308272531|emb|CBX29135.1| dTDP-4-dehydrorhamnose 3,5-epimerase [uncultured Desulfobacterium
sp.]
Length = 180
Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 107/180 (59%), Gaps = 10/180 (5%)
Query: 1 MNINP-----VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
MNI P V +++ F D+RG+F++ Y + +G++ FVQDN S S +RG
Sbjct: 1 MNIIPTYLKGVILIEPPVFSDNRGYFTEVYKKSVYDSIGIERNFVQDNLSCS-SKDVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q QAKLV+ I G IFD+AVD+R S T+G W S +S N +++IP FAHG
Sbjct: 60 LHYQVKQ-KQAKLVQVIKGEIFDVAVDLRPYSKTFGKWESFILSDKNNRRVFIPEDFAHG 118
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F L ++YK ++ Y+ + G+ W D +++I WP+ + P VSEKD+ LP +++
Sbjct: 119 FCVLSDTAYLLYKCSEHYAPGDEGGIIWCDGTLNINWPVKN---PIVSEKDRKLPAFSEV 175
>gi|117919840|ref|YP_869032.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sp. ANA-3]
gi|117612172|gb|ABK47626.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sp. ANA-3]
Length = 178
Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 102/170 (60%), Gaps = 8/170 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYS----SKLLKELGLQ-DVFVQDNHSFSFDCGTIRGL 56
+ V + + + F D RG+F +T+ S+ LK GL+ VQDN S S +RGL
Sbjct: 7 ELAEVLVFEPQVFGDERGFFMETFRQSFFSECLKSRGLKVQELVQDNFSRS-QQHVLRGL 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H+QR + Q KLVR AG IFD+AVDIR S TYG WV +SA+N LQ++IP FAHGF
Sbjct: 66 HYQRE-HPQGKLVRVCAGSIFDVAVDIRPQSKTYGKWVGRVLSADNHLQMWIPPSFAHGF 124
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
L +V+Y+ TD+Y+ + + +AW I WPLL+ P +SE+D
Sbjct: 125 YVLSEYADVLYRCTDYYAPDDEYVLAWNSAEFAIDWPLLNET-PILSERD 173
>gi|292669427|ref|ZP_06602853.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas noxia ATCC 43541]
gi|292648880|gb|EFF66852.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas noxia ATCC 43541]
Length = 182
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 99/174 (56%), Gaps = 7/174 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
VRIL +EDSRG F +T+ ++ ++LGL F ++ S S G +RGLHFQ PP
Sbjct: 15 VRILPV-VWEDSRGVFIKTFHVEVFRQLGLPTSFAEEYFSVSRR-GVLRGLHFQTPPMDH 72
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
K+V C G + D VD+RR+SPTYG + + ++ G +YIP G AHGF T +
Sbjct: 73 EKIVCCAEGEVTDAVVDLRRSSPTYGKYALFHLKSSEGTMLYIPKGMAHGFYTRSSTALM 132
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+Y+VT Y+ D+G+ W + I W D P +SE+DQ+ P L SPF
Sbjct: 133 LYQVTSVYAPACDAGIRWD--TAGIPW---DVEHPILSERDQSFPALADFVSPF 181
>gi|59803196|gb|AAX07743.1| dTDP-4-dehydrorhamnose-3,5-epimerase0 [Escherichia coli]
Length = 179
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 98/162 (60%), Gaps = 5/162 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ + F DSRG+F + + + + G++ FVQDN S S +RGLHFQ+ Q K
Sbjct: 13 IIEPKVFGDSRGFFLEAWHKEKYENAGIKGNFVQDNRSRS-SRNVLRGLHFQKTK-PQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV I+G ++D+AVD+R +S T+G +VS+ +S Q+Y+P GFAHGF L + Y
Sbjct: 71 LVSVISGEVYDVAVDLRHDSETFGQYVSVLLSGKKNNQLYVPPGFAHGFCVLSEYADFHY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
K TDFY + + G+ W D I I WP+ + P +SEKD L
Sbjct: 131 KCTDFYDPKDEGGIIWNDPDIAIDWPVTE---PLLSEKDIKL 169
>gi|75674744|ref|YP_317165.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Nitrobacter
winogradskyi Nb-255]
gi|74419614|gb|ABA03813.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrobacter winogradskyi
Nb-255]
Length = 198
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 97/172 (56%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I + R F D RG+F +TY E G+ FVQDN S S G +RGLH Q P Q
Sbjct: 25 VVIFEPRLFGDQRGFFLETYQFPRYAEHGVTRPFVQDNLSRSAR-GVLRGLHLQNP-SPQ 82
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV + G++ D+AVD+R SP +G V++E+S N Q+++P GFAHGF+ L +
Sbjct: 83 GKLVTVLRGKVLDVAVDVRAGSPNFGRHVAVELSEENRRQLWVPRGFAHGFVVLSETADF 142
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
YK D YS +++ + W D +I I W PS+S KD + P L + +
Sbjct: 143 FYKCDDLYSPKNELSIRWNDPTIGIDW---GVETPSLSAKDADAPLLADVKN 191
>gi|225010349|ref|ZP_03700821.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Flavobacteria bacterium
MS024-3C]
gi|225005828|gb|EEG43778.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Flavobacteria bacterium
MS024-3C]
Length = 180
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 14 FEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
F+D+RG F + ++ + GL Q+N S S GTIR LH+Q+ YAQAKLVR +
Sbjct: 19 FKDARGSFFEAFNKAHFYAATGLSFEVAQENQSTSVK-GTIRALHYQKGAYAQAKLVRVL 77
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
AG I D+ VD+R SPTYG ++SA N Q+YIP GFAHGF L V+Y
Sbjct: 78 AGEIIDVVVDLRPGSPTYGIHHRTKLSALNLKQLYIPKGFAHGFSVLTNTATVVYACDAP 137
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y + + G+ + D S++I W L + P +SEKDQ LP L +
Sbjct: 138 YQKDQEGGIYFADPSLNIDWGLGER-RPLLSEKDQALPLLKDV 179
>gi|197103963|ref|YP_002129340.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Phenylobacterium zucineum
HLK1]
gi|196477383|gb|ACG76911.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Phenylobacterium zucineum
HLK1]
Length = 176
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 94/155 (60%), Gaps = 3/155 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++ + + G+ V Q + S + GT+RGLH+Q P+ + KLVR + GR
Sbjct: 21 DERGGFARLHCPEEFAAAGVPFVPAQTSLSRNPHAGTLRGLHYQPAPHGEVKLVRVVRGR 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+R +SPT+ W ++E+ A + IP G AHGF+TLE +T+V+Y++ Y
Sbjct: 81 VFDVAVDLRADSPTHRRWTAVELCAETMTALLIPEGVAHGFLTLEPDTDVLYQIAPAYRP 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
++GV W D + I WP + + +S++D+ P
Sbjct: 141 GREAGVRWDDPAFGIDWPAVPAL---ISDRDRTYP 172
>gi|169884280|gb|ACA97819.1| RfbD [Xylella fastidiosa]
gi|169884282|gb|ACA97820.1| RfbD [Xylella fastidiosa]
gi|169884284|gb|ACA97821.1| RfbD [Xylella fastidiosa]
gi|169884286|gb|ACA97822.1| RfbD [Xylella fastidiosa]
gi|169884288|gb|ACA97823.1| RfbD [Xylella fastidiosa]
gi|169884290|gb|ACA97824.1| RfbD [Xylella fastidiosa]
gi|169884292|gb|ACA97825.1| RfbD [Xylella fastidiosa]
gi|169884294|gb|ACA97826.1| RfbD [Xylella fastidiosa]
gi|169884296|gb|ACA97827.1| RfbD [Xylella fastidiosa]
gi|169884298|gb|ACA97828.1| RfbD [Xylella fastidiosa]
gi|169884300|gb|ACA97829.1| RfbD [Xylella fastidiosa]
gi|169884302|gb|ACA97830.1| RfbD [Xylella fastidiosa]
gi|169884304|gb|ACA97831.1| RfbD [Xylella fastidiosa]
Length = 146
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 89/146 (60%), Gaps = 2/146 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F+D+RG F + ++++ + G+ FVQ N S S G +RGLH+Q P Q KLV +
Sbjct: 2 FDDARGEFFEAWNAECFQRQGMSSRFVQSNVSISM-YGVLRGLHYQWPR-PQGKLVGVLE 59
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G ++D+AVDIRR SP YG WV++ +SA N Q++IP GFAHGF+ L Y TD Y
Sbjct: 60 GEVYDVAVDIRRGSPHYGRWVAVLLSAKNKRQLWIPEGFAHGFVVLSERAVFNYLCTDVY 119
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTIL 159
E D+G+ W D I + WP+ +L
Sbjct: 120 VKEADAGIRWNDAVIGVDWPIAAPLL 145
>gi|294506497|ref|YP_003570555.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Salinibacter ruber
M8]
gi|294342825|emb|CBH23603.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Salinibacter ruber
M8]
Length = 186
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 96/170 (56%), Gaps = 5/170 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
VR+++ + D RG F++ ++ + GL FVQDN S S + G +RGLHFQ P AQ
Sbjct: 11 VRLIEPDVYLDDRGSFAEMWNVRDYGHHGLDVTFVQDNLSRSRE-GVLRGLHFQNP-RAQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KL+ + G ++D+ VD+R S T+G W +SA +G Q+Y P G+AHGF+
Sbjct: 69 GKLISVLEGAVYDVVVDVRTGSDTFGDWEGQVLSAESGRQLYAPEGYAHGFVATSGEVLF 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK TDFY E D V W D ++ I WP D IL S KD P L ++
Sbjct: 129 HYKCTDFYHPEADRTVRWDDPALAIDWPTEDPIL---SAKDAGAPALEEL 175
>gi|156743590|ref|YP_001433719.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseiflexus castenholzii DSM
13941]
gi|156234918|gb|ABU59701.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseiflexus castenholzii DSM
13941]
Length = 193
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 93/162 (57%), Gaps = 1/162 (0%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ F D RG+F ++++S+ G+ FVQDNHS S +RG H+Q K
Sbjct: 15 IIEPVCFRDERGFFLESWNSRDFAARGIAIDFVQDNHSRSVK-NVLRGFHYQDMTAPMVK 73
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVRC G + D+ VD+R SPT+G W ++E++A+N LQ+ +P GF H F+TL E+ Y
Sbjct: 74 LVRCTLGNVLDVIVDLRVGSPTFGRWHAVELTADNMLQLLVPIGFGHAFLTLSDVAEIQY 133
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
K + +Y+ + +AW D I + WP+ D IL K L
Sbjct: 134 KCSIYYTPAAEGVIAWNDPDIGVPWPVTDPILSQRDRKGMRL 175
>gi|325002423|ref|ZP_08123535.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudonocardia sp. P1]
Length = 188
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 104/179 (58%), Gaps = 8/179 (4%)
Query: 1 MNINPV-----RILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M+I+P ++ ++ ED RG+F++ + + + GL Q N S++ + GT+RG
Sbjct: 1 MDIHPTPLPGSALIDLKRLEDDRGFFARAFCEQEFLDAGLDPTITQCNLSYNHEAGTLRG 60
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
H+Q P A+ K++RC+ G IFD+ VD+R +S TY W E+S +N +Y+P FAH
Sbjct: 61 FHYQLEPNAEVKVIRCVRGAIFDVIVDLRPDSDTYLQWFGAELSQDNYKAMYVPRNFAHA 120
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
++TL + IY+V+ Y+ + G+ W D +I + WP+ + +S+KD P +++
Sbjct: 121 YLTLTPDATTIYQVSTPYTPGAERGLRWSDPTIGVEWPVE---VAHISDKDAAWPLVSE 176
>gi|288941651|ref|YP_003443891.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Allochromatium vinosum DSM
180]
gi|288897023|gb|ADC62859.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Allochromatium vinosum DSM
180]
Length = 187
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 103/181 (56%), Gaps = 8/181 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +++ + D RGWF + + ++ L+ + VQ N S + GT+RGLH+Q PP+A+
Sbjct: 15 VVVVERQPIADERGWFERLFCARELESVTHGQPIVQINRSLTHRRGTVRGLHYQHPPHAE 74
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
K+V C+ G IFD+AVD+R SPT+ W +SA +G + IP G AHGF TL + E+
Sbjct: 75 TKIVTCLRGEIFDVAVDLRAGSPTFLHWHGERLSAADGRMLVIPEGCAHGFQTLSDDAEL 134
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLP 185
Y T Y +SG+ +D +D+ WP T L S +D+ P L+ +++GL
Sbjct: 135 FYLNTAEYVPASESGLHPEDPRLDVRWPGPITQL---SSRDRGHPPLDP-----QFEGLS 186
Query: 186 L 186
L
Sbjct: 187 L 187
>gi|120400390|gb|ABM21444.1| sugar biosynthesis protein [Lactobacillus johnsonii]
Length = 171
Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 83/139 (59%), Gaps = 2/139 (1%)
Query: 23 QTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVD 82
+T++ + + + G FVQDN S S G +RGLHFQ+ Y Q KLVR + G +FD+AVD
Sbjct: 2 ETFNQRDMMDAGFSINFVQDNQSSS-TKGVLRGLHFQKK-YPQIKLVRAVRGSVFDVAVD 59
Query: 83 IRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVA 142
+R +S TYG W +E++A N Q IP GFAHGF+ L E YKV DF+ + G+A
Sbjct: 60 LRSDSKTYGKWYGVELTAENKKQFLIPQGFAHGFLVLSDEAEFCYKVNDFWHPNDEGGMA 119
Query: 143 WQDKSIDITWPLLDTILPS 161
W D I I WP L P
Sbjct: 120 WNDPEIGIEWPHLKGDYPG 138
>gi|294665241|ref|ZP_06730538.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292604992|gb|EFF48346.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 185
Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 94/168 (55%), Gaps = 5/168 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ R F D RG F + ++++ + G F+Q N S S G +RGLH+Q P Q K
Sbjct: 13 VVEPRVFGDERGQFFEAWNAERFDQHGFSARFLQSNISTSTK-GVLRGLHYQWP-RPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G ++D+AVDIRR SP +G W + +SA N Q +IP GFAHGF L Y
Sbjct: 71 LVSVLEGEVYDVAVDIRRGSPYFGQWTAAILSAENNRQFWIPEGFAHGFAVLSERAVFSY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
TD Y + D+ V W D +I + WP+ IL S KD+ PFL I
Sbjct: 131 LCTDIYVHDADASVRWDDATIGVDWPISSPIL---SAKDRAAPFLEDI 175
>gi|294624435|ref|ZP_06703123.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292601258|gb|EFF45307.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 185
Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 94/168 (55%), Gaps = 5/168 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ R F D RG F + ++++ + G F+Q N S S G +RGLH+Q P Q K
Sbjct: 13 VVEPRVFGDERGQFFEAWNAERFDQHGFSARFLQSNISTSTK-GVLRGLHYQWP-RPQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G ++D+AVDIRR SP +G W + +SA N Q +IP GFAHGF L Y
Sbjct: 71 LVSVLEGEVYDVAVDIRRGSPYFGQWTAAILSAENNRQFWIPEGFAHGFAVLSERAVFSY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
TD Y + D+ V W D +I + WP+ IL S KD+ PFL I
Sbjct: 131 LCTDIYVHDADASVRWDDATIGVDWPISSPIL---SAKDRAAPFLEDI 175
>gi|237713247|ref|ZP_04543728.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D1]
gi|262406613|ref|ZP_06083162.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_22]
gi|294646163|ref|ZP_06723819.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides ovatus SD CC 2a]
gi|294807867|ref|ZP_06766649.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides xylanisolvens SD
CC 1b]
gi|299145719|ref|ZP_07038787.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_1_23]
gi|229446714|gb|EEO52505.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D1]
gi|262355316|gb|EEZ04407.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_22]
gi|292638492|gb|EFF56854.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides ovatus SD CC 2a]
gi|294444929|gb|EFG13614.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides xylanisolvens SD
CC 1b]
gi|298516210|gb|EFI40091.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_1_23]
Length = 182
Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 104/168 (61%), Gaps = 4/168 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ V +++ + F D RG+F + Y + +G D F+QDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPKVFSDERGYFMEAYKKEEFDANIGPVD-FIQDNESKS-SFGVLRGLHYQK 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Y+QAKLVR + G++ D+AVD+R++SPT+G V + +S N Q +IP GFAHGF L
Sbjct: 65 GEYSQAKLVRVLKGKVLDVAVDLRKSSPTFGKHVCVLLSEENKRQFFIPRGFAHGFAVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YKV + Y+ + ++ + + D+++ I WPL D+ + +S KD+
Sbjct: 125 EEAVFTYKVDNKYAPQAEASILYNDETLGIDWPLADSQM-VLSAKDRE 171
>gi|188580041|ref|YP_001923486.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium populi
BJ001]
gi|179343539|gb|ACB78951.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium populi
BJ001]
Length = 177
Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 91/155 (58%), Gaps = 3/155 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F++T+ + GL F Q + SF+ GT+RG+HF R P+A+ KLVRC AG
Sbjct: 21 DERGFFARTHCEETFTARGLVGRFAQSSVSFNHRRGTVRGMHFSRAPHAETKLVRCTAGA 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
I D +D+R +SPTY ++ +SA N +YIP G AHGF TL + E++Y + +
Sbjct: 81 IHDAVIDLRPDSPTYRRTAAVRLSAANRHALYIPAGLAHGFQTLSDDAEILYMIDLPFVA 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
GV W D + +TWP ++ +S++D+ P
Sbjct: 141 SAADGVRWDDPAFALTWPEPVSV---ISDRDRAFP 172
>gi|118595001|ref|ZP_01552348.1| CDP-4-dehydro-6-deoxy-D-glucose 3-epimerase [Methylophilales
bacterium HTCC2181]
gi|118440779|gb|EAV47406.1| CDP-4-dehydro-6-deoxy-D-glucose 3-epimerase [Methylophilales
bacterium HTCC2181]
Length = 187
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 100/175 (57%), Gaps = 6/175 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
++I++ R DSRG+ S+ Y +K G Q N + ++ GT+RGLH+Q P+ +
Sbjct: 15 LKIVQRRTVNDSRGFLSRVYCAKEFAGHGFNKSVSQINQTLTYQKGTVRGLHYQLMPHTE 74
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV C+ G IFD+AVD+R+ SPT+ W S +S N + IP GFAHGF +L N E+
Sbjct: 75 IKLVSCVKGEIFDVAVDLRKGSPTFLHWHSEMLSEKNQRSMLIPEGFAHGFQSLTDNCEL 134
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+Y + Y ++ + D + IT+PL T +SE+D+ P ID+ FE
Sbjct: 135 LYLHSKPYEKGSEAALNMNDSRLAITFPLSIT---DISERDRAHPM---IDNNFE 183
>gi|225873478|ref|YP_002754937.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidobacterium capsulatum
ATCC 51196]
gi|225794039|gb|ACO34129.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidobacterium capsulatum
ATCC 51196]
Length = 181
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 101/174 (58%), Gaps = 12/174 (6%)
Query: 1 MNINP-----VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M I P V +++ R F D RG F +T++ + + E GL + QDN S S +RG
Sbjct: 1 MEITPTALPEVLVIRPRIFRDDRGSFWETWNERTIAEAGLPAEWKQDNTSVS-KKNVVRG 59
Query: 56 LHFQ--RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFA 113
+H+Q +P Q KLVR AGRI D+AVD+RR+SP +G +++E+S ++ ++IP GF
Sbjct: 60 IHYQILQP---QGKLVRAAAGRILDVAVDLRRSSPNFGKHIAVELSGDDSAMLWIPVGFG 116
Query: 114 HGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKD 166
H F+ L + V YKVTD+YS + + W D I I WP+ D + S + D
Sbjct: 117 HAFVALTDDARVAYKVTDYYSPAGERTILWNDPQIGIDWPVRADEAIVSAKDAD 170
>gi|145590610|ref|YP_001152612.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pyrobaculum arsenaticum DSM
13514]
gi|145282378|gb|ABP49960.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pyrobaculum arsenaticum DSM
13514]
Length = 165
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 96/168 (57%), Gaps = 6/168 (3%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F D+RG+F++ + GL FVQ N SFS +RGLH+Q P Q KLV +
Sbjct: 2 FPDARGFFAELWKRGEYLAAGLPYDFVQANLSFSKQY-VVRGLHYQLKPSEQGKLVTVVK 60
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
GR+ D+AVDIRR SP YG +V++E+ G+ ++IP GFAHGF LE T +Y VT Y
Sbjct: 61 GRVLDVAVDIRRGSPWYGRYVAVELEP--GVALWIPPGFAHGFQALE-ETLFLYLVTKEY 117
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ + + W D I I WP D + +SEKD P L + + FEY
Sbjct: 118 DQQRERCIGWDDPEIGIRWPAHDKAI--LSEKDAKCPPLKEAEDNFEY 163
>gi|170743095|ref|YP_001771750.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium sp. 4-46]
gi|168197369|gb|ACA19316.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium sp. 4-46]
Length = 205
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 105/175 (60%), Gaps = 3/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+++ V I+ D RG F++ + ++ L E GL Q + S++ GT+RG+HF+ P
Sbjct: 7 DLSGVYIVDIDPRRDERGHFARIFCTQELAERGLIHHIPQISLSYNIKRGTLRGMHFKYP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY++ K VRC+ GRIFD+ VD+R S TY + E+SA NG +YIP AHGF+TLE
Sbjct: 67 PYSETKYVRCVRGRIFDVVVDLRPESRTYLGHLCAELSAENGRCLYIPERCAHGFITLED 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
++EV+Y ++ ++ + + G+ D + I WP+ + +S +D P L +++
Sbjct: 127 DSEVMYMISAPHAPDGEGGLVHDDPRLAIPWPIPVEV---ISRRDAEWPALAEVE 178
>gi|300313694|ref|YP_003777786.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Herbaspirillum seropedicae
SmR1]
gi|226726337|gb|ACO81758.1| RfbC [Herbaspirillum seropedicae SmR1]
gi|300076479|gb|ADJ65878.1| dTDP-6-deoxy-D-glucose-3,5 epimerase protein [Herbaspirillum
seropedicae SmR1]
Length = 181
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 102/174 (58%), Gaps = 9/174 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ--RPP 62
V +L+ FED+RG F + ++++ K L GL FVQDN S S G +RGLH+Q +P
Sbjct: 11 VLVLEPTVFEDARGHFFEAFNARQFKALTGLSPEFVQDNQSHS-KAGVLRGLHYQLHQP- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR I G I D+ VD+RR SP++G W S+ +SA N Q++IP GFAHGF
Sbjct: 69 --QGKLVRVIQGEITDVVVDLRRQSPSFGQWASVTLSAQNRRQLWIPEGFAHGFHVRSDI 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+V YK T ++S + + W D + I W L T P +S+KD+ + Q +
Sbjct: 127 ADVQYKTTAYWSAPDERCIRWDDPDLAIDWQL--TAPPLLSDKDRQGVYWRQAE 178
>gi|169884214|gb|ACA97786.1| RfbD [Xylella fastidiosa]
gi|169884216|gb|ACA97787.1| RfbD [Xylella fastidiosa]
gi|169884218|gb|ACA97788.1| RfbD [Xylella fastidiosa]
gi|169884220|gb|ACA97789.1| RfbD [Xylella fastidiosa]
gi|169884222|gb|ACA97790.1| RfbD [Xylella fastidiosa]
gi|169884224|gb|ACA97791.1| RfbD [Xylella fastidiosa]
gi|169884226|gb|ACA97792.1| RfbD [Xylella fastidiosa]
gi|169884228|gb|ACA97793.1| RfbD [Xylella fastidiosa]
gi|169884230|gb|ACA97794.1| RfbD [Xylella fastidiosa]
gi|169884232|gb|ACA97795.1| RfbD [Xylella fastidiosa]
gi|169884234|gb|ACA97796.1| RfbD [Xylella fastidiosa]
gi|169884236|gb|ACA97797.1| RfbD [Xylella fastidiosa]
gi|169884238|gb|ACA97798.1| RfbD [Xylella fastidiosa]
gi|169884240|gb|ACA97799.1| RfbD [Xylella fastidiosa]
gi|169884242|gb|ACA97800.1| RfbD [Xylella fastidiosa]
gi|169884244|gb|ACA97801.1| RfbD [Xylella fastidiosa]
gi|169884246|gb|ACA97802.1| RfbD [Xylella fastidiosa]
gi|169884248|gb|ACA97803.1| RfbD [Xylella fastidiosa]
gi|169884250|gb|ACA97804.1| RfbD [Xylella fastidiosa]
gi|169884252|gb|ACA97805.1| RfbD [Xylella fastidiosa]
gi|169884254|gb|ACA97806.1| RfbD [Xylella fastidiosa]
gi|169884256|gb|ACA97807.1| RfbD [Xylella fastidiosa]
gi|169884258|gb|ACA97808.1| RfbD [Xylella fastidiosa]
gi|169884260|gb|ACA97809.1| RfbD [Xylella fastidiosa]
gi|169884262|gb|ACA97810.1| RfbD [Xylella fastidiosa]
gi|169884264|gb|ACA97811.1| RfbD [Xylella fastidiosa]
gi|169884266|gb|ACA97812.1| RfbD [Xylella fastidiosa]
gi|169884268|gb|ACA97813.1| RfbD [Xylella fastidiosa]
Length = 146
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 89/146 (60%), Gaps = 2/146 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F+D+RG F + ++++ + G+ FVQ N S S G +RGLH+Q P Q KLV +
Sbjct: 2 FDDARGEFFEAWNAECFQRQGMSSRFVQSNVSISM-YGVLRGLHYQWPR-PQGKLVGVLE 59
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G ++D+AVDIRR SP YG WV++ +SA N Q++IP GFAHGF+ L Y TD Y
Sbjct: 60 GEVYDVAVDIRRGSPHYGRWVAVLLSAKNKRQLWIPEGFAHGFVVLSERAVFNYLCTDVY 119
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTIL 159
E D+G+ W D I + WP+ +L
Sbjct: 120 VKEADAGIRWNDALIGVDWPIAVPLL 145
>gi|224826608|ref|ZP_03699709.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lutiella nitroferrum 2002]
gi|224601209|gb|EEG07391.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lutiella nitroferrum 2002]
Length = 180
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 104/171 (60%), Gaps = 6/171 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+N + +L+ F D RG F +T++++ L G + FVQDN S S +RGLH+Q
Sbjct: 8 LNGLLLLEPVVFADERGEFCETFNARRFAALIGREVCFVQDNRSCSRP-NVLRGLHYQHA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLV+ G ++D+AVD+RR SP++G W + +SA N Q++IP GFAHGF+ L+
Sbjct: 67 -HPQGKLVQVTQGAVWDVAVDLRRASPSFGQWYGVTLSAENRRQLWIPEGFAHGFLALQD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD-QNLPF 171
E YKV+D++ + + W D ++ I WPL T P +S+KD Q L F
Sbjct: 126 GAEFCYKVSDYWHAGDEYCIRWDDPALGIDWPL--TQPPVLSDKDRQGLSF 174
>gi|257440395|ref|ZP_05616150.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Faecalibacterium prausnitzii
A2-165]
gi|257197144|gb|EEU95428.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Faecalibacterium prausnitzii
A2-165]
Length = 188
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 96/179 (53%), Gaps = 2/179 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +++ + F D RG+F +TY G+ FVQDN S S G +RGLHFQ+
Sbjct: 10 EIPGVVVIEPQVFGDDRGYFMETYQKDQFAAAGIDKEFVQDNQSRSTR-GVLRGLHFQKN 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G ++D+AVD R +S T+G WV + +S N YIP GFAHGF+ L
Sbjct: 69 -HTQGKLVRVTKGEVYDVAVDCRPHSATFGKWVGVTLSEENKKMFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
E YK TD Y + G+ + D ++++ WP + ++ + PF Q FE
Sbjct: 128 VAEFCYKCTDVYDPTSEGGIPYDDPTVNVQWPDCGCEHKTSAKDKLHEPFAAQKFEFFE 186
>gi|237745879|ref|ZP_04576359.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oxalobacter formigenes
HOxBLS]
gi|229377230|gb|EEO27321.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oxalobacter formigenes
HOxBLS]
Length = 189
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 96/168 (57%), Gaps = 2/168 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V I++ + F D RG+F ++Y+ K+ GL VFVQDN S S GTIRG+HFQ
Sbjct: 8 LEGVYIIEPKVFSDPRGYFFESYNQDKFKKAGLDYVFVQDNQSKS-SYGTIRGIHFQTGK 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLV + G + DIAVD+R SPT+G V++E+S N Q+ IP GF HGF L
Sbjct: 67 HAQTKLVWVLQGTVLDIAVDLRVGSPTFGQHVAVELSGENYRQLLIPRGFGHGFSVLSET 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
YK +FY + V + D + I W +D +SEKD+ P
Sbjct: 127 AVFSYKCDNFYMPSSEGSVRFDDPDLAIDW-RVDRKRALLSEKDKTAP 173
>gi|163754602|ref|ZP_02161724.1| putative LPS biosynthesis related dTDP-4-dehydrorhamnose
3,5-epimerase [Kordia algicida OT-1]
gi|161325543|gb|EDP96870.1| putative LPS biosynthesis related dTDP-4-dehydrorhamnose
3,5-epimerase [Kordia algicida OT-1]
Length = 177
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 106/170 (62%), Gaps = 9/170 (5%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+++ + F D+RG F ++Y+ + DV FVQDN S S G +RGLHFQ +AQA
Sbjct: 13 VIEPQVFGDARGSFMESYNEQKFPA----DVHFVQDNQSVS-QKGVLRGLHFQTGEHAQA 67
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVR I G + D+AVD+R NS T+G S+ ++A N Q+++P GFAHGF L+ +T
Sbjct: 68 KLVRVIRGEVLDVAVDVRPNSETFGQHFSIILNAENNKQLFVPRGFAHGFAVLQDDTIFA 127
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQI 175
YK +FY+ + +SG+ + D I I W L D I+ +S+KD+ LP L +
Sbjct: 128 YKCDNFYNKDAESGIIYNDPEIAIDWMLNEDEII--LSDKDKLLPNLKSL 175
>gi|48590|emb|CAA79352.1| WbbV [Yersinia enterocolitica]
gi|318605010|emb|CBY26508.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Yersinia enterocolitica
subsp. palearctica Y11]
Length = 187
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 97/155 (62%), Gaps = 7/155 (4%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I V + + R FED RG F ++++ +K + +G Q FVQ N S+S IRGLH+Q
Sbjct: 6 LSIPEVILFEPRIFEDDRGHFFESFNLAKFQESIGRQVTFVQSNESYS-KQNVIRGLHYQ 64
Query: 60 --RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
RP Q KLVR + G +FDIAVD+R++SPT+G WV + +S N Q++IP GF HGF
Sbjct: 65 VIRP---QGKLVRVVEGEVFDIAVDLRKSSPTFGQWVGVLLSDKNNHQLWIPEGFGHGFQ 121
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITW 152
L + + Y VTD++ EHD + + D I+I W
Sbjct: 122 VLSPSAKFQYMVTDYWYPEHDRCIRFNDSDINIKW 156
>gi|159042035|ref|YP_001541287.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caldivirga maquilingensis
IC-167]
gi|157920870|gb|ABW02297.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caldivirga maquilingensis
IC-167]
Length = 188
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 104/181 (57%), Gaps = 3/181 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +++ ++F D RG+F++ + G+ F Q + S S G +RGLH+Q
Sbjct: 9 LEIPDVILIEYQRFPDHRGFFAELWKRTDFLANGVFYDFTQLSTSVS-RRGVVRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLV + GR+ D+AVD+R+ SP +G V++E+S N +++P GFAHGF LE
Sbjct: 68 KPMEQGKLVTVLRGRVIDVAVDVRKGSPWFGKHVAVELSTNEPRLLWVPPGFAHGFQALE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T +Y +T YS +H+ V W D + I WP+ ++ +SEKD P L ++ F
Sbjct: 128 DDTVFLYLMTKEYSPQHERCVKWDDPELGIEWPIRSNVI--ISEKDSKCPPLKAAETNFN 185
Query: 181 Y 181
Y
Sbjct: 186 Y 186
>gi|115358135|ref|YP_775273.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria AMMD]
gi|115283423|gb|ABI88939.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria AMMD]
Length = 193
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 3/170 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +++ F D+RG+F +++ L++ G+ FVQDN S S G +RGLH+QR Q
Sbjct: 12 VLVIEPGVFGDARGFFVESFRESWLRDAGVDATFVQDNQSRS-RRGVLRGLHYQRV-NPQ 69
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV G ++D+AVDIRR SP++G W ++ + ++IP GFAHGF L +
Sbjct: 70 GKLVHAARGTVYDVAVDIRRGSPSFGRWFGAQLDDISHRMLWIPPGFAHGFCVLSDEADF 129
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK T +Y + D+GV W D +I I WP +S+KD+ P L ++
Sbjct: 130 AYKCTQYYDPDSDAGVRWDDPAIGIDWPASGAPY-QLSDKDRRQPPLAEL 178
>gi|169884270|gb|ACA97814.1| RfbD [Xylella fastidiosa]
gi|169884272|gb|ACA97815.1| RfbD [Xylella fastidiosa]
gi|169884274|gb|ACA97816.1| RfbD [Xylella fastidiosa]
gi|169884276|gb|ACA97817.1| RfbD [Xylella fastidiosa]
gi|169884278|gb|ACA97818.1| RfbD [Xylella fastidiosa]
Length = 146
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 89/146 (60%), Gaps = 2/146 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F+D+RG F + ++++ + G+ FVQ N S S G +RGLH+Q P Q KLV +
Sbjct: 2 FDDARGEFFEAWNAECFERQGMSSRFVQSNVSISM-YGVLRGLHYQWPR-PQGKLVGVLE 59
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G ++D+AVDIRR SP YG WV++ +SA N Q++IP GFAHGF+ L Y TD Y
Sbjct: 60 GEVYDVAVDIRRGSPHYGRWVAVLLSAKNKRQLWIPEGFAHGFVVLSERAVFNYLCTDVY 119
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTIL 159
E D+G+ W D I + WP+ +L
Sbjct: 120 VKEADAGIRWNDALIGVDWPIAVPLL 145
>gi|298484051|ref|ZP_07002220.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D22]
gi|295084261|emb|CBK65784.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides xylanisolvens
XB1A]
gi|298269832|gb|EFI11424.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D22]
Length = 182
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 104/168 (61%), Gaps = 4/168 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ V +++ + F D RG+F + Y + +G D F+QDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPKVFSDERGYFMEAYKKEEFDANIGPVD-FIQDNESKS-SFGVLRGLHYQK 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Y+QAKLVR + G++ D+AVD+R++SPT+G + + +S N Q +IP GFAHGF L
Sbjct: 65 GEYSQAKLVRVLKGKVLDVAVDLRKSSPTFGKHICVLLSEENKRQFFIPRGFAHGFAVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YKV + Y+ + ++ + + D+++ I WPL D+ + +S KD+
Sbjct: 125 EEAVFTYKVDNKYAPQAEASILYNDETLGIDWPLADSQM-VLSAKDRE 171
>gi|331677945|ref|ZP_08378620.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli H591]
gi|331074405|gb|EGI45725.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli H591]
Length = 186
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 93/168 (55%), Gaps = 5/168 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ + F D RG+F + Y K +ELG FVQDN S S +RGLHFQ+ Q K
Sbjct: 13 IIEPKIFGDERGYFFEVYQKKRYQELGFALEFVQDNRSKSTK-NVLRGLHFQKTK-PQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV G +FD+AVD+R S T+G S+ +S N LQ YIP GFAHGF L Y
Sbjct: 71 LVSVTQGAVFDVAVDLRPESLTFGQHHSVILSEENFLQFYIPPGFAHGFCVLSDTASFQY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
K TD+Y +SG+ W D + I WP+ P VS KD LP L I
Sbjct: 131 KCTDYYDPTDESGLIWNDPDLGIEWPVSH---PVVSAKDCFLPSLASI 175
>gi|62511683|gb|AAX84430.1| RfbD [Xylella fastidiosa]
gi|62511685|gb|AAX84431.1| RfbD [Xylella fastidiosa]
gi|62511687|gb|AAX84432.1| RfbD [Xylella fastidiosa]
gi|62511689|gb|AAX84433.1| RfbD [Xylella fastidiosa]
gi|62511691|gb|AAX84434.1| RfbD [Xylella fastidiosa]
gi|62511693|gb|AAX84435.1| RfbD [Xylella fastidiosa]
Length = 143
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 87/141 (61%), Gaps = 2/141 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F+D+RG F + ++++ + G+ FVQ N S S G +RGLH+Q P Q KLV +
Sbjct: 1 FDDARGEFFEAWNAECFERQGMSSRFVQSNVSISM-YGVLRGLHYQWPR-PQGKLVGVLE 58
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G ++D+AVDIRR SP YG WV++ +SA N Q++IP GFAHGF+ L Y TD Y
Sbjct: 59 GEVYDVAVDIRRGSPHYGRWVAVLLSAKNKRQLWIPEGFAHGFVVLSERAVFNYLCTDVY 118
Query: 134 SVEHDSGVAWQDKSIDITWPL 154
E D+G+ W D I + WP+
Sbjct: 119 VKEADAGIRWNDAVIGVDWPI 139
>gi|116250011|ref|YP_765849.1| dTDP-4-dehydrorhamnose 3,5-epimerase protein [Rhizobium
leguminosarum bv. viciae 3841]
gi|115254659|emb|CAK05733.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 167
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 94/159 (59%), Gaps = 3/159 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++T+ ++ GL V+ Q N S + GT+RG+H+Q P + KLVR GR
Sbjct: 8 DDRGMFARTFDAQTFAAQGLVPVYPQCNVSQNHKRGTLRGMHYQAEPRPEIKLVRATRGR 67
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+A+D+R +SP+Y W S+E+ A YIP G AHGF+TLE + E+ Y++++ Y
Sbjct: 68 VFDVALDLRPDSPSYLKWASVELDAIRHNAFYIPAGCAHGFLTLEDDCELYYQMSETYVP 127
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E GV W D + I WP +I ++E+D L Q
Sbjct: 128 ELARGVRWDDPAFSIAWPFTPSI---INERDAALDSYGQ 163
>gi|158425101|ref|YP_001526393.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Azorhizobium caulinodans ORS
571]
gi|158331990|dbj|BAF89475.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Azorhizobium caulinodans ORS
571]
Length = 176
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%)
Query: 1 MNINPVRILKTRKFE-----DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M I+P +I + E D RG F++T+ ++ GL D + N S++ GT+RG
Sbjct: 1 MKISPTKIPGVMEVEITPLTDERGLFARTFCAETFAGHGLADRYPHQNTSYNPRRGTLRG 60
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH Q P +AKLVR GR+FD+AVD+R +SP Y W ++E+ A+ +YIP G AHG
Sbjct: 61 LHLQAEPSPEAKLVRATRGRVFDVAVDLRPSSPAYRAWTAVELDADRRNALYIPAGCAHG 120
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL 159
F+TL+ ++EV Y +++ Y W D + + WP +++
Sbjct: 121 FLTLDDDSEVFYLMSETYVPALARTYRWNDPAFGVDWPFEPSVI 164
>gi|123968939|ref|YP_001009797.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prochlorococcus marinus str.
AS9601]
gi|123199049|gb|ABM70690.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prochlorococcus marinus str.
AS9601]
Length = 178
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 103/175 (58%), Gaps = 5/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTY--SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I+ V ++T F D RG F + S K K Q N S + GT+RGLH+Q
Sbjct: 6 SIDGVFEIQTDIFNDQRGSFINFFRSSEKAFKNCWFDKEIKQVNLSKNSFKGTLRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
PYA+ K+VRCI G ++D+AVD+R +S TY W +E+S I IP G AHGF L
Sbjct: 66 LNPYAEKKMVRCIKGCVWDVAVDLREDSSTYLSWHCVELSPKFANAIVIPEGCAHGFQVL 125
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E ++E++Y + + E ++G+ W D I I+WPL ++SE+DQNLP+L++
Sbjct: 126 EEDSEILYLHSGDWIKESETGIRWNDPQIAISWPLQAV---NLSERDQNLPYLSE 177
>gi|170702909|ref|ZP_02893751.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria
IOP40-10]
gi|170132189|gb|EDT00675.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria
IOP40-10]
Length = 193
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 3/170 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +++ F D+RG+F +++ L++ G+ FVQDN S S G +RGLH+QR Q
Sbjct: 12 VLVIEPGVFGDARGFFVESFRESWLRDAGVDATFVQDNQSRS-RRGVLRGLHYQRV-NPQ 69
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV G ++D+AVDIRR SP++G W ++ + +++P GFAHGF L +
Sbjct: 70 GKLVHAARGTVYDVAVDIRRGSPSFGRWFGAQLDDISHRMLWVPPGFAHGFCVLSDEADF 129
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK T +Y + D+GV W D +I I WP +S+KD+ P L ++
Sbjct: 130 AYKCTQYYDPDSDAGVRWDDPAIGIDWPASGAPY-QLSDKDRRQPPLAEL 178
>gi|92116639|ref|YP_576368.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrobacter hamburgensis X14]
gi|91799533|gb|ABE61908.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrobacter hamburgensis X14]
Length = 184
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 95/170 (55%), Gaps = 5/170 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I++ R F D RG+F +TY E G+ F+QDN S S G +RGLH Q P Q
Sbjct: 11 VIIIEPRLFGDQRGFFLETYQFHRYAEYGVSRPFIQDNLSRS-ARGVLRGLHLQNP-LTQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV + G++ D+AVD+R SP +G V++E+S N Q+++P GFAHGF+ L +
Sbjct: 69 GKLVTALRGKVLDVAVDVRVGSPNFGRHVAVELSEENRRQLWVPRGFAHGFVVLSETADF 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK D YS + + + W D +I I W L P +S KD P L +
Sbjct: 129 FYKCDDLYSPKDELSIRWDDPAIGIDWGLE---TPFLSAKDAGAPLLADV 175
>gi|227822978|ref|YP_002826950.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium fredii NGR234]
gi|227341979|gb|ACP26197.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium fredii NGR234]
Length = 177
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 94/165 (56%), Gaps = 3/165 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ ++ D RG+FS+ + L++ G Q NH+ + G IRG+HFQRPP+ + K
Sbjct: 16 VIERKRAGDERGFFSRFFCRDELRDFGGDGSIAQINHTLTRIKGAIRGMHFQRPPHDETK 75
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
V C++G +FD+AVDIR +SPTY W +SA N + IP GFAHGF TL E+IY
Sbjct: 76 FVSCLSGAVFDVAVDIRPDSPTYLQWHGEILSAENARSMMIPGGFAHGFQTLAEECELIY 135
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
Y+ + G+ D + I WPL T +SE+D+ L
Sbjct: 136 LHDKPYAPGAEGGLNPLDPRLGIKWPLEVT---QMSERDRAFGLL 177
>gi|62511665|gb|AAX84421.1| RfbD [Xylella fastidiosa]
gi|62511667|gb|AAX84422.1| RfbD [Xylella fastidiosa]
gi|62511669|gb|AAX84423.1| RfbD [Xylella fastidiosa]
gi|62511671|gb|AAX84424.1| RfbD [Xylella fastidiosa]
gi|62511673|gb|AAX84425.1| RfbD [Xylella fastidiosa]
gi|62511675|gb|AAX84426.1| RfbD [Xylella fastidiosa]
gi|62511677|gb|AAX84427.1| RfbD [Xylella fastidiosa]
gi|62511679|gb|AAX84428.1| RfbD [Xylella fastidiosa]
gi|62511681|gb|AAX84429.1| RfbD [Xylella fastidiosa]
Length = 143
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 87/141 (61%), Gaps = 2/141 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F+D+RG F + ++++ + G+ FVQ N S S G +RGLH+Q P Q KLV +
Sbjct: 1 FDDARGEFFEVWNAECFEHQGMSSRFVQSNVSISI-YGVLRGLHYQWPR-PQGKLVGVLE 58
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G ++D+AVDIRR SP YG WV++ +SA N Q++IP GFAHGF+ L Y TD Y
Sbjct: 59 GEVYDVAVDIRRGSPHYGRWVAVLLSAKNKRQLWIPEGFAHGFVVLSERAVFNYLCTDVY 118
Query: 134 SVEHDSGVAWQDKSIDITWPL 154
E D+G+ W D I + WP+
Sbjct: 119 VKEADAGIRWNDAVIGVDWPI 139
>gi|158335345|ref|YP_001516517.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acaryochloris marina
MBIC11017]
gi|158305586|gb|ABW27203.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acaryochloris marina
MBIC11017]
Length = 185
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 100/187 (53%), Gaps = 11/187 (5%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M ++P +I L+ F+D RG F +T+ ++ L+ F + +S+S +RG
Sbjct: 1 MQLHPTKIPGCFELELNVFKDQRGRFVKTFHEEIFASHQLETHFPEAYYSYSTQ-NVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LHFQ PP K+V C G I D VD+R SPTYG + E+SA G YIP G AHG
Sbjct: 60 LHFQIPPKDHTKMVHCAQGEIVDAVVDLRVGSPTYGQFEVFELSAEKGNSAYIPPGLAHG 119
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F + V+Y+V+ Y+ H+ G+ W S +I WP + P +SEKDQ L
Sbjct: 120 FYIVSETALVMYQVSTVYAPGHEQGLLW--NSAEIPWPSTN---PIISEKDQGWKTLADY 174
Query: 176 DSPFEYD 182
+SPF Y+
Sbjct: 175 ESPFVYE 181
>gi|119720615|ref|YP_921110.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermofilum pendens Hrk 5]
gi|119525735|gb|ABL79107.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermofilum pendens Hrk 5]
Length = 190
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 104/181 (57%), Gaps = 6/181 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +++ F D RG+F++ Y G+ FVQ N SFS G +R LH+Q
Sbjct: 14 LEIPDVVLVEYAVFPDERGFFAELYKRTEFLSGGVPYGFVQVNLSFS-RAGVVRALHYQL 72
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLV ++GR+FD+AVDIRR SP +G VS+ + G +++P GFAHGF LE
Sbjct: 73 KPMEQGKLVYVVSGRVFDVAVDIRRGSPWFGRHVSVVL--EPGFALWVPPGFAHGFQALE 130
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
++ +Y VT YS +H+ + W+D + I WP ++ + VS +D P + ++ FE
Sbjct: 131 -DSFFLYFVTKEYSPQHERCIFWRDPDLGIRWPRVEGAV--VSGRDSRCPLFREAETNFE 187
Query: 181 Y 181
Y
Sbjct: 188 Y 188
>gi|285019455|ref|YP_003377166.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Xanthomonas albilineans GPE
PC73]
gi|283474673|emb|CBA17172.1| probable dtdp-4-dehydrorhamnose 3,5-epimerase protein [Xanthomonas
albilineans]
Length = 185
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 93/162 (57%), Gaps = 5/162 (3%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F D+RG+F + ++++ + GL FVQ N S S G +RGLH+Q P Q KLV +
Sbjct: 19 FGDARGYFFEAWNAERFGQHGLPTHFVQSNVSTSAK-GVLRGLHYQWP-RPQGKLVSVLE 76
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G ++D+AVDIRR SP +G WV+ +S N Q +IP GFAHGF L Y TD Y
Sbjct: 77 GEVYDVAVDIRRGSPYFGRWVAAILSGENRKQFWIPEGFAHGFAVLSERAVFSYLCTDVY 136
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E D+ V W D +I + WP+ T+L S+KD P L I
Sbjct: 137 VKEADAVVRWDDPAIAVDWPINATVL---SQKDAVAPCLADI 175
>gi|90425693|ref|YP_534063.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
BisB18]
gi|90107707|gb|ABD89744.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
BisB18]
Length = 184
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 94/161 (58%), Gaps = 3/161 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F +T+ + + GL Q + S++ T+RGLHFQ P+ + KLVR + G
Sbjct: 21 DERGYFLRTFCASTFEAHGLNPAIDQASLSYNRAQYTLRGLHFQAQPHMEDKLVRVVNGA 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
IFD+AVDIR +S T+ W + E++ N +YIP GFAHGF+TL T V Y++ Y
Sbjct: 81 IFDVAVDIRTDSKTFARWYAAELTEQNQRALYIPRGFAHGFLTLTDETTVAYQIAQPYVA 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
GV + D I + WP ++ +S++D++LP L ID
Sbjct: 141 SLARGVNFSDPQIAVRWPHPPSV---ISQRDRDLPALAAID 178
>gi|187880625|gb|ACD37131.1| RmlC [Shigella boydii]
Length = 176
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 104/174 (59%), Gaps = 6/174 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V+I++ + D+RG+F + Y + + L ++ FVQDN+S S +RGLHFQ+
Sbjct: 8 LDGVKIIEPVVYGDNRGFFLEVYQKQRYQNLLNIEFDFVQDNYSRS-SKNVLRGLHFQKT 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVDIR+ SP YG W+ + +S N Q ++P GFAHGF+ L
Sbjct: 67 K-PQGKLVRVVRGEVFDVAVDIRKESPNYGQWIGVLLSEMNKKQFWVPPGFAHGFVVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK T++Y E + + W D ++I WPL + IL S+KD L ++
Sbjct: 126 MADFEYKCTEYYDPEDECCLLWNDPELNIQWPLSNPIL---SDKDMKGCLLKEL 176
>gi|171912554|ref|ZP_02928024.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Verrucomicrobium spinosum DSM
4136]
Length = 183
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 99/179 (55%), Gaps = 7/179 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ D+RG+ ++TY GL + Q NH+ + G++RGLH+Q
Sbjct: 7 TIPEVMIVEPEPHHDARGFLARTYCEGEFACRGLNTRWPQQNHTLTKGRGSVRGLHWQAD 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P ++ KLVRC+AG D+ VD+R +SPT+G W E+SA + IYIP GFAHGF L
Sbjct: 67 PASEIKLVRCLAGCALDVVVDVRPDSPTFGTWELHELSAASRRAIYIPAGFAHGFQCLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSV--SEKDQNLPFLNQIDSP 178
E+ Y +++ ++ G+ D ++ I WP LP V SE+D NLP + P
Sbjct: 127 ECELFYLMSERHAPALARGLNASDPTLAIPWP-----LPVVNRSERDVNLPLWSDFAKP 180
>gi|116687025|ref|YP_840272.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia cenocepacia
HI2424]
gi|116652740|gb|ABK13379.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia cenocepacia
HI2424]
Length = 193
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 101/171 (59%), Gaps = 5/171 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +++ F D+RG+F +++ + L++ G+ FVQDN S S G +RGLH+QR Q
Sbjct: 12 VLLIEPGVFGDARGFFVESFRASWLRDAGVDATFVQDNQSRS-RRGVLRGLHYQRV-NPQ 69
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV G ++D+AVDIRR SP++G W + + ++IP GFAHGF L +
Sbjct: 70 GKLVHASRGAVYDVAVDIRRGSPSFGRWFGALLDDVSHRMLWIPPGFAHGFCVLSDEADF 129
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILP-SVSEKDQNLPFLNQI 175
YK T +Y + D+GV W D +I I WP D+ P +S+KD+ P L ++
Sbjct: 130 AYKCTQYYDPDSDAGVRWDDPAIGIDWP--DSGAPYQLSDKDRRQPPLAEL 178
>gi|86135157|ref|ZP_01053739.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Polaribacter sp. MED152]
gi|85822020|gb|EAQ43167.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Polaribacter sp. MED152]
Length = 176
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 96/154 (62%), Gaps = 3/154 (1%)
Query: 14 FEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
++D RG F ++++ + K +G FVQDN S S G IR LH Q+ PY+QAKLVR +
Sbjct: 19 YKDERGTFVESFNQQEFEKAIGTTVNFVQDNESVS-KKGVIRALHMQKEPYSQAKLVRVV 77
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
GR+ D+AVD R++SPT+G S+E+S NG Q++IP F HGF TLE +T YK ++
Sbjct: 78 KGRVLDVAVDCRKDSPTFGQHFSIELSRENGKQLFIPRNFLHGFSTLEDDTIFNYKCDNY 137
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
Y + G+ + D ++ I W + + +SEKD
Sbjct: 138 YQRGSELGIIYNDATLGIDWKIGSEEII-LSEKD 170
>gi|270261089|ref|ZP_06189362.1| hypothetical protein SOD_a03140 [Serratia odorifera 4Rx13]
gi|270044573|gb|EFA17664.1| hypothetical protein SOD_a03140 [Serratia odorifera 4Rx13]
Length = 177
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 102/171 (59%), Gaps = 6/171 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V++++ + F D RG+F +T+ +E LG+ FVQDNHS S G +RGLHFQ
Sbjct: 11 VKLIEPKVFGDHRGFFMETFQKDRYQEVLGIDVDFVQDNHSRS-SHGVLRGLHFQTAK-P 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G ++D+ VDIR +SPT+ WV + +S N Q+++P G AHGF+ + + +
Sbjct: 69 QGKLVRVVRGEVYDVVVDIRPDSPTFKKWVGVYLSEENKNQLWVPPGLAHGFVVVSESAD 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK TD+Y +++ + W D + I WP+ + P +S KD L ++
Sbjct: 129 FEYKCTDYYDPSNEACLLWNDPEVGIEWPISE---PLLSPKDLQGKLLREL 176
>gi|238927143|ref|ZP_04658903.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas flueggei ATCC
43531]
gi|238884925|gb|EEQ48563.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas flueggei ATCC
43531]
Length = 182
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F +T+ + + LGL F ++ S S CG +RGLHFQ PP K+V C G
Sbjct: 22 DQRGIFIKTFHVEEFRRLGLPTSFAEEYFSVS-HCGVLRGLHFQTPPMDHEKIVYCAQGE 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+ D VD+R SPTYG + A G IYIP G AHGF L N ++Y+VT Y+
Sbjct: 81 VLDAVVDLRCGSPTYGQHELFHLCAGEGTMIYIPKGMAHGFYVLSENALMMYQVTSVYAP 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
+ D+GV W S I W + P +S +D P L++ SPF ++
Sbjct: 141 DCDAGVRWD--SAGIPW---NAAHPILSARDALFPLLDEFVSPFVFE 182
>gi|114046910|ref|YP_737460.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sp. MR-7]
gi|113888352|gb|ABI42403.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sp. MR-7]
Length = 180
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 100/166 (60%), Gaps = 8/166 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYS----SKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
V + + + F D RG+F +T+ S+ LK GL + VQDN S S +RGLH+Q
Sbjct: 11 VLVFEPQVFGDERGFFMETFRQSFFSECLKNRGLDALELVQDNFSRS-QQHVLRGLHYQ- 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Y Q KLVR AG IFD+AVDIR S TYG WV +SA+N LQ++IP GFAHGF L
Sbjct: 69 CKYPQGKLVRVCAGSIFDVAVDIRPQSGTYGKWVGRVLSADNHLQMWIPPGFAHGFYVLS 128
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+VIY+ TD+Y+ + + +AW I WP+ + P +SE+D
Sbjct: 129 EYADVIYRCTDYYAPDDEYVLAWNSAEFAIDWPVHNEP-PILSERD 173
>gi|87303233|ref|ZP_01086026.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Synechococcus sp. WH
5701]
gi|87282128|gb|EAQ74089.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Synechococcus sp. WH
5701]
Length = 191
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 98/174 (56%), Gaps = 4/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V + + + F D RG+F +T +L E G+ + VQ N S S CG +RGLH+Q
Sbjct: 7 SIPEVLLFQPKVFGDERGFFVETARQSVLDEAGIPPL-VQHNQSRS-RCGVLRGLHYQLV 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVRC G +FD+AVD+RR S T+G WV + + Q+++P GFAHGF+ L
Sbjct: 65 -QTQGKLVRCSRGAVFDVAVDVRRGSATFGQWVGAILDDVSHHQLWVPPGFAHGFLVLSE 123
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP-LLDTILPSVSEKDQNLPFLNQ 174
+ Y +D+Y + G+AW D + I WP L D + +S KD P L Q
Sbjct: 124 VADFCYLCSDYYHPPSEQGIAWDDPELGIAWPDLPDGVEAQLSAKDLVNPRLAQ 177
>gi|251797830|ref|YP_003012561.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. JDR-2]
gi|247545456|gb|ACT02475.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. JDR-2]
Length = 182
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 99/164 (60%), Gaps = 3/164 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +++ D+RG+F++ + KE GL++ F Q + S + GTIRG+HFQ P+A+
Sbjct: 11 VYLIEPEPISDNRGFFARAFCRNQFKERGLEENFQQWSISSNIHKGTIRGMHFQNLPFAE 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KL++CI G ++D+ VDIR++S TY W + ++ N +YIP G+AHGF TLE ++ +
Sbjct: 71 NKLIQCIQGSVYDVVVDIRKDSKTYKQWEAFRLTGENHHMLYIPPGYAHGFQTLEPHSTL 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
Y ++ Y +G + D + I W + D P +SE+D +L
Sbjct: 131 YYHMSGIYDPSVQNGARYDDPAFHIKW-VYDN--PVISERDAHL 171
>gi|317063604|ref|ZP_07928089.1| CDP-3,6-dideoxy-D-glycero-D-glycero-4-hexulose-5-epimerase
[Fusobacterium ulcerans ATCC 49185]
gi|313689280|gb|EFS26115.1| CDP-3,6-dideoxy-D-glycero-D-glycero-4-hexulose-5-epimerase
[Fusobacterium ulcerans ATCC 49185]
Length = 183
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 96/168 (57%), Gaps = 6/168 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I+K + F+D RG F +TY+ ++ L F + S S + IRG+HFQ PP+
Sbjct: 14 VFIIKNKIFQDERGIFIKTYNKDEFEKNNLYTEFRESYFSIS-NKDVIRGMHFQLPPFEH 72
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV G++ D+ VD+R+NS T G ++SLE+S NG +YIP G AHGF +LE + +
Sbjct: 73 EKLVYVAKGKVLDVIVDLRKNSKTLGKYISLELSEENGYSVYIPKGLAHGFKSLEDGSIM 132
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
IY V Y+ E D G+ W SI W T P +S +D+N +N
Sbjct: 133 IYNVATVYNSESDYGIRWN--SIGFDWR---TEEPILSVRDKNFESMN 175
>gi|317401446|gb|EFV82078.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Achromobacter xylosoxidans
C54]
Length = 184
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 98/182 (53%), Gaps = 9/182 (4%)
Query: 1 MNINP-----VRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIR 54
M I P V +++ D RG F +TY +L +G + FVQDN S S +R
Sbjct: 1 MTITPLALPDVLLIEPEVHRDERGCFLETYRQSVLDAAVGRELRFVQDNQSESHR-NVLR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
GLH+Q Q KL+R G I+D+AVD+R+ SPT+G WV+ +SA N Q++IP GFAH
Sbjct: 60 GLHYQTVD-PQGKLLRVTQGEIYDVAVDMRQGSPTFGQWVAQRLSAANHRQMWIPEGFAH 118
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
GF+ L V YK T +Y H V W D + I WPL P +S D+N L +
Sbjct: 119 GFLVLSARAVVSYKATSYYQPMHQQCVLWNDPVLGIEWPLGQEA-PLLSAADRNGRLLAE 177
Query: 175 ID 176
D
Sbjct: 178 AD 179
>gi|257469358|ref|ZP_05633452.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium ulcerans ATCC
49185]
Length = 180
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 96/168 (57%), Gaps = 6/168 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I+K + F+D RG F +TY+ ++ L F + S S + IRG+HFQ PP+
Sbjct: 11 VFIIKNKIFQDERGIFIKTYNKDEFEKNNLYTEFRESYFSIS-NKDVIRGMHFQLPPFEH 69
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV G++ D+ VD+R+NS T G ++SLE+S NG +YIP G AHGF +LE + +
Sbjct: 70 EKLVYVAKGKVLDVIVDLRKNSKTLGKYISLELSEENGYSVYIPKGLAHGFKSLEDGSIM 129
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
IY V Y+ E D G+ W SI W T P +S +D+N +N
Sbjct: 130 IYNVATVYNSESDYGIRWN--SIGFDWR---TEEPILSVRDKNFESMN 172
>gi|77457739|ref|YP_347244.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas fluorescens
Pf0-1]
gi|77381742|gb|ABA73255.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas
fluorescens Pf0-1]
Length = 186
Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 101/166 (60%), Gaps = 3/166 (1%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKL 68
++ ++FED RG F++ + LK G + Q NHS + + G++RGLH+Q +AKL
Sbjct: 17 VQHKRFEDQRGHFARLFCEGSLKAFGSEFHIRQINHSCTREKGSVRGLHYQNANAPEAKL 76
Query: 69 VRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128
+ C+ G ++D+AVD+R +S T+ W + + A +G + IP GFAHGF TL + E++Y
Sbjct: 77 ITCLRGEVWDVAVDLRPDSETFLHWHAEHLKAGDGRSLLIPAGFAHGFQTLTEDAELLYL 136
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ Y+ EH+ G++ D + I WPL + ++S +D + P L+Q
Sbjct: 137 HSADYAPEHEGGLSVNDPRLAIAWPL---PVNNLSARDSSHPALDQ 179
>gi|302670473|ref|YP_003830433.1| dTDP-4-dehydrorhamnose 3,5-epimerase RfbC1 [Butyrivibrio
proteoclasticus B316]
gi|302394946|gb|ADL33851.1| dTDP-4-dehydrorhamnose 3,5-epimerase RfbC1 [Butyrivibrio
proteoclasticus B316]
Length = 176
Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 95/157 (60%), Gaps = 3/157 (1%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
+D RG+FS+ +K+ GL FVQ + S ++ GT+RG+H Q A+ K + C+ G
Sbjct: 20 KDERGYFSRIADVNEIKKTGLNAEFVQISASRNYKKGTLRGMHMQIGTSAEEKYISCVEG 79
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
++D+ +D+R+ SPTY + S +S NG IYIP G AHGF++L N+++IY +T+ +
Sbjct: 80 EVYDVCLDLRKTSPTYLKYCSAVLSEENGYAIYIPKGCAHGFVSLRDNSQLIYFMTNEHD 139
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPF 171
+ + G W D + I WP+L + +S++D N P
Sbjct: 140 KQAERGYLWSDPAFSIDWPILPEV---ISDRDNNWPL 173
>gi|311694791|gb|ADP97664.1| dTDP-4-dehydrorhamnose 3,5-epimerase [marine bacterium HP15]
Length = 174
Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 97/161 (60%), Gaps = 3/161 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
++ ++ D RG+F + + + ++E+GL Q N S GT+RGLH+Q P+ + K
Sbjct: 13 LIDVKRIGDDRGFFGRLWCEREMEEMGLVSAIKQSNIGVSPLKGTLRGLHYQTAPHQEVK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
++RC G I+D+ VD+R +SPT+ W ++E++A N +Y+P G A G+ TL +TE+ Y
Sbjct: 73 IIRCPRGAIYDVIVDLRPDSPTFKKWFAVELTAENSRMLYVPEGCATGYQTLVDDTEIYY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
++FY E +GV D + I WPL + ++S+ D+N
Sbjct: 133 HTSEFYHPESATGVRHDDPTFGIEWPLP---IAAISDNDKN 170
>gi|194292861|ref|YP_002008768.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Cupriavidus taiwanensis LMG
19424]
gi|193226765|emb|CAQ72716.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Cupriavidus taiwanensis LMG
19424]
Length = 184
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 95/179 (53%), Gaps = 7/179 (3%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M P RI + D RG F++ + GL FVQ + S + G +RG
Sbjct: 1 MIFTPTRIAGAWLIDPEPLHDERGHFARIVCQATFERHGLNARFVQQSVSRNTRAGILRG 60
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
+HFQ A+ KLVR AG + D+ +D+RR+S TY W + E+SA + +YIP G AHG
Sbjct: 61 MHFQAGAAAEEKLVRATAGVVHDVILDLRRDSATYLQWQAFELSAQSQRAVYIPKGVAHG 120
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
F TL +EV Y++T YS +H G+ W D I I WP + L +S +D LP L +
Sbjct: 121 FQTLTALSEVFYQMTVPYSPQHSQGLRWDDPDIGIAWPDCEDRL--ISARDLALPTLAE 177
>gi|88800557|ref|ZP_01116119.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Reinekea sp. MED297]
gi|88776702|gb|EAR07915.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Reinekea sp. MED297]
Length = 185
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 102/179 (56%), Gaps = 8/179 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ-- 59
+I V +L + D RG+F +T+ +E FVQDNHS S G +RGLH+Q
Sbjct: 7 SIPDVVLLTPEVYGDERGFFMETFRQSEFEEHCGNYQFVQDNHSKS-KKGILRGLHYQLE 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+P Q KLVR G +FD+AVD+R++SPT+G WV L ++ +N +++P GFAHGF
Sbjct: 66 KP---QGKLVRVTKGEVFDVAVDMRQSSPTFGKWVGLYLNESNKQMLWVPPGFAHGFYVT 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD-QNLPFLNQIDS 177
E YK TD+YS + + W D S+ I WP + P ++EKD Q F+ +S
Sbjct: 123 SDEAEFQYKCTDYYSPGDEYSLFWSDSSLAIGWPGIGGC-PQLAEKDAQGKSFIELCES 180
>gi|328954210|ref|YP_004371544.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfobacca acetoxidans DSM
11109]
gi|328454534|gb|AEB10363.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfobacca acetoxidans DSM
11109]
Length = 185
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 97/172 (56%), Gaps = 9/172 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ--RPPY 63
+++++ R F D RG+F Y + + G++ FVQD+ S+S G +RGLH+Q RP
Sbjct: 11 IKLIEPRVFTDRRGYFFDIYQALGYSDHGIEARFVQDSLSYSLH-GVVRGLHYQLRRP-- 67
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
Q KL+ + G + D+ VDIR S + W +SA+N Q+++P GFAHGF +
Sbjct: 68 -QGKLITVLQGEVIDVVVDIRLGSKNFARWTKNLLSADNHRQLFVPPGFAHGFTVISEAA 126
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
++YK TD+Y + G+ W D + I WP+ IL S+KD LP L +
Sbjct: 127 AILYKCTDYYDPLDEYGILWNDSHLGIDWPVTAHIL---SDKDARLPLLRDV 175
>gi|29346238|ref|NP_809741.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides thetaiotaomicron
VPI-5482]
gi|298385615|ref|ZP_06995173.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 1_1_14]
gi|29338133|gb|AAO75935.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides thetaiotaomicron
VPI-5482]
gi|298261756|gb|EFI04622.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 1_1_14]
Length = 182
Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 107/175 (61%), Gaps = 3/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ V +++ + D RG+F + + + + ++G D FVQDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPNVYSDERGYFMEAFKKEEFEAKIGPVD-FVQDNESKS-SFGVLRGLHYQK 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Y+QAKLVR + G++ D+AVD+RR+SPT+G VS +S N Q +IP GFAHGF+ L
Sbjct: 65 GEYSQAKLVRVLKGKVLDVAVDLRRSSPTFGKHVSALLSEENKRQFFIPRGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+YKV + Y+ + ++ + + D+++ I W L ++ + + + + F + +
Sbjct: 125 EEAVFMYKVDNKYAPQAEASIVYNDETLGIDWMLGESQMLLSPKDKEGMAFRDAV 179
>gi|24374673|ref|NP_718716.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella oneidensis MR-1]
gi|24349315|gb|AAN56160.1|AE015753_6 dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella oneidensis MR-1]
Length = 179
Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 97/169 (57%), Gaps = 10/169 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQ- 59
V I + + F D RG+F +T+ E L F VQDN+S S +RGLH+Q
Sbjct: 11 VLIFEPKVFGDERGFFMETFRQAYFTECLLSRGFEAPALVQDNYSRS-QQHVLRGLHYQL 69
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
R P Q KLVR AG IFD+AVDIR S TYG WV +SA+N LQ++IP GFAHGF L
Sbjct: 70 RHP--QGKLVRVCAGSIFDVAVDIRPQSATYGKWVGRILSADNHLQMWIPPGFAHGFYVL 127
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+V+Y+ +D+Y+ + + W I WPLL+ P +S +D N
Sbjct: 128 SEYADVLYRCSDYYAPNDEYVLPWNSVQFAIDWPLLNET-PILSARDAN 175
>gi|160884576|ref|ZP_02065579.1| hypothetical protein BACOVA_02563 [Bacteroides ovatus ATCC 8483]
gi|293373077|ref|ZP_06619445.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides ovatus SD CMC 3f]
gi|156110315|gb|EDO12060.1| hypothetical protein BACOVA_02563 [Bacteroides ovatus ATCC 8483]
gi|292631963|gb|EFF50573.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides ovatus SD CMC 3f]
Length = 182
Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 97/157 (61%), Gaps = 3/157 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
I+ V +++ R F D RG+F + Y + E + V F+QDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPRVFSDERGYFMEAYKKEEF-EANIGPVNFIQDNESKS-SFGVLRGLHYQK 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
++QAKLVR + G + D+AVD+R++SPT+G V + +S N Q +IP GFAHGF L
Sbjct: 65 GEHSQAKLVRVLKGEVLDVAVDLRKSSPTFGKHVCVLLSEENKRQFFIPRGFAHGFAVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDT 157
YKV + Y+ + ++ + + D+++ I WPL ++
Sbjct: 125 EEAVFTYKVDNKYAPQAEASILYNDEALGIDWPLAES 161
>gi|297526887|ref|YP_003668911.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Staphylothermus hellenicus
DSM 12710]
gi|297255803|gb|ADI32012.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Staphylothermus hellenicus
DSM 12710]
Length = 141
Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 84/129 (65%), Gaps = 3/129 (2%)
Query: 53 IRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGF 112
+R L++Q P Q +L+ + GRI D+AVDIRR SP YG +V+ E+S +N L ++IP GF
Sbjct: 14 VRDLYYQLEPMEQGRLITVLRGRILDVAVDIRRGSPWYGKYVAAELSGDNHLLLWIPPGF 73
Query: 113 AHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
AHGF LE +T V+Y VT YS EH+ + W D I I WP+ I VSEKD+ P L
Sbjct: 74 AHGFQALEDDTIVLYLVTKEYSPEHERCIRWDDPEISIDWPVKPAI---VSEKDKKCPPL 130
Query: 173 NQIDSPFEY 181
+Q ++ F+Y
Sbjct: 131 SQAETNFKY 139
>gi|237718562|ref|ZP_04549043.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_2_4]
gi|229452022|gb|EEO57813.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_2_4]
Length = 182
Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 97/157 (61%), Gaps = 3/157 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
I+ V +++ R F D RG+F + Y + E + V F+QDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPRVFSDERGYFMEAYKKEEF-EANIGPVNFIQDNESKS-SFGVLRGLHYQK 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
++QAKLVR + G + D+AVD+R++SPT+G V + +S N Q +IP GFAHGF L
Sbjct: 65 GEHSQAKLVRVLKGEVLDVAVDLRKSSPTFGKHVCVLLSEENKRQFFIPRGFAHGFAVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDT 157
YKV + Y+ + ++ + + D+++ I WPL ++
Sbjct: 125 EEAVFTYKVDNKYAPQAEASILYNDETLGIDWPLAES 161
>gi|253568329|ref|ZP_04845740.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 1_1_6]
gi|251842402|gb|EES70482.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 1_1_6]
Length = 182
Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 100/157 (63%), Gaps = 3/157 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ V +++ + D RG+F + + + + ++G D FVQDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPNVYSDERGYFMEAFKKEEFEAKIGPVD-FVQDNESKS-SFGVLRGLHYQK 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Y+QAKLVR + G++ D+AVD+RR+SPT+G VS +S N Q +IP GFAHGF+ L
Sbjct: 65 GEYSQAKLVRVLKGKVLDVAVDLRRSSPTFGKHVSALLSEENKRQFFIPRGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDT 157
+YKV + Y+ + ++ + + D+++ I W L ++
Sbjct: 125 EEAVFMYKVDNKYAPQAEASIVYNDETLGIDWMLGES 161
>gi|260174899|ref|ZP_05761311.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D2]
gi|315923142|ref|ZP_07919382.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313697017|gb|EFS33852.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 182
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 97/157 (61%), Gaps = 3/157 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
I+ V +++ R F D RG+F + Y + E + V F+QDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPRVFSDERGYFMEAYKKEEF-EANIGPVNFIQDNESKS-SFGVLRGLHYQK 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
++QAKLVR + G + D+AVD+R++SPT+G V + +S N Q +IP GFAHGF L
Sbjct: 65 GEHSQAKLVRVLKGEVLDVAVDLRKSSPTFGKHVCVLLSEENKRQFFIPRGFAHGFAVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDT 157
YKV + Y+ + ++ + + D+++ I WPL ++
Sbjct: 125 EEAVFTYKVDNKYAPQAEASILYNDETLGIDWPLAES 161
>gi|255691874|ref|ZP_05415549.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides finegoldii DSM
17565]
gi|260622427|gb|EEX45298.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides finegoldii DSM
17565]
Length = 182
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 104/175 (59%), Gaps = 3/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ V +++ + F D RG+F + + + + +G D FVQDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPKVFSDERGYFMEAFKKEEFEANIGPVD-FVQDNESKS-SFGVLRGLHYQK 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
++QAKLVR I G + D+AVD+RR+SPT+G V + +S N Q +IP GFAHGF L
Sbjct: 65 GEHSQAKLVRVIKGEVLDVAVDLRRSSPTFGKHVCVLLSEENKRQFFIPRGFAHGFAVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YKV + Y+ + ++ + + D ++ I WPL ++ + + + + F + +
Sbjct: 125 DEAIFTYKVDNKYAPQSEASIIYNDATLGIDWPLAESQMLLSPKDKEGMAFKDAV 179
>gi|328545881|ref|YP_004305990.1| dTDP-4-dehydrorhamnose 3,5-epimerase [polymorphum gilvum
SL003B-26A1]
gi|326415621|gb|ADZ72684.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Polymorphum gilvum
SL003B-26A1]
Length = 179
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 96/169 (56%), Gaps = 3/169 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++PV ++ D RG F++ + ++ + GL Q N S S T+RG+HFQ
Sbjct: 7 ELDPVVEIRLSPRRDDRGAFTRLFCAEEFRAAGLAFALAQSNLSESRHRHTLRGMHFQYR 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
A+ K+V I GRIFD+A+D+R SP++G WV E+SA+ + IP GFAHGF+TLE
Sbjct: 67 EAAETKIVFPITGRIFDVALDLRAGSPSFGRWVGRELSADRRNALVIPKGFAHGFLTLEP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
+T V+Y V Y+ + GV W D I WP + +S++D+ P
Sbjct: 127 DTHVMYLVDAPYNGATEGGVRWDDPQFAIDWPHEPAV---ISDRDRAHP 172
>gi|113969681|ref|YP_733474.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sp. MR-4]
gi|113884365|gb|ABI38417.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sp. MR-4]
Length = 180
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 100/166 (60%), Gaps = 8/166 (4%)
Query: 6 VRILKTRKFEDSRGWF----SQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQR 60
V + + + F D RG+F Q+Y ++ + GL+ VQDN+S S +RGLH+Q
Sbjct: 11 VLVFEPQVFGDERGFFMETFRQSYFTECFQSRGLKAPELVQDNYSRS-QQHVLRGLHYQ- 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+ Q KLVR AG IFD+AVDIR S TYG WV +SA+N LQ++IP GFAHGF L
Sbjct: 69 CKHPQGKLVRVCAGSIFDVAVDIRPQSETYGKWVGRVLSADNHLQMWIPPGFAHGFYVLS 128
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+VIY+ TD+Y+ + + +AW I WPL + P +SE+D
Sbjct: 129 EYADVIYRCTDYYAPDDEYVLAWNSAEFAIDWPLRNEP-PILSERD 173
>gi|62361812|gb|AAX81442.1| RfbD [Xylella fastidiosa]
gi|62511697|gb|AAX84437.1| RfbD [Xylella fastidiosa]
gi|62511701|gb|AAX84439.1| RfbD [Xylella fastidiosa]
gi|62511703|gb|AAX84440.1| RfbD [Xylella fastidiosa]
gi|62511705|gb|AAX84441.1| RfbD [Xylella fastidiosa]
gi|62511707|gb|AAX84442.1| RfbD [Xylella fastidiosa]
gi|62511709|gb|AAX84443.1| RfbD [Xylella fastidiosa]
gi|62511713|gb|AAX84445.1| RfbD [Xylella fastidiosa]
Length = 143
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 86/141 (60%), Gaps = 2/141 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F+D+RG F + ++++ + G+ FVQ N S S G +RGLH+Q P Q KLV +
Sbjct: 1 FDDARGEFFEAWNAECFERQGMSSRFVQSNVSISM-YGVLRGLHYQWPR-PQGKLVGVLE 58
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G ++D+AVDIR SP YG WV++ +SA N Q++IP GFAHGF+ L Y TD Y
Sbjct: 59 GEVYDVAVDIRLGSPHYGRWVAVLLSAKNKRQLWIPEGFAHGFVVLSERAVFNYLCTDVY 118
Query: 134 SVEHDSGVAWQDKSIDITWPL 154
E D+G+ W D I + WP+
Sbjct: 119 VKEADAGIRWNDAVIGVDWPI 139
>gi|325290741|ref|YP_004266922.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Syntrophobotulus glycolicus
DSM 8271]
gi|324966142|gb|ADY56921.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Syntrophobotulus glycolicus
DSM 8271]
Length = 182
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 92/174 (52%), Gaps = 6/174 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+LK + F D RG + Y S K LGL + ++ S IRGLHFQ PP+ Q K
Sbjct: 14 LLKPKTFGDERGTLIKPYHSDSYKALGLHSEYNEELVVTSHK-NVIRGLHFQNPPFPQIK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
+V C+ GRI D+ VDIR+ SPTYG W + N +Y+P G AHG+ NT V Y
Sbjct: 73 VVSCVMGRILDVVVDIRKGSPTYGEWEGFILDNENNYSLYVPEGMAHGYAVYSENTIVCY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
++++ + + DSG+ W + L D P +S KD L ++ +S F Y
Sbjct: 133 RMSNVFMPQLDSGIKWDSAGV-----LWDIESPIISPKDSGLISFDKFESRFVY 181
>gi|228996409|ref|ZP_04156051.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus mycoides Rock3-17]
gi|228763372|gb|EEM12277.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus mycoides Rock3-17]
Length = 132
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 81/129 (62%), Gaps = 3/129 (2%)
Query: 53 IRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGF 112
IRGLHFQ P AQ KLV+ I G IFD+ VD+R+ SPTY W S ++ +N + +P GF
Sbjct: 2 IRGLHFQLEPRAQTKLVQVIQGAIFDVIVDLRKGSPTYKKWQSFLLTGDNHRLLLVPKGF 61
Query: 113 AHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
AHGF TL +T V YKV +FY DSG+AW D+ I+WP+ + IL SEKD LP
Sbjct: 62 AHGFCTLVPHTIVHYKVDEFYDASCDSGIAWNDEEFAISWPVSNPIL---SEKDGMLPKF 118
Query: 173 NQIDSPFEY 181
+ F++
Sbjct: 119 TETTHYFQF 127
>gi|83309148|ref|YP_419412.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzyme
[Magnetospirillum magneticum AMB-1]
gi|82943989|dbj|BAE48853.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzyme
[Magnetospirillum magneticum AMB-1]
Length = 194
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 95/165 (57%), Gaps = 5/165 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V IL+ R+F D RG F S ++ G+ FVQ +HS S GT+RGLH Q P
Sbjct: 19 LSDVLILEPRQFRDERGVFFDALSPEICAAAGMSAAFVQHSHSVSRK-GTVRGLHIQLP- 76
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+ D+R SPT+G + + +SA N +++ G AHGFM LE +
Sbjct: 77 RTQGKLVRVVRGSVFDVVADVRPQSPTFGRHIHVRLSAENRRMLWVGHGLAHGFMALEDD 136
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+E+IY + D Y + W D + I WP L+ P++S KD+
Sbjct: 137 SEMIYALDDVYDPGGQWTIRWNDPDLAIGWPDLE---PNLSPKDE 178
>gi|227487169|ref|ZP_03917485.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227092827|gb|EEI28139.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 197
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 99/164 (60%), Gaps = 6/164 (3%)
Query: 16 DSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D RG F + + + +E +G Q N S S G +RGLH+ P QAK V CI+G
Sbjct: 20 DDRGTFHEWFKATDFEEAVGFPFDLQQANVSTS-KSGVLRGLHYADVPPGQAKFVSCISG 78
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
RI+D+AVDIR+ S ++G ++ +E+SA N +Y+P GFAHGF+ LE +T V Y ++ Y+
Sbjct: 79 RIWDVAVDIRKGSASFGRYIGVELSAENRHSLYLPVGFAHGFVALEDST-VAYLCSEGYN 137
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
H+ G+ D+ + I WP D IL S+KDQN P L ++ P
Sbjct: 138 PSHEHGINAFDEELGIDWPSRDVIL---SDKDQNAPGLREVKLP 178
>gi|227541663|ref|ZP_03971712.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227182631|gb|EEI63603.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 197
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 99/164 (60%), Gaps = 6/164 (3%)
Query: 16 DSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D RG F + + + +E +G Q N S S G +RGLH+ P QAK V CI+G
Sbjct: 20 DDRGTFHEWFKATDFEEAVGFPFDLQQANVSTS-KSGVLRGLHYADVPPGQAKFVSCISG 78
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
RI+D+AVDIR+ S ++G ++ +E+SA N +Y+P GFAHGF+ LE +T V Y ++ Y+
Sbjct: 79 RIWDVAVDIRKGSASFGRYIGVELSAENRHSLYLPVGFAHGFVALEDST-VAYLCSEGYN 137
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
H+ G+ D+ + I WP D IL S+KDQN P L ++ P
Sbjct: 138 PSHEHGINAFDEELGIDWPSRDVIL---SDKDQNAPGLREVKLP 178
>gi|310827983|ref|YP_003960340.1| dTDP-4-dehydrorhamnose 3 [Eubacterium limosum KIST612]
gi|308739717|gb|ADO37377.1| dTDP-4-dehydrorhamnose 3 [Eubacterium limosum KIST612]
Length = 189
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 95/157 (60%), Gaps = 6/157 (3%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
ED RG+F +++ ++ + G++ +D S+S G +RGLHFQ QAKLVR + G
Sbjct: 23 EDERGFFLKSFEKEIFWQNGIKTEIFEDFESYSIK-GVLRGLHFQTEK-PQAKLVRALTG 80
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
I+D+AVD+R+ S T+G W + +S +N +IP GFAHGF+ L N V YK +S
Sbjct: 81 TIYDVAVDLRKTSKTFGKWHAEILSVDNHKAFFIPKGFAHGFLVLSDNALVSYKCEGAFS 140
Query: 135 VEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNL 169
E D+G+ W D + I WP +D I+ VSEKD+ L
Sbjct: 141 KETDTGIVWNDPELKIDWPTNQVDEII--VSEKDRRL 175
>gi|268593347|ref|ZP_06127568.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Providencia rettgeri DSM
1131]
gi|291311044|gb|EFE51497.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Providencia rettgeri DSM
1131]
Length = 182
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 98/175 (56%), Gaps = 5/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE--LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
NI V+I++ + F D RG+F + + + +E FVQDN S S G +RGLH+Q
Sbjct: 7 NIPEVKIIEPQVFGDDRGFFLEIWQQEKFEEKITNKPTDFVQDNISKSRK-GILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLV I G +FD+AVDIR NSPT+G WV + +S N Q+++P GFAHGF
Sbjct: 66 TKN-TQGKLVSVILGEVFDVAVDIRANSPTFGQWVGVYLSDKNKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
YK T++Y + + W D ++ I WPL T P +SEKD+ NQ
Sbjct: 125 SDEAVFHYKCTNYYDPLSEQTIMWNDSNLSIEWPLC-TEHPVLSEKDKKGILFNQ 178
>gi|62511695|gb|AAX84436.1| RfbD [Xylella fastidiosa]
gi|62511699|gb|AAX84438.1| RfbD [Xylella fastidiosa]
Length = 143
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 86/141 (60%), Gaps = 2/141 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F+D+RG F + ++++ + G+ FVQ N S S G +RGLH+Q P Q KLV +
Sbjct: 1 FDDARGEFFEAWNAECFERQGMSSRFVQSNVSISM-YGVLRGLHYQWPR-PQGKLVGVLE 58
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G ++D+AVDIR SP YG WV++ +SA N Q++IP GFAHGF+ L Y TD Y
Sbjct: 59 GEVYDVAVDIRLGSPHYGRWVAVLLSAKNKRQLWIPEGFAHGFVVLSERAVFNYLCTDVY 118
Query: 134 SVEHDSGVAWQDKSIDITWPL 154
E D+G+ W D + + WP+
Sbjct: 119 VKEADAGIRWNDAVLGVDWPI 139
>gi|329851012|ref|ZP_08265769.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Asticcacaulis
biprosthecum C19]
gi|328839858|gb|EGF89430.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Asticcacaulis
biprosthecum C19]
Length = 175
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 94/168 (55%), Gaps = 3/168 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V ++++ D RG F +T+ GL +Q++ S + T+RG+H Q P
Sbjct: 8 IDGVVVVESESAADDRGSFVRTWCRDTFAAAGLDFEPIQESLSRNLKTATLRGMHIQGAP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ + KLVRC+ GRIFD+AVD+R +S +Y W LE+ + +++P G AHGF+TL +
Sbjct: 68 FGEQKLVRCLRGRIFDVAVDLRPDSASYCRWFGLELDESRDAALFLPRGVAHGFITLSDD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
V Y + Y+ H GV W D + I WP + +S++D+N P
Sbjct: 128 AWVHYMIDTAYAPGHAGGVRWDDPAFGIAWPTEPVV---ISDRDRNWP 172
>gi|89889756|ref|ZP_01201267.1| dTDP-4-dehydrorhamnose 3, 5-epimerase [Flavobacteria bacterium
BBFL7]
gi|89518029|gb|EAS20685.1| dTDP-4-dehydrorhamnose 3, 5-epimerase [Flavobacteria bacterium
BBFL7]
Length = 178
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 97/167 (58%), Gaps = 3/167 (1%)
Query: 8 ILKTRKFEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
I+K F D RG+FS + + K FV N SFS G +RGLH Q+ AQA
Sbjct: 13 IIKPPVFGDDRGYFSIRHDKNAFAKAFPQHPPFVLHNESFS-SYGVLRGLHLQKGNAAQA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVRC+ G+I D+AVD R +SPTY S+E+S +N LQ+ +P GF HGF L V
Sbjct: 72 KLVRCVQGKILDVAVDFRPDSPTYLQHFSIELSGDNHLQLLVPRGFLHGFSVLSETAIVN 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
Y+V + Y E + G+ + D +++I W + T + +SEKD+ L +L
Sbjct: 132 YQVDNSYQPETEFGIRYDDPTLNIDWQIPTTDI-QLSEKDEKLGYLK 177
>gi|78486027|ref|YP_391952.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thiomicrospira crunogena
XCL-2]
gi|78364313|gb|ABB42278.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thiomicrospira crunogena
XCL-2]
Length = 175
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 99/170 (58%), Gaps = 5/170 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V ++ + FED RG F +T+ ++ + GL+ F + +S S +RG+HFQ PP
Sbjct: 8 IDGVFEIENKVFEDFRGKFVKTFHEEVFRSHGLESNFKESFYSVS-GKNVLRGMHFQLPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ AKLV +G I D+AVDIR S T+G + + ++SA N +Y+ GFAHGF+TL
Sbjct: 67 HDHAKLVYVTSGEILDVAVDIREESSTFGKYFATKLSAKNAKSLYMDKGFAHGFLTLSDF 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
V Y T ++ E+D+G+ W D W ++ P VSE+D+ L +L
Sbjct: 127 ASVTYLTTSVHASEYDTGIHWNSFGFD--WEGVEK--PIVSERDKALEYL 172
>gi|308510905|ref|XP_003117635.1| hypothetical protein CRE_00181 [Caenorhabditis remanei]
gi|308238281|gb|EFO82233.1| hypothetical protein CRE_00181 [Caenorhabditis remanei]
Length = 190
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 101/161 (62%), Gaps = 6/161 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
++K + F D RG+FS++Y+ ++ +++G + QDNHSFS G +RGLH Q P+
Sbjct: 25 VIKPKVFPDERGFFSESYNKTEWAEKIGYTEDLQQDNHSFSH-YGVLRGLHTQ--PH-MG 80
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL-EMNTEV 125
KLV ++G IFD+AVDIR++SPTYG W + ++ANN +IP GF HGF L + V
Sbjct: 81 KLVTVVSGEIFDVAVDIRKDSPTYGKWHGVILNANNKHAFWIPAGFLHGFQVLSKEGAHV 140
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK + Y + + G+ D+ I++ WP+ D + VSE+D
Sbjct: 141 TYKCSAVYDPKTEYGINPFDEDINVDWPIKDKSVVIVSERD 181
>gi|148658186|ref|YP_001278391.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseiflexus sp. RS-1]
gi|148570296|gb|ABQ92441.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseiflexus sp. RS-1]
Length = 193
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 93/161 (57%), Gaps = 4/161 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ F D RG+F ++++ + G+ FVQDNHS S +RG H+Q K
Sbjct: 15 IIEPACFRDERGFFLESWNRRDFAAHGITIDFVQDNHSRSVK-HVLRGFHYQDMTAPMVK 73
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVRC G + D+ VD+R SPT+G W ++E++A N LQ+ +P GF H F+TL E+ Y
Sbjct: 74 LVRCTLGSVLDVIVDLRVGSPTFGRWHAVELTAENMLQLLVPVGFGHAFLTLSDVAEIQY 133
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
K + +Y+ + + W D I + WP+ + IL S++D+
Sbjct: 134 KCSAYYTPSAEGVITWNDPDIGVDWPVTEPIL---SQRDRR 171
>gi|225025750|ref|ZP_03714942.1| hypothetical protein EIKCOROL_02654 [Eikenella corrodens ATCC
23834]
gi|224941531|gb|EEG22740.1| hypothetical protein EIKCOROL_02654 [Eikenella corrodens ATCC
23834]
Length = 136
Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 82/135 (60%), Gaps = 4/135 (2%)
Query: 40 VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEIS 99
+Q NHS S +RGLH+Q Q KLVR IAG +FD+A+D+RR+SPT+G W +S
Sbjct: 1 MQGNHSKSGQA-VLRGLHYQTE-NTQGKLVRVIAGEVFDVAIDLRRSSPTFGQWAGAILS 58
Query: 100 ANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL 159
A N Q+++P GFAHGF L E +YK TD+Y+ + + + W D ++ I WPL
Sbjct: 59 AENKHQLWVPEGFAHGFYVLSEEAEFVYKCTDYYNPKAEHSLLWNDPAVGIEWPLQGE-- 116
Query: 160 PSVSEKDQNLPFLNQ 174
P +S KD LNQ
Sbjct: 117 PKLSPKDLAGKLLNQ 131
>gi|16611773|gb|AAL27354.1|AF402315_9 dTDP-6-deoxy-D-glucose-3,5 epimerase [Shigella boydii]
Length = 177
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 96/166 (57%), Gaps = 5/166 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+N I++ + D RG+F + Y + K + G FVQDN+S S +RGLHFQ
Sbjct: 8 LNDAFIIEPDVYGDERGFFQEVYHHEKYKNIIGENLTFVQDNYSRS-QKNVLRGLHFQTS 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVD+R+NS TYG W +E++ N Q +IP G AHGF+ L
Sbjct: 67 N-PQGKLVRVVRGSVFDVAVDLRKNSSTYGHWYGIELNEWNKKQFWIPPGMAHGFLVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+ YK TDFY E + + W D I++ WP+ + P +S KD+
Sbjct: 126 IADFEYKCTDFYHPEFEKCLIWNDPIINVKWPINEE--PILSPKDR 169
>gi|163850282|ref|YP_001638325.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
PA1]
gi|163661887|gb|ABY29254.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
PA1]
Length = 177
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 87/155 (56%), Gaps = 3/155 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F++T E GL F Q + SF+ GT+RG+HF + P+A+ KLVRC AG
Sbjct: 21 DERGFFARTQCESEFAERGLVGHFTQSSVSFNHRRGTVRGMHFSKLPHAETKLVRCTAGA 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
I D +D+R +SPTY S+ +SA N +YIP G AHGF TL + E++Y + +
Sbjct: 81 IHDAVIDLRPDSPTYLRTTSVTLSAANRHALYIPAGLAHGFQTLSDDAEILYMIDRPFVA 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
GV W D + + WP T+ ++ +D P
Sbjct: 141 SAADGVRWDDPAFGLVWPEPVTV---IAPRDLAFP 172
>gi|327394237|dbj|BAK11659.1| dTDP-4-dehydrorhamnose 3,5-epimerase RfbC [Pantoea ananatis
AJ13355]
Length = 177
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 99/168 (58%), Gaps = 6/168 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ + D RG+F +T+ + +EL + FVQDN+S S +RGLHFQ+
Sbjct: 7 KIADVKIIQPAVYGDDRGFFLETFEKRRYQELLETHLEFVQDNYSRS-GRHVLRGLHFQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G +FD+AVDIR SPT+G W S+ +S N Q++IP G AHGF+ L
Sbjct: 66 TE-PQGKLVRVVRGEVFDVAVDIRPGSPTFGQWESILLSEENKTQLWIPPGLAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+ YK T +Y+ + ++ + W D + I WP+ IL S KDQ
Sbjct: 125 DVADFEYKCTQYYNPKDEACLMWNDPDVAIQWPVEQPIL---SVKDQQ 169
>gi|6688599|emb|CAB65208.1| RmlC protein [Legionella pneumophila]
Length = 188
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 100/177 (56%), Gaps = 4/177 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ ++I++ + + D RG+F +++ +K +EL G+ D FVQDN S + + +
Sbjct: 7 QIDELKIIEPKIYGDERGFFYESFQAKRYEELLGITDRFVQDNFS-KITKRCTKEVCIIK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLV +AG +FD+AVDIR SPT+G WV + +S N Q +IP GFAHGF L
Sbjct: 66 VNKTQGKLVSVLAGEVFDVAVDIRLGSPTFGQWVGVILSGENKRQFWIPKGFAHGFYVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ YK TD+Y E + + + D + I WPL + + +S KD LN ID+
Sbjct: 126 AMADFAYKCTDYYHPESEFSIHYLDPQLAIDWPLGEQV--QLSPKDAAAKLLNLIDA 180
>gi|254246150|ref|ZP_04939471.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia cenocepacia
PC184]
gi|124870926|gb|EAY62642.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia cenocepacia
PC184]
Length = 136
Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 78/115 (67%), Gaps = 2/115 (1%)
Query: 40 VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEIS 99
+QDNHS S G +RGLH+Q +AQ KLVR + G +FD+AVDIR++SP +G WV + +S
Sbjct: 1 MQDNHSRS-SKGVLRGLHYQ-IQHAQGKLVRVVEGEVFDVAVDIRKDSPNFGKWVGVVLS 58
Query: 100 ANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
+N Q+++P GFAHGF+ L + +YK TD++ EH+ + W D I I WP+
Sbjct: 59 NDNHRQLWVPPGFAHGFVVLSEAAQFLYKTTDYWFPEHERSIVWNDPEIGIEWPI 113
>gi|146312295|ref|YP_001177369.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterobacter sp. 638]
gi|145319171|gb|ABP61318.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterobacter sp. 638]
Length = 186
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 93/163 (57%), Gaps = 5/163 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I++ + F+D RG+F + Y + L + FVQDN S S +RGLHFQ+ Q K
Sbjct: 13 IIEPQVFKDERGYFFEVYKKNRYQSLDINAEFVQDNRSKSTK-NVLRGLHFQKNK-PQGK 70
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
L+ G +FD+AVD+R +S T+G + S+ +S N Q YIP GFAHGF L Y
Sbjct: 71 LISVSEGVVFDVAVDLRPDSATFGQYHSVILSDENFQQFYIPPGFAHGFCVLSDTATFQY 130
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
K TD+Y + G+ W D ++I WP+++ P +S KD LP
Sbjct: 131 KCTDYYDPSDEGGIIWNDPVLNIDWPIIE---PIISAKDCALP 170
>gi|304312288|ref|YP_003811886.1| DTDP-4-dehydrorhamnose 3,5-epimerase [gamma proteobacterium HdN1]
gi|301798021|emb|CBL46243.1| DTDP-4-dehydrorhamnose 3,5-epimerase [gamma proteobacterium HdN1]
Length = 183
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 96/158 (60%), Gaps = 3/158 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++ + + + E+ F Q N S + GT+RG+H+Q PP A+AKL+RC+ GR
Sbjct: 21 DERGCFTRLFCEREMTEIRSNLHFTQVNWSQTKSSGTVRGMHYQMPPAAEAKLIRCLHGR 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+ VD+R S T+ W + E+S +N I++P GFAHGF +L N ++Y T ++
Sbjct: 81 VFDVIVDLRPASKTFLQWHATELSEDNFRAIFVPEGFAHGFQSLSENAHLLYMHTVAWTP 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
++G+ D + I+WPL + SE+D++ P ++
Sbjct: 141 ACEAGLRHDDPRLAISWPL---PVLQCSERDRHHPLID 175
>gi|62511711|gb|AAX84444.1| RfbD [Xylella fastidiosa]
Length = 141
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 84/139 (60%), Gaps = 2/139 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG F + ++++ + G+ FVQ N S S G +RGLH+Q P Q KLV + G
Sbjct: 1 DARGEFFEAWNAECFERQGMSSRFVQSNVSISM-YGVLRGLHYQWPR-PQGKLVGVLEGE 58
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
++D+AVDIR SP YG WV++ +SA N Q++IP GFAHGF+ L Y TD Y
Sbjct: 59 VYDVAVDIRLGSPHYGRWVAVLLSAKNKRQLWIPEGFAHGFVVLSERAVFNYLCTDVYVK 118
Query: 136 EHDSGVAWQDKSIDITWPL 154
E D+G+ W D I + WP+
Sbjct: 119 EADAGIRWNDAVIGVDWPI 137
>gi|310778609|ref|YP_003966942.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ilyobacter polytropus DSM
2926]
gi|309747932|gb|ADO82594.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ilyobacter polytropus DSM
2926]
Length = 180
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 92/155 (59%), Gaps = 6/155 (3%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
ED RG F++TY+ L K L+ F + +S S IRG+HFQ PP+ Q K+V G
Sbjct: 20 EDERGSFTKTYNRSLFKNNKLKGKFKESFYSVS-KRDVIRGMHFQLPPHDQDKMVYVTRG 78
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+I D+ +D+R+ S TYG S+E+S +YIP G AHGF +LE ++ V+Y VT +S
Sbjct: 79 KIIDVILDLRKKSKTYGQVFSIELSEEKRNSLYIPKGCAHGFKSLEDDSTVVYDVTTVHS 138
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
E DSG+ W S W T +P +SEKD+NL
Sbjct: 139 PESDSGIRWD--SFGYDWK---TNIPLMSEKDKNL 168
>gi|111225599|ref|YP_716393.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia alni ACN14a]
gi|111153131|emb|CAJ64878.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase) (dTDP-L-rhamnose synthetase) [Frankia
alni ACN14a]
Length = 175
Score = 120 bits (301), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 96/168 (57%), Gaps = 3/168 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I+ F D+RG F++T+ ++ GL Q + +F+ GTIRG+H+ P + K
Sbjct: 3 IVDVEAFTDARGLFARTFCAEEFAAAGLAVEVAQCSVAFNAAAGTIRGMHWAGEPVRETK 62
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVRC G + D+ VD R +SPTY V++E+SA+N ++I G AHG+ TL TE Y
Sbjct: 63 LVRCTRGALLDVVVDPRPDSPTYLSHVAVELSADNHRALFIDAGLAHGYQTLADATEATY 122
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
++ ++ HD G+ + D + I WPL ++ +S+KD+ P L +
Sbjct: 123 QMNVPFTPGHDRGLRFDDPRLGIAWPLPVSV---ISDKDRAWPLLTGV 167
>gi|325108167|ref|YP_004269235.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Planctomyces brasiliensis DSM
5305]
gi|324968435|gb|ADY59213.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Planctomyces brasiliensis DSM
5305]
Length = 180
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 88/152 (57%), Gaps = 4/152 (2%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F + Y E FVQDN+S S GT+RGLH+Q AQ KLV+ I G
Sbjct: 21 DERGFFMEIYQQNRYAEEAKLPDFVQDNYSRSVQ-GTLRGLHYQLEQ-AQGKLVQVIRGE 78
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVD+RR SPT+G V++ ++ Q Y+P G AHGF + + + +YK TDFY
Sbjct: 79 VFDVAVDLRRKSPTFGKHVAVRLNDQTRQQFYVPPGCAHGFYVVSESADFLYKCTDFYHP 138
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+ + W D I I WP+ + P +S KDQ
Sbjct: 139 ASERTLQWNDPEIGIDWPVEEE--PILSAKDQ 168
>gi|209967225|ref|YP_002300140.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Rhodospirillum
centenum SW]
gi|209960691|gb|ACJ01328.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Rhodospirillum
centenum SW]
Length = 195
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 97/173 (56%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I R+++ + D RG F++T+ + + G+ FVQ N S + GT+RG+HFQR P
Sbjct: 8 IAEARLVRLKAHRDDRGAFARTWCRQTFADAGIDFDFVQANWSVTRSRGTVRGMHFQRAP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+A++KLVR GR+ D+ VD+R SPT G SLE+ + +YIP G AHGF TL +
Sbjct: 68 HAESKLVRITRGRVHDVIVDLRAGSPTRGRLHSLELGEGDDTMLYIPAGVAHGFQTLTDD 127
Query: 123 TEVIYKV-TDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
V Y + + Y E+ G D ++ I WPL VS+KD + P L Q
Sbjct: 128 VTVEYFMGGEPYRPEYYDGFRHDDPAVAIRWPLPPG---PVSDKDLSWPPLAQ 177
>gi|324519856|gb|ADY47498.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Ascaris suum]
Length = 304
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 102/176 (57%), Gaps = 6/176 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I +++++ + F D RG+FS++Y+ + K+LG +VF QDNHSFS G +RGLH Q
Sbjct: 130 DIPDLKLIRPKVFPDERGFFSESYNIVEWSKQLGFSEVFKQDNHSFS-KFGVLRGLHCQP 188
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
KLV I+G I+D+AVDIR S TYG W + + +IP GF HGF TL
Sbjct: 189 ---GMGKLVSVISGMIYDVAVDIRPGSATYGKWHGVILDGKTNTNFWIPDGFLHGFYTLS 245
Query: 121 -MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
V+YK TD Y+ + GV D+ I + WP+ + + +SE+D++ L I
Sbjct: 246 PEGAHVVYKCTDVYNPTTEFGVNPFDEEISVKWPIANKDIVIMSERDKSHQNLKDI 301
>gi|218528839|ref|YP_002419655.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium
chloromethanicum CM4]
gi|218521142|gb|ACK81727.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium
chloromethanicum CM4]
Length = 177
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 86/155 (55%), Gaps = 3/155 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F++T E GL F Q + SF+ GT+RG+HF + P+A+ KLVRC G
Sbjct: 21 DERGFFARTQCESEFAERGLVGHFTQSSVSFNHRRGTVRGMHFSKLPHAETKLVRCTGGA 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
I D +D+R +SPTY S+ +SA N +YIP G AHGF TL + E++Y + +
Sbjct: 81 IHDAVIDLRPDSPTYLRTASVTLSAANRHALYIPAGLAHGFQTLSDDAEILYMIDRPFVA 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
GV W D + + WP T+ ++ +D P
Sbjct: 141 SAADGVRWDDPAFGLAWPEPVTV---IAPRDLAFP 172
>gi|300782492|ref|YP_003762783.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Amycolatopsis mediterranei
U32]
gi|299792006|gb|ADJ42381.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Amycolatopsis mediterranei
U32]
Length = 182
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 100/164 (60%), Gaps = 6/164 (3%)
Query: 16 DSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D RG+FS+T+ ++ +G+ D FVQD+ S S G +RG+H R +AKLVRC G
Sbjct: 22 DQRGFFSRTFDRDVVASVGIDPDGFVQDSLSRSRK-GVVRGMHL-RGGAGEAKLVRCSHG 79
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
IFD+ VD+R +SPT+ + E+S N + +YIP G AHGF +L ++V Y++ +
Sbjct: 80 AIFDVVVDLRPDSPTFRNVKTFELSGENQVSVYIPAGCAHGFQSLTDPSDVSYRIDRAHD 139
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
E D ++++D +DI+WPL T+ VS++D+ P L + P
Sbjct: 140 PEEDITISYKDPELDISWPLSVTM---VSDRDERAPSLEEALKP 180
>gi|254559532|ref|YP_003066627.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
DM4]
gi|254266810|emb|CAX22609.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
DM4]
Length = 177
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 87/155 (56%), Gaps = 3/155 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F++T E GL F Q + SF+ GT+RG+HF + P+A+ KLVRC G
Sbjct: 21 DERGFFARTQCESEFAERGLVGHFTQSSVSFNHRRGTVRGMHFWKLPHAETKLVRCTGGA 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
I D +D+R +SPTY S+ +SA N +YIP G AHGF TL +TE++Y + +
Sbjct: 81 IHDAVIDLRPDSPTYLRTASVMLSAANRHALYIPAGLAHGFQTLSDDTEILYMIDRPFVA 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
GV W D + + WP T+ ++ +D P
Sbjct: 141 SAADGVRWDDPAFGLAWPEPVTV---IAPRDLAFP 172
>gi|296169862|ref|ZP_06851476.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295895539|gb|EFG75239.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 190
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 92/165 (55%), Gaps = 3/165 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+ S+++ + GL Q N F++ GT+RGLH + PPYAQ +LVRC G
Sbjct: 21 DHRGFSSRSFCADEFASRGLAFDVTQTNIFFNYTRGTVRGLHHRVPPYAQTQLVRCTRGA 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
I +AVDIR S TYG +E+SA+N +++P AHGF TL NTEV Y+V+ +
Sbjct: 81 IAAVAVDIRPGSQTYGDHAMVELSADNYRALFLPPFVAHGFQTLVDNTEVSYQVSGASAP 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ G W D I WPL T+ +SE+D + P +P E
Sbjct: 141 SDEQGFHWNDPEFGIVWPLPVTV---ISEQDASWPSRTPSFTPIE 182
>gi|295133946|ref|YP_003584622.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Zunongwangia profunda SM-A87]
gi|294981961|gb|ADF52426.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Zunongwangia profunda SM-A87]
Length = 187
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 100/170 (58%), Gaps = 3/170 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
NIN + + DSRG+F +++++ +E GL FVQDN SFS + G +RGLH Q+
Sbjct: 7 NINGCFEINPKLIYDSRGYFYESFNAARFREKTGLNIQFVQDNQSFS-ERGVLRGLHLQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AQAKLV + G++ D+A+D+R++S T+G +S N Q++IP G AHGF+ L
Sbjct: 66 GIHAQAKLVSVLKGKVLDVAIDLRKDSETFGEVYRTLLSEENKKQLFIPRGCAHGFVVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
YK ++Y ++G+ + D+ + I W L L +S+KD LP
Sbjct: 126 ETCLFFYKCDNYYHKASEAGIIYDDEDLGIDWQLAKDELI-ISDKDLVLP 174
>gi|166363833|ref|YP_001656106.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Microcystis aeruginosa
NIES-843]
gi|166086206|dbj|BAG00914.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Microcystis aeruginosa
NIES-843]
Length = 180
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 98/186 (52%), Gaps = 11/186 (5%)
Query: 1 MNINPVRILKTRK-----FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M I RI K + ED RG F +T + K L F ++ +S S +RG
Sbjct: 1 MKITETRIPKCYEIVPTILEDKRGRFVKTLHQDIYKSHQLIINFAEEYYSVS-KKNVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LHFQ PP K+V C+ G + D+ VD+R+ SPTYG + +S+ NG IYIP+G AHG
Sbjct: 60 LHFQVPPQDCTKIVYCLEGSVMDVVVDLRKGSPTYGEFELFNLSSENGKIIYIPSGLAHG 119
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F + YKV+ YS + D+G+ W S+ I WP L IL SE+DQ+ ++
Sbjct: 120 FYVTSETAIMCYKVSTVYSPKEDTGILWN--SVVIPWPNLHPIL---SERDQSFLPFSEF 174
Query: 176 DSPFEY 181
SP Y
Sbjct: 175 RSPLVY 180
>gi|254431562|ref|ZP_05045265.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanobium sp. PCC 7001]
gi|197626015|gb|EDY38574.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanobium sp. PCC 7001]
Length = 179
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 89/169 (52%), Gaps = 7/169 (4%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKL 68
L++ F D RG F + + + Q N S + G IRGLH Q+ P +AKL
Sbjct: 16 LRSTAFTDGRGSFLNAFRLEEMHAWWGHRAVHQINVSRTERVGAIRGLHGQQGPTPEAKL 75
Query: 69 VRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128
VRC+ GR+FD+AVD+R S T G W SLE++ G IP G HGF LE +E++Y
Sbjct: 76 VRCLRGRVFDVAVDVRPGSSTRGQWRSLELTPEAGNAWLIPEGVLHGFQVLEAGSELLYV 135
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQI 175
+ Y GV W D + I WPL LD +S++DQ LP L +
Sbjct: 136 HSAPYRPGDQVGVVWNDPELAIAWPLPALD-----LSQRDQQLPLLAAL 179
>gi|222147495|ref|YP_002548452.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Agrobacterium vitis S4]
gi|221734485|gb|ACM35448.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Agrobacterium vitis S4]
Length = 187
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 94/171 (54%), Gaps = 3/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + +L +F D RG+ S+ + + L G +Q N + + GT+RGLHFQ P
Sbjct: 12 IPGLTLLTRSRFGDERGFLSRLFCGEELAAFGWPGPVLQVNETGTVQKGTVRGLHFQHAP 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ + KLV C+ G I D+A+D+R+ S ++ V +E+S +N + IP GFAHGF L
Sbjct: 72 FGEWKLVTCVEGTILDVALDLRKGSSSFLQHVCVELSGDNCRSLLIPPGFAHGFQALSDT 131
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+IY + Y E + G+ QD I ITWPL + +S +DQ+ P +
Sbjct: 132 VRMIYTHSAPYRAEAEGGLHPQDARIGITWPL---PVERLSARDQSHPLIQ 179
>gi|187934909|ref|YP_001887609.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum B str.
Eklund 17B]
gi|187723062|gb|ACD24283.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum B str.
Eklund 17B]
Length = 195
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 96/168 (57%), Gaps = 2/168 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V +++ F+D +G+ ++ Y+ K + G+ +FVQ+ F G ++G+HFQ+
Sbjct: 9 MDGVYVIEPGVFKDEKGYCTEMYNKKQFLKAGINMIFVQE-FEFESKKGMLKGIHFQKQ- 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q L++ G F +AVD+R S T+G W S ++ N Q+YIP GFAHGF+TL
Sbjct: 67 HNQGSLIKVTKGEGFIVAVDLRYGSLTFGKWESFILNEENKKQVYIPEGFAHGFLTLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
YK T+FY E + G+ W D I+I WPL +SE+D+ P
Sbjct: 127 AIFNYKCTEFYDPEDNGGIMWNDPDINIKWPLEKIENVILSERDKLYP 174
>gi|2828670|gb|AAC00178.1| putative dTDP-4-dehydrorhamnose 3,5 epimerase [Serratia marcescens]
Length = 177
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 94/159 (59%), Gaps = 3/159 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V++++ + F D RG+F +T+ +EL G+ FVQDNHS S G +RGLHFQ
Sbjct: 7 QVEGVKLIEPKVFGDQRGFFLETFQKSRYQELLGIDAEFVQDNHSRSAR-GVLRGLHFQT 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G ++D+ VDIR SPT+ V + +S N Q+++P G AHGF+ +
Sbjct: 66 AK-PQGKLVRVVRGEVYDVVVDIRPESPTFKKRVGVYLSEENKNQLWVPPGLAHGFVVVS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL 159
+ + YK TD+Y ++ + W D + + WP+ + +L
Sbjct: 125 DSVDFEYKCTDYYDPSNEGCLLWNDPEVGVEWPVSEPLL 163
>gi|240137353|ref|YP_002961822.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
AM1]
gi|240007319|gb|ACS38545.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
AM1]
Length = 177
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 79/137 (57%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F++T E GL F Q + SF+ GT+RG+HF + P+A+ KLVRC G
Sbjct: 21 DERGFFARTQCESEFAERGLVGRFTQSSVSFNHRRGTVRGMHFSKLPHAETKLVRCTGGA 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
I D +D+R +SPTY S+ +SA N +YIP G AHGF TL +TE++Y + +
Sbjct: 81 IHDAVIDLRPDSPTYLRTASVTLSATNRHALYIPAGLAHGFQTLSDDTEILYMIDRPFVA 140
Query: 136 EHDSGVAWQDKSIDITW 152
GV W D + + W
Sbjct: 141 SAADGVRWDDPAFGLAW 157
>gi|86742619|ref|YP_483019.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. CcI3]
gi|86569481|gb|ABD13290.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. CcI3]
Length = 209
Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 106/195 (54%), Gaps = 6/195 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I+ F D+RG F++T+ + GL Q + +++ GT+RG+H+ P
Sbjct: 8 IAGVMIVDVEPFPDARGMFARTFCADEFAAAGLTVDVAQCSVAYNASAGTVRGMHWAGEP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ KLVRC G + D+ VD R +SPTY V++E+SA+N ++I G AHG+ TL +
Sbjct: 68 VRETKLVRCTRGALLDVVVDPRPDSPTYLRHVAVELSADNHRALFIDAGLAHGYQTLVDS 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF--E 180
TE Y++ ++ HD G+ + D + I WPL ++ +S+KD+ P L D P
Sbjct: 128 TEATYQMNVPFTPGHDRGLRFDDPRLGIVWPLPVSV---ISDKDRAWPLLAG-DGPAGPS 183
Query: 181 YDGLPLLSLNMERDL 195
D P ++RD+
Sbjct: 184 GDAAPPGPPGIQRDV 198
>gi|17550412|ref|NP_509046.1| hypothetical protein C14F11.6 [Caenorhabditis elegans]
gi|1049348|gb|AAA80364.1| Hypothetical protein C14F11.6 [Caenorhabditis elegans]
Length = 190
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 100/161 (62%), Gaps = 6/161 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
++K + F D RG+FS++Y+ ++ +++G + QDNHSFS G +RGLH Q P+
Sbjct: 25 VIKPKVFPDERGFFSESYNKTEWAEKIGYTEDLQQDNHSFSH-YGVLRGLHTQ--PH-MG 80
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL-EMNTEV 125
KLV ++G IFD+AVDIR++SPTYG W + ++ +N +IP GF HGF L + V
Sbjct: 81 KLVTVVSGEIFDVAVDIRKDSPTYGKWHGVVLNGDNKHAFWIPAGFLHGFQVLSKEGAHV 140
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK + Y + + G+ D+ I++ WP+ D + VSE+D
Sbjct: 141 TYKCSAVYDPKTEFGINPFDEDINVDWPIRDKTVVIVSERD 181
>gi|158312645|ref|YP_001505153.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EAN1pec]
gi|158108050|gb|ABW10247.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EAN1pec]
Length = 189
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 96/170 (56%), Gaps = 3/170 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V I+ F D RG F++T+ + GL+ Q + +++ GTIRGLH+ P
Sbjct: 8 IDGVTIVDVEAFSDDRGLFARTFCQEEFAAAGLEVAVAQCSVAYNRRAGTIRGLHWAGEP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ KLVRC G + D+ VD R S TY V++E++A+N ++I G AHG+ TL +
Sbjct: 68 VRETKLVRCTRGALLDVIVDSRPGSATYLEHVAVELTADNHRALFIAAGLAHGYQTLVDD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
TE Y++ ++ HD G+ + D + I WPL ++ +SEKD+ P L
Sbjct: 128 TEATYQMNVPFTPGHDRGLRFDDPRLGIAWPLPVSV---ISEKDRGWPLL 174
>gi|152964540|ref|YP_001360324.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Kineococcus radiotolerans
SRS30216]
gi|151359057|gb|ABS02060.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Kineococcus radiotolerans
SRS30216]
Length = 181
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 90/151 (59%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V I++ + D RG+F++++ + E GL Q N SF+ GT+RG+H Q
Sbjct: 7 HIEGVAIIELEERADDRGFFARSFCREEFLEAGLNPAVEQCNLSFNHKAGTLRGMHTQVD 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P +AKLVRC AG I DI VD+R +SPT V++E++A N +Y+P FAHG++TL
Sbjct: 67 PAPEAKLVRCTAGAIQDIIVDLRPDSPTRFQHVAVELTAANRRALYVPEYFAHGYLTLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW 152
EV Y+V+ Y+ + G+ W D + + W
Sbjct: 127 GAEVTYQVSQSYTPGTERGLRWDDPDLALPW 157
>gi|91793899|ref|YP_563550.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella denitrificans
OS217]
gi|91715901|gb|ABE55827.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella denitrificans
OS217]
Length = 191
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 99/189 (52%), Gaps = 15/189 (7%)
Query: 1 MNINPVRILKTRKFE-----DSRGWFSQTYSSK-----LLKELGLQDVFVQDNHSFSFDC 50
MN P I + F+ D RG+F +T+ K L+ VQDN S S
Sbjct: 1 MNCQPTTIPEVLLFKPTLHGDERGFFMETFRQKEFDACLMANGMAATPLVQDNVSRSHR- 59
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPT 110
+RGLHFQ + Q KLVR G IFD+AVDIR S T+G WV +SA N LQ++IPT
Sbjct: 60 HVLRGLHFQEH-HPQGKLVRVSQGEIFDVAVDIRPQSATFGHWVGHILSAENRLQMWIPT 118
Query: 111 GFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
GFAHGF L +++YK +D+Y + + W D + I WPL P +S KD N
Sbjct: 119 GFAHGFYVLSDIADIVYKCSDYYQSHDERVIPWNDPQLAIDWPL--EAEPILSIKD-NPQ 175
Query: 171 FLNQIDSPF 179
F Q +P
Sbjct: 176 FFCQASNPL 184
>gi|288921330|ref|ZP_06415612.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EUN1f]
gi|288347304|gb|EFC81599.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EUN1f]
Length = 185
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 98/170 (57%), Gaps = 3/170 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V I+ F D+RG F++T+ + GL+ Q + +++ GT+RG+H+ P
Sbjct: 8 VDGVTIVDVEAFTDARGLFARTFCADEFAAAGLEVSVAQCSVAYNRLAGTVRGMHWAGEP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ KLVRC G + D+ VD R SPTY V++E++A+N ++I G AHG+ TL +
Sbjct: 68 VRETKLVRCTRGALLDVVVDTRPGSPTYLEHVAVELTADNHRALFISAGLAHGYQTLVDD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
TE Y++ ++ HD G+ + D + I WPL ++ +S+KD+ P L
Sbjct: 128 TEATYQMNVPFTPGHDRGLRFDDPRLGIAWPLPVSV---ISDKDRAWPLL 174
>gi|251781241|ref|ZP_04824157.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243081688|gb|EES47749.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 195
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V +++ F+D +G+ ++ Y+ K + G+ +FVQ+ F G ++G+HFQ+
Sbjct: 9 IDGVYVIEPGVFKDEKGYCTEMYNKKQFLKAGINMIFVQE-FEFESKKGMLKGIHFQKQN 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q L++ G F +AVD+R S T+G W S ++ N Q+YIP GFAHGF+TL
Sbjct: 68 -NQGSLIKVTKGEGFIVAVDLRYGSTTFGKWESFILNEENKKQVYIPEGFAHGFLTLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
YK T+ Y E + G+ W D I+I WPL +SEKD+ P
Sbjct: 127 ATFNYKCTEIYDPEDNWGIMWNDPDINIKWPLEKIENVILSEKDKLYP 174
>gi|87307565|ref|ZP_01089709.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Blastopirellula marina DSM
3645]
gi|87289735|gb|EAQ81625.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Blastopirellula marina DSM
3645]
Length = 176
Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 91/152 (59%), Gaps = 3/152 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ R F+D RG F +T+ ++ + + D FVQDN S S +RGLH+Q QAK
Sbjct: 2 LIEPRVFQDERGEFFETFQAERYRGITSVD-FVQDNFSHSKQ-SVLRGLHYQIE-CPQAK 58
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G IFD+AVDIR+ SP +G WV + +S+ Q+++P GFAHGF + + +VIY
Sbjct: 59 LVSVLQGEIFDVAVDIRKGSPNFGKWVGVSLSSECRKQLFVPIGFAHGFCVISESADVIY 118
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL 159
K +D Y + + W D + + WP+ +L
Sbjct: 119 KCSDVYHPPGERTIQWNDPELAVEWPIKTPLL 150
>gi|332300858|ref|YP_004442779.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas asaccharolytica
DSM 20707]
gi|332177921|gb|AEE13611.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas asaccharolytica
DSM 20707]
Length = 188
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 90/152 (59%), Gaps = 1/152 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+++ V +++ + D+RG+F++TY + +VQ+N S S G +RGLH QR
Sbjct: 8 LDLAGVYLIEPDCYGDARGYFAETYRTADFAATVSPRPWVQENESSSVR-GVLRGLHLQR 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+QAKLVRC+ G I D+ VD+RR+S TYG W S +S N Q+YIP FAHGF+ L
Sbjct: 67 GEASQAKLVRCVVGEIMDLIVDLRRDSDTYGQWRSYHLSETNHRQLYIPREFAHGFLVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITW 152
+ +YKV + Y+ E + + + D + I W
Sbjct: 127 DQAKFLYKVDNGYAPESELCIRYDDPQLAIPW 158
>gi|70607435|ref|YP_256305.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus acidocaldarius DSM
639]
gi|68568083|gb|AAY81012.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus acidocaldarius DSM
639]
Length = 184
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 106/181 (58%), Gaps = 11/181 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V +++T K+ED RG + + D VQ N+S+S G IRGLH+Q
Sbjct: 8 DIPDVLVIETDKYEDERGLLMELFKRS---NFIFIDSIVQVNYSYS-KKGVIRGLHYQLK 63
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLV I G+I+D+AVDIRR SP YG +VS EI G ++IP GFAHGF LE
Sbjct: 64 PKEQGKLVTVIDGKIYDVAVDIRRGSPWYGKFVS-EILV-PGKMLWIPPGFAHGFQALE- 120
Query: 122 NTEVIYKVT-DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
N+ V+Y ++ + +S ++G+ + D I + WP+ + P VS+KD P L + + FE
Sbjct: 121 NSHVVYFISGNDFSPPSEAGIRYDDPDIGVNWPIQN---PIVSQKDLRWPSLKECKNNFE 177
Query: 181 Y 181
Y
Sbjct: 178 Y 178
>gi|284997405|ref|YP_003419172.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
L.D.8.5]
gi|284445300|gb|ADB86802.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
L.D.8.5]
Length = 178
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 100/171 (58%), Gaps = 10/171 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V ++K + F D+RG+F + + K++G+ +Q N SFS G +RGLH+Q PP Q
Sbjct: 12 VLLIKPKVFPDNRGYFKEIFKESDFKKVGIPTP-LQINISFS-RYGVVRGLHYQLPPKEQ 69
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
K+V I G+I D+AVDIR+ P++G +VS E+S N ++IP GFAHGF LE +T V
Sbjct: 70 GKIVTVIKGKILDVAVDIRKG-PSFGKYVSAELSEYNHYMLWIPPGFAHGFQALESSTIV 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + YS H+ + + I WP+ D I +SEKD P L + +
Sbjct: 129 YFITHNEYSPTHERCINYS----MIDWPIKDII---ISEKDSKCPPLEKAE 172
>gi|228469727|ref|ZP_04054695.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas uenonis 60-3]
gi|228308746|gb|EEK17472.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas uenonis 60-3]
Length = 188
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V +++ + D+RG+F++TY + +VQ+N S S G +RGLH QR
Sbjct: 9 DLAGVYLIEPDCYGDARGYFAETYRTADFAATVAPRPWVQENESSSVR-GVLRGLHLQRG 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+QAKLVRC+ G I D+ VD+RR+S TYG W S +S N Q+YIP FAHGF+ L
Sbjct: 68 EASQAKLVRCVVGEIIDLIVDLRRDSDTYGQWRSYHLSEQNHRQLYIPREFAHGFLVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW 152
+ +YKV + Y+ E + + + D + I W
Sbjct: 128 QAKFLYKVDNGYAPESELCIRYDDPQLAIPW 158
>gi|268579719|ref|XP_002644842.1| Hypothetical protein CBG05010 [Caenorhabditis briggsae]
gi|187035274|emb|CAP25601.1| hypothetical protein CBG_05010 [Caenorhabditis briggsae AF16]
Length = 190
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 99/161 (61%), Gaps = 6/161 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
++K + F D RG+FS++Y+ ++ +++G + QDNHSFS G +RGLH Q P+
Sbjct: 25 VIKPKVFPDERGFFSESYNKTEWAEKIGYTEDLQQDNHSFSH-YGVLRGLHTQ--PH-MG 80
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL-EMNTEV 125
KLV ++G IFD+AVDIR++SPTYG W + ++ +N +IP GF HGF L + V
Sbjct: 81 KLVTVVSGEIFDVAVDIRKDSPTYGKWHGVILNGDNKHAFWIPAGFLHGFQVLSKEGAHV 140
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK + Y + + G+ D+ I++ WP+ D VSE+D
Sbjct: 141 TYKCSAVYDPKTEFGINPFDEDINVDWPIKDKASVIVSERD 181
>gi|313886441|ref|ZP_07820160.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas asaccharolytica
PR426713P-I]
gi|312924122|gb|EFR34912.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas asaccharolytica
PR426713P-I]
Length = 188
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V +++ + D+RG+F++TY + +VQ+N S S G +RGLH QR
Sbjct: 9 DLAGVYLIEPDCYGDARGYFAETYRTADFAATVSPRPWVQENESSSVR-GVLRGLHLQRG 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+QAKLVRC+ G I D+ VD+RR+S TYG W S +S N Q+YIP FAHGF+ L
Sbjct: 68 EASQAKLVRCVVGEIMDLIVDLRRDSDTYGQWRSYHLSETNHRQLYIPREFAHGFLVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW 152
+ +YKV + Y+ E + + + D + I W
Sbjct: 128 QAKFLYKVDNGYAPESELCIRYDDPQLAIPW 158
>gi|262276760|ref|ZP_06054553.1| dTDP-4-dehydrorhamnose 3,5-epimerase [alpha proteobacterium
HIMB114]
gi|262223863|gb|EEY74322.1| dTDP-4-dehydrorhamnose 3,5-epimerase [alpha proteobacterium
HIMB114]
Length = 172
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 96/161 (59%), Gaps = 10/161 (6%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
++K+ + D RG F + + +++LK+ FV D SFS IRGLHFQ+ +Q K
Sbjct: 13 LIKSNQHHDYRGHFREIHDNRVLKK-----KFVFDCMSFS-KRNVIRGLHFQKKK-SQGK 65
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
L+ + G IFD+AVD+R+NS TY + +++IS + I+IP FAHGF L N V Y
Sbjct: 66 LISVLKGEIFDVAVDLRKNSKTYKKYFAIKISEKSNFSIFIPENFAHGFFCLSKNCIVHY 125
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
K T++ + + ++ +AW D SI I WP IL S KD+N
Sbjct: 126 KCTNYRNKKTETTLAWNDPSIGIKWPKKKKIL---SPKDKN 163
>gi|148252624|ref|YP_001237209.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bradyrhizobium sp. BTAi1]
gi|146404797|gb|ABQ33303.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bradyrhizobium sp. BTAi1]
Length = 167
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 87/155 (56%), Gaps = 3/155 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++T+ + + G++ VQ N S + GT+RG+HFQR P A AKLVRC +G
Sbjct: 9 DRRGTFTRTWCASTFADHGIEFTPVQGNSSLTRKRGTVRGMHFQRAPKADAKLVRCTSGC 68
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
I D+ VDIR S T G + E+S ++G +YIP GFAHGF TL ++ V Y + Y
Sbjct: 69 IHDVIVDIREGSSTRGEVYAYELSPSSGRMLYIPAGFAHGFQTLADDSVVEYLMGIEYVA 128
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
E G D S I WP + +S+KD P
Sbjct: 129 ELSDGFRHDDPSFRIAWP---EAVSEMSDKDAAWP 160
>gi|188588831|ref|YP_001922579.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum E3 str.
Alaska E43]
gi|188499112|gb|ACD52248.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum E3 str.
Alaska E43]
Length = 195
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V I++ F+D + + ++ Y+ K + G+ +FVQ+ F G ++G+HFQ+
Sbjct: 9 MDGVYIIEPGVFKDEKEYCTEMYNKKQFLKAGINMIFVQE-FEFESKKGMLKGIHFQKQN 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q L++ G F +AVD+R S T+G W S ++ N Q+YIP GFAHGF+T+
Sbjct: 68 -NQGSLIKVTKGEGFIVAVDLRYGSTTFGKWESFILNEENKKQVYIPEGFAHGFLTISDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
YK T+FY E + G+ W D I+I WPL +SEKD+ P
Sbjct: 127 ATFNYKCTEFYDPEDNRGIMWNDPDINIKWPLEKIENVILSEKDKLYP 174
>gi|302555841|ref|ZP_07308183.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces
viridochromogenes DSM 40736]
gi|302473459|gb|EFL36552.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces
viridochromogenes DSM 40736]
Length = 183
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 95/169 (56%), Gaps = 6/169 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+ + + D RG+F +T+ + +++ +GL D FVQD+ S S G +RGLH R +A
Sbjct: 14 LFEPTPYADERGFFCRTFDADVVRSVGLAPDAFVQDSVSRSVR-GVLRGLHL-RSGKGEA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVRC G+IFD+ VD+R +SPTY S E+S +YIP G AHGF L +
Sbjct: 72 KLVRCSYGQIFDVVVDLRPDSPTYRNVASFELSGETQTTLYIPAGCAHGFQALTETADTS 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y++ + D +A+ D + I WPL T S+S +D+ P L ++
Sbjct: 132 YRIDRPHDPAEDVTIAFDDPELAIPWPLPAT---SMSRRDREAPSLAEV 177
>gi|297162967|gb|ADI12679.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces bingchenggensis
BCW-1]
Length = 183
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 94/163 (57%), Gaps = 6/163 (3%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
+ D RG+F +T+ + +++ +GL D FVQD+ S S G +RGLH R +AKLVRC
Sbjct: 20 YADERGFFCRTFDADVVRSVGLDPDAFVQDSLSRSVR-GVLRGLHL-RSGAGEAKLVRCS 77
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
GRIFD VD+R +SPTY E+S + +YIP G AHGF L +V Y++
Sbjct: 78 YGRIFDTVVDLRTDSPTYRNRAFFELSDETQVTLYIPAGCAHGFQALTETADVSYRIDRP 137
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ D +A+ D + I WPL T S+S++D+ P L ++
Sbjct: 138 HDPAEDVTIAFDDPELAIPWPLPVT---SMSQRDREAPSLAEV 177
>gi|323474312|gb|ADX84918.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus REY15A]
Length = 178
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 98/171 (57%), Gaps = 9/171 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V ++K + F D+RG+F + + K++ + +Q N SFS G +RGLH+Q PP Q
Sbjct: 12 VLLIKPKVFPDNRGYFKEIFKESDFKKMNISSP-LQVNVSFS-KAGVVRGLHYQLPPKEQ 69
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
K+V + GRI D+AVDIR+ S ++G +V E+S +N ++IP GFAHGF LE +T +
Sbjct: 70 GKIVTVLKGRIIDVAVDIRKKSKSFGKYVYAELSEDNHYMLWIPPGFAHGFQALEESTVL 129
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + YS H+ + + I WP+ I +SEKD P L + +
Sbjct: 130 YFVTHNEYSPPHERCINY----TMIDWPIKSVI---ISEKDAKCPPLEKAE 173
>gi|261208595|ref|ZP_05923032.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289567166|ref|ZP_06447557.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|260077097|gb|EEW64817.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289161052|gb|EFD08961.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
Length = 171
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 102/173 (58%), Gaps = 3/173 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M + V++ KF D RG+ + ++ L +G++ Q N FS + T+RGLH+Q
Sbjct: 1 MVVVMVKVFDIIKFSDFRGYTAVALDNETLFSIGIEFHIKQINQGFSHNKYTMRGLHYQS 60
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AQ K+V C+ G I +IA+DIR+ S TYGC +S +NG YIP G+AHG++T+E
Sbjct: 61 GEHAQGKIVMCLHGEIMNIALDIRQGSSTYGCVYVNTLSESNGKCAYIPRGYAHGYLTME 120
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
NT V + V + ++ ++++ S+DI WP+ +SEKD+N+ L+
Sbjct: 121 DNTLVQWCVDNDFNSNAAKCISYE--SVDIEWPVSRQCFV-ISEKDKNVERLS 170
>gi|58430753|dbj|BAD89171.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp.
139]
Length = 191
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 91/162 (56%), Gaps = 6/162 (3%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
F D RG+F +T+ + +++ G+ D FVQD+ S S G +RG+H R +AKLVRC
Sbjct: 20 FADERGFFCRTFDADVVRSAGIDPDAFVQDSLSRSVR-GVVRGMHL-RSGAGEAKLVRCS 77
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
+GRIFD+ VD+R SPTY + E+S +Y+P G AHGF L + Y++
Sbjct: 78 SGRIFDVVVDLRPGSPTYLGRATFELSGETQATLYVPAGCAHGFQALTETADTSYRIDRP 137
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ D +A+ D + + WPL T + SE+D+ P L +
Sbjct: 138 HDPAEDVTIAFDDPELAVPWPLPVT---TTSERDRKAPGLAE 176
>gi|302557857|ref|ZP_07310199.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces griseoflavus
Tu4000]
gi|302475475|gb|EFL38568.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces griseoflavus
Tu4000]
Length = 183
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 93/163 (57%), Gaps = 6/163 (3%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
+ D RG+F +T+ +++++ GL D FVQD+ S S G +RGLH R +AKLVRC
Sbjct: 20 YADERGFFCRTFDAEVVRSAGLDPDAFVQDSLSRSVK-GVLRGLHL-RSGEGEAKLVRCS 77
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
GRIFD+ VD+R +SPTY + E+S +Y+P G AHGF L + Y++
Sbjct: 78 YGRIFDVVVDLRPDSPTYLGRATFELSGETQATLYVPAGCAHGFQALTDTADTSYRIDRP 137
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ D +A+ D + I WPL T S+S +D+ P L ++
Sbjct: 138 HDPAEDVTIAFDDPELAIPWPLPVT---SMSRRDREAPGLAEV 177
>gi|307594677|ref|YP_003900994.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vulcanisaeta distributa DSM
14429]
gi|307549878|gb|ADN49943.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vulcanisaeta distributa DSM
14429]
Length = 188
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 108/181 (59%), Gaps = 3/181 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +++ F D RG+F++ Y G+ FVQ + S S G +RGLH+Q
Sbjct: 9 LEIPDVILVEPVVFPDVRGFFAELYKRTDFLAGGIPYDFVQVSLSKS-RRGVVRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLV I GR+ D+AVD+RR SP +G +V +E+SA+N +++P GFAHGF LE
Sbjct: 68 KPMEQGKLVTVIRGRVVDVAVDVRRGSPWFGKYVMVELSADNPRLLWVPPGFAHGFQALE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T +Y T YS +H+ VAW D I I WP+ + ++ +SEKD P L Q ++ F+
Sbjct: 128 DDTLFLYLQTKEYSPQHERCVAWNDPEIGIPWPIRENVI--ISEKDSKCPPLRQAETNFD 185
Query: 181 Y 181
Y
Sbjct: 186 Y 186
>gi|332530450|ref|ZP_08406393.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hylemonella gracilis ATCC
19624]
gi|332040110|gb|EGI76493.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hylemonella gracilis ATCC
19624]
Length = 192
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 90/153 (58%), Gaps = 4/153 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
++ ++ R D RG F++ + + L+ G + Q NHS S G +RGLH+Q+ P+ +
Sbjct: 15 LKRVQRRLRADERGVFARLFCADELRPAGWRWPIAQINHSLSRGRGLVRGLHYQQAPHQE 74
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCW----VSLEISANNGLQIYIPTGFAHGFMTLEM 121
AKLV C+ G ++D+AVD+R SPT+ W +S + S +G + IP GFAHGF L
Sbjct: 75 AKLVSCVRGEVWDVAVDLRPGSPTFLRWHAERLSPQASDTHGSALLIPPGFAHGFQVLSD 134
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
E+IY + Y+ + + G+ QD + ITWPL
Sbjct: 135 EAELIYCHSAPYAPQSEHGLPVQDARLAITWPL 167
>gi|121600544|ref|YP_992265.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei SAVP1]
gi|121229354|gb|ABM51872.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei SAVP1]
Length = 125
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 76/114 (66%), Gaps = 3/114 (2%)
Query: 53 IRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGF 112
+RGLH+Q +AQ KLVR + G +FD+AVD+RR+SP +G WV + +SA N Q+++P GF
Sbjct: 2 LRGLHYQ-IQHAQGKLVRVVDGEVFDVAVDVRRSSPNFGKWVGVRLSAENKRQLWVPAGF 60
Query: 113 AHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
AHGF+ L + + +YK TD++ E + + W DK I I WP+ P V+ KD
Sbjct: 61 AHGFVVLSESADFLYKTTDYWYPEFERSILWSDKQIGIEWPIDRE--PLVAAKD 112
>gi|224418633|ref|ZP_03656639.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Helicobacter canadensis MIT
98-5491]
gi|253826822|ref|ZP_04869707.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Helicobacter canadensis MIT
98-5491]
gi|313142158|ref|ZP_07804351.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Helicobacter canadensis MIT
98-5491]
gi|253510228|gb|EES88887.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Helicobacter canadensis MIT
98-5491]
gi|313131189|gb|EFR48806.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Helicobacter canadensis MIT
98-5491]
Length = 187
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 87/151 (57%), Gaps = 3/151 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ + + ILK F+D+RG F + +S + ++ L F + +S S G +RG+HFQ P
Sbjct: 7 DFDGLYILKRSMFKDNRGEFIKHFSEECFRQNSLDTDFKESYYSVS-KKGVLRGMHFQLP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY KLV +G+I D+ VDIR +S T+G + + +S+ +YIP GFAHGF+ LE
Sbjct: 66 PYEHTKLVYVSSGKILDVVVDIRLHSSTFGLFFKIVLSSKKSSFLYIPKGFAHGFLCLED 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW 152
NT V Y T YS HDSG+ + S W
Sbjct: 126 NTRVHYLQTSVYSKNHDSGILYD--SFGFNW 154
>gi|257882807|ref|ZP_05662460.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Enterococcus faecium
1,231,502]
gi|257818465|gb|EEV45793.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Enterococcus faecium
1,231,502]
Length = 171
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 99/168 (58%), Gaps = 3/168 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M + V++ KF D RG+ + ++ L +G++ Q N FS + T+RGLH+Q
Sbjct: 1 MVVVMVKVFDIIKFSDFRGYTAVALDNETLFSIGIEFHIKQINQGFSHNKYTMRGLHYQS 60
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AQ K+V C+ G I +IA+DIR+ S TYGC +S +NG YIP G+AHG++T+E
Sbjct: 61 GEHAQGKIVMCLHGEIMNIALDIRQGSSTYGCVYVNTLSESNGKCAYIPRGYAHGYLTME 120
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
NT V + V + ++ ++++ S+DI WP+ +SEKD+N
Sbjct: 121 DNTLVQWCVDNDFNSNAAKCISYE--SVDIEWPVSRQCFV-ISEKDKN 165
>gi|110597157|ref|ZP_01385446.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium ferrooxidans DSM
13031]
gi|110341348|gb|EAT59813.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium ferrooxidans DSM
13031]
Length = 177
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 97/175 (55%), Gaps = 9/175 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ--R 60
++ + +++ R + D RG+F +TY ++ G+ D F+QDN S S G +RG+HFQ R
Sbjct: 8 LDGLYVIEPRCYTDDRGFFLETYQETRYRKAGIADKFLQDNQSRSVK-GVLRGMHFQVKR 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P QA+L+ + G I+D+ VDIR S T+G W E+S QIY+ GFAHGF
Sbjct: 67 P---QAQLLTVLRGHIYDVCVDIRPASSTFGQWFGAELSDIGPRQIYMSPGFAHGFYVFS 123
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
++ YKVT Y + G+ W D + I WP+ P ++ +D + P L +
Sbjct: 124 DWADLHYKVTCEYDAGDEGGLFWNDPDVGIKWPMNS---PIITPRDASYPRLKDL 175
>gi|77918733|ref|YP_356548.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pelobacter carbinolicus DSM
2380]
gi|77544816|gb|ABA88378.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pelobacter carbinolicus DSM
2380]
Length = 181
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 87/164 (53%), Gaps = 6/164 (3%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F +T+ + GL + ++ S S G +RGLHFQ PP+ AKLV C+ G
Sbjct: 23 DERGSFIKTFHAPAFSRHGLCTDWREEYFSVS-QQGVLRGLHFQTPPHDHAKLVYCVGGA 81
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+ D VD+RR SP YG ++E++ + +YIP G AHGF L ++YKV+ YS
Sbjct: 82 VLDAVVDLRRESPDYGQHATIELNPDKANMLYIPAGMAHGFYVLRGPATMMYKVSTVYSP 141
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
HD G+ W S I WP + P +S +D +SPF
Sbjct: 142 GHDRGILWN--SAGIPWPDDN---PLISPRDAAFEAFCDFESPF 180
>gi|37520039|ref|NP_923416.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gloeobacter violaceus PCC
7421]
gi|35211031|dbj|BAC88411.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gloeobacter violaceus PCC
7421]
Length = 184
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 103/174 (59%), Gaps = 11/174 (6%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ--RPPY 63
V +++ +E S G+F ++Y + G+ FVQ+ S S GT+RGLH+Q RP
Sbjct: 11 VVVIEPAVYEQSCGYFFESYQRQKFAAAGISVSFVQEYRSRSAQ-GTLRGLHYQLHRP-- 67
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
QA+L + G +F +A+D+R+ SP++G + +SA N Q+++P GFAHG + L
Sbjct: 68 -QARLYTALHGELFAVAIDVRKGSPSFGQSAGVLLSAANKQQLFVPRGFAHGLLVLSQKA 126
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ-NLPFLNQID 176
E +YK +F+ + + GV W D ++ I W + + +L S +D+ NLP L++ID
Sbjct: 127 EFMYKCDEFFYPQDERGVLWSDPALGIAWRIEEPVL---SARDRCNLP-LSRID 176
>gi|302547048|ref|ZP_07299390.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces hygroscopicus
ATCC 53653]
gi|302464666|gb|EFL27759.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces himastatinicus
ATCC 53653]
Length = 183
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 97/175 (55%), Gaps = 6/175 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQR 60
I+ + + + D RG+F +T+ +++++ +GL D FVQD+ S S G +RGLH R
Sbjct: 8 EISGAYLFEPTPYADERGFFCRTFDAEVVRSVGLDPDAFVQDSLSRSVR-GVLRGLHL-R 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AKLVRC G+IFD+ VD+R +SPTY E+S +YIP G AHGF L
Sbjct: 66 SGAGEAKLVRCSYGKIFDVIVDLRTDSPTYLGRAFFELSGETQTTLYIPAGCAHGFQALT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ Y++ + D +A+ D + I WPL T S+S++D+ P L +
Sbjct: 126 ETADTSYRIDRPHDPAEDVTIAFDDPELAIPWPLPAT---SMSQRDREAPSLADV 177
>gi|15922286|ref|NP_377955.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus tokodaii str. 7]
gi|118137319|pdb|2B9U|A Chain A, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
From Sulfolobus Tokodaii
gi|118137320|pdb|2B9U|C Chain C, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
From Sulfolobus Tokodaii
gi|118137321|pdb|2B9U|D Chain D, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
From Sulfolobus Tokodaii
gi|118137322|pdb|2B9U|B Chain B, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
From Sulfolobus Tokodaii
gi|118137323|pdb|2B9U|E Chain E, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
From Sulfolobus Tokodaii
gi|118137324|pdb|2B9U|F Chain F, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
From Sulfolobus Tokodaii
gi|118137325|pdb|2B9U|G Chain G, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
From Sulfolobus Tokodaii
gi|118137326|pdb|2B9U|H Chain H, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
From Sulfolobus Tokodaii
gi|118137327|pdb|2B9U|I Chain I, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
From Sulfolobus Tokodaii
gi|118137328|pdb|2B9U|J Chain J, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
From Sulfolobus Tokodaii
gi|118137329|pdb|2B9U|K Chain K, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
From Sulfolobus Tokodaii
gi|118137330|pdb|2B9U|L Chain L, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
From Sulfolobus Tokodaii
gi|15623075|dbj|BAB67064.1| 176aa long hypothetical dTDP-4-dehydrorhamnose 3,5-epimerase
[Sulfolobus tokodaii str. 7]
Length = 176
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 104/170 (61%), Gaps = 11/170 (6%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
++K + F D RG+F + + S+ ++ + +V +Q N SFS G +RGLH+QR P Q K
Sbjct: 14 LIKPKVFPDKRGFFLEVFKSEDFTKMRIPNV-IQTNMSFS-RKGVVRGLHYQRTPKEQGK 71
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
++ GRI D+AVD+R++SPT+G +V E++ N ++IP GFAHGF LE ++ VIY
Sbjct: 72 IIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALE-DSIVIY 130
Query: 128 KVT-DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+T + YS H+ +++ I WP+ + I +S+KD P L + +
Sbjct: 131 FITHNEYSPPHERCISYS----YIDWPIKEVI---ISDKDLQCPSLEKAE 173
>gi|297191548|ref|ZP_06908946.1| epimerase [Streptomyces pristinaespiralis ATCC 25486]
gi|297150986|gb|EFH30918.1| epimerase [Streptomyces pristinaespiralis ATCC 25486]
Length = 183
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 6/163 (3%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
+ D RG F +T+ + +++ +GL + FVQD+ S S G +RGLH R +AKLVRC
Sbjct: 20 YADERGLFCRTFDADVVRSVGLDPNAFVQDSVSRSVR-GVLRGLHL-RSGAGEAKLVRCS 77
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
G IFD+ VD+R +SPTY S E+S + +YIP G AHGF L + Y++
Sbjct: 78 YGNIFDVVVDLRPHSPTYRNVASFELSGETQVTLYIPAGCAHGFQALSATADTSYRIDRR 137
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ D +A+ D + I WPL T S+S +D+ P L ++
Sbjct: 138 HDPAEDVTIAFDDPELAIAWPLPVT---SMSRRDREAPSLAEV 177
>gi|73535427|pdb|1WLT|A Chain A, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
Homologue From Sulfolobus Tokodaii
gi|73535428|pdb|1WLT|B Chain B, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
Homologue From Sulfolobus Tokodaii
Length = 196
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 104/170 (61%), Gaps = 11/170 (6%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
++K + F D RG+F + + S+ ++ + +V +Q N SFS G +RGLH+QR P Q K
Sbjct: 34 LIKPKVFPDKRGFFLEVFKSEDFTKMRIPNV-IQTNMSFS-RKGVVRGLHYQRTPKEQGK 91
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
++ GRI D+AVD+R++SPT+G +V E++ N ++IP GFAHGF LE ++ VIY
Sbjct: 92 IIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALE-DSIVIY 150
Query: 128 KVT-DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+T + YS H+ +++ I WP+ + I +S+KD P L + +
Sbjct: 151 FITHNEYSPPHERCISYS----YIDWPIKEVI---ISDKDLQCPSLEKAE 193
>gi|15828066|ref|NP_302329.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium leprae TN]
gi|221230543|ref|YP_002503959.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium leprae Br4923]
gi|4539119|emb|CAB39840.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium
leprae]
gi|13093620|emb|CAC30920.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium leprae]
gi|219933650|emb|CAR72062.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium leprae Br4923]
Length = 202
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 88/161 (54%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
DSRG F + ++ + V+ + G +RGLHF + P +QAK V C+ G
Sbjct: 20 SDSRGMFFEWLTASRFSAFTGHRLDVRQANCSVSSAGVLRGLHFAQVPPSQAKYVTCVTG 79
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+FD+ VDIR SPT+GCW S+ ++ +N IYI AHGF+ L+ N+ V+Y + Y+
Sbjct: 80 SVFDVVVDIRLGSPTFGCWTSITLNDSNRKTIYISESLAHGFLALQDNSTVMYLCSAEYN 139
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + D + I WP++D + +S++D P L+ I
Sbjct: 140 PAREHAICATDPDLAIDWPVVDGVDTHLSKRDATAPNLDDI 180
>gi|290956845|ref|YP_003488027.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces scabiei 87.22]
gi|260646371|emb|CBG69466.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces scabiei
87.22]
Length = 187
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 95/175 (54%), Gaps = 6/175 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQR 60
I+ + + + D RG+F +T+ + +++ +GL F+QD+ S S G +RGLH R
Sbjct: 8 EISGAYLFEPTPYADERGFFCRTFDADVVRSVGLDPHAFLQDSLSRSAG-GVVRGLHL-R 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AKLVRC GRIFD+ VD+R SPTY E+S +YIP G AHGF L
Sbjct: 66 SGAGEAKLVRCSYGRIFDVVVDLRPGSPTYLARAFFELSGETQTTLYIPAGCAHGFQALT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ Y++ + D +A+ D + + WPL T SVSE+D+ P L ++
Sbjct: 126 PTADTSYRIDRPHDPSEDVTIAFDDPELAVPWPLPVT---SVSERDRKAPGLAEV 177
>gi|167648878|ref|YP_001686541.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caulobacter sp. K31]
gi|167351308|gb|ABZ74043.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caulobacter sp. K31]
Length = 189
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 3/164 (1%)
Query: 13 KFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
+FED RG + G + F+Q+N S + + G IRGLHFQ +AQA++VR +
Sbjct: 26 RFEDPRGDTGPVLVDADWRAFGWRG-FIQENQSRTPNAGVIRGLHFQSGDHAQARIVRVV 84
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
G + +A+D R SPT+G ++SA G +++P G AHG LE +T V +
Sbjct: 85 QGAAYSVALDPRPESPTFGRHAGAQLSARGGTLMFVPAGLAHGLQVLEPDTIVCWATDHP 144
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
++ GV W D S I WP+ ++ SVS+ DQ LP L ++
Sbjct: 145 FTPIARGGVVWNDPSAAIAWPITASV--SVSDADQALPRLTDLE 186
>gi|149909224|ref|ZP_01897881.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Moritella sp. PE36]
gi|149807748|gb|EDM67694.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Moritella sp. PE36]
Length = 177
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 99/167 (59%), Gaps = 6/167 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I+ +++ F D RG+F +T+ + ++ LG + FVQDN+S S +RGLHFQ+
Sbjct: 7 SIDGALVIEPDVFGDERGFFMETFQAARYRDVLGGEFDFVQDNYSRS-SKNVLRGLHFQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G ++D+AVDIR SPTYG L ++A N LQ ++P G AHGF+ L
Sbjct: 66 TK-QQGKLVRVVLGDVYDVAVDIRLASPTYGQCHGLRLNAENKLQFWLPPGLAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+ YK T++Y + + W D ++I WP + P +S+KD+
Sbjct: 125 DLADFEYKCTNYYDNRDEGCLIWNDPVLNIDWPCDN---PLLSDKDK 168
>gi|303326678|ref|ZP_07357120.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio sp. 3_1_syn3]
gi|302862666|gb|EFL85598.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio sp. 3_1_syn3]
Length = 181
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 90/154 (58%), Gaps = 5/154 (3%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ-RPPYAQAKLVRCIAG 74
D RG+F +T+ + FVQDNHS S G +RG+H+Q R P Q KLVR I G
Sbjct: 21 DERGFFMETFRQNEFEAQCGPHAFVQDNHSKSRQ-GVLRGMHYQLRQP--QGKLVRAIRG 77
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+++D+AVD+R +SPT+G + + N +++P GFAHGF+ L E IYK T +Y+
Sbjct: 78 QVYDVAVDLRVSSPTFGKSFAALLDDVNHHMLWVPPGFAHGFLVLSSEAEFIYKCTTYYA 137
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+ + + W D ITWPLL L VS KD+
Sbjct: 138 PDDEYCLRWDDPVPGITWPLLAKEL-VVSAKDRE 170
>gi|307325622|ref|ZP_07604823.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces violaceusniger
Tu 4113]
gi|306888750|gb|EFN19735.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces violaceusniger
Tu 4113]
Length = 183
Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 95/174 (54%), Gaps = 6/174 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
I + + + D RG+F +T+ + +++ +GL D FVQD+ S S G +RGLH R
Sbjct: 9 ITGAYLFEPTPYADERGFFCRTFDADVVRSVGLDPDAFVQDSLSRSVR-GVLRGLHL-RS 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AKLVRC GRIFD+ D+R +SPTY E+S +YIP G AHGF L
Sbjct: 67 GAGEAKLVRCSYGRIFDVVADLRTDSPTYLGRAFFELSGETQRTLYIPAGCAHGFQALTE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ Y++ + D +A+ D + I WPL T S+S++D+ P L ++
Sbjct: 127 TADTSYRIDRPHDPAEDVTIAFDDPELAIPWPLPIT---SMSQRDREAPSLAEV 177
>gi|229578480|ref|YP_002836878.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
Y.G.57.14]
gi|229582928|ref|YP_002841327.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
Y.N.15.51]
gi|228009194|gb|ACP44956.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
Y.G.57.14]
gi|228013644|gb|ACP49405.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
Y.N.15.51]
Length = 178
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 102/174 (58%), Gaps = 15/174 (8%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V ++K + F D+RG+F + + +++ + +Q N SFS G +RGLH+Q PP Q
Sbjct: 12 VILIKPKAFPDNRGYFKEIFKESEFRKMNIPTP-LQANVSFS-KPGVVRGLHYQLPPKEQ 69
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
K+V + GRI D+AVDIR+ S ++G +V E++ +N ++IP GFAHGF LE +T V
Sbjct: 70 GKIVTVMKGRIIDVAVDIRKKSKSFGKYVYAELNEDNHYMLWIPPGFAHGFQALEDST-V 128
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDIT---WPLLDTILPSVSEKDQNLPFLNQID 176
+Y VT H+ ++ ++ I+ T WP+ I VSEKD P L + +
Sbjct: 129 LYFVT------HNEYSSYHERCINYTMIDWPIKSVI---VSEKDAKCPPLERAE 173
>gi|227829530|ref|YP_002831309.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
L.S.2.15]
gi|227455977|gb|ACP34664.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
L.S.2.15]
Length = 178
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 98/171 (57%), Gaps = 9/171 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V ++K + F D+RG+F + + +++ + +Q N SFS G +RGLH+Q PP Q
Sbjct: 12 VILIKPKAFPDNRGYFKEIFKESEFRKMNIPTP-LQANISFS-KPGVVRGLHYQLPPKEQ 69
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
K+V + GRI D+AVDIR+ S ++G +V E++ +N ++IP GFAHGF LE +T +
Sbjct: 70 GKIVTVMKGRIIDVAVDIRKKSKSFGKYVYAELNEDNHYMLWIPPGFAHGFQALEDSTVL 129
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + YS H+ + + I WP+ I VSEKD P L + +
Sbjct: 130 YFVTHNEYSPHHERCINY----TMIDWPIKSVI---VSEKDAKCPPLERAE 173
>gi|170586408|ref|XP_001897971.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brugia malayi]
gi|158594366|gb|EDP32950.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Brugia malayi]
Length = 188
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 98/176 (55%), Gaps = 8/176 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ +++++ + F D+RG+F ++Y+ L LG + F QDNHS+S CG +RGLH Q
Sbjct: 13 QIDGLKLIRPKLFPDTRGYFVESYNEYELGALGFSEKFKQDNHSYS-KCGVLRGLHAQP- 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL-E 120
KLV I+G I+D+AVDIR S T+G W + + +IP GF HGF L E
Sbjct: 71 --GMGKLVSVISGEIYDVAVDIRSMSKTFGKWYGVVLDEKTRTAFWIPDGFLHGFYVLSE 128
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD---QNLPFLN 173
V YK T Y+ + + GV D + I W + ++ +S++D QNL L+
Sbjct: 129 EGAHVTYKCTAIYNEQVEFGVNPFDPELAIDWHISNSYKLIISDRDRSHQNLKCLS 184
>gi|254774045|ref|ZP_05215561.1| hypothetical protein MaviaA2_05144 [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 190
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 97/179 (54%), Gaps = 3/179 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I+ D RG+ +++ ++ GL Q N F++ GT+RGLH P
Sbjct: 7 KVAGVTIIDLELRRDHRGFTWRSFCARDFAAHGLNLDVAQTNIVFNYTRGTVRGLHRTVP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+A+A L+RC G I AVD+R +S TYG V +E++A++ +++P AHGF TL
Sbjct: 67 PHAEATLLRCTRGAIVAAAVDVRPDSLTYGDHVMIELTADDHRTLFLPPYVAHGFQTLVD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+TEV Y + ++ + G+ W D +TWP+ T+ +SE+D + P +P E
Sbjct: 127 DTEVTYHTSGRHAAAEEQGLRWDDPEFGVTWPIPVTV---ISEQDASWPSAQTRLAPME 182
>gi|41407063|ref|NP_959899.1| hypothetical protein MAP0965c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41395414|gb|AAS03282.1| hypothetical protein MAP_0965c [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 190
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 97/179 (54%), Gaps = 3/179 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I+ D RG+ +++ ++ GL Q N F++ GT+RGLH P
Sbjct: 7 KVAGVTIIDLELRRDHRGFTWRSFCARDFAAHGLNLDVAQTNIVFNYTRGTVRGLHRTVP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+A+A L+RC G I AVD+R +S TYG V +E++A++ +++P AHGF TL
Sbjct: 67 PHAEATLLRCTRGAIVAAAVDVRPDSLTYGDHVMIELAADDHRTLFLPPYVAHGFQTLVD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+TEV Y + ++ + G+ W D +TWP+ T+ +SE+D + P +P E
Sbjct: 127 DTEVTYHTSGRHAAAEEQGLRWDDPEFGVTWPIPVTV---ISEQDASWPSAQTRLAPME 182
>gi|170722880|ref|YP_001750568.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida W619]
gi|169760883|gb|ACA74199.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida W619]
Length = 186
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 93/165 (56%), Gaps = 3/165 (1%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKL 68
++ ++ D+RG F++ + L LG Q NHS + G++RGLH+Q +AKL
Sbjct: 17 VQHKRHGDARGQFARLFCESSLGALGAPFHVRQINHSHTQGSGSVRGLHYQTGDTPEAKL 76
Query: 69 VRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128
+ C+ G ++D+AVD+R SPT+ W + + A +G + IP GFAHGF L + E++Y
Sbjct: 77 ITCLRGEVWDVAVDLREGSPTFLHWHAEHLRAGDGRSLLIPAGFAHGFQVLSEDAELLYL 136
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ Y+ + G++ D + I WPL + ++S +D P L+
Sbjct: 137 HSADYAPGREGGLSVLDPKLAIRWPL---AVKNLSARDAAHPLLD 178
>gi|254820400|ref|ZP_05225401.1| hypothetical protein MintA_10746 [Mycobacterium intracellulare ATCC
13950]
Length = 190
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D RG+ S+++S++ GL Q N F++ GT+RGL+ + PP+A+AKLVRC G
Sbjct: 20 HDHRGFSSRSFSARDFANHGLDFEVAQTNIYFNYTRGTVRGLYRRVPPHAEAKLVRCTRG 79
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
I +AVD+R +S T+G V +++SA++ +++P A+GF T +TEV + V+ Y+
Sbjct: 80 AIAAVAVDVRPDSLTHGDHVMVQLSADDQRTLFLPPYVAYGFQTQVDDTEVTFHVSGQYA 139
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ + G+ W D I+WP+ T+ +SE+D + P +P E
Sbjct: 140 MADEQGIRWDDPEFGISWPIPVTV---ISEQDASWPSRKSRLAPVE 182
>gi|182439720|ref|YP_001827439.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|326780384|ref|ZP_08239649.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces cf. griseus
XylebKG-1]
gi|267042|sp|P29783|RMLC_STRGR RecName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; AltName:
Full=Thymidine diphospho-4-keto-rhamnose 3,5-epimerase;
AltName: Full=dTDP-4-keto-6-deoxyglucose 3,5-epimerase;
AltName: Full=dTDP-6-deoxy-D-xylo-4-hexulose
3,5-epimerase; AltName: Full=dTDP-L-rhamnose synthetase
gi|581676|emb|CAA44442.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces griseus]
gi|62896326|emb|CAH94326.1| dTDP-4-dehydrorhamnose 3,5-epimerase StrM [Streptomyces griseus
subsp. griseus]
gi|178468236|dbj|BAG22756.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|326660717|gb|EGE45563.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces cf. griseus
XylebKG-1]
Length = 200
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 96/177 (54%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ + +TR F D RG F + YS++ L+ LG Q N S S G +RG+HF
Sbjct: 4 LSVQGAWLSETRAFADDRGEFQELYSARSLRGALGYDPGVAQVNRSVSRR-GVLRGVHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P +QAK V C++G + D+ VDIR SPTY W ++ + + +Y+ G H FM L
Sbjct: 63 QLPPSQAKYVTCLSGAVLDVVVDIRTGSPTYRAWEAVRLD-DPHRSLYVEAGLGHSFMAL 121
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ V+Y + Y+ + GV D + I WP D I P +SEKD+ P + +++
Sbjct: 122 TDDAVVVYLTSQGYAAGREHGVHPLDPDLGIAWP--DGIEPVLSEKDRQAPGIAEME 176
>gi|34762800|ref|ZP_00143787.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|27887551|gb|EAA24634.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 131
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 79/121 (65%), Gaps = 5/121 (4%)
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
+HFQ+ Y+QAKL+ + G I DI +D+R+NS T+G + S+E++ N ++IP FAHG
Sbjct: 1 MHFQKREYSQAKLISILRGSILDIVIDLRKNSETFGKYFSIELNEKNKKVLFIPKNFAHG 60
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS----VSEKD-QNLP 170
F+TLE NTE+ YK +FY+ + ++G+ W D ++I W L + +SEKD +N+
Sbjct: 61 FLTLEDNTEIFYKCDNFYNPQSEAGIIWNDSDLNIEWNLKKYKINESELIISEKDKKNMS 120
Query: 171 F 171
F
Sbjct: 121 F 121
>gi|332286406|ref|YP_004418317.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Pusillimonas sp. T7-7]
gi|330430359|gb|AEC21693.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Pusillimonas sp. T7-7]
Length = 193
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 95/173 (54%), Gaps = 16/173 (9%)
Query: 6 VRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+ ++ F D RG F ++Y + + LG FVQDN S S G +RGLH+Q +
Sbjct: 11 VKRIELAVFRDDRGCFLESYQQERYAQALGDAVRFVQDNCSHSHR-GVLRGLHYQVE-HP 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISAN----------NGLQIYIPTGFAH 114
Q KLVR G IFD+AVD+R SPT+G W +S+ + +Q++IP GFAH
Sbjct: 69 QGKLVRVAQGEIFDVAVDLRPGSPTFGQWEGHTLSSAQLALPAAGTVSHIQLWIPPGFAH 128
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
GF TL V YK TD+Y ++ + W D + I WP + P +S+KD+
Sbjct: 129 GFFTLSETAMVEYKCTDYYHPGDEACLLWNDPELAIAWP---DVQPRLSDKDR 178
>gi|148824675|ref|YP_001289429.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis F11]
gi|148723202|gb|ABR07827.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis F11]
Length = 202
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 88/160 (55%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
DSRG F + + + + V+ + G +RGLHF + P +QAK V C++G
Sbjct: 21 DSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRGLHFAQLPPSQAKYVTCVSGS 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+ VDIR SPT+G W S+ + + IY+ G AHGF+ L+ N+ VIY + Y+
Sbjct: 81 VFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVIYLCSAEYNP 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + + D ++ + WPL+D PS+S++D P +
Sbjct: 141 QREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
>gi|256790051|ref|ZP_05528482.1| epimerase [Streptomyces lividans TK24]
gi|289773932|ref|ZP_06533310.1| epimerase [Streptomyces lividans TK24]
gi|289704131|gb|EFD71560.1| epimerase [Streptomyces lividans TK24]
Length = 183
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 95/172 (55%), Gaps = 6/172 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
I+ + + D+RG+F +T+ + +++ +GL FVQD+ S S G +RGLH R
Sbjct: 8 EISGAYLFRPTPHADARGFFCRTFDADVVRSVGLDPAAFVQDSVSRSVR-GVLRGLHL-R 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AKLVRC GRIFD VD+R +SPTY E+S +YIP G AHGF +L
Sbjct: 66 SGAGEAKLVRCSNGRIFDAVVDLRADSPTYLGRAFFELSGETQTTLYIPAGCAHGFQSLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
++V Y++ + D +A+ D + I WPL + SVS +D+ P L
Sbjct: 126 ETSDVSYRIDRAHDPAEDVTIAFDDPDLGIDWPL---PVASVSPRDREAPSL 174
>gi|296159373|ref|ZP_06842198.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. Ch1-1]
gi|295890357|gb|EFG70150.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. Ch1-1]
Length = 183
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 92/152 (60%), Gaps = 7/152 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ--RPP 62
V++++ F D G+ +++S + + +L FVQD HS + G +RGLH+Q RP
Sbjct: 13 VKLIEPEVFCDEFGFCFESFSEDEFIADLSPAFQFVQDRHSSAVH-GVLRGLHYQVQRP- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q +L+R + G +F +AVD+R NSP +G W ++SA N QI++P GFAHGF+ L
Sbjct: 71 --QGRLMRVVVGEVFGVAVDVRLNSPNFGKWCGADLSAANHRQIWVPPGFAHGFVVLSEV 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
E ++K T+++ E + + W+D I I WP+
Sbjct: 129 AECLWKTTEYWFPELERCILWRDPDIGIEWPI 160
>gi|328887228|emb|CCA60467.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces venezuelae ATCC
10712]
Length = 183
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 91/162 (56%), Gaps = 6/162 (3%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
+ D RG+F +T+ + +++ +GL FVQD+ S S G +RGLH R +AKLVRC
Sbjct: 20 YADERGFFCRTFDADVVRSVGLDPGAFVQDSVSRSVR-GVLRGLHL-RSGAGEAKLVRCS 77
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
GRIFD+ VD+R +SPTY + E+S +Y+P G AHGF L + Y++
Sbjct: 78 YGRIFDVVVDLRADSPTYRNVATFELSGETQRTLYVPAGCAHGFQALTDTADTSYRIDRP 137
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ D +A+ D + I WPL T S+S +D+ P L +
Sbjct: 138 HDPAEDVTIAFDDPELAIPWPLPAT---SMSPRDREAPRLAE 176
>gi|146341725|ref|YP_001206773.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Bradyrhizobium sp.
ORS278]
gi|146194531|emb|CAL78556.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase
(dTDP-4-keto-6-deoxyglucose 3,5-epimerase)
(dTDP-L-rhamnose synthetase), (rfbC-like)
[Bradyrhizobium sp. ORS278]
Length = 180
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 88/169 (52%), Gaps = 3/169 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
R+++ D RG F++T+ +K + VQ N S + GT+RG+HFQR P A
Sbjct: 11 ARLIELTVRGDERGSFTRTWCAKTFAAEEIDFQPVQGNSSVTRHRGTVRGMHFQRAPKAD 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AK+VRC AG I D+ VD+R S T G + E+ + G +YIP GFAHGF TL + V
Sbjct: 71 AKIVRCTAGLIHDVIVDVRPTSATRGEVYACELGPSTGRMLYIPAGFAHGFQTLTDDVTV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
Y + Y E G D I I WP T+L S KD P L +
Sbjct: 131 EYLMGIDYVEELSDGFRHNDPLISIKWPGPVTVL---SAKDAAWPLLAE 176
>gi|21218943|ref|NP_624722.1| epimerase [Streptomyces coelicolor A3(2)]
gi|6066681|emb|CAB58341.1| putative epimerase [Streptomyces coelicolor A3(2)]
Length = 183
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 95/172 (55%), Gaps = 6/172 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
I+ + + D+RG+F +T+ + +++ +GL FVQD+ S S G +RGLH R
Sbjct: 8 EISGAYLFRPTPHADARGFFCRTFDADVVRSVGLDPAAFVQDSVSRSVR-GVLRGLHL-R 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AKLVRC GRIFD VD+R +SPTY E+S +YIP G AHGF +L
Sbjct: 66 SGAGEAKLVRCSNGRIFDAVVDLRADSPTYLGRAFFELSGETQTTLYIPAGCAHGFQSLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
++V Y++ + D +A+ D + I WPL + SVS +D+ P L
Sbjct: 126 ETSDVSYRIDRAHDPAEDVTIAFDDPDLAIDWPL---PVASVSPRDREAPSL 174
>gi|315636134|ref|ZP_07891388.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Arcobacter butzleri JV22]
gi|315479495|gb|EFU70174.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Arcobacter butzleri JV22]
Length = 190
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 98/169 (57%), Gaps = 3/169 (1%)
Query: 15 EDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
+D+RG+ +++ + LG + F QDN S+S G IRGLH Y+Q+KLV +
Sbjct: 20 KDNRGFVYESFKKESFNNFLGFEVDFCQDNISYS-TYGVIRGLHTNTLIYSQSKLVNVLK 78
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G+I D+AVD R S ++G VS+E+++ Q++IP GF HGF L + V+ K+ ++
Sbjct: 79 GKILDVAVDFRVGSLSFGKVVSMELNSEENKQLFIPRGFLHGFSVLSKDALVMIKIDRYF 138
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
++ GV + D+ ++I W + + VSE D+NL I SPF Y+
Sbjct: 139 ALGESIGVKYDDEDLNIDWKIKKESVI-VSEADKNLLAFKDIKSPFIYN 186
>gi|254819210|ref|ZP_05224211.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium intracellulare
ATCC 13950]
Length = 209
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 88/160 (55%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
DSRG F + + K + + V+ + G +RGLHF + P +QAK V C+ G
Sbjct: 25 DSRGHFFEWLTDKGFRSFAGHRLDVRQANCSVSSAGVLRGLHFAQVPPSQAKYVTCVRGA 84
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+ VDIR SPT+G W S+ + IYI G HGF+ L+ N+ V+Y + Y+
Sbjct: 85 VFDVVVDIRVGSPTFGQWDSVLLDDTEHRTIYISEGLGHGFLALQDNSTVMYLCSAEYNP 144
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + + D ++ I WPL+D P++S++D P L+ +
Sbjct: 145 QREHTICATDPALGIDWPLVDGAPPTLSDRDAAAPSLDDV 184
>gi|237742784|ref|ZP_04573265.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 4_1_13]
gi|229430432|gb|EEO40644.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 4_1_13]
Length = 131
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 76/116 (65%), Gaps = 4/116 (3%)
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
+HFQ+ Y+QAKL+ + G I DI VD+R+NS T+G + S+E++ N ++IP FAHG
Sbjct: 1 MHFQKGEYSQAKLISILRGSILDIVVDLRKNSETFGKYFSIELNEKNKKVLFIPKNFAHG 60
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS----VSEKDQ 167
F+TLE NTE+ YK +FY+ + ++G+ W D ++I W L + +SEKD+
Sbjct: 61 FLTLEDNTEIFYKCDNFYNPQSEAGIIWDDSDLNIEWNLKKYKINESELIISEKDK 116
>gi|260206836|ref|ZP_05774327.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis K85]
gi|289576201|ref|ZP_06456428.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis K85]
gi|289540632|gb|EFD45210.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis K85]
Length = 202
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 88/160 (55%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
DSRG F + + + + V+ + G +RGLHF + P +QAK V C++G
Sbjct: 21 DSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRGLHFAQLPPSQAKYVTCVSGS 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+ VDIR SPT+G W S+ + + IY+ G AHGF+ L+ N+ V+Y + Y+
Sbjct: 81 VFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYLCSAEYNP 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + + D ++ + WPL+D PS+S++D P +
Sbjct: 141 QREHTICAADPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
>gi|254392191|ref|ZP_05007378.1| epimerase [Streptomyces clavuligerus ATCC 27064]
gi|294816487|ref|ZP_06775130.1| epimerase [Streptomyces clavuligerus ATCC 27064]
gi|326444811|ref|ZP_08219545.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces clavuligerus
ATCC 27064]
gi|197705865|gb|EDY51677.1| epimerase [Streptomyces clavuligerus ATCC 27064]
gi|294329086|gb|EFG10729.1| epimerase [Streptomyces clavuligerus ATCC 27064]
Length = 213
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 90/161 (55%), Gaps = 6/161 (3%)
Query: 16 DSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D RG+F +T+ + L + +GL FVQD+ S S G +RGLH R +AKLVRC G
Sbjct: 22 DERGFFCRTFDAGLARSVGLDPHAFVQDSVSRSAR-GVLRGLHL-RSGAGEAKLVRCSFG 79
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+IFD+ +D+R +SPTY + E+S +YIP G AHGF L + Y++ +
Sbjct: 80 KIFDVVIDLRPDSPTYRTVATFELSGETQTTLYIPAGCAHGFQALTGTADTSYRIDRPHD 139
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D +A+ D + I WPL T++ S +D+ P L ++
Sbjct: 140 PAEDVTIAFDDPELAIPWPLPVTLM---SRRDREAPSLAEV 177
>gi|218755244|ref|ZP_03534040.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis GM
1503]
gi|289763647|ref|ZP_06523025.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis GM
1503]
gi|289711153|gb|EFD75169.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis GM
1503]
Length = 205
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 88/160 (55%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
DSRG F + + + + V+ + G +RGLHF + P +QAK V C++G
Sbjct: 21 DSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRGLHFAQLPPSQAKYVTCVSGS 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+ VDIR SPT+G W S+ + + IY+ G AHGF+ L+ N+ V+Y + Y+
Sbjct: 81 VFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYLCSAEYNP 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + + D ++ + WPL+D PS+S++D P +
Sbjct: 141 QREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
>gi|325968735|ref|YP_004244927.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vulcanisaeta moutnovskia
768-28]
gi|323707938|gb|ADY01425.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vulcanisaeta moutnovskia
768-28]
Length = 202
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 106/181 (58%), Gaps = 3/181 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +++ F D RG+F++ Y G+ FVQ + S S G +RGLH+Q
Sbjct: 23 LEIPDVILVEPVVFPDIRGFFAELYKRTDFLAGGVPHDFVQVSLSKS-RRGVVRGLHYQL 81
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLV + GR+ D+AVD+RR SP +G +V +E+SA+N ++IP GFAHGF LE
Sbjct: 82 KPMEQGKLVTVVKGRVVDVAVDVRRGSPWFGKYVMVELSADNPRLLWIPPGFAHGFQALE 141
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T +Y T YS +H+ V W D I I WP+ + ++ VSEKD P L ++ F+
Sbjct: 142 DDTLFLYLQTKEYSPQHERCVVWNDPEIGIPWPIRENVI--VSEKDGKCPPLKLAETNFD 199
Query: 181 Y 181
Y
Sbjct: 200 Y 200
>gi|15610601|ref|NP_217982.1| dTDP-4-dehydrorhamnose 3,5-epimerase RmlC [Mycobacterium
tuberculosis H37Rv]
gi|15843060|ref|NP_338097.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
CDC1551]
gi|31794641|ref|NP_857134.1| dTDP-4-dehydrorhamnose 3,5-epimerase RmlC [Mycobacterium bovis
AF2122/97]
gi|121639385|ref|YP_979609.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|148663330|ref|YP_001284853.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
H37Ra]
gi|167966768|ref|ZP_02549045.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
H37Ra]
gi|215413379|ref|ZP_03422063.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
94_M4241A]
gi|215428972|ref|ZP_03426891.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
T92]
gi|215432435|ref|ZP_03430354.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
EAS054]
gi|219559533|ref|ZP_03538609.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
T17]
gi|224991881|ref|YP_002646570.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium bovis
BCG str. Tokyo 172]
gi|253800510|ref|YP_003033511.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis KZN 1435]
gi|254234056|ref|ZP_04927381.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis C]
gi|254366066|ref|ZP_04982111.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
str. Haarlem]
gi|254552569|ref|ZP_05143016.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
gi|260188520|ref|ZP_05765994.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis CPHL_A]
gi|260202648|ref|ZP_05770139.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis T46]
gi|289445065|ref|ZP_06434809.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
T46]
gi|289449169|ref|ZP_06438913.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis CPHL_A]
gi|289555735|ref|ZP_06444945.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis KZN 605]
gi|289571698|ref|ZP_06451925.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis T17]
gi|289752189|ref|ZP_06511567.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis T92]
gi|289755598|ref|ZP_06514976.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
EAS054]
gi|297636124|ref|ZP_06953904.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
KZN 4207]
gi|297733124|ref|ZP_06962242.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
KZN R506]
gi|298526949|ref|ZP_07014358.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis 94_M4241A]
gi|306777813|ref|ZP_07416150.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu001]
gi|306782531|ref|ZP_07420868.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu002]
gi|306786350|ref|ZP_07424672.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu003]
gi|306790719|ref|ZP_07429041.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu004]
gi|306795248|ref|ZP_07433550.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu005]
gi|306799437|ref|ZP_07437739.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu006]
gi|306805284|ref|ZP_07441952.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu008]
gi|306809469|ref|ZP_07446137.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu007]
gi|306969577|ref|ZP_07482238.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu009]
gi|306973931|ref|ZP_07486592.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu010]
gi|307081640|ref|ZP_07490810.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu011]
gi|307086246|ref|ZP_07495359.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu012]
gi|313660455|ref|ZP_07817335.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
KZN V2475]
gi|81668709|sp|O06330|RMLC_MYCTU RecName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; AltName:
Full=Thymidine diphospho-4-keto-rhamnose 3,5-epimerase;
AltName: Full=dTDP-4-keto-6-deoxyglucose 3,5-epimerase;
AltName: Full=dTDP-6-deoxy-D-xylo-4-hexulose
3,5-epimerase; AltName: Full=dTDP-L-rhamnose synthase
gi|40889319|pdb|1PM7|A Chain A, Rmlc (Dtdp-6-Deoxy-D-Xylo-4-Hexulose 3,5-Epimerase)
Structure From Mycobacterium Tuberculosis And Inhibitor
Design. The Apo Structure.
gi|40889320|pdb|1PM7|B Chain B, Rmlc (Dtdp-6-Deoxy-D-Xylo-4-Hexulose 3,5-Epimerase)
Structure From Mycobacterium Tuberculosis And Inhibitor
Design. The Apo Structure.
gi|118138539|pdb|2IXC|A Chain A, Rmlc M. Tuberculosis With Dtdp-Rhamnose
gi|118138540|pdb|2IXC|B Chain B, Rmlc M. Tuberculosis With Dtdp-Rhamnose
gi|118138541|pdb|2IXC|C Chain C, Rmlc M. Tuberculosis With Dtdp-Rhamnose
gi|118138542|pdb|2IXC|D Chain D, Rmlc M. Tuberculosis With Dtdp-Rhamnose
gi|2104388|emb|CAB08731.1| dTDP-4-DEHYDRORHAMNOSE 3,5-EPIMERASE RMLC
(dTDP-4-KETO-6-DEOXYGLUCOSE 3,5-EPIMERASE)
(dTDP-L-RHAMNOSE SYNTHETASE) (THYMIDINE
DIPHOSPHO-4-KETO-RHAMNOSE 3,5-EPIMERASE) [Mycobacterium
tuberculosis H37Rv]
gi|13883404|gb|AAK47911.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
CDC1551]
gi|31620238|emb|CAD95681.1| PROBABLE DTDP-4-DEHYDRORHAMNOSE 3,5-EPIMERASE RMLC
(DTDP-4-KETO-6-DEOXYGLUCOSE 3,5-EPIMERASE)
(DTDP-L-RHAMNOSE SYNTHETASE) (THYMIDINE
DIPHOSPHO-4-KETORHAMNOSE 3,5-EPIMERASE) [Mycobacterium
bovis AF2122/97]
gi|121495033|emb|CAL73519.1| Probable dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|124599585|gb|EAY58689.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis C]
gi|134151579|gb|EBA43624.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
str. Haarlem]
gi|148507482|gb|ABQ75291.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
H37Ra]
gi|224774996|dbj|BAH27802.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium bovis
BCG str. Tokyo 172]
gi|253322013|gb|ACT26616.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis KZN 1435]
gi|289417984|gb|EFD15224.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
T46]
gi|289422127|gb|EFD19328.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis CPHL_A]
gi|289440367|gb|EFD22860.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis KZN 605]
gi|289545452|gb|EFD49100.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis T17]
gi|289692776|gb|EFD60205.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis T92]
gi|289696185|gb|EFD63614.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
EAS054]
gi|298496743|gb|EFI32037.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis 94_M4241A]
gi|308213897|gb|EFO73296.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu001]
gi|308324848|gb|EFP13699.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu002]
gi|308329102|gb|EFP17953.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu003]
gi|308332910|gb|EFP21761.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu004]
gi|308336570|gb|EFP25421.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu005]
gi|308340445|gb|EFP29296.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu006]
gi|308344309|gb|EFP33160.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu007]
gi|308348200|gb|EFP37051.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu008]
gi|308352924|gb|EFP41775.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu009]
gi|308356767|gb|EFP45618.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu010]
gi|308360712|gb|EFP49563.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu011]
gi|308364327|gb|EFP53178.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu012]
gi|323717949|gb|EGB27138.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis CDC1551A]
gi|328460241|gb|AEB05664.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis KZN 4207]
Length = 202
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 88/160 (55%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
DSRG F + + + + V+ + G +RGLHF + P +QAK V C++G
Sbjct: 21 DSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRGLHFAQLPPSQAKYVTCVSGS 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+ VDIR SPT+G W S+ + + IY+ G AHGF+ L+ N+ V+Y + Y+
Sbjct: 81 VFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYLCSAEYNP 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + + D ++ + WPL+D PS+S++D P +
Sbjct: 141 QREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
>gi|157736946|ref|YP_001489629.1| putative hexose epimerase [Arcobacter butzleri RM4018]
gi|157698800|gb|ABV66960.1| putative hexose epimerase [Arcobacter butzleri RM4018]
Length = 190
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 97/169 (57%), Gaps = 3/169 (1%)
Query: 15 EDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
+D+RG+ +++ + LG + F QDN S+S G IR LH Y+Q+KLV +
Sbjct: 20 KDNRGFVYESFKKESFNNFLGFEVDFCQDNISYSM-YGVIRALHTNTLNYSQSKLVNVLK 78
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G I D+AVD R S ++G VS+E+++ Q++IP GF HGF L + V+ KV ++
Sbjct: 79 GEILDVAVDFRVGSASFGKVVSIELNSEENKQLFIPRGFLHGFSVLSKDALVMIKVDRYF 138
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
+++ GV + D+ ++I W + + VSE D+NL +SPF Y+
Sbjct: 139 ALDESIGVRYNDEDLNIDWKIKKESVI-VSEADKNLLAFKDTNSPFMYN 186
>gi|215447804|ref|ZP_03434556.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
T85]
gi|289759628|ref|ZP_06519006.1| dtdp-4-dehydrorhamnose 3,5-epimerase rmlc [Mycobacterium
tuberculosis T85]
gi|294995761|ref|ZP_06801452.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
210]
gi|289715192|gb|EFD79204.1| dtdp-4-dehydrorhamnose 3,5-epimerase rmlc [Mycobacterium
tuberculosis T85]
gi|326905311|gb|EGE52244.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis W-148]
Length = 202
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 88/160 (55%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
DSRG F + + + + V+ + G +RGLHF + P +QAK V C++G
Sbjct: 21 DSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRGLHFAQLPPSQAKYVTCVSGS 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+ VDIR SPT+G W S+ + + IY+ G AHGF+ L+ N+ V+Y + Y+
Sbjct: 81 VFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSDGLAHGFLALQDNSTVMYLCSAEYNP 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + + D ++ + WPL+D PS+S++D P +
Sbjct: 141 QREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
>gi|322381305|ref|ZP_08055308.1| hypothetical protein PL1_0219 [Paenibacillus larvae subsp. larvae
B-3650]
gi|321154881|gb|EFX47152.1| hypothetical protein PL1_0219 [Paenibacillus larvae subsp. larvae
B-3650]
Length = 119
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 75/115 (65%), Gaps = 3/115 (2%)
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
+H+Q PPY +AKLV+CI G ++D+ +D+R S TY ++ ++ N+G +YIP GFAHG
Sbjct: 1 MHYQHPPYGEAKLVQCIRGELYDVIIDLRPLSKTYRQTFAVHLAGNSGTMLYIPEGFAHG 60
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
F TL+ TEV+Y ++ Y E +G+ W D S I WPL I +SE+D++ P
Sbjct: 61 FQTLQDETEVLYYMSSPYKPEAAAGIRWNDPSFSIVWPLDVKI---ISERDRHYP 112
>gi|297199641|ref|ZP_06917038.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sviceus ATCC
29083]
gi|197713431|gb|EDY57465.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sviceus ATCC
29083]
Length = 197
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 92/175 (52%), Gaps = 4/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQ 59
++I+ + + + F D RG F + + + + E + Q N S S GT+RG+HF
Sbjct: 4 LSISGAWVFEPKVFPDGRGSFHEWFKAPVFAEAAGHSLGLAQANMSVS-SRGTLRGIHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V+C+ G + D+ VDIR SPT+G W + + + +Y+ G HGFM L
Sbjct: 63 DVPPGQAKYVKCVRGAVLDVIVDIRVGSPTFGQWEIVRLDDQDHHAVYLSEGLGHGFMAL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ V+Y ++ Y+ E + G+ D I I WP D + P +S KD+ P L +
Sbjct: 123 TDDATVVYLCSEGYAPEREHGIHPLDPEIGIEWP--DGVAPLLSPKDEQAPTLAE 175
>gi|38493079|pdb|1UPI|A Chain A, Mycobacterium Tuberculosis Rmlc Epimerase (Rv3465)
Length = 225
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 88/160 (55%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
DSRG F + + + + V+ + G +RGLHF + P +QAK V C++G
Sbjct: 41 DSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRGLHFAQLPPSQAKYVTCVSGS 100
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+ VDIR SPT+G W S+ + + IY+ G AHGF+ L+ N+ V+Y + Y+
Sbjct: 101 VFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYLXSAEYNP 160
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + + D ++ + WPL+D PS+S++D P +
Sbjct: 161 QREHTIXATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 200
>gi|329940085|ref|ZP_08289367.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces
griseoaurantiacus M045]
gi|329300911|gb|EGG44807.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces
griseoaurantiacus M045]
Length = 185
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 93/169 (55%), Gaps = 6/169 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+ + + D RG+F +T+ + +L+ +GL FVQD+ S S G +RG+H R +A
Sbjct: 14 LFRPTPYADERGFFCRTFDADVLRSVGLDPHAFVQDSLSRSAR-GVLRGMHL-RSGAGEA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVRC +G++FD+ VD+R +SPTY E+S +Y+P G AHGF L +
Sbjct: 72 KLVRCSSGKVFDVVVDLRPDSPTYLGRAFFELSGETQETLYVPAGCAHGFQALTATADTS 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y++ + D + + D + I WPL T SVS +D+ P L ++
Sbjct: 132 YRIDRPHDPAEDVTIRYDDPELAIPWPLPVT---SVSPRDREAPGLAEV 177
>gi|323525586|ref|YP_004227739.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. CCGE1001]
gi|323382588|gb|ADX54679.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. CCGE1001]
Length = 183
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 95/164 (57%), Gaps = 9/164 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ--RPP 62
V++++ F D G+ +++S+ + + ++ FVQD H + G +RGLH+Q RP
Sbjct: 13 VKLIEPEVFGDESGFCYESFSADEFVDDVARGFDFVQDRHLRAVH-GVLRGLHYQVQRP- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q +L++ + G IFD+AVD+R NSP +G W +SA N Q+++P GFAHGF+ L
Sbjct: 71 --QGRLLQVVVGEIFDVAVDVRLNSPNFGKWCGAYLSAGNHRQVWVPPGFAHGFVVLSDV 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E ++K T+++ E + + W D I I WP+ P V KD
Sbjct: 129 AECLWKATEYWFPELERCIVWNDPDIGIEWPI--DFQPIVGAKD 170
>gi|256846110|ref|ZP_05551568.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 3_1_36A2]
gi|294784762|ref|ZP_06750050.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 3_1_27]
gi|256719669|gb|EEU33224.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 3_1_36A2]
gi|294486476|gb|EFG33838.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 3_1_27]
Length = 131
Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 79/121 (65%), Gaps = 5/121 (4%)
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
+HFQ+ Y+QAKL+ + G I DI VD+R++S T+G + S+E++ N ++IP FAHG
Sbjct: 1 MHFQKREYSQAKLISILRGSILDIVVDLRKDSETFGKYFSIELNEKNKKVLFIPKNFAHG 60
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS----VSEKD-QNLP 170
F+TLE NTE+ YK +FY+ + ++G+ W D ++I W L + +SEKD +N+
Sbjct: 61 FLTLEDNTEIFYKCDNFYNPQSEAGIIWDDSDLNIEWNLKKYKINKGKLIISEKDKKNMS 120
Query: 171 F 171
F
Sbjct: 121 F 121
>gi|302539098|ref|ZP_07291440.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp. C]
gi|302447993|gb|EFL19809.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp. C]
Length = 200
Score = 110 bits (276), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 97/177 (54%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ + +TR F D RG F + YS + L + LG Q N S S G +RG+HF
Sbjct: 4 LSVQGAWLSETRAFADGRGEFQELYSGRALGDVLGYDPGVAQANRSVSRR-GVLRGVHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P +QAK V C++G + D+ VDIR SPTY W ++ + + +YI G H F+ L
Sbjct: 63 QMPPSQAKYVTCLSGAVLDVVVDIRVGSPTYRSWEAVRLD-DPHRSLYIEAGLGHAFLAL 121
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ V+Y + Y+ + GV D ++ I WP + + P +SEKD+ P L++++
Sbjct: 122 TDDAVVVYLTSRGYAPGREHGVHPLDPALGIAWP--EDLEPVLSEKDRTAPGLDEME 176
>gi|302551386|ref|ZP_07303728.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces
viridochromogenes DSM 40736]
gi|302469004|gb|EFL32097.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces
viridochromogenes DSM 40736]
Length = 198
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 4/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I+ + + + F DSRG F + + + L E +G Q N S S GT+RG+HF
Sbjct: 5 LSISGAWVHEPKVFPDSRGSFHEWFKAPLFTEAVGHPLKLAQANMSVSAR-GTLRGIHFA 63
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V+C+ G + D+ VDIR SPT+G W + + + +Y+ G HGFM L
Sbjct: 64 DVPPSQAKYVKCVRGAVLDVVVDIRTGSPTFGQWELVRLDDRDHHALYLSEGLGHGFMAL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ V+Y ++ Y+ E + G+ D ++ I WP I P +S KD+ P L +
Sbjct: 124 TDDATVVYLCSEGYAPEREHGIQPLDPALGIDWPA--DITPLLSGKDEQAPTLAE 176
>gi|167751722|ref|ZP_02423849.1| hypothetical protein EUBSIR_02731 [Eubacterium siraeum DSM 15702]
gi|167655530|gb|EDR99659.1| hypothetical protein EUBSIR_02731 [Eubacterium siraeum DSM 15702]
gi|291531200|emb|CBK96785.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium siraeum 70/3]
gi|291557990|emb|CBL35107.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium siraeum V10Sc8a]
Length = 191
Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 100/170 (58%), Gaps = 10/170 (5%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
+D RG F++ YS ++ + G++ + ++ S+ G IR LHFQR Q KLVRCI G
Sbjct: 24 DDIRGCFTKDYSKEVFEANGIKHDLAEVFYTTSYK-GVIRALHFQREK-QQPKLVRCIHG 81
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
++D+ VD+R++SPT+ W++ E+ +I +P G AHG++ LE ++ V YK + +
Sbjct: 82 HVYDVVVDLRKDSPTFKKWLAFELIGEKHNEILVPAGCAHGYLVLE-DSIVSYKCGEKFY 140
Query: 135 VEHDSGVAWQDKSIDITWPL-----LDTILPSVSEKDQNLPFLNQIDSPF 179
E+D G+ W D I + W L +D ++ +++KD+NL + S +
Sbjct: 141 GEYDDGIMWNDPDIAVDWKLDRVGGIDKVI--LADKDKNLQTFKEFMSKY 188
>gi|296168674|ref|ZP_06850423.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295896583|gb|EFG76224.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 203
Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 88/160 (55%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
DSRG F + + E + V+ + G +RGLHF + P +QAK V C+ G
Sbjct: 22 DSRGLFFEWLTDHGFTEFAGHRLDVRQANCSVSSAGVLRGLHFAQLPPSQAKYVTCVRGS 81
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+ VDIR SPT+G W S+ + + IY+ G AHGF+ L+ ++ V+Y + Y+
Sbjct: 82 VFDVVVDIREGSPTFGQWDSVLLDDKDRRTIYLSEGLAHGFLALQDDSTVMYLCSAEYNP 141
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + + D +I + WPL++ P++S++D P ++
Sbjct: 142 QRERTICATDPAIGVDWPLVNGAAPTLSDRDAAAPMFEEV 181
>gi|240167774|ref|ZP_04746433.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium
kansasii ATCC 12478]
Length = 202
Score = 110 bits (275), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 89/160 (55%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
DSRG F + + + + V+ + G +RGLHF P +QAK V C++G
Sbjct: 21 DSRGLFFEWLTERGFSAFAGHRLDVRQANCSVSAAGVLRGLHFAELPPSQAKYVTCVSGS 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+ VDIR SPT+G W ++ + + +YI G AHGF+ L+ N+ V+Y + Y+
Sbjct: 81 VFDVVVDIRLGSPTFGRWDAVVLDDVDRRSVYISEGLAHGFLALQDNSTVMYLCSAEYNP 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + + D ++ I WPL+D + S+S++D P L ++
Sbjct: 141 QREHTICATDPTLAIDWPLVDGVAASLSDRDAAAPSLQEV 180
>gi|254456277|ref|ZP_05069706.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Pelagibacter sp.
HTCC7211]
gi|207083279|gb|EDZ60705.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Pelagibacter sp.
HTCC7211]
Length = 191
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 97/172 (56%), Gaps = 11/172 (6%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ-RPPYAQA 66
I K F+D RG+F + + K L FV D +S S +RGLH Q + P Q
Sbjct: 23 IYKRETFDDKRGYFRELFLKK-----DLNKKFVFDYYSLS-KKNVLRGLHLQLKKP--QG 74
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KL+ ++G+IFD+A+D R S T+ + ++E+S N + +YIP GFAHGF +L NT +
Sbjct: 75 KLITVLSGKIFDVALDCRPKSKTFRQFYTVELSENENISLYIPEGFAHGFCSLANNTLLH 134
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
Y+ T++ ++G+ W+DK + I WP + S +K N+ F N ++S
Sbjct: 135 YRCTNYRDKNSETGIYWKDKDLAINWPKKKFFVSSKDKK--NILFKNFLESK 184
>gi|69246547|ref|ZP_00603993.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Enterococcus faecium
DO]
gi|258616579|ref|ZP_05714349.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium DO]
gi|68195215|gb|EAN09670.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Enterococcus faecium
DO]
Length = 167
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 5/168 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V++ KF D RG+ + +++L G++ Q N FS + T+RGLH+Q +AQ
Sbjct: 2 VQVFDIMKFADFRGYTAVALDNEILSFFGIEFHIKQINQGFSHNKYTMRGLHYQSGEHAQ 61
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYG-CWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
K+V C+ G I +IA+DIR S YG +VS+ ++ NG YIP GFAHG++T+E NT
Sbjct: 62 GKIVMCLRGEIMNIALDIRPESLNYGGVYVSI-LNERNGKCAYIPRGFAHGYLTMEDNTF 120
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
V + V + ++ E V+++ SIDI WP +D +SEKD+N L
Sbjct: 121 VQWCVDNDFNAESAKCVSYE--SIDIEWP-VDQQKFIISEKDKNGDML 165
>gi|288549268|gb|ADC52828.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces
platensis]
Length = 200
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ + +TR F D RG F + YS + L LG + Q N S S G +RG+HF
Sbjct: 4 LSVKGAWLSETRAFADDRGEFQELYSGRSLSAALGYEPGVAQVNRSVSRQ-GVLRGVHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P QAK V C++G + D+ VDIR SPTY W ++ + + +Y+ G H FM L
Sbjct: 63 QVPPGQAKYVTCLSGAVLDVVVDIRTGSPTYRSWEAVRLD-DPHRSLYVEAGLGHSFMAL 121
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ V+Y + Y+ + GV D + I WP + I P +S+KDQ P + +++
Sbjct: 122 TDDAVVVYLTSQGYASGREHGVHPLDPDLAIAWP--EHIEPVLSKKDQQAPGIKEME 176
>gi|302532509|ref|ZP_07284851.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp. C]
gi|302441404|gb|EFL13220.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp. C]
Length = 183
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 94/169 (55%), Gaps = 6/169 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+ + + D RG+F +T+ + +L+ +GL FVQD+ S S G +RGLH R +A
Sbjct: 14 LFEPTPYADERGFFCRTFDADVLRSVGLDPHAFVQDSVSRSVR-GVLRGLHL-RSGAGEA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVRC G +FD+ VD+R +SPT+ E+S +Y+P G AHGF L +
Sbjct: 72 KLVRCSYGSVFDVVVDLRPDSPTFRNRAFFELSGETQATLYVPAGCAHGFQALTETADTS 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y++ + D +A+ D + I WPL T++ S++D+ P L++I
Sbjct: 132 YRIDRPHDPAEDVTIAFDDPELAIPWPLPVTLM---SQRDREAPSLSEI 177
>gi|312065238|ref|XP_003135693.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Loa loa]
gi|307769139|gb|EFO28373.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Loa loa]
Length = 194
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 97/176 (55%), Gaps = 8/176 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ +++++ + F D+RG+F ++Y+ L LG + F QDNHS+S G +RGLH Q
Sbjct: 19 QIDGLKLIRPKLFPDARGYFVESYNEYELGALGFFEKFKQDNHSYS-KSGVLRGLHAQP- 76
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL-E 120
KLV I+G+I+D+AVDIR S T+G W + + +IP GF HGF L E
Sbjct: 77 --GMGKLVSVISGKIYDVAVDIRPTSETFGKWYGVVLDERARTGFWIPDGFLHGFYVLSE 134
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD---QNLPFLN 173
V YK T Y+ + + GV D + I W + D +S++D QNL L+
Sbjct: 135 KGAHVTYKCTAIYNAQAEFGVNPFDPELAIDWRINDPSKLIISDRDRSHQNLKCLS 190
>gi|302387804|ref|YP_003823626.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Clostridium
saccharolyticum WM1]
gi|302198432|gb|ADL06003.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Clostridium
saccharolyticum WM1]
Length = 187
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 95/179 (53%), Gaps = 5/179 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ + I++ ++D RG +T+ + E GL+ F + + + IRG H+QRPP
Sbjct: 10 ISGLFIVRPHYYQDDRGSNMKTFHKETFLEKGLKCDFGETMITTNLHKNVIRGFHYQRPP 69
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q KL C+ G + +VD+R+ SPTYG + + ++ +YIP G A+ + N
Sbjct: 70 YTQCKLYYCLCGEWNNYSVDLRKGSPTYGKVICISMNEEERKLLYIPEGIANAHLIKRDN 129
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
T+V+Y++ Y +HD GV W I+ + P +++KD LP + +SPF Y
Sbjct: 130 TKVLYQLGSKYMPDHDEGVRWNSLGINFS-----VTNPIITDKDAGLPSFEEFESPFIY 183
>gi|307730225|ref|YP_003907449.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. CCGE1003]
gi|307584760|gb|ADN58158.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. CCGE1003]
Length = 183
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 95/164 (57%), Gaps = 9/164 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ--RPP 62
V++++ F D G+ +++S+ + + ++ FVQD H + G +RGLH+Q RP
Sbjct: 13 VKLIEPEVFGDESGFCYESFSADEFVDDVARGFNFVQDRHLRAVH-GVLRGLHYQVQRP- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q +L++ + G IFD+AVD+R NSP +G W +SA N Q+++P GFAHGF+ L
Sbjct: 71 --QGRLMQVVVGEIFDVAVDVRLNSPNFGKWCGAYLSAENHRQVWVPPGFAHGFVVLSDV 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E ++K T+++ E + + W D I I WP+ P V KD
Sbjct: 129 AECLWKATEYWFPELERCILWSDPDIGIEWPI--DFEPIVGPKD 170
>gi|91782843|ref|YP_558049.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia xenovorans
LB400]
gi|91686797|gb|ABE29997.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia xenovorans
LB400]
Length = 183
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 91/152 (59%), Gaps = 7/152 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ--RPP 62
V++++ F D G+ +++S + + ++ FVQD HS + G +RGLH+Q RP
Sbjct: 13 VKLIEPEVFCDEFGFCFESFSEDEFIADVSQAFQFVQDRHSSAVR-GVLRGLHYQVQRP- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q +L+R + G +F +AVD+R NSP +G W ++SA N QI++P GFAHGF+ L
Sbjct: 71 --QGRLMRVVVGEVFGVAVDVRLNSPNFGKWCGADLSAANHRQIWVPPGFAHGFVVLSDV 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
E ++K T+++ E + + W D I I WP+
Sbjct: 129 AECLWKTTEYWFPELERCILWSDPDIGIEWPI 160
>gi|85717222|ref|ZP_01048178.1| strX protein [Nitrobacter sp. Nb-311A]
gi|85695936|gb|EAQ33838.1| strX protein [Nitrobacter sp. Nb-311A]
Length = 128
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 72/115 (62%), Gaps = 3/115 (2%)
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
+H+Q PP A+ K+VRCI+G ++DI VD+R +SPT+ W +E+S N L +++P GFAHG
Sbjct: 1 MHYQLPPAAEIKIVRCISGALYDIIVDLRPDSPTFSRWFGIELSEENRLMLFVPRGFAHG 60
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
FMTL NTE Y V+ FY + G+ + D + WP +S+KD+ P
Sbjct: 61 FMTLADNTEAFYLVSAFYEPAQERGLRFDDPHFALKWPRTPV---DISDKDRAWP 112
>gi|215405504|ref|ZP_03417685.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
02_1987]
gi|289747298|ref|ZP_06506676.1| dtdp-4-dehydrorhamnose 3,5-epimerase rmlc [Mycobacterium
tuberculosis 02_1987]
gi|289687826|gb|EFD55314.1| dtdp-4-dehydrorhamnose 3,5-epimerase rmlc [Mycobacterium
tuberculosis 02_1987]
Length = 202
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 88/160 (55%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
DSRG F + + + + V+ + G +RGLHF + P +QAK V C++G
Sbjct: 21 DSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRGLHFAQLPPSQAKYVTCVSGS 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+ VDIR SPT+G W S+ + + IY+ G AHGF+ L+ N+ V+Y + Y+
Sbjct: 81 VFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYLCSAEYNP 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + + D ++ + WPL++ PS+S++D P +
Sbjct: 141 QREHTICATDPTLAVDWPLVNGAAPSLSDRDAAAPSFEDV 180
>gi|123443293|ref|YP_001007267.1| putative epimerase [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|122090254|emb|CAL13120.1| putative epimerase [Yersinia enterocolitica subsp. enterocolitica
8081]
Length = 174
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 101/169 (59%), Gaps = 6/169 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NI+ ++++ F D RG F +T+ ++ K GL+ ++ +S S + IRG+HFQ+
Sbjct: 8 LNISGCYLIESPIFSDERGEFVKTHHQEIFKNFGLEIPSAEEYYSRSKN-NVIRGMHFQQ 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P KLV C G + D+ +DIR++S TYG ++S ++ +N I++ G AHGF++++
Sbjct: 67 YPDDHNKLVFCPEGEVLDVFLDIRKDSNTYGQFMSFILNPHNRRSIFLAKGIAHGFLSMK 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
NT ++ K + +S DSG+ W S WP+ + P +S+KD+NL
Sbjct: 127 DNTLIVCKTSTVHSPSRDSGIHWN--SFGFKWPVEN---PIISDKDRNL 170
>gi|41410322|ref|NP_963158.1| RmlC [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41399156|gb|AAS06774.1| RmlC [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 201
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 86/160 (53%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG F + + K + + V+ + G +RGLHF + P +QAK V C+ G
Sbjct: 21 DARGHFFEWLTDKGFRSFAGHRLDVRQANCSVSAAGVLRGLHFAQVPLSQAKYVTCVRGS 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+ VDIR SPT+G W S+ + IYI G HGF+ L+ N+ V+Y + Y+
Sbjct: 81 VFDVVVDIRVGSPTFGQWDSVLLDDAEHRTIYISEGLGHGFLALQDNSTVMYLCSAEYNP 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + D ++ I WPL+ P++SE+D P L ++
Sbjct: 141 GREHTICATDPALGIDWPLVAGAAPTLSERDAAAPSLEEV 180
>gi|218960960|ref|YP_001740735.1| putative dTDP-6-deoxy-D-glucose-3,5-epimerase [Candidatus
Cloacamonas acidaminovorans]
gi|167729617|emb|CAO80529.1| putative dTDP-6-deoxy-D-glucose-3,5-epimerase [Candidatus
Cloacamonas acidaminovorans]
Length = 207
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F + + +L L + +++ S+S T+RGLHFQ P+AQ+K + I G
Sbjct: 41 DKRGYFLRFWDETILSAYNLPQRWCEESISYSKYKNTLRGLHFQYQPFAQSKFISLIKGY 100
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
I D+ V+I +SP YG W E+S L ++IP +AHGF+T + +IYK+ Y+
Sbjct: 101 ISDVVVNIDLDSPNYGKWQLFELSDKEPLALFIPANYAHGFVTRTEDCYLIYKMDKPYNP 160
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ G+ W DK + I W + P +S++D LN+I +
Sbjct: 161 LFEDGIIWNDKDLGINWKV---SAPILSQRDSGFKTLNEITT 199
>gi|284997190|ref|YP_003418957.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
L.D.8.5]
gi|284445085|gb|ADB86587.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
L.D.8.5]
Length = 176
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 99/171 (57%), Gaps = 9/171 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
+ ++K + F D RG+F + + S+ + + ++ VQ N SFSF G +RGLH+Q P Q
Sbjct: 12 IVLIKPKVFPDKRGFFLEVFKSEDFTKAEIPNI-VQTNMSFSFK-GVVRGLHYQITPKEQ 69
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV G+I D+AVD+R++SPT+G +V +E++ N ++IP GFAHGF LE + V
Sbjct: 70 GKLVFVPKGKILDVAVDLRKSSPTFGKYVKVELNDENHYILWIPPGFAHGFQALEDSIVV 129
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + YS + V + + WP+ + I +S+KD P L + D
Sbjct: 130 YFLTHNEYSKSDERCVNYS----YVDWPIKEFI---ISDKDSQCPPLEKAD 173
>gi|110349044|gb|ABG73088.1| RfbC [Rhizobium leguminosarum bv. trifolii TA1]
Length = 142
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 75/122 (61%), Gaps = 6/122 (4%)
Query: 77 FDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVE 136
D+ VDIR SP++G W+S E+S NG+Q+++P GFAHGF TLE N+ + YKVT YS +
Sbjct: 1 MDVVVDIREGSPSFGKWLSQELSPENGMQLWVPAGFAHGFATLEPNSVISYKVTAPYSPQ 60
Query: 137 HDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLPLLSLNMERDLL 196
HD G+AW D +I I WP + + S S+KD+ LP L + + F P+ N D
Sbjct: 61 HDRGIAWNDPAIGIRWPFDERDMVS-SDKDKTLPRLTDLQAIF-----PIQHSNPRIDRR 114
Query: 197 CV 198
C
Sbjct: 115 CA 116
>gi|302529983|ref|ZP_07282325.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp. AA4]
gi|302438878|gb|EFL10694.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp. AA4]
Length = 205
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 95/180 (52%), Gaps = 9/180 (5%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSK-LLKELGLQDVFVQDNHSFSFDCGTIR 54
M+ P+++ R F D+RG F + + +++ G Q NHS S GTIR
Sbjct: 4 MDFRPLKVSGAFEFVPRVFPDARGLFVAPFQEEAIVRAAGHPLRVAQTNHSVS-RAGTIR 62
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
G+HF P QAK V C +G + D+ VD+R SPT+G W ++ + + +Y+ G H
Sbjct: 63 GVHFADTPPGQAKYVYCPSGALLDVVVDLRAGSPTFGEWDAVRLDSAEFRAVYVAEGLGH 122
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
F+ LE +T + Y ++ Y+ + G+ D ++D+ WP + P VSEKD+ P L +
Sbjct: 123 AFVALEDDTVMAYLCSEPYNPAGEHGINPLDPALDLPWPA--DLAPIVSEKDKAAPTLAE 180
>gi|237756976|ref|ZP_04585437.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237690866|gb|EEP60013.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 108
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 69/101 (68%), Gaps = 1/101 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+I+K + F+D+RG+F + Y ++ GL FVQDNHS S G +RGLHFQ
Sbjct: 9 EIPEVKIIKPKVFKDARGFFLEFYKKSDFEKAGLNVEFVQDNHSKSVK-GVLRGLHFQEK 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANN 102
PY Q KLVRCI G+IFD+AVDIR +SP + WV++E+S N
Sbjct: 68 PYEQGKLVRCIKGKIFDVAVDIRPDSPYFKKWVAVELSEEN 108
>gi|118467223|ref|YP_883542.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium avium 104]
gi|118168510|gb|ABK69407.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium avium 104]
Length = 201
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 86/160 (53%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG F + + K + + V+ + G +RGLHF + P +QAK V C+ G
Sbjct: 21 DARGHFFEWLTDKGFRSFAGHRLDVRQANCSVSAAGVLRGLHFAQVPPSQAKYVTCVRGS 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+ VDIR SPT+G W S+ + IYI G HGF+ L+ N+ V+Y + Y+
Sbjct: 81 VFDVVVDIRVGSPTFGQWDSVLLDDAEHRTIYISEGLGHGFLALQDNSTVMYLCSAEYNP 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + D ++ I WPL+ P++SE+D P L ++
Sbjct: 141 GREHTICATDPALGIDWPLVAGAAPTLSERDAAAPSLEEV 180
>gi|291541987|emb|CBL15097.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruminococcus bromii L2-63]
Length = 190
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 98/173 (56%), Gaps = 18/173 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQ----DVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
D RG F + YS ++ + GL+ +VF +H G IR LHFQR + QAKLVRC
Sbjct: 25 DIRGAFIKDYSKEVFEANGLEHNLAEVFYTVSHK-----GVIRALHFQRV-HEQAKLVRC 78
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
I G++FD+ VD+R SPT+ W +S N ++Y+P FAHG++ LE + V YK +
Sbjct: 79 IKGKVFDVIVDLRPESPTFKKWQGFYLSEENMNELYVPEHFAHGYLVLEPSV-VSYKCGE 137
Query: 132 FYSVEHDSGVAWQDKSIDITWPL-----LDTILPSVSEKDQNLPFLNQIDSPF 179
+ E+D G+ + D + + WP ++ ++ +++KD+NL + + +
Sbjct: 138 KFYGEYDDGIMYNDPDLGVEWPFDEIGGIENLI--IADKDKNLQTFKEYEDKY 188
>gi|254776839|ref|ZP_05218355.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 201
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 86/160 (53%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG F + + K + + V+ + G +RGLHF + P +QAK V C+ G
Sbjct: 21 DARGHFFEWLTDKGFRSFAGHRLDVRQANCSVSAAGVLRGLHFAQVPPSQAKYVTCVRGS 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+ VDIR SPT+G W S+ + IYI G HGF+ L+ N+ V+Y + Y+
Sbjct: 81 VFDVVVDIRVGSPTFGQWDSVLLDDAEHRTIYISEGLGHGFLALQDNSTVMYLCSAEYNP 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + D ++ I WPL+ P++SE+D P L ++
Sbjct: 141 GREHTICATDPALGIDWPLVAGAAPTLSERDAAAPSLEEV 180
>gi|239931312|ref|ZP_04688265.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces ghanaensis ATCC
14672]
gi|291439686|ref|ZP_06579076.1| 3,5-epimerase [Streptomyces ghanaensis ATCC 14672]
gi|291342581|gb|EFE69537.1| 3,5-epimerase [Streptomyces ghanaensis ATCC 14672]
Length = 197
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 94/175 (53%), Gaps = 4/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++++ + + + F D RG F + + + + E +G Q N S S GT+RG+HF
Sbjct: 4 LSLSGAWVHEPKLFPDGRGSFHEWFKAPVFNEAVGHPLTLAQANMSVS-SRGTLRGIHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V+C+ G + D+ VDIR SPT+G W ++ + + +Y+ G HGFM L
Sbjct: 63 DVPPGQAKYVKCVRGAVLDVIVDIRTGSPTFGRWEAVRLDDRDHHAVYLSEGLGHGFMAL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ V+Y ++ Y+ E + G+ D ++ I WP + P +S KD+ P L +
Sbjct: 123 TEDATVVYLCSEGYAPEREHGIHPLDPALGIDWP--GDLTPLLSAKDEQAPTLAE 175
>gi|312194518|ref|YP_004014579.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EuI1c]
gi|311225854|gb|ADP78709.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EuI1c]
Length = 182
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 95/175 (54%), Gaps = 3/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V I+ F D RG F++T+ + GL Q + +++ GT+RGLH+
Sbjct: 7 GLDGVFIVDIEPFSDDRGLFARTFCREEFAAAGLDVDVAQCSVAYNRRAGTVRGLHWAGA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P + KLVR G + D+ VD R SPT+ V++E+SA+N ++I G AHG+ TL
Sbjct: 67 PVQETKLVRVTRGALLDVVVDTRPGSPTFLRHVAVELSADNHRALFIGAGLAHGYQTLVD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+TE Y++ + D G+ D ++ I WPL ++ +S+KD+ P L + D
Sbjct: 127 DTEASYQMNVPFRPGFDRGLRHDDPALGIAWPLPVSV---ISDKDRAWPLLGEAD 178
>gi|237718657|ref|ZP_04549138.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_2_4]
gi|229452117|gb|EEO57908.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_2_4]
Length = 189
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 97/164 (59%), Gaps = 10/164 (6%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F + Y+ + K G++ + ++ S G IR +HFQ QAKLVRCI+G
Sbjct: 25 DERGGFVKDYNIDMFKANGIEHELKEVFYTIS-KKGVIRAMHFQLVK-QQAKLVRCISGH 82
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
++D+ +D+R +SPT+G W +++ +N +YIP F HG++ LE ++ V YK + +
Sbjct: 83 VYDVIIDLRPDSPTFGKWQGFDLTGDNQKTLYIPQFFGHGYLVLE-DSVVSYKCGEVFYG 141
Query: 136 EHDSGVAWQDKSIDITWPL-----LDTILPSVSEKDQNLPFLNQ 174
E D+G+++ D + I WP ++ ++ +SEKD+NL L +
Sbjct: 142 EGDAGISYNDPDMGIVWPFDKIGGIENMI--ISEKDKNLMSLKE 183
>gi|15898723|ref|NP_343328.1| dTDP-4-dehydrorhamnose 3,5 epimerase (rfbC-2) [Sulfolobus
solfataricus P2]
gi|284173105|ref|ZP_06387074.1| dTDP-4-dehydrorhamnose 3,5 epimerase (rfbC-2) [Sulfolobus
solfataricus 98/2]
gi|13815196|gb|AAK42118.1| dTDP-4-dehydrorhamnose 3,5 epimerase (rfbC-2) [Sulfolobus
solfataricus P2]
gi|261603216|gb|ACX92819.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus solfataricus 98/2]
Length = 176
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 99/171 (57%), Gaps = 9/171 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
+ ++K + F D RG+F + + S+ + + ++ VQ N SFSF G +RGLH+Q P Q
Sbjct: 12 IVLIKPKVFPDKRGFFLEVFKSEDFTKAEIPNI-VQTNMSFSFK-GVVRGLHYQITPKEQ 69
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV G+I D+A+D+R++SPT+G +V +E++ N ++IP GFAHGF LE + V
Sbjct: 70 GKLVFVPKGKILDVALDLRKSSPTFGKYVKVELNDENHYILWIPPGFAHGFQALEDSIVV 129
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + YS + V + + WP+ + I +S+KD P L + D
Sbjct: 130 YFLTHNEYSKSDERCVNYS----YVDWPIKEFI---ISDKDSQCPPLEKAD 173
>gi|302560674|ref|ZP_07313016.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces griseoflavus
Tu4000]
gi|302478292|gb|EFL41385.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces griseoflavus
Tu4000]
Length = 197
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 4/168 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+ + + F D RG F + + + + E G Q N S S GT+RG+HF P QA
Sbjct: 11 VHEPKIFPDGRGSFHEWFKAPVFTEAAGHPLTLAQANMSVS-SRGTLRGIHFADVPPGQA 69
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
K V+C+ G + D+ VDIR SP +G W ++ + + +Y+ G HGFM L + V+
Sbjct: 70 KYVKCVRGAVLDVIVDIRTGSPAFGQWEAVRLDDRDHHAVYLSEGLGHGFMALTDDATVV 129
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
Y ++ Y+ E + G+ D ++ I WP + + P +S KD+ P L Q
Sbjct: 130 YLCSEGYAPEREHGIHPLDPALGIEWP--EGLTPLLSAKDEQAPTLAQ 175
>gi|1197642|gb|AAC60763.1| WbcA [Yersinia enterocolitica (type O:8)]
Length = 174
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 100/169 (59%), Gaps = 6/169 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NI+ ++++ F D RG F +T+ ++ K GL+ ++ +S S + IRG+HFQ+
Sbjct: 8 LNISGCYLIESPIFSDERGEFVKTHHQEIFKNFGLEIPSAEEYYSRSKN-NVIRGMHFQQ 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P KLV C G + D+ +DIR++S TYG ++S + +N I++ G AHGF++++
Sbjct: 67 YPDDHNKLVFCPEGEVLDVFLDIRKDSNTYGQFMSFISNPHNRRSIFLAKGIAHGFLSMK 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
NT ++ K + +S DSG+ W S WP+ + P +S+KD+NL
Sbjct: 127 DNTLIVCKTSTVHSPSRDSGIHWN--SFGFKWPVEN---PIISDKDRNL 170
>gi|212550817|ref|YP_002309134.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212549055|dbj|BAG83723.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 182
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 97/162 (59%), Gaps = 4/162 (2%)
Query: 16 DSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D RG+F +TY + + +G D FVQ++ S S CG +RG+H+Q+ AQAKL+ + G
Sbjct: 21 DERGYFMETYMKEEFERRVGTID-FVQESQSCSV-CGVLRGMHYQQGEAAQAKLINVLEG 78
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
I D+ VD+R++S ++G + ++E+SA N LQ +IP GFAHGF+ L + YKV + Y
Sbjct: 79 TIQDVVVDLRKDSNSFGKYETVELSAENKLQFFIPRGFAHGFLVLSEWATINYKVDNVYC 138
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + + DK ++I W + SEKD+ L +I+
Sbjct: 139 PDAERILYAGDKDVNILWDKRCELWKQ-SEKDRLGSSLREIE 179
>gi|229584466|ref|YP_002842967.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
M.16.27]
gi|228019515|gb|ACP54922.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
M.16.27]
Length = 176
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 99/171 (57%), Gaps = 9/171 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
+ ++K + F D RG+F + + S+ + + ++ VQ N SFS G +RGLH+Q P Q
Sbjct: 12 IVLIKPKVFPDKRGFFLEVFKSEDFTKAEIPNI-VQVNMSFSLK-GVVRGLHYQITPKEQ 69
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV G+I D+AVD+R++SPT+G +V +E++ N ++IP GFAHGF LE + V
Sbjct: 70 GKLVFVPKGKILDVAVDLRKSSPTFGKYVKVELNDENHYILWIPPGFAHGFQALEDSIVV 129
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + YS H+ V + + WP+ + I +S+KD P L + +
Sbjct: 130 YFLTHNEYSKSHERCVNYS----YVDWPIKEFI---ISDKDLQCPPLEKAE 173
>gi|91781102|ref|YP_556309.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia xenovorans
LB400]
gi|91693762|gb|ABE36959.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia xenovorans
LB400]
Length = 182
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 80/130 (61%), Gaps = 8/130 (6%)
Query: 39 FVQDNHSFSFDCGTIRGLHFQ--RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSL 96
FVQ+ HS S + GLH+Q RP Q KLVR + G +FD+AVD+RR SPT+G W+S
Sbjct: 47 FVQERHSVSLH-NVLCGLHYQIQRP---QGKLVRVVNGEVFDVAVDLRRWSPTFGRWISA 102
Query: 97 EISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD 156
+SA+N Q++IP GFAHGF L EV+ K T+ VEH+ + W D I I+W L +
Sbjct: 103 RLSASNCRQLWIPPGFAHGFRVLSDVAEVLCKTTERGFVEHERTLQWDDPDIAISWDLDE 162
Query: 157 TILPSVSEKD 166
P S +D
Sbjct: 163 A--PITSTRD 170
>gi|305665782|ref|YP_003862069.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Maribacter sp. HTCC2170]
gi|88710546|gb|EAR02778.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Maribacter sp. HTCC2170]
Length = 179
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 91/158 (57%), Gaps = 7/158 (4%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIR 54
M I P +I L+ FED RG F +++ + L+ LG + FVQDN S S +R
Sbjct: 1 MKITPTKIKDCLLLEPNVFEDERGSFIESFKKQNLENALGFKIDFVQDNISIS-KKWVLR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
GLHFQ Y+QAKL+ + GR+ D+ VD+R++S TYG +E+ + + ++IP G AH
Sbjct: 60 GLHFQINDYSQAKLINVVRGRVLDVVVDLRKDSATYGQHFKIELDSIDRKLLFIPKGMAH 119
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITW 152
GF++L +T YK +Y+ + G+ + D + I W
Sbjct: 120 GFLSLADDTIFSYKCDAYYNQAAEGGIFYNDPDLAIDW 157
>gi|260061272|ref|YP_003194352.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Robiginitalea biformata
HTCC2501]
gi|88785404|gb|EAR16573.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Robiginitalea biformata
HTCC2501]
Length = 154
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 99/149 (66%), Gaps = 2/149 (1%)
Query: 27 SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRN 86
+K K LGL FVQDNHS S +RGLH+Q+ +AQAKLVR + GR+ DI VD+R +
Sbjct: 7 AKFEKNLGLSVDFVQDNHSVS-SRNVLRGLHYQKGQWAQAKLVRVVRGRVRDIVVDLRTD 65
Query: 87 SPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDK 146
SPT+G V++E+S++N ++IP G AHGF++LE +T YK +Y+ + ++G+ + D
Sbjct: 66 SPTFGRHVAVELSSDNSRMLWIPKGLAHGFLSLEDDTTFCYKCDAYYNPKAEAGIRFNDP 125
Query: 147 SIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+D+ W + ++ + +S +D+ LPF +
Sbjct: 126 DLDLDWGVPESEI-KLSPRDRALPFFRML 153
>gi|15897733|ref|NP_342338.1| dTDP-4-dehydrorhamnose 3,5 epimerase (rfbC-1) [Sulfolobus
solfataricus P2]
gi|6015644|emb|CAB57471.1| dTDP-4-dehydrorhamnose 3,5-epimerase (RfbD) [Sulfolobus
solfataricus P2]
gi|13814014|gb|AAK41128.1| dTDP-4-dehydrorhamnose 3,5 epimerase (rfbC-1) [Sulfolobus
solfataricus P2]
Length = 176
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 100/171 (58%), Gaps = 9/171 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V ++K + F D RG+F + + + + + + VQ N SFS G +RGLH+Q P Q
Sbjct: 12 VLLIKPKVFPDKRGFFLELFKATDFSKHNIP-MPVQVNMSFSVR-GVVRGLHYQITPKEQ 69
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV G+I D+AVD+R++SPT+G + S E+S +N ++IP GFAHGF L+ + V
Sbjct: 70 GKLVFVPKGKILDVAVDVRKSSPTFGKYTSAELSESNHHMLWIPPGFAHGFQALDDSLVV 129
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + YS +H+ + + I WP+ + I VS+KD+ P L++ +
Sbjct: 130 YFVTHNDYSPQHERCINYS----YIEWPIKEII---VSDKDKQCPPLDKAE 173
>gi|170747686|ref|YP_001753946.1| dTDP-4-dehydrorhamnose 35-epimerase related [Methylobacterium
radiotolerans JCM 2831]
gi|170654208|gb|ACB23263.1| dTDP-4-dehydrorhamnose 35-epimerase related [Methylobacterium
radiotolerans JCM 2831]
Length = 179
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 90/174 (51%), Gaps = 6/174 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V L+ D+RG F + + L GL+ F + S S G IRG+HFQ PP+
Sbjct: 12 VLALRAPGSRDARGSFHKLMHAPSLAAAGLRTDFAEVYCSTSAR-GVIRGMHFQVPPHQH 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKLV C+ G + D+ +D+RR+SP YG V+ ++ +YIP G AHGF +
Sbjct: 71 AKLVWCLCGAVTDVVLDLRRDSPGYGRAVAFDLGEEAPAGVYIPEGCAHGFAVRSGAATL 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+Y VT ++ D+G+ W D P P++S++D+ P L+ +PF
Sbjct: 131 LYLVTSVHAPAADAGIRWDSFGFDWGIP-----HPTLSDRDRLHPGLDAFATPF 179
>gi|294673197|ref|YP_003573813.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella ruminicola 23]
gi|294473828|gb|ADE83217.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella ruminicola 23]
Length = 189
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 93/158 (58%), Gaps = 8/158 (5%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F + Y+ + K G++ + ++ S G IR +HFQ QAKLVRC++G
Sbjct: 25 DERGGFVKDYNIDMFKANGIEHELKEVFYTIS-KRGVIRAMHFQLVK-QQAKLVRCVSGH 82
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
++D+ D+R +SPT+G W ++ +N +++YIP F HG++ +E ++ V YK + +
Sbjct: 83 VYDVIADLRPDSPTFGQWRGFHLTGDNQVELYIPQYFGHGYLVIE-DSVVSYKCGEVFYG 141
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPS----VSEKDQNL 169
E DSG+ + D + I WP +D I +SEKD+NL
Sbjct: 142 EGDSGIMYNDPDLAIEWP-MDLIGGEEKLIISEKDKNL 178
>gi|170694621|ref|ZP_02885773.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia graminis C4D1M]
gi|170140503|gb|EDT08679.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia graminis C4D1M]
Length = 183
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 93/166 (56%), Gaps = 9/166 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ--RPP 62
V++++ F D G+ +++S+ + + ++ FVQD H + G +RGLH+Q RP
Sbjct: 13 VKLIEPEVFGDESGFCYESFSADEFMDDVARGFEFVQDRHLRAVH-GVLRGLHYQVQRP- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q +L++ + G IFD+ VD+R SP +G W +SA N Q+++P GFAHGF+ L
Sbjct: 71 --QGRLMQVVVGEIFDVVVDVRLKSPNFGKWCGAYLSAENHRQVWVPPGFAHGFVVLSEV 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E ++K T+++ E + + W D I I WP+ P V KD
Sbjct: 129 AECLWKATEYWFPELERCILWSDPDIGIEWPI--GFEPIVGAKDAG 172
>gi|309812174|ref|ZP_07705932.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Dermacoccus sp.
Ellin185]
gi|308433861|gb|EFP57735.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Dermacoccus sp.
Ellin185]
Length = 200
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 99/183 (54%), Gaps = 9/183 (4%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIR 54
M+I P++I + R+F D RG F + + KL + LG + VQ N S S GT+R
Sbjct: 1 MDIQPLKIDGAYVVTPRQFPDGRGVFMEGFRGDKLAEHLGHRMDVVQSNISVS-SRGTVR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
G+HF P +QAK + ++G I D VDIR SPT+G W S+ + + +Y+ G H
Sbjct: 60 GIHFADVPPSQAKYITVLSGSIIDFIVDIRVGSPTFGQWESVVLDTSERKAVYLAEGLGH 119
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
F LE ++ +Y + Y+ E + G+ D ++ +T P D I P +S KD+ P L +
Sbjct: 120 AFCALEDDSTAMYLCSAPYTPEREHGINPLDTTVGLTLP--DDIEPLLSPKDEAAPSLAE 177
Query: 175 IDS 177
++
Sbjct: 178 AEA 180
>gi|153878062|ref|ZP_02004470.1| truncated dTDP-4-dehydrorhamnose 3,5-epimerase [Beggiatoa sp. PS]
gi|152065474|gb|EDN65530.1| truncated dTDP-4-dehydrorhamnose 3,5-epimerase [Beggiatoa sp. PS]
Length = 116
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 69/118 (58%), Gaps = 4/118 (3%)
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
+HFQ+ Y Q KLV G +FD+AVDIR++SPT+G WV + +SA Q Y+P G AHG
Sbjct: 1 MHFQKQ-YPQGKLVYVTQGTVFDVAVDIRKDSPTFGKWVGITLSAEKHQQFYVPPGLAHG 59
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
F + + YK TD+Y E + + W D I I WP+ +L S KD N P+L
Sbjct: 60 FCVVSEQADFHYKCTDYYHQEDEGCIRWDDPDIGIDWPITHPLL---STKDANAPYLK 114
>gi|213962263|ref|ZP_03390526.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga sputigena
Capno]
gi|213954929|gb|EEB66248.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga sputigena
Capno]
Length = 181
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 97/179 (54%), Gaps = 8/179 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ D RG F +T+++ L + G+ + +S S + IRG+HFQ PP
Sbjct: 9 IEGVYIIENFNAFDDRGLFVKTFNTDFLNQKGIDFQINESYYSIS-NKNVIRGMHFQLPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
KLV I+G + D+ +D+R+ S TY ++S+E+S N +YIP G AHGF +LE N
Sbjct: 68 DDHQKLVYVISGSVIDVVLDLRKESKTYKQYISIELSDKNHKSVYIPKGLAHGFKSLENN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS--PF 179
T ++Y V Y+ D+G+ + S W L IL S +D + P L+ + PF
Sbjct: 128 TIMMYNVGTTYNPTSDAGIHYN--SFGFNWDLEKPIL---STRDLSFPTLDDFSTINPF 181
>gi|310778611|ref|YP_003966944.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Ilyobacter
polytropus DSM 2926]
gi|309747934|gb|ADO82596.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Ilyobacter
polytropus DSM 2926]
Length = 182
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 103/172 (59%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
++++K F+D RG + ++YS + L LG+ F++DN+ S G+IRGLH+QR +
Sbjct: 14 LKLIKMTSFKDMRGEYIKSYSYRDLSSLGIDTKFLEDNYLIS-KKGSIRGLHYQRDN-PE 71
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKL+RC+ G I DI VD+R++S TY + +S + L IP GFAHGF++L +T V
Sbjct: 72 AKLIRCLEGSIMDIVVDLRKDSDTYKKVFKIRLSRGDDLLFSIPDGFAHGFISLTDST-V 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS--VSEKDQNLPFLNQI 175
+YK +++Y + GV+ I + L + + + V+EKD++ + I
Sbjct: 131 LYKSSNYYYPKDQYGVSIFSSEIGLDKILEEENIENVIVTEKDKSHAKIRDI 182
>gi|187923456|ref|YP_001895098.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia phytofirmans
PsJN]
gi|187714650|gb|ACD15874.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia phytofirmans
PsJN]
Length = 183
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 95/164 (57%), Gaps = 9/164 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ--RPP 62
V++++ F D G+ +++S+ + + ++ VQD HS + G +RGLH+Q RP
Sbjct: 13 VKLIEPEVFCDEFGFCFESFSADEFIDDVSQAFQLVQDRHSRAVR-GVLRGLHYQVQRP- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q +L+R + G +F +AVD+R NSP +G W +SA N QI+ P GFAHGF+ L
Sbjct: 71 --QGRLMRVVVGEVFAVAVDVRLNSPNFGKWCGAYLSAANYRQIWAPPGFAHGFVVLSNF 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E ++K T+++ E + + W+D I I WP+ P++ KD
Sbjct: 129 AECLWKTTEYWFPELERCILWRDPDIGIEWPI--DFEPTLGAKD 170
>gi|111225335|ref|YP_716129.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia alni ACN14a]
gi|111152867|emb|CAJ64614.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase) (dTDP-L-rhamnose synthetase) [Frankia
alni ACN14a]
Length = 208
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 90/171 (52%), Gaps = 4/171 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+ R+ DSRG F + + S L E+ G Q NHS S GT+RG+H+ + P +QA
Sbjct: 13 VFTPRQHSDSRGTFLEWFRSDALAEVVGHPLTLSQANHSVS-RAGTLRGVHYAQVPPSQA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
K V C+ GR+ D VDIR SPT+G + ++ + + +Y+ G H FM L + +
Sbjct: 72 KYVTCVRGRVLDCVVDIRTGSPTFGTFAAVLLDDVDRRGLYVSEGLGHAFMALTDDAAIS 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
Y + Y+ + GV D + + WP D + P +SEKD P L + +S
Sbjct: 132 YLCSTPYTPGREHGVDPLDPDLALPWP--DDLTPLLSEKDAAAPSLKEAES 180
>gi|325261272|ref|ZP_08128010.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium sp. D5]
gi|324032726|gb|EGB94003.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium sp. D5]
Length = 193
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 88/158 (55%), Gaps = 11/158 (6%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELG----LQDVFVQDNHSFSFDCGTIRGL 56
+++ ++ K D RG F + YS L + G L++VF +H G IR L
Sbjct: 10 LDLEGAYLIHPFKATDIRGEFIKDYSLSLFNDNGITHNLKEVFYTVSHK-----GVIRAL 64
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
HFQR QAKLVRCI+GRI+D+ VD+R S T+ W ++ N ++ IP FAHG+
Sbjct: 65 HFQRVK-EQAKLVRCISGRIYDVIVDLRPESKTFMQWRGFNLTGENCWELLIPQHFAHGY 123
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
+ LE ++ V YK + + E+D G+ W D I + WP+
Sbjct: 124 LVLE-DSIVSYKCAEAFYWEYDDGIMWNDPDIAVDWPI 160
>gi|238560602|gb|ACR46366.1| TDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces peucetius ATCC
27952]
Length = 199
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 4/178 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQ 59
++I + + + F DSRG F + + + E + Q N S S GT+RG+HF
Sbjct: 4 LSIAGAWVHEPKIFPDSRGSFHEWFRAPEFTEAAGHGLNLAQANCSVSSR-GTLRGIHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V+C+ G + D+ VDIR SPT+G W ++ + + +Y+ G H FM L
Sbjct: 63 DVPPSQAKYVKCVRGAVLDVIVDIRVGSPTFGQWEAVRLDDADHHSVYLSEGLGHAFMAL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ V+Y ++ YS + G+ D + I WP + I P +SEKD+ P L + +
Sbjct: 123 TDDATVVYLCSEGYSPGREHGITPLDPELGIEWP--EGITPLLSEKDEAAPTLAEAKA 178
>gi|297718756|gb|ADI50280.1| sugar 3,5-epimerase [Streptomyces sp. MK730-62F2]
Length = 201
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 4/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQ 59
+ I +L+ + F D RG F + Y +E D+ Q N S S G +RG+HF
Sbjct: 4 LAIEGAWVLEPKIFPDDRGSFHEWYRGAEFREATGHDLSLAQANCSVSRR-GVLRGVHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G + D+ +DIR SPTYG W ++ + + +++ G H FM L
Sbjct: 63 DVPPGQAKYVTCVRGAVLDVVIDIRVGSPTYGTWEAVRLDDDTRHAVFLAEGLGHAFMAL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ V+Y ++ Y+ + G+ D ++ I WP + I P +S KD+ P L + +
Sbjct: 123 TDDATVVYLCSEGYAPGREHGIHPLDPALGIEWP--EGITPLLSPKDEQAPTLAEAE 177
>gi|148927818|ref|ZP_01811243.1| dTDP-4-dehydrorhamnose 3,5-epimerase [candidate division TM7
genomosp. GTL1]
gi|147886844|gb|EDK72389.1| dTDP-4-dehydrorhamnose 3,5-epimerase [candidate division TM7
genomosp. GTL1]
Length = 121
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 4/119 (3%)
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
+H+Q AQ KLVR + G +FD+AVD+R++SPT+G WV +SA+N Q+++P GF HG
Sbjct: 1 MHYQIQQ-AQGKLVRVVQGEVFDVAVDLRKSSPTFGKWVGALLSADNKHQLWVPEGFGHG 59
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ-NLPFLN 173
F+ L + E +YK TD+Y+ H+ +AW D ++ I W + P VS KD PFL+
Sbjct: 60 FVVLSDSAEFLYKTTDYYAPVHERCIAWNDPTLAIDW--RTSGEPIVSAKDALGKPFLH 116
>gi|309777800|ref|ZP_07672747.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Erysipelotrichaceae bacterium
3_1_53]
gi|308914432|gb|EFP60225.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Erysipelotrichaceae bacterium
3_1_53]
Length = 168
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 82/139 (58%), Gaps = 3/139 (2%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F + YS + ++ + + ++ S G IR +HFQ+ Q KLVRCI GR
Sbjct: 25 DDRGAFIKDYSKEAFEKNNIAYDIAEVFYTIS-KKGVIRAIHFQKV-MEQPKLVRCIKGR 82
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
I+D+ VD+R SPT+ W +S N ++ IP F HG++ LE ++ V YK + +
Sbjct: 83 IYDVIVDLRPKSPTFKQWRGFYLSEENNFELLIPKNFGHGYLVLE-DSVVSYKCAERFYG 141
Query: 136 EHDSGVAWQDKSIDITWPL 154
E+D+G+ W D++I+I WPL
Sbjct: 142 EYDTGIMWNDETININWPL 160
>gi|153806438|ref|ZP_01959106.1| hypothetical protein BACCAC_00702 [Bacteroides caccae ATCC 43185]
gi|149131115|gb|EDM22321.1| hypothetical protein BACCAC_00702 [Bacteroides caccae ATCC 43185]
Length = 189
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 93/159 (58%), Gaps = 10/159 (6%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F + Y+ L K+ G+ + ++ S G IR HFQ QAKLVRCI+G
Sbjct: 25 DERGGFVKDYNIDLFKQNGIDHELKEVFYTIS-KKGVIRATHFQLVK-QQAKLVRCISGH 82
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
++D+ VD+R +SPT+G W +++ +N +Y+P F HG++ LE ++ V YK + +
Sbjct: 83 VYDVIVDLRPDSPTFGKWQGFDLTGDNQKTLYVPQFFGHGYLVLE-DSIVSYKCGEVFYG 141
Query: 136 EHDSGVAWQDKSIDITWPL-----LDTILPSVSEKDQNL 169
E DSG+ + D I+I WP ++ + ++SEKD +L
Sbjct: 142 EGDSGIMYNDPDINIEWPFEKIGGIENL--TISEKDTHL 178
>gi|229496960|ref|ZP_04390665.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas endodontalis
ATCC 35406]
gi|229316062|gb|EEN81990.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas endodontalis
ATCC 35406]
Length = 185
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 83/152 (54%), Gaps = 1/152 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +L + F D RG F++ E F+Q+N SFS G +RGLH Q
Sbjct: 7 LEIPGVWLLTPQVFGDERGSFTEVLRFPEFAEKVSPCPFIQENESFSTR-GVLRGLHLQH 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQAKLVRCI G + D+AVD+R SPT+G V++ +S Q+YIP GFAHG++ +
Sbjct: 66 GSAAQAKLVRCIHGEVIDVAVDLRLQSPTFGRHVAVRLSGTTKQQLYIPRGFAHGYLVVS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITW 152
YKV + YS + + + + I + W
Sbjct: 126 DEAIFSYKVDNGYSPQDECHLYPFEPEIGVDW 157
>gi|284174226|ref|ZP_06388195.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus solfataricus 98/2]
gi|261603035|gb|ACX92638.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus solfataricus 98/2]
Length = 177
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 97/166 (58%), Gaps = 12/166 (7%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
+ ++K F D RG+F + Y S + + +Q N SFS G IRGLH+Q P Q
Sbjct: 12 IVLIKPTVFPDKRGFFLELYKSTDFVNIPIP---IQTNMSFSIK-GVIRGLHYQISPKEQ 67
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
K+V GRI D+AVDIR++S T+G +VS+E++ N ++IP GFAHGF LE ++ V
Sbjct: 68 GKIVFVPKGRILDVAVDIRKSSKTFGKYVSVELNEENHYLLWIPPGFAHGFQALE-DSIV 126
Query: 126 IYKVT-DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
IY +T + YS +H+ + + S WP+ + IL S+KD P
Sbjct: 127 IYFITHNQYSPKHERCINY---SYIKDWPIKEAIL---SDKDLQCP 166
>gi|86742432|ref|YP_482832.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. CcI3]
gi|86569294|gb|ABD13103.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. CcI3]
Length = 207
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 90/171 (52%), Gaps = 4/171 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+ R+ DSRG F + + S L E +G Q NHS S GT+RG+H+ + P +QA
Sbjct: 13 VFTPRQHSDSRGTFLEWFRSDALAEAVGHPLTLSQANHSVS-RAGTLRGVHYAQVPPSQA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
K V C+ GR+ D VDIR SPTYG + ++ + + +Y+ G H FM L + +
Sbjct: 72 KYVTCVHGRVLDCVVDIRVGSPTYGTFAAVVLDDVDRRGLYVAEGLGHAFMALTDDAAIS 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
Y + Y+ + GV D + + WP D + P +S+KD P L + ++
Sbjct: 132 YLCSTPYTPGREYGVHPLDPDLALPWP--DDLAPLLSDKDTAAPSLKEAEA 180
>gi|121611332|ref|YP_999139.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Verminephrobacter eiseniae
EF01-2]
gi|121555972|gb|ABM60121.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Verminephrobacter eiseniae
EF01-2]
Length = 218
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 74/116 (63%)
Query: 39 FVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEI 98
Q NHS + GT+RGLH+QRPP+A+ KLV C+ G ++D+A+D+R+ SPT+ W + +
Sbjct: 79 IAQINHSHTALRGTLRGLHYQRPPHAEGKLVSCLRGAVWDVALDLRQGSPTFLHWHAECL 138
Query: 99 SANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
SA+NG + IP GFAHGF L + E++Y ++ +G+ + + I WPL
Sbjct: 139 SADNGCALLIPPGFAHGFQALTDDAELLYCHWCAHAPAAQAGLHPLEPRLAIGWPL 194
>gi|315654769|ref|ZP_07907674.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus curtisii ATCC
51333]
gi|315490730|gb|EFU80350.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus curtisii ATCC
51333]
Length = 205
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 12/174 (6%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+ ++F D RG F + Y E+ G VQ N S S G +RG+HF P +QAK
Sbjct: 14 ITPKQFPDERGAFMEMYKMGEFAEVVGHPLNLVQANCSIS-KAGVVRGIHFAEVPPSQAK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
V C G + D AVDIR SPT+G W S+ + + IY+ G H F+ LE N+ V+Y
Sbjct: 73 YVMCPRGAVLDFAVDIRVGSPTFGQWDSVLLEGEHRRAIYLSEGLGHCFVALEDNSTVVY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWP-------LLDTILPSVSEKDQNLPFLNQ 174
++ Y+ H+ GV+ D + + WP L+ IL SEKD P L +
Sbjct: 133 LCSEGYNPGHEHGVSPVDPEVALKWPDHDLAGRPLEVIL---SEKDTAAPSLTE 183
>gi|227827252|ref|YP_002829031.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
M.14.25]
gi|238619412|ref|YP_002914237.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus M.16.4]
gi|227459047|gb|ACP37733.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
M.14.25]
gi|238380481|gb|ACR41569.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus M.16.4]
gi|323474221|gb|ADX84827.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus REY15A]
gi|323476721|gb|ADX81959.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
HVE10/4]
Length = 176
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 98/171 (57%), Gaps = 9/171 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
+ ++K + F D RG+F + + S+ + + ++ VQ N S S G +RGLH+Q P Q
Sbjct: 12 IVLIKPKVFPDKRGFFLEVFKSEDFTKAEIPNI-VQVNMSSSLK-GVVRGLHYQITPKEQ 69
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV G+I D+AVD+R++SPT+G +V +E++ N ++IP GFAHGF LE + V
Sbjct: 70 GKLVFVPKGKILDVAVDLRKSSPTFGKYVKVELNDENHYILWIPPGFAHGFQALEDSIVV 129
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + YS H+ V + + WP+ + I +S+KD P L + +
Sbjct: 130 YFLTHNEYSKSHERCVNYS----YVDWPIKEFI---ISDKDLQCPPLEKAE 173
>gi|304388865|ref|ZP_07370916.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis ATCC
13091]
gi|304337182|gb|EFM03365.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis ATCC
13091]
Length = 123
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 63/102 (61%), Gaps = 2/102 (1%)
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L E
Sbjct: 6 QGKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFCVLGDAAE 65
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
V+YK TD+Y E + + W D ++ I WPL P +S KD
Sbjct: 66 VVYKCTDYYKPEAEQVLIWNDPTVGIGWPL--QTAPLLSPKD 105
>gi|295676133|ref|YP_003604657.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. CCGE1002]
gi|295435976|gb|ADG15146.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. CCGE1002]
Length = 183
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 9/164 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQ--RPP 62
V++++ F D G+ +++S+ + Q FVQD H + G +RGLH+Q RP
Sbjct: 13 VKLIEPEVFIDEYGFCFESFSADEFSDDVAQGFNFVQDRHLRAVH-GVLRGLHYQVQRP- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q +L+R + G IFD+AVD+R NSP +G W ++ N QI++P GFAHGF+ L
Sbjct: 71 --QGRLLRVVRGEIFDVAVDVRLNSPNFGKWSGEYLNEENQRQIWVPPGFAHGFVVLSEV 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E ++K T+++ E + + W D I I WP+ P + KD
Sbjct: 129 AECVWKTTEYWFPELERCLLWSDPDIGIDWPI--DFQPILGSKD 170
>gi|87303221|ref|ZP_01086014.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. WH 5701]
gi|87282116|gb|EAQ74077.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. WH 5701]
Length = 133
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 75/125 (60%), Gaps = 6/125 (4%)
Query: 53 IRGLHFQ--RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPT 110
+RGLH+Q +P Q KLVRC G +FD+AVD+R+ SP++G WV + Q+++P
Sbjct: 2 LRGLHYQLVQP---QGKLVRCSQGSVFDVAVDVRQGSPSFGRWVGTILDDVTHHQLWVPP 58
Query: 111 GFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDT-ILPSVSEKDQNL 169
GFAHGF+ L + Y +D+Y + G+AW D ++ ITWP L + P +S KD
Sbjct: 59 GFAHGFLVLSDLADFCYLCSDYYHPLSEQGIAWNDPAVGITWPQLPAGVEPQLSAKDLAN 118
Query: 170 PFLNQ 174
P L Q
Sbjct: 119 PALAQ 123
>gi|581679|emb|CAA55578.1| dTDP-4-keto-6-deoxyglucose 3,5-epimerase [Streptomyces glaucescens]
gi|3256061|emb|CAA07389.1| StrM [Streptomyces glaucescens]
Length = 200
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 5/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I ++++R F D RG F + + L + LG Q N S S G +RG+HF
Sbjct: 4 LGIEGAWLVESRVFGDERGEFQELFRGGPLSDTLGYVPGVAQVNRSVSRK-GVVRGVHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G + D+ VDIR SP YG W ++ + + +YI G H FM L
Sbjct: 63 DVPPGQAKYVTCLRGAVLDVVVDIRAGSPAYGAWETVRLD-DPRRSVYIEAGLGHAFMAL 121
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ V+Y ++ Y+ E + V D ++ I WP I P +S KD P L +
Sbjct: 122 TDDATVVYLTSEGYAPEREHAVHPLDPALGIAWP--PGIEPVLSAKDSRAPGLEE 174
>gi|46204586|ref|ZP_00049777.2| COG1898: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Magnetospirillum magnetotacticum MS-1]
Length = 131
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 71/119 (59%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ D RG+F++T+ + GL F Q + SF+ GT+RG+HF R P+A+ K
Sbjct: 13 LVRPEPHADERGFFARTHCEEEFAGHGLIGRFAQSSVSFNHRRGTVRGMHFSREPHAETK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
LVRC +G I D VD+R SPTY + +SA N +YIP G AHGF TL TE++
Sbjct: 73 LVRCTSGAIHDAVVDLRPGSPTYLRTEQVTLSARNRHALYIPAGLAHGFQTLMDETEIL 131
>gi|312194700|ref|YP_004014761.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EuI1c]
gi|311226036|gb|ADP78891.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EuI1c]
Length = 205
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 4/171 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+ R+ DSRG F + + + L K LG Q NHS S GT+RG+H+ P +QA
Sbjct: 13 VFTPRQHTDSRGTFLEWFRADALEKALGHPLGLAQGNHSIS-RAGTLRGVHYADVPPSQA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
K V C++GR+ D +DIR SPT+G W ++++ + IY+ G H F+ L +V
Sbjct: 72 KYVTCVSGRVLDCVIDIRVGSPTFGQWAAVQLDDVDRKGIYLAEGLGHAFIALTDGAQVS 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
Y + Y+ + G+ D + + WP + P +S+KD P L + ++
Sbjct: 132 YLCSTPYTPGRERGINPLDPDLGLPWPA--DLTPLLSDKDAVAPTLKEAEA 180
>gi|297194408|ref|ZP_06911806.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces
pristinaespiralis ATCC 25486]
gi|197718783|gb|EDY62691.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces
pristinaespiralis ATCC 25486]
Length = 210
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 91/177 (51%), Gaps = 4/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I + + + F DSRG F + + K G Q N S S GT+RG+HF
Sbjct: 15 LSITGAWVHEPKIFPDSRGSFHEWFKEGDFAKAAGHGLRLAQANCSVSSR-GTLRGVHFA 73
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V+C+ G + D+ VDIR SPT+G W ++ + + +Y+ G H FM L
Sbjct: 74 DVPPSQAKYVKCVRGTVLDVVVDIRVGSPTFGKWEAVRLDDVDHRSVYLSEGLGHAFMAL 133
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ V+Y ++ Y+ E + G+ D + I WP I P +S+KD P L + +
Sbjct: 134 TDDATVVYLCSEGYAPEREHGIDPLDPGLGIEWP--QDITPVLSDKDAAAPSLAEAE 188
>gi|304388886|ref|ZP_07370935.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis ATCC
13091]
gi|304337147|gb|EFM03332.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis ATCC
13091]
Length = 117
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 67/102 (65%), Gaps = 2/102 (1%)
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L E
Sbjct: 6 QGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDEAE 65
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+YK TD+Y+ + + + W D ++ I WPL P++S KD
Sbjct: 66 FVYKCTDYYNPKAEHSLIWNDPTVGIDWPLQGE--PNLSPKD 105
>gi|256840779|ref|ZP_05546287.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Parabacteroides sp. D13]
gi|298376604|ref|ZP_06986559.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_1_19]
gi|256738051|gb|EEU51377.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Parabacteroides sp. D13]
gi|298266482|gb|EFI08140.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_1_19]
Length = 189
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 94/164 (57%), Gaps = 10/164 (6%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F + Y+ K+ G+ + ++ S G IR +HFQ QAKLVRCI+G
Sbjct: 25 DERGGFIKDYNIDAFKQNGIDHELKEVFYTIS-KKGVIRAMHFQLVK-QQAKLVRCISGH 82
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
++D+ +D+R +SPT+G W +++ N +YIP F HG++ LE ++ V YK + +
Sbjct: 83 VYDVIIDLRPDSPTFGKWQGFDLTGENQKALYIPQYFGHGYLVLE-DSVVSYKCGEVFYG 141
Query: 136 EHDSGVAWQDKSIDITWPL-----LDTILPSVSEKDQNLPFLNQ 174
E D+G+ + D + I WP ++ ++ +S+KD+NL L +
Sbjct: 142 EGDAGIMYNDPDMAIEWPFDKIGGIEKLI--ISDKDKNLMSLKE 183
>gi|300932789|ref|ZP_07148045.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium resistens DSM
45100]
Length = 241
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 3/165 (1%)
Query: 12 RKFEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
R FED RG F + + + + +LG Q N S S IRG+H P QAKLV
Sbjct: 41 RVFEDDRGSFHEAFRAEQFTDKLGYPLNIAQSNLSRS-GANVIRGIHLAEVPPGQAKLVT 99
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
C+AG + D+ VD+R SPTYG + + ++ N +++P G HG + + + Y VT
Sbjct: 100 CVAGGVTDVLVDLRIGSPTYGKHLQVPLNEQNNFALFVPLGVGHGVASEQSGATLYYLVT 159
Query: 131 DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ Y E + G+ D ++ I WP ++ +SEKD P LN++
Sbjct: 160 EAYDPEREFGLHPFDATLSIDWP-VEQATAVLSEKDSTAPGLNEV 203
>gi|255013255|ref|ZP_05285381.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_7]
Length = 188
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 94/164 (57%), Gaps = 10/164 (6%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F + Y+ K+ G+ + ++ S G IR +HFQ QAKLVRCI+G
Sbjct: 25 DERGGFIKDYNIDAFKQNGIDHELKEVFYTIS-KKGVIRAMHFQLVK-QQAKLVRCISGH 82
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
++D+ +D+R +SPT+G W +++ N +YIP F HG++ LE ++ V YK + +
Sbjct: 83 VYDVIIDLRPDSPTFGKWQGFDLTGENQKALYIPQYFGHGYLVLE-DSVVSYKCGEVFYG 141
Query: 136 EHDSGVAWQDKSIDITWPL-----LDTILPSVSEKDQNLPFLNQ 174
E D+G+ + D + I WP ++ ++ +S+KD+NL L +
Sbjct: 142 EGDAGIMYNDPDMAIEWPFGKIGGIEKLI--ISDKDKNLMSLKE 183
>gi|256829649|ref|YP_003158377.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfomicrobium baculatum
DSM 4028]
gi|256578825|gb|ACU89961.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfomicrobium baculatum
DSM 4028]
Length = 175
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 94/175 (53%), Gaps = 8/175 (4%)
Query: 1 MNINPVRILKTRKFE-----DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M I P I + E D+RG+F +T+ + G+ VQ + S + T+RG
Sbjct: 1 MRILPTPIGGLHQIEGEAHRDARGFFLRTWCREAFLAAGIDFFPVQTSLSANIRRHTLRG 60
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
+H+Q P + KLVRC+ GRI D+ VD+R SPT ++ + ++ G ++IP G AHG
Sbjct: 61 MHYQVSPARERKLVRCLHGRILDVVVDLRDGSPTRLRHWAVNLCSDAGNALFIPEGCAHG 120
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
FMTL V Y + ++ EH G+ W D ++ ++WP + +S +D++ P
Sbjct: 121 FMTLTDGALVEYMMDAPHAPEHARGLRWDDPALGLSWPARPVV---ISLRDRSWP 172
>gi|183981101|ref|YP_001849392.1| dTDP-4-dehydrorhamnose 3,5-epimerase, RmlC [Mycobacterium marinum
M]
gi|183174427|gb|ACC39537.1| dTDP-4-dehydrorhamnose 3,5-epimerase, RmlC [Mycobacterium marinum
M]
Length = 201
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Query: 16 DSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
DSRG F + + S G + Q N S S G +RGLHF P +QAK V C++G
Sbjct: 21 DSRGMFFEWLTDSGFTAFCGHRFDVRQANCSVS-SAGVLRGLHFAELPPSQAKYVTCVSG 79
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+FD+ VDIR SPT+G W S+ + + IYI G AHGF+ L+ + V+Y + Y+
Sbjct: 80 AVFDVVVDIRLGSPTFGQWDSVLLD-DRHRSIYISEGLAHGFLALQDKSTVMYMCSAEYN 138
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + + D + I WPL+D PS+SE+D L+++
Sbjct: 139 PQREHTICATDPELAIDWPLVDGAPPSLSERDAAAGSLDEV 179
>gi|301309860|ref|ZP_07215799.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 20_3]
gi|300831434|gb|EFK62065.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 20_3]
Length = 189
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 92/159 (57%), Gaps = 10/159 (6%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F + Y+ K+ G+ + ++ S G IR +HFQ QAKLVRCI+G
Sbjct: 25 DERGGFIKDYNIDAFKQNGIDHELKEVFYTIS-KKGVIRAMHFQLVK-QQAKLVRCISGH 82
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
++D+ +D+R +SPT+G W +++ N +YIP F HG++ LE ++ V YK + +
Sbjct: 83 VYDVIIDLRPDSPTFGKWQGFDLTGENQKALYIPQYFGHGYLVLE-DSVVSYKCGEVFYG 141
Query: 136 EHDSGVAWQDKSIDITWPL-----LDTILPSVSEKDQNL 169
E D+G+ + D + I WP ++ ++ +S+KD+NL
Sbjct: 142 EGDAGIMYNDPDMAIEWPFDKIGGIEKLI--ISDKDKNL 178
>gi|111022708|ref|YP_705680.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus jostii RHA1]
gi|110822238|gb|ABG97522.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus jostii RHA1]
Length = 184
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 88/158 (55%), Gaps = 7/158 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSS----KLLKELG-LQDVFVQDNHSFSFDCGTIRGL 56
+ VR+ + + D RG F++T+ + + + E G L F+QD+ S S+ G +RG+
Sbjct: 7 ELTDVRVFRPVPYRDDRGLFTRTFEAGQFDEHMSETGILAADFLQDSQSRSWR-GVVRGM 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H + P +AKLVRC G I+D+ VDIRR SPT+G + + + +Y+P GF HGF
Sbjct: 66 HGRANP-GEAKLVRCAHGAIYDVLVDIRRGSPTFGQKEAFRLDDVDFAHLYVPPGFLHGF 124
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
L +V Y++ + D VA D S+ ITWPL
Sbjct: 125 QALTEVADVCYRIDREHDPTADIAVAHDDPSLAITWPL 162
>gi|255029774|ref|ZP_05301725.1| hypothetical protein LmonL_13189 [Listeria monocytogenes LO28]
Length = 107
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 63/97 (64%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+++K + F D RG+F ++Y+ K E G+ F+QDNHS S + G +RG+H+Q P AQ
Sbjct: 11 VKLVKPKVFGDHRGFFMESYNEKAFHEAGIDMKFIQDNHSLSVEAGVLRGMHYQTNPKAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANN 102
KL+R G I+D+ VD+R+ SPTYG W +S N
Sbjct: 71 TKLIRVATGAIYDVVVDMRKGSPTYGEWEGYILSEAN 107
>gi|296137803|ref|YP_003645046.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Tsukamurella paurometabola
DSM 20162]
gi|296025937|gb|ADG76707.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Tsukamurella paurometabola
DSM 20162]
Length = 184
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 87/164 (53%), Gaps = 6/164 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSK----LLKELGLQDVFVQDNHSFSFDCGTIRGLH 57
+++ V +L D RG F++T+ ++ L G FVQD+ S S G +RGLH
Sbjct: 7 DLSDVVLLVPEPHRDQRGLFTRTFDAEEFDAHLGVPGASASFVQDSQSRSH-GGVVRGLH 65
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
R +AKLVRC G + D+ VDIR +SPT+G S + N +Y+P GF HGF
Sbjct: 66 -GRSGRGEAKLVRCAHGAVLDVLVDIRPDSPTFGRHASFRLDDENFHHLYVPPGFLHGFQ 124
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS 161
L +V Y++ + D GV + D + I+WPL T++ S
Sbjct: 125 ALTPVADVCYRIDRPHDPNEDLGVVYNDPDLAISWPLPVTVVSS 168
>gi|169630860|ref|YP_001704509.1| dTDP-4-dehydrorhamnose 3,5-epimerase RmlC [Mycobacterium abscessus
ATCC 19977]
gi|169242827|emb|CAM63855.1| DTDP-4-dehydrorhamnose 3,5-epimerase RmlC [Mycobacterium abscessus]
Length = 205
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 87/168 (51%), Gaps = 12/168 (7%)
Query: 13 KFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
+ DSRG F + + L E +G Q N S S G++RG+HF P QAK V C
Sbjct: 18 QHHDSRGVFLELFKGPALAEAIGHPFELQQANCSVSA-AGSLRGIHFADVPPGQAKYVTC 76
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
+ G ++D+ VDIR SPT+G W ++ + + +Y+P G HGF+ LE ++ V+Y +
Sbjct: 77 LTGSVYDVVVDIRVGSPTFGAWDAVLLDPRDRRAVYVPEGVGHGFLALEDDSTVVYLCSA 136
Query: 132 FYSVEHDSGVAWQDKSIDITWPLLDTILPS-------VSEKDQNLPFL 172
Y+ + G+ D ++ I WP T P VSEKD P L
Sbjct: 137 GYAPGREHGIDPLDPTVGIQWP---TRRPDGTELSLLVSEKDGAAPSL 181
>gi|158056586|emb|CAP11386.1| 3,5-epimerase [Streptomyces olivaceus]
Length = 201
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 90/180 (50%), Gaps = 9/180 (5%)
Query: 1 MNINPVRILKT-----RKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIR 54
M +NP+ I ++F D+RG F + Y ++ + E +G Q N S S G +R
Sbjct: 1 MKVNPLGIEGAWEFVPQQFGDARGLFLEWYKAERMAEAVGHPLNLKQGNLSVS-SAGVVR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
G+HF P QAK V C+ G + DI VD+R SPT+G W ++ + + +Y+ G H
Sbjct: 60 GIHFADVPPGQAKYVTCVRGAVLDIIVDVRVGSPTFGKWEAVRLDDKDRKAVYLSEGLGH 119
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
GF L + V Y ++ Y+ E + V D I I WP+ P +S KD P L Q
Sbjct: 120 GFCALTDDATVTYLCSEGYAPERERTVYPLDPEIGIEWPVDGE--PELSAKDAQGPTLAQ 177
>gi|120401240|ref|YP_951069.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium vanbaalenii
PYR-1]
gi|119954058|gb|ABM11063.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium vanbaalenii
PYR-1]
Length = 184
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 88/173 (50%), Gaps = 9/173 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKL----LKELGLQDVFVQDNHSFSFDCGTIRGLH 57
++ V +L F D RG F++T+ + L L GL FVQD+ S S G IRG+H
Sbjct: 7 DLADVLVLTPTPFRDERGLFTRTFDAALFDAHLGTPGLSARFVQDSQSRSVR-GVIRGMH 65
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
R +AKLVRC G I D+ VDIR S T+G + + N+ +Y+P GF HGF
Sbjct: 66 -GRSGRGEAKLVRCAHGAIHDVLVDIRPGSVTFGRQQAFLLDDNDFRHLYVPPGFLHGFQ 124
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
L +V Y++ + + VA D + I WPL I VS +D+ P
Sbjct: 125 ALTATADVCYRIDRPHDPSENLAVAHDDPDLAIDWPLAGAI---VSAQDRRAP 174
>gi|118616616|ref|YP_904948.1| dTDP-4-dehydrorhamnose 3,5-epimerase, RmlC [Mycobacterium ulcerans
Agy99]
gi|118568726|gb|ABL03477.1| dTDP-4-dehydrorhamnose 3,5-epimerase, RmlC [Mycobacterium ulcerans
Agy99]
Length = 201
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Query: 16 DSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
DSRG F + + S G + Q N S S G +RGLHF P +Q+K V C++G
Sbjct: 21 DSRGMFFEWLTDSGFTAFCGHRFDVRQANCSVS-SAGVLRGLHFAELPPSQSKYVTCVSG 79
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+FD+ VDIR SPT+G W S+ + + IYI G AHGF+ L+ + V+Y + Y+
Sbjct: 80 AVFDVVVDIRLGSPTFGQWDSVLLD-DRHRSIYISEGLAHGFLALQDKSTVMYMCSAEYN 138
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + + D + I WPL+D PS+SE+D L+++
Sbjct: 139 PQREHTICATDPELAIDWPLVDGAPPSLSERDAAAGSLDEV 179
>gi|23016873|ref|ZP_00056625.1| COG1898: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Magnetospirillum magnetotacticum MS-1]
Length = 186
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 83/157 (52%), Gaps = 1/157 (0%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RGW + + ++ GL + Q F+ T++GLH Q P+ +AKL+ I GR
Sbjct: 21 DHRGWLIKPFDARPFAAAGLTAEWRQVIVQFTEHKNTLKGLHHQAEPFLEAKLIAPIEGR 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
F ++VD+R SPT+G W + A+ +Y+ GFAHG +TL + ++ + YS
Sbjct: 81 CFWVSVDLRHESPTFGQWGGAVLDADKRNSLYVSRGFAHGCLTLSDHVNLLICADNDYSP 140
Query: 136 EHDSGVAWQDKSIDITWPLL-DTILPSVSEKDQNLPF 171
+H +AW D + I WPLL DT + +E PF
Sbjct: 141 DHGVSIAWNDPTFAIDWPLLADTEVVMKAEHRDAPPF 177
>gi|288917896|ref|ZP_06412256.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EUN1f]
gi|288350685|gb|EFC84902.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EUN1f]
Length = 207
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 88/168 (52%), Gaps = 4/168 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+ RK D RG F + + + L+ + G + Q N S S GT+RG+H+ + P +QA
Sbjct: 13 LFTPRKHSDPRGTFLEWFRTDALESVAGHRLELAQANASVS-RAGTLRGVHYAQVPPSQA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
K V C++GR+ D VDIR SPT+G ++ + + +YI G H FM L N +
Sbjct: 72 KYVTCVSGRVLDCVVDIRLGSPTFGAHAAVILDDVDRRGLYIAEGLGHAFMALTDNAVIT 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
Y + Y+ + G+ D +D+ WP I P +SEKD P L+Q
Sbjct: 132 YLCSAPYTPAREYGINPLDPDLDLPWP--PDITPLLSEKDVAAPSLSQ 177
>gi|332671010|ref|YP_004454018.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cellulomonas fimi ATCC 484]
gi|332340048|gb|AEE46631.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cellulomonas fimi ATCC 484]
Length = 206
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 6/169 (3%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+ R+F D RG F + ++ E +G Q N S S G +RG+HF P QAK
Sbjct: 14 ITPRQFADDRGVFLEWFAGAAFGEAVGHDLTLAQANCSVSA-AGVLRGIHFADVPPGQAK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
V C G + D+ VDIR SPT+G W S+ + + IY+P G H FM+LE ++ V+Y
Sbjct: 73 YVTCARGAVLDVVVDIRVGSPTFGQWDSVLLDDVDRRAIYVPEGLGHAFMSLEDDSTVLY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFL 172
+ Y+ + GV D + I WP + P +S KD P L
Sbjct: 133 LCSAPYAPGREHGVHPLDADLAIAWPTQGRDGRPLTPLLSPKDAEAPSL 181
>gi|255018157|ref|ZP_05290283.1| hypothetical protein LmonF_11371 [Listeria monocytogenes FSL
F2-515]
Length = 101
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 60/88 (68%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+++K + F D RG+F ++Y+ K E G+ F+QDNHS S + G +RG+H+Q P AQ
Sbjct: 11 VKLVKPKVFGDHRGFFMESYNEKAFHEAGIDMKFIQDNHSLSVEAGVLRGMHYQTNPKAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCW 93
KL+R G I+D+ VD+R+ SPTYG W
Sbjct: 71 TKLIRVATGAIYDVVVDMRKGSPTYGEW 98
>gi|91778373|ref|YP_553581.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia xenovorans
LB400]
gi|91691033|gb|ABE34231.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia xenovorans
LB400]
Length = 182
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 94/167 (56%), Gaps = 9/167 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ-- 59
I V++++ R D+ G ++ + +E + FVQ+ H+ + + GLH+Q
Sbjct: 10 IRDVKLIEPRIVSDTHGVSFDSFDQEDFEEHVARGYRFVQERHAV-YPYNVLCGLHYQIQ 68
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
RP Q KLVR + G + ++AVD+RR SPT+G ++S +SA N Q+++P GFAHGF+ L
Sbjct: 69 RP---QGKLVRVVNGEVVNVAVDLRRWSPTFGRYISTRLSAANCRQLWVPPGFAHGFLVL 125
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
EV+ K T+ EH+ + W D I I W L P +SE+D
Sbjct: 126 SDVAEVLCKTTERGLAEHERTLQWDDPDIAIEWDL--NTAPIISERD 170
>gi|298346186|ref|YP_003718873.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus curtisii ATCC
43063]
gi|298236247|gb|ADI67379.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus curtisii ATCC
43063]
Length = 205
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 87/172 (50%), Gaps = 12/172 (6%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+ ++F D RG F + Y E+ G VQ N S S G +RG+HF P +QAK
Sbjct: 14 ITPKQFPDERGAFMEMYKMGEFAEVVGHPLNLVQANCSIS-KAGVVRGIHFAEVPPSQAK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
V C G + D AVDIR SPT+G W S+ + + IY+ G H F+ LE N+ V+Y
Sbjct: 73 YVMCPRGAVLDFAVDIRVGSPTFGQWDSVLLEGEHRRAIYLSEGLGHCFVALEDNSTVVY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWP-------LLDTILPSVSEKDQNLPFL 172
++ Y+ + GV+ D + + WP L+ IL SEKD P L
Sbjct: 133 LCSEGYNPGREHGVSPVDPEVALKWPDHDLAGRPLEVIL---SEKDTAAPSL 181
>gi|253572888|ref|ZP_04850286.1| LOW QUALITY PROTEIN: dTDP-4-dehydrorhamnose 3,5-epimerase
[Bacteroides sp. 1_1_6]
gi|251837520|gb|EES65613.1| LOW QUALITY PROTEIN: dTDP-4-dehydrorhamnose 3,5-epimerase
[Bacteroides sp. 1_1_6]
Length = 125
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 72/122 (59%), Gaps = 7/122 (5%)
Query: 54 RGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFA 113
RG F+ +AQ+KLVR I G + D+AVDIR+ SPT+G +VS+E++ N Q +IP GFA
Sbjct: 3 RGYFFE--SFAQSKLVRVIKGAVLDVAVDIRKGSPTFGQYVSVELTGENHRQFFIPRGFA 60
Query: 114 HGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPF 171
HGF L YK +FYS + + +AW D ++I W P +L SEKD P
Sbjct: 61 HGFSVLSEGMIFQYKCDNFYSPQSEGAIAWNDPDLNIDWRIPAEKVVL---SEKDGKHPR 117
Query: 172 LN 173
L
Sbjct: 118 LK 119
>gi|237748304|ref|ZP_04578784.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oxalobacter formigenes
OXCC13]
gi|229379666|gb|EEO29757.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oxalobacter formigenes
OXCC13]
Length = 182
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 2/164 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+I+ F DS G+ + ++ + + V D + GLH+Q PP
Sbjct: 8 IREVKIVNPDVFHDSNGFLIEDFNLETFGKALDHAVEFVDERLIHSGRHELMGLHYQLPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLV G+ F +AVD+R++SP +G W+ +S N ++ ++P GF HGF+TL
Sbjct: 68 HAQEKLVHVTNGQTFQVAVDLRKSSPDFGKWIGTVVSDENRIRFWVPEGFGHGFVTLSDF 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
++ VT + E + + W D +++I W + I P VS KD
Sbjct: 128 ADIAIGVTKAFDKESERCIRWDDPALEIDWHGI--IAPRVSLKD 169
>gi|209521671|ref|ZP_03270362.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. H160]
gi|209497888|gb|EDZ98052.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. H160]
Length = 183
Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 93/168 (55%), Gaps = 8/168 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQ--RPP 62
V++++ F D G+ +++S+ + Q FVQD H + +RGLH+Q RP
Sbjct: 13 VKLIEPEVFVDEFGFCFESFSADEFSDDVAQGFNFVQDRHLRAVH-RVLRGLHYQVQRP- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q +L+R + G +FD+AVD+R NSP +G W +S N Q+++P GFAHGF+ L
Sbjct: 71 --QGRLLRVVRGEVFDVAVDVRLNSPNFGKWSGEYLSDANQRQVWVPPGFAHGFVVLSDV 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNL 169
E ++K T+++ E + + W D I I WP+ + IL S + L
Sbjct: 129 AECVWKTTEYWFPELERCLLWSDPDIGIEWPIDFEPILGSKDAAGRRL 176
>gi|256397295|ref|YP_003118859.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Catenulispora acidiphila DSM
44928]
gi|256363521|gb|ACU77018.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Catenulispora acidiphila DSM
44928]
Length = 200
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 87/180 (48%), Gaps = 10/180 (5%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIR 54
M+I P+ I + R D RG F++ Y LL E +G Q N S S G +R
Sbjct: 1 MDIAPLSIDGAWEITPRLHGDPRGLFTEWYRFDLLAEAVGHPLDLRQGNLSVSA-AGVVR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
G+HF P QAK V C G + D+ DIR SPT+G W + + + +YI G H
Sbjct: 60 GIHFADVPPGQAKYVTCTRGAVLDVIADIRVGSPTFGQWQGVRLDEDTRKAVYIAEGLGH 119
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
GF L + + Y + Y+ H+ GV D + I WP +P +SE+D+ P L +
Sbjct: 120 GFCALTDDATLTYLCSATYNPGHEHGVYPLDAELGIDWP---AEVPHLSERDEKSPSLAE 176
>gi|282861853|ref|ZP_06270917.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp. ACTE]
gi|282563669|gb|EFB69207.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp. ACTE]
Length = 199
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 4/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I + + + F DSRG F + + + E G + Q N S S GT+RG+HF
Sbjct: 4 LSIPGALVHEPKIFPDSRGSFHEWFQASAFAEATGHRLSLEQANCSVSSR-GTLRGIHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V+C+ G + D+ VDIR SPTY W ++ + +Y+ G H FM L
Sbjct: 63 DVPPSQAKYVKCVRGAVLDVIVDIRVGSPTYRQWEAVRLDDVEHRSVYLSEGLGHAFMAL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ V+Y ++ YS + G+ D ++ I WP + P +S+KD P L + +
Sbjct: 123 TDDATVVYLCSEGYSPGREHGINPLDPALGIEWPA--DVPPLLSDKDAAAPTLAEAE 177
>gi|118469656|ref|YP_890202.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium smegmatis str.
MC2 155]
gi|118170943|gb|ABK71839.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium smegmatis str.
MC2 155]
Length = 184
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 86/162 (53%), Gaps = 6/162 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKL----LKELGLQDVFVQDNHSFSFDCGTIRGLH 57
++ V +L F D RG F++T+ + + L G+ FVQD+ S S G +RG+H
Sbjct: 7 DLADVLVLVPEPFRDERGLFTRTFDAHIFDDHLGRPGVSASFVQDSQSRS-SQGVVRGMH 65
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
R +AKLVRC G + D+ VDIR +SPT+G + + + +Y+P GF HGF
Sbjct: 66 -GRSERGEAKLVRCAHGAVHDVLVDIRPDSPTFGRQQAFLLDDKDFRHLYVPPGFLHGFQ 124
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL 159
L +V Y++ + D VA+ D + I WPL T++
Sbjct: 125 ALTAIADVCYRIDRPHDPSEDLAVAYNDPDLGIDWPLPVTMV 166
>gi|315657310|ref|ZP_07910192.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315491782|gb|EFU81391.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 205
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 88/174 (50%), Gaps = 12/174 (6%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+ ++F D RG F + Y E+ G VQ N S S G +RG+HF P +QAK
Sbjct: 14 ITPKQFPDERGAFMEMYKMGEFAEVVGHPLNLVQANCSIS-KAGVVRGIHFAEVPPSQAK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
V C G + D AVDIR SPT+G W S+ + + IY+ G H F+ LE ++ V+Y
Sbjct: 73 YVMCPRGAVLDFAVDIRVGSPTFGQWDSVLLEGEHRRAIYLSEGLGHCFVALEDDSTVVY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWP-------LLDTILPSVSEKDQNLPFLNQ 174
++ Y+ + GV+ D + + WP L+ IL SEKD P L +
Sbjct: 133 LCSEGYNPGREHGVSPVDPEVALKWPDHDLAGRPLEVIL---SEKDTAAPSLTE 183
>gi|300728519|ref|ZP_07061878.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella bryantii B14]
gi|299774237|gb|EFI70870.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella bryantii B14]
Length = 122
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
+VRC+ G + D+AVDIR+ SPTYG V++E++ +N Q ++P GFAHGF L Y
Sbjct: 1 MVRCVKGAVLDVAVDIRKGSPTYGQHVAVELTEDNHRQFFVPRGFAHGFAVLSETAVFQY 60
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
K +FY E D G++ D S+ I W +D +SEKD L DSPF+
Sbjct: 61 KCDNFYHPEADGGISIVDDSLGIDWK-IDAEKALLSEKDTKHVLLEDFDSPFD 112
>gi|319778859|ref|YP_004129772.1| dTDP-glucose 4,6-dehydratase [Taylorella equigenitalis MCE9]
gi|317108883|gb|ADU91629.1| dTDP-glucose 4,6-dehydratase [Taylorella equigenitalis MCE9]
Length = 499
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 87/147 (59%), Gaps = 6/147 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
+L K+ D+RG S L + G FVQ+N + S GT+RGLHFQR Q
Sbjct: 331 AHLLHFPKYTDTRGSVSPRELHALHNQTGTN--FVQENFTKSV-LGTLRGLHFQRE-RPQ 386
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKL++ + G+I D+ VD+R +S +G W S ++ G +++P G+AHG++TL ++ V
Sbjct: 387 AKLIQVLEGKILDVVVDLRPHSDEFGTWKSFKL--KQGDSLFVPAGYAHGYLTLSESSYV 444
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITW 152
+YK++DFY + + + D+ ++I W
Sbjct: 445 LYKLSDFYDPKDQYSIRYDDQYLNIDW 471
>gi|296159913|ref|ZP_06842734.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. Ch1-1]
gi|295889896|gb|EFG69693.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. Ch1-1]
Length = 198
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 93/167 (55%), Gaps = 9/167 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ-- 59
I V++++ R D+ G ++ + +E + FVQ+ H+ + + GLH+Q
Sbjct: 10 IRDVKLIEPRIVSDTHGVSFDSFDQEDFEEHVARGYRFVQERHAV-YPHNVLCGLHYQIQ 68
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
RP Q KLVR + G + ++AVD+RR SPT+G ++S +SA N Q+++P GFAHGF+ L
Sbjct: 69 RP---QGKLVRVVNGEVANVAVDLRRWSPTFGRYISTRLSAANCRQLWVPPGFAHGFLVL 125
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
EV+ K T+ EH+ + W D I I W L P SE+D
Sbjct: 126 SDVAEVLCKTTERGLTEHERTLQWDDPDIAIEWDL--NTAPITSERD 170
>gi|319440778|ref|ZP_07989934.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium variabile DSM
44702]
Length = 228
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 96/172 (55%), Gaps = 8/172 (4%)
Query: 12 RKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
R F D RG F + + + + E LG Q N S S + G +RG+H+ P QAK V
Sbjct: 27 RIFPDDRGTFLEWFRADAVAEKLGYPLDLPQANLSTSVE-GVVRGIHYADVPPGQAKYVT 85
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN--TEVIYK 128
C+AGRI D+ VD+RR S T+G + +E+SA N +Y+P G HGF+ E + V Y
Sbjct: 86 CVAGRILDVIVDLRRGSTTFGRHIVVELSAENRRGLYLPVGMGHGFVVPEGSGPATVCYL 145
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWP---LLDTILPSVSEKDQNLPFLNQIDS 177
V++ Y+ + + GV D + I W L D+ L +S+KD++ P ++++
Sbjct: 146 VSESYNPDAEHGVNPLDPKLGIDWSVAGLADSDL-VLSDKDRDAPGYREVEA 196
>gi|300789778|ref|YP_003770069.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Amycolatopsis mediterranei
U32]
gi|299799292|gb|ADJ49667.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Amycolatopsis mediterranei
U32]
Length = 201
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 4/164 (2%)
Query: 12 RKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
R F D RG F + + ++ +G Q NHS S GTIRG+HF P QAK V
Sbjct: 17 RAFPDDRGLFVAPFQEDVFRDAVGHSLRLGQANHSVSRR-GTIRGIHFADTPPGQAKYVY 75
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
C G + D+ VDIR SPT+G W ++ + + +Y+ G HGF+ LE +T + Y +
Sbjct: 76 CPRGSLLDVVVDIRVGSPTFGRWDAVVLDSREFRAMYLAEGLGHGFVALEDDTVMTYICS 135
Query: 131 DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ Y+ + G+ D +D+ WP I +S+KD+ P L +
Sbjct: 136 EPYNPAGEHGITPLDPVLDLPWPA--DIAQVLSDKDRIAPTLAE 177
>gi|227875184|ref|ZP_03993326.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus mulieris ATCC
35243]
gi|227844089|gb|EEJ54256.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus mulieris ATCC
35243]
Length = 204
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 6/171 (3%)
Query: 9 LKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+ ++F D RG F + Y + K +G VQ N S S G +RG+HF P +QAK
Sbjct: 14 ITPKQFPDERGAFMEMYKLGEFAKVVGHPLSLVQANCSIS-KAGVVRGIHFAEVPPSQAK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
V C G + D AVDIR SPT+G W S+ + + IY+ G H F+ LE ++ V+Y
Sbjct: 73 YVMCPRGAVLDFAVDIRVGSPTFGAWDSVLLEGEHRRAIYLSEGLGHCFVALEDDSTVVY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQ 174
++ Y+ + GV+ D + + +P D + +SEKD P L +
Sbjct: 133 LCSEGYNPGREHGVSPVDPEVGLVFPDKDLAGRPLKVLLSEKDTAAPSLAE 183
>gi|304390054|ref|ZP_07372008.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304326536|gb|EFL93780.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 205
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 87/172 (50%), Gaps = 12/172 (6%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+ ++F D RG F + Y E+ G VQ N S S G +RG+HF P +QAK
Sbjct: 14 ITPKQFPDERGAFMEMYKMGEFAEVVGHPLNLVQANCSIS-KAGVVRGIHFAEVPPSQAK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
V C G + D AVDIR SPT+G W S+ + + IY+ G H F+ LE ++ V+Y
Sbjct: 73 YVMCPRGAVLDFAVDIRVGSPTFGQWDSVLLEGEHRRAIYLSEGLGHCFVALEDDSTVVY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWP-------LLDTILPSVSEKDQNLPFL 172
++ Y+ + GV+ D + + WP L+ IL SEKD P L
Sbjct: 133 LCSEGYNPGREHGVSPVDPEVALKWPDHDLAGRPLEVIL---SEKDTAAPSL 181
>gi|229578405|ref|YP_002836803.1| dTDP-4-dehydrorhamnose 35-epimerase related [Sulfolobus islandicus
Y.G.57.14]
gi|228009119|gb|ACP44881.1| dTDP-4-dehydrorhamnose 35-epimerase related [Sulfolobus islandicus
Y.G.57.14]
Length = 120
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 78/124 (62%), Gaps = 7/124 (5%)
Query: 53 IRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGF 112
+RGLH+Q PP Q K+V I GRI D+AVDIR++S ++G +V E+S NN ++IP GF
Sbjct: 1 MRGLHYQLPPKEQGKIVTVIKGRILDVAVDIRKSSESFGKYVYAELSENNHYMLWIPPGF 60
Query: 113 AHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
AHGF LE +T V + + YS ++ + + SI I WP+ + + VSEKD P L
Sbjct: 61 AHGFQALEESTIVYFITYNEYSPLNERCINY---SI-INWPIKNIV---VSEKDAKCPPL 113
Query: 173 NQID 176
N+ +
Sbjct: 114 NKAE 117
>gi|307700769|ref|ZP_07637794.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus mulieris
FB024-16]
gi|307613764|gb|EFN93008.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus mulieris
FB024-16]
Length = 204
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 6/171 (3%)
Query: 9 LKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+ ++F D RG F + Y + K +G VQ N S S G +RG+HF P +QAK
Sbjct: 14 ITPKQFPDERGAFMEMYKLGEFAKVVGHPLSLVQANCSIS-KAGVVRGIHFAEVPPSQAK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
V C G + D AVDIR SPT+G W S+ + + IY+ G H F+ LE ++ V+Y
Sbjct: 73 YVMCPRGAVLDFAVDIRVGSPTFGAWDSVLLEGEHRRAIYLSEGLGHCFVALEDDSTVVY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQ 174
++ Y+ + GV+ D + + +P D + +SEKD P L +
Sbjct: 133 LCSEGYNPGREHGVSPVDPEVGLVFPDKDLQGRPLQVLLSEKDTAAPSLAE 183
>gi|269978074|ref|ZP_06185024.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus mulieris 28-1]
gi|269933583|gb|EEZ90167.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus mulieris 28-1]
Length = 204
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 6/171 (3%)
Query: 9 LKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+ ++F D RG F + Y + K +G VQ N S S G +RG+HF P +QAK
Sbjct: 14 ITPKQFPDERGAFMEMYKLGEFAKVVGHPLSLVQANCSIS-KAGVVRGIHFAEVPPSQAK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
V C G + D AVDIR SPT+G W S+ + + IY+ G H F+ LE ++ V+Y
Sbjct: 73 YVMCPRGAVLDFAVDIRVGSPTFGAWDSVLLEGEHRRAIYLSEGLGHCFVALEDDSTVVY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQ 174
++ Y+ + GV+ D + + +P D + +SEKD P L +
Sbjct: 133 LCSEGYNPGREHGVSPVDPEVGLVFPDKDLQGRPLKVLLSEKDTAAPSLAE 183
>gi|284988977|ref|YP_003407531.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geodermatophilus obscurus DSM
43160]
gi|284062222|gb|ADB73160.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geodermatophilus obscurus DSM
43160]
Length = 187
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
L + ED RGWF +T + G+ F+QD+ S S G +RG+H R +AK
Sbjct: 15 LPETRHEDERGWFVRTLDVAVADRAGVDARAFLQDSQSRSRQ-GVLRGMH-GRAGAGEAK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVRC G + D+ VD R +SPT+G + + G +Y+P GF HGF L +V Y
Sbjct: 73 LVRCARGAVLDVLVDTRPSSPTFGRSATFRLDDETGRHLYVPPGFLHGFQVLTPEADVCY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPL 154
++ + D V + D + + WPL
Sbjct: 133 RIDREHDPSEDLAVRYDDPDLALPWPL 159
>gi|306818444|ref|ZP_07452167.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus mulieris ATCC
35239]
gi|304648617|gb|EFM45919.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus mulieris ATCC
35239]
Length = 204
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 6/171 (3%)
Query: 9 LKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+ ++F D RG F + Y + K +G VQ N S S G +RG+HF P +QAK
Sbjct: 14 ITPKQFPDERGAFMEMYKLGEFAKVVGHPLSLVQANCSIS-KAGVVRGIHFAEVPPSQAK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
V C G + D AVDIR SPT+G W S+ + + IY+ G H F+ LE ++ V+Y
Sbjct: 73 YVMCPRGAVLDFAVDIRVGSPTFGVWDSVLLEGEHRRAIYLSEGLGHCFVALEDDSTVVY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQ 174
++ Y+ + GV+ D + + +P D + +SEKD P L +
Sbjct: 133 LCSEGYNPGREHGVSPVDPEVGLVFPDKDLQGRPLQVLLSEKDTAAPSLAE 183
>gi|289642891|ref|ZP_06475026.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia symbiont of Datisca
glomerata]
gi|289507274|gb|EFD28238.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia symbiont of Datisca
glomerata]
Length = 216
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 4/178 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + R+ D RG F + + S+ + E +G Q NHS S GT+RG+H+
Sbjct: 17 LEIAGAWVFTPRQHTDDRGTFLEWFRSETVVEAVGHPLHLAQANHSVSRR-GTLRGIHYA 75
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V C+ GR+ D VDIR SPTYG ++ + + +Y+ G H FM L
Sbjct: 76 AVPPSQAKYVTCVHGRVLDCVVDIRLGSPTYGTHQAVLLDDVDRKGLYLAEGLGHSFMAL 135
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
N + Y + YS + G+ D + + WP + P +SEKD P L + ++
Sbjct: 136 TDNAAISYICSTPYSPAREYGIDPLDPDLTLPWP--RDVAPLLSEKDARAPSLKEAEA 191
>gi|237746138|ref|ZP_04576618.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oxalobacter formigenes
HOxBLS]
gi|229377489|gb|EEO27580.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oxalobacter formigenes
HOxBLS]
Length = 182
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 92/175 (52%), Gaps = 4/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I VRI+ F + G+F +T+ K LG F ++ + + I GL +Q P
Sbjct: 8 IPDVRIVVPAVFRNGEGFFPETFDLDAFRKALGKPVGFAEEIQTHTGRHELI-GLRYQMP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P QA+LV + G++F +AVD+R++SPT+ WV +S NG + +IP GFA G +TL
Sbjct: 67 PCVQARLVHVVNGQVFHVAVDLRKSSPTFSRWVGTVLSDENGYRFWIPEGFASGLVTLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+++ + T Y + + W D ++ I W + I P VSE D L++ D
Sbjct: 127 FADIVAQTTRPYCKASERCIRWDDPAVAIDWHGI--IAPRVSECDLKGRLLDEAD 179
>gi|239983229|ref|ZP_04705753.1| dTDP-4-keto-6-deoxyhexose 3,5-epimerase [Streptomyces albus J1074]
gi|291455061|ref|ZP_06594451.1| dTDP-4-keto-6-deoxyhexose 3,5-epimerase [Streptomyces albus J1074]
gi|291358010|gb|EFE84912.1| dTDP-4-keto-6-deoxyhexose 3,5-epimerase [Streptomyces albus J1074]
Length = 220
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 89/183 (48%), Gaps = 12/183 (6%)
Query: 1 MNINPVRILKT--------RKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCG 51
+N VR L+ + F D RG F +Y + E G Q +HS S G
Sbjct: 21 VNAGAVRTLRVSGAFVFTPQVFHDDRGMFVDSYQLPVFAETAGRPFPLFQASHSRSRR-G 79
Query: 52 TIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTG 111
+RG+HF P AK V C AGR D+ VD+R SPT+G W S+ + A Y+P G
Sbjct: 80 VVRGVHFTSAPPGMAKYVHCAAGRALDLVVDLRVGSPTFGRWDSVVLDAARPRSTYLPVG 139
Query: 112 FAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPF 171
H F+ LE +T + Y ++ Y + V+ D ++D+ +PL P +S +D+ P
Sbjct: 140 VGHAFVALEDDTMMTYLMSGGYVPRDEHAVSPLDPALDLPFPLDGD--PVLSARDRQAPT 197
Query: 172 LNQ 174
L +
Sbjct: 198 LAE 200
>gi|271962204|ref|YP_003336400.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptosporangium roseum DSM
43021]
gi|270505379|gb|ACZ83657.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptosporangium roseum DSM
43021]
Length = 216
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 4/164 (2%)
Query: 12 RKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
R D RG F ++Y + L+E +G + Q N S S G +RG+HF P QAK V
Sbjct: 15 RIHADPRGSFLESYRAADLEESVGHRLDLAQVNCSVSRR-GVLRGIHFADVPPGQAKYVT 73
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
C++G + D+ VDIR SPT+G W ++ + + +Y+ G HGF+TL V+Y +
Sbjct: 74 CVSGAVLDVVVDIRVGSPTFGRWETVLLDDESRRGLYVAEGLGHGFLTLSEQATVVYLCS 133
Query: 131 DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
++ + G+ D ++ I WP + P +S+KD P L +
Sbjct: 134 RPFTPGREHGIHPLDPALGIDWPA--GVEPLLSDKDAAAPTLKE 175
>gi|257057034|ref|YP_003134866.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Saccharomonospora viridis DSM
43017]
gi|256586906|gb|ACU98039.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Saccharomonospora viridis DSM
43017]
Length = 202
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 14 FEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
F D RG F Y E +G + Q N+S S GTIRG+HF+ P QAK V C
Sbjct: 19 FPDRRGLFVAPYQEPAFVEAVGHRLTVAQTNNSVSRR-GTIRGVHFRDTPPGQAKYVYCA 77
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
G + D+ VD+R SPT+G W + + + +Y+ G H FM LE T + Y +
Sbjct: 78 HGALLDVVVDLRVGSPTFGQWDVVRLDSTAMRCVYLAEGLGHAFMALEDGTVMTYLCSTG 137
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
Y + G+ D +++ WP + P +S+KD P L Q
Sbjct: 138 YEPSAEHGITPLDPELNLPWP--SDVEPVLSDKDAAAPTLAQ 177
>gi|7800660|gb|AAF70101.1|AF257324_2 AknL [Streptomyces galilaeus]
Length = 201
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 5/166 (3%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
FED RG F+ + +F Q NHS S GT+RG+H+ P AK V C
Sbjct: 19 FEDDRGLFTSPFQEPAFVAALGHPLFPVAQSNHSRS-RRGTVRGIHYTVTPPGVAKYVYC 77
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
GR DI VDIR SPTYG W S + +Y P G H F+ LE +T + Y ++
Sbjct: 78 ARGRAIDIVVDIRVGSPTYGRWDSSVLDPEGFRAMYFPVGVGHAFVALEDDTVMSYMLSG 137
Query: 132 FYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
Y +H+ ++ D ++ + P+ + P +S +D P L Q+ +
Sbjct: 138 SYEAQHEMSLSPLDPALGL--PIPQDVAPLLSARDTAAPLLEQVRA 181
>gi|257880163|ref|ZP_05659816.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
1,230,933]
gi|257814391|gb|EEV43149.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
1,230,933]
Length = 118
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 70/116 (60%), Gaps = 3/116 (2%)
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
++R + G + D+ VDIR+ SPTYG W +S +N Q+ +P G+AHGF+TL N +Y
Sbjct: 1 MIRVVTGAVLDVVVDIRKGSPTYGQWDGFILSEHNHRQLLVPKGYAHGFVTLTPNVNFLY 60
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS--PFEY 181
K ++Y+ E D G+A+ D + I WP +D +SEKD P L + ++ PF Y
Sbjct: 61 KCDNYYNAEADGGIAFDDPDLAIDWP-IDPSRAIMSEKDHRHPTLKEFEAENPFVY 115
>gi|25026899|ref|NP_736953.1| putative dTDP-4-keto-6-deoxyglucose-3, 5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
efficiens YS-314]
gi|259506038|ref|ZP_05748940.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Corynebacterium efficiens YS-314]
gi|23492179|dbj|BAC17153.1| putative dTDP-4-keto-6-deoxyglucose-3,5- epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
efficiens YS-314]
gi|259166374|gb|EEW50928.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Corynebacterium efficiens YS-314]
Length = 459
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 87/159 (54%), Gaps = 11/159 (6%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + + +GL D VQ+N SF+ GT RGLH + P+ K V G
Sbjct: 28 DNRGWFKENWQRQKMLAVGLPDFGPVQNNMSFNATAGTTRGLHAE--PWD--KFVSVGTG 83
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
R+F D+R S TYG V+ EI+ + G +Y+P G A+GF LE T Y V D +S
Sbjct: 84 RVFGAWCDLREGSATYGAVVTQEITPDIG--VYVPRGVANGFQALEDETLYTYLVNDHWS 141
Query: 135 VEHD-SGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ S V D ++ I WPL L +SEKD+N P L
Sbjct: 142 PDAQYSNVNLADPALGIEWPL---PLTEMSEKDKNHPML 177
>gi|330991366|ref|ZP_08315317.1| dTDP-4-dehydrorhamnose 3-5-epimerase [Gluconacetobacter sp. SXCC-1]
gi|329761385|gb|EGG77878.1| dTDP-4-dehydrorhamnose 3-5-epimerase [Gluconacetobacter sp. SXCC-1]
Length = 204
Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 82/145 (56%), Gaps = 2/145 (1%)
Query: 33 LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGC 92
+ + + F++ + + +D +RGL+ Q PP+AQ +L++C G ++ + VD+R S ++G
Sbjct: 56 IAMTEYFMRSSRTERYDRHVVRGLYCQVPPHAQGRLLQCGRGAVWMVGVDVRTGSRSFGQ 115
Query: 93 WVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITW 152
W + +SA N Q++IP GF HG L+ NTEV + T + + W D+++ I W
Sbjct: 116 WAGVTLSAENARQLWIPPGFLHGLCCLDGNTEVTCRQTRPDARASTRTIRWNDETLGIEW 175
Query: 153 PLLDTILPSVSEKDQNLP-FLNQID 176
P+ D +S D + P F N ID
Sbjct: 176 PVRDQQA-VLSPADGHAPSFSNVID 199
>gi|260437449|ref|ZP_05791265.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Butyrivibrio
crossotus DSM 2876]
gi|292810081|gb|EFF69286.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Butyrivibrio
crossotus DSM 2876]
Length = 191
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 91/172 (52%), Gaps = 13/172 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ--RPPYAQAKLVRCIA 73
D RG + Y+ + G++ + ++ + G IR LHFQ +P QAKL+RCI+
Sbjct: 25 DERGGLLKDYNVDIFNSNGIKHNLKETFYTITRK-GVIRALHFQLIKP---QAKLIRCIS 80
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G ++ + D+R+ SPTY W+ ++ +N +Y+P F G+ +E + V YK + +
Sbjct: 81 GHVYAVICDLRKESPTYKKWLPFHLTGDNMTMLYVPGEFGLGYFVIE-DAVVSYKCDEVF 139
Query: 134 SVEHDSGVAWQDKSIDITWP--LLDTILPS----VSEKDQNLPFLNQIDSPF 179
E DSG+ W DK + I WP L++ + +S+KD NL + D +
Sbjct: 140 YGEGDSGIMWNDKDLAIEWPIELIEGVTSEDDLIISDKDSNLMSFKEYDERY 191
>gi|296130190|ref|YP_003637440.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cellulomonas flavigena DSM
20109]
gi|296022005|gb|ADG75241.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cellulomonas flavigena DSM
20109]
Length = 210
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKL 68
+ ++ D RG F + + E +Q + G +RG+HF P QAK
Sbjct: 14 ITPKQHGDPRGVFLEYFKGGPFAEATGHAFDLQQANCSVSAAGVLRGIHFADVPPGQAKY 73
Query: 69 VRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128
V C G + D+ VDIR SPT+G W ++ + + IY+ G H FM+LE ++ V+Y
Sbjct: 74 VTCAKGAVLDVVVDIRVGSPTFGRWDTVLLDDTDRRAIYLGEGLGHAFMSLEDDSTVLYL 133
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPFLNQ 174
+ Y+ + G+ D I ITWP + P +SEKD P L +
Sbjct: 134 CSTGYAPGREHGIHPLDPEIGITWPTTARDGSPLTPQLSEKDTAAPTLAE 183
>gi|269957344|ref|YP_003327133.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylanimonas cellulosilytica
DSM 15894]
gi|269306025|gb|ACZ31575.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylanimonas cellulosilytica
DSM 15894]
Length = 205
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 89/184 (48%), Gaps = 11/184 (5%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIR 54
M+I ++I L R+F D RG F + + E +G Q N S S G +R
Sbjct: 1 MDIRALKIEGAWELTPRQFGDDRGVFLEWFKGDAFAEAVGHGIDLRQANLSVSA-AGVLR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
G+HF P +QAK V C+ G + D+ VDIR SPTYG W S+ + + IY+ G H
Sbjct: 60 GVHFADVPPSQAKYVTCVKGAVLDVVVDIRVGSPTYGQWDSVLLDDVDRRAIYLSEGLGH 119
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLP 170
F +LE + V Y + Y+ + G+ D I I WP + P +S+KD P
Sbjct: 120 AFCSLEDGSTVTYLCSAPYAPGREHGIHPLDPEIGIVWPTTGRDGSPLAPLLSDKDAAAP 179
Query: 171 FLNQ 174
L +
Sbjct: 180 TLAE 183
>gi|260836799|ref|XP_002613393.1| hypothetical protein BRAFLDRAFT_68401 [Branchiostoma floridae]
gi|229298778|gb|EEN69402.1| hypothetical protein BRAFLDRAFT_68401 [Branchiostoma floridae]
Length = 493
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 86/167 (51%), Gaps = 6/167 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+L+ + D RG + Y+ G+ + Q S S+ +RGLH K
Sbjct: 16 LLEFARHSDRRGHLEELYNETRYPS-GVTQHWAQVTCSTSYR-NVLRGLHCS----TYGK 69
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV C+AGRI+D+ VD+R+ SPTY W + +S NN Q+YIP HGF TL V+Y
Sbjct: 70 LVTCVAGRIYDVVVDLRKTSPTYLRWSAAILSDNNRRQMYIPPNCGHGFYTLGDRNTVVY 129
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
Y + + W D +++ WPL + P +S+KD++ P L++
Sbjct: 130 CQGGVYQPATERDLLWFDPFVNVYWPLETSQPPVLSDKDRSAPCLDE 176
>gi|226365215|ref|YP_002782998.1| dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase [Rhodococcus opacus
B4]
gi|226243705|dbj|BAH54053.1| putative dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase [Rhodococcus
opacus B4]
Length = 189
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 84/163 (51%), Gaps = 13/163 (7%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV----------FVQDNHSFSFDCG 51
++ V + F D RG F++T+ +++ + FVQD+ S S G
Sbjct: 8 ELDDVLLFTPEPFRDGRGLFTRTFDAQIFDDAVASRASTGRVVRAADFVQDSQSRSVR-G 66
Query: 52 TIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTG 111
IRG+H R +AKLVRC G I+D+ VD+RR SPT+G + + +++P G
Sbjct: 67 VIRGMHC-RSGDGEAKLVRCARGAIYDVLVDVRRTSPTFGRKQAFRLDDETFSHLFVPAG 125
Query: 112 FAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
F HGF L + +V Y++ + D VA+ D+S+ I WPL
Sbjct: 126 FLHGFQAL-TDCDVCYRIDRGHDPTEDLAVAYDDRSLGIEWPL 167
>gi|325675109|ref|ZP_08154795.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus equi ATCC 33707]
gi|325554070|gb|EGD23746.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus equi ATCC 33707]
Length = 201
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 93/175 (53%), Gaps = 14/175 (8%)
Query: 9 LKTRKFEDSRG----WFSQ-TYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPY 63
+ R+F D RG WF +S+ + + L L Q N S S G +RG+HF P
Sbjct: 17 ITPRQFGDHRGVFLEWFKDPGFSANVGRTLDL----AQANCSVSA-AGVLRGIHFADVPP 71
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
QAK V C+ G I D+ VD+R SPT+G W S+ + + ++I G HGF++LE ++
Sbjct: 72 GQAKYVTCVRGAILDVVVDLRVGSPTFGQWDSVLLDDVDRRAVFISEGLGHGFLSLEDDS 131
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPFLNQ 174
VIY + Y+ + + V+ D I I WP++ ++ ++S+KD P L Q
Sbjct: 132 TVIYLCSTGYAPDREHEVSPLDPGIGIDWPVVGRDGSSLQWTLSDKDLAAPTLQQ 186
>gi|312137739|ref|YP_004005075.1| dtdp-4-dehydrorhamnose 3,5-epimerase rmlc [Rhodococcus equi 103S]
gi|311887078|emb|CBH46387.1| dTDP-4-dehydrorhamnose 3,5-epimerase RmlC [Rhodococcus equi 103S]
Length = 198
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 93/175 (53%), Gaps = 14/175 (8%)
Query: 9 LKTRKFEDSRG----WFSQ-TYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPY 63
+ R+F D RG WF +S+ + + L L Q N S S G +RG+HF P
Sbjct: 14 ITPRQFGDHRGVFLEWFKDPGFSANVGRTLDL----AQANCSVSA-AGVLRGIHFADVPP 68
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
QAK V C+ G I D+ VD+R SPT+G W S+ + + ++I G HGF++LE ++
Sbjct: 69 GQAKYVTCVRGAILDVVVDLRVGSPTFGQWDSVLLDDVDRRAVFISEGLGHGFLSLEDDS 128
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPFLNQ 174
VIY + Y+ + + V+ D I I WP++ ++ ++S+KD P L Q
Sbjct: 129 TVIYLCSTGYAPDREHEVSPLDPGIGIDWPVVGRDGSSLQWTLSDKDLAAPTLQQ 183
>gi|29827490|ref|NP_822124.1| dTDP-4-keto-6-deoxyhexose 3,5-epimerase [Streptomyces avermitilis
MA-4680]
gi|5921160|dbj|BAA84596.1| dTDP-4-keto-6-deoxyhexose 3,5-epimerase [Streptomyces avermitilis]
gi|29604590|dbj|BAC68659.1| dTDP-4-keto-6-deoxyhexose 3,5-epimerase [Streptomyces avermitilis
MA-4680]
Length = 225
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 84/164 (51%), Gaps = 6/164 (3%)
Query: 14 FEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
F D RG F Y +L E +G + Q S S G +RG+HF P QAK V C
Sbjct: 45 FPDERGLFVTPYQEPVLSEAVGHRFPTAQTCQSVSRR-GVVRGVHFTATPPGQAKYVHCA 103
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
GR D VD+R SPT+G W S+ + +Y+P G H F+ LE +T ++Y ++
Sbjct: 104 RGRALDFVVDLRTGSPTFGQWDSVLLDQERFRSVYLPIGVGHAFVALEDDTAMVYLMSSG 163
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTI--LPSVSEKDQNLPFLNQ 174
Y +++ ++ +D D+ PL + P +SE+D+ P L Q
Sbjct: 164 YVPQNEHALSPEDP--DLALPLGHHLGRAPILSERDRRAPTLQQ 205
>gi|108798038|ref|YP_638235.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium sp. MCS]
gi|119867133|ref|YP_937085.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium sp. KMS]
gi|126433699|ref|YP_001069390.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium sp. JLS]
gi|108768457|gb|ABG07179.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium sp. MCS]
gi|119693222|gb|ABL90295.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium sp. KMS]
gi|126233499|gb|ABN96899.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium sp. JLS]
Length = 195
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 2/159 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
DSRG F + ++ + + V+ + G +RGLHF P QAK V C+ G
Sbjct: 21 DSRGSFMEWFTDREFTAFAGHRLDVRQANCSVSRAGVLRGLHFAAVPPGQAKYVTCVRGA 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVDIR SPT+G W ++ + + IY+ G H F+ L+ ++ V+Y + Y
Sbjct: 81 VFDVAVDIRVGSPTFGRWDAVLLDDRDRRSIYLSEGLGHAFLALQDDSTVMYLCSTGYDP 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ V+ D ++ I WP ++ +S++D P L+Q
Sbjct: 141 AREHTVSPTDPALGIEWPFDGELV--LSDRDAAAPTLDQ 177
>gi|315502242|ref|YP_004081129.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Micromonospora sp. L5]
gi|315408861|gb|ADU06978.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Micromonospora sp. L5]
Length = 202
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 10/180 (5%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIR 54
M I P+ I + R+ D+RG F + Y +L + +G Q N S S G +R
Sbjct: 1 MKIRPLSIEGAWEVTPRRHGDARGLFLEWYRFDRLAEAVGRPLRLAQANLSVSAR-GVVR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
G+HF P QAK V C+ G + D+ VD+R SPTYG W ++ + + +Y+ G H
Sbjct: 60 GIHFADVPPGQAKYVTCVRGAVLDVVVDVRAGSPTYGRWEAVRLDDTDRRAVYLAEGLGH 119
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
GF L + + Y + Y+ + V D + I WP P +SE+D P L +
Sbjct: 120 GFCALTDDATLSYLCSATYNPAAEHTVHPLDPDLGIDWP---AATPLLSERDAAAPRLAE 176
>gi|158312833|ref|YP_001505341.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EAN1pec]
gi|158108238|gb|ABW10435.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EAN1pec]
Length = 207
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 4/168 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+ R+ D RG F + + L+ + G + Q N S S GT+RG+H+ + P +QA
Sbjct: 13 LFTPRQHSDPRGTFLEWFRVDALESVTGHRLELAQANASVS-RAGTLRGVHYAQVPPSQA 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
K V C++GR+ D VDIR SPT+G ++ + + +Y+ G H FM L +
Sbjct: 72 KYVTCVSGRVLDCVVDIRVGSPTFGSHAAVLLDDVDRRGLYVSEGLGHAFMALTDGAAIT 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
Y + Y+ E + G+ D + + WP + P +SEKD P L+Q
Sbjct: 132 YLCSTPYTPEREFGINPLDPDLALPWPA--ELTPLLSEKDTAAPTLSQ 177
>gi|271962221|ref|YP_003336417.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptosporangium roseum DSM
43021]
gi|270505396|gb|ACZ83674.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptosporangium roseum DSM
43021]
Length = 187
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 79/154 (51%), Gaps = 3/154 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQR 60
I+ V + D RG F++T+ + + GL FVQD+ S S GT+RG+H R
Sbjct: 7 KIDGVLLFVPTPHRDDRGLFTRTFDKAVAEGAGLDFSAFVQDSQSRSRQ-GTVRGMH-GR 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AKLVRC G + D+ VD R SPT+G S+ + + +Y+P G HGF L
Sbjct: 65 SGRGEAKLVRCARGAVHDVLVDARPGSPTFGEQTSVLLDDETFVTLYVPPGLLHGFQALT 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL 154
T+V Y++ + D V + D + I WPL
Sbjct: 125 GQTDVCYRIDREHDPAEDLSVRYDDPDLRIDWPL 158
>gi|328478990|gb|EGF48483.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus
MTCC 5462]
Length = 84
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 57/80 (71%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F D+RG+F++TY+ + E G+++ F QDN S S + G +RG+H+Q PYAQ KLVR +
Sbjct: 2 FGDNRGFFTETYTREKFVEAGIKNDFNQDNQSLSAEAGVLRGMHYQMAPYAQTKLVRVVT 61
Query: 74 GRIFDIAVDIRRNSPTYGCW 93
G + D+ VDIR+ SPTYG W
Sbjct: 62 GVVEDVLVDIRKGSPTYGQW 81
>gi|23004340|ref|ZP_00047721.1| COG1898: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Magnetospirillum magnetotacticum MS-1]
Length = 198
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 89/171 (52%), Gaps = 6/171 (3%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
L R+ D RG F + +++ L+E +D+ Q N S S G +RG+H+ P QAK
Sbjct: 14 LLPRQHADDRGVFLEWFTAAALREATGRDLDLAQANASVS-RAGVVRGIHYADVPPGQAK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
V C+AG + D+ VD+R SP +G W ++ + A+ +++P G H FM LE V+Y
Sbjct: 73 YVTCVAGSVLDVVVDLRVGSPAFGRWDAVLLDAHERRAVFLPEGVGHAFMALEDGATVVY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQ 174
+ Y+ E + GV D + I WP ++PS S KD P L +
Sbjct: 133 LCSSGYAPEREHGVDPTDPELAIEWPATGPDGRALVPSFSAKDAAAPSLRE 183
>gi|117927776|ref|YP_872327.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidothermus cellulolyticus
11B]
gi|117648239|gb|ABK52341.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidothermus cellulolyticus
11B]
Length = 216
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 83/160 (51%), Gaps = 4/160 (2%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+ R++ D RG F + + + +L + +G Q Q N S S GTIRG+HF P +QA
Sbjct: 28 VFTPRQYPDERGVFLEWFRADVLSRVIGHQMAIAQSNQSVSRR-GTIRGVHFADVPPSQA 86
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
K V C G + D+ VDIR SPT+G ++ + + +YI G H FM L + V
Sbjct: 87 KYVYCARGAVLDVVVDIRVGSPTFGRLDTVRLDDVDRRAVYISEGLGHAFMALTDDAVVT 146
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
Y + Y+ E + GV D+ + I WP I P +S KD
Sbjct: 147 YLCSTGYAPEREHGVNPLDEELGIPWP--RDIEPILSAKD 184
>gi|302865678|ref|YP_003834315.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Micromonospora aurantiaca
ATCC 27029]
gi|302568537|gb|ADL44739.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Micromonospora aurantiaca
ATCC 27029]
Length = 202
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 10/180 (5%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIR 54
M I P+ I + R+ D+RG F + Y +L + +G Q N S S G +R
Sbjct: 1 MKIRPLSIEGAWEVTPRRHGDARGLFLEWYRFDRLAEAVGRPLRLAQANLSVSAR-GVVR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
G+HF P QAK V C+ G + D+ VD+R SPTYG W ++ + + +Y+ G H
Sbjct: 60 GIHFADVPPGQAKYVTCVRGAVLDVVVDVRAGSPTYGRWEAVRLDDTDRRAVYLTEGLGH 119
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
GF L + + Y + Y+ + V D + I WP P +SE+D P L +
Sbjct: 120 GFCALTDDATLSYLCSATYNPAAEHTVHPLDPDLGIDWP---AATPLLSERDAAAPRLAE 176
>gi|255327299|ref|ZP_05368373.1| dTDP-4-dehydrorhamnose reductase [Rothia mucilaginosa ATCC 25296]
gi|255295579|gb|EET74922.1| dTDP-4-dehydrorhamnose reductase [Rothia mucilaginosa ATCC 25296]
Length = 471
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 97/176 (55%), Gaps = 15/176 (8%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + + GL D VQ+N SF+ GT RG+H + P+ K V G
Sbjct: 25 DNRGWFKENWQREKMVAAGLPDFNPVQNNISFNASVGTTRGIHAE--PWD--KYVSVATG 80
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
RIF VD+R ++G V++E+ + I++P G + F TLE NT Y V D +S
Sbjct: 81 RIFGAWVDLRAGE-SFGKVVTVELGPDTA--IFVPRGVGNSFQTLEENTAYTYLVNDHWS 137
Query: 135 VEHDSGVAW---QDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLPLL 187
+ SG ++ D+++ I WP +D +SEKD+N P LN+I P E D P+L
Sbjct: 138 ADAVSGYSFLNLADETVAIDWP-IDLAKAELSEKDRNHPRLNEI-KPLEAD--PIL 189
>gi|325673208|ref|ZP_08152901.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus equi ATCC 33707]
gi|325556043|gb|EGD25712.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus equi ATCC 33707]
Length = 209
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 89/172 (51%), Gaps = 14/172 (8%)
Query: 12 RKFEDSRG----WFSQ-TYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
++F D RG WF + T+S + L LQ Q N S S G +RG+HF P QA
Sbjct: 19 KQFGDDRGVFLEWFKEPTFSEAVGHPLDLQ----QANCSVSA-AGVLRGIHFADVPPGQA 73
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
K V C+ G + D+ VDIR SPT+G W S+ + + +Y+ G H F++LE ++ V+
Sbjct: 74 KYVTCLKGAVLDVVVDIRVGSPTFGKWDSVLLDDVDRRAVYLSEGLGHAFLSLEDSSTVV 133
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQ 174
Y + Y+ + G+ D +I I WP L + +SEKD P L +
Sbjct: 134 YLCSSGYAPGREHGINPLDPAIGIEWPKLSRSGQPLEFVLSEKDCEAPSLAE 185
>gi|269794231|ref|YP_003313686.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sanguibacter keddieii DSM
10542]
gi|269096416|gb|ACZ20852.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sanguibacter keddieii DSM
10542]
Length = 204
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 18/184 (9%)
Query: 9 LKTRKFEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+ ++F D RG F + + + +E G Q N S S G +RG+HF P QAK
Sbjct: 14 ITPKQFGDPRGVFLEWFKGAPFAEEAGHALALAQANLSVSA-AGVLRGIHFADVPPGQAK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
V C G + D+ VDIR SPTYG W S+ + + IY+ G H F++LE ++ V+Y
Sbjct: 73 YVTCARGAVLDVVVDIRVGSPTYGQWDSVLLDDVDRRAIYLSEGLGHAFLSLEDDSTVLY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLL--------------DTILPSVSEKDQN--LPF 171
+ Y+ + G+ D I I WP D++ P+++E Q+ LP
Sbjct: 133 LCSAPYAPGREHGIHPLDPEIGIDWPTTARDGSPLQYELSEKDSVAPTLAEALQSGLLPS 192
Query: 172 LNQI 175
N++
Sbjct: 193 ANEV 196
>gi|297196533|ref|ZP_06913931.1| dTDP-4-deoxyglucose 3,5-epimerase [Streptomyces pristinaespiralis
ATCC 25486]
gi|297153260|gb|EFH32244.1| dTDP-4-deoxyglucose 3,5-epimerase [Streptomyces pristinaespiralis
ATCC 25486]
Length = 205
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 73/143 (51%), Gaps = 2/143 (1%)
Query: 12 RKFEDSRGWF-SQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
R D RG F S + +G Q NHS S G +RG+HF P QAK V
Sbjct: 30 RVHRDERGLFVSPLQEEAFVAAVGRPFTVAQTNHSRSAR-GVMRGVHFTTTPPGQAKYVH 88
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
C GR D+ VDIR SPT+G W ++E+ + +Y+P G H F++LE +T + Y V+
Sbjct: 89 CARGRAMDVVVDIRVGSPTFGAWDTVEMDTESFRAVYLPEGVGHAFLSLEDDTVMSYLVS 148
Query: 131 DFYSVEHDSGVAWQDKSIDITWP 153
Y + + + D ++ + WP
Sbjct: 149 TPYRADLEQAIDPLDPALGLPWP 171
>gi|68536977|ref|YP_251682.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium jeikeium
K411]
gi|260579322|ref|ZP_05847204.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium jeikeium ATCC
43734]
gi|68264576|emb|CAI38064.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium jeikeium
K411]
gi|258602451|gb|EEW15746.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium jeikeium ATCC
43734]
Length = 231
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 3/161 (1%)
Query: 16 DSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D RG F +++ ++ E LG Q N S S +RG+H P QAK V C++G
Sbjct: 38 DERGSFHESFKAEAFGEKLGYPFEVAQGNLSRS-SRNVVRGIHLADVPPGQAKFVSCLSG 96
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
I D+ VD+R SPT+G +++E+SA N +Y+P G HGF T V Y VT+ Y+
Sbjct: 97 AITDVLVDVRVGSPTFGQHITVELSAENNFSVYVPLGVGHGFRAHTDQTTVNYLVTEAYN 156
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + G+ D + + W + +S KD + P L+++
Sbjct: 157 PQREYGIDPFDAELAVAWGVTKE-QAVLSTKDDSAPSLSEV 196
>gi|16945709|dbj|BAB72040.1| AclL [Streptomyces galilaeus]
Length = 201
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 80/164 (48%), Gaps = 5/164 (3%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
FED R F+ + +F Q NHS S GT+RG+H+ P AK V C
Sbjct: 19 FEDDRDLFTSPFQEPAFVAALGHPLFPVAQSNHSRS-RRGTVRGIHYTVTPPGVAKYVYC 77
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
GR DI VDIR SPTYG W S + +Y P G H F+ LE +T + Y ++
Sbjct: 78 ARGRAIDIVVDIRVGSPTYGRWDSSVLDPEGFRAMYFPVGVGHAFIALEDDTVMSYMLSG 137
Query: 132 FYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y +H+ ++ D ++ + P+ + P +S +D P L Q+
Sbjct: 138 SYEAQHEMSLSPLDPALGL--PIPQDVAPLLSARDTAAPLLEQV 179
>gi|302607777|emb|CBW45689.1| putative dTDP-4-deoxyglucose 3,5-epimerase [Streptomyces
pristinaespiralis]
Length = 212
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 73/143 (51%), Gaps = 2/143 (1%)
Query: 12 RKFEDSRGWF-SQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
R D RG F S + +G Q NHS S G +RG+HF P QAK V
Sbjct: 30 RVHRDERGLFVSPLQEEAFVAAVGRPFTVAQTNHSRSAR-GVMRGVHFTTTPPGQAKYVH 88
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
C GR D+ VDIR SPT+G W ++E+ + +Y+P G H F++LE +T + Y V+
Sbjct: 89 CARGRAMDVVVDIRVGSPTFGAWDTVEMDTESFRAVYLPEGVGHAFLSLEDDTVMSYLVS 148
Query: 131 DFYSVEHDSGVAWQDKSIDITWP 153
Y + + + D ++ + WP
Sbjct: 149 TPYRADLEQAIDPLDPALGLPWP 171
>gi|283458590|ref|YP_003363223.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rothia mucilaginosa DY-18]
gi|283134638|dbj|BAI65403.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rothia mucilaginosa DY-18]
Length = 474
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 97/176 (55%), Gaps = 15/176 (8%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + + GL D VQ+N SF+ GT RG+H + P+ K V G
Sbjct: 25 DNRGWFKENWQREKMLAAGLPDFNPVQNNISFNASVGTTRGIHAE--PWD--KYVSVATG 80
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
RIF VD+R ++G V++E+ + I++P G + F TLE NT Y V D +S
Sbjct: 81 RIFGAWVDLRAGE-SFGKVVTVELGPDTA--IFVPRGVGNSFQTLEENTAYTYLVNDHWS 137
Query: 135 VEHDSGVAW---QDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLPLL 187
+ SG ++ D+++ I WP +D +SEKD+N P LN+I P E D P+L
Sbjct: 138 ADAVSGYSFLNLADETVAIDWP-IDLAKAELSEKDRNHPRLNEI-KPLEAD--PIL 189
>gi|226303737|ref|YP_002763695.1| dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase [Rhodococcus
erythropolis PR4]
gi|226182852|dbj|BAH30956.1| dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase [Rhodococcus
erythropolis PR4]
Length = 197
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 4/166 (2%)
Query: 12 RKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
++F D RG F + + E+ + + +Q + G +RG+HF P QAK V C
Sbjct: 18 KQFGDDRGVFLEWFREPGFSEITGRTLDLQQANCSVSAAGVLRGIHFADVPPGQAKYVTC 77
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
+ G I DIAVD+R SPT+G W S+ + + I++ G H F++LE N+ V+Y +
Sbjct: 78 VKGAILDIAVDLRVGSPTFGQWDSVLLDDVDRRAIFLSEGLGHAFLSLEDNSTVVYLCST 137
Query: 132 FYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPFLN 173
Y+ E + V D I I WP + + + ++S KD P L
Sbjct: 138 GYAPEREHEVHPLDPDIAIDWPTVGRSGEPLNITLSAKDTAAPSLQ 183
>gi|224812417|gb|ACN64855.1| PokS7 [Streptomyces diastatochromogenes]
Length = 204
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 72/139 (51%), Gaps = 2/139 (1%)
Query: 16 DSRGWF-SQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RG F S + +G V Q NHS S G +RGLHF P QAK V C G
Sbjct: 24 DARGLFVSPLQEEAFVAAVGEPFVTAQTNHSRSAR-GVLRGLHFTTTPPGQAKYVYCAQG 82
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
R D VDIR SPT+G W +E+ A + +YIP G H F+ L+ +T + Y V+ Y
Sbjct: 83 RALDAVVDIRLGSPTFGKWDIVEMDAVSYRAVYIPDGAGHAFLALDDDTVMSYLVSSAYR 142
Query: 135 VEHDSGVAWQDKSIDITWP 153
E + V D ++ + WP
Sbjct: 143 TELEQAVDPLDPALGLPWP 161
>gi|28492998|ref|NP_787159.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Tropheryma whipplei str.
Twist]
gi|28572208|ref|NP_788988.1| epimerase [Tropheryma whipplei TW08/27]
gi|28410339|emb|CAD66725.1| putative epimerase [Tropheryma whipplei TW08/27]
gi|28476038|gb|AAO44128.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Tropheryma whipplei str.
Twist]
Length = 207
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 3/160 (1%)
Query: 16 DSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
DSRG FS+ Y +L KE+G Q N SFS +RGLH+ P++QAK V C G
Sbjct: 21 DSRGSFSEVYRFDVLEKEIGYPLRVAQVNRSFSKK-AVLRGLHYSLAPHSQAKYVMCANG 79
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+ D D+R SP++G W ++ + + +YIP G H F+ L V Y + Y
Sbjct: 80 AVLDFVFDLRLGSPSFGVWDAVLLDSVGCRAVYIPEGVGHAFIALSKTATVNYLCSATYD 139
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E + + DK++++ +P + +SE+D P L +
Sbjct: 140 PEREKSINPLDKNLNLEYPFTTPEI-VLSERDAAAPTLPE 178
>gi|297160277|gb|ADI09989.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces bingchenggensis
BCW-1]
Length = 221
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 2/164 (1%)
Query: 12 RKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
R D+RG F ++Y+ +L ++ G V +Q N+S S T+RG+H R P QAK V
Sbjct: 17 RHHTDARGSFFESYAYGQLARQTGHVFVPLQVNYSVSAR-NTLRGVHGVRLPPGQAKFVT 75
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
C+ G + D+ VD+R SPT+G + + + A+ G +Y+ G HGF+ L +T + Y +
Sbjct: 76 CVRGALLDVVVDLRLGSPTFGAYDTNMLDADQGTAVYVAEGLGHGFVALTDDTCISYLCS 135
Query: 131 DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
Y + D ++ + W L T P +SEKD P L +
Sbjct: 136 TQYVPGTQIDLHPLDPALGLPWHLGLTDEPLISEKDARAPSLAE 179
>gi|297570699|ref|YP_003696473.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Arcanobacterium haemolyticum
DSM 20595]
gi|296931046|gb|ADH91854.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Arcanobacterium haemolyticum
DSM 20595]
Length = 205
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 89/182 (48%), Gaps = 9/182 (4%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M I P+ I + ++F DSRG F + + + E +++ VQ ++ GT+RG
Sbjct: 1 MLIEPLSIEGAYRITPKQFPDSRGLFLEAFKQQTFVEAVGRELDVQQVNTSVSKAGTVRG 60
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
+HF +QAK V C G + D VDIR SPT+G + S+ + + I+I G H
Sbjct: 61 IHFAEIAPSQAKYVMCPQGALLDFVVDIRVGSPTFGQYESVLLDDADRRAIFISEGLGHA 120
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPF 171
F+ LE NT Y + Y+ + GV ++ I WP +D + +SEKD P
Sbjct: 121 FIALEDNTVATYLCSAPYAPGREHGVKPTCSTLGIEWPTVDRHGNPMELLLSEKDTAAPG 180
Query: 172 LN 173
L
Sbjct: 181 LG 182
>gi|300782571|ref|YP_003762862.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Amycolatopsis mediterranei
U32]
gi|2792336|gb|AAC01732.1| dNTP-hexose 3,5 epimerase [Amycolatopsis mediterranei S699]
gi|299792085|gb|ADJ42460.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Amycolatopsis mediterranei
U32]
Length = 206
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 4/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I+ ++ ++ F D RG F + Y +L E LG + F+Q N S S +RG+H
Sbjct: 6 LAIDGAHVVTSQSFGDERGDFFEVYRQDVLTEALGYRPRFLQTNVSTSCR-NVVRGVHGA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P AK V C+ G + D VD+R SPT+G W + ++ + G +Y+ G H F++L
Sbjct: 65 MTPPGLAKFVTCLRGSLLDFVVDVRTGSPTFGQWDMIVLNQHGGTAVYVEEGLGHAFVSL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +T V Y ++D Y V D I + PL P +SE+D P L +
Sbjct: 125 EDDTCVQYLLSDLYRPAEVLTVQPLDPEIGL--PLNLPGEPILSERDAAAPTLRE 177
>gi|41581811|gb|AAS07755.1| putative dNTP-hexose 3,5-epimerase [Amycolatopsis mediterranei
S699]
Length = 214
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 4/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I+ ++ ++ F D RG F + Y +L E LG + F+Q N S S +RG+H
Sbjct: 14 LAIDGAHVVTSQSFGDERGDFFEVYRQDVLTEALGYRPRFLQTNVSTSCR-NVVRGVHGA 72
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P AK V C+ G + D VD+R SPT+G W + ++ + G +Y+ G H F++L
Sbjct: 73 MTPPGLAKFVTCLRGSLLDFVVDVRTGSPTFGQWDMIVLNQHGGTAVYVEEGLGHAFVSL 132
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +T V Y ++D Y V D I + PL P +SE+D P L +
Sbjct: 133 EDDTCVQYLLSDLYRPAEVLTVQPLDPEIGL--PLNLPGEPILSERDAAAPTLRE 185
>gi|289766572|ref|ZP_06525950.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. D11]
gi|289718127|gb|EFD82139.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. D11]
Length = 119
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 70/109 (64%), Gaps = 5/109 (4%)
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
++ + G I DI VD+R NS T+G ++++E+++ N ++IP G AHGF+TLE NTE+ Y
Sbjct: 1 MINILKGSILDIVVDLRENSETFGKYLAIELNSKNKKVLFIPKGVAHGFLTLEDNTEIFY 60
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS----VSEKD-QNLPF 171
K +FY+ + + G+ W DK ++I+W + +SEKD +N+ F
Sbjct: 61 KCDNFYNPQSEIGIIWNDKDLNISWNFKKYGINENELIISEKDKKNMSF 109
>gi|2326951|gb|AAB66649.1| RmlC [Mycobacterium tuberculosis]
Length = 203
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 1/159 (0%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
DSRG F + + + + V+ + G +RGLHF + P +QAK V C++G
Sbjct: 23 DSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRGLHFAQLPPSQAKYVTCVSGS 82
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+ VDIR SPT+G W S+ + + IY+ G AHGF+ L+ N+ V+Y + Y+
Sbjct: 83 VFDVVVDIREGSPTFGRWDSVLLD-DQDRNIYVSDGLAHGFLALQDNSTVMYLCSAEYNP 141
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ + D ++ D PS+S++D P +
Sbjct: 142 QRQHTICATDPTLASIRRWSDGGCPSLSDRDAAAPSFEE 180
>gi|294817646|ref|ZP_06776288.1| Staurosporine biosynthesis 3,5-epimerase StaE [Streptomyces
clavuligerus ATCC 27064]
gi|326446650|ref|ZP_08221384.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Streptomyces clavuligerus
ATCC 27064]
gi|294322461|gb|EFG04596.1| Staurosporine biosynthesis 3,5-epimerase StaE [Streptomyces
clavuligerus ATCC 27064]
Length = 233
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 5/163 (3%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHFQRPPYAQ 65
+ R F D RG F + E +F Q NHS S G +RGLHF P
Sbjct: 13 VFTPRVFPDDRGLFLSPFQEAAFTEAHGGPLFPVAQSNHSLSRR-GVVRGLHFTVTPPGT 71
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AK V C G DI VDIR SPT+G W ++ + + Y+P G H F+ LE +T +
Sbjct: 72 AKYVHCARGAALDIVVDIRVGSPTFGRWDAVLMDQRDHRAAYLPVGVGHAFVALEDDTVM 131
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
Y +++ Y E++ ++ D ++ + P+ I P +SE+D+
Sbjct: 132 SYLLSESYVPENELALSVLDPALGL--PVPRGIEPVLSERDRT 172
>gi|159037934|ref|YP_001537187.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salinispora arenicola
CNS-205]
gi|157916769|gb|ABV98196.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salinispora arenicola
CNS-205]
Length = 200
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 5/162 (3%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVF-VQD-NHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
D RG F+ Y +F V+D +H+ S G +RG+HF P +AK V C
Sbjct: 20 RDERGLFASPYQEPAFTATFGWPLFPVRDLSHNVSAR-GVLRGIHFTSTPPGRAKYVYCP 78
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
G++ D +D+R SPT+GCW S E+ + IYIP G H F++L ++ ++Y ++
Sbjct: 79 YGKVQDFLIDLRVGSPTFGCWDSTELGGDTCRAIYIPVGVGHAFLSLVDDSMIVYAMSKG 138
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
Y E + ++ D ++ + PL I P S++D+ P L +
Sbjct: 139 YVAEDELAISPLDPALGL--PLPAGITPLQSDRDRAAPTLAE 178
>gi|325002410|ref|ZP_08123522.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudonocardia sp. P1]
Length = 201
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 4/178 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I+ + + F D RG F+ + + +E LG +Q N S S G +RG+H+
Sbjct: 6 LGISGAWLFEPTVFPDPRGRFTAPFQGPVFREALGFDLSVMQSNQSVS-SRGVVRGVHYA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK + AG + D+ VDIR SPT+G + +++ A++ +Y+ G H F +
Sbjct: 65 DVPPGQAKYLYIAAGAVRDVIVDIRVGSPTFGQFEVVDLDADSMRAVYLSEGLGHAFQAM 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
T V Y + Y+ E + G+ D + I W + + P +SEKD+ P L + ++
Sbjct: 125 TDGTVVGYLCSTSYAPEREHGITPIDPQLAIPW--VAGVEPVLSEKDREAPTLAEAEA 180
>gi|315937139|gb|ADU56146.1| hypothetical protein CA915-25 [uncultured organism CA915]
Length = 200
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 8/180 (4%)
Query: 1 MNINPVRILKTRKFE-----DSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIR 54
M + P I +FE DSRG F+ Y E LG V+D G +R
Sbjct: 1 MTVVPSVIDGAFRFEPTVYPDSRGLFASPYQDPAFAEALGRPLFPVRDVSHNRSARGVLR 60
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
G+H+ P +AK V C G + D +D+R SPTYG W + E+S +N +YIP G H
Sbjct: 61 GIHYTAVPPGRAKYVYCPYGEVRDYLIDLRLGSPTYGRWEATELSGDNCRALYIPVGVGH 120
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
F++L ++ V+Y +++ Y ++ V+ D I ++ P I S++D+ P L +
Sbjct: 121 AFLSLRDDSVVVYLMSEGYVPANELAVSALDPEIGLSLPQGVAI--QQSDRDRGAPTLAE 178
>gi|24575097|gb|AAL06668.1| dNTP-4-keto-6-deoxyglucose epimerase [Streptomyces globisporus]
Length = 192
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 4/162 (2%)
Query: 14 FEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
F D RG F + + + + +G Q N + S G +RG+HF QAK C+
Sbjct: 17 FRDERGSFREWFQGEPFRRTVGHSFDLRQANCAIS-SHGVLRGIHFAGGVPGQAKYFSCL 75
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
G +F VDIR SPT+G W ++E+ NG +Y+ G GF+TL ++Y +
Sbjct: 76 RGSVFGAVVDIRVGSPTFGGWRTVELGEENGRALYVSAGLGFGFLTLSDEAVIVYLCSAA 135
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
Y + G+ D + I WP I P +SE+D + P L +
Sbjct: 136 YDPRLEHGLNPLDPEVGIAWP--PEITPILSERDSSAPGLAE 175
>gi|27753583|dbj|BAC55217.1| 3,5-epimerase [Streptomyces sp. TP-A0274]
Length = 206
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 79/158 (50%), Gaps = 5/158 (3%)
Query: 12 RKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHFQRPPYAQAKLV 69
R F D RG F Y E +F Q NHS S G +RG+H+ P AK V
Sbjct: 17 RVFPDDRGKFVSPYQEAAFTEAHGAPLFPVAQTNHSVSRR-GVVRGVHYTATPPGTAKYV 75
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKV 129
C GR DI VDIR SPT+G W ++ + + Y P G H F+ LE +T + Y +
Sbjct: 76 YCARGRALDIVVDIRVGSPTFGHWDAVLMDQLDHRASYFPVGVGHAFVALEDDTVMSYML 135
Query: 130 TDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+ Y EH+ ++ D ++ + P+ + P +SE+D+
Sbjct: 136 SGSYVAEHELSLSVLDPALGL--PIPTDLEPILSERDR 171
>gi|213964897|ref|ZP_03393096.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium amycolatum
SK46]
gi|213952433|gb|EEB63816.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium amycolatum
SK46]
Length = 229
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 93/199 (46%), Gaps = 25/199 (12%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA------QAKLV 69
DSRG F + Y E F + + G +RGLHF A QAKLV
Sbjct: 25 DSRGSFHEWYRLDAFAEATGYPFFPEQANMSVSAAGVVRGLHFADVSTAPDGHPGQAKLV 84
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKV 129
C AG I DIAVD+RR S T+G E+ + +Y+P G HGF++L ++ + Y
Sbjct: 85 TCPAGHILDIAVDLRRGSDTFGKVEVFELDSKTRRVVYLPNGIGHGFVSLADDSVLTYLT 144
Query: 130 TDFYSVEHDSGVAWQDKSIDITWPLL---------DTILPSVSEKDQNLPFLNQIDS--- 177
+ Y+ E + V+ QD ++ I L D IL SE+DQ P + Q ++
Sbjct: 145 STGYNPEAERAVSIQDSTLGIDLAALLAKGGLTEADMIL---SERDQKAPTIEQFEAEGN 201
Query: 178 --PFEYDGLPLLSLNMERD 194
P E+D L NM RD
Sbjct: 202 KLPSEFDCKDL--ENMARD 218
>gi|326383444|ref|ZP_08205131.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gordonia neofelifaecis NRRL
B-59395]
gi|326197850|gb|EGD55037.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gordonia neofelifaecis NRRL
B-59395]
Length = 203
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 89/187 (47%), Gaps = 17/187 (9%)
Query: 1 MNINPVRILKTRKFE-----DSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIR 54
M++ P+ I F D RG F + + + ++ E +G + Q N S S G IR
Sbjct: 1 MDVRPLTIDGAWAFTPVQHGDGRGLFLEAFKADVVAETIGHRLDLAQVNTSVSA-AGVIR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
G+HF P QAK V C AG + D+ VDIR SPT+G W ++ + + +Y+ G H
Sbjct: 60 GVHFSDVPPGQAKYVTCSAGAVLDVVVDIRVGSPTFGRWDAVLLDDLDRRAVYLSEGLGH 119
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-------LDTILPSVSEKDQ 167
F +L+ + V Y + Y + G+ D I I WP L+ +L SEKD
Sbjct: 120 AFCSLQDGSTVTYLCSTGYRPGAEHGIDPMDPEIGIAWPKVARDGSPLEFVL---SEKDA 176
Query: 168 NLPFLNQ 174
P L Q
Sbjct: 177 AAPSLVQ 183
>gi|325002444|ref|ZP_08123556.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudonocardia sp. P1]
Length = 208
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 4/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I+ + F D RG F+ + +E LG Q N S S G IRG+HF
Sbjct: 13 LGIDGAWTFEPATFPDHRGSFTAPFQGPAFREALGFDLTVAQTNRSVSHR-GVIRGVHFA 71
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK + AG + D+ VD+R SPT+G + +E+ A +Y+ G H F L
Sbjct: 72 DVPPGQAKYLHVAAGAVRDVIVDLRVGSPTFGRYEVVELDAAVPRAVYLAEGLGHAFQAL 131
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
T V Y + Y+ + + G++ D + + W D + P +S+KD++ P L
Sbjct: 132 ADGTVVEYLCSTPYAPDREHGISPLDPELALPW--ADGLEPVLSDKDRDAPTLAH 184
>gi|291539460|emb|CBL12571.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Roseburia
intestinalis XB6B4]
Length = 181
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 89/165 (53%), Gaps = 13/165 (7%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
FED RG+ S Y + ++ Q N +S + T+RGLHFQ +AQAK+V C+
Sbjct: 23 FEDFRGYLSVPYDRDVPFQV------CQINQGYSREAFTLRGLHFQMGEHAQAKMVSCLH 76
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G IF++AVD+R +G S +S N +YIP GFAHG++TLE +T + + V +
Sbjct: 77 GSIFNVAVDLRPGK-CFGYSYSEVLSFENRKMMYIPKGFAHGYLTLEDDTLMQWCVDQDF 135
Query: 134 SVEHDSGVAWQDKSI---DITWPLLDTILPSVSEKDQNLPFLNQI 175
E V + D + WP + I +SEKD+N +L ++
Sbjct: 136 CGETAQAVRYDDPDLVWKGEAWPKGEYI---ISEKDKNAMWLGEL 177
>gi|291534898|emb|CBL08010.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Roseburia
intestinalis M50/1]
Length = 175
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 89/165 (53%), Gaps = 13/165 (7%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
FED RG+ S Y + ++ Q N +S + T+RGLHFQ +AQAK+V C+
Sbjct: 17 FEDFRGYLSVPYDRDVPFQV------CQINQGYSREAFTLRGLHFQMGEHAQAKMVSCLH 70
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G IF++AVD+R +G S +S N +YIP GFAHG++TLE +T + + V +
Sbjct: 71 GSIFNVAVDLRPGK-CFGYSYSEVLSFENRKMMYIPKGFAHGYLTLEDDTLMQWCVDQDF 129
Query: 134 SVEHDSGVAWQDKSI---DITWPLLDTILPSVSEKDQNLPFLNQI 175
E V + D + WP + I +SEKD+N +L ++
Sbjct: 130 CGETAQAVRYDDPDLVWKGEAWPKGEYI---ISEKDKNAMWLGEL 171
>gi|407886|emb|CAA51671.1| unnamed protein product [Streptomyces griseus]
gi|742317|prf||2009361D ORF 4 in daunorubicin synthesis gene
Length = 212
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 5/161 (3%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFV--QDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
+ D RG F + + ++ +F Q NHS S G +RG+H+ P AK V C
Sbjct: 19 YPDDRGLFVSPFREQGFTKVVGHPLFPVRQTNHSLS-GRGVVRGVHYTVTPPGTAKYVYC 77
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
GR DI VD+R SPTYG W ++E+ +Y P G H F+ LE +T + Y ++
Sbjct: 78 ARGRSLDIIVDVRVGSPTYGRWDAVELDPGEFRAVYFPVGVGHAFVALEEDTVMSYMLSG 137
Query: 132 FYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
Y H+ V+ D ++ + P DT P +SE+D+ P L
Sbjct: 138 EYVPSHELAVSALDPALGLPVP-ADT-EPLLSERDRVAPDL 176
>gi|32492535|gb|AAP85353.1| putative 3-5-epimerase [Streptomyces griseoruber]
Length = 226
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 3/155 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDC-GTIRGLHFQRPPYAQAKLVRCI 72
F D RG F + ++F SFS G +RG+H+ R P AK V C
Sbjct: 19 FRDPRGLFVSPFQRDAFVAATGHELFGVAQTSFSVSRRGAVRGIHYTRVPPGTAKYVHCP 78
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
GR D+ VD+R SPT+G W S+ + ++ +Y+P G H F L +T + Y ++
Sbjct: 79 RGRALDMVVDLRLGSPTFGAWDSVVLDQDDCRALYLPVGVGHAFAALTDDTLMAYTLSTA 138
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
Y+ E++ V+ D + + PL + P +SE+D+
Sbjct: 139 YAPENELAVSVHDPRLRL--PLPRDVPPLLSERDR 171
>gi|125625383|dbj|BAF46778.1| putative dTDP-4-keto-6-deoxyglucose 3,5-epimerase [Nocardia
brasiliensis]
Length = 186
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 6/166 (3%)
Query: 16 DSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D RG F +T+ +S+ K +G +Q N S S G +RG+H+ P QAK V C+ G
Sbjct: 21 DERGVFVETFKASEFEKAVGRTFDLLQVNTSTSA-AGVLRGIHYTEDPPGQAKYVSCVRG 79
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
D+ VD+R SPT+G W S I + +++ G H + LE ++ V Y T Y+
Sbjct: 80 AFLDVVVDLRPGSPTFGTWDSAVIDDVDRRSVFLSEGLGHALLALEDDSTVNYLCTLEYT 139
Query: 135 VEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQID 176
E+D G+ D + I WP + ++ S S KD P L+ ++
Sbjct: 140 PEYDRGLDAFDPQLGIDWPTVGRDGRPLVFSRSPKDAAAPRLSSLN 185
>gi|302523922|ref|ZP_07276264.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp. AA4]
gi|302432817|gb|EFL04633.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp. AA4]
Length = 182
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
D RG F++T+ +++ E GL F QD+ S S G +RG+H R +AKLVRC
Sbjct: 20 HDDRGLFTRTFDTEIAAEHGLNAAAFQQDSQSRS-RLGVLRGMH-GRSGRGEAKLVRCAR 77
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G + D+ VDIR S T+G + + +YIP GF HGF L +V Y++ +
Sbjct: 78 GAVHDVLVDIRPGSATFGRQQAFRLDDVEFAHLYIPPGFLHGFQVLTEYADVCYRIDRPH 137
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPS 161
D V + D + I WPL ++L +
Sbjct: 138 DPAEDLAVRYDDPDLAIDWPLPVSVLSA 165
>gi|53794562|gb|AAU93789.1| dTDP-4-keto-6-deoxyglucose 3,5-epimerase [Aeromicrobium erythreum]
Length = 197
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 15 EDSRGWFSQTYSSK-LLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
D+RG F+ + + +G Q NH S D G +RG+HF P Q+K V C A
Sbjct: 20 HDARGVFASPLQEEAFVAAVGHPFPVAQTNHIVS-DRGVLRGVHFTASP-GQSKYVHCAA 77
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
GR D+ +D+R +SPT+G W ++E+ +Y P G AH FM LE T + Y V+ Y
Sbjct: 78 GRALDVMIDVRTDSPTFGTWEAVELDPRRCNALYFPIGTAHAFMALEPGTIMSYLVSTPY 137
Query: 134 SVEHDSGVAWQDKSIDITWP 153
E + + D + + WP
Sbjct: 138 DAELELAIDPFDPELALPWP 157
>gi|7688729|gb|AAF67516.1|AF170880_23 NovW [Streptomyces caeruleus]
Length = 207
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 80/175 (45%), Gaps = 5/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + D RG F Y + + +G Q N S S G +RG+HF
Sbjct: 6 LGIEGVWEITPEQRADPRGVFLDWYHVDRFAEAIGRPLRLAQANLSVSVR-GVVRGIHFV 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G +FD+ VD+R SPTYGCW + + +Y+ G HGF +
Sbjct: 65 DVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAI 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ Y + Y + GV D + I WP T P +S +DQ+ L +
Sbjct: 125 SDEATLCYLSSGTYDPATEHGVHPLDPELAIDWP---TGTPLLSPRDQDALLLAE 176
>gi|54022170|ref|YP_116412.1| putative dTDP-6-deoxy-4-ketoglucose epimerase [Nocardia farcinica
IFM 10152]
gi|54013678|dbj|BAD55048.1| putative dTDP-6-deoxy-4-ketoglucose epimerase [Nocardia farcinica
IFM 10152]
Length = 182
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 2/154 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I ++ R F D RG F++ + +S+ K G Q N S S G +RG+H+
Sbjct: 6 LSIPGAWVVTPRVFHDERGSFAEAFKASEFEKATGRPMDLRQVNCSVSA-AGVLRGIHYT 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G D+ VD+RR SPTYG W S+ + + +++ G H ++L
Sbjct: 65 ENPPGQAKYVTCVRGAFLDVVVDLRRGSPTYGRWDSVLLDDVDRRSVFVSEGLGHAILSL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP 153
E ++ V Y + Y+ E D + D ++ I WP
Sbjct: 125 EDDSTVTYLCSLEYTPELDGEIDAFDPTLAIEWP 158
>gi|134097320|ref|YP_001102981.1| dTDP-4-deoxyglucose 3,5-epimerase [Saccharopolyspora erythraea NRRL
2338]
gi|133909943|emb|CAM00055.1| dTDP-4-deoxyglucose 3,5-epimerase [Saccharopolyspora erythraea NRRL
2338]
Length = 200
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 72/140 (51%), Gaps = 2/140 (1%)
Query: 15 EDSRGWF-SQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
+D RG F S + +G + Q NH S G +RGLHF P Q K V C
Sbjct: 20 QDRRGLFVSPLQDEAFVGAVGHRFPVAQMNHIVSAR-GVLRGLHFTTTPPGQCKYVYCAR 78
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
GR D+ VDIR SPT+G W ++E+ + +Y P G AH F+ LE +T + Y V+ Y
Sbjct: 79 GRALDVIVDIRVGSPTFGKWDAVEMDTEHFRAVYFPRGTAHAFLALEDDTLMSYLVSTPY 138
Query: 134 SVEHDSGVAWQDKSIDITWP 153
E++ + D ++ + WP
Sbjct: 139 VAEYEQAIDPFDPALGLPWP 158
>gi|88192518|pdb|2C0Z|A Chain A, The 1.6 A Resolution Crystal Structure Of Novw: A
4-Keto-6- Deoxy Sugar Epimerase From The Novobiocin
Biosynthetic Gene Cluster Of Streptomyces Spheroides
Length = 216
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 80/175 (45%), Gaps = 5/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + D RG F Y + + +G Q N S S G +RG+HF
Sbjct: 15 LGIEGVWEITPEQRADPRGVFLDWYHVDRFAEAIGRPLRLAQANLSVSVR-GVVRGIHFV 73
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G +FD+ VD+R SPTYGCW + + +Y+ G HGF +
Sbjct: 74 DVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAI 133
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ Y + Y + GV D + I WP T P +S +DQ+ L +
Sbjct: 134 SDEATLCYLSSGTYDPATEHGVHPLDPELAIDWP---TGTPLLSPRDQDALLLAE 185
>gi|291009629|ref|ZP_06567602.1| dTDP-4-deoxyglucose 3,5-epimerase [Saccharopolyspora erythraea NRRL
2338]
gi|2599288|gb|AAB84077.1| EryBVII [Saccharopolyspora erythraea NRRL 2338]
gi|2665341|emb|CAA72086.1| putative TDP-4-keto-6-deoxyglucose 3,5 epimerase or 5-epimerase
[Saccharopolyspora erythraea NRRL 2338]
Length = 193
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 72/140 (51%), Gaps = 2/140 (1%)
Query: 15 EDSRGWF-SQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
+D RG F S + +G + Q NH S G +RGLHF P Q K V C
Sbjct: 13 QDRRGLFVSPLQDEAFVGAVGHRFPVAQMNHIVSAR-GVLRGLHFTTTPPGQCKYVYCAR 71
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
GR D+ VDIR SPT+G W ++E+ + +Y P G AH F+ LE +T + Y V+ Y
Sbjct: 72 GRALDVIVDIRVGSPTFGKWDAVEMDTEHFRAVYFPRGTAHAFLALEDDTLMSYLVSTPY 131
Query: 134 SVEHDSGVAWQDKSIDITWP 153
E++ + D ++ + WP
Sbjct: 132 VAEYEQAIDPFDPALGLPWP 151
>gi|10179846|gb|AAG13911.1|AF263245_7 TDP-4-keto-6-deoxyhexose 3,5-epimerase [Micromonospora megalomicea
subsp. nigra]
Length = 201
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 5/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKL-LKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + F D RG F Y + + LG V + G +RG+HF
Sbjct: 6 LGIEGVFTFTPQTFADERGVFGTAYQEDVFVAALGRPLFPVAQVSTTRSRRGVVRGVHFT 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P + AK V C GR D AVDIR SPT+G +E+SA + + +Y+P G H F++L
Sbjct: 66 TMPGSMAKYVYCARGRAMDFAVDIRPGSPTFGRAEPVELSAESMVGLYLPVGMGHLFVSL 125
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQ 174
E +T ++Y ++ Y + + V D + + P LD ++ SE+D+ P L +
Sbjct: 126 EDDTTLVYLMSAGYVPDKERAVHPLDPELALPIPADLDLVM---SERDRVAPTLRE 178
>gi|256380270|ref|YP_003103930.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinosynnema mirum DSM
43827]
gi|255924573|gb|ACU40084.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinosynnema mirum DSM
43827]
Length = 198
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 87/162 (53%), Gaps = 6/162 (3%)
Query: 14 FEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
F D RG+F + S + G + Q NHS S G IRGLH+ P QAK V C
Sbjct: 19 FPDDRGFFVAPFQESAFERATGHRLRVAQVNHSQSRR-GVIRGLHYADVPPGQAKFVHCP 77
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
GR+ D+ VD+R SPT+G W ++E+SA +Y+P GF H M LE +T Y ++
Sbjct: 78 RGRLLDVVVDVRVGSPTFGQWDAVELSAEKFNGVYLPEGFGHALMALEDDTVTAYLCSEG 137
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
++ + + GV S+D+ WP + P +SEKD P L Q
Sbjct: 138 FNPKAERGV--DPLSLDLPWPA--GVEPVLSEKDAQAPSLAQ 175
>gi|268680389|ref|YP_003304820.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfurospirillum deleyianum
DSM 6946]
gi|268618420|gb|ACZ12785.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfurospirillum deleyianum
DSM 6946]
Length = 190
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 7/169 (4%)
Query: 16 DSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RG+ + + + K +G + F QD S S G IRGLH +AQ+KLV + G
Sbjct: 21 DNRGFVFEAFKKESFNKFVGYEVDFCQDIISHS-KYGVIRGLHTNTLNFAQSKLVSVLRG 79
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+I D+AVD R SPT+ VS+E+ Q+++P GF HGF L V K+ ++
Sbjct: 80 KILDVAVDFRVGSPTFAKVVSVELDDVENKQLFVPKGFLHGFSVLSNKAIVNMKIDRYFE 139
Query: 135 VEHDSGVAWQDKSIDITWPLL--DTILPSVSEKDQNLPFLNQIDSPFEY 181
GV + D +++ W + D IL + D L + SPF+Y
Sbjct: 140 SGESIGVRYNDCDLNVEWKIKPQDIIL---GKADIGLKMFSDAVSPFDY 185
>gi|254520585|ref|ZP_05132641.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium sp. 7_2_43FAA]
gi|226914334|gb|EEH99535.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium sp. 7_2_43FAA]
Length = 181
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 81/147 (55%), Gaps = 6/147 (4%)
Query: 34 GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCW 93
GL F ++ ++ + G +RG+HFQ PP KL+ CI G I D+ VD+R+ S TYG +
Sbjct: 40 GLSTEFKEEYYAIA-KPGVVRGMHFQLPPEEHDKLITCIIGEIQDVVVDLRKESKTYGKY 98
Query: 94 VSLEISANNGLQIYIPTGFAHG-FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITW 152
+E++ +N IY+P G AHG ++ + + + YKVT + E G+ W S++I W
Sbjct: 99 TMVELNESNKNLIYVPRGCAHGYYIKGKKDALIYYKVTKPFIRELRGGIHWD--SLNIPW 156
Query: 153 PLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ + V +D+ P +SPF
Sbjct: 157 DFSNEV--EVESEDKVWPKFEGFNSPF 181
>gi|157384620|gb|ABV49598.1| NDP-hexose 3,(5)-epimerase [Streptomyces eurythermus]
Length = 211
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 4/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I +++ D RG F + + + + G VQ N + + G +RG+HF
Sbjct: 11 LGIEGAWVVEPEVHPDRRGEFHEWFQGERFRRATGHTLPLVQANVAVNRR-GALRGIHFT 69
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
R P QAK C+ G ++ VDIR SPT+G W ++ + +N +Y+ G F L
Sbjct: 70 RLPPGQAKYSACVQGAGIEVVVDIRTGSPTFGRWEAVPVDEHNRTAVYVAAGLGRAFFAL 129
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
T +IY + Y+ D ++ D + I WP D I P +S +D P L + +
Sbjct: 130 TDRTTLIYLCSSGYAPRLDHAISPLDPGLAIAWP--DGIEPLLSAQDAGAPTLAEAE 184
>gi|238062701|ref|ZP_04607410.1| 3,5-epimerase [Micromonospora sp. ATCC 39149]
gi|237884512|gb|EEP73340.1| 3,5-epimerase [Micromonospora sp. ATCC 39149]
Length = 200
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDC-GTIRGLHFQRPPYAQAKLVRCI 72
+ D RG F Y L ++ +F S+S GT+RGLHF R P AK V C
Sbjct: 19 YPDYRGVFLSPYLDSLFRDTVGYPLFPVRQTSYSVSRRGTLRGLHFTRTPPGTAKFVSCP 78
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
GR+ D+ +D+R SPT+G W S+ + + +Y+P G AH F+ L +T + Y ++
Sbjct: 79 HGRVLDLVLDVRVGSPTFGKWDSVVLDSEEFQAVYLPVGVAHMFVALADDTVMSYVLSQE 138
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
Y E++ + D + + P+ + + P +SE+D+
Sbjct: 139 YVFENELALDALDPGLGL--PIPEDVEPILSERDRT 172
>gi|269219067|ref|ZP_06162921.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinomyces sp. oral taxon
848 str. F0332]
gi|269211214|gb|EEZ77554.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinomyces sp. oral taxon
848 str. F0332]
Length = 203
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 94/187 (50%), Gaps = 17/187 (9%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIR 54
M I ++I + ++F D RG F + Y SS K +G + Q N S S GT+R
Sbjct: 1 MQIRELKIPGAWEITPKQFPDDRGVFLEAYKSSAFEKAVGHRLDLRQANVSVS-KAGTVR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
G+HF P +QAK V C G + D A+DIR SPT+G W S+ + + IY+ G H
Sbjct: 60 GIHFADVPPSQAKYVVCPRGAVLDFAIDIRVGSPTFGQWDSVLLDDVDRRAIYLSEGLGH 119
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-------LDTILPSVSEKDQ 167
F+ LE ++ V+Y + Y+ + GV+ + + +P L+ +L SEKD
Sbjct: 120 AFIALEDDSTVMYMCSAEYAPGREHGVSPVCPEVALDFPKTGRDGSPLELLL---SEKDT 176
Query: 168 NLPFLNQ 174
P L +
Sbjct: 177 AAPNLAE 183
>gi|134102850|ref|YP_001108511.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Saccharopolyspora erythraea
NRRL 2338]
gi|291008758|ref|ZP_06566731.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Saccharopolyspora erythraea
NRRL 2338]
gi|133915473|emb|CAM05586.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Saccharopolyspora erythraea
NRRL 2338]
Length = 201
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 3/164 (1%)
Query: 12 RKFEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
R F D RG F Y + ++ G Q NHS S +RG+HF P QAK +
Sbjct: 17 RSFPDHRGLFVAPYQEAAFVEATGHALRVAQTNHSVSAR-NVVRGVHFSDVPPGQAKYIY 75
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
C G + D +DIR SPT+G W ++ + + +Y+ G H F L +T V Y +
Sbjct: 76 CAQGAMLDFVIDIRVGSPTFGRWEAVRLDSAEYRAVYLAEGLGHAFAALTDDTAVAYFCS 135
Query: 131 DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
Y+ + G+ D + + W LD P +S+KD++ P L +
Sbjct: 136 TPYNPSAEHGINPLDPDLGLPWGDLDG-EPILSDKDRDAPGLAE 178
>gi|30795018|ref|NP_851468.1| putative NDP-4-keto-6-deoxyhexose 3,5-epimerase [Streptomyces
rochei]
gi|30698391|dbj|BAC76504.1| putative NDP-4-keto-6-deoxyhexose 3,5-epimerase [Streptomyces
rochei]
Length = 209
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSF--DC------GTIRGLHFQRPPYAQ 65
F DSRG F TY E HSF C G +RG+HF P
Sbjct: 30 FPDSRGLFVTTYQQPQFTE--------TTGHSFPVFQTCQSHSRRGVVRGVHFTSTPPGM 81
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AK V C GR D VD+R SPT+G W ++++ + Y+P G H F+ LE +T +
Sbjct: 82 AKHVYCGRGRALDFVVDLRVGSPTFGKWDTVQLGGESFRSTYLPVGVGHVFVALEDDTTM 141
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+Y ++ Y E++ V+ D ++ + +D + P +SE+D P L
Sbjct: 142 VYLMSGPYVAENELAVSPLDPALGLPV-RIDDVEPVLSERDVAAPSL 187
>gi|15131509|emb|CAC48377.1| putative 3,5 epimerase [Amycolatopsis balhimycina]
Length = 205
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 5/158 (3%)
Query: 12 RKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHFQRPPYAQAKLV 69
R F D RG F + + E +F Q NHS S G +RG+H+ P AK V
Sbjct: 17 RVFPDDRGLFVSPFQEEAFAEARGGPLFRVAQTNHSMS-KRGVVRGIHYTMTPPGTAKYV 75
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKV 129
C G+ DI VDIR SPT+G W ++ + + +Y P G H F+ LE +T + Y +
Sbjct: 76 YCARGKALDIVVDIRVGSPTFGRWDAVLLDQRDHRAMYFPVGVGHAFVALEDDTAMWYLL 135
Query: 130 TDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+ Y ++ ++ D ++ + P+ + P +SE+DQ
Sbjct: 136 STAYVARNELALSVLDPALGL--PIDADVDPILSERDQ 171
>gi|295839154|ref|ZP_06826087.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp. SPB74]
gi|197695604|gb|EDY42537.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp. SPB74]
Length = 205
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 5/155 (3%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
FED RG F+ Y E +F Q NHS S GT+RG+H+ P AK V C
Sbjct: 23 FEDERGLFTSPYQEPAFVEALGHPLFRVAQSNHSKS-RRGTVRGIHYTVTPPGVAKYVYC 81
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
GR DI VDIR SPT+G W S + +Y P G H F+ LE +T + Y ++
Sbjct: 82 ARGRAIDIVVDIRVGSPTFGRWDSAVLDPEGFGAMYFPVGVGHAFIALEDDTVMSYMLSG 141
Query: 132 FYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
Y +++ ++ D ++ + P+ + P +S +D
Sbjct: 142 SYEADNELSLSPLDPALGL--PIPTDVEPLLSARD 174
>gi|24940618|gb|AAN65245.1|AF329398_35 dTDP-4-keto-6-deoxyglucose 3,5-epimerase [Streptomyces
roseochromogenes subsp. oscitans]
Length = 198
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 81/175 (46%), Gaps = 5/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + R+ D+RG F Y + E+G Q N S S G +RG+HF
Sbjct: 6 LGIEGVWEITPRQHADARGVFLDWYCVDRFAAEVGRPLRLAQANLSVSAR-GVLRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G +FD+ VD+R S TYG W + + +Y+ G HGF +
Sbjct: 65 DVPPGQAKYVTCVRGAVFDVVVDLRVGSSTYGRWEGTRLDDVSRRAVYLSEGIGHGFCAI 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ Y + Y+ + GV D + I WP P +S +DQ+ L++
Sbjct: 125 SDEATLCYLCSQTYNPASEHGVHPLDPELAINWP---AGTPLLSARDQDALLLSE 176
>gi|62737781|gb|AAX98197.1| sugar epimerase [Streptomyces aizunensis]
Length = 204
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 79/159 (49%), Gaps = 4/159 (2%)
Query: 15 EDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
+D RG F + + S+ + G + Q N S S G +RG+HF P QAK V C+
Sbjct: 18 DDERGTFLEVFQSQAFELATGRRLELAQVNCSVSRR-GVVRGVHFADLPPGQAKYVTCVR 76
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G + D+ VD+R SPTY W ++E+ + +++ G H F + + V+Y T Y
Sbjct: 77 GAVRDVIVDLRTGSPTYRAWEAVELDDRDRRAVFLSEGLGHAFQAITDDATVVYLTTSGY 136
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ + GV D + ITW L + P +S KD P L
Sbjct: 137 APGREHGVHPLDPELGITW--LPGMEPLLSPKDAVAPTL 173
>gi|2916806|emb|CAA12011.1| SnogF [Streptomyces nogalater]
Length = 201
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 83/168 (49%), Gaps = 5/168 (2%)
Query: 12 RKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHFQRPPYAQAKLV 69
R F D+RG F + + E +F Q NHS S G +RG HF P AK V
Sbjct: 17 RVFPDARGCFVSPFQQTPVAEALGHRLFPVAQTNHSRSRR-GVVRGAHFTLTPPGIAKYV 75
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKV 129
C GR D +DIR SPT+G W S+ + N +Y P G AH F LE +T + Y +
Sbjct: 76 YCARGRARDYVIDIRVGSPTFGQWDSVVLDDRNFRAMYFPVGVAHAFAALEDDTVMSYML 135
Query: 130 TDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ Y +++ ++ D + + P +L +SE+D P L +++S
Sbjct: 136 SGEYVADNELALSVFDPDLALELPGDTPLL--LSERDTAAPTLRELES 181
>gi|111021079|ref|YP_704051.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus jostii RHA1]
gi|110820609|gb|ABG95893.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus jostii RHA1]
Length = 195
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 6/171 (3%)
Query: 9 LKTRKFEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+ R+F D RG F + + S+ +G Q N S S G +RG+HF P QAK
Sbjct: 14 ITPRQFGDDRGVFLEWFKGSEFEAAVGHSLELAQANCSVSA-AGVLRGIHFTDNPPGQAK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
V C+ G D+ VD+R SP +G W S+ I + +Y+P G H ++LE + V+Y
Sbjct: 73 YVTCVKGAFLDVIVDLRVGSPMFGQWDSVLIDDADRRAVYLPAGVGHAILSLEDASTVMY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPFLNQ 174
+ Y+ D + D + I WP + + +SEKD P L Q
Sbjct: 133 LCSIEYTPALDHDLHPLDPELGIDWPTVGRDGSPLTFQLSEKDSAAPSLQQ 183
>gi|311113106|ref|YP_003984328.1| dTDP-4-dehydrorhamnose reductase [Rothia dentocariosa ATCC 17931]
gi|310944600|gb|ADP40894.1| dTDP-4-dehydrorhamnose reductase [Rothia dentocariosa ATCC 17931]
Length = 478
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 96/176 (54%), Gaps = 15/176 (8%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + ++ GL D VQ+N SF+ GT RG+H + P+ K V +G
Sbjct: 25 DNRGWFKENWQREKMRAAGLPDFDPVQNNISFNTSVGTTRGIHAE--PWD--KYVSVASG 80
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
RIF VD+R ++G V++E+ + I++P G + F TLE NT Y V D +S
Sbjct: 81 RIFGAWVDLRAGE-SFGRVVTVELGPDTA--IFVPRGVGNAFQTLEENTAYTYLVNDHWS 137
Query: 135 VEHDSGVAW---QDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLPLL 187
+ + ++ D+S I WP +D +SEKD+ P L++I +P D PLL
Sbjct: 138 ADALTAYSFLNLADESTAIDWP-IDLAQAELSEKDRKHPRLHEI-TPLTPD--PLL 189
>gi|229492537|ref|ZP_04386340.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus erythropolis
SK121]
gi|229320523|gb|EEN86341.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus erythropolis
SK121]
Length = 201
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 11/185 (5%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIR 54
M I P++I + ++F D+RG F + + SS G Q N S S + G++R
Sbjct: 1 MEIRPLKIAGAWEITPKQFGDNRGVFLEWFKSSAFTAATGRTLDLAQANCSVS-EAGSLR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
G+HF P QAK + C+ G D+ VD+R SPT+G W ++ I + +++ G H
Sbjct: 60 GIHFTDNPPGQAKYITCVKGAFLDVVVDLRVGSPTFGEWDAVAIDDVDRRAVFLAEGLGH 119
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLP 170
++LE + V+Y + YS D + D + I WP D + +S KD P
Sbjct: 120 AILSLEDGSTVMYLCSVEYSPHLDRDLDPFDPELAIEWPRTDRKGNPLTYELSAKDAAAP 179
Query: 171 FLNQI 175
L +
Sbjct: 180 SLATL 184
>gi|118469056|ref|YP_885893.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium smegmatis str.
MC2 155]
gi|310947299|sp|A0QSK5|RMLC_MYCS2 RecName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; AltName:
Full=Thymidine diphospho-4-keto-rhamnose 3,5-epimerase;
AltName: Full=dTDP-4-keto-6-deoxyglucose 3,5-epimerase;
AltName: Full=dTDP-6-deoxy-D-xylo-4-hexulose
3,5-epimerase; AltName: Full=dTDP-L-rhamnose synthase
gi|118170343|gb|ABK71239.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium smegmatis str.
MC2 155]
Length = 201
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 93/177 (52%), Gaps = 12/177 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I PV L+T DSRG F + ++ E G Q Q N S S G +RG+HF +
Sbjct: 13 EITPV--LRT----DSRGLFFEWFTDAGFTEFAGHQFDMRQANCSVSAR-GVLRGVHFAQ 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P +QAK V C+ G +FD+ VDIR SPT+G W ++ + + IYI G H F+ L+
Sbjct: 66 VPPSQAKYVTCVRGAVFDVVVDIRVGSPTFGQWDAVLLDDKDRRSIYISEGLGHAFLALD 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
++ V+Y + Y+ + + V D I+ WP + ++ +S++D P L + +
Sbjct: 126 DDSTVMYLCSAPYAPQREHTVRPTDFGIE--WPEVPELI--LSDRDAQAPSLAEAQA 178
>gi|300743861|ref|ZP_07072881.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Rothia
dentocariosa M567]
gi|300380222|gb|EFJ76785.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Rothia
dentocariosa M567]
Length = 478
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 15/176 (8%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + ++ GL D VQ+N SF+ GT RG+H + P+ K V +G
Sbjct: 25 DNRGWFKENWQREKMRAAGLPDFDPVQNNISFNTSVGTTRGIHAE--PWD--KYVSVASG 80
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
RIF VD+R ++G V++E+ + I++P G + F TL+ NT Y V D +S
Sbjct: 81 RIFGAWVDLRAGE-SFGRVVTVELGPDTA--IFVPRGVGNAFQTLQENTAYTYLVNDHWS 137
Query: 135 VEHDSGVAW---QDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLPLL 187
+ + ++ D+S+ I WP +D +SEKD+ P L++I +P D PLL
Sbjct: 138 ADALTAYSFLNLADESVAIDWP-IDLAQAELSEKDRKHPRLHEI-TPLTPD--PLL 189
>gi|257413304|ref|ZP_04742626.2| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseburia intestinalis L1-82]
gi|257204066|gb|EEV02351.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseburia intestinalis L1-82]
Length = 181
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 13/165 (7%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
FED RG+ S Y + ++ Q N +S + T+RGLHFQ +AQAK+V C+
Sbjct: 23 FEDFRGYLSVPYDRDVPFQV------CQINQGYSREAFTLRGLHFQMGEHAQAKMVSCLH 76
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G IF++AVD+R +G S +S N +YIP GFAHG++TLE +T + + V +
Sbjct: 77 GSIFNVAVDLRPGK-CFGYSYSEVLSFENRKMMYIPKGFAHGYLTLEDDTLMQWCVDQDF 135
Query: 134 SVEHDSGVAWQDKSI---DITWPLLDTILPSVSEKDQNLPFLNQI 175
E V + D + W + I +SEKD+N +L ++
Sbjct: 136 CGETAQAVRYDDPDLVWKGEAWTKGEYI---ISEKDKNAMWLGEL 177
>gi|2246638|gb|AAB63046.1| putative epimerase [Streptomyces peucetius]
Length = 208
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 79/163 (48%), Gaps = 5/163 (3%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFV--QDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
F D RG F + +F Q NHS S G +RG+H+ P AK V C
Sbjct: 19 FPDERGLFVSPFREDAFTAAVGHPLFPVRQTNHSRSRR-GVVRGVHYTVTPPGSAKYVYC 77
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
GR DI VD+R SPTYG W ++E+ +Y P G H F+ LE +T + Y ++
Sbjct: 78 ARGRSLDIVVDVRVGSPTYGRWDAVELEPREFRAVYFPVGVGHAFVALEDDTVMSYMLSG 137
Query: 132 FYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
Y ++ V+ D ++ + P+ + P +S +D+ P L Q
Sbjct: 138 EYVQANELAVSVLDPALGL--PVPGDLEPLLSGRDRAAPPLEQ 178
>gi|237786450|ref|YP_002907155.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium
kroppenstedtii DSM 44385]
gi|237759362|gb|ACR18612.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium
kroppenstedtii DSM 44385]
Length = 237
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 81/173 (46%), Gaps = 13/173 (7%)
Query: 16 DSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D RG F + Y + E LG Q N S S G +RG+H P QAK+V C AG
Sbjct: 34 DQRGSFHEWYKADDFAEALGYPFFPEQANMSVSAR-GVVRGIHLAEVPPGQAKMVTCPAG 92
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+ DI VD+R+ S TYG + + ++ +N +Y+P G HGF + NT Y + Y
Sbjct: 93 ALSDIIVDLRKGSSTYGKHIVVPLNQDNHAVVYLPVGIGHGFAAHQDNTVATYLTSTAYD 152
Query: 135 VEHDSGVAWQDKSIDITWPLL-----------DTILPSVSEKDQNLPFLNQID 176
+ GV D ++ I L T+ P SEKD+ P L +D
Sbjct: 153 PSREFGVRITDPALGIDCQALLNSDESSDQHSATVDPIFSEKDRIAPLLADVD 205
>gi|83272138|gb|ABC00735.1| CosL [Streptomyces olindensis]
Length = 208
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 81/158 (51%), Gaps = 7/158 (4%)
Query: 12 RKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHFQRPPYAQAKLV 69
R+F D RG F + + ++ + F Q NHS S GT+RG+HF P AK V
Sbjct: 17 RQFRDHRGLFVSPFQLEAFQQALGRPHFPVAQTNHSIS-RRGTVRGIHFTVTPPGTAKYV 75
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKV 129
C GR DI VD+R SPT+ W ++E+ + Y P G H F+ LE +T + Y +
Sbjct: 76 YCARGRALDIVVDLRVGSPTFMQWDAVEMDQVHFRASYFPVGVGHAFVALEDDTVMSYLL 135
Query: 130 TDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKD 166
T Y E++ V D+ + + P LDT+ SE+D
Sbjct: 136 TGPYVAENELAVDIFDRELGVRLPAGLDTVQ---SERD 170
>gi|328886046|emb|CCA59285.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces venezuelae ATCC
10712]
Length = 202
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDC-GTIRGLHFQRPPYAQAKLVRCI 72
F+DSRG F+ Y + + +F + S + GT+RG+HF P AK V C
Sbjct: 23 FKDSRGLFASPYQGDVFAGQLGRPLFQVEQVSHNLSARGTLRGVHFTATPPGMAKYVYCP 82
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
GR+ D +D+R SPT+G WV E+ A +Y+P G H F++L+ ++ +Y ++
Sbjct: 83 YGRLRDFLIDLRVGSPTFGQWVMNELDAETSRALYVPVGVGHAFVSLQDDSMCVYVMSQG 142
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
Y ++ + D ++ + P D + +S++D+ P L +
Sbjct: 143 YVPANELALNPLDPALGLDLP--DDVELILSDRDKIAPTLAE 182
>gi|269127004|ref|YP_003300374.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermomonospora curvata DSM
43183]
gi|268311962|gb|ACY98336.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermomonospora curvata DSM
43183]
Length = 208
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 6/165 (3%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHFQ-RPPYAQAKLVR 70
F D+RG + + +G F Q HS S G +RG+HF PP AK V
Sbjct: 19 FRDARGQVVTPFHGEGFSRVGGHRAFPVAQTIHSVSRR-GVVRGVHFTVTPPGRTAKYVF 77
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
C GR+ DI VD+R SPT+G + ++ + ++ +Y+P G H F+ L + + Y ++
Sbjct: 78 CPHGRVLDIVVDLRLGSPTFGRYDAVPLGPDDCRAVYLPVGVGHAFVALRDGSVMSYLLS 137
Query: 131 DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ ++ E++ ++ D + + P+ I P +SE+D+ P L Q+
Sbjct: 138 ECFTPENERELSVFDPRLRL--PIPSDIEPILSERDRKAPTLEQV 180
>gi|307328090|ref|ZP_07607270.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces violaceusniger
Tu 4113]
gi|306886209|gb|EFN17215.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces violaceusniger
Tu 4113]
Length = 198
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F Y+ + + NH GT+RG+H+ P QAK+V C +G
Sbjct: 21 DERGAFVAHYTEAAFAAAVGHPLRLGQNHHSVSRRGTVRGVHYADVPPGQAKMVTCTSGE 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+ D+ VD+R SPT+G W S+ + + +Y+ G H F+ L +T Y S
Sbjct: 81 LLDVVVDLRMGSPTFGHWDSVRLDPVSYRAVYLEEGLGHAFIALRDDTVAAY----LNSA 136
Query: 136 EHDSGVAWQ----DKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E++ G + D ++ + WP L VS++D+N P L + +
Sbjct: 137 EYNPGAEHEIDPFDPALGLPWPTDLEYL--VSQRDRNAPGLAEAE 179
>gi|15077643|gb|AAK83288.1|AF355466_1 putative TDP-4-keto-6-deoxyglucose 3,5 epimerase [Saccharopolyspora
spinosa]
Length = 202
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 3/175 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I + F D RG F + + + G Q NHS S IRG+HF
Sbjct: 6 LDITGAYEFTPKAFPDHRGLFVAPFQEAAFIDATGHPLRVAQTNHSVSAR-NVIRGVHFS 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C G + D+ +DIR SPT+G W ++ + +Y+ G H F L
Sbjct: 65 DVPPGQAKYVYCPQGALLDVVIDIRVGSPTFGRWEAVRLDDTEYRAVYLAEGLGHAFAAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+T + Y + Y+ + G+ D + + W LD P +SEKD+ P L +
Sbjct: 125 TDDTVMTYLCSTPYTPGAEHGIDPFDPELALPWSDLDG-EPVLSEKDRTAPSLAE 178
>gi|84496974|ref|ZP_00995828.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Janibacter sp. HTCC2649]
gi|84383742|gb|EAP99623.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Janibacter sp. HTCC2649]
Length = 197
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 9/179 (5%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIR 54
M + P+ I + R+F D RG F +++ LL + LG + +Q N S S GT+R
Sbjct: 1 MQVQPLAIEGAFVVTPRQFPDDRGVFLESFRGDLLAQHLGHRPDIIQTNVSVS-SRGTVR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
G+HF P Q K + +AG + D VD+R SPT+G + + +Y+ G H
Sbjct: 60 GVHFADIPPGQGKFITVLAGSLIDFIVDLREGSPTFGLVEQVLLDTVKRRAVYLTEGLGH 119
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
F LE T +Y T Y+ + G+ D I + P + ++S KD+ P L
Sbjct: 120 AFCALEDRTTAMYLCTATYNPATEHGIHPLDPEIGLQIP--TDVETTLSAKDKAAPTLR 176
>gi|302868467|ref|YP_003837104.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Micromonospora aurantiaca
ATCC 27029]
gi|315505157|ref|YP_004084044.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Micromonospora sp. L5]
gi|302571326|gb|ADL47528.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Micromonospora aurantiaca
ATCC 27029]
gi|315411776|gb|ADU09893.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Micromonospora sp. L5]
Length = 210
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 5/165 (3%)
Query: 12 RKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHFQRPPYAQAKLV 69
R F D RG F + E +F Q NHS S G +RG HF P AK V
Sbjct: 21 RVFPDDRGIFVSPFQETAFVEALGHPLFPVAQTNHSRSRK-GVVRGAHFTLTPPGIAKYV 79
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKV 129
C G+ D VDIR SPT+G + + + +Y+P G AH F LE +T V Y +
Sbjct: 80 YCARGKTIDFVVDIRVGSPTFGQFDQVLLDQEAFRAVYLPVGVAHAFAALEDDTVVSYML 139
Query: 130 TDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+D Y H+ V D ++++ PL + +S++D++ P + +
Sbjct: 140 SDGYVEAHEKAVNVLDPALNL--PLPTGVERVLSDRDRSAPTIEE 182
>gi|5305789|gb|AAD41820.1|AF147703_6 putative NDP-hexose 3-epimerase TylJ [Streptomyces fradiae]
Length = 205
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 2/174 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I +++ D RG F + S + L V + G +RG+HF
Sbjct: 8 LGIEGAWVIQPEIHPDRRGEFHAWFQSSEFRRLTGHSFSVPQVNIAVSRKGALRGIHFSE 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P QAK C+ G ++ VDIR SPTYG W ++ + N +Y+P G F+ L
Sbjct: 68 VPPGQAKYSACVQGAGVEVVVDIRLGSPTYGQWRAVPVDEYNRTAVYVPAGLGRAFVALT 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
T ++Y + Y+ + V D + I WP +L +SE+D P L +
Sbjct: 128 DRTTLVYLCSSEYAARREHAVNPLDPDLAIAWPEDVELL--LSERDTRAPTLAE 179
>gi|317502876|ref|ZP_07960975.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella salivae DSM 15606]
gi|315666012|gb|EFV05580.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella salivae DSM 15606]
Length = 102
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 77 FDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVE 136
D+AVDIR++SPT+G +V +E+S N Q++IP GFAHGF+ L YKV + Y+ +
Sbjct: 1 MDVAVDIRKSSPTFGKYVMVELSEENKRQLFIPRGFAHGFLVLSDEAIFTYKVDNVYAPQ 60
Query: 137 HDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
H++ + W D+ I I WP +D+ SEKD
Sbjct: 61 HEASIRWNDEQIHIEWP-IDSKDVLTSEKD 89
>gi|317124308|ref|YP_004098420.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Intrasporangium calvum DSM
43043]
gi|315588396|gb|ADU47693.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Intrasporangium calvum DSM
43043]
Length = 199
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 5/156 (3%)
Query: 12 RKFEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
R+F D RG F++ + + +L + LG + Q N S S G +RG+HF P +QAK V
Sbjct: 17 RQFHDDRGTFAEGFRADRLAEALGHEMRVRQTNISVS-QAGALRGIHFAALPPSQAKFVT 75
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
+G D +DIR SPT+G W S+ + A + +Y+ G H LE + +Y +
Sbjct: 76 VTSGVFLDFVIDIRVGSPTFGQWDSVRLDAVDRRAVYVAEGLGHALACLE-DGVAVYLCS 134
Query: 131 DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ ++ + GV D ++ + P + +P VS+KD
Sbjct: 135 EVFNPAAERGVNPLDPAVGLALP--EGFVPVVSDKD 168
>gi|262200610|ref|YP_003271818.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gordonia bronchialis DSM
43247]
gi|262083957|gb|ACY19925.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gordonia bronchialis DSM
43247]
Length = 206
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIR 54
M + P+ I L + D+RG F++ + + LL E +G + Q N S S G +R
Sbjct: 1 MQVRPLSIDGAWELTPVQHGDARGLFAEAFKADLLAEVIGHRFELAQVNLSVSA-AGVLR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
G+HF P QAK V C G D+ +DIR SPT+G ++ I + +Y+ G H
Sbjct: 60 GVHFADVPPGQAKYVSCARGAFLDVIIDIRVGSPTFGAHDTVLIDDADRRAVYLSEGLGH 119
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP 153
LE N+ V Y + Y+ + G+ D + I WP
Sbjct: 120 AICALEDNSTVTYLCSAGYNPSAEHGINPLDPDLGIDWP 158
>gi|315445634|ref|YP_004078513.1| dTDP-4-dehydrorhamnose reductase [Mycobacterium sp. Spyr1]
gi|315263937|gb|ADU00679.1| dTDP-4-dehydrorhamnose reductase [Mycobacterium sp. Spyr1]
Length = 451
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 85/163 (52%), Gaps = 10/163 (6%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + + GL D VQ+N SF+ GT RG H + P+ KLV AG
Sbjct: 32 DNRGWFKENWQREKMVTAGLPDFGPVQNNISFNDAIGTTRGFHAE--PWD--KLVSVAAG 87
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
RIF VD+R S TYG + E+ A+ +++P G + F TLE NT Y V D YS
Sbjct: 88 RIFGAWVDLRSGS-TYGTSFTAELDASRA--VFVPRGVGNAFQTLESNTAYTYLVNDHYS 144
Query: 135 VEHD-SGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ V D + I WP + +S KD+ P L+++D
Sbjct: 145 PDAAYVSVNLADPQVGIEWP-IPLARAELSGKDRANPRLSEVD 186
>gi|226363369|ref|YP_002781151.1| dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase [Rhodococcus opacus
B4]
gi|226241858|dbj|BAH52206.1| dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase [Rhodococcus opacus
B4]
Length = 193
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 6/171 (3%)
Query: 9 LKTRKFEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+ R+F D RG F + + S+ +G Q N S S G +RG+H+ P QAK
Sbjct: 14 ITPRQFGDDRGVFLEWFKGSEFEAAVGHPLDLAQANCSVSA-AGVLRGIHYTDNPPGQAK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
V C+ G D+ VD+R SP +G W S+ I + +Y+P G H ++LE + V+Y
Sbjct: 73 YVTCVKGAFLDVIVDLRVGSPMFGQWDSVLIDDVDRRAVYLPAGVGHAILSLEDASTVMY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPFLNQ 174
+ Y+ D + D + I WP + + +SEKD P L Q
Sbjct: 133 LCSIEYTPALDHDLHPLDPDLGIDWPTVGRDGSPLTFQLSEKDSAAPSLQQ 183
>gi|256028659|ref|ZP_05442493.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. D11]
Length = 110
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 65/99 (65%), Gaps = 5/99 (5%)
Query: 78 DIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEH 137
DI VD+R NS T+G ++++E+++ N ++IP G AHGF+TLE NTE+ YK +FY+ +
Sbjct: 2 DIVVDLRENSETFGKYLAIELNSKNKKVLFIPKGVAHGFLTLEDNTEIFYKCDNFYNPQS 61
Query: 138 DSGVAWQDKSIDITWPLLDTILPS----VSEKD-QNLPF 171
+ G+ W DK ++I+W + +SEKD +N+ F
Sbjct: 62 EIGIIWNDKDLNISWNFKKYGINENELIISEKDKKNMSF 100
>gi|145594749|ref|YP_001159046.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salinispora tropica CNB-440]
gi|145304086|gb|ABP54668.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salinispora tropica CNB-440]
Length = 203
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 7/170 (4%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHFQRPPYAQ 65
+ F D RG F + + Q NHS S G +RG+H+ P
Sbjct: 13 VFTPEVFSDHRGLFVSPFQRLSFTAANGGPILPVAQTNHSMS-RRGVVRGVHYTSTPPGV 71
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AK V C G DI VD+R SPT+G W ++++++ +Y P G H F++L T +
Sbjct: 72 AKYVYCAVGEAIDIIVDVRVGSPTFGTWDAVQMNSQEFRAMYFPVGVGHAFVSLADGTVM 131
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQ 174
Y +T Y EH+ V+ D ++ + P L+TI +S++D+ P L +
Sbjct: 132 SYMLTGSYVPEHERVVSAFDPALGLPIPTDLETI---ISDRDRVGPSLAE 178
>gi|296137807|ref|YP_003645050.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Tsukamurella paurometabola
DSM 20162]
gi|296025941|gb|ADG76711.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Tsukamurella paurometabola
DSM 20162]
Length = 191
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 7/170 (4%)
Query: 12 RKFEDSRGWFSQTYSSKLLKELGLQDV--FVQDNHSFSFDCGTIRGLHFQRPPYAQAKLV 69
++F D RG F + + + +E + Q N S S G +RG+H+ P QAK V
Sbjct: 19 QQFGDDRGRFLEWFKASEFEEATGAPMPELQQANCSVSA-AGVLRGVHYTLTPPGQAKYV 77
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKV 129
C+ G D+ VD+RR+SPT+G W ++ + + +Y+P G H ++LE + V+Y
Sbjct: 78 TCVRGAFLDVVVDLRRDSPTFGTWDTVLLDDVDRRAVYLPAGLGHAILSLEDRSTVMYLC 137
Query: 130 TDFYSVEHDSGVAWQDKSIDITWPLL---DTILPSV-SEKDQNLPFLNQI 175
+ Y+ + D + D + I WP T L V S KD+ P L ++
Sbjct: 138 SVEYAPDVDRELDAFDPDLAIDWPTEGRDGTPLTYVRSAKDEAAPSLREV 187
>gi|325963884|ref|YP_004241790.1| dTDP-4-dehydrorhamnose reductase [Arthrobacter phenanthrenivorans
Sphe3]
gi|323469971|gb|ADX73656.1| dTDP-4-dehydrorhamnose reductase [Arthrobacter phenanthrenivorans
Sphe3]
Length = 482
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 86/165 (52%), Gaps = 14/165 (8%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
DSRGWF + + + + LGL D VQ+N S++ GT RG+H + P+ K + G
Sbjct: 29 DSRGWFKENWQREKMLALGLPDFRPVQNNVSYNEKAGTTRGIHAE--PWD--KFISVATG 84
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+IF VD+R P++G + E+ + I+IP G + F TLE NT Y V D +S
Sbjct: 85 KIFGAWVDLREG-PSFGAVFTCELDPSQA--IFIPRGVGNAFQTLEDNTAYTYLVNDHWS 141
Query: 135 VEHDSGVAW---QDKSIDITWPL-LDTILPSVSEKDQNLPFLNQI 175
+ + D++ I WP+ LD VSEKD+ P LN +
Sbjct: 142 ADAQGQYTFLNLADEASAIAWPVPLDQA--EVSEKDRTHPRLNDV 184
>gi|73695997|gb|AAZ80804.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Arcobacter butzleri]
Length = 116
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
CI G I D+AVD R S ++G VS+E+++ Q++IP GF HGF L + V+ KV
Sbjct: 2 CIKGEILDVAVDFRVGSASFGKVVSIELNSEENKQLFIPRGFLHGFSVLSKDALVMIKVD 61
Query: 131 DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
+++++ GV + D+ ++I W + + VSE D+NL +SPF Y+
Sbjct: 62 RYFALDESIGVRYNDEDLNIDWKIKKESVI-VSEADKNLLAFKDTNSPFMYN 112
>gi|153875696|ref|ZP_02003381.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Beggiatoa sp. PS]
gi|152067839|gb|EDN66618.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Beggiatoa sp. PS]
Length = 200
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 90/169 (53%), Gaps = 16/169 (9%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLK---ELGLQD--VFVQDNHSFSFDCGTIRG 55
+ I ++++K +F D RG+F++ + E+ FVQ N SFS +RG
Sbjct: 9 LTIPDIKVIKFARFCDHRGYFTEPFRKSDFANHPEMSFMKGVEFVQANESFS-KSKVVRG 67
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEI----SANNGLQIYIPTG 111
LHFQ PY KLVR I GR+ DI +DIR+NSPT G ++ ++ A+ I++P G
Sbjct: 68 LHFQWNPY-MGKLVRTIKGRMVDIVLDIRKNSPTQGKIIAYDMPNQAEAHFSEWIWVPPG 126
Query: 112 FAHG-FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL 159
FAHG F T E E Y + YS ++G++ + D+ W L D L
Sbjct: 127 FAHGNFFTEESMIE--YFCSGEYSPGCEAGIS--PIAPDLDWSLCDQAL 171
>gi|19551582|ref|NP_599584.1| dTDP-4-dehydrorhamnose 3,5-epimerase or related enzyme
[Corynebacterium glutamicum ATCC 13032]
gi|62389231|ref|YP_224633.1| dTDP-4-dehydrorhamnose 3,5-epimerase, dTDP-dehydrorhamnose
reductase [Corynebacterium glutamicum ATCC 13032]
gi|21323098|dbj|BAB97726.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Corynebacterium glutamicum ATCC 13032]
gi|41324565|emb|CAF19047.1| DTDP-4-DEHYDRORHAMNOSE 3,5-EPIMERASE, dtdp-dehydrorhamnose
reductase [Corynebacterium glutamicum ATCC 13032]
Length = 453
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 85/159 (53%), Gaps = 15/159 (9%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + LGL D VQ+N SF+ GT RG+H + P+ K V G
Sbjct: 27 DNRGWFKENWQRTKMTNLGLPDFGPVQNNMSFNATAGTTRGMHAE--PWD--KFVSVAVG 82
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+F VD+R S TYG V+ +I+ + G +Y+P G A+GF LE T Y V D +S
Sbjct: 83 SVFGAWVDLRAGSSTYGNVVTQKITPDVG--VYVPRGVANGFQALEDGTLYTYLVNDHWS 140
Query: 135 VEHDSGVAWQDKSID-ITWPLLDTILPSVSEKDQNLPFL 172
+ + + +++ I WPL + +SEKD+ P L
Sbjct: 141 PD----AHYANVNLNMIDWPL---PITEISEKDKKHPAL 172
>gi|258651651|ref|YP_003200807.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nakamurella multipartita DSM
44233]
gi|258554876|gb|ACV77818.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nakamurella multipartita DSM
44233]
Length = 200
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 81/160 (50%), Gaps = 4/160 (2%)
Query: 16 DSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D RG F + + + L+E +G Q N S S GT+RG+HF P QAK V C G
Sbjct: 21 DPRGVFLEWFKVERLEEAVGHPLTLAQANLSVS-RAGTLRGVHFSDVPPGQAKYVTCPRG 79
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+ D VD+R SPT+G + + + +YI G H F+ LE NT + Y + YS
Sbjct: 80 AVLDYMVDLRVGSPTFGVCDVVRLDGEHRRAVYISEGLGHAFVALEDNTTLTYLCSTGYS 139
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ GV D ++++ PL + + +S+KD P L +
Sbjct: 140 PGREHGVNPLDPALNL--PLPEGVDFLLSDKDSAAPTLAE 177
>gi|50954292|ref|YP_061580.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leifsonia xyli subsp. xyli
str. CTCB07]
gi|50950774|gb|AAT88475.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leifsonia xyli subsp. xyli
str. CTCB07]
Length = 201
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 3/163 (1%)
Query: 13 KFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
+ D RG F + Y L+E +G Q N S S G++RG+HF P +QAK V
Sbjct: 18 QHADDRGLFFEFYRFDRLEEAVGHSLDLKQGNTSVS-RRGSVRGIHFADIPPSQAKYVMA 76
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
G + D +DIR SPT+G W S+ + + +Y+ G H F+ L + V Y VTD
Sbjct: 77 PRGAVLDFVIDIRLGSPTFGQWDSVLLDDKDRRALYVAEGLGHCFVALTADATVSYLVTD 136
Query: 132 FYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
Y+ + G+ D I + +P+ + L +S KD + P L +
Sbjct: 137 VYTPTREHGINPLDSDIALAFPVPEDEL-LLSPKDTDAPGLAE 178
>gi|284992554|ref|YP_003411108.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geodermatophilus obscurus DSM
43160]
gi|284065799|gb|ADB76737.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geodermatophilus obscurus DSM
43160]
Length = 198
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 4/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + +L D+RG F++ Y + +L + G Q NHS S G +RG+HF
Sbjct: 4 LAVGDAYVLDLVPHGDARGRFTEWYRADVLAGVVGHGLPLAQANHSVSAR-GVLRGVHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C AGR+ D+ VD+R SPT+G ++ + + +Y+ G H F++L
Sbjct: 63 LVPPGQAKYVYCPAGRVLDVVVDVRVGSPTFGVHDAVVLDSEQPRAVYLAEGLGHAFLSL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ V Y V+ Y + GV+ D ++D+ WP D + +S KDQ P L +
Sbjct: 123 ADGSSVTYLVSSGYDPAREFGVSPVDPALDLPWP--DDVEFELSAKDQQAPTLAE 175
>gi|16082676|gb|AAL14254.1| NDP-4-keto-6-deoxyhexose 5-epimerase [Streptomyces venezuelae ATCC
10712]
Length = 197
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 3/123 (2%)
Query: 14 FEDSRGWFSQTYSSKLLK-ELGLQDVFV-QDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
F+DSRG F+ Y + +LG V Q +H+ S GT+RG+HF P AK V C
Sbjct: 19 FKDSRGLFASPYQGDVFAGQLGRPLFQVNQVSHNLSAR-GTLRGVHFTATPPGMAKYVYC 77
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
GR+ D +D+R SPT+G WV E+ A +Y+P G H F++L+ ++ +Y ++
Sbjct: 78 PYGRLRDFLIDLRVGSPTFGQWVMNELDAETSRALYVPVGVGHAFVSLQDDSMCVYVMSQ 137
Query: 132 FYS 134
YS
Sbjct: 138 GYS 140
>gi|315937040|gb|ADU56049.1| hypothetical protein CA37-26 [uncultured organism CA37]
Length = 203
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
+ DSRG F+ Y E + +F V+D G +RG+H+ P +AK V C
Sbjct: 22 YADSRGLFASPYQDPAFAEALDRPLFPVRDVSHNRSARGVLRGIHYTATPPGRAKYVYCP 81
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
G++ D VD+R SPT+G W ++S +N +YIP G H F++L ++ V+Y +++
Sbjct: 82 YGQVQDYLVDLRIGSPTFGRWEMTDLSGDNCRALYIPVGVGHAFLSLRDDSVVVYVMSEG 141
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
Y ++ ++ D I + P+ + S++D P L +
Sbjct: 142 YVSANELAISPFDPEIGL--PIPPGLAIQQSDRDAAAPTLAE 181
>gi|145294461|ref|YP_001137282.1| hypothetical protein cgR_0416 [Corynebacterium glutamicum R]
gi|140844381|dbj|BAF53380.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 450
Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + LGL D VQ+N S++ GT RG+H + P+ K V G
Sbjct: 26 DNRGWFKENWQRTKMTNLGLPDFGPVQNNMSYNATAGTTRGMHAE--PWD--KFVSVAVG 81
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+F VD+R S TYG V+ +I+ + G +Y+P G A+GF LE T Y V D +S
Sbjct: 82 SVFGAWVDLRAGSSTYGNVVTQKITPDVG--VYVPRGVANGFQALEDGTLYTYLVNDHWS 139
Query: 135 VEHDSGVAWQDKSID-ITWPLLDTILPSVSEKDQNLPFLNQ 174
+ + + +++ I WPL T +SEKD+ P L+
Sbjct: 140 PD----AHYANVNLNMIDWPLPIT---EISEKDKKHPTLDH 173
>gi|288963060|ref|YP_003453339.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Azospirillum sp. B510]
gi|288915312|dbj|BAI76795.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Azospirillum sp. B510]
Length = 169
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 7/158 (4%)
Query: 13 KFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
+FED RG + + Y+ +L + G+ F+QD+ S S +RGLH + KLV +
Sbjct: 19 RFEDFRGEYVELYNKELYHQAGITQDFIQDDISVS-SMNVLRGLHGDAKTW---KLVSAL 74
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
GR + + V+ SP Y W + +S N QI IP F +G + + YK T
Sbjct: 75 VGRFYLVVVNWDETSPQYRMWEAFTLSDRNRRQILIPPKFGNGHLVMSEYCVFHYKQTTT 134
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
Y E + W DK + I WP+ IL S +D +P
Sbjct: 135 YERESQFTIHWDDKDVGIYWPVQSPIL---SMRDAGVP 169
>gi|255025971|ref|ZP_05297957.1| hypothetical protein LmonocytFSL_05760 [Listeria monocytogenes FSL
J2-003]
Length = 99
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 60/100 (60%), Gaps = 3/100 (3%)
Query: 83 IRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVA 142
+R+ SPTYG W +S N Q+ +P GFAHGF T+ N V+YKV YS E+D+G+A
Sbjct: 1 MRKGSPTYGEWEGYILSEANKHQLLVPQGFAHGFCTITENVNVLYKVDQLYSPENDAGIA 60
Query: 143 WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
+ D ++ITWP IL S+KD P L ++ F ++
Sbjct: 61 YDDPDLNITWPTDKLIL---SDKDTKHPRLKDAENNFVWE 97
>gi|170781065|ref|YP_001709397.1| putative dTDP-sugar epimerase [Clavibacter michiganensis subsp.
sepedonicus]
gi|169155633|emb|CAQ00751.1| putative dTDP-sugar epimerase [Clavibacter michiganensis subsp.
sepedonicus]
Length = 201
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 16 DSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D RG F + Y ++E +G Q N S S G +RG+HF P QAK V+ ++G
Sbjct: 21 DDRGVFLEWYRFDEIQEAVGHPLDLRQANMSVS-RRGVVRGVHFADVPRGQAKHVKAVSG 79
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+ D VDIR SPT+G W S+ ++ +YI G H F+ L + V Y V+D Y+
Sbjct: 80 AVLDFIVDIRVGSPTFGQWDSVRLNTETHKAVYISEGLGHCFVALTDDAAVTYLVSDVYN 139
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ G+ D + + +P + P +S KD P L
Sbjct: 140 PGAEHGITPLDPELGLVFP-EEAGEPLLSPKDLEAPTL 176
>gi|4210934|gb|AAD12169.1| epimerase [Streptomyces fradiae]
Length = 205
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 2/174 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I +++ D RG F + S + L V + G G+HF
Sbjct: 8 LGIEGAWVIQPEIHPDRRGEFHAWFQSSEFRRLTGHSFSVPQVNIAVSRKGAAAGIHFSE 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P QAK C+ G ++ VDIR SPTYG W ++ + N +Y+P G F+ L
Sbjct: 68 VPPGQAKYSACVQGAGVEVVVDIRLGSPTYGQWRAVPVDEYNRTAVYVPAGLGRAFVALT 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
T ++Y + Y+ + V D + I WP +L +SE+D P L +
Sbjct: 128 DRTTLVYLCSSEYAARREHAVNPLDPDLAIAWPEDVELL--LSERDTRAPTLAE 179
>gi|214003857|gb|ACJ60977.1| VEG35 [uncultured soil bacterium]
Length = 202
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 6/159 (3%)
Query: 12 RKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHFQRPPYAQAKLV 69
R F D RG F Y E +F Q NHS S G +RG+H+ P AK V
Sbjct: 17 RVFPDDRGAFLSPYQEAAFVEAHGSPLFRVAQTNHSVS-KRGVVRGVHYTATPPGVAKYV 75
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKV 129
C G+ DI +DIR SPT+G W S+ + + +Y P G H F+ LE +T + Y +
Sbjct: 76 YCARGKALDIVIDIRVGSPTFGQWDSVLMDQQDHRALYFPVGVGHAFIALEDDTVMSYMI 135
Query: 130 TDFYSVEHDSGVAWQDKSIDITWPLLDT-ILPSVSEKDQ 167
+ Y + ++ D ++ + P+ + + P +S++D+
Sbjct: 136 SGTYVARDELALSPLDPALGL--PIETSGVEPILSDRDK 172
>gi|88855648|ref|ZP_01130311.1| dTDP-4-dehydrorhamnose 3,5-epimerase [marine actinobacterium
PHSC20C1]
gi|88814972|gb|EAR24831.1| dTDP-4-dehydrorhamnose 3,5-epimerase [marine actinobacterium
PHSC20C1]
Length = 203
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 11/183 (6%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKL 68
+ ++F D RG F + Y L+E+ + ++ ++ G +RG+H+ P Q K
Sbjct: 14 ITPKQFADDRGVFLEWYRFDKLEEVVGHPLDLRQANTSVSQRGVVRGIHYADVPPGQGKY 73
Query: 69 VRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128
V GR D VDIR SPTYG W S+ + A + +Y+ G H F+ L + + Y
Sbjct: 74 VTVTHGRGIDFVVDIRVGSPTYGQWDSVILDAVDRRAVYVAEGLGHAFIALTDDATLTYL 133
Query: 129 VTDFY--SVEHD-------SGVAWQDKSIDITWPLLDTILPSVSEK--DQNLPFLNQIDS 177
V+D Y EHD G+ + + D+ D I P+++E+ D +LP +
Sbjct: 134 VSDVYKPGAEHDINVLDPEIGLVFPPELGDLVLSPKDKIAPTLAERLADGSLPSYAAVKE 193
Query: 178 PFE 180
+E
Sbjct: 194 YYE 196
>gi|297625251|ref|YP_003687014.1| dTDP-4-dehydrorhamnose reductase / dTDP-4-dehydrorhamnose
3,5-epimerase [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296921016|emb|CBL55554.1| dTDP-4-dehydrorhamnose reductase / dTDP-4-dehydrorhamnose
3,5-epimerase [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
Length = 494
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 15/168 (8%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + LGL D VQ+N SF+ + G RG+H + P+ K + G
Sbjct: 37 DNRGWFKENWQRAKMTALGLPDFGPVQNNISFNDEVGVTRGIHAE--PWD--KFISVATG 92
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
R+F VD+R P++G + EI + G+ +Y+P G + + TLE NT Y V +S
Sbjct: 93 RVFGAWVDLREG-PSFGTVFTCEI--DPGVAVYVPWGVGNAYQTLEPNTAYTYLVNAHWS 149
Query: 135 VEHD-SGVAWQDKSIDITWPLL--DTILPSVSEKDQNLPFLNQIDSPF 179
E + + D+++ I WP+ D IL S+KD+ P L+ + +PF
Sbjct: 150 PEAKYTFLNLADETVAIDWPIALDDAIL---SDKDRAHPRLDAV-TPF 193
>gi|315937108|gb|ADU56116.1| hypothetical protein CA878-38 [uncultured organism CA878]
Length = 205
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 80/158 (50%), Gaps = 5/158 (3%)
Query: 12 RKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHFQRPPYAQAKLV 69
R F D RG F + + + +F Q NHS S G +RG+H+ P AK V
Sbjct: 17 RVFPDDRGLFISPFQEEAFVQAHGGPLFRVAQTNHSMS-KRGVVRGVHYTATPPGVAKYV 75
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKV 129
C G+ DI +D+R SPT+G W ++ + + +Y P G H F+ LE +T + Y +
Sbjct: 76 YCARGKALDIVIDLRVGSPTFGRWDAVLMDQQDHRAMYFPVGVGHAFVALEDDTVMSYMI 135
Query: 130 TDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+ Y + + ++ D ++ + P+ + P +S++D+
Sbjct: 136 SGRYVAQDELALSALDPALGL--PIDAGMAPILSDRDR 171
>gi|48425092|pdb|1OFN|A Chain A, Purification, Crystallisation And Preliminary Structural
Studies Of Dtdp-4-Keto-6-Deoxy-Glucose-5-Epimerase
(Evad) From Amycolatopsis Orientalis; The Fourth Enzyme
In The Dtdp-L-Epivancosamine Biosynthetic Pathway.
gi|48425093|pdb|1OFN|B Chain B, Purification, Crystallisation And Preliminary Structural
Studies Of Dtdp-4-Keto-6-Deoxy-Glucose-5-Epimerase
(Evad) From Amycolatopsis Orientalis; The Fourth Enzyme
In The Dtdp-L-Epivancosamine Biosynthetic Pathway.
gi|49258364|pdb|1OI6|A Chain A, Structure Determination Of The Tmp-Complex Of Evad
gi|49258365|pdb|1OI6|B Chain B, Structure Determination Of The Tmp-Complex Of Evad
gi|2894174|emb|CAA11781.1| PCZA361.16 [Amycolatopsis orientalis]
Length = 205
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 5/158 (3%)
Query: 12 RKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHFQRPPYAQAKLV 69
R F D RG Y + E +F Q HS S G +RG+H+ P AK V
Sbjct: 17 RVFADDRGLLILPYQEEAFVEAHGGPLFRVAQTIHSMS-KRGVVRGIHYTVTPPGTAKYV 75
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKV 129
C G+ DI +DIR SPT+G W S+ + + +Y+P G H F+ LE +T + Y +
Sbjct: 76 YCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDTVMSYML 135
Query: 130 TDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+ Y + + ++ D ++ + P+ + P VS++D+
Sbjct: 136 SRSYVTQDELALSALDPALGL--PIDIGVEPIVSDRDR 171
>gi|148272192|ref|YP_001221753.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147830122|emb|CAN01051.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 201
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 2/139 (1%)
Query: 16 DSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D RG F + Y +L + +G + Q N S S G +RG+HF P QAK V+ ++G
Sbjct: 21 DDRGVFLEWYRFDELERVVGHRLDLRQANMSVS-KRGVVRGVHFADVPRGQAKYVKAVSG 79
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+ D +DIR SPT+G W S+ + +YI G H F+ L + V Y V+D Y+
Sbjct: 80 AVLDFVIDIRVGSPTFGQWDSVRLDTETHKAVYISEGLGHCFVALTDDAAVTYLVSDVYN 139
Query: 135 VEHDSGVAWQDKSIDITWP 153
+ G+ D + + +P
Sbjct: 140 PGAEHGITPLDPELGLVFP 158
>gi|7329193|gb|AAF59933.1| dTDP-4-keto-6-deoxyglucose 3,5-epimerase [Streptomyces
antibioticus]
Length = 202
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 87/176 (49%), Gaps = 6/176 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++++ + D RG F + + + +E +G Q N S S G +RG+HF
Sbjct: 4 LDVDGAWLYTPEIMRDERGEFLEWFRGRTFQEKIGHPLSLAQANCSVSRK-GVLRGIHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C +G + D+ VD+RR SPT+G W ++ + A +Y+ G H FM L
Sbjct: 63 DAPPGQAKYVTCASGTVLDVVVDVRRGSPTFGRWAAVRLDAARHQGLYLAEGLGHAFMAL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQ 174
+ V+Y + Y E + V D +I I WP +D +L S KD + P L Q
Sbjct: 123 TDDATVVYLCSQPYVAEAERAVDPLDPAIGIEWPTDIDIVL---SAKDTHAPSLAQ 175
>gi|296118114|ref|ZP_06836696.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Corynebacterium ammoniagenes DSM 20306]
gi|295969000|gb|EFG82243.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Corynebacterium ammoniagenes DSM 20306]
Length = 468
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 15/173 (8%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQR 60
+I+ + I+ D+RGWF + + + + GL D VQ N SF+ G RGLH +
Sbjct: 7 DIDGLSIIHLDVHGDNRGWFKENWQRTTMGQAGLPDFGPVQHNLSFNASAGVTRGLHAE- 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ KLV G++F D+R S +YG V EI + +++P G A+GF LE
Sbjct: 66 -PWD--KLVSIAYGKVFGAWCDLREGSTSYGQLVHAEIGPDKA--VFVPRGVANGFQALE 120
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSID-ITWPLLDTILPSVSEKDQNLPFL 172
NT Y V+D +S + + ++D + WPL T +SEKD+ P L
Sbjct: 121 DNTVYSYLVSDHWSPD----AQYTAVNLDMVDWPLTPT---EISEKDRAHPQL 166
>gi|145223884|ref|YP_001134562.1| dTDP-4-dehydrorhamnose reductase [Mycobacterium gilvum PYR-GCK]
gi|315444213|ref|YP_004077092.1| dTDP-4-dehydrorhamnose reductase [Mycobacterium sp. Spyr1]
gi|145216370|gb|ABP45774.1| dTDP-4-dehydrorhamnose reductase [Mycobacterium gilvum PYR-GCK]
gi|315262516|gb|ADT99257.1| dTDP-4-dehydrorhamnose reductase [Mycobacterium sp. Spyr1]
Length = 477
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 20/167 (11%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + GL D VQ+N SF+ GT+RG+H + P+ K + +G
Sbjct: 28 DNRGWFKENWQRAKMVAAGLPDFGPVQNNISFNQAPGTLRGIHAE--PWD--KFISVGSG 83
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
RIF VD+R + PT+G + EI + +++P G + F TLE T +Y V D YS
Sbjct: 84 RIFGAWVDLR-SGPTFGTVFTAEIDPSRA--VFVPRGVGNAFQTLEPETVYVYLVNDHYS 140
Query: 135 VEHDSGVAWQ-----DKSIDITWPL-LDTILPSVSEKDQNLPFLNQI 175
GV + D+++ I WP+ LD +SEKD+ P L+++
Sbjct: 141 ----PGVGYPSLNPGDEALAIEWPIPLDRA--EMSEKDRAQPPLSEV 181
>gi|284028522|ref|YP_003378453.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Kribbella flavida DSM 17836]
gi|283807815|gb|ADB29654.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Kribbella flavida DSM 17836]
Length = 186
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 10/164 (6%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
F+D RGWF +++ ++ L++LGL + VQ+N S++ + G RG+H + K +
Sbjct: 22 FDDGRGWFKESFQAEKLEKLGLPHLEVVQNNVSYNAEVGVTRGIHAE----PWDKYISPA 77
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
GR+F VD+R P +G + E++ GL Y+P G + F TLE NT Y V
Sbjct: 78 FGRVFTAIVDLRE-GPGFGRLETFELTPRQGL--YVPRGCGNSFCTLEPNTVYNYLVNAH 134
Query: 133 YSVEHD-SGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+S + + V D I++ WPL L SEKD P L+ +
Sbjct: 135 WSPDAKYTLVNLFDPRINVPWPLPKEQL-IYSEKDAGHPLLDAV 177
>gi|326772070|ref|ZP_08231355.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Actinomyces
viscosus C505]
gi|326638203|gb|EGE39104.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Actinomyces
viscosus C505]
Length = 224
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 94/172 (54%), Gaps = 15/172 (8%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + + LGL D VQ+N SF+ + G RG+H + P+ K V G
Sbjct: 61 DNRGWFKENWQREKMLALGLPDFGPVQNNISFNNEIGVTRGIHAE--PWD--KFVSVATG 116
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
R+F VD+R P++G + EI + + +++P G + + TLE NT Y V D +S
Sbjct: 117 RVFGAWVDLRE-GPSFGAVYTCEIDPS--VAVFVPRGVGNSYQTLEPNTAYTYLVNDHWS 173
Query: 135 VEHD-SGVAWQDKSIDITWP--LLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
+ + + D+++++ WP L + IL S+KD+ P L ++ +PF G
Sbjct: 174 ADARYTFLNLADETVNVPWPIALSEAIL---SDKDKAHPRLAEV-TPFPAPG 221
>gi|45934787|gb|AAS79451.1| putative 3-epimerase in D-allose pathway [Streptomyces bikiniensis]
Length = 196
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 12/162 (7%)
Query: 16 DSRG----WF-SQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D RG WF +++ + + V V +H G +RG+H+ P QAK
Sbjct: 19 DHRGRSHEWFRGESFRQAFGHDFPVAQVNVAVSHR-----GALRGIHYTEIPPGQAKYSV 73
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
C+ G D+ VD+R SPT+G W + + A +Y+ G F++L + ++Y +
Sbjct: 74 CVRGAGLDVVVDVRIGSPTFGRWEIVPMDAERNTAVYLTAGLGRAFLSLTDDATLVYLCS 133
Query: 131 DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
Y+ + V D + I WP D I P +S++D+N P L
Sbjct: 134 SGYAPAREHSVNPLDPDLGIAWP--DDIEPLLSDRDENAPTL 173
>gi|119962499|ref|YP_947906.1| dTDP-4-keto-L-rhamnose
reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Arthrobacter aurescens TC1]
gi|119949358|gb|ABM08269.1| dTDP-4-keto-L-rhamnose
reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Arthrobacter aurescens TC1]
Length = 469
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 86/166 (51%), Gaps = 16/166 (9%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D RGWF + + ++++GL D VQ+N SF+ GTIRG H + P+ K V +G
Sbjct: 27 DERGWFKENWHRAKMRDIGLPDFGPVQNNISFNAARGTIRGFHAE--PWD--KFVSLASG 82
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
RIF VD+R PT+G E++A++ +++P G + F TLE +T Y V D +S
Sbjct: 83 RIFGAWVDLR-EGPTFGTSFCAELTAHDA--VFVPRGVGNAFQTLEDDTAYTYLVNDHWS 139
Query: 135 VEHDSGVAW---QDKSIDITW--PLLDTILPSVSEKDQNLPFLNQI 175
E + D+ + + W PL IL S +D+ P L +
Sbjct: 140 AEAQRDYTFLNLADEHVAVPWPIPLKSAIL---SPQDKKHPRLADV 182
>gi|126030141|pdb|1WA4|A Chain A, Crystal Structure Of The M131f L135a Evad Double Mutant
Length = 205
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 5/158 (3%)
Query: 12 RKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHFQRPPYAQAKLV 69
R F D RG Y + E +F Q HS S G +RG+H+ P AK V
Sbjct: 17 RVFADDRGLLILPYQEEAFVEAHGGPLFRVAQTIHSMS-KRGVVRGIHYTVTPPGTAKYV 75
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKV 129
C G+ DI +DIR SPT+G W S+ + + +Y+P G H F+ LE +T Y
Sbjct: 76 YCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDTVFSYMA 135
Query: 130 TDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+ Y + + ++ D ++ + P+ + P VS++D+
Sbjct: 136 SRSYVTQDELALSALDPALGL--PIDIGVEPIVSDRDR 171
>gi|266631449|emb|CBA11560.1| NDP-hexose-3,5-epimerase [Streptomyces lydicus]
Length = 218
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 82/176 (46%), Gaps = 6/176 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I +L K DSRG F + Y +L G Q N S S G +RG+H
Sbjct: 6 LSIEGGLLLSPDKITDSRGCFYEAYRPGELADHAGHPFTVAQTNFSVSAH-GVLRGIHGT 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK+V C G + D+ VD+R+ SPT+G S + A +G +Y+ G H F+ L
Sbjct: 65 LTPPGQAKIVTCHRGAVLDVIVDLRQGSPTFGRHQSQVLRAESGAAVYLAEGLGHAFLAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITW-PLLDTILPSVSEKDQNLPFLNQ 174
+T V Y + + + D + I W P D VSEKD+ P L +
Sbjct: 125 TDDTCVGYLCSTPFVPGTQIDLDPFDPDLAIDWGPAKDL---HVSEKDRRAPGLAE 177
>gi|331695741|ref|YP_004331980.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudonocardia dioxanivorans
CB1190]
gi|326950430|gb|AEA24127.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudonocardia dioxanivorans
CB1190]
Length = 180
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 6/167 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQR 60
+I+ V + F D RG F++T+ + + E G+ QD+ S S+ GT+RG+H +R
Sbjct: 7 DIDGVLLFVPTPFRDGRGLFTRTFDTAIAAEHGVDLGPRAQDSQSRSW-RGTVRGMHGRR 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AKLVR G + D+ VD R +SPT+G + + + +Y+P G HGF L
Sbjct: 66 G-RGEAKLVRAAHGAVHDVLVDARPSSPTFGVVAAFRLDDEDFHHLYVPPGLLHGFQALT 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+V Y++ + D GVA D + I WPL L +S++D+
Sbjct: 125 DVADVCYRIDRPHDPSEDVGVAHDDPDLAIAWPL---PLGPISDRDR 168
>gi|325067633|ref|ZP_08126306.1| dTDP-4-dehydrorhamnose reductase / dTDP-4-dehydrorhamnose
3,5-epimerase [Actinomyces oris K20]
Length = 193
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 94/172 (54%), Gaps = 15/172 (8%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + + LGL D VQ+N SF+ + G RG+H + P+ K V G
Sbjct: 30 DNRGWFKENWQREKMLALGLPDFGPVQNNISFNNEVGVTRGIHAE--PWD--KFVSVATG 85
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
R+F VD+R P++G + EI + + +++P G + + TLE +T Y V D +S
Sbjct: 86 RVFGAWVDLRE-GPSFGAVYTCEIDPS--VAVFVPRGVGNSYQTLEPDTAYTYLVNDHWS 142
Query: 135 VEHD-SGVAWQDKSIDITWP--LLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
+ + + D+++++ WP L + IL S+KD+ P L ++ +PF G
Sbjct: 143 ADAQYTFLNLADETVNVPWPIALSEAIL---SDKDKAHPRLAEV-TPFPAPG 190
>gi|227121334|gb|ACP19366.1| SaqZ1 [Micromonospora sp. Tu 6368]
Length = 199
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
++ +F D RG F +++ +E G+ V Q N+S S T+RG+H P QAK
Sbjct: 14 MEVNQFRDVRGSFFESFRVDAFEEATGVPFVPRQINYSVSRR-NTLRGIHSVALPPGQAK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
V C+ G + D AVD+R SPT+G + S + A +G +Y+P G HGF+ L+ ++ + Y
Sbjct: 73 FVSCVRGALRDFAVDLRVGSPTFGQYESNLLEAGSGRCVYLPEGVGHGFLALQDDSSICY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITW 152
++ + V D + I W
Sbjct: 133 VLSTTFVPGTQINVDPLDPELAIPW 157
>gi|220913157|ref|YP_002488466.1| dTDP-4-dehydrorhamnose reductase [Arthrobacter chlorophenolicus A6]
gi|219860035|gb|ACL40377.1| dTDP-4-dehydrorhamnose reductase [Arthrobacter chlorophenolicus A6]
Length = 474
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 14/165 (8%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + + LGL D VQ+N SF+ GT RG+H + P+ K + G
Sbjct: 29 DNRGWFKENWQREKMVALGLPDFRPVQNNISFNEKAGTTRGIHAE--PWD--KFISVATG 84
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
RIF VD+R P++G + E+ + I+IP G + F TLE NT Y V D +S
Sbjct: 85 RIFGAWVDLRE-GPSFGAVFTAELDPSQA--IFIPRGVGNAFQTLEDNTAYTYLVNDHWS 141
Query: 135 VEHDSGVAW---QDKSIDITWPL-LDTILPSVSEKDQNLPFLNQI 175
+ + D++ ++WP+ LD +S+KD+ P + +
Sbjct: 142 ADAQGQYTFLNLADETAAVSWPIPLDQA--ELSDKDKAHPRMADV 184
>gi|227497969|ref|ZP_03928149.1| dTDP-4-dehydrorhamnose reductase [Actinomyces urogenitalis DSM
15434]
gi|226832627|gb|EEH65010.1| dTDP-4-dehydrorhamnose reductase [Actinomyces urogenitalis DSM
15434]
Length = 490
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 92/168 (54%), Gaps = 15/168 (8%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + + LGL D VQ+N SF+ + G RG+H + P+ K V G
Sbjct: 43 DNRGWFKENWQREKMVALGLPDFGPVQNNISFNDEVGVTRGIHAE--PWD--KFVSVATG 98
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
R+F VD+R P++G + EI + + +++P G + + TLE NT Y V D +S
Sbjct: 99 RVFGAWVDLREG-PSFGTVYTTEIDPS--VAVFVPKGVGNAYQTLEPNTAYTYLVNDHWS 155
Query: 135 VEHD-SGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPF 179
E + + D++ ++ W PL + +L S+KD+ P L ++ +PF
Sbjct: 156 PEARYTFLNLADETANVPWPIPLEEAVL---SDKDKAHPRLAEV-TPF 199
>gi|40644856|emb|CAE17549.1| NDP-5-epimerase [Streptomyces griseus subsp. griseus]
Length = 209
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 74/164 (45%), Gaps = 4/164 (2%)
Query: 12 RKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
R D RG F + YS +L LG S S G +RG+HF P QA+ V
Sbjct: 15 RPHHDERGTFVEWYSDDELAAALGAPMPVALGAVSISRK-GVVRGVHFVETPPGQARYVT 73
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
C+AG + D VD+R SPT+G W S+ + + +++ G H F L V+Y +
Sbjct: 74 CVAGEVRDFVVDVREGSPTFGRWDSVRLGPDQWRAVHLAEGLGHAFTALTDRATVLYLCS 133
Query: 131 DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
Y + + D + + WP S+S +D+ P L +
Sbjct: 134 APYRPGRERTIHPLDPELALPWPAGAER--SLSIRDREAPTLAE 175
>gi|319950747|ref|ZP_08024641.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dietzia cinnamea P4]
gi|319435577|gb|EFV90803.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dietzia cinnamea P4]
Length = 219
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 6/169 (3%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+ R+ D RG F + ++ +E+ G + Q N S S + G +RGLH+ P QAK
Sbjct: 14 ITPRQISDDRGVFHEAFTDPAFREMTGHRFDLAQVNVSVSGE-GVLRGLHYAEVPPGQAK 72
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
V C +G +FD+ VD+R SPT+G W + + + +YIP G AHGF+ LE + V+Y
Sbjct: 73 YVLCPSGTVFDVVVDVRVGSPTFGEWAGVLLDSVEQRAVYIPEGVAHGFLALEPQSTVMY 132
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPFL 172
++ + + + D I I WP + I +S++D++ P L
Sbjct: 133 FCSEGWRPGAEHVIDAFDPKIAIDWPQMALDGTAIEHVMSDRDRDAPSL 181
>gi|300857650|ref|YP_003782633.1| dTDP-4-dehydrorhamnose reductase [Corynebacterium
pseudotuberculosis FRC41]
gi|300685104|gb|ADK28026.1| dTDP-4-dehydrorhamnose reductase [Corynebacterium
pseudotuberculosis FRC41]
gi|302329942|gb|ADL20136.1| Putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Corynebacterium
pseudotuberculosis 1002]
Length = 460
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 85/161 (52%), Gaps = 12/161 (7%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
EDSRGWF + + L LGL VQ+N SF+ + G RGLH + P+ K V
Sbjct: 20 EDSRGWFKENWQESKLVGLGLTGFRPVQNNISFNAEAGVTRGLHAE--PW--DKYVSVAT 75
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G +F D+R S T+G ++ I+ +++P G A+GF LE T Y V D +
Sbjct: 76 GSVFGAWCDLREGSATFGATFTITITPETA--VFVPRGVANGFQALEA-TAYTYLVNDHW 132
Query: 134 SVE-HDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFL 172
+ + H S V D +++I+WP+ LD ++S+KD P L
Sbjct: 133 APDAHYSFVNLADPALNISWPIPLDQA--TLSKKDTAHPPL 171
>gi|80279139|gb|ABB52524.1| NDP-hexose-3-epimerase [Streptomyces sp. KCTC 0041BP]
Length = 196
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 2/157 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG + + + ++ D V + G +RG+H+ P QAK C+ G
Sbjct: 19 DHRGRSHEWFRGERFRQTFGHDFPVAQVNVAVSHRGALRGIHYTEIPPGQAKYSVCVRGA 78
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
D+ VD+R SPT+G W + + A +Y+ G F++L + ++Y + Y+
Sbjct: 79 GLDVIVDVRIGSPTFGRWEIVPMDAERNTAVYLAAGLGRAFLSLTDDATLVYLCSSGYAP 138
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
E + V D + I WP I P +S++D+N P L
Sbjct: 139 EREHSVNPLDPDLGIVWPA--DIEPLLSDRDKNAPTL 173
>gi|329944296|ref|ZP_08292555.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Actinomyces sp. oral
taxon 170 str. F0386]
gi|328531026|gb|EGF57882.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Actinomyces sp. oral
taxon 170 str. F0386]
Length = 193
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 92/168 (54%), Gaps = 15/168 (8%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + + LGL D VQ+N SF+ + G RG+H + P+ K V G
Sbjct: 30 DNRGWFKENWQREKMLALGLPDFGPVQNNISFNNEVGVTRGIHAE--PWD--KFVSVATG 85
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
R+F VD+R P++G + EI + + +++P G + + TLE NT Y V D +S
Sbjct: 86 RVFGAWVDLRE-GPSFGTVYTCEIDPS--VAVFVPRGVGNAYQTLEPNTAYTYLVNDHWS 142
Query: 135 VEHD-SGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ + + D++ +++W PL + IL S+KD+ P L + +PF
Sbjct: 143 PDAQYTFLNLADETANVSWPIPLAEAIL---SDKDKAHPRLADV-APF 186
>gi|254385131|ref|ZP_05000464.1| NDP-hexose-3-epimerase [Streptomyces sp. Mg1]
gi|194344009|gb|EDX24975.1| NDP-hexose-3-epimerase [Streptomyces sp. Mg1]
Length = 196
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 2/157 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG + + + ++ D V + G +RG+H+ P QAK C+ G
Sbjct: 19 DHRGRSHEWFRGERFRQAFGHDFPVAQVNVAVSHRGALRGIHYTEIPPGQAKYSVCVRGA 78
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
D+ VD+R SPT+G W + + A +Y+ G F++L + ++Y + Y+
Sbjct: 79 GLDVIVDVRIGSPTFGRWEIVPMDAERNTAVYLTAGLGRAFLSLTDDATLVYLCSSGYAP 138
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
E + V D + I WP I P +S++D+N P L
Sbjct: 139 EREHSVNPLDPDLGIVWPA--DIEPLLSDRDKNAPTL 173
>gi|224223718|gb|ACN39733.1| SibJ [Streptosporangium sibiricum]
Length = 193
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 8/162 (4%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFD-CGTIRGLHFQRPPYAQAKLVRCI 72
F D RG F Y ++ L F + S + G RG+H+ K+V C+
Sbjct: 19 FPDERGMFCPIY-----QDGALSVPFPIRRSALSVNRAGAARGIHYAPGGDGPTKIVHCV 73
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
+G D VD+R SPT+G W ++ + A+ +Y+P G HGF+ L T V Y +T
Sbjct: 74 SGSAIDFVVDVRVGSPTFGHWDTILLDADLPRAVYLPAGLGHGFVALTGGTVVSYLMTTA 133
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
Y + V+ D ++ + P ++ +S D+ P L +
Sbjct: 134 YQAGDEQPVSLLDPALGLPLPAAQELV--MSPADRAAPTLAE 173
>gi|320531368|ref|ZP_08032338.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320136414|gb|EFW28392.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 193
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 15/172 (8%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + + LGL D VQ+N SF+ + G RG+H + P+ K V G
Sbjct: 30 DNRGWFKENWQREKMLALGLPDFGPVQNNISFNNEVGVTRGIHAE--PWD--KFVSVATG 85
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
R+F VD+R S ++G + EI + + +++P G + + TLE NT Y V D +S
Sbjct: 86 RVFGAWVDLREGS-SFGAVYTCEIDPS--VAVFVPRGVGNAYQTLEPNTAYTYLVNDHWS 142
Query: 135 VEHD-SGVAWQDKSIDITWP--LLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
+ + + D++ ++ WP L + IL S+KD+ P L + +PF G
Sbjct: 143 ADAQYTFLNLADETANVPWPIALSEAIL---SDKDKAHPRLADV-TPFPAPG 190
>gi|315606109|ref|ZP_07881140.1| dTDP-4-keto-L-rhamnose
reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Actinomyces sp. oral taxon 180 str. F0310]
gi|315312391|gb|EFU60477.1| dTDP-4-keto-L-rhamnose
reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Actinomyces sp. oral taxon 180 str. F0310]
Length = 475
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 91/167 (54%), Gaps = 13/167 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + + LGL D VQ+N SF+ G RG+H + P+ K V G
Sbjct: 28 DNRGWFKENWQREKMVALGLPDFHPVQNNISFNDQIGVTRGIHAE--PWD--KFVSVATG 83
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
R+F VD+R P++G + I + G+ +++P G + + TLE NT Y V D +S
Sbjct: 84 RVFGAWVDLREG-PSFGTVYTTII--DPGVAVFVPRGVGNAYQTLEPNTAYTYLVNDHWS 140
Query: 135 VEHD-SGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPF 179
+ + + D+++ I WP+ L+ + +SEKD+ P L + +PF
Sbjct: 141 PDAQYTFLNLADETVAIDWPIPLERAI--LSEKDKGHPRLGDV-APF 184
>gi|172039920|ref|YP_001799634.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium urealyticum
DSM 7109]
gi|171851224|emb|CAQ04200.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium urealyticum
DSM 7109]
Length = 234
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 3/171 (1%)
Query: 8 ILKTRKFEDSRGWFSQTY-SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+ R F D+RG F + + +++ + LG Q N S S +RG+H P QA
Sbjct: 31 LFAPRVFGDARGSFHEGFHAAQFTEHLGYPFDVAQANVSRS-SRDVVRGIHLAEVPPGQA 89
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
K V C+AG + D+ VD+R SPT+G V + +S +N +++P G HGF+ +
Sbjct: 90 KFVSCLAGEVVDVLVDLRVGSPTFGKHVKVALSESNNYAVHVPIGVGHGFVARSETAVLN 149
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
Y VT+ Y+ + + GV D + I W +D +S+KD P L ++ +
Sbjct: 150 YLVTEAYNPDREFGVDPFDPELGIDWG-VDRADAVLSDKDAAAPALAEVHA 199
>gi|302205388|gb|ADL09730.1| Putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Corynebacterium
pseudotuberculosis C231]
gi|308275626|gb|ADO25525.1| Putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Corynebacterium
pseudotuberculosis I19]
Length = 460
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 84/161 (52%), Gaps = 12/161 (7%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
EDSRGWF + + L LG VQ+N SF+ + G RGLH + P+ K V
Sbjct: 20 EDSRGWFKENWQESKLVGLGFTGFRPVQNNISFNAEAGVTRGLHAE--PW--DKYVSVAT 75
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G +F D+R S T+G ++ I+ +++P G A+GF LE T Y V D +
Sbjct: 76 GSVFGAWCDLREGSATFGATFTITITPETA--VFVPRGVANGFQALEA-TAYTYLVNDHW 132
Query: 134 SVE-HDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFL 172
+ + H S V D +++I+WP+ LD ++S+KD P L
Sbjct: 133 APDAHYSFVNLADPALNISWPIPLDQA--TLSKKDTAHPPL 171
>gi|88319784|emb|CAF31362.1| putative NDP-hexose 3, 5-epimerase [Streptomyces sp. SCC 2136]
Length = 196
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 4/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
M I ++ R+ D RG F + L K G+ Q N+S S T+RG+H
Sbjct: 1 MVIPGTYLVTPRQIHDERGNFYEAMRDDTLEKATGVAFQPRQINYSVSRR-HTLRGIHSV 59
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G + DI VD+R SP + E+ A++G +Y+P G HGF+ L
Sbjct: 60 SIPPGQAKYVTCVRGVLRDIVVDLRIGSPAFMKHQVNELDADSGRSVYVPEGVGHGFLAL 119
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ + Y V+ Y + D +D+ W + +P +S+KD P + +
Sbjct: 120 TDDACICYVVSSTYVPGTQIDINPLDPELDLPWDCPE--VPLISDKDAKAPTVAE 172
>gi|116671224|ref|YP_832157.1| dTDP-4-dehydrorhamnose reductase [Arthrobacter sp. FB24]
gi|116611333|gb|ABK04057.1| dTDP-4-dehydrorhamnose reductase [Arthrobacter sp. FB24]
Length = 474
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 14/165 (8%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + + LGL D VQ+N SF+ GT RG+H + P+ K + G
Sbjct: 29 DNRGWFKENWQREKMVALGLPDFRPVQNNISFNEKAGTTRGIHAE--PWD--KFISVATG 84
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+IF VD+R P++G + E+ + I+IP G + F TLE NT Y V D +S
Sbjct: 85 KIFGAWVDLREG-PSFGAVFTAELDPSQA--IFIPRGVGNAFQTLEDNTAYTYLVNDHWS 141
Query: 135 VEHDSGVAW---QDKSIDITWPL-LDTILPSVSEKDQNLPFLNQI 175
+ + D++ I+WP+ L+ +S+KD+ P L +
Sbjct: 142 ADAQGQYTFLNLADETAAISWPVPLEEA--ELSDKDKAHPRLADV 184
>gi|184201350|ref|YP_001855557.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Kocuria rhizophila
DC2201]
gi|183581580|dbj|BAG30051.1| putative dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase [Kocuria
rhizophila DC2201]
Length = 326
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF+ + GL D FVQ+N SF+ T RG+H + P+ K V G
Sbjct: 19 DNRGWFTDNWQRAKAVAAGLPDASFVQNNISFNGSRRTTRGIHAE--PWD--KYVSVATG 74
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
RIF VD+R P +G V+ EI+ G +++P G + F TLE T Y VTD +
Sbjct: 75 RIFGACVDLR-EGPGFGTVVTHEITP--GTAVFVPRGVGNAFQTLEEATAYTYLVTDHWR 131
Query: 135 VEHD---SGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ S V D + I WP + +++KD+ P L+ ++
Sbjct: 132 ADATAEYSFVNLGDPQLGIEWP-VPLAQAELADKDRAHPALDDVE 175
>gi|227505632|ref|ZP_03935681.1| dTDP-4-keto-6-deoxyglucose-3, 5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
striatum ATCC 6940]
gi|227197785|gb|EEI77833.1| dTDP-4-keto-6-deoxyglucose-3, 5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
striatum ATCC 6940]
Length = 447
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRP 61
I + IL+ D+RGWF + + + + GL D VQ+N SF+ G RGLH +
Sbjct: 8 IEGLLILELDVHSDNRGWFKENWQRAKMLDAGLPDFQPVQNNVSFNAARGVTRGLHAE-- 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ KLV G++F D+R SPTYG V+ EI +++P G A+GF LE
Sbjct: 66 PWD--KLVSIAHGKVFGAWCDVREGSPTYGELVTHEIGPETA--VFVPWGVANGFQALE- 120
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T Y V D +S + + D + WPL T +S+KD+ P L +
Sbjct: 121 ETAYSYLVNDHWSPDAEYTFVNLDM---VDWPLEPT---EISDKDRAHPRLADV 168
>gi|182434422|ref|YP_001822141.1| putative epimerase [Streptomyces griseus subsp. griseus NBRC 13350]
gi|178462938|dbj|BAG17458.1| putative epimerase [Streptomyces griseus subsp. griseus NBRC 13350]
Length = 204
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 3/162 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFD-CGTIRGLHFQRPPYAQAKLVRCI 72
F D RG F +Y + +F SFS G +RG+H+ P K V C
Sbjct: 19 FPDDRGDFLSSYQESDFRTATGTSLFPVAQASFSRSRSGVMRGVHYTATPPGCEKYVTCP 78
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
G D+ VD+R SPT+G W S+ + +Y+P G H F+ LE +T + Y ++
Sbjct: 79 RGSALDVVVDLRVGSPTFGTWDSVVLDQETHRAVYLPQGVGHLFLALEDDTVMSYLLSRE 138
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
Y ++ ++ D + + P ++ +S +D+ P L +
Sbjct: 139 YVPGNERAISPFDPRLALPVPGPSDVM--ISRRDREAPLLAE 178
>gi|47716693|gb|AAT37542.1| putative NDP-hexose-3,5-epimerase [Streptomyces globisporus]
Length = 190
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 4/159 (2%)
Query: 15 EDSRG-WFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
+D RG +F + +L + +G Q N+S S T+RG+H P QAK V C+
Sbjct: 21 KDERGAFFESLRTDELERVVGHPFEVRQINYSVSRR-NTLRGIHSVTSPPGQAKYVSCVR 79
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G D VD+R SPT+G + S + A +G +Y+P G HGF+TL + + Y ++ Y
Sbjct: 80 GAFRDFVVDLRVGSPTFGQYDSNVLDAESGRAVYVPEGVGHGFLTLTDDACICYVLSSTY 139
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ D + + W + P +S+KD++ P L
Sbjct: 140 VPGTQIDIDPLDPDLALPWGFTEP--PLMSDKDRDAPSL 176
>gi|326332007|ref|ZP_08198292.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Nocardioidaceae bacterium Broad-1]
gi|325950145|gb|EGD42200.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Nocardioidaceae bacterium Broad-1]
Length = 460
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 12/163 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + ELGL D VQ+N SF+ G RG+H + P+ K V G
Sbjct: 24 DARGWFKENWQRSKMVELGLPDFGPVQNNMSFNASRGATRGIHTE--PW--DKFVSVACG 79
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
R+F VD+R S ++G S+EI +++P G + + LE T Y V D +
Sbjct: 80 RVFAAWVDMREGS-SFGTTFSVEIGPETA--VFVPRGVGNSYQALEDRTVYSYLVNDHWR 136
Query: 135 VEHD-SGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQI 175
H + D++ I WP+ LD+ +SEKD+ P L +I
Sbjct: 137 PGHAYPALHLGDETAAIPWPIPLDSA--EISEKDRANPRLAEI 177
>gi|308445205|gb|ADO32779.1| dTDP-2,3,6-D-glycero-4-hexulose 5-epimerase [Streptomyces
vietnamensis]
Length = 203
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 8/169 (4%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
++ ++ D RG F ++ + L+ E +G Q N+S S T+RG+H P QA
Sbjct: 14 VITPHQWPDPRGTFFESLRTDLVGEAVGRPFEVRQINYSTSRR-NTLRGIHGVLIPPGQA 72
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
K V C+ G + D+ VD+R SPT+G S ++ NG+ +++ G HGF+ L +T +
Sbjct: 73 KYVTCVRGALRDMVVDLRVGSPTFGQSASTLLTPENGMAVHVTEGLGHGFLALTDDTCIS 132
Query: 127 YKVTDFYSVEHDSGVAWQDKSID--ITWPLLDTILPSVSEKDQNLPFLN 173
Y + S H G ++ +D + P P +SEKD P L
Sbjct: 133 YAL----STAHVPGTQFEIDPLDPELALPWGHEEPPLLSEKDARAPSLR 177
>gi|326774961|ref|ZP_08234226.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces cf. griseus
XylebKG-1]
gi|326655294|gb|EGE40140.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces cf. griseus
XylebKG-1]
Length = 204
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 3/162 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFD-CGTIRGLHFQRPPYAQAKLVRCI 72
F D RG F +Y + +F SFS G +RG+H+ P K V C
Sbjct: 19 FPDDRGDFLSSYQESDFRTAMGTSLFPVAQASFSRSRSGVMRGVHYTATPPGCEKYVTCP 78
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
G D+ VD+R SPT+G W S+ + +Y+P G H F+ LE +T + Y ++
Sbjct: 79 RGSALDVVVDLRVGSPTFGTWDSVVLDQETHRAVYLPQGVGHLFLALEDDTVMSYLLSRE 138
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
Y ++ ++ D + + P ++ +S +D+ P L +
Sbjct: 139 YVPGNERAISPFDPRLALPVPGPSDVM--ISRRDREAPLLAE 178
>gi|4218557|emb|CAA09646.1| putative dTDP-4-keto-6-deoxyglucose-2,3-dehydratase [Streptomyces
violaceoruber]
Length = 195
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 12/171 (7%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
++ R++ D RG F ++ + L+ E +G Q N+S S T+RG+H P QA
Sbjct: 14 VITPRQWPDPRGTFFESLRTDLVSEAVGRPFEVRQINYSTSRR-NTLRGVHGVLIPPGQA 72
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
K V C+ G + D+ VD+R SPT+G S ++ NG+ +++ G HGF+ L +T +
Sbjct: 73 KYVTCVRGALRDMVVDLRVGSPTFGQSASTLLTPENGVAVHVAEGLGHGFLALTDDTCIS 132
Query: 127 YKVTDFYSVEHDSGVAWQ----DKSIDITWPLLDTILPSVSEKDQNLPFLN 173
Y + S H G ++ D + + W + P +S KD P L
Sbjct: 133 YAL----STAHVPGTQFEIDPLDPDLALPWGFDEP--PLLSAKDAGAPSLR 177
>gi|311896581|dbj|BAJ28989.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Kitasatospora setae
KM-6054]
Length = 199
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 5/160 (3%)
Query: 16 DSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D RG F + Y KL + +G Q N S S +RG+HF P QAK V C+ G
Sbjct: 21 DPRGLFMEWYRFDKLSEVVGHPLRLAQGNLSVSAK-NVVRGVHFADVPPGQAKYVSCVRG 79
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+ D+ VD+R SP +G W + + + +Y+P G HGF L + + Y ++ Y+
Sbjct: 80 AVLDVVVDLRVGSPAFGRWEFVRLDETDRRSVYLPEGLGHGFCALTDDATLSYVCSETYN 139
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ GV D + I WP+ +P +S KD+ P L +
Sbjct: 140 PTGEHGVHPLDPDLGIEWPVE---VPQLSAKDEQAPTLAE 176
>gi|23015347|ref|ZP_00055126.1| COG1898: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Magnetospirillum magnetotacticum MS-1]
Length = 171
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 72/156 (46%), Gaps = 7/156 (4%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
FED RG + +TY+ +L G+ FVQD+ S S +RG+H + KLV C+
Sbjct: 22 FEDFRGHYIETYNRELYNAAGITVDFVQDDISVS-QHNVLRGIHGDGGTW---KLVSCLH 77
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
GR + V+ +SP Y W +S N Q+ IP F +G + L YK Y
Sbjct: 78 GRFYLAVVNNDPDSPQYRKWTGFTLSDTNRHQVLIPPKFGNGHLVLSDWAIFHYKQNSQY 137
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
+ W D + I WP D IL S +DQ L
Sbjct: 138 DRSSQFTILWNDPAYGIWWPRTDPIL---SRRDQGL 170
>gi|330468514|ref|YP_004406257.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Verrucosispora maris
AB-18-032]
gi|328811485|gb|AEB45657.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Verrucosispora maris
AB-18-032]
Length = 204
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 5/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + ++ DSRG F + Y +L +E+G Q N S S +RG+HF
Sbjct: 6 LGIEGAWEITPQQHGDSRGLFLEWYRFDRLAEEVGHPLRLAQGNLSVSAR-HVVRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G + D+ VD+R SPT+G W S+ + + +Y+ G HGF L
Sbjct: 65 DVPPGQAKYVTCVRGAVLDVVVDLRVGSPTFGEWESVRLDDVDRRAVYLAEGLGHGFCAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + Y + Y+ + V D+ + I WP T P +S +D P L Q+
Sbjct: 125 TDDATLSYLCSTTYNPTAEHAVHPLDEELGIEWP---TGTPLLSARDAAAPNLAQV 177
>gi|291617820|ref|YP_003520562.1| RfbC [Pantoea ananatis LMG 20103]
gi|291152850|gb|ADD77434.1| RfbC [Pantoea ananatis LMG 20103]
Length = 127
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 63/102 (61%), Gaps = 3/102 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ + D RG+F +T+ + +EL + FVQDN+S S +RGLHFQ+
Sbjct: 7 KIADVKIIQPAVYGDDRGFFLETFEKRRYQELLETHLEFVQDNYSRS-GRHVLRGLHFQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANN 102
Q KLVR + G +FD+AVDIR SPT+G W S+ +S N
Sbjct: 66 TE-PQGKLVRVVRGEVFDVAVDIRPGSPTFGQWESILLSEEN 106
>gi|119961083|ref|YP_948860.1| dTDP-4-keto-L-rhamnose
reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Arthrobacter aurescens TC1]
gi|119947942|gb|ABM06853.1| dTDP-4-keto-L-rhamnose
reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Arthrobacter aurescens TC1]
Length = 477
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 12/164 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + + L L D VQ+N SF+ GT RG+H + P+ K + +G
Sbjct: 29 DNRGWFKENWQREKMLALALPDFKPVQNNVSFNEKVGTTRGIHAE--PWD--KFISVASG 84
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+IF VD+R+ PT+G + + + I+IP G + F TLE NT Y V D +S
Sbjct: 85 KIFGAWVDLRQG-PTFGNVFTATMDPSQA--IFIPRGVGNAFQTLEDNTAYTYLVNDHWS 141
Query: 135 VEHDSGVAW---QDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ ++ D++ I WP+ + +S+KD+ P L+++
Sbjct: 142 ADAQGQYSFLNLADETAAIDWPIPLSA-AELSDKDKAHPRLSEV 184
>gi|159037628|ref|YP_001536881.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salinispora arenicola
CNS-205]
gi|157916463|gb|ABV97890.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salinispora arenicola
CNS-205]
Length = 187
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 2/140 (1%)
Query: 15 EDSRGWF-SQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
+D RG F S + ++ +G + Q NHS S G +RG+HF P QAK V C
Sbjct: 20 DDHRGVFVSPMQQTPFVEAVGHRFEVAQTNHSRSAR-GVLRGVHFTATPPGQAKYVHCPH 78
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
GR+ D+ VD+R SP +G W ++E+ + +Y+P G H F+ LE ++ V Y + Y
Sbjct: 79 GRVLDVVVDLRVGSPAFGTWDAVELDPISFRAVYLPVGVGHTFLALEDDSIVSYLASTEY 138
Query: 134 SVEHDSGVAWQDKSIDITWP 153
+ E + GV D + + WP
Sbjct: 139 AAERELGVNPLDPQLALPWP 158
>gi|298490026|ref|YP_003720203.1| dTDP-4-dehydrorhamnose 3,5-epimerase ['Nostoc azollae' 0708]
gi|298231944|gb|ADI63080.1| dTDP-4-dehydrorhamnose 3,5-epimerase ['Nostoc azollae' 0708]
Length = 110
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 70/107 (65%), Gaps = 7/107 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKL-LKELGLQDVFVQDNHSFSFDCGTIRGLHFQ-- 59
I+ V +++ + D RG+F ++Y+ ++ L+++G+ FVQDNHS S +RGLH+Q
Sbjct: 8 ISDVLLIEPQILGDKRGFFYESYNERVFLEKVGILSHFVQDNHSRSIK-DVLRGLHYQIE 66
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQI 106
+P Q KLVR + G +FD+AVD+R+ S T+G V + +SA N Q+
Sbjct: 67 KP---QGKLVRVVVGSVFDVAVDLRKISATFGQSVGVCLSAENKDQL 110
>gi|282851769|ref|ZP_06261132.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus
gasseri 224-1]
gi|282557011|gb|EFB62610.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus
gasseri 224-1]
Length = 83
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 23 QTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVD 82
+T++ + + + G FVQDN S S G +RGLHFQ+ Y Q KLVR + G +FD+AVD
Sbjct: 2 ETFNQRDMMDAGFSINFVQDNQSSS-TKGVLRGLHFQKK-YPQIKLVRAVRGSVFDVAVD 59
Query: 83 IRRNSPTYGCWVSLEISANN 102
+R S TYG W +E++A N
Sbjct: 60 LRSESKTYGKWYGVELTAEN 79
>gi|170785369|gb|ACB37728.1| bifunctional NDP-hexose 3,5- (or 5-) epimerase/putative
dTDP-4-keto-6-deoxyglucose-2,3-dehydratase
[Micromonospora chalcea]
Length = 200
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 4/155 (2%)
Query: 13 KFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
+ D RG F + + S+LL+++G + Q N+S S T+RG+H P Q+KLV C
Sbjct: 21 QHSDRRGSFFEAWRFSELLQQVGQRFEIRQVNYSVSRK-NTLRGIHGTTLPPGQSKLVTC 79
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
+ G D+AVD+R SPT+G + A +G+ +Y+ G H F+ L +T + Y
Sbjct: 80 VRGAAMDVAVDLRVGSPTFGKFDVTFQDATSGIGVYLTEGIGHAFLALTDDTCMSYLCGA 139
Query: 132 FYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
Y VA D ++ I W L P +S+KD
Sbjct: 140 EYVPGTMIDVAALDPALGIPWKLDGP--PVMSDKD 172
>gi|297250186|ref|ZP_06933881.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella abortus bv. 5 str.
B3196]
gi|297172981|gb|EFH32351.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella abortus bv. 5 str.
B3196]
Length = 148
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NIN ++ + +D RGWF++ Y E L+ F Q + SFS + GT+RGLH+Q
Sbjct: 65 LNINGAWSIEPERLKDERGWFARVYCEAAFAERKLETHFPQHSLSFSREKGTLRGLHYQN 124
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIR 84
P+++ KLV C+ G ++D+ VD+R
Sbjct: 125 EPHSETKLVTCLQGIVWDVLVDLR 148
>gi|296394659|ref|YP_003659543.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Segniliparus rotundus DSM
44985]
gi|296181806|gb|ADG98712.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Segniliparus rotundus DSM
44985]
Length = 199
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 11/169 (6%)
Query: 16 DSRGWFSQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQRPP-----YAQAKLV 69
D RG ++ + + L+E +D Q N S S G +RG+H P Q K V
Sbjct: 22 DDRGVNAELFRASALREATGRDFTTAQCNCSIS-KAGVLRGVHLALSPDGALEGGQEKYV 80
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKV 129
+G FD+ VD+R SPT+G W ++ +S + + G H + LE +T + Y
Sbjct: 81 TATSGMAFDVVVDVRSGSPTFGAWEAVLLSGERRNAVLLSAGLGHAVLALEDDTVLTYLC 140
Query: 130 TDFYSVEHDSGVAWQDKSIDITWPLLDTILPSV----SEKDQNLPFLNQ 174
+ Y + + D ++ I WP D+ ++ S++D+ P L Q
Sbjct: 141 SQEYDPGRERALDALDPALAIAWPRTDSRGRTIDFLRSDRDRAAPSLAQ 189
>gi|28394167|dbj|BAC57040.1| dTDP-4-keto, 6-deoxyglucose-3-epimerase [Micromonospora
griseorubida]
Length = 233
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 85/176 (48%), Gaps = 5/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I+ + R+ D RG F + Y LL +G F Q N S S G IRG+HF
Sbjct: 6 LSIDGAWEVTPRQHGDPRGVFLEWYRFDLLAHGVGHPLRFGQANLSVSAR-GVIRGIHFT 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G + D+ VD+R SPT+G W ++ + +Y+ G HGF L
Sbjct: 65 DVPPGQAKYVTCVRGAVLDVVVDVRVGSPTFGRWEAVRLDDTERRAVYLAEGLGHGFCAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ V Y + + + + + D + I WP +L S +D+N P L Q+
Sbjct: 125 TDDATVTYLCSTTHDPQAERQLHPLDPMLGIEWPDGPRLL---SARDENAPDLGQL 177
>gi|152777|gb|AAA16933.1| dTDP-6-deoxy-L-lyxo-4 hexulose 4-reductase [Shigella dysenteriae]
Length = 107
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 75 RIFDIAVDIRRN-SPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
++F+ + I N PT+G W+ + +SA Q++IP GFAHGF+ L E +YK T++Y
Sbjct: 1 KVFEFSSLIFVNRHPTFGKWIGVNLSAEIKRQLWIPEGFAHGFLVLSETAEFVYKTTNYY 60
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+ + +++ D +I I WP L + +S KD N
Sbjct: 61 NPSFEKSISYSDPTIKIQWPNLQDMHVKLSNKDLN 95
>gi|293189321|ref|ZP_06608044.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Actinomyces
odontolyticus F0309]
gi|292821784|gb|EFF80720.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Actinomyces
odontolyticus F0309]
Length = 475
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 91/167 (54%), Gaps = 13/167 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + + LGL D VQ+N SF+ + G RG+H + P+ K V G
Sbjct: 28 DNRGWFKENWQREKMVALGLPDFQPVQNNISFNDEVGVTRGIHAE--PWD--KFVSVATG 83
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
R+F VD+R P++G + I + G+ +++P G + + TLE NT Y V D +S
Sbjct: 84 RVFGAWVDLREG-PSFGTVYTTII--DPGVAVFVPKGVGNSYQTLEPNTAYTYLVNDHWS 140
Query: 135 VEHD-SGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPF 179
+ + + D++ + WP+ L+ + +S+KD+ P + + +PF
Sbjct: 141 PDARYTFLNLADETAAVDWPIPLERAI--LSDKDKAHPRMADV-TPF 184
>gi|227549713|ref|ZP_03979762.1| dTDP-4-keto-6-deoxyglucose-3, 5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
lipophiloflavum DSM 44291]
gi|227078209|gb|EEI16172.1| dTDP-4-keto-6-deoxyglucose-3, 5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
lipophiloflavum DSM 44291]
Length = 440
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 85/181 (46%), Gaps = 24/181 (13%)
Query: 1 MNINPVRILKTRKFE---DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLH 57
MN P+ L+ + D+RGWF + +S + L+ VQ+N SF+ G RG+H
Sbjct: 1 MNPTPIDGLEIHPLDVHADNRGWFKENWSGQRLRP-------VQNNISFNARVGATRGMH 53
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
+ P+ K V GR+F VD+R S T+ +EI + +++P G A+GF
Sbjct: 54 AE--PWD--KWVSVATGRVFAAWVDLREGSETFATKFGVEIGPDTA--VFVPRGVANGFQ 107
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
LE T Y V Y + +G +I WPL T L SE DQ P L D+
Sbjct: 108 ALEDATTYTYLVNARY---NPNGAYAYCSYREIDWPLEPTEL---SEADQKHPPL--ADA 159
Query: 178 P 178
P
Sbjct: 160 P 160
>gi|154507643|ref|ZP_02043285.1| hypothetical protein ACTODO_00124 [Actinomyces odontolyticus ATCC
17982]
gi|153797277|gb|EDN79697.1| hypothetical protein ACTODO_00124 [Actinomyces odontolyticus ATCC
17982]
Length = 475
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 91/167 (54%), Gaps = 13/167 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + + LGL D VQ+N SF+ + G RG+H + P+ K V G
Sbjct: 28 DNRGWFKENWQREKMVALGLPDFQPVQNNISFNDEVGVTRGIHAE--PWD--KFVSVATG 83
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
R+F VD+R P++G + I + G+ +++P G + + TLE NT Y V D +S
Sbjct: 84 RVFGAWVDLREG-PSFGTVYTTII--DPGVAVFVPKGVGNSYQTLEPNTAYTYLVNDHWS 140
Query: 135 VEHD-SGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPF 179
+ + + D++ + WP+ L+ + +S+KD+ P + + +PF
Sbjct: 141 PDARYTFLNLADETAAVDWPIPLERAI--LSDKDKAHPRMADV-TPF 184
>gi|4240427|gb|AAD13558.1| NDP-hexose 3,5-epimerase homolog [Streptomyces cyanogenus]
Length = 192
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 4/155 (2%)
Query: 15 EDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
+D RG F ++ + LL+++ G Q N+S S +RG+H P QAK V C+
Sbjct: 21 KDERGAFFESLRTDLLQDVVGHPFEVKQINYSVSRR-NHLRGIHSVTSPPGQAKYVSCVR 79
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G D VD+R SPT+G + + A +G +YIP G HGF+TL + + Y ++ Y
Sbjct: 80 GAFRDFVVDLRVGSPTFGQYDVNLLDAASGRALYIPEGVGHGFLTLTEDACICYVLSSTY 139
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+ D + + W + P +SEKD+
Sbjct: 140 VPGTQIDIDPLDPDLALPWGFTEP--PLISEKDRT 172
>gi|171466624|gb|ACB46499.1| sugar 5-epimerase [Actinomadura kijaniata]
Length = 202
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 4/167 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
M++ ++ + D RG F +++ S+LL++ G Q N+S S T+RG+H
Sbjct: 9 MSVAGAFRIRPTQIPDRRGRFYESWRFSELLQQAGHPFEIRQVNYSVSRK-NTLRGIHGT 67
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P Q KLV C+ G D+AVD+R SPT+G + A +G+ +Y+ G H F+ L
Sbjct: 68 TIPPGQTKLVTCVRGAALDVAVDLRVGSPTFGRFDVTLQEAGSGIGVYLADGIGHAFLAL 127
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+T + Y Y V D ++ I W L P +S+KD
Sbjct: 128 TDDTCMNYLCGAEYVPGTMIDVQALDPALGIPWELDGP--PIMSDKD 172
>gi|38232977|ref|NP_938744.1| putative bifunctional protein [Corynebacterium diphtheriae NCTC
13129]
gi|38199235|emb|CAE48866.1| Putative bifunctional protein [Corynebacterium diphtheriae]
Length = 448
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 15/161 (9%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + + GL D VQ+N SF+ + G RGLH + P+ K V G
Sbjct: 21 DNRGWFKENWQREKMVAAGLPDFQPVQNNISFNAERGVTRGLHAE--PWD--KFVSVAHG 76
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+F D+R S T+G V+ I+ + +++P G A+GF L NT Y V D +S
Sbjct: 77 EVFGAWCDLREGSDTFGEVVTCTITPHTA--VFVPRGVANGFQALVDNTSYTYLVNDHWS 134
Query: 135 VEHDSGVAWQDKSID-ITWPLLDTILPSVSEKDQNLPFLNQ 174
+ + ++D I WPL T +SEKD+ P L +
Sbjct: 135 PD----ATYTAVNLDMIDWPLPPT---EISEKDRCHPQLAE 168
>gi|11095239|gb|AAG29805.1| dTDP-4-keto-6-deoxyglucose 3,5-epimerase [Streptomyces
rishiriensis]
Length = 198
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 10/180 (5%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIR 54
M + P+ I + ++ D RG F Y + E+G Q N S S
Sbjct: 1 MKLRPLGIEGAWEITPKQHADPRGVFLDWYRVDQFAAEVGRPLRLAQANLSVSVRGVVRG 60
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
+HF P QAK V C+ G +FD+ VD+R SPTYG W + + +Y+ G H
Sbjct: 61 -VHFADVPPGQAKYVTCVRGALFDVVVDLRVGSPTYGRWEGTRLDDVSRRAVYLSEGIGH 119
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
GF + + Y + Y+ + GV D + I WP+ P +S +DQ+ L +
Sbjct: 120 GFCAISDEATLCYLSSQTYNPASEHGVHPLDPELAINWPVE---TPLLSARDQDALLLAE 176
>gi|256825665|ref|YP_003149625.1| dTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme [Kytococcus
sedentarius DSM 20547]
gi|256689058|gb|ACV06860.1| dTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme [Kytococcus
sedentarius DSM 20547]
Length = 166
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPT 110
G +RG H P KL+ C AG ++D+ +D+R++SPT+ + + ++ + P
Sbjct: 29 GALRGFHVAEHP-GHTKLITCAAGAVWDVLIDLRQDSPTFRGVAEVHVEGSDPTAVLCPA 87
Query: 111 GFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
G AHGF++L + V+ V D ++ + G D ++ + WPL D + P
Sbjct: 88 GVAHGFLSLTEGSVVLIGVDDNFAGVTEHGFDALDPALGVRWPLPDDDFIRSARDASAPP 147
Query: 171 FLNQIDSPFEY 181
+ + S F +
Sbjct: 148 LADLLGSGFRF 158
>gi|311742181|ref|ZP_07715991.1| dTDP-4-dehydrorhamnose reductase [Aeromicrobium marinum DSM 15272]
gi|311314674|gb|EFQ84581.1| dTDP-4-dehydrorhamnose reductase [Aeromicrobium marinum DSM 15272]
Length = 468
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 91/168 (54%), Gaps = 13/168 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + ++ LGL + +Q N SF+ GT RG+H + P+ K + G
Sbjct: 28 DNRGWFKENWHLRKMRSLGLTEFGPIQSNVSFNHAVGTTRGIHAE--PW--DKFISVATG 83
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
R+F VD+R ++G + E+ + +++P G + + +LE +T IY V D +S
Sbjct: 84 RVFAAWVDLREGD-SFGQVFTTELDPSTA--VFVPRGVGNSYQSLEQDTAYIYLVNDHWS 140
Query: 135 VEHD-SGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPFE 180
+ + + D+++ I WP+ LD +S++D+ P L ++ PF+
Sbjct: 141 PDASYTFLNLADETVAIDWPIPLDQA--ELSDRDRTHPRLADVE-PFK 185
>gi|139439925|ref|ZP_01773277.1| Hypothetical protein COLAER_02315 [Collinsella aerofaciens ATCC
25986]
gi|133774775|gb|EBA38595.1| Hypothetical protein COLAER_02315 [Collinsella aerofaciens ATCC
25986]
Length = 484
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 13/179 (7%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
I ++++ DSRGWF + + + LG+ D+ VQ+N S++ G RG+H +
Sbjct: 16 GIVGLKVVDLAVHGDSRGWFKENWQRAKMTALGIPDLRVVQNNVSYNDSRGVTRGIHAE- 74
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + G +F VD+R S T+G + + + IY+P G + F LE
Sbjct: 75 -PW--DKFISVARGSVFGAWVDLREGSETFGKVFTTVLDPSKA--IYVPRGVGNSFQALE 129
Query: 121 MNTEVIYKVTDFYSVEHD---SGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQI 175
T Y V +S+E + V D ++I WP+ LD +VSE D N P L +
Sbjct: 130 DGTAYTYLVDAHWSLELKRTYTFVNLADPELNIQWPIPLDQA--TVSEADLNHPMLRDV 186
>gi|161367407|gb|ABX71133.1| Lct50 [Streptomyces rishiriensis]
Length = 161
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Query: 16 DSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D RG F ++ LL++ LG +Q N S S T+RG+H P QAK V C+ G
Sbjct: 21 DPRGDFFESLRVDLLEDVLGHAFRPLQVNCSTSRR-NTLRGIHSVTSPPGQAKYVTCVRG 79
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
+ DI VD+R SP +G + A +G +Y+P G HGF+TL ++ V Y + Y
Sbjct: 80 SVRDIVVDLRPGSPAFGSHAVNVLDAASGRAVYVPEGVGHGFLTLADDSCVCYVLDSVY 138
>gi|256856006|emb|CBB12351.1| RmlC protein [Rhodococcus aetherivorans]
Length = 195
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 14/173 (8%)
Query: 9 LKTRKFEDSRG----WFSQ-TYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPY 63
+ R+F D RG WF Q T++ + L L Q N S S G +RG+H+ P
Sbjct: 14 ITPRQFGDDRGVFYEWFKQPTFTDAAGRALDL----AQANCSVSA-AGVLRGIHYADVPP 68
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
QAK V C AG + D+ VD+R SPT+G W ++ + + I++P G H F +L +
Sbjct: 69 GQAKYVTCPAGAVLDVVVDLRVGSPTFGQWDAVLLDDVDRRAIFLPEGLGHAFCSLADGS 128
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFL 172
V+Y + Y+ + + + D I I WP + +S+KD+ P L
Sbjct: 129 TVVYLCSTGYNPDREHEIDPLDPQIGIDWPTTGRDGAPLHHQLSDKDRAAPSL 181
>gi|210633568|ref|ZP_03297812.1| hypothetical protein COLSTE_01729 [Collinsella stercoris DSM 13279]
gi|210159103|gb|EEA90074.1| hypothetical protein COLSTE_01729 [Collinsella stercoris DSM 13279]
Length = 237
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 11/178 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
I ++++ DSRGWF + + + LG+ D VQ+N S++ G RG+H +
Sbjct: 16 GIGGLKVVDLAVHGDSRGWFKENWQRAKMCALGVPDFRIVQNNISYNDRKGVTRGIHAE- 74
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + G +F VD+R S TYG + + + IY+P G + F LE
Sbjct: 75 -PW--DKFISVARGSVFGAWVDLREGSATYGKVYTTVLDPSK--AIYVPRGVGNSFQALE 129
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T Y V +S E V D ++ I WP + +VSE D N P L +
Sbjct: 130 DGTAYTYLVNAHWSAELKGTYTFVNLADPALGIEWP-IPLGEATVSEADLNHPMLADV 186
>gi|220934483|ref|YP_002513382.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thioalkalivibrio sp.
HL-EbGR7]
gi|219995793|gb|ACL72395.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thioalkalivibrio sp.
HL-EbGR7]
Length = 124
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V +++ R F D RG+F++ +S E+ + FVQDN S S G +RG+H Q P
Sbjct: 12 IDGVLVIEPRVFGDHRGFFTEYWSQPRYAEVVRHEQFVQDNLSCSRK-GVLRGVHVQNP- 69
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIY 107
Q LV + G +FD+ VDI SPT+G W + +S N + Y
Sbjct: 70 NPQGNLVYVLYGEVFDLVVDIHLGSPTFGQWYGVTLSVENRKRFY 114
>gi|330945922|gb|EGH47270.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 91
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V IL+ + F D RG+F +++++K + GL FVQDNHS S G +RGLH+Q A
Sbjct: 11 VLILEPKVFGDERGFFYESFNAKAFQAATGLTREFVQDNHSRS-QRGVLRGLHYQ-IENA 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNS 87
Q KLVR G++ D+AVDIRR+S
Sbjct: 69 QGKLVRVTVGKVLDVAVDIRRSS 91
>gi|210633778|ref|ZP_03297849.1| hypothetical protein COLSTE_01766 [Collinsella stercoris DSM 13279]
gi|210159077|gb|EEA90048.1| hypothetical protein COLSTE_01766 [Collinsella stercoris DSM 13279]
Length = 237
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 13/179 (7%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
I ++++ DSRGWF + + + LG+ D+ VQ+N S++ G RG+H +
Sbjct: 16 GIGGLKVVDLAVHGDSRGWFKENWQRAKMTALGIPDLRVVQNNISYNDSRGVTRGIHAE- 74
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + G +F VD+R S T+G + + + IY+P G + F LE
Sbjct: 75 -PW--DKFISVARGSVFGAWVDLREGSETFGKVFTTVLDPSKA--IYVPRGVGNSFQALE 129
Query: 121 MNTEVIYKVTDFYSVEHD---SGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQI 175
T Y V +S+E + V D + I WP+ LD +VS+ D N P L +
Sbjct: 130 DGTAYTYLVDAHWSLELKRTYTFVNLADPELAIEWPIPLDE--ATVSDADLNHPMLKDV 186
>gi|257067486|ref|YP_003153741.1| dTDP-4-dehydrorhamnose reductase [Brachybacterium faecium DSM 4810]
gi|256558304|gb|ACU84151.1| dTDP-4-dehydrorhamnose reductase [Brachybacterium faecium DSM 4810]
Length = 479
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 14/165 (8%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D RGWF + + + + GL D+ VQ+N SF+ G RG+H + P+ K + G
Sbjct: 24 DPRGWFKENWQREKMLAAGLPDLGPVQNNISFNQTVGVTRGIHAE--PWD--KYISVATG 79
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
R+F VD+RR P++G EI+ + + IY+P G + F TLE Y V +S
Sbjct: 80 RVFGAWVDLRRG-PSFGATYWHEITPD--IAIYVPRGVGNAFQTLEAPAAYTYLVNAHWS 136
Query: 135 V---EHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQI 175
E + + D++ I WP+ L+ +S KD+ P L +
Sbjct: 137 AAAQEQYTFLHLADETAAIPWPIPLEQA--ELSAKDRAHPLLADV 179
>gi|306835067|ref|ZP_07468110.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
accolens ATCC 49726]
gi|304569048|gb|EFM44570.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
accolens ATCC 49726]
Length = 461
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 19/177 (10%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF---VQDNHSFSFDCGTIRGLHFQ 59
I +RI++ D+RGWF + + + L E+ + VQ+N S++ G RGLH +
Sbjct: 8 IEGLRIIELDVHGDNRGWFKENWQREKLGEVAPELASFQPVQNNISYN-RTGATRGLHAE 66
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P+ KLV G+IF D+R S T+G V+ E+ +++P G A+GF L
Sbjct: 67 --PWD--KLVSVANGKIFGAWCDLREGSATFGEIVTHEVGPETA--VFVPRGVANGFQAL 120
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSID-ITWPLLDTILPSVSEKDQNLPFLNQI 175
E T Y V + +S E + ++D + WPL VSEKD++LP L +
Sbjct: 121 E-ETSYSYLVNEHWSPE----ARYTGINLDAVEWPLEPR---EVSEKDKHLPALADV 169
>gi|227502493|ref|ZP_03932542.1| dTDP-4-keto-6-deoxyglucose-3, 5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
accolens ATCC 49725]
gi|227076766|gb|EEI14729.1| dTDP-4-keto-6-deoxyglucose-3, 5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
accolens ATCC 49725]
Length = 461
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 19/177 (10%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF---VQDNHSFSFDCGTIRGLHFQ 59
I +RI++ D+RGWF + + + L E+ + VQ+N S++ G RGLH +
Sbjct: 8 IEGLRIIELDVHGDNRGWFKENWQREKLGEVAPELASFQPVQNNISYN-RTGATRGLHAE 66
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P+ KLV G+IF D+R S T+G V+ E+ +++P G A+GF L
Sbjct: 67 --PWD--KLVSVANGKIFGAWCDLREGSATFGEIVTHEVGPETA--VFVPRGVANGFQAL 120
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSID-ITWPLLDTILPSVSEKDQNLPFLNQI 175
E T Y V + +S E + ++D + WPL VSEKD++LP L +
Sbjct: 121 E-ETSYSYLVNEHWSPE----ARYTGINLDAVEWPLEPR---EVSEKDKHLPALADV 169
>gi|289704883|ref|ZP_06501300.1| putative dTDP-4-dehydrorhamnose reductase [Micrococcus luteus SK58]
gi|289558379|gb|EFD51653.1| putative dTDP-4-dehydrorhamnose reductase [Micrococcus luteus SK58]
Length = 471
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 21/171 (12%)
Query: 16 DSRGWFSQTYSSKLLKELGLQD------VFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLV 69
D+RGWF + + + ++ L ++ VQ+N SF+ GT RG+H + P+ K V
Sbjct: 21 DNRGWFKENWQREKIRALAVEHPRLASLAPVQNNISFNDAVGTTRGIHAE--PWD--KYV 76
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKV 129
GRIF VD+R P++G ++E+ +++P G + + TLE +T Y V
Sbjct: 77 AVAHGRIFGAWVDLR-EGPSFGAVATVELGPEKA--VFVPRGVGNSYQTLEPDTAYTYLV 133
Query: 130 TDFYSVEHDSGVAW---QDKSIDITW--PLLDTILPSVSEKDQNLPFLNQI 175
D +S + + D + I W PL D L S+KD+ P L +
Sbjct: 134 NDHWSADAQGQYTFLNLADPTAAIAWPIPLEDAEL---SDKDRAHPMLADV 181
>gi|227832078|ref|YP_002833785.1| dTDP-4-dehydrorhamnose reductase [Corynebacterium aurimucosum ATCC
700975]
gi|262184067|ref|ZP_06043488.1| dTDP-4-dehydrorhamnose reductase [Corynebacterium aurimucosum ATCC
700975]
gi|227453094|gb|ACP31847.1| dTDP-4-dehydrorhamnose reductase [Corynebacterium aurimucosum ATCC
700975]
Length = 454
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 14/161 (8%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + + GL D VQ+N SF+ + G RGLH + P+ KLV +G
Sbjct: 21 DNRGWFKENWQREKMVAAGLPDFQPVQNNVSFNAEKGVTRGLHAE--PWD--KLVSVASG 76
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
R F D+R S T+G V+ E+ + + +++P G A+GF LE Y V D +S
Sbjct: 77 RAFGAWCDLREGSATFGQLVTHELRED--VAVFVPRGVANGFQALEA-CAYSYLVNDHWS 133
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D+ + + + WPL T +S+KD+ P L +
Sbjct: 134 P--DAEYTCVNLGM-VDWPLEPT---EISDKDKEHPALADV 168
>gi|158312617|ref|YP_001505125.1| dTDP-4-dehydrorhamnose 35-epimerase related [Frankia sp. EAN1pec]
gi|158108022|gb|ABW10219.1| dTDP-4-dehydrorhamnose 35-epimerase related [Frankia sp. EAN1pec]
Length = 204
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 93/180 (51%), Gaps = 18/180 (10%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHFQRPPYAQ 65
+ ED RGWF + + L + G+ F VQ++ S++ G RG H + P+
Sbjct: 21 VFDVTSIEDERGWFQEKFHHAKLVDAGIPASFRVVQNSLSYNKKLGVTRGFHAE--PWD- 77
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
K + + GR+F VD+R ++G V++E+ N +++P G A+ + T+E +T
Sbjct: 78 -KYISVVKGRVFCAYVDLRAGK-SFGTVVTVELDRNRA--VFLPQGVANSYQTIEDDTYY 133
Query: 126 IYKVTDFYSVE-HDSG--VAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+Y V + +S + +DS V D + + W PL + + +S++DQ+ P L + SP E
Sbjct: 134 LYSVNEHWSADRYDSYVFVNLADPVLGVQWPVPLREAV---ISDRDQHHPSLADV-SPVE 189
>gi|55821250|ref|YP_139692.1| dTDP-4-keto-L-rhamnose reductase [Streptococcus thermophilus LMG
18311]
gi|55823162|ref|YP_141603.1| dTDP-4-keto-L-rhamnose reductase [Streptococcus thermophilus
CNRZ1066]
gi|116627989|ref|YP_820608.1| dTDP-4-keto-L-rhamnose reductase [Streptococcus thermophilus LMD-9]
gi|55737235|gb|AAV60877.1| dTDP-4-keto-L-rhamnose reductase [Streptococcus thermophilus LMG
18311]
gi|55739147|gb|AAV62788.1| dTDP-4-keto-L-rhamnose reductase [Streptococcus thermophilus
CNRZ1066]
gi|116101266|gb|ABJ66412.1| dTDP-4-dehydrorhamnose 3,5-epimerase or related enzyme
[Streptococcus thermophilus LMD-9]
gi|312278578|gb|ADQ63235.1| dTDP-4-dehydrorhamnose 3,5-epimerase enzyme-like protein
[Streptococcus thermophilus ND03]
Length = 197
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFTEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADEGKVLGAWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDKVAYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+DI W L+ VSE D+N PFL +
Sbjct: 144 DYWALELKPKYAFVNYADPSLDIEWENLEEA--EVSEADKNHPFLKDV 189
>gi|229815501|ref|ZP_04445831.1| hypothetical protein COLINT_02551 [Collinsella intestinalis DSM
13280]
gi|229808921|gb|EEP44693.1| hypothetical protein COLINT_02551 [Collinsella intestinalis DSM
13280]
Length = 215
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 12/161 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
DSRGWF + + + ++ LGL D+ VQ+N SF+ G RG+H + P+ + V C G
Sbjct: 39 DSRGWFKENWQREKMRALGLPDMGPVQNNISFNDRKGVTRGIHAE--PWDKFISVAC--G 94
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
R+F VD+R S ++G + E+ + IY+P G + + LE T Y V +S
Sbjct: 95 RVFGAWVDLRPGS-SFGQVYTCELDPSRA--IYVPRGVGNSYQALEDGTAYTYLVNAHWS 151
Query: 135 VEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
E S V D + I WP+ + +SE D+ P L
Sbjct: 152 AELKSTYTFVNLADPDLGIEWPIPLSEC-ELSEADKAHPAL 191
>gi|308390302|gb|ADO32600.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Kitasatospora
kifunensis]
Length = 199
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 5/164 (3%)
Query: 12 RKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
++ D RG F + Y L+E+ G Q N S S +RG+HF P QAK V
Sbjct: 17 QQHGDPRGLFMEWYRFDRLEEVVGHPLRLAQGNLSVSAK-DVVRGIHFADVPPGQAKYVS 75
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
C+ G + D+ VD+R SP +G W + + +YIP G HGF L + + Y +
Sbjct: 76 CVRGAVLDVVVDLRVGSPAFGKWEFVRLDDTERKSVYIPEGVGHGFCALTDDATLSYVCS 135
Query: 131 DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ Y+ + V D + I WP P +S +D P L +
Sbjct: 136 ETYNPTGEHAVHPLDPDLGIEWP---ADAPQLSARDAAAPTLAE 176
>gi|121612136|ref|YP_001001086.1| putative nucleotide-sugar epimerase-dehydratase [Campylobacter
jejuni subsp. jejuni 81-176]
gi|167005983|ref|ZP_02271741.1| putative nucleotide-sugar epimerase-dehydratase [Campylobacter
jejuni subsp. jejuni 81-176]
gi|205356129|ref|ZP_03222896.1| putative nucleotide sugar epimerase dehydratase [Campylobacter
jejuni subsp. jejuni CG8421]
gi|37719584|gb|AAR01889.1| putative dTDP-4-dehydro rhamnose 3,5-epimerase [Campylobacter
jejuni]
gi|37719608|gb|AAR01912.1| putative dTDP-4-dehydro rhamnose 3,5-epimerase [Campylobacter
jejuni]
gi|56797607|emb|CAI38881.1| putative nucleotide-sugar epimerase-dehydratase [Campylobacter
jejuni subsp. jejuni 81-176]
gi|62865925|gb|AAY17134.1| unknown [Campylobacter jejuni subsp. jejuni 81-176]
gi|87249673|gb|EAQ72632.1| putative nucleotide-sugar epimerase-dehydratase [Campylobacter
jejuni subsp. jejuni 81-176]
gi|205345972|gb|EDZ32608.1| putative nucleotide sugar epimerase dehydratase [Campylobacter
jejuni subsp. jejuni CG8421]
Length = 181
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 76/170 (44%), Gaps = 21/170 (12%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL---GLQ---DVFVQDNHSFSFDCGTIRGLHFQ 59
V I+ KF D RG ++SK + +L GL+ D F+ H+ IRG+H
Sbjct: 16 VYIITPNKFRDLRGEIWTAFTSKAVDKLLPNGLKFIHDKFIHSKHN------VIRGIHGD 69
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Y KL C+ G I + VD R++SPTY + I+ +N I +P GF +
Sbjct: 70 VKTY---KLATCVYGEIHQVVVDCRKDSPTYLKYEKFIINQDNQQIILVPAGFGNAHYVT 126
Query: 120 EMNTEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ YK D+ AW D+ I I WP T P +SE+D
Sbjct: 127 SESAVYYYKCAYKGDYVDAPDQFTYAWNDERIGIDWP---TNSPILSERD 173
>gi|323357015|ref|YP_004223411.1| dTDP-4-dehydrorhamnose reductase [Microbacterium testaceum StLB037]
gi|323273386|dbj|BAJ73531.1| dTDP-4-dehydrorhamnose reductase [Microbacterium testaceum StLB037]
Length = 469
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 14/165 (8%)
Query: 16 DSRGWFSQTYSSKLLKELG--LQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
D+RGWF + + + + G L D VQ+N SF+ GT RG+H + P+ K V
Sbjct: 29 DTRGWFKENWQREKMLAAGIDLPDFGPVQNNISFNDAAGTTRGIHAE--PWD--KYVSVA 84
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
GRIF VD+R T+G + E+ A+ I++P G + + TLE +T Y V D
Sbjct: 85 TGRIFGAWVDLREGD-TFGAVFTAELDASTA--IFVPRGVGNSYQTLEPDTAYTYLVNDH 141
Query: 133 YSVEHD-SGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQI 175
+S + + + D++ I WP+ LD++ +S KD P L +
Sbjct: 142 WSPDATYTFLNLADETAAIAWPIPLDSV--EISAKDLQHPRLADV 184
>gi|320095968|ref|ZP_08027584.1| dTDP-4-dehydrorhamnose reductase [Actinomyces sp. oral taxon 178
str. F0338]
gi|319977099|gb|EFW08826.1| dTDP-4-dehydrorhamnose reductase [Actinomyces sp. oral taxon 178
str. F0338]
Length = 472
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 89/167 (53%), Gaps = 13/167 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + + LGL D VQ+N SF+ + G RG+H + P+ K V G
Sbjct: 28 DNRGWFKENWQREKMVGLGLPDFRPVQNNISFNDEVGVTRGIHAE--PW--DKFVSVATG 83
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
R+F VD+R P++G + I + G +++P G + + TLE T Y V +S
Sbjct: 84 RVFGAWVDLREG-PSFGTVYTTVI--DPGTAVFVPKGVGNAYQTLEPATAYTYLVNAHWS 140
Query: 135 VEHD-SGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFLNQIDSPF 179
+ + + D+++ + WP+ L+ + +S+KD+ P L + +PF
Sbjct: 141 PDARYTFLNLADETVAVPWPIPLERAV--LSDKDRAHPRLADV-TPF 184
>gi|169836967|ref|ZP_02870155.1| dTDP-4-dehydrorhamnose reductase [candidate division TM7
single-cell isolate TM7a]
Length = 169
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 9/149 (6%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
++K D+RGWF + Y + ++ LGL VQ+N SF+ G RGLH + P+
Sbjct: 23 VVKLPVHGDNRGWFKENYQKEKMEALGLPSFDIVQNNISFNDKAGATRGLHAE--PW--N 78
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
K + GR+F D+R+ ++G + EI N G I++P G A+G+ L+ N
Sbjct: 79 KFISTANGRVFGAWCDLRKGD-SFGRVFTHEI--NPGTAIFVPKGVANGYQALDDNIAYT 135
Query: 127 YKVTDFYSVEHD-SGVAWQDKSIDITWPL 154
Y V +S + + V D ++ I WP+
Sbjct: 136 YLVDAHWSPDAKYTFVNLFDPALGINWPI 164
>gi|229821452|ref|YP_002882978.1| dTDP-4-dehydrorhamnose 35-epimerase related [Beutenbergia cavernae
DSM 12333]
gi|229567365|gb|ACQ81216.1| dTDP-4-dehydrorhamnose 35-epimerase related [Beutenbergia cavernae
DSM 12333]
Length = 189
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 15/179 (8%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ + +L ++ D RG + + + + E GL Q + G IRGLH ++
Sbjct: 16 IDGLHVLHVKEIHDERGTIREFFRASAMAEAGLHGGAWQQLNLTETSRGAIRGLHGEQ-- 73
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
KLV +AG+ F VD R S T G V++ ++ G+Q+ +P G +GF L
Sbjct: 74 --MTKLVSVVAGQAFGAYVDARPGSATAGAVVTVPLTL--GVQVLVPPGVCNGFQALADG 129
Query: 123 TEVIYKVTDFYSVEHDSGVAWQ--DKSIDITWPLLDTILPS----VSEKDQNLPFLNQI 175
T+ +Y D V G A D ++ I WP+ + P+ +S KD LP L +
Sbjct: 130 TQYLY-CFDAEWVPGMPGRAVHPLDPALGIAWPI--AVDPADRERLSAKDAGLPSLADV 185
>gi|229551000|ref|ZP_04439725.1| possible dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus
rhamnosus LMS2-1]
gi|258538289|ref|YP_003172788.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus Lc
705]
gi|229315595|gb|EEN81568.1| possible dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus
rhamnosus LMS2-1]
gi|257149965|emb|CAR88937.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus Lc
705]
Length = 196
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 24/185 (12%)
Query: 2 NINPVRILKTRKFEDSRG----WFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLH 57
I+ ++I+ + D RG F Q+ S++L + + Q N + + G +RGLH
Sbjct: 14 EIDGLKIIHVKMVTDERGTVRELFRQSQHSQVLVNPNM--AWKQVNLTRT-KRGAVRGLH 70
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
+ A +KLV G F VD RR+SPT G V++ ++ G+Q+++P G +GF
Sbjct: 71 GE----AMSKLVTVAHGEAFGAYVDTRRDSPTLGSVVTVRLTP--GVQVFVPQGVCNGFQ 124
Query: 118 TLEMNTEVIYKVTDFYSVEHD---SGVAWQ--DKSIDITWPLL--DTILPSVSEKDQNLP 170
+ +TE +Y F+ E + SGVA D + I WP+ L +S+KD P
Sbjct: 125 AVADDTEYLY----FFDNEWEKGMSGVALTPLDPDLGIEWPIAIKPDNLAQISKKDSEAP 180
Query: 171 FLNQI 175
L ++
Sbjct: 181 TLKEV 185
>gi|322389834|ref|ZP_08063375.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus parasanguinis
ATCC 903]
gi|321143415|gb|EFX38852.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus parasanguinis
ATCC 903]
Length = 197
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNISFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADEGKVLGTWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLTDKVAYTYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+DI W L+ VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLDIQWENLEEA--EVSEADKNHPLLKDV 189
>gi|228476886|ref|ZP_04061531.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus salivarius
SK126]
gi|228251460|gb|EEK10605.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus salivarius
SK126]
Length = 197
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADEGKVLGTWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDKVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+DI W L+ VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLDIKWENLEEA--EVSEADKNHPLLKDV 189
>gi|322516602|ref|ZP_08069516.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus vestibularis
ATCC 49124]
gi|322124872|gb|EFX96296.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus vestibularis
ATCC 49124]
Length = 197
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADEGKVLGTWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDKVAYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+DI W L+ VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLDIKWENLEEA--EVSEADKNHPLLKDV 189
>gi|288919318|ref|ZP_06413653.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EUN1f]
gi|288349312|gb|EFC83554.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EUN1f]
Length = 191
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 18/172 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
D RGWF + + L GL + F VQ + S++ G RG H + P+ K + +A
Sbjct: 28 DERGWFQEKFHRAKLVAAGLPESFEVVQTSVSYNRQAGVTRGFHAE--PWD--KYISVVA 83
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G++F +D+RR +G V++EI +NG +++P G A+ F TL +T +Y V +
Sbjct: 84 GQVFCAFLDLRRGE-NFGRVVTVEI--DNGRAVFLPRGVANSFQTLVDDTYYLYSVNRHW 140
Query: 134 SVEHDSG---VAWQDKSIDITWPL-LDTILPSVSEKDQ-NLPFLNQIDSPFE 180
S + V D + + WP+ LD + +SE+D+ ++P + PFE
Sbjct: 141 SADQYDEYVFVNLADPEVGVHWPIPLDKAV--ISERDRGHVPLADA--RPFE 188
>gi|153952059|ref|YP_001397852.1| putative nucleotidyl-sugar epimerase [Campylobacter jejuni subsp.
doylei 269.97]
gi|152939505|gb|ABS44246.1| putative nucleotidyl-sugar epimerase [Campylobacter jejuni subsp.
doylei 269.97]
Length = 177
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 11/167 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V I+K KF+D RG ++ + L L V + + + IRG+H
Sbjct: 13 LKGVFIIKPNKFKDLRGEIWTAFTQEQLAHLA--PVPFKHDKFITSKKDVIRGIHGDTKT 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y KL C+ G I + VD R +SPTY + S I+ N L I +P GF + +
Sbjct: 71 Y---KLATCLYGEILQVVVDCREDSPTYLKYESFVINPQNQLLILVPKGFGNAHLVRSNE 127
Query: 123 TEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK ++ E AW D+ I + W + P++SE+D
Sbjct: 128 AVYYYKCAYEGEYVDAEEQFTYAWNDERIGVKWGVEK---PTLSERD 171
>gi|326486425|gb|ADZ76254.1| putative nucleotide-sugar epimerase/dehydratase [Campylobacter
jejuni subsp. jejuni]
Length = 181
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 75/170 (44%), Gaps = 21/170 (12%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL---GLQ---DVFVQDNHSFSFDCGTIRGLHFQ 59
V I+ KF D RG ++S+ + L GL+ D F+ H+ IRG+H
Sbjct: 16 VYIITPNKFRDLRGEIWTAFTSEAIDNLLPNGLKFIHDKFIHSKHN------VIRGIHGD 69
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Y KL C+ G I + VD R++SPTY + I+ +N I +P GF +
Sbjct: 70 VKTY---KLATCVYGEIHQVVVDCRKDSPTYLKYEKFIINQDNQQIILVPAGFGNAHYVS 126
Query: 120 EMNTEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ YK D+ AW D+ I I WP T P +SE+D
Sbjct: 127 SESAVYYYKCAYKGDYADAPDQFTYAWNDERIGIDWP---TNSPILSERD 173
>gi|116627495|ref|YP_820114.1| dTDP-4-dehydrorhamnose 3,5-epimerase or related enzyme
[Streptococcus thermophilus LMD-9]
gi|116100772|gb|ABJ65918.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus thermophilus
LMD-9]
gi|312278013|gb|ADQ62670.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus thermophilus
ND03]
Length = 191
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 18/180 (10%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ + I++ + D RG + + ++ + Q N + + G +RGLH +
Sbjct: 15 IDGLYIIQPKTVTDERGTVRELFRFSAYSDILPSTTWSQINLTQT-KKGAVRGLHAE--- 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ +KLV G F + VDIR +S ++G V++++ G+Q+++P G +GF LE N
Sbjct: 71 -SMSKLVTVAKGSAFGVYVDIRNDSTSFGKIVTVDLYP--GVQVFVPNGVCNGFQALENN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKS-----IDITWPLL--DTILPSVSEKDQNLPFLNQI 175
TE +Y F+ E G++ Q S + I WP+ L +SEKD P L I
Sbjct: 128 TEYLY----FFDSEWIPGMSGQALSPLASDLKIEWPIPINPNNLEQISEKDLKAPTLQDI 183
>gi|315639162|ref|ZP_07894327.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter upsaliensis
JV21]
gi|315480757|gb|EFU71396.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter upsaliensis
JV21]
Length = 177
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 72/171 (42%), Gaps = 19/171 (11%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGL----QDVFVQDNHSFSFDCGTIRGLHF 58
+ V I+K KF+D RG ++ + L L D F+ IRG+H
Sbjct: 13 LKGVFIIKPNKFKDLRGEIWTAFTQEQLAHLAAVPFKHDKFITSKKD------VIRGIHG 66
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
Y KL C+ G I + VD R +SPTY + S I+ N L I +P GF + +
Sbjct: 67 DTKTY---KLATCLYGEILQVVVDCREDSPTYLKYESFVINPQNQLLILVPKGFGNAHLV 123
Query: 119 LEMNTEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK ++ E AW D+ I + W + IL SE+D
Sbjct: 124 RSNEAVYYYKCAYEGEYVDAEEQFTYAWNDERIGVKWGIEKPIL---SERD 171
>gi|123502962|ref|XP_001328402.1| dTDP-4-dehydrorhamnose 3,5-epimerase family protein [Trichomonas
vaginalis G3]
gi|121911345|gb|EAY16179.1| dTDP-4-dehydrorhamnose 3,5-epimerase family protein [Trichomonas
vaginalis G3]
Length = 347
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
Query: 52 TIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTG 111
IRGLH KLV+C G+ FD+ VD+R +SPT+ W I + ++IP
Sbjct: 58 VIRGLHCS----PHHKLVQCPTGKAFDVVVDLRPDSPTFLQWDGHWIDRTH--HMFIPPF 111
Query: 112 FAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLP 170
AHGF E +T ++Y ++ E D + + DK++++ WP +D +S KD+ P
Sbjct: 112 CAHGFFASEDDTAILYLQGGCFAPELDFSLNYLDKTVNVDWPKPIDADDYVISPKDRGNP 171
Query: 171 FLNQ 174
L++
Sbjct: 172 MLDE 175
>gi|146318954|ref|YP_001198666.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus suis 05ZYH33]
gi|146321162|ref|YP_001200873.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus suis 98HAH33]
gi|253752023|ref|YP_003025164.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus suis SC84]
gi|253753848|ref|YP_003026989.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus suis P1/7]
gi|253755276|ref|YP_003028416.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus suis BM407]
gi|33357526|pdb|1NXM|A Chain A, The High Resolution Structures Of Rmlc From Streptococcus
Suis
gi|33357527|pdb|1NXM|B Chain B, The High Resolution Structures Of Rmlc From Streptococcus
Suis
gi|33357534|pdb|1NYW|A Chain A, The High Resolution Structures Of Rmlc From Streptoccus
Suis In Complex With Dtdp-D-Glucose
gi|33357535|pdb|1NYW|B Chain B, The High Resolution Structures Of Rmlc From Streptoccus
Suis In Complex With Dtdp-D-Glucose
gi|33357540|pdb|1NZC|A Chain A, The High Resolution Structures Of Rmlc From Streptococcus
Suis In Complex With Dtdp-D-Xylose
gi|33357541|pdb|1NZC|B Chain B, The High Resolution Structures Of Rmlc From Streptococcus
Suis In Complex With Dtdp-D-Xylose
gi|33357542|pdb|1NZC|C Chain C, The High Resolution Structures Of Rmlc From Streptococcus
Suis In Complex With Dtdp-D-Xylose
gi|33357543|pdb|1NZC|D Chain D, The High Resolution Structures Of Rmlc From Streptococcus
Suis In Complex With Dtdp-D-Xylose
gi|118138554|pdb|2IXL|A Chain A, Rmlc S. Suis With Dtdp-Rhamnose
gi|118138555|pdb|2IXL|B Chain B, Rmlc S. Suis With Dtdp-Rhamnose
gi|118138556|pdb|2IXL|C Chain C, Rmlc S. Suis With Dtdp-Rhamnose
gi|118138557|pdb|2IXL|D Chain D, Rmlc S. Suis With Dtdp-Rhamnose
gi|23504818|emb|CAD49091.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus suis]
gi|145689760|gb|ABP90266.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus suis 05ZYH33]
gi|145691968|gb|ABP92473.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus suis 98HAH33]
gi|251816312|emb|CAZ51941.1| putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
suis SC84]
gi|251817740|emb|CAZ55491.1| putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
suis BM407]
gi|251820094|emb|CAR46373.1| putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
suis P1/7]
gi|292558607|gb|ADE31608.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus suis GZ1]
gi|319758390|gb|ADV70332.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus suis JS14]
Length = 197
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGTWVDLREGE-TFGNTYQTVIDASK--SIFVPRGVANGFQVLSDFVAYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+DI W L+ VSE D+N PFL +
Sbjct: 144 DYWALELKPKYAFVNYADPSLDIKWENLEEA--EVSEADENHPFLKDV 189
>gi|223933262|ref|ZP_03625252.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Streptococcus
suis 89/1591]
gi|302024035|ref|ZP_07249246.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus suis 05HAS68]
gi|330832506|ref|YP_004401331.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus suis ST3]
gi|223898076|gb|EEF64447.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Streptococcus
suis 89/1591]
gi|329306729|gb|AEB81145.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus suis ST3]
Length = 197
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGTWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDFVAYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+DI W L+ VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLDIQWENLEEA--EVSEADKNHPLLKDV 189
>gi|319947197|ref|ZP_08021431.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus australis ATCC
700641]
gi|319747245|gb|EFV99504.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus australis ATCC
700641]
Length = 197
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFSRKH-VLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADEGKVLGTWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDKVAYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+DI W L+ VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLDIQWENLEEA--EVSEADKNHPLLKDV 189
>gi|312862914|ref|ZP_07723154.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus
vestibularis F0396]
gi|311101774|gb|EFQ59977.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus
vestibularis F0396]
Length = 197
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPKSFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADEGKVLGTWVDLREGE-TFGKTYQTVIDASKG--IFVPRGVANGFQVLSDKVAYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+DI W L+ VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLDIKWENLEEA--EVSEADKNHPLLKDV 189
>gi|322372727|ref|ZP_08047263.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
sp. C150]
gi|321277769|gb|EFX54838.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
sp. C150]
Length = 197
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADEGKVLGTWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDKVAYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+DI W L VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVYYADPSLDIKWENLKEA--EVSEADKNHPLLKDV 189
>gi|317506042|ref|ZP_07963872.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Segniliparus rugosus ATCC
BAA-974]
gi|316255700|gb|EFV14940.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Segniliparus rugosus ATCC
BAA-974]
Length = 199
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 7/148 (4%)
Query: 16 DSRGWFSQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQRPP-----YAQAKLV 69
D RG ++ + + +E +D Q N S S G +RG+H P Q K V
Sbjct: 22 DDRGVNAELFRAGATREATGRDFTTAQVNCSVS-KAGVLRGVHLALGPDGTLAGGQEKYV 80
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKV 129
+G +FD+ VD+R +SPT+G W ++ +S +++ G H + L +T ++Y
Sbjct: 81 TVASGSVFDVVVDLRSDSPTFGKWEAVLLSGERRNAVFLSAGLGHAVLALTEDTVLLYLC 140
Query: 130 TDFYSVEHDSGVAWQDKSIDITWPLLDT 157
+ Y + V D ++ I WP D
Sbjct: 141 SSEYDPRLERSVDALDPALAIAWPSKDA 168
>gi|296876234|ref|ZP_06900287.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus parasanguinis
ATCC 15912]
gi|296432739|gb|EFH18533.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus parasanguinis
ATCC 15912]
Length = 197
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNISFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R ++G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADEGKVLGTWVDLREGD-SFGNTYQTVIDASKG--IFVPRGVANGFQVLTDKVAYTYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+DI W L+ VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLDIQWENLEEA--EVSEADKNHPLLKDV 189
>gi|255025970|ref|ZP_05297956.1| hypothetical protein LmonocytFSL_05755 [Listeria monocytogenes
FSL J2-003]
Length = 83
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V+++K + F D RG+F ++Y+ K E G+ F+QDNHS S + G +RG+H+Q P AQ
Sbjct: 11 VKLVKPKVFGDHRGFFMESYNEKAFHEAGIDMKFIQDNHSLSVEAGVLRGMHYQMNPKAQ 70
Query: 66 AKL 68
KL
Sbjct: 71 TKL 73
>gi|327463279|gb|EGF09600.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis SK1]
Length = 203
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 37 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 92
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L N Y V
Sbjct: 93 ADDGKVLGTWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDNVSYSYLVN 149
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D+N P L +
Sbjct: 150 DYWALELKPKYAFVNYADPALGIQWENLEAA--EVSEADKNHPLLKDV 195
>gi|312867299|ref|ZP_07727508.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus
parasanguinis F0405]
gi|311097000|gb|EFQ55235.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus
parasanguinis F0405]
Length = 197
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNISFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R ++G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADEGKVLGTWVDLREGD-SFGNTYQTVIDASKG--IFVPRGVANGFQVLTDKVAYTYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+DI W L+ VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLDIQWENLEEA--EVSEADKNHPLLKDV 189
>gi|319939395|ref|ZP_08013755.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase rmlC [Streptococcus
anginosus 1_2_62CV]
gi|319811381|gb|EFW07676.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase rmlC [Streptococcus
anginosus 1_2_62CV]
Length = 197
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMVPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSETVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W LD VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPALGIEWESLDQA--EVSEADKNHPMLKDV 189
>gi|258507102|ref|YP_003169853.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus GG]
gi|257147029|emb|CAR86002.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus GG]
gi|259648472|dbj|BAI40634.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus
rhamnosus GG]
Length = 196
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 24/185 (12%)
Query: 2 NINPVRILKTRKFEDSRG----WFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLH 57
I+ ++I+ + D RG F Q+ S++L + + Q N + + G +RGLH
Sbjct: 14 EIDGLKIIHVKMVTDERGTVRELFRQSQHSQVLVNPNM--AWKQVNLTRT-KRGAVRGLH 70
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
+ A +KLV G F VD RR+SPT G V++ ++ G+Q+++P G +GF
Sbjct: 71 GE----AMSKLVTVAHGEAFGAYVDTRRDSPTLGSVVTVRLTP--GVQVFVPQGVCNGFQ 124
Query: 118 TLEMNTEVIYKVTDFYSVEHD---SGVAWQ--DKSIDITWPLL--DTILPSVSEKDQNLP 170
+ +TE +Y F+ E +GVA D + I WP+ L +S+KD P
Sbjct: 125 AVADDTEYLY----FFDNEWQKGMTGVALTPLDPDLGIEWPIAIKPDNLAQISKKDSEAP 180
Query: 171 FLNQI 175
L ++
Sbjct: 181 TLKEV 185
>gi|326486404|gb|ADZ76234.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni
subsp. jejuni]
gi|326486472|gb|ADZ76299.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni
subsp. jejuni]
Length = 181
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 76/170 (44%), Gaps = 21/170 (12%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL---GLQ---DVFVQDNHSFSFDCGTIRGLHFQ 59
V I+ KF D RG ++SK + +L GL+ D F+ H+ IRG+H
Sbjct: 16 VYIITPNKFRDLRGEIWTAFTSKAVDKLLPNGLKFIHDKFIHSKHN------VIRGIHGD 69
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Y KL C+ G + + VD R++SPTY I+ +N I +P GF +
Sbjct: 70 VKTY---KLATCVYGEVHQVVVDCRKDSPTYLKHERFIINQDNQQIILVPAGFGNAHYVS 126
Query: 120 EMNTEVIYKVTDF--YSVEHDS-GVAWQDKSIDITWPLLDTILPSVSEKD 166
+ YK Y HD AW D+ I I WP T P +SE+D
Sbjct: 127 SESAVYYYKCAYLGEYMDAHDQFTYAWNDERIGIDWP---TNSPILSERD 173
>gi|326407909|gb|ADZ64979.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactococcus lactis subsp.
lactis CV56]
Length = 194
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 92/182 (50%), Gaps = 20/182 (10%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV--FVQDNHSFSFDCGTIRGLHFQR 60
IN ++++ ++ D+RG + Y E V + Q N + + G +RGLH +
Sbjct: 17 INGLQVINSKMVTDNRGTVRELYRQSSYSETLPSSVTSWKQVNLTRT-KRGAVRGLHGE- 74
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
A +KLV G F + VD R S T G +++ I+ G+Q+++P G +GF +L+
Sbjct: 75 ---AMSKLVTVAHGSAFGVYVDTRPGSETIGKVMTVNITP--GVQVFVPQGVCNGFQSLD 129
Query: 121 MNTEVIYKVTDFYSVEHD---SGVAWQ--DKSIDITWPL-LD-TILPSVSEKDQNLPFLN 173
+TE +Y F+ E + SGVA D + I WP+ +D L +SEKD P L
Sbjct: 130 DDTEYLY----FFDNEWNPRMSGVALTPLDADLKIDWPIQIDPGNLEQISEKDSRAPRLR 185
Query: 174 QI 175
+I
Sbjct: 186 EI 187
>gi|57505201|ref|ZP_00371130.1| dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase, putative
[Campylobacter upsaliensis RM3195]
gi|57016337|gb|EAL53122.1| dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase, putative
[Campylobacter upsaliensis RM3195]
Length = 177
Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 11/167 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V I+K KF+D RG ++ + L + L V + + + IRG+H
Sbjct: 13 LKGVFIIKPNKFKDLRGEIWTAFTQEQL--VHLAPVPFKHDKFITSKKDVIRGIHGDTKT 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y KL C+ G I + VD R +SPTY + S I+ N L I +P GF + +
Sbjct: 71 Y---KLATCLYGEILQVVVDCREDSPTYLKYESFVINPQNQLLILVPKGFGNAHLVRSNE 127
Query: 123 TEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK ++ E AW D+ I + W + IL SE+D
Sbjct: 128 AVYYYKCAYEGEYVDAEEQFTYAWNDERIGVKWGVEKPIL---SERD 171
>gi|241888608|ref|ZP_04775915.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Gemella haemolysans
ATCC 10379]
gi|241864631|gb|EER69006.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Gemella haemolysans
ATCC 10379]
Length = 187
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 14/171 (8%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF----VQDNHSFSFDCGTIRGLHF 58
I+ + +L + D RG+F + + L + G+ + F +Q+N S S + GT+RG+H
Sbjct: 10 IDGLLVLTSPLHHDDRGYFLENWKKNDLIKFGVPEDFFDNDLQNNVSVS-NKGTLRGMHC 68
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
Q AKL+ G VD+RR S TY L++ G+ +++P G A+G +
Sbjct: 69 Q----GWAKLMTVAWGTFRMCFVDLRRESTTYKKVTCLDVKP--GMVVFVPEGVANGAQS 122
Query: 119 LEMNTEVIYKVTDFYSV-EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
L N + Y VT +Y+ E G+ D +++ W + T P +SEKD N
Sbjct: 123 LVENGILNYIVTGYYNPNEKYLGITPIDLKLNLPWDM--TTTPIISEKDMN 171
>gi|222153258|ref|YP_002562435.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus uberis
0140J]
gi|222114071|emb|CAR42478.1| putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
uberis 0140J]
Length = 197
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMIPLGFPESFFAEDKLQNNVSFSRKH-VLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R ++G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADEGKVLGTWVDLREGD-SFGQVYQTVIDASKG--IFVPRGVANGFQVLSDKVAYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S++I W L+ VSE D+N PFL +
Sbjct: 144 DYWALELKPKYAFVNYADPSLNIAWENLEEA--EVSEADKNHPFLKDV 189
>gi|255324210|ref|ZP_05365332.1| dtdp-4-dehydrorhamnose 3,5-epimerase, dtdp-dehydrorhamnose
reductase [Corynebacterium tuberculostearicum SK141]
gi|255298726|gb|EET78021.1| dtdp-4-dehydrorhamnose 3,5-epimerase, dtdp-dehydrorhamnose
reductase [Corynebacterium tuberculostearicum SK141]
Length = 451
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 80/163 (49%), Gaps = 17/163 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF---VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
D+RGWF + + + L + VQ+N SF+ G RGLH + P+ KLV
Sbjct: 21 DNRGWFKENWQREKFTGLAPELASFQPVQNNISFNH-AGATRGLHAE--PWD--KLVSVA 75
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
GRIF D+R S ++G V+ E+ +++P G A+GF LE T Y V +
Sbjct: 76 QGRIFGAWCDLREGSESFGEVVTHEVGPETA--VFVPRGVANGFQALE-ETSYCYLVNEH 132
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+S E + A + +I + WPL T +SEKD P L +
Sbjct: 133 WSAE--ARYAAVNLNI-VDWPLEPT---EISEKDTQHPALEDV 169
>gi|300779957|ref|ZP_07089813.1| probable dTDP-4-keto-6-deoxyglucose-3, 5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
genitalium ATCC 33030]
gi|300534067|gb|EFK55126.1| probable dTDP-4-keto-6-deoxyglucose-3, 5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
genitalium ATCC 33030]
Length = 449
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 75/171 (43%), Gaps = 21/171 (12%)
Query: 5 PVRILKTRKFE---DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
P+ L+ R D+RGWF + ++ + Q+N SF+ G RG+H +
Sbjct: 11 PIEGLEVRTLTVHGDNRGWFKENWAGDPAMRV------EQNNVSFNAQRGATRGMHAE-- 62
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K V GR++ VD+R SPT+G EI + +++P G A+GF LE
Sbjct: 63 PWD--KYVSVATGRVYGAWVDLREGSPTFGAKYGCEIGPDTA--VFVPRGIANGFQALED 118
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
T IY +S +S WPL T VS KD P L
Sbjct: 119 ATTYIYLCNARWSPHAQYAFCSYRES---EWPLEPT---EVSAKDLEHPML 163
>gi|303288449|ref|XP_003063513.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455345|gb|EEH52649.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 549
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 17/174 (9%)
Query: 13 KFEDSRGWFSQTYSSKLLKEL------GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+ D RG+ Y E G + V + +H G +RGL ++
Sbjct: 23 RARDHRGYTQDLYRDDSYPEHVQPPEPGHRHVSLSHSHR-----GVLRGLLVT----YRS 73
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
+LV + G I+D+ VD R S TY W +S+ N Q+++P G AHGF+ LE + +V+
Sbjct: 74 RLVSVVKGAIYDVIVDCRPESRTYRRWCVAIVSSANRRQVFVPGGCAHGFLVLE-DADVL 132
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSV-SEKDQNLPFLNQIDSPF 179
+ E++ + +D ++ + WP LD + ++ S++D P L Q F
Sbjct: 133 VHSSTREDPENELTINARDPALGVYWPRLDDVREAITSDEDGAAPPLLQAHDRF 186
>gi|311741017|ref|ZP_07714842.1| dTDP-4-keto-6-deoxyglucose-3, 5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311303819|gb|EFQ79897.1| dTDP-4-keto-6-deoxyglucose-3, 5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 451
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 82/163 (50%), Gaps = 17/163 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF---VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
D+RGWF + + + L + VQ+N SF+ G RGLH + P+ KLV
Sbjct: 21 DNRGWFKENWQREKFTGLAPELASFQPVQNNISFNH-AGATRGLHAE--PWD--KLVSVA 75
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
G+IF D+R S ++G V+ E+ +++P G A+GF LE T Y V +
Sbjct: 76 QGKIFGAWCDLREGSESFGEVVTHEVGPETA--VFVPRGVANGFQALE-ETSYCYLVNEH 132
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+S E + A + +I + WPL T +SEKD+ P L ++
Sbjct: 133 WSAE--ARYAAVNLNI-VDWPLEPT---EISEKDKQHPDLAEV 169
>gi|315221452|ref|ZP_07863373.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus
anginosus F0211]
gi|315189571|gb|EFU23265.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus
anginosus F0211]
Length = 197
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMVPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W LD VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPALGIEWENLDQA--EVSEADKNHPMLKDV 189
>gi|296111855|ref|YP_003622237.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Leuconostoc kimchii IMSNU
11154]
gi|295833387|gb|ADG41268.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Leuconostoc kimchii IMSNU
11154]
Length = 198
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDN---HSFSFD-CGTIRGLHFQRPPYAQAKLVRC 71
D+RGWF + + + + LG + F QDN ++ S G +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFQDNKLQNNVSLSRKGVLRGLHAE--PWDKYISV-A 87
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
GR+ VD+R ++G I A+ G IY+P G A+GF L Y V D
Sbjct: 88 DNGRVLGSWVDLREGD-SFGHVYQTVIDASKG--IYVPRGVANGFQVLSETVSYSYLVND 144
Query: 132 FYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
++++ A + D ++ ITW D VSE D+N P L +
Sbjct: 145 YWALALKPKYAFVNYADPALGITWD--DVENAEVSEADKNHPLLEDV 189
>gi|148925615|ref|ZP_01809303.1| putative nucleotide-sugar epimerase/dehydratase [Campylobacter
jejuni subsp. jejuni CG8486]
gi|145845625|gb|EDK22716.1| putative nucleotide-sugar epimerase/dehydratase [Campylobacter
jejuni subsp. jejuni CG8486]
Length = 181
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 76/170 (44%), Gaps = 21/170 (12%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL---GLQ---DVFVQDNHSFSFDCGTIRGLHFQ 59
V I+ KF D RG ++S+ + +L GL+ D F+ H+ IRG+H
Sbjct: 16 VYIITPNKFRDLRGEIWTAFTSEAIDKLLPNGLKFIHDKFIHSKHN------VIRGIHGD 69
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Y KL C+ G + + VD R++SPTY I+ +N I +P GF +
Sbjct: 70 VKTY---KLATCVYGEVHQVVVDCRKDSPTYLKHERFIINQDNQQIILVPAGFGNAHYVS 126
Query: 120 EMNTEVIYKVTDF--YSVEHDS-GVAWQDKSIDITWPLLDTILPSVSEKD 166
+ YK Y HD AW D+ I I WP T P +SE+D
Sbjct: 127 SESAVYYYKCAYLGEYMDAHDQFTYAWNDERIGIDWP---TNSPILSERD 173
>gi|242310053|ref|ZP_04809208.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Helicobacter pullorum MIT
98-5489]
gi|239523350|gb|EEQ63216.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Helicobacter pullorum MIT
98-5489]
Length = 185
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 18/163 (11%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL------GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
V I+ KF+D RG ++S+ + +L + D F+ H+ IRG+H
Sbjct: 16 VYIITPNKFQDLRGEIWTAFTSEAIDKLLPNNLQFIHDKFIHSKHN------VIRGIHGD 69
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Y KL C+ G I + VD R++SPTY + I+ N I +P+GF +
Sbjct: 70 HKTY---KLATCVYGEIHQVVVDCRKDSPTYLKYEKFIINQENQQIILVPSGFGNAHYVS 126
Query: 120 EMNTEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTIL 159
+ YK + AW D I I WP + IL
Sbjct: 127 SDSAVYYYKCAYKGSYVDANEQFTFAWNDPRIGIDWPTNNPIL 169
>gi|326486489|gb|ADZ76315.1| putative nucleotide-sugar epimerase/dehydratase [Campylobacter
jejuni subsp. jejuni]
Length = 181
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 70/167 (41%), Gaps = 9/167 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+N V I+ KF D RG ++ + L L + + + + +RG+H
Sbjct: 13 LNGVYIITPNKFSDLRGDIWTAFTDEYLSNLVPNGIKFKHDKFINSHFNVLRGIHGDVKT 72
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y KLV C+ G + + VD R++SPTY W IS N I +P +
Sbjct: 73 Y---KLVTCVYGEVHQVVVDCRKDSPTYLKWEKFIISPRNQQLILLPPNMGNSHYVSSKE 129
Query: 123 TEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK+ ++ AW DK I I WP T P +SE+D
Sbjct: 130 AVYYYKLAYKGEYLDAPDQFTYAWNDKRIAIDWP---TNSPILSERD 173
>gi|40388619|gb|AAR85524.1| RmlC [Thermoanaerobacterium thermosaccharolyticum]
Length = 83
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + I++T FED+RG+F +TY+ K GL VFVQDN S S G +RGLHFQ+
Sbjct: 10 DIEGLYIIETGIFEDNRGYFMETYNYNDFK-AGLDMVFVQDNQSKS-KKGVLRGLHFQK- 66
Query: 62 PYAQAKLVRCIAGRIFD 78
+ Q KLVR I G +FD
Sbjct: 67 KHPQGKLVRVIKGEVFD 83
>gi|48474180|dbj|BAD22650.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus mitis]
Length = 197
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G EI A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNVYQTEIDASKG--IFVPRGVANGFQVLSDTVAYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYADPALGIEWENLEAA--EVSEADKHHPLLKDV 189
>gi|3907611|gb|AAC78675.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase Cps19aM [Streptococcus
pneumoniae]
gi|68643373|emb|CAI33635.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
Length = 198
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAAGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G EI A+ G I++P G A+GF L Y V
Sbjct: 87 ADDGKVLGSWVDLREGE-TFGNVYQTEIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W + VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIEWE--NIAEAEVSEADKNHPLLKDV 189
>gi|325695966|gb|EGD37857.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK160]
gi|332367029|gb|EGJ44769.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK1059]
Length = 203
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 37 DNRGWFKENFQKEKMLPLGFSESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 92
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 93 ADDGKVLGTWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 149
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D+N P L +
Sbjct: 150 DYWALELKPKYAFVNYADPALGIQWENLEAA--EVSEADKNHPLLKDV 195
>gi|324994660|gb|EGC26573.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK678]
gi|327474886|gb|EGF20291.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK408]
gi|327490012|gb|EGF21801.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK1058]
gi|328946485|gb|EGG40625.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK1087]
Length = 203
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 37 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 92
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 93 ADDGKVLGTWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDKVSYSYLVN 149
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D+N P L +
Sbjct: 150 DYWALELKPKYAFVNYADPALGIQWENLEAA--EVSEADKNHPLLKDV 195
>gi|77411729|ref|ZP_00788067.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus agalactiae
CJB111]
gi|77162237|gb|EAO73210.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus agalactiae
CJB111]
Length = 197
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SF+ T+RGLH + P+ + +
Sbjct: 31 DNRGWFKENFQKEKMIPLGFPESFFEADKLQNNISFN-KKNTLRGLHAE--PWDKYVSI- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
GR+ VD+R ++G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADEGRVIGTWVDLREGD-SFGNVYQTIIDASKG--IFVPRGVANGFQVLSDKAAYTYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADSNLGIQWENLEEA--EVSEADKNHPLLKDV 189
>gi|322392751|ref|ZP_08066210.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus peroris ATCC
700780]
gi|321144389|gb|EFX39791.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus peroris ATCC
700780]
Length = 197
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFRDGKLQNNISFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGAWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E S V + D ++ I W L VSE D+N P L +
Sbjct: 144 DYWALELKSKYVFVNYADPALGIEWENLAE--AEVSEADKNHPLLKDV 189
>gi|325687674|gb|EGD29695.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis SK72]
gi|327461219|gb|EGF07552.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK1057]
gi|332359734|gb|EGJ37551.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK355]
Length = 203
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 37 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 92
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 93 ADDGKVLGTWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 149
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D+N P L +
Sbjct: 150 DYWALELKPKYAFVNYADPALGIQWENLEAA--EVSEADKNHPLLKDV 195
>gi|305679681|ref|ZP_07402491.1| putative dTDP-4-dehydrorhamnose reductase [Corynebacterium
matruchotii ATCC 14266]
gi|305660301|gb|EFM49798.1| putative dTDP-4-dehydrorhamnose reductase [Corynebacterium
matruchotii ATCC 14266]
Length = 482
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 17/165 (10%)
Query: 16 DSRGWFSQTYSSKL------LKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLV 69
D+RGWF + + + L + + VQ+N SF+ G RGLH + P+ K V
Sbjct: 4 DNRGWFKENWQREKIAAIPELSQACREFRPVQNNISFNAQPGVTRGLHAE--PWN--KFV 59
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKV 129
G +F + D+R +SPT+G S I+ +++P G A+GF LE + Y V
Sbjct: 60 TIAQGEVFGVWCDLRADSPTFGKVFSTRITTEQA--VFVPRGVANGFQALEPSI-YTYLV 116
Query: 130 TDFYSVE-HDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFL 172
+S + H S V D ++ I WP+ LD +S D+ P L
Sbjct: 117 DAHWSPQAHYSHVNLADPALGICWPIPLDKA--EISAADRTHPLL 159
>gi|328478993|gb|EGF48485.1| dTDP-glucose 4,6-dehydratase [Lactobacillus rhamnosus MTCC 5462]
Length = 359
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 102 NGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS 161
N Q+ +P GFAHGF+TL N +YKV +Y+ E D G+A+ D I I WP+ L
Sbjct: 2 NHRQLLVPKGFAHGFITLTPNVNFVYKVEGYYAPEADRGIAFDDPDIGIDWPMSTAHL-I 60
Query: 162 VSEKDQNLPFL 172
+SEKDQ+ P L
Sbjct: 61 MSEKDQHHPQL 71
>gi|322385642|ref|ZP_08059286.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus cristatus ATCC
51100]
gi|321270380|gb|EFX53296.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus cristatus ATCC
51100]
Length = 203
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 37 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 92
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I+A+ G I++P G A+GF L Y V
Sbjct: 93 ADDGKVLGSWVDLREGE-TFGNTYQTVIAASKG--IFVPRGVANGFQVLSDTVSYSYLVN 149
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D+N P L +
Sbjct: 150 DYWALELKPKYAFVNYADPALGIQWENLEAA--EVSEADKNHPLLKDV 195
>gi|22537357|ref|NP_688208.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus agalactiae
2603V/R]
gi|76786998|ref|YP_329899.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus agalactiae
A909]
gi|77405406|ref|ZP_00782500.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus agalactiae
H36B]
gi|22534229|gb|AAN00081.1|AE014246_16 dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus agalactiae
2603V/R]
gi|76562055|gb|ABA44639.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus agalactiae
A909]
gi|77175988|gb|EAO78763.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus agalactiae
H36B]
gi|319745224|gb|EFV97543.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus agalactiae ATCC
13813]
Length = 197
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SF+ T+RGLH + P+ + +
Sbjct: 31 DNRGWFKENFQKEKMIPLGFPESFFEADKLQNNISFN-KKNTLRGLHAE--PWDKYVSI- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
GR+ VD+R ++G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADEGRVIGTWVDLREGD-SFGNVYQTIIDASKG--IFVPRGVANGFQVLSDKAAYTYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPNLGIQWENLEEA--EVSEADKNHPLLKDV 189
>gi|256371350|ref|YP_003109174.1| dTDP-4-dehydrorhamnose 35-epimerase related [Acidimicrobium
ferrooxidans DSM 10331]
gi|256007934|gb|ACU53501.1| dTDP-4-dehydrorhamnose 35-epimerase related [Acidimicrobium
ferrooxidans DSM 10331]
Length = 180
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 80/174 (45%), Gaps = 11/174 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +++ D+RG F +TY LG + VQ + S G++ G+H+
Sbjct: 5 EIADVIVIRPTVHADARGAFQETYRRSWFP-LGRE--MVQGSRSDKV-AGSLVGMHYH-- 58
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
QA + G + D R S T G SL + + + ++IP G AHGF L
Sbjct: 59 -LHQADYWYVVRGTAQVLLYDFRHGSRTEGTTWSLLMGDEDPIGLFIPPGVAHGFAAL-T 116
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + Y V +Y+ + + G+ W D + W L D P +SE+DQ P + Q+
Sbjct: 117 DLTLTYLVDGYYNPDDELGLRWNDPTFHGLWQLDD---PVISERDQTNPLIAQV 167
>gi|77412812|ref|ZP_00789017.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus agalactiae 515]
gi|77161108|gb|EAO72214.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus agalactiae 515]
Length = 197
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SF+ T+RGLH + P+ + +
Sbjct: 31 DNRGWFKENFQKEKMIPLGFPESFFEADKLQNNISFN-KKNTLRGLHAE--PWDKYVSI- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
GR+ VD+R ++G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADEGRVIGTWVDLREGD-SFGNVYQTIIDASKG--IFVPRGVANGFQVLSDKAAYTYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPNLGIQWENLEEA--EVSEADKNHPLLKDV 189
>gi|324991645|gb|EGC23578.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK353]
Length = 203
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 37 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 92
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 93 ADDGKVLGTWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 149
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D+N P L +
Sbjct: 150 DYWALELKPKYAFVNYADPALGIQWENLEAA--EVSEADKNHPLLKDV 195
>gi|76798347|ref|ZP_00780591.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus agalactiae
18RS21]
gi|76586298|gb|EAO62812.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus agalactiae
18RS21]
Length = 197
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SF+ T+RGLH + P+ + +
Sbjct: 31 DNRGWFKENFQKEKMIPLGFPESFFEADKLQNNISFN-KKNTLRGLHAE--PWDKYVSI- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
GR+ VD+R ++G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADEGRVIGTWVDLREGD-SFGNVYQTIIDASKG--IFVPRGVANGFQVLSDKAAYTYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPNLGIQWENLEEA--EVSEADKNHPLLKDV 189
>gi|325694720|gb|EGD36626.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK150]
Length = 203
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 37 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 92
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 93 ADDGKVLGTWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 149
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D+N P L +
Sbjct: 150 DYWALELKPKYAFVNYADPALGIQWENLEAA--EVSEADKNHPLLKDV 195
>gi|125718224|ref|YP_001035357.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus sanguinis
SK36]
gi|125498141|gb|ABN44807.1| DTDP-4-keto-6-deoxyglucose-3,5-epimerase, putative [Streptococcus
sanguinis SK36]
Length = 197
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADDGKVLGTWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPALGIQWENLEAA--EVSEADKNHPLLKDV 189
>gi|86152037|ref|ZP_01070250.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Campylobacter jejuni
subsp. jejuni 260.94]
gi|315124864|ref|YP_004066868.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
gi|56783464|emb|CAI38717.1| putative nucleotidyl-sugar epimerase [Campylobacter jejuni]
gi|85841145|gb|EAQ58394.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Campylobacter jejuni
subsp. jejuni 260.94]
gi|315018586|gb|ADT66679.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
Length = 181
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 74/170 (43%), Gaps = 21/170 (12%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL---GLQ---DVFVQDNHSFSFDCGTIRGLHFQ 59
V I+ KF D RG ++ + + +L GL+ D F+ H+ IRG+H
Sbjct: 16 VYIITPNKFRDLRGEIWTAFTDEAINKLLPSGLKFIHDKFIHSKHN------VIRGIHGD 69
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Y KL C+ G I + VD R++SPTY I+ +N I +P GF +
Sbjct: 70 VKTY---KLATCVYGEIHQVVVDCRKDSPTYLKHERFIINQDNQQIILVPAGFGNAHYVS 126
Query: 120 EMNTEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ YK D+ AW D+ I I WP T P +SE+D
Sbjct: 127 SESAVYYYKCAYKGDYADAPDQFTYAWNDERIGIDWP---TNSPILSERD 173
>gi|25011321|ref|NP_735716.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus agalactiae
NEM316]
gi|77407798|ref|ZP_00784551.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus agalactiae
COH1]
gi|24412859|emb|CAD46931.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus agalactiae
NEM316]
gi|77173545|gb|EAO76661.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus agalactiae
COH1]
Length = 197
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SF+ T+RGLH + P+ + +
Sbjct: 31 DNRGWFKENFQKEKMIPLGFPESFFEADKLQNNISFN-KKNTLRGLHAE--PWDKYVSI- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
GR+ VD+R ++G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADEGRVIGTWVDLREGD-SFGNVYQTIIDASKG--IFVPRGVANGFQVLSDKAAYTYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPNLGIQWENLEEA--EVSEADKNHPLLKDV 189
>gi|68643513|emb|CAI33749.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
Length = 198
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMVPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G EI A+ G I++P G A+GF L Y V
Sbjct: 87 ADNGKVLGTWVDLREGE-TFGNIYQTEIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D + I W L+ VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYSDPELGIEWENLEE--AEVSEADKHHPLLKDV 189
>gi|225020236|ref|ZP_03709428.1| hypothetical protein CORMATOL_00239 [Corynebacterium matruchotii
ATCC 33806]
gi|224946980|gb|EEG28189.1| hypothetical protein CORMATOL_00239 [Corynebacterium matruchotii
ATCC 33806]
Length = 505
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 15/164 (9%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF------VQDNHSFSFDCGTIRGLHFQRPPYAQAKLV 69
D+RGWF + + + + + VQ+N SF+ G RGLH + P+ K V
Sbjct: 27 DNRGWFKENWQREKIAAIPELSRACREFRPVQNNISFNAQPGVTRGLHAE--PWN--KFV 82
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKV 129
G +F + D+R +SPT+G S I+ +++P G A+GF LE +
Sbjct: 83 TIAQGEVFGVWCDLRADSPTFGKVFSTRITTEQA--VFVPRGVANGFQALEPSIYTYLVD 140
Query: 130 TDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQNLPFL 172
+ H S V D ++ I WP+ LD +S D+ P L
Sbjct: 141 AHWSPQAHYSHVNLADPALGICWPIPLDKA--EISAADRTHPLL 182
>gi|327470793|gb|EGF16249.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK330]
Length = 203
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 37 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 92
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 93 ADDGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 149
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D+N P L +
Sbjct: 150 DYWALELKPKYAFVNYADPALGIQWENLEAA--EVSEADKNHPLLKDV 195
>gi|323351360|ref|ZP_08087016.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
VMC66]
gi|322122584|gb|EFX94295.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
VMC66]
Length = 203
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 37 DNRGWFKENFQKEKMLPLGFPESFYAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 92
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 93 ADDGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 149
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D+N P L +
Sbjct: 150 DYWALELKPKYAFVNYADPALGIQWENLEAA--EVSEADKNHPLLKDV 195
>gi|332360987|gb|EGJ38791.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK1056]
Length = 203
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 37 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 92
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 93 ADDGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 149
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D+N P L +
Sbjct: 150 DYWALELKPKYAFVNYADPALGIQWENLEAA--EVSEADKNHPLLKDV 195
>gi|332362097|gb|EGJ39899.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis SK49]
Length = 203
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 37 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 92
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 93 ADDGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 149
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D+N P L +
Sbjct: 150 DYWALELKPKYAFVNYADPALGIQWENLEAA--EVSEADKNHPLLKDV 195
>gi|157150920|ref|YP_001450299.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus gordonii
str. Challis substr. CH1]
gi|157075714|gb|ABV10397.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus gordonii
str. Challis substr. CH1]
Length = 197
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFVEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADDGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPALGIQWENLEAA--EVSEADKNHPLLKDV 189
>gi|225870742|ref|YP_002746689.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus equi subsp.
equi 4047]
gi|225700146|emb|CAW94280.1| putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
equi subsp. equi 4047]
Length = 199
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 32 DNRGWFKENFQKEKMIPLGFPEQFFAAGKLQNNISFSRKH-VLRGLHAE--PWDKYISV- 87
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R ++G I A+ G I++P G A+GF L Y V
Sbjct: 88 ADEGKVLGAWVDLREGD-SFGHTYQTVIDASKG--IFVPRGVANGFQVLTDKVAYTYLVN 144
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W L+ VSE D++ PFL +
Sbjct: 145 DYWALELKQKYAFVNYADPSLGIAWESLEQ--AEVSEADKSHPFLEAV 190
>gi|326692662|ref|ZP_08229667.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leuconostoc argentinum KCTC
3773]
Length = 197
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG F +Q+N SFS G +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMVPLGFPASFFAEGKLQNNVSFS-RQGVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R ++G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADNGKVLGAWVDLRAGE-SFGHVYQTVIDASKG--IFVPRGVANGFQVLSETVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W D VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPTLGIEW--ADVAHAEVSEADKNHPLLKDV 189
>gi|325690527|gb|EGD32530.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK115]
Length = 203
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 37 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 92
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 93 ADDGKVLGSWVDLREGD-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 149
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D+N P L +
Sbjct: 150 DYWALELKPKYAFVNYADPALGIQWENLEAA--EVSEADKNHPLLKDV 195
>gi|262282423|ref|ZP_06060191.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus sp.
2_1_36FAA]
gi|262261714|gb|EEY80412.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus sp.
2_1_36FAA]
Length = 192
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADDGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPALGIQWENLEAA--EVSEADKNHPLLKDV 189
>gi|28849788|gb|AAN64545.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus gordonii]
Length = 197
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADDGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPALGIQWENLEAA--EVSEADKNHPLLKDV 189
>gi|270293359|ref|ZP_06199568.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
sp. M143]
gi|270278208|gb|EFA24056.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
sp. M143]
Length = 198
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G EI A+ G I++P G A+GF L Y V
Sbjct: 87 ADNGKVLGSWVDLREGE-TFGNVYQTEIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D + I W L+ VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYSDPELGIEWENLEEA--EVSEADKHHPLLKDV 189
>gi|183602162|ref|ZP_02963530.1| possible fused dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase enzyme involved
[Bifidobacterium animalis subsp. lactis HN019]
gi|219683072|ref|YP_002469455.1| dTDP-4-dehydrorhamnose reductase [Bifidobacterium animalis subsp.
lactis AD011]
gi|241191394|ref|YP_002968788.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|241196800|ref|YP_002970355.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|183218655|gb|EDT89298.1| possible fused dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase enzyme involved
[Bifidobacterium animalis subsp. lactis HN019]
gi|219620722|gb|ACL28879.1| dTDP-4-dehydrorhamnose reductase [Bifidobacterium animalis subsp.
lactis AD011]
gi|240249786|gb|ACS46726.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|240251354|gb|ACS48293.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|289177519|gb|ADC84765.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bifidobacterium animalis
subsp. lactis BB-12]
gi|295794387|gb|ADG33922.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bifidobacterium animalis
subsp. lactis V9]
Length = 483
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 15/163 (9%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
D+RGWF + + + LGL F VQ+N SF+ G RG+H + P+ K +
Sbjct: 27 DNRGWFKENWQKAKMTALGLPKDFQPVQNNVSFNAKRGVTRGIHAE--PWD--KFISLAT 82
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G IF VD+R T+G + + + IY+P G + F LE T Y V +
Sbjct: 83 GEIFGAWVDLRPGD-TFGQVYTTRLDPSKA--IYVPRGVGNSFQALEDGTAYTYLVNAHW 139
Query: 134 SVEHDSG---VAWQDKSIDITWPL-LDTILPSVSEKDQNLPFL 172
S+E V D ++I WP+ L+ +SE D + P L
Sbjct: 140 SLEQKKTYTFVNLADPELNIQWPIPLEQA--ELSEADLHHPML 180
>gi|307707842|ref|ZP_07644319.1| dTDP-4-dehydrorhamnose 3,5-epimerase subfamily, putative
[Streptococcus mitis NCTC 12261]
gi|307616102|gb|EFN95298.1| dTDP-4-dehydrorhamnose 3,5-epimerase subfamily, putative
[Streptococcus mitis NCTC 12261]
Length = 450
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 16/158 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
D RG+F + + K L G+ + F +Q+N S S G IRG+H Q KL+
Sbjct: 24 DERGYFLENWRKKDLLANGVPESFFHHKLQNNVSVS-KQGVIRGMHCQ----GYEKLMTV 78
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
G I +D+R +SPTY +++ G +++P G A+G +L N + Y V D
Sbjct: 79 AYGTFKMIFIDLRIDSPTYKSVDVIDVQP--GRAVFVPGGVANGAQSLVNNGILNYLVAD 136
Query: 132 FYSVEHDS-GVAWQDKSIDITWPLLDTIL-PSVSEKDQ 167
+Y + G+ DK +++W D++L P +SEKDQ
Sbjct: 137 YYDPHKNYLGITPLDKDANLSW---DSLLKPIISEKDQ 171
>gi|332522280|ref|ZP_08398532.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus
porcinus str. Jelinkova 176]
gi|332313544|gb|EGJ26529.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus
porcinus str. Jelinkova 176]
Length = 198
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMIPLGFPESFFTEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R+ ++G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADQGKVLGTWVDLRQGD-SFGHVYQTIIDASKG--IFVPRGVANGFQVLSETVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W L+ VS+ D+N P+L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIQWENLEAA--EVSDADKNHPYLKDV 189
>gi|121310080|dbj|BAF44345.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus oralis]
Length = 197
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G EI A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNVYQTEIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYADPALGIQWENLAEA--EVSEADKHHPLLKDV 189
>gi|48474158|dbj|BAD22629.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus oralis]
Length = 197
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G EI A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNVYQTEIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYADPALGIQWENLAEA--EVSEADKHHPLLKDV 189
>gi|326486386|gb|ADZ76217.1| putative nucleotide-sugar epimerase/dehydratase [Campylobacter
jejuni subsp. jejuni]
Length = 181
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 21/170 (12%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL---GLQ---DVFVQDNHSFSFDCGTIRGLHFQ 59
V I+ KF D RG ++S+ + +L GL+ D F+ H+ IRG+H
Sbjct: 16 VYIITPNKFRDLRGEIWTAFTSEAVDKLLPNGLKFIHDKFIHSKHN------VIRGIHGD 69
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Y KL C+ G + + VD R++SPTY I+ +N I +P GF +
Sbjct: 70 VKTY---KLATCVYGEVHQVVVDCRKDSPTYLKHERFIINQDNQKIILVPAGFGNAHYVS 126
Query: 120 EMNTEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK ++ AW D+ I I WP T P +SE+D
Sbjct: 127 SETAVYYYKCAYLGEYMDAPDQFTYAWNDERIGIDWP---TNSPILSERD 173
>gi|293364790|ref|ZP_06611507.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus oralis ATCC
35037]
gi|307703039|ref|ZP_07639986.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus oralis ATCC
35037]
gi|291316240|gb|EFE56676.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus oralis ATCC
35037]
gi|307623432|gb|EFO02422.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus oralis ATCC
35037]
Length = 197
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G EI A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNVYQTEIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYADPALGIQWENLAE--AEVSEADKHHPLLKDV 189
>gi|225868323|ref|YP_002744271.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus equi subsp.
zooepidemicus]
gi|225701599|emb|CAW98850.1| putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
equi subsp. zooepidemicus]
Length = 199
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 32 DNRGWFKENFQKEKMIPLGFPEQFFAAGKLQNNISFSRKH-VLRGLHAE--PWDKYISV- 87
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R ++G I A+ G I++P G A+GF L Y V
Sbjct: 88 ADEGKVLGAWVDLREGD-SFGHTYQTVIDASKG--IFVPRGVANGFQVLTDKVAYTYLVN 144
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W L+ VSE D++ PFL +
Sbjct: 145 DYWALELKPKYAFVNYADPSLGIAWENLEQA--EVSEADKSHPFLEAV 190
>gi|149006111|ref|ZP_01829840.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Streptococcus
pneumoniae SP18-BS74]
gi|307126573|ref|YP_003878604.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
670-6B]
gi|18376692|gb|AAL68416.1|AF246897_13 dTDP 4-keto 6-deoxyglucose 3,5-epimerase [Streptococcus pneumoniae]
gi|147762467|gb|EDK69428.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Streptococcus
pneumoniae SP18-BS74]
gi|306483635|gb|ADM90504.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
670-6B]
gi|332076800|gb|EGI87262.1| dTDP-4-dehydrorhamnose 3,5-epimerase family protein [Streptococcus
pneumoniae GA17545]
Length = 198
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + ++ LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMEPLGFPESFFAAGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADDGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W + VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIEWE--NIAEAEVSEADKNHPLLKDV 189
>gi|19705020|ref|NP_602515.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|296329269|ref|ZP_06871770.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
gi|19712930|gb|AAL93814.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|296153625|gb|EFG94442.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
Length = 82
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Query: 106 IYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS---- 161
++IP FAHGF+TLE NTE+ YK +FY++++++G+ W D+ ++I W +
Sbjct: 2 LFIPKSFAHGFLTLEDNTEIFYKCDNFYNLQNEAGIIWNDRDLNIDWNFKKYNINENELI 61
Query: 162 VSEKDQ-NLPF 171
+SEKD+ N+ F
Sbjct: 62 ISEKDKRNISF 72
>gi|322374910|ref|ZP_08049424.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
sp. C300]
gi|321280410|gb|EFX57449.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
sp. C300]
Length = 197
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G EI A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNVYQTEIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYADPALGIQWENLAE--AEVSEADKHHPLLKDV 189
>gi|324994020|gb|EGC25939.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK405]
Length = 203
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 37 DNRGWFKENFQKEKMLPLGFPESFFVEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 92
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 93 ADDGKVLGTWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDIVSYSYLVN 149
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D+N P L +
Sbjct: 150 DYWALELKPKYAFVNYADPALGIQWENLEAA--EVSEADKNHPLLKDV 195
>gi|309802229|ref|ZP_07696337.1| putative dTDP-4-dehydrorhamnose reductase [Bifidobacterium dentium
JCVIHMP022]
gi|308221112|gb|EFO77416.1| putative dTDP-4-dehydrorhamnose reductase [Bifidobacterium dentium
JCVIHMP022]
Length = 482
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + ELGL D VQ+N SF+ G RG+H + P+ K + G
Sbjct: 27 DNRGWFKENWQRAKMLELGLPDFGPVQNNISFNAKKGVTRGIHAE--PW--DKYISIATG 82
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
IF VD+R ++G + + + IY+P G + F LE T Y V +S
Sbjct: 83 EIFGAWVDLRPGE-SFGQVYTTRLDPSKA--IYVPRGVGNSFQALEDGTAYTYLVNAHWS 139
Query: 135 VEHDSG---VAWQDKSIDITWPL 154
+E V D ++I WP+
Sbjct: 140 LEQKKTYTFVNLADPELNIQWPI 162
>gi|2804709|gb|AAC38694.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus pneumoniae]
Length = 197
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W + VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIEWE--NIAEAEVSEADKNHPLLKDV 189
>gi|306822149|ref|ZP_07455531.1| dTDP-4-dehydrorhamnose reductase [Bifidobacterium dentium ATCC
27679]
gi|304554531|gb|EFM42436.1| dTDP-4-dehydrorhamnose reductase [Bifidobacterium dentium ATCC
27679]
Length = 485
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + ELGL D VQ+N SF+ G RG+H + P+ K + G
Sbjct: 30 DNRGWFKENWQRAKMLELGLPDFGPVQNNISFNAKKGVTRGIHAE--PW--DKYISIATG 85
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
IF VD+R ++G + + + IY+P G + F LE T Y V +S
Sbjct: 86 EIFGAWVDLRPGE-SFGQVYTTRLDPSKA--IYVPRGVGNSFQALEDGTAYTYLVNAHWS 142
Query: 135 VEHDSG---VAWQDKSIDITWPL 154
+E V D ++I WP+
Sbjct: 143 LEQKKTYTFVNLADPELNIQWPI 165
>gi|313890169|ref|ZP_07823804.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus
pseudoporcinus SPIN 20026]
gi|313121530|gb|EFR44634.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus
pseudoporcinus SPIN 20026]
Length = 198
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMIPLGFPESFFTAGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R+ ++G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADQGKVLGTWVDLRQGD-SFGHIYQTIIDASKG--IFVPRGVANGFQVLSETVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D+++++ A + D S+ I W L+ VS+ D+N PFL +
Sbjct: 144 DYWALDLKPKYAFVNYADPSLGIQWENLEAA--EVSDADKNHPFLKDV 189
>gi|307710513|ref|ZP_07646950.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus mitis SK564]
gi|307618776|gb|EFN97915.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus mitis SK564]
Length = 197
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFSRKQ-VLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W L VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIEWENLAEA--EVSEADKNHPLLKDV 189
>gi|159232422|emb|CAM96606.1| probable NDP-hexose epimerase [Streptomyces ambofaciens]
Length = 206
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
D RG F + L+ V V+ H +RGLH P QAK++ C+
Sbjct: 19 LPDHRGRFYEAVRRGPLEAAVGHSVEVRQVHCTVSGRNVLRGLHATTLPPGQAKILTCVR 78
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G + VD+R SP +G + ++ A +G +Y+P G G++ L +T + Y T+ Y
Sbjct: 79 GAALTMVVDMRVGSPGFGRYEAVRQDAPSGTALYLPDGIGLGYVALADDTCMNYLCTEEY 138
Query: 134 SVEHDSGVAWQDKSIDITWPL 154
V D + + W L
Sbjct: 139 VPGMVIDVDALDPELGLPWGL 159
>gi|18376704|gb|AAL68427.1| dTDP 4-keto 6-deoxyglucose 3,5-epimerase [Streptococcus pneumoniae]
gi|68643747|emb|CAI33949.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|149929318|gb|ABR37232.1| RmlC [Streptococcus pneumoniae]
gi|312176762|gb|ADQ39189.1| RmlC [Streptococcus pneumoniae]
Length = 198
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W + VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIEWE--NIAEAEVSEADKNHPLLKDV 189
>gi|326486339|gb|ADZ76172.1| putative nucleotide-sugar epimerase/dehydratase [Campylobacter
jejuni subsp. jejuni]
gi|326486363|gb|ADZ76195.1| putative nucleotide-sugar epimerase/dehydratase [Campylobacter
jejuni subsp. jejuni]
Length = 181
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 21/170 (12%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL---GLQ---DVFVQDNHSFSFDCGTIRGLHFQ 59
V I+ KF D RG ++S+ + +L GL+ D F+ H+ IRG+H
Sbjct: 16 VYIITPNKFRDLRGEIWTAFTSEAVDKLLPNGLKFIHDKFIHSKHN------VIRGIHGD 69
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Y KL C+ G + + VD R++SPTY I+ +N I +P GF +
Sbjct: 70 VKTY---KLATCVYGEVHQVVVDCRKDSPTYLKHERFIINQDNQKIILVPAGFGNAHYVS 126
Query: 120 EMNTEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK ++ AW D+ I I WP T P +SE+D
Sbjct: 127 SETAVYYYKCAYLGEYMDAPDQFTYAWNDERIGIDWP---TNNPILSERD 173
>gi|306827472|ref|ZP_07460756.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes ATCC
10782]
gi|304430352|gb|EFM33377.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes ATCC
10782]
Length = 197
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + +G + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPIGFPECFFEEGKLQNNVSFSRQH-VLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G+ ++P G A+GF L Y V
Sbjct: 87 ADDGKVLGAWVDLREGE-TFGNVYQTVIDASKGM--FVPRGVANGFQVLSETVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D+++++ A + D S+ ITW L VSE D+N P L+ +
Sbjct: 144 DYWALDLKPKYAFVNYADPSLGITWENLAAA--EVSEADKNHPLLSDV 189
>gi|171742181|ref|ZP_02917988.1| hypothetical protein BIFDEN_01287 [Bifidobacterium dentium ATCC
27678]
gi|171277795|gb|EDT45456.1| hypothetical protein BIFDEN_01287 [Bifidobacterium dentium ATCC
27678]
Length = 485
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + ELGL D VQ+N SF+ G RG+H + P+ K + G
Sbjct: 30 DNRGWFKENWQRAKMLELGLPDFGPVQNNISFNAKKGVTRGIHAE--PW--DKYISIATG 85
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
IF VD+R ++G + + + IY+P G + F LE T Y V +S
Sbjct: 86 EIFGAWVDLRPGE-SFGQVYTTRLDPSKA--IYVPRGVGNSFQALEDGTAYTYLVNAHWS 142
Query: 135 VEHDSG---VAWQDKSIDITWPL 154
+E V D ++I WP+
Sbjct: 143 LEQKKTYTFVNLADPELNIPWPI 165
>gi|68643965|emb|CAI34132.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643995|emb|CAI34158.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
Length = 198
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGKTYQTVIDASKG--IFVPRGVANGFQVLSDTASYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W L+ VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIEWENLEEA--DVSEADKHHPLLKDV 189
>gi|68644633|emb|CAI34684.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
Length = 197
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTASYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W L+ VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIEWENLEEA--DVSEADKHHPLLKDV 189
>gi|148988116|ref|ZP_01819579.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Streptococcus
pneumoniae SP6-BS73]
gi|13377431|gb|AAK20692.1|AF316640_12 RmlC [Streptococcus pneumoniae]
gi|68642408|emb|CAI32826.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643603|emb|CAI33826.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643631|emb|CAI33849.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643659|emb|CAI33871.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643687|emb|CAI33896.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68644530|emb|CAI34597.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|147926580|gb|EDK77653.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Streptococcus
pneumoniae SP6-BS73]
Length = 197
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W + VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIEWE--NIAEAEVSEADKNHPLLKDV 189
>gi|116618517|ref|YP_818888.1| dTDP-4-dehydrorhamnose 3,5-epimerase related enzyme [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|116097364|gb|ABJ62515.1| dTDP-4-dehydrorhamnose 3,5-epimerase related enzyme [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 197
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N S S G +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFKEDKLQNNVSLS-RKGVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
GR+ VD+R ++G I A+ G IY+P G A+GF L Y V
Sbjct: 87 ADNGRVLGSWVDLREGD-SFGHVYQTVIDASKG--IYVPRGVANGFQVLSETVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D+++++ A + D ++ I W D VSE D+N P L +
Sbjct: 144 DYWALDLKPKYAFVNYADPALGIEW--YDVENAEVSEADKNHPLLKDV 189
>gi|221231237|ref|YP_002510389.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase RmlC [Streptococcus
pneumoniae ATCC 700669]
gi|2804722|gb|AAC38705.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus pneumoniae]
gi|2804728|gb|AAC38710.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus pneumoniae]
gi|3320400|gb|AAC38758.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus pneumoniae]
gi|220673697|emb|CAR68190.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase RmlC [Streptococcus
pneumoniae ATCC 700669]
Length = 197
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W + VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIEWE--NIAEAEVSEADKNHPLLKDV 189
>gi|5902168|gb|AAD55452.1| dTDP-4-keto-6-deoxyglucose 3,5-epimerase [Streptomyces
antibioticus]
Length = 204
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 2/161 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++++ + D RG F + + + +E +G Q N S S
Sbjct: 4 LDVDGAWLYTPEIMRDERGEFLEWFRGRTFQEKIGHPLSLAQANCSVSRKAFCAASTS-P 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
PP QAK V C +G + D+ VD+RR SPT+G W ++ + A +Y+ G H FM L
Sbjct: 63 TPPPGQAKYVTCASGTVLDVVVDVRRGSPTFGRWAAVRLDAARHQGLYLAEGLGHAFMAL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILP 160
+ V+Y + Y E + V D +I I WP I+P
Sbjct: 123 TDDATVVYLCSQPYVAEAERAVDPLDPAIGIEWPTDIDIVP 163
>gi|227431063|ref|ZP_03913123.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|227353183|gb|EEJ43349.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
Length = 197
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG F +Q+N S S G +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMMPLGFPASFFKADKLQNNVSLS-RQGVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
GR+ VD+R ++G I A+ G IY+P G A+GF L Y V
Sbjct: 87 ADNGRVLGSWVDLREGD-SFGHVYQTVIDASKG--IYVPRGVANGFQVLSETVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D+++++ A + D ++ I W D VSE D+N P L +
Sbjct: 144 DYWALDLKPKYAFVNYADPALGIEWA--DVAHAEVSEADKNHPLLKDV 189
>gi|320546508|ref|ZP_08040823.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus equinus ATCC
9812]
gi|320448893|gb|EFW89621.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus equinus ATCC
9812]
Length = 198
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 18/177 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFSHK-NVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R ++G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADEGKVLGSWVDLREGE-SFGHVYQTVIDASKG--IFVPRGVANGFQVLSDKVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGL 184
D++++E A + D ++ I W L+ VSE D+N P L + P D L
Sbjct: 144 DYWALELKPKYAFVNYADPTLGIKWENLEEA--EVSEADKNHPLLKDV-KPLSKDDL 197
>gi|15674954|ref|NP_269128.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes M1
GAS]
gi|19745996|ref|NP_607132.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS8232]
gi|21910183|ref|NP_664451.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS315]
gi|28896117|ref|NP_802467.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes SSI-1]
gi|50914107|ref|YP_060079.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS10394]
gi|71903380|ref|YP_280183.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS6180]
gi|71910548|ref|YP_282098.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS5005]
gi|94988424|ref|YP_596525.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS9429]
gi|94990303|ref|YP_598403.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS10270]
gi|94994225|ref|YP_602323.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS10750]
gi|139473906|ref|YP_001128622.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes str.
Manfredo]
gi|81372133|sp|Q5XCG7|RMLC_STRP6 RecName: Full=Probable dTDP-4-dehydrorhamnose 3,5-epimerase;
AltName: Full=Thymidine diphospho-4-keto-rhamnose
3,5-epimerase; AltName: Full=dTDP-4-keto-6-deoxyglucose
3,5-epimerase; AltName:
Full=dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase;
AltName: Full=dTDP-L-rhamnose synthase
gi|13622099|gb|AAK33849.1| putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
pyogenes M1 GAS]
gi|19748159|gb|AAL97631.1| putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
pyogenes MGAS8232]
gi|21904376|gb|AAM79254.1| putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
pyogenes MGAS315]
gi|28811367|dbj|BAC64300.1| putative dTDP-4-keto-6-deoxyglucose-3,5- epimerase [Streptococcus
pyogenes SSI-1]
gi|50903181|gb|AAT86896.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS10394]
gi|71802475|gb|AAX71828.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS6180]
gi|71853330|gb|AAZ51353.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS5005]
gi|94541932|gb|ABF31981.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS9429]
gi|94543811|gb|ABF33859.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS10270]
gi|94547733|gb|ABF37779.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS10750]
gi|134272153|emb|CAM30398.1| putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
pyogenes str. Manfredo]
gi|323127496|gb|ADX24793.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
Length = 197
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + +G + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPIGFPERFFEEGKLQNNVSFSRQH-VLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G+ ++P G A+GF L Y V
Sbjct: 87 ADDGKVLGAWVDLREGE-TFGNVYQTVIDASKGM--FVPRGVANGFQVLSETVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D+++++ A + D S+ ITW L VSE D+N P L+ +
Sbjct: 144 DYWALDLKPKYAFVNYADPSLGITWENLAAA--EVSEADKNHPLLSDV 189
>gi|171779671|ref|ZP_02920627.1| hypothetical protein STRINF_01508 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281773|gb|EDT47207.1| hypothetical protein STRINF_01508 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 198
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 18/177 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFSHK-NVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R ++G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADEGKVLGSWVDLREGD-SFGHVYQTVIDASKG--IFVPRGVANGFQVLSDKVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGL 184
D++++E A + D ++ I W L+ VSE D+N P L + P D L
Sbjct: 144 DYWALELKPKYAFVNYADPTLGIKWENLEEA--EVSEADKNHPLLKDV-KPLSKDDL 197
>gi|209559281|ref|YP_002285753.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes NZ131]
gi|209540482|gb|ACI61058.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes NZ131]
Length = 197
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + +G + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPIGFPERFFEEGKLQNNVSFSRQH-VLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G+ ++P G A+GF L Y V
Sbjct: 87 ADDGKVLGAWVDLREGE-TFGNVYQTVIDASKGM--FVPRGVANGFQVLSETVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D+++++ A + D S+ ITW L VSE D+N P L+ +
Sbjct: 144 DYWALDLKPKYAFVNYADPSLGITWENLAAA--EVSEADKNHPLLSDV 189
>gi|251782676|ref|YP_002996979.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
gi|242391306|dbj|BAH81765.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
Length = 197
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + +G + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPIGFPERFFEEGKLQNNVSFSRQH-VLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G+ ++P G A+GF L Y V
Sbjct: 87 ADDGKVLGAWVDLREGE-TFGNVYQTVIDASKGM--FVPRGVANGFQVLSETVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D+++++ A + D S+ ITW L VSE D+N P L+ +
Sbjct: 144 DYWALDLKPKYAFVNYADPSLGITWENLAAA--EVSEADKNHPLLSDV 189
>gi|288905035|ref|YP_003430257.1| dTDP 4-keto 6-deoxyglucose 3,5-epimerase [Streptococcus
gallolyticus UCN34]
gi|306831108|ref|ZP_07464269.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|325978004|ref|YP_004287720.1| dTDP-4-keto-L-rhamnose reductase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|288731761|emb|CBI13322.1| putative dTDP 4-keto 6-deoxyglucose 3,5-epimerase [Streptococcus
gallolyticus UCN34]
gi|304426674|gb|EFM29785.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|325177932|emb|CBZ47976.1| dTDP-4-keto-L-rhamnose reductase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 197
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMVPLGFPESFFAEGKLQNNVSFSHK-NVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R ++G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADEGKVLGSWVDLREGD-SFGHVYQTVIDASKG--IFVPRGVANGFQVLSDKVAYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPTLGIKWENLEAA--EVSEADKNHPLLKDV 189
>gi|4406250|gb|AAD19914.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus pneumoniae]
Length = 197
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAAGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G EI A+ G I++P G A+GF L Y V
Sbjct: 87 ADDGKVLGSWVDLREGE-TFGNVYQTEIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYADPALGIEWENLPEA--EVSEADKHHPLLRDV 189
>gi|168494599|ref|ZP_02718742.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
CDC3059-06]
gi|169833448|ref|YP_001693877.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
Hungary19A-6]
gi|298255292|ref|ZP_06978878.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae str.
Canada MDR_19A]
gi|298502160|ref|YP_003724100.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
TCH8431/19A]
gi|168995950|gb|ACA36562.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
Hungary19A-6]
gi|183575494|gb|EDT96022.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
CDC3059-06]
gi|298237755|gb|ADI68886.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
TCH8431/19A]
gi|332203522|gb|EGJ17589.1| dTDP-4-dehydrorhamnose 3,5-epimerase family protein [Streptococcus
pneumoniae GA47368]
Length = 197
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAAGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G EI A+ G I++P G A+GF L Y V
Sbjct: 87 ADDGKVLGSWVDLREGE-TFGNVYQTEIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYADPALGIEWENLAEA--EVSEADKHHPLLRDV 189
>gi|225856102|ref|YP_002737613.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
P1031]
gi|1944621|emb|CAB05931.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae]
gi|68642281|emb|CAI32711.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|125857153|emb|CAI30306.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|225724625|gb|ACO20477.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
P1031]
gi|301793615|emb|CBW35995.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae INV104]
gi|332204382|gb|EGJ18447.1| dTDP-4-dehydrorhamnose 3,5-epimerase family protein [Streptococcus
pneumoniae GA47901]
Length = 198
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKVLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W L+ VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIEWENLEEA--DVSEADKHHPLLKDV 189
>gi|56807813|ref|ZP_00365660.1| COG1898: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Streptococcus pyogenes M49 591]
Length = 197
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + +G + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPIGFPERFFEEGKLQNNVSFSRQH-VLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G+ ++P G A+GF L Y V
Sbjct: 87 ADDGKVLGAWVDLREGE-TFGNVYQTVIDASKGM--FVPRGVANGFQVLSETVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D+++++ A + D S+ ITW L VSE D+N P L+ +
Sbjct: 144 DYWALDLKPKYAFVNYADPSLGITWENLAAA--EVSEADKNHPLLSDL 189
>gi|310286574|ref|YP_003937832.1| dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose
reductase [Bifidobacterium bifidum S17]
gi|309250510|gb|ADO52258.1| dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose
reductase [Bifidobacterium bifidum S17]
Length = 482
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 11/143 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + LGL D VQ+N SF+ G RG+H + P+ K + G
Sbjct: 27 DNRGWFKENWQRAKMTALGLPDFGPVQNNISFNAKKGVTRGIHAE--PWD--KYISIATG 82
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+F VD+R ++G + + + IY+P G + F LE T Y V +S
Sbjct: 83 AVFGAWVDLRPGE-SFGQVYTTRLDPSKA--IYVPRGVGNSFQALEDGTAYTYLVNAHWS 139
Query: 135 VEHDSG---VAWQDKSIDITWPL 154
+E V D +DI WP+
Sbjct: 140 LEQKKTYTFVNLADPELDIQWPI 162
>gi|306833215|ref|ZP_07466344.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus bovis ATCC
700338]
gi|304424582|gb|EFM27719.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus bovis ATCC
700338]
Length = 197
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMIPLGFPESFFAEGKLQNNVSFSHK-NVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R ++G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADEGKVLGSWVDLREGD-SFGHVYQTVIDASKG--IFVPRGVANGFQVLSDKVAYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L+ VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPTLGIKWENLEAA--EVSEADKNHPLLKDV 189
>gi|260584910|ref|ZP_05852654.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Granulicatella elegans
ATCC 700633]
gi|260157340|gb|EEW92412.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Granulicatella elegans
ATCC 700633]
Length = 449
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 20/172 (11%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
D RG+F + + L + G+ + F +Q+N S S GTIRG+H Q AKL+
Sbjct: 24 DERGYFVENWRKIDLLKYGVPESFFQEKLQNNVSVS-KKGTIRGMHCQ----GWAKLMTV 78
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
+G +D+R +SPTY +++ G+ I++P G ++G L + Y VT
Sbjct: 79 ASGTFRMCFIDLRLSSPTYKAVDVIDVVP--GMAIFVPAGVSNGAQALTDKGILNYLVTG 136
Query: 132 FY--SVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN----LPFLNQIDS 177
+Y SV+H SG+ D+++++ W + ++ +S KDQ L + +I+S
Sbjct: 137 YYDLSVKH-SGIMPLDQTLNLPWDVTGEVI--ISSKDQQSDSYLSIIQKIES 185
>gi|224284002|ref|ZP_03647324.1| fused dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase enzyme involved
[Bifidobacterium bifidum NCIMB 41171]
gi|313141153|ref|ZP_07803346.1| dTDP-4-dehydrorhamnose reductase [Bifidobacterium bifidum NCIMB
41171]
gi|313133663|gb|EFR51280.1| dTDP-4-dehydrorhamnose reductase [Bifidobacterium bifidum NCIMB
41171]
Length = 482
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 11/143 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + LGL D VQ+N SF+ G RG+H + P+ K + G
Sbjct: 27 DNRGWFKENWQRAKMTALGLPDFGPVQNNISFNAKKGVTRGIHAE--PWD--KYISIATG 82
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+F VD+R ++G + + + IY+P G + F LE T Y V +S
Sbjct: 83 AVFGAWVDLRPGE-SFGQVYTTRLDPSKA--IYVPRGVGNSFQALEDGTAYTYLVNAHWS 139
Query: 135 VEHDSG---VAWQDKSIDITWPL 154
+E V D +DI WP+
Sbjct: 140 LEQKKTYTFVNLADPELDIQWPI 162
>gi|15902365|ref|NP_357915.1| hypothetical protein spr0321 [Streptococcus pneumoniae R6]
gi|116517185|ref|YP_815844.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Streptococcus
pneumoniae D39]
gi|4200434|gb|AAD10182.1| Cps2M [Streptococcus pneumoniae D39]
gi|15457876|gb|AAK99125.1| The type 2 capsule locus of Streptococcus pneumoniae [Streptococcus
pneumoniae R6]
gi|68642308|emb|CAI32733.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|116077761|gb|ABJ55481.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Streptococcus
pneumoniae D39]
Length = 197
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + ++ LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMEPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNTYQTIIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W + VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIEWE--NIAEAEVSEADKHHPLLKDV 189
>gi|225352522|ref|ZP_03743545.1| hypothetical protein BIFPSEUDO_04145 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225156716|gb|EEG70110.1| hypothetical protein BIFPSEUDO_04145 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 473
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 14/162 (8%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + LGL D VQ+N SF+ G RG+H + P+ K + G
Sbjct: 27 DNRGWFKENWQRAKMTALGLPDFGPVQNNISFNAKKGVTRGIHAE--PWD--KYISIATG 82
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+F VD+R ++G + + + IY+P G + F LE T Y V +S
Sbjct: 83 SVFGAWVDLRPGE-SFGQVYTTVLDPSKA--IYVPRGVGNSFQALEDGTAYTYLVNAHWS 139
Query: 135 VEHDSG---VAWQDKSIDITWPL-LDTILPSVSEKDQNLPFL 172
+E V D +DI WP+ LD SE D P L
Sbjct: 140 LEQKKTYTFVNLADPDLDIQWPIPLDEA--ERSEADLKHPML 179
>gi|86150038|ref|ZP_01068266.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88596400|ref|ZP_01099637.1| putative nucleotide-sugar epimerase/dehydratase [Campylobacter
jejuni subsp. jejuni 84-25]
gi|218563034|ref|YP_002344813.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni
subsp. jejuni NCTC 11168]
gi|85839484|gb|EAQ56745.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88191241|gb|EAQ95213.1| putative nucleotide-sugar epimerase/dehydratase [Campylobacter
jejuni subsp. jejuni 84-25]
gi|112360740|emb|CAL35539.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni
subsp. jejuni NCTC 11168]
gi|315928031|gb|EFV07350.1| dTDP-4-dehydrorhamnose 3,5-epimerase family protein [Campylobacter
jejuni subsp. jejuni DFVF1099]
gi|315928953|gb|EFV08204.1| dTDP-4-dehydrorhamnose 3,5-epimerase family protein [Campylobacter
jejuni subsp. jejuni 305]
Length = 181
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 9/164 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I+ KF D RG ++ + L +L + + + + +RG+H Y
Sbjct: 16 VYIITPNKFRDLRGEIWTAFTDEYLSKLVPDGIKFKHDKFINSHFNVLRGIHGDVKTY-- 73
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV C+ G + + VD R++SPTY W IS N I +P +
Sbjct: 74 -KLVTCVYGEVHQVVVDCRKDSPTYLKWEKFIISYKNQQLILLPPNMGNSHYVSSKEAVY 132
Query: 126 IYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK+ ++ AW D+ I I WP T P +S++D
Sbjct: 133 YYKLAYEGEYMDAPDQFTYAWNDERIGIDWP---TNTPILSDRD 173
>gi|118588742|ref|ZP_01546150.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stappia aggregata IAM 12614]
gi|118438728|gb|EAV45361.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stappia aggregata IAM 12614]
Length = 188
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 12/168 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++ Y L + +Q N S + T+RG+H + Y + +AGR
Sbjct: 31 DERGSFTEIYRETWLTDFK----SIQWNIVTSRE-DTLRGVHVHKDHY---DYLMILAGR 82
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+ DIRR+SPT+G L+++ + + IP G HGF E +T +Y V+ ++
Sbjct: 83 MLLGLHDIRRDSPTFGTSEILDLTDEHRRAVSIPPGVCHGFYYPEASTH-LYSVSTYFDP 141
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
D G + +++ WP D P +S++D+ Q+ F D
Sbjct: 142 RDDLGCKFDCPELNLAWPTKD---PVLSDRDRTADSYAQMLDKFYLDA 186
>gi|125623084|ref|YP_001031567.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Lactococcus lactis subsp.
cremoris MG1363]
gi|27462666|gb|AAO15543.1|AF458777_2 RfbC [Lactococcus lactis subsp. cremoris MG1363]
gi|124491892|emb|CAL96813.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Lactococcus lactis subsp.
cremoris MG1363]
gi|300069832|gb|ADJ59232.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 197
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 18/177 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMMPLGFPESFFAEEKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G + VD+R +G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGSVLGAWVDLREGE-NFGHVYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGL 184
D++++E A + D ++ I W D VSE D+N P L + P + D L
Sbjct: 144 DYWALELKPKYAFVNYADPTLGIKWE--DVENAEVSEADKNHPMLKDV-KPLKADEL 197
>gi|297162849|gb|ADI12561.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces bingchenggensis
BCW-1]
Length = 147
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPT 110
G IRG+HF P QAK + C +G + D+ VD+R SPT+G W ++++ + +++
Sbjct: 14 GAIRGIHFADVPPGQAKYITCASGAVRDVVVDLRVGSPTFGRWETVDLDDQSRQALFLTE 73
Query: 111 GFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITW-----PLL---DTILPSV 162
G H L ++Y + Y E + + D + I W P+L DT+ P+V
Sbjct: 74 GIGHAVQGLTEEATIVYMCSAGYVAERERAIHPLDPDLGIDWIPGVEPILSAKDTVAPTV 133
Query: 163 SEKDQ 167
+E +
Sbjct: 134 AEAQE 138
>gi|6002931|gb|AAF00208.1|AF164960_4 epimerase [Streptomyces fradiae]
Length = 202
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M+I ++ + D RG F + L + +G+ Q N+S S T+RG+H
Sbjct: 1 MSIPGAFLITPDQLSDERGAFYELRCDMLERAVGVPFQPQQINYSVSKR-HTLRGIHSVS 59
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIP 109
P QAKLV C+ G + DI VD+R SP +G E+ A +G +Y+P
Sbjct: 60 IPPGQAKLVTCVRGALRDIVVDLRIGSPAFGAHQVTELDAVSGRSVYVP 108
>gi|225860393|ref|YP_002741902.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
Taiwan19F-14]
gi|298229716|ref|ZP_06963397.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae str.
Canada MDR_19F]
gi|225726502|gb|ACO22353.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
Taiwan19F-14]
gi|327390775|gb|EGE89115.1| dTDP-4-dehydrorhamnose 3,5-epimerase family protein [Streptococcus
pneumoniae GA04375]
Length = 198
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W + VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIEWE--NIAEAEVSEADKHHPLLKDV 189
>gi|5305795|gb|AAD41825.1|AF147704_5 NDP-hexose 3,5- (or5-) epimerase TylCVII [Streptomyces fradiae]
Length = 197
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFV-QDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D RG ++ + L+ + + Q NH+ + T+RG+H P Q K+V C+ G
Sbjct: 21 DHRGSLYESLRYETLRRATGHAIEIRQVNHTVNRR-NTLRGIHGTTVPPGQGKIVTCVRG 79
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+ VD+R SPT+G + A +G+ +Y+P G G++ L +T + Y T Y+
Sbjct: 80 AARTMVVDLRVGSPTFGGHDVVGQDAESGVAVYLPDGLGLGYVALADDTCMNYLYTREYT 139
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ D + + W L + P SE+D
Sbjct: 140 PGMIIDIDALDPGLGLPWNLTEP--PVRSERD 169
>gi|332077647|gb|EGI88108.1| dTDP-4-dehydrorhamnose 3,5-epimerase family protein [Streptococcus
pneumoniae GA41301]
Length = 197
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W + VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIKWE--NIAEAEVSEADKHHPLLKDV 189
>gi|68642514|emb|CAI32914.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643402|emb|CAI33658.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
Length = 198
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W + VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIEWE--NIAEAEVSEADKHHPLLKDV 189
>gi|149012102|ref|ZP_01833211.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Streptococcus
pneumoniae SP19-BS75]
gi|194397415|ref|YP_002037041.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase RmlC [Streptococcus
pneumoniae G54]
gi|1881545|gb|AAC44970.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus pneumoniae]
gi|2804690|gb|AAC38678.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus pneumoniae]
gi|2804696|gb|AAC38683.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus pneumoniae]
gi|2804703|gb|AAC38689.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus pneumoniae]
gi|2804715|gb|AAC38699.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus pneumoniae]
gi|68643459|emb|CAI33704.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68644416|emb|CAI34505.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|147763704|gb|EDK70638.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Streptococcus
pneumoniae SP19-BS75]
gi|194357082|gb|ACF55530.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase rmlC [Streptococcus
pneumoniae G54]
Length = 198
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W + VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIEWE--NIAEAEVSEADKHHPLLKDV 189
>gi|307708206|ref|ZP_07644673.1| RmlC [Streptococcus mitis NCTC 12261]
gi|307615652|gb|EFN94858.1| RmlC [Streptococcus mitis NCTC 12261]
Length = 197
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPEYFFTEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D+++++ A + D + I W L VSE D+N P L +
Sbjct: 144 DYWALDLKPKYAFVNYADPELGIEWANLAEA--EVSEADKNHPLLKDV 189
>gi|68643432|emb|CAI33683.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
Length = 197
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W + VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIEWE--NIAEAEVSEADKHHPLLKDV 189
>gi|149018053|ref|ZP_01834512.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Streptococcus
pneumoniae SP23-BS72]
gi|168482595|ref|ZP_02707547.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
CDC1873-00]
gi|168485501|ref|ZP_02710009.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
CDC1087-00]
gi|168486647|ref|ZP_02711155.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
CDC1087-00]
gi|168487599|ref|ZP_02712107.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
CDC1087-00]
gi|3818497|gb|AAC69539.1| Cps23fP [Streptococcus pneumoniae]
gi|68642460|emb|CAI32870.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68642542|emb|CAI32938.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643148|emb|CAI33448.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643178|emb|CAI33472.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643237|emb|CAI33519.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643265|emb|CAI33543.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643349|emb|CAI33616.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643545|emb|CAI33779.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643575|emb|CAI33803.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643824|emb|CAI34015.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643935|emb|CAI34106.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68644387|emb|CAI34482.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|147931617|gb|EDK82595.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Streptococcus
pneumoniae SP23-BS72]
gi|172043815|gb|EDT51861.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
CDC1873-00]
gi|183569609|gb|EDT90137.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
CDC1087-00]
gi|183570376|gb|EDT90904.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
CDC1087-00]
gi|183571251|gb|EDT91779.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
CDC1087-00]
Length = 197
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W + VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIEWE--NIAEAEVSEADKHHPLLKDV 189
>gi|15672178|ref|NP_266352.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Lactococcus lactis subsp.
lactis Il1403]
gi|116511026|ref|YP_808242.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Lactococcus lactis subsp.
cremoris SK11]
gi|12723050|gb|AAK04294.1|AE006257_4 dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Lactococcus lactis subsp.
lactis Il1403]
gi|116106680|gb|ABJ71820.1| dTDP-4-dehydrorhamnose 3,5-epimerase related enzyme [Lactococcus
lactis subsp. cremoris SK11]
Length = 197
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMMPLGFPESFFAEEKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G + VD+R +G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGSVLGAWVDLREGE-NFGHVYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
D++++E A + D ++ I W D VSE D+N P L + +
Sbjct: 144 DYWALELKPKYAFVNYADPTLGIKWE--DVENAEVSEADKNHPLLKDVKA 191
>gi|227546956|ref|ZP_03977005.1| fused dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase enzyme involved
in rhamnose biosynthesis [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|227212557|gb|EEI80445.1| fused dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase enzyme involved
in rhamnose biosynthesis [Bifidobacterium longum subsp.
infantis ATCC 55813]
Length = 476
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 16/163 (9%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + LGL D VQ+N SF+ G RG+H + P+ K + G
Sbjct: 29 DNRGWFKENWQRAKMTALGLPDFGPVQNNISFNAKKGVTRGIHAE--PWD--KYISIATG 84
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
IF VD+R ++G + + + IY+P G + F L+ T Y V +S
Sbjct: 85 EIFGAWVDLRPGD-SFGQVFTTRLDPSKA--IYVPRGVGNSFQALQDGTAYTYLVNAHWS 141
Query: 135 VEHDSG---VAWQDKSIDITW--PLLDTILPSVSEKDQNLPFL 172
+E V D ++I W PL+D+ SE D + P L
Sbjct: 142 LEQKKTYTFVNLADPELNIQWPIPLVDS---ERSEADLHHPML 181
>gi|281490685|ref|YP_003352665.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactococcus lactis subsp.
lactis KF147]
gi|281374454|gb|ADA63975.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactococcus lactis subsp.
lactis KF147]
Length = 197
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 17/170 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMMPLGFPESFFAEEKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G + VD+R +G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGSVLGAWVDLREGE-NFGHVYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
D++++E A + D ++ I W ++ VSE D+N P L + +
Sbjct: 144 DYWALELKPKYAFVNYADPTLGIKWENVEN--AEVSEADKNHPLLKDVKA 191
>gi|328471513|gb|EGF42401.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus MTCC
5462]
Length = 181
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 22/161 (13%)
Query: 3 INPVRILKTRKFEDSRG----WFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHF 58
I+ ++I+ + D RG F Q+ S++L + + Q N + + G +RGLH
Sbjct: 15 IDGLKIIHVKMVTDERGTVRELFRQSQHSQVLVNPNM--AWKQVNLTRT-KRGAVRGLHG 71
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
+ A +KLV G F VD RR+SPT G V++ ++ G+Q+++P G +GF
Sbjct: 72 E----AMSKLVTVAHGEAFGAYVDTRRDSPTLGSVVTVRLTP--GVQVFVPQGVCNGFQA 125
Query: 119 LEMNTEVIYKVTDFYSVEHD---SGVAWQ--DKSIDITWPL 154
+ +TE +Y F+ E +GVA D + I WP+
Sbjct: 126 VADDTEYLY----FFDNEWQKGMTGVALTPLDPDLGIEWPI 162
>gi|312864883|ref|ZP_07725114.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus downei
F0415]
gi|311100010|gb|EFQ58223.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus downei
F0415]
Length = 197
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAGGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R ++G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADEGKVLGSWVDLREGE-SFGHTYQTIIDASKG--IFVPRGVANGFQVLSDKVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L VSE D+N P L +
Sbjct: 144 DYWALELKPKYAFVNYADPALGIEWENLAEA--EVSEADKNHPMLKDV 189
>gi|1813346|dbj|BAA11248.1| dTDP-4-keto-L-rhamnose reductase [Streptococcus mutans]
Length = 198
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 32 DNRGWFKENFQKEKMVPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 87
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R ++G I A+ G I++P G A+GF L Y V
Sbjct: 88 ADEGKVLGSWVDLREGD-SFGHVYQAVIDASKG--IFVPRGVANGFQVLSDKVSYSYLVN 144
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L VSE D+N P L +
Sbjct: 145 DYWALELKPKYAFVNYADPTLGIEWENLAEA--QVSEADKNHPLLKDV 190
>gi|13377463|gb|AAK20722.1|AF316642_16 RmlC [Streptococcus pneumoniae]
gi|68643291|emb|CAI33567.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643320|emb|CAI33591.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
Length = 197
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S I W + VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSFGIEWE--NIAEAEVSEADKHHPLLKDV 189
>gi|290580173|ref|YP_003484565.1| dTDP-4-keto-L-rhamnose reductase [Streptococcus mutans NN2025]
gi|254997072|dbj|BAH87673.1| dTDP-4-keto-L-rhamnose reductase [Streptococcus mutans NN2025]
Length = 198
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 32 DNRGWFKENFQKEKMVPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 87
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R ++G I A+ G I++P G A+GF L Y V
Sbjct: 88 ADEGKVLGSWVDLREGD-SFGHVYQTVIDASKG--IFVPRGVANGFQVLSDKVSYSYLVN 144
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D ++ I W L VSE D+N P L +
Sbjct: 145 DYWALELKPKYAFVNYADPTLGIEWENLAEA--QVSEADKNHPLLKDV 190
>gi|312133747|ref|YP_004001086.1| rfbc [Bifidobacterium longum subsp. longum BBMN68]
gi|311773025|gb|ADQ02513.1| RfbC [Bifidobacterium longum subsp. longum BBMN68]
Length = 475
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + +LGL D VQ+N SF+ G RG+H + P+ K + G
Sbjct: 29 DNRGWFKENWQRAKMLKLGLPDFGPVQNNISFNATKGVTRGIHAE--PWD--KYISIATG 84
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
IF VD+R ++G + + + IY+P G + F LE T Y V +S
Sbjct: 85 EIFGAWVDLRPGE-SFGQVFTTRLDPSRA--IYVPRGVGNSFQALEDGTAYTYLVNAHWS 141
Query: 135 VEHDSG---VAWQDKSIDITWPL 154
+E V D ++I WP+
Sbjct: 142 LEQKKTYTFVNLADPELNIQWPI 164
>gi|311063528|ref|YP_003970253.1| RmlC/RmlD dTDP-4-dehydrorhamnose
3,5-epimerase/dTDP-4-dehydrorhamnose reductase
[Bifidobacterium bifidum PRL2010]
gi|310865847|gb|ADP35216.1| RmlC/RmlD dTDP-4-dehydrorhamnose
3,5-epimerase/dTDP-4-dehydrorhamnose reductase
[Bifidobacterium bifidum PRL2010]
Length = 476
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 11/143 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + LGL D VQ+N SF+ G RG+H + P+ K + G
Sbjct: 29 DNRGWFKENWQRAKMTALGLPDFGPVQNNISFNAKKGVTRGIHAE--PWD--KFISIATG 84
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
IF VD+R ++G + + + IY+P G + F L+ T Y V +S
Sbjct: 85 EIFGAWVDLRPGD-SFGQVFTTRLDPSKA--IYVPRGVGNSFQALQDGTAYTYLVNAHWS 141
Query: 135 VEHDSG---VAWQDKSIDITWPL 154
+E V D ++I WP+
Sbjct: 142 LEQKKTYTFVNLADPELNIQWPI 164
>gi|322691989|ref|YP_004221559.1| dTDP-4-dehydrorhamnose
reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Bifidobacterium longum subsp. longum JCM 1217]
gi|320456845|dbj|BAJ67467.1| dTDP-4-dehydrorhamnose
reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Bifidobacterium longum subsp. longum JCM 1217]
Length = 484
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 11/143 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + LGL D VQ+N SF+ G RG+H + P+ K + AG
Sbjct: 29 DNRGWFKENWQRAKMTALGLPDFGPVQNNISFNATKGVTRGIHAE--PW--DKYISIAAG 84
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
IF VD+R ++G + + + IY+P G + F L+ T Y V +S
Sbjct: 85 EIFGAWVDLRPGE-SFGQVYTTRLDPSKA--IYVPRGVGNSFQALQDGTVYTYLVNAHWS 141
Query: 135 VEHDSG---VAWQDKSIDITWPL 154
+E V D + I WP+
Sbjct: 142 LEQKKTYTFVNLADPELGIEWPI 164
>gi|326405772|gb|ADZ62843.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactococcus lactis subsp.
lactis CV56]
Length = 197
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMMPLGFPKSFFAEEKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G + VD+R ++G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGSVLGSWVDLREGE-SFGNVYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
D++++E A + D ++ I W D VSE D+N P L + +
Sbjct: 144 DYWALELKPKYAFVNYADPTLGIKWE--DVENAEVSEADKNHPLLKDVKA 191
>gi|117926764|ref|YP_867381.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Magnetococcus sp.
MC-1]
gi|117610520|gb|ABK45975.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein [Magnetococcus
sp. MC-1]
Length = 172
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 55/102 (53%)
Query: 52 TIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTG 111
T+RGL Q+ P AQ L+ + G ++ + +D+RRNS ++ W +E+ A+ + IP G
Sbjct: 50 TLRGLRVQQAPAAQTLLLTPLTGMVWIMVLDLRRNSHSFCHWYGVEMQASAAQSLCIPPG 109
Query: 112 FAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP 153
AHGF+TL +T ++ + G+ W D + WP
Sbjct: 110 CAHGFLTLAADTLLLSMASVKDEPLLQRGIRWDDAQFGMAWP 151
>gi|295856706|gb|ADG46994.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bifidobacterium longum subsp.
longum]
Length = 483
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 11/143 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + LGL D VQ+N SF+ G RG+H + P+ K + AG
Sbjct: 29 DNRGWFKENWQRAKMTALGLPDFGPVQNNISFNATKGVTRGIHAE--PW--DKYISIAAG 84
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
IF VD+R ++G + + + IY+P G + F L+ T Y V +S
Sbjct: 85 EIFGAWVDLRPGE-SFGQVFTTRLDPSKA--IYVPRGVGNSFQALQDGTVYTYLVNAHWS 141
Query: 135 VEHDSG---VAWQDKSIDITWPL 154
+E V D + I WP+
Sbjct: 142 LEQKKTYTFVNLADPELGIEWPI 164
>gi|302335388|ref|YP_003800595.1| dTDP-4-dehydrorhamnose reductase [Olsenella uli DSM 7084]
gi|301319228|gb|ADK67715.1| dTDP-4-dehydrorhamnose reductase [Olsenella uli DSM 7084]
Length = 481
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 13/182 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRP 61
I +R+ D RGWF + + + GL D VQ+N SF+ G RG+H +
Sbjct: 14 IAGLRVFDLCVHGDDRGWFKENWQQAKMSSCGLPDFHPVQNNISFNAQRGVTRGIHAE-- 71
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K + +G IF + VD+R +G S I + +++P G + F LE
Sbjct: 72 PW--DKYISVASGSIFGVWVDLRAGE-GFGRVFSCRIDPSKA--VFVPRGVGNAFQALED 126
Query: 122 NTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
T Y V +S E V D+ + I WP+ + +S+ D++ P L + SP
Sbjct: 127 GTVYTYLVNAHWSQELKESYTFVNLADEQLAIEWPIPLSEC-ELSQADRDHPALRDV-SP 184
Query: 179 FE 180
+
Sbjct: 185 MQ 186
>gi|154488287|ref|ZP_02029404.1| hypothetical protein BIFADO_01861 [Bifidobacterium adolescentis
L2-32]
gi|154083438|gb|EDN82483.1| hypothetical protein BIFADO_01861 [Bifidobacterium adolescentis
L2-32]
Length = 483
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 11/143 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + LGL D VQ+N SF+ G RG+H + P+ K + AG
Sbjct: 30 DNRGWFKENWQRAKQTALGLPDFGPVQNNISFNAKKGVTRGIHAE--PWD--KYISIAAG 85
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+F VD+R + ++ + IY+P G + F LE T Y V +S
Sbjct: 86 SVFGAWVDLRPGDSFGQVYTTI---LDPSKAIYVPRGVGNSFQALEDGTVYTYLVNAHWS 142
Query: 135 VEHDSG---VAWQDKSIDITWPL 154
+E V D +DI WP+
Sbjct: 143 LEQKKTYTFVNLADPELDIQWPI 165
>gi|89994596|emb|CAI34065.2| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
Length = 202
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 18/171 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLL---DTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W + + VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIEWENIAEAEVSEAEVSEADKHHPLLKDV 194
>gi|68643855|emb|CAI34040.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
Length = 197
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W + VSE D+ P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIEWE--NIAEAEVSEADKYHPLLKDV 189
>gi|68642431|emb|CAI32846.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
Length = 198
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W + VSE D+N L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIEWE--NIAEAEVSEADKNHSLLKDV 189
>gi|329117726|ref|ZP_08246443.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus
parauberis NCFD 2020]
gi|326908131|gb|EGE55045.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus
parauberis NCFD 2020]
Length = 197
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFDEGKLQNNVSFSRKH-VLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R ++G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADDGKVLGSWVDLREGE-SFGNVYQTVIDASKG--IFVPRGVANGFQVLSDKVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D+++++ A + D ++ I W LD VS+ D+N P L +
Sbjct: 144 DYWALDLKPKYAFVNYADPTLGIKWENLDQA--EVSDADKNHPMLKDV 189
>gi|68643208|emb|CAI33496.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
Length = 198
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPASFFTEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W + VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIEWE--NIAEAEVSEADKHHPLLKDV 189
>gi|68642487|emb|CAI32893.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68644360|emb|CAI34458.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
Length = 198
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPASFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W + VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIEWE--NIAEAEVSEADKHHPLLKDV 189
>gi|2804684|gb|AAC38673.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus pneumoniae]
Length = 198
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVQGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W + VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIEWE--NIAEAEVSEADKHHPLLKDV 189
>gi|170017546|ref|YP_001728465.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leuconostoc citreum KM20]
gi|169804403|gb|ACA83021.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leuconostoc citreum KM20]
Length = 197
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQ-DVF----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG D F +Q+N S S G +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMVPLGFPIDFFAADKLQNNVSLS-RQGVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R ++G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADNGKVLGAWVDLREGE-SFGHVYQTVIDASKG--IFVPRGVANGFQVLSETVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D+++++ A + D ++ I W +D VSE D+N P L +
Sbjct: 144 DYWALDLKPKYAFVNYADPTLGIAWDDVDN--AEVSEADKNHPMLKDV 189
>gi|283955038|ref|ZP_06372545.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni
subsp. jejuni 414]
gi|283793536|gb|EFC32298.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni
subsp. jejuni 414]
Length = 181
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 9/164 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I+ KF D RG ++ + L +L + + + + +RG+H Y
Sbjct: 16 VYIITPNKFRDLRGEIWTAFTDEHLSKLVPDGIKFKHDKFINSHFNVLRGIHGDVKTY-- 73
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV C+ G + + VD R++S TY W IS N I +P +
Sbjct: 74 -KLVTCVYGEVHQVVVDCRKDSSTYLKWEKFIISHKNQQLILLPPNMGNSHYVSSKEAVY 132
Query: 126 IYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK+ ++ AW D+ I I WP T P +SE+D
Sbjct: 133 YYKLAYEGEYMDAPDQFTYAWNDERIGIDWP---TNTPILSERD 173
>gi|84683922|ref|ZP_01011824.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Maritimibacter alkaliphilus
HTCC2654]
gi|84667675|gb|EAQ14143.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacterales bacterium
HTCC2654]
Length = 193
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 12/158 (7%)
Query: 16 DSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D RG+F +T+ L+ E+G VF Q NHS S T+RG F+ P+ +A V G
Sbjct: 35 DERGFFVETFRQSLIASEMGRPYVFAQSNHSRSV-ARTLRG--FRTEPWDKAIYV--TRG 89
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNG--LQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
+ VD R +SPTY + I G +I + G A+ F L + + + V++
Sbjct: 90 TALVVVVDPRPDSPTYREHETFLIGDAPGDRHRIVVSRGLANAFYCL-TDVDYVNDVSEE 148
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
Y G W + I WP DT P +S+ D NLP
Sbjct: 149 YRPTGRRGFHWSAPGLGIDWP--DTT-PILSDADANLP 183
>gi|308235687|ref|ZP_07666424.1| fused dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase enzyme involved
[Gardnerella vaginalis ATCC 14018]
gi|311114284|ref|YP_003985505.1| bifunctional dTDP-4-keto-L-rhamnose
reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Gardnerella vaginalis ATCC 14019]
gi|310945778|gb|ADP38482.1| fused dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase enzyme involved
in rhamnose biosynthesis [Gardnerella vaginalis ATCC
14019]
Length = 480
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + LGL D VQ+N SF+ G RG+H + P+ K + G
Sbjct: 27 DNRGWFKENWQRAKMTALGLPDFGPVQNNISFNEKRGVTRGIHAE--PWD--KYISIATG 82
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+F VD+R P + N IY+P G + F L+ T Y V +S
Sbjct: 83 EVFGAWVDLR---PGKSFGQVYTTTLNPSKAIYVPRGVGNSFQALQDGTAYTYLVNAHWS 139
Query: 135 VEHDSG---VAWQDKSIDITWPL 154
+E V D + I WP+
Sbjct: 140 LEQKKTYTFVNLADPDLHINWPI 162
>gi|22255843|gb|AAM94768.1| CalS1 [Micromonospora echinospora]
Length = 190
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 2/163 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
++ + D RG F + Y + + + +G Q N S S G IRG+H P Q
Sbjct: 13 LVTPEQHHDDRGLFLEWYQADRFTEAVGRPFRVAQSNVSVSGR-GVIRGIHLVDVPPGQD 71
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
K + C++G + D+ VD+R SPT+G W + + + +++ G H F L V+
Sbjct: 72 KYITCVSGAVLDVVVDLRVGSPTFGRWEGVRLDDVDRRAVHLDAGLGHAFCALTEPATVV 131
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
Y + Y + V D + I WP L QN+
Sbjct: 132 YLCSSPYDPAAERTVNPLDPELGIAWPAGPRRLSPRDATAQNV 174
>gi|317482611|ref|ZP_07941626.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bifidobacterium sp.
12_1_47BFAA]
gi|316916033|gb|EFV37440.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bifidobacterium sp.
12_1_47BFAA]
Length = 362
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 11/143 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + LGL D VQ+N SF+ G RG+H + P+ K + AG
Sbjct: 29 DNRGWFKENWQRAKMMGLGLPDFGPVQNNISFNATKGVTRGIHAE--PWD--KYISIAAG 84
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
IF VD+R ++G + + + IY+P G + F L+ T Y V +S
Sbjct: 85 EIFGAWVDLRPGE-SFGQVFTTRLDPSKA--IYVPRGVGNSFQALQDGTVYTYLVNAHWS 141
Query: 135 VEHDSG---VAWQDKSIDITWPL 154
+E V D + I WP+
Sbjct: 142 LEQKKTYTFVNLADPELGIEWPI 164
>gi|305431506|ref|ZP_07400683.1| possible dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter coli
JV20]
gi|304445428|gb|EFM38064.1| possible dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter coli
JV20]
Length = 180
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 9/164 (5%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I+ KF D RG ++ + L ++ + + + + + +RG+H +
Sbjct: 16 VYIITPNKFRDLRGEIWTAFTEEDLGDIVPKGLKFKHDKFINSHFNVLRGIHGDIKTW-- 73
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV C+ G + + VD R++SPTY W I+ +N I +P + +
Sbjct: 74 -KLVTCVYGEVHQVVVDCRKDSPTYLKWEKFIINQDNQQLILLPPNMGNSHYVSSKDAVY 132
Query: 126 IYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK+ ++ AW D+ I I WP T P +SE+D
Sbjct: 133 YYKLAYEGEYLDAPDQFTYAWNDERIGIDWP---TKSPILSERD 173
>gi|309952140|gb|ADO95349.1| RmlC [Streptococcus pneumoniae]
Length = 198
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 17/168 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N S S +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSLS-RKNVLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R T+G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADGGKVLGSWVDLREGE-TFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D++++E A + D S+ I W + VSE D++ P L +
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIEWE--NIAEAEVSEADKHHPLLKDV 189
>gi|333023925|ref|ZP_08451989.1| PlaA8 [Streptomyces sp. Tu6071]
gi|81250718|gb|ABB69763.1| PlaA8 [Streptomyces sp. Tu6071]
gi|332743777|gb|EGJ74218.1| PlaA8 [Streptomyces sp. Tu6071]
Length = 191
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 4/163 (2%)
Query: 13 KFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
K+ D RG F + + +L + G Q N S S TIRG+H +AKL+ C
Sbjct: 18 KYHDCRGCFFEAFRIEELRRATGFPFQVRQGNVSVSRRS-TIRGVHGTGGDSGEAKLISC 76
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
G + D+ VD+R SP +G + + ++ ++G I++ G H + L +T + Y +
Sbjct: 77 ARGAVLDVVVDLRVGSPVFGTFEAAPLTEDSGELIFLVPGLGHAYQALTDDTRITYLCAE 136
Query: 132 FYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ + D+ + + W L + P +S+KD+ P L Q
Sbjct: 137 RFVPGSQIDINPLDQELALPWDLSEE--PVISDKDRAAPGLRQ 177
>gi|23464835|ref|NP_695438.1| fused dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase enzyme involved
in rhamnose biosynthesis [Bifidobacterium longum
NCC2705]
gi|23325419|gb|AAN24074.1| possible fused dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase enzyme involved
in rhamnose biosynthesis [Bifidobacterium longum
NCC2705]
Length = 480
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 11/143 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + LGL D VQ+N SF+ G RG+H + P+ K + G
Sbjct: 27 DNRGWFKENWQRAKMTALGLPDFGPVQNNISFNAKKGVTRGIHAE--PWD--KYISIATG 82
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+F VD+R ++G + + + IY+P G + F LE T Y V +S
Sbjct: 83 SVFGAWVDLRPGD-SFGQVYTTVLDPSKA--IYVPRGVGNSFQALEDGTAYTYLVNAHWS 139
Query: 135 VEHDSG---VAWQDKSIDITWPL 154
+E V D ++I WP+
Sbjct: 140 LEQKKTYTFVNLADPDLNIQWPI 162
>gi|23335975|ref|ZP_00121205.1| COG1091: dTDP-4-dehydrorhamnose reductase [Bifidobacterium longum
DJO10A]
gi|189440431|ref|YP_001955512.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bifidobacterium longum
DJO10A]
gi|189428866|gb|ACD99014.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bifidobacterium longum
DJO10A]
Length = 483
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + LGL D VQ+N S++ G RG+H + P+ K + AG
Sbjct: 29 DNRGWFKENWQRAKMMGLGLPDFGPVQNNISYNATKGVTRGIHAE--PWD--KYISIAAG 84
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
IF VD+R ++G + + + IY+P G + F L+ T Y V +S
Sbjct: 85 EIFGAWVDLRPGE-SFGQVYTTRLDPSKA--IYVPRGVGNSFQALQDGTVYTYLVNAHWS 141
Query: 135 VEHDSG---VAWQDKSIDITWPL 154
+E V D ++I WP+
Sbjct: 142 LEQKKTYTFVNLADPELNIQWPI 164
>gi|317482685|ref|ZP_07941699.1| RmlD substrate binding domain-containing protein [Bifidobacterium
sp. 12_1_47BFAA]
gi|322690053|ref|YP_004209787.1| dTDP-4-dehydrorhamnose
reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Bifidobacterium longum subsp. infantis 157F]
gi|291516583|emb|CBK70199.1| dTDP-4-dehydrorhamnose reductase [Bifidobacterium longum subsp.
longum F8]
gi|316915931|gb|EFV37339.1| RmlD substrate binding domain-containing protein [Bifidobacterium
sp. 12_1_47BFAA]
gi|320461389|dbj|BAJ72009.1| dTDP-4-dehydrorhamnose
reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Bifidobacterium longum subsp. infantis 157F]
Length = 483
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + LGL D VQ+N S++ G RG+H + P+ K + AG
Sbjct: 29 DNRGWFKENWQRAKMMGLGLPDFGPVQNNISYNATKGVTRGIHAE--PWD--KYISIAAG 84
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
IF VD+R ++G + + + IY+P G + F L+ T Y V +S
Sbjct: 85 EIFGAWVDLRPGE-SFGQVFTTRLDPSRA--IYVPRGVGNSFQALQDGTVYTYLVNAHWS 141
Query: 135 VEHDSG---VAWQDKSIDITWPL 154
+E V D ++I WP+
Sbjct: 142 LEQKKTYTFVNLADPELNIQWPI 164
>gi|170516928|gb|ACB15402.1| RmlCD [Bifidobacterium longum]
Length = 483
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + LGL D VQ+N S++ G RG+H + P+ K + AG
Sbjct: 29 DNRGWFKENWQRAKMMGLGLPDFGPVQNNISYNATKGVTRGIHAE--PWD--KYISIAAG 84
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
IF VD+R ++G + + + IY+P G + F L+ T Y V +S
Sbjct: 85 EIFGAWVDLRPGE-SFGQVYTTRLDPSRA--IYVPRGVGNSFQALQDGTVYTYLVNAHWS 141
Query: 135 VEHDSG---VAWQDKSIDITWPL 154
+E V D ++I WP+
Sbjct: 142 LEQKKTYTFVNLADPELNIQWPI 164
>gi|237752229|ref|ZP_04582709.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Helicobacter winghamensis
ATCC BAA-430]
gi|229376471|gb|EEO26562.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Helicobacter winghamensis
ATCC BAA-430]
Length = 170
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL---GLQDVFVQDNHSFSFDCGTIRGLHF 58
+ + I+ KF+D RG +YS + L GL+ FV D + S +RG+H
Sbjct: 34 KLKGIYIITPNKFQDLRGEIWSSYSKDAIGHLLPNGLE--FVLDKFTLS-KPNVLRGIHG 90
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG-FM 117
+ KLV CI G I+ + VD R++SPTY W I+++N I IP F + ++
Sbjct: 91 DHKSW---KLVTCITGEIYQVVVDCRKDSPTYLKWEKFIINSDNQKLILIPPYFGNAQYV 147
Query: 118 TLEMNTEVIYKVT 130
+ + ++ YK+
Sbjct: 148 SSKCDSMYCYKLA 160
>gi|57505644|ref|ZP_00371571.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter upsaliensis
RM3195]
gi|57016191|gb|EAL52978.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter upsaliensis
RM3195]
Length = 180
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 75/172 (43%), Gaps = 18/172 (10%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL---GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++ V I+ FED RG + K L GL FV D + S +RG+H
Sbjct: 13 LSGVYIITPNFFEDFRGEIWSVFEDKAFVNLLPKGLN--FVLDKFTLS-KSNVLRGIHGD 69
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ KLV C++G I + VD R+ SPTY + S IS+ I IP F + L
Sbjct: 70 HKSW---KLVTCVSGEIQQVVVDCRKESPTYLKYESFNISSKQKKLILIPPFFGNAHYVL 126
Query: 120 EMNTEVIYKVT-----DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ E +Y ++ E AW D+ I I W + IL SE+D
Sbjct: 127 -GDKEALYYYKWAYEGEYVDAEDQFTYAWNDERIGIKWQGENPIL---SERD 174
>gi|291457003|ref|ZP_06596393.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Bifidobacterium breve DSM 20213]
gi|291381414|gb|EFE88932.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Bifidobacterium breve DSM 20213]
Length = 483
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + LGL D VQ+N S++ G RG+H + P+ K + AG
Sbjct: 29 DNRGWFKENWQRAKMMGLGLPDFGPVQNNISYNATKGVTRGIHAE--PWD--KYISIAAG 84
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+F VD+R ++G + + + IY+P G + F L+ T Y V +S
Sbjct: 85 EVFGAWVDLRPGE-SFGQVYTTRLDPSKA--IYVPRGVGNSFQALQDGTVYTYLVNAHWS 141
Query: 135 VEHDSG---VAWQDKSIDITWPL 154
+E V D ++I WP+
Sbjct: 142 LEQKKTYTFVNLADPELNIQWPI 164
>gi|270284084|ref|ZP_05965516.2| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Bifidobacterium gallicum DSM 20093]
gi|270278058|gb|EFA23912.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Bifidobacterium gallicum DSM 20093]
Length = 503
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 15/163 (9%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
D+RGWF + + + LGL F VQ+N SF+ G RG+H + P+ K +
Sbjct: 47 DNRGWFKENWQKAKMTALGLPKDFEPVQNNISFNAKRGVTRGIHAE--PW--DKFISLAT 102
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G IF VD+R T+G + + + I++P G + F LE T Y V +
Sbjct: 103 GEIFGAWVDLRPGV-TFGEVFTTRLDPSKA--IFVPRGVGNSFQALEDGTAYSYLVNAHW 159
Query: 134 SVEHDSG---VAWQDKSIDITWPL-LDTILPSVSEKDQNLPFL 172
S++ V D + I WP+ L+ +SE D + P L
Sbjct: 160 SLDQKKNYTFVNLADPQLAIQWPIPLEDC--ELSEADLHHPLL 200
>gi|237750314|ref|ZP_04580794.1| LOW QUALITY PROTEIN: dTDP-4-dehydrorhamnose 3,5-epimerase
[Helicobacter bilis ATCC 43879]
gi|229374208|gb|EEO24599.1| LOW QUALITY PROTEIN: dTDP-4-dehydrorhamnose 3,5-epimerase
[Helicobacter bilis ATCC 43879]
Length = 149
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPT 110
+RG+H Y KLV C+ G + + VD R++S TY W I+ NN I IP
Sbjct: 29 NVLRGIHGDVKTY---KLVTCVYGEVHQVVVDCRKDSQTYLKWEKFIINENNQQIILIPP 85
Query: 111 GFAHGFMTLEMNTEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ + + YK+ ++ + AW D+ I I WP T P +SE+D
Sbjct: 86 NMGNSYYVSSNHAVYYYKLAYDGEYLDAQDQFTYAWNDEKIGINWP---TTKPILSERD 141
>gi|153951869|ref|YP_001397849.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni subsp.
doylei 269.97]
gi|152939315|gb|ABS44056.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni subsp.
doylei 269.97]
Length = 180
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 75/172 (43%), Gaps = 18/172 (10%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL---GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++ V I+ FED RG + K L GL FV D + S +RG+H
Sbjct: 13 LSGVYIITPNFFEDFRGEIWSVFEDKAFVNLLPKGLN--FVLDKFTLS-KPNVLRGIHGD 69
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ KLV C++G I + VD R+ SPTY + S IS+ I IP F + L
Sbjct: 70 HKSW---KLVTCVSGEIQQVVVDCRKESPTYLKYESFNISSKQKKLILIPPFFGNAHYVL 126
Query: 120 EMNTEVIYKVT-----DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ E +Y ++ E AW D+ I I W + IL SE+D
Sbjct: 127 -GDKEALYYYKWAYEGEYVDAEDQFTYAWNDERIGIKWQGENPIL---SERD 174
>gi|328955704|ref|YP_004373037.1| dTDP-4-dehydrorhamnose 3,5-epimerase; dTDP-4-dehydrorhamnose
reductase [Coriobacterium glomerans PW2]
gi|328456028|gb|AEB07222.1| dTDP-4-dehydrorhamnose 3,5-epimerase ;dTDP-4-dehydrorhamnose
reductase [Coriobacterium glomerans PW2]
Length = 486
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 12/164 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + + LGL D+ VQ+N S++ G RG+H + P+ K + G
Sbjct: 27 DNRGWFKENWQRAKMVALGLPDIRPVQNNISYNTSRGVTRGIHAE--PW--DKYISIAIG 82
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
IF VD+R + T+G + + + I++P G + F TL T Y V +S
Sbjct: 83 EIFGAWVDLRPGA-TFGRVFTCTLDPSKA--IFVPRGVGNAFQTLADGTTYTYLVDAHWS 139
Query: 135 VEHD---SGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + V D + I WP+ T +S+ D+ P L ++
Sbjct: 140 LAQKRTYTFVNLADPDLAIDWPIPLTAA-ELSDADRAHPPLREV 182
>gi|237751852|ref|ZP_04582332.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229376756|gb|EEO26847.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 171
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL---GLQDVFVQDNHSFSFDCGTIRGLHF 58
+ V I+ KF+D RG ++S+ + +L GL+ F+ D +S IRG+H
Sbjct: 36 KLKGVYIITPSKFQDLRGEIWTAFTSEKIDKLLPSGLR--FIHDKFIYSHH-NVIRGIHG 92
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
Y K C+ G I + VD R++SPTY W I+ N I +P GF +
Sbjct: 93 DLKTY---KFATCVYGEIHQVVVDCRKDSPTYLQWEKFTINQENQQIILVPAGFGNAHCV 149
Query: 119 LEMNTEVIYK 128
+ YK
Sbjct: 150 RSKSAVYYYK 159
>gi|91069858|gb|ABE10789.1| dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase, putative [uncultured
Prochlorococcus marinus clone ASNC1363]
Length = 166
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+I+K +F D RG TY +K + F D S S IRG+H+
Sbjct: 10 IQGVKIIKYDRFIDLRGSIWTTYLENKIKNIK----FNHDKFSVSHK-DVIRGIHYDNKT 64
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ KLV + G I + VD+R++S TY + I N I IP +GF
Sbjct: 65 F---KLVTAVYGAIDQVVVDMRKDSDTYKASMVFNIDDNKRFSILIPPMVGNGFRVKSDI 121
Query: 123 TEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPS 161
YK++ + + + W D +I I W IL +
Sbjct: 122 AVYHYKLSYLGKYLDADKQYTIKWDDPTIGINWKCEKPILSN 163
>gi|119026526|ref|YP_910371.1| fused dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase enzyme involved
in rhamnose biosynthesis [Bifidobacterium adolescentis
ATCC 15703]
gi|118766110|dbj|BAF40289.1| possible fused dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase enzyme involved
in rhamnose biosynthesis [Bifidobacterium adolescentis
ATCC 15703]
Length = 476
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 11/143 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RGWF + + +LGL D VQ+N S++ G RG+H + P+ K + AG
Sbjct: 30 DNRGWFKENWQRAKQTKLGLPDFGPVQNNISYNAKKGVTRGIHAE--PWD--KYISIAAG 85
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+F VD+R ++G + + + IY+P G + F LE T Y V +S
Sbjct: 86 SVFGAWVDLRPGE-SFGQVYTTVLDPSKA--IYVPRGVGNSFQALEDGTVYTYLVNAHWS 142
Query: 135 VEHDSG---VAWQDKSIDITWPL 154
+E V D + I WP+
Sbjct: 143 LEQKKTYTFVNLADPDLHIDWPI 165
>gi|120402375|ref|YP_952204.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium vanbaalenii
PYR-1]
gi|119955193|gb|ABM12198.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium vanbaalenii
PYR-1]
Length = 207
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 14/168 (8%)
Query: 16 DSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RG F + ++ + G + Q N S S G +RG+HF + P +QAK V C+ G
Sbjct: 21 DARGAFFEWFTDAGFTAITGHRLDLRQANCSVS-RAGVLRGVHFAQLPPSQAKYVSCVRG 79
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
+ D+ VDIR SPT+G W ++ + +Y+ G H F+ L ++ V Y + Y
Sbjct: 80 AVVDVVVDIRVGSPTFGRWDAVVLDDETHRSVYLSEGLGHAFLALHDDSVVTYLCSAGYD 139
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPS--------VSEKDQNLPFLNQ 174
+ + D +++I W PS +S++D+ P L Q
Sbjct: 140 PAREHTIDPLDPALEIDW----NAWPSRAADGELILSDRDRAAPSLEQ 183
>gi|302870779|ref|YP_003839415.1| dTDP-4-dehydrorhamnose 35-epimerase related [Caldicellulosiruptor
obsidiansis OB47]
gi|302573638|gb|ADL41429.1| dTDP-4-dehydrorhamnose 35-epimerase related [Caldicellulosiruptor
obsidiansis OB47]
Length = 153
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++ + KF D RG+F + L E GL + F Q + S ++ G I+ H+ +
Sbjct: 4 IEGVKVKRLEKFADDRGFFMEI----LRDEDGLLEKFGQASMSLTY-PGVIKAFHYHK-- 56
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q + G + D+R +SPTY + +N + + IP AHG+ L
Sbjct: 57 -LQDDVWFFPKGNAQVVLYDLRPDSPTYKKTNVFYMGEHNPIVLLIPKMVAHGYRVLGNE 115
Query: 123 TEVI-YKVTDFYSVEH--DSGVAWQDKSIDITW 152
+I Y T+ Y+ E+ + + W DK I+ W
Sbjct: 116 PAIIVYFTTEHYNRENPDEYRIPWDDKEINFDW 148
>gi|123471692|ref|XP_001319044.1| dTDP-4-dehydrorhamnose 3,5-epimerase family protein [Trichomonas
vaginalis G3]
gi|121901818|gb|EAY06821.1| dTDP-4-dehydrorhamnose 3,5-epimerase family protein [Trichomonas
vaginalis G3]
Length = 420
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 15/121 (12%)
Query: 53 IRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTY----GCWVSLEISANNGLQIYI 108
IRG+H PY K+ C G++FD+ VD+R NSPT+ GCW+ + + +
Sbjct: 62 IRGIHVA--PYH--KIAFCPYGKMFDVCVDMRPNSPTFMKWDGCWL------DKDTHVLV 111
Query: 109 PTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL-LDTILPSVSEKDQ 167
P AHG E ++ + Y + D + D I I WP +++ +SEKD
Sbjct: 112 PPYCAHGVFAAEDDSVLCYYQGGCFFPHLDFAINPMDPQIGIKWPTPVNSDKYVLSEKDT 171
Query: 168 N 168
N
Sbjct: 172 N 172
>gi|222528108|ref|YP_002571990.1| dTDP-4-dehydrorhamnose 35-epimerase-like protein
[Caldicellulosiruptor bescii DSM 6725]
gi|222454955|gb|ACM59217.1| dTDP-4-dehydrorhamnose 35-epimerase related [Caldicellulosiruptor
bescii DSM 6725]
Length = 153
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++ + KF D RG+F + L E G + F Q + S ++ G I+ H+ +
Sbjct: 4 IEGVKVKRLEKFADDRGFFMEI----LRDEDGFLEKFGQASMSLTY-PGVIKAFHYHK-- 56
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q + G + D+R +SPTY + +N + + IP AHG+ L
Sbjct: 57 -LQDDVWFFPKGNAQVVLYDLRPDSPTYKKTNVFYMGEHNPIVLLIPRMVAHGYRVLGNE 115
Query: 123 TEVI-YKVTDFYSVEH--DSGVAWQDKSIDITW 152
+I Y T+ Y+ E+ + + W DK I+ W
Sbjct: 116 PAIIVYFTTEHYNRENPDEYRIPWDDKEINFDW 148
>gi|195978346|ref|YP_002123590.1| dTDP-4-Keto-6-Deoxyglucose-3 5-epimerase RmlC [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|195975051|gb|ACG62577.1| dTDP-4-Keto-6-Deoxyglucose-3 5-epimerase RmlC [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 180
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 15/149 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
D+RGWF + + + + LG + F +Q+N SFS +RGLH + P+ + V
Sbjct: 31 DNRGWFKENFQKEKMIPLGFPEQFFAAGKLQNNISFSRKH-VLRGLHAE--PWDKYISV- 86
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
G++ VD+R ++G I A+ G I++P G A+GF L Y V
Sbjct: 87 ADEGKVLGAWVDLREGD-SFGHTYQTVIDASKG--IFVPRGVANGFQVLTDKVAYTYLVN 143
Query: 131 DFYSVEHDSGVA---WQDKSIDITWPLLD 156
D++++E A + D S+ I W L+
Sbjct: 144 DYWALELKPKYAFVNYADPSLGIAWENLE 172
>gi|315639156|ref|ZP_07894322.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter upsaliensis
JV21]
gi|315480793|gb|EFU71431.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter upsaliensis
JV21]
Length = 180
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 74/172 (43%), Gaps = 18/172 (10%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL---GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++ V I+ FED RG + K L GL FV D + S +RG+H
Sbjct: 13 LSGVYIIMPNFFEDFRGEIWSVFEDKAFVNLLPKGLN--FVLDKFTLS-KPNVLRGIHGD 69
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ KLV C++G I + VD R+ SPTY + S IS+ I IP F + L
Sbjct: 70 HKSW---KLVTCVSGEIQQVVVDCRKESPTYLKYESFNISSKQKKLILIPPFFGNAHYVL 126
Query: 120 EMNTEVIYKVTDFYSVEHDSG-----VAWQDKSIDITWPLLDTILPSVSEKD 166
+ E +Y Y E+ A+ D+ I I W IL SE+D
Sbjct: 127 G-DKEALYYYKWAYEGEYMDADAQFTYAYNDERIGIKWQGEKPIL---SERD 174
>gi|251781269|ref|ZP_04824185.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|243081716|gb|EES47777.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 73
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I++ + F D+RG+F +TY+ + E GL +FVQDN S F G +RGLHFQ+
Sbjct: 11 IYGVYIIEPKVFGDNRGYFMETYNREQFLEAGLDMIFVQDNES-RFTKGVLRGLHFQK 67
>gi|116625282|ref|YP_827438.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Candidatus Solibacter
usitatus Ellin6076]
gi|116228444|gb|ABJ87153.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Candidatus Solibacter
usitatus Ellin6076]
Length = 173
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 5/151 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V++ F D RG+F + + Q + + ++ GT++ HF
Sbjct: 22 ISGVKVEPYALFPDDRGYFLEVHRMGRGLAAAFPPATTQMSAALNYP-GTVKAFHFH--- 77
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q + G + VD+R S TYG +L + A QI IP G HG+ +
Sbjct: 78 LHQHDCWAPVYGLLQVALVDLRLGSATYGARNTLYVGALRPWQILIPPGVGHGYKVIGNK 137
Query: 123 TEVIYKVTD-FYSVEHDSGVAWQDKSIDITW 152
++ +TD FY+ + + V + D I+ W
Sbjct: 138 EAMLVYLTDQFYNPKDEGRVPYNDPGINYDW 168
>gi|194016583|ref|ZP_03055197.1| spore coat polysaccharide biosynthesis protein SpsL [Bacillus
pumilus ATCC 7061]
gi|194012056|gb|EDW21624.1| spore coat polysaccharide biosynthesis protein SpsL [Bacillus
pumilus ATCC 7061]
Length = 151
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V+ K K D RG+F++ + + + F Q + S SF G I+ H+
Sbjct: 2 IDGVQTKKLMKHCDDRGFFAEL----IRDDEPMLQRFGQASWSKSF-PGVIKAFHYHE-- 54
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL-EM 121
Q + AG + D+R +SPT G + +N + + IP G AHG+ L E
Sbjct: 55 -KQDDVWFFPAGHAQVVLYDLREDSPTKGQTDVYYMGEDNPMLLLIPKGVAHGYRVLGET 113
Query: 122 NTEVIYKVTDFYSVEH--DSGVAWQDKSIDITW 152
+++Y T+ Y ++ + +AW D++I W
Sbjct: 114 PLQIVYFTTESYDPKNPDEKRIAWNDETIGFDW 146
>gi|159149194|gb|ABW91159.1| NDP-hexose 3,5-epimerase [Streptomyces eurythermus]
Length = 202
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 4/162 (2%)
Query: 14 FEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
D RG F + + L+ G Q N + S +RG+H P Q K+V C+
Sbjct: 19 LPDHRGRFYEGLRYETLRAATGHAFELRQVNFTVSHR-NVLRGVHGTTMPPGQGKIVTCV 77
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
G + VD+R SP +G L + + +Y+P G ++ L +T V Y
Sbjct: 78 RGAARAMVVDLRVGSPAFGHHDVLRLDPRDATALYVPDGLGLAYVALTDDTCVNYLCDRE 137
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
Y V D ++ + W L + P S +D P L +
Sbjct: 138 YVHGTIIDVDALDPALALPWDLDEP--PVRSARDAAAPTLAE 177
>gi|322412000|gb|EFY02908.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus dysgalactiae
subsp. dysgalactiae ATCC 27957]
Length = 153
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 12/139 (8%)
Query: 40 VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEIS 99
+Q+N SFS +RGLH + P+ + V G++ VD+R T+G I
Sbjct: 16 LQNNVSFSRQH-VLRGLHAE--PWDKYISV-ADDGKVLGAWVDLREGD-TFGNVYQTVID 70
Query: 100 ANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVA---WQDKSIDITWPLLD 156
A+ G I++P G A+GF L Y V D+++++ A + D S+ ITW L
Sbjct: 71 ASKG--IFVPRGVANGFQVLSETVSYSYLVNDYWALDLKPKYAFVNYADPSLGITWENLA 128
Query: 157 TILPSVSEKDQNLPFLNQI 175
VSE D+N P L+ +
Sbjct: 129 AA--EVSEADKNHPLLSDV 145
>gi|94992307|ref|YP_600406.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS2096]
gi|94545815|gb|ABF35862.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS2096]
Length = 164
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 12/139 (8%)
Query: 40 VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEIS 99
+Q+N SFS +RGLH + P+ + V G++ VD+R T+G I
Sbjct: 27 LQNNVSFSRQH-VLRGLHAE--PWDKYISV-ADDGKVLGAWVDLREGE-TFGNVYQTVID 81
Query: 100 ANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVA---WQDKSIDITWPLLD 156
A+ G+ ++P G A+GF L Y V D+++++ A + D S+ ITW L
Sbjct: 82 ASKGM--FVPRGVANGFQVLSETVSYSYLVNDYWALDLKPKYAFVNYADPSLGITWENLA 139
Query: 157 TILPSVSEKDQNLPFLNQI 175
VSE D+N P L+ +
Sbjct: 140 AA--EVSEADKNHPLLSDV 156
>gi|147921181|ref|YP_685008.1| dTDP-4-dehydrorhamnose 3,5 epimerase [uncultured methanogenic
archaeon RC-I]
gi|110620404|emb|CAJ35682.1| dTDP-4-dehydrorhamnose 3,5 epimerase [uncultured methanogenic
archaeon RC-I]
Length = 157
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 61/159 (38%), Gaps = 15/159 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTY--SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V I K R D RGW + + K+ G V+V + G ++G H+
Sbjct: 3 DIEGVVIKKLRVIPDERGWLMEILRCDDPMFKQFG--QVYVTTAYP-----GVVKGWHYH 55
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ Q CI G + D R SPT G + L + N + I +P G HGF +
Sbjct: 56 K---KQTDNFTCIHGMMKVALYDAREGSPTRGNLMELFVGEKNPILISVPPGVYHGFKGI 112
Query: 120 EMNTEVIYKVTDF---YSVEHDSGVAWQDKSIDITWPLL 155
T V Y+ + + K I W LL
Sbjct: 113 GTETAYFLSVPTLPYNYAEPDEYRLPPDSKEIPYDWGLL 151
>gi|291617821|ref|YP_003520563.1| Hypothetical Protein PANA_2268 [Pantoea ananatis LMG 20103]
gi|291152851|gb|ADD77435.1| Hypothetical Protein PANA_2268 [Pantoea ananatis LMG 20103]
Length = 170
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 105 QIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSE 164
Q++IP G AHGF+ L + YK T +Y+ + ++ + W D + I WP+ IL S
Sbjct: 102 QLWIPPGLAHGFVVLSDVADFEYKCTQYYNPKDEACLMWNDPDVAIQWPVEQPIL---SV 158
Query: 165 KDQN 168
KDQ
Sbjct: 159 KDQQ 162
>gi|120555508|ref|YP_959859.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Marinobacter
aquaeolei VT8]
gi|120325357|gb|ABM19672.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein [Marinobacter
aquaeolei VT8]
Length = 115
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 69 VRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128
+R GR+ D+ D NSP +G WV +S +++ G GF+ + + YK
Sbjct: 1 MRVTLGRVSDVFADQCTNSPIFGRWVGKYLSEVKKRMLWVSVGGGRGFLVISDTADFQYK 60
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
T+F+ H+ + W +P L+ L + +D L
Sbjct: 61 CTNFFGPMHECCICW-------CYPALNLNLSEATSEDVQL 94
>gi|157694175|ref|YP_001488637.1| spore coat polysaccharide biosynthesis protein SpsL [Bacillus
pumilus SAFR-032]
gi|157682933|gb|ABV64077.1| spore coat polysaccharide biosynthesis protein SpsL [Bacillus
pumilus SAFR-032]
Length = 151
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 15/155 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTY--SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ V+ K K D RG+F++ LLK G Q + S SF G I+ H+
Sbjct: 2 IDGVQTKKLMKHCDDRGFFAELIRDDEPLLKRFG------QASWSKSF-PGVIKAFHYHE 54
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL- 119
Q + G + D+R +SPT + +N + + IP G AHG+ L
Sbjct: 55 ---KQDDVWFFPVGHAQVVLYDLREDSPTRRQTDVYYMGEDNPMLLLIPKGVAHGYRVLG 111
Query: 120 EMNTEVIYKVTDFYSVEH--DSGVAWQDKSIDITW 152
E +++Y T+ Y ++ + +AW D++I W
Sbjct: 112 ETPLQIVYFTTESYDPKNPDEKRIAWNDETIGFDW 146
>gi|296331421|ref|ZP_06873893.1| nucleotide sugar epimerase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305676406|ref|YP_003868078.1| nucleotide sugar epimerase [Bacillus subtilis subsp. spizizenii
str. W23]
gi|296151536|gb|EFG92413.1| nucleotide sugar epimerase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305414650|gb|ADM39769.1| nucleotide sugar epimerase [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 151
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V++ K K D RG+F++ + + L + F Q + S S+ G I+ H+
Sbjct: 2 IDGVKVKKLTKHSDDRGFFAEL----VRDDENLLEHFGQASWSKSY-PGVIKAFHYHE-- 54
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL-EM 121
Q L G + D+R +S T G + +N + + IP G AHG+ L E
Sbjct: 55 -KQDDLWFFPTGHAQVVLYDLREDSKTKGETDVYYMGEDNPMLLLIPKGVAHGYRVLGET 113
Query: 122 NTEVIYKVTDFYSVEH--DSGVAWQDKSIDITW 152
+IY T Y+ + + + W D++I W
Sbjct: 114 PLTIIYFTTMSYNPDQPDEKRIPWNDETIGFNW 146
>gi|291486370|dbj|BAI87445.1| spore coat polysaccharide biosynthesis protein SpsL [Bacillus
subtilis subsp. natto BEST195]
Length = 151
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V++ K K D RG+F++ + + L + F Q + S S+ G I+ H+
Sbjct: 2 IDGVKVKKLMKHSDDRGFFAEL----VRDDENLLEHFGQASWSKSY-PGVIKAFHYHE-- 54
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL-EM 121
Q L G + D+R +S T G + +N + + IP G AHG+ L E
Sbjct: 55 -KQDDLWFFPTGHAQVVLYDLREDSKTKGETDVYYMGEDNPMLLLIPKGVAHGYRVLGET 113
Query: 122 NTEVIYKVTDFYSVEH--DSGVAWQDKSIDITW 152
+IY T Y+ + + + W D++I W
Sbjct: 114 PLTIIYFTTMSYNPDQPDEKRIPWNDETIGFNW 146
>gi|50812301|ref|YP_054595.1| nucleotide sugar epimerase [Bacillus subtilis subsp. subtilis str.
168]
gi|221311745|ref|ZP_03593592.1| spore coat polysaccharide synthesis [Bacillus subtilis subsp.
subtilis str. 168]
gi|221316071|ref|ZP_03597876.1| spore coat polysaccharide synthesis [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221320982|ref|ZP_03602276.1| spore coat polysaccharide synthesis [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221325267|ref|ZP_03606561.1| spore coat polysaccharide synthesis [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321313340|ref|YP_004205627.1| nucleotide sugar epimerase [Bacillus subtilis BSn5]
gi|42559775|sp|Q7WY56|SPSL_BACSU RecName: Full=Spore coat polysaccharide biosynthesis protein spsL
gi|32468835|emb|CAE01469.1| nucleotide sugar epimerase [Bacillus subtilis subsp. subtilis str.
168]
gi|320019614|gb|ADV94600.1| nucleotide sugar epimerase [Bacillus subtilis BSn5]
Length = 151
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V++ K K D RG+F++ + + L + F Q + S S+ G I+ H+
Sbjct: 2 IDGVKVKKLMKHSDDRGFFAEL----VRDDENLLEHFGQASWSKSY-PGVIKAFHYHE-- 54
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL-EM 121
Q L G + D+R +S T G + +N + + IP G AHG+ L E
Sbjct: 55 -KQDDLWFFPTGHAQVVLYDLREDSKTKGETDVYYMGEDNPMLLLIPKGVAHGYRVLGET 113
Query: 122 NTEVIYKVTDFYSVEH--DSGVAWQDKSIDITW 152
+IY T Y+ + + + W D++I W
Sbjct: 114 PLTIIYFTTMSYNPDQPDEKRIPWDDETIGFNW 146
>gi|15615928|ref|NP_244232.1| spore coat polysaccharide synthesis (dTDP-4-dehydrorhamnose
epimerase) [Bacillus halodurans C-125]
gi|10175989|dbj|BAB07085.1| spore coat polysaccharide synthesis (dTDP-4-dehydrorhamnose
epimerase) [Bacillus halodurans C-125]
Length = 151
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++ + K+ D RG+F++ + + L + F Q + S S+ G I+ H+
Sbjct: 2 IEGVKVKRLTKYCDDRGFFAEL----VRDDEHLLEHFGQASVSMSY-PGVIKAFHYHN-- 54
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q L +G + D+R NS T G + N + + IP G AHG+ L
Sbjct: 55 -EQDDLWYFPSGNAQVVLHDLRPNSKTAGITDVYYMGEENPILLLIPKGVAHGYRVLGGK 113
Query: 123 -TEVIYKVTDFYSVEH--DSGVAWQDKSIDITW 152
+IY T Y+ + + +AW D SI+ W
Sbjct: 114 PATIIYFTTKSYNRKSPDEKRLAWDDPSINFDW 146
>gi|24379857|ref|NP_721812.1| putative dTDP-4-keto-L-rhamnose reductase [Streptococcus mutans
UA159]
gi|24377830|gb|AAN59118.1|AE014978_9 putative dTDP-4-keto-L-rhamnose reductase [Streptococcus mutans
UA159]
Length = 153
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 12/139 (8%)
Query: 40 VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEIS 99
+Q+N SFS +RGLH + P+ + + G++ +D+R ++G I
Sbjct: 16 LQNNVSFS-RKNVLRGLHAE--PWDKYISI-ADEGKVLGSWIDLREGD-SFGHVYQAVID 70
Query: 100 ANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVA---WQDKSIDITWPLLD 156
A+ G I++P G A+GF L Y V D++++E A + D ++ I W L+
Sbjct: 71 ASKG--IFVPRGVANGFQVLSDKVSYSYLVNDYWALELKPKYAFVNYADPTLGIEWENLE 128
Query: 157 TILPSVSEKDQNLPFLNQI 175
VSE D+N P L +
Sbjct: 129 EA--QVSEADKNHPLLKDV 145
>gi|89098350|ref|ZP_01171234.1| spore coat polysaccharide synthesis [Bacillus sp. NRRL B-14911]
gi|89086899|gb|EAR66016.1| spore coat polysaccharide synthesis [Bacillus sp. NRRL B-14911]
Length = 152
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 11/155 (7%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M I V K K D RG+F++ + + L F Q + S S+ G I+ H+
Sbjct: 1 MQIEGVITKKLIKHCDDRGFFAEV----VRDDENLLSHFGQLSWSTSYP-GVIKAFHYHE 55
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q L +G + D+R NS ++G + NN + + IP G AHG+ L
Sbjct: 56 ---EQDDLWFFPSGNAQVVLYDLRENSRSFGETNVYYMGENNPMILLIPKGVAHGYRVLG 112
Query: 121 MN-TEVIYKVTDFY--SVEHDSGVAWQDKSIDITW 152
N V+Y T Y + + + W D SI W
Sbjct: 113 KNPATVVYCTTKSYNPAAPDEKRIPWDDPSIGFDW 147
>gi|269837010|ref|YP_003319238.1| dTDP-4-dehydrorhamnose 3,5 epimerase [Sphaerobacter thermophilus
DSM 20745]
gi|269786273|gb|ACZ38416.1| dTDP-4-dehydrorhamnose 3,5 epimerase [Sphaerobacter thermophilus
DSM 20745]
Length = 151
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPT 110
G IRG H+ + Q C+ G I DIR +SPTYG I +N + + IP
Sbjct: 45 GVIRGWHYHK---KQTDYFTCVKGMIKVPLYDIREDSPTYGELNEFFIGDDNRIVVKIPA 101
Query: 111 GFAHGFMTL 119
G HGF +
Sbjct: 102 GVLHGFKNI 110
>gi|169840779|ref|ZP_02873892.1| dTDP-4-dehydrorhamnose 3,5-epimerase [candidate division TM7
single-cell isolate TM7a]
Length = 77
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 43 NHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYG 91
N S +RGLHFQ + Q KLV I G ++D+AVD+R+ S T+G
Sbjct: 2 NSSLKISIRRLRGLHFQ-TKHTQGKLVCVIKGSVYDVAVDLRKGSKTFG 49
>gi|311070291|ref|YP_003975214.1| nucleotide sugar epimerase [Bacillus atrophaeus 1942]
gi|310870808|gb|ADP34283.1| nucleotide sugar epimerase [Bacillus atrophaeus 1942]
Length = 151
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++ K K D RG+F++ + + L + F Q + S S+ G I+ H+
Sbjct: 2 IKGVKVKKLTKHSDDRGFFAEL----VRDDENLLEHFGQASWSKSY-PGVIKAFHYHE-- 54
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL-EM 121
Q L G + D+R +S T G + +N + + IP G AHG+ L E
Sbjct: 55 -KQDDLWFFPTGHAQVVLYDLRDDSETKGETDVYFMGEDNPMLLLIPKGVAHGYRVLGET 113
Query: 122 NTEVIYKVTDFYSVEH--DSGVAWQDKSIDITW 152
+IY T Y+ + + + W D++I W
Sbjct: 114 PLTIIYFTTTSYNPDQPDEKRIPWNDETIGFNW 146
>gi|57790391|gb|AAW56125.1| Cj81-046 [Campylobacter jejuni subsp. jejuni 81-176]
Length = 106
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 15/91 (16%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKEL---GLQ---DVFVQDNHSFSFDCGTIRGLHFQ 59
V I+ KF D RG ++SK + +L GL+ D F+ H+ IRG+H
Sbjct: 16 VYIITPNKFRDLRGEIWTAFTSKAVDKLLPNGLKFIHDKFIHSKHN------VIRGIHGD 69
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTY 90
Y KL C+ G I + VD R++SPTY
Sbjct: 70 VKTY---KLATCVYGEIHQVVVDCRKDSPTY 97
>gi|308175507|ref|YP_003922212.1| spore coat polysaccharide synthesis protein SpsL [Bacillus
amyloliquefaciens DSM 7]
gi|307608371|emb|CBI44742.1| spore coat polysaccharide synthesis protein SpsL [Bacillus
amyloliquefaciens DSM 7]
gi|328913856|gb|AEB65452.1| spore coat polysaccharide synthesis protein SpsL [Bacillus
amyloliquefaciens LL3]
Length = 153
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 15/155 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTY--SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I K K D RG+FS+ +LL+ G Q + S S+ G I+ H+
Sbjct: 4 IEGVKIKKLIKHSDDRGFFSELVRDDEQLLEHFG------QASWSKSY-PGVIKAFHYHE 56
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL- 119
Q L G + D+R S T G + +N + + IP G AHG+ L
Sbjct: 57 ---KQDDLWFFPTGHAQVVLHDLREESATKGETDVYYMGEDNPMLLLIPKGVAHGYRVLG 113
Query: 120 EMNTEVIYKVTDFYSVEH--DSGVAWQDKSIDITW 152
E +IY T Y+ + + + W D++I W
Sbjct: 114 ETPLTIIYFTTMSYNPDQPDEKRIPWNDETIGFDW 148
>gi|328555485|gb|AEB25977.1| spore coat polysaccharide synthesis protein SpsL [Bacillus
amyloliquefaciens TA208]
Length = 151
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 15/155 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTY--SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I K K D RG+FS+ +LL+ G Q + S S+ G I+ H+
Sbjct: 2 IEGVKIKKLIKHSDDRGFFSELVRDDEQLLEHFG------QASWSKSY-PGVIKAFHYHE 54
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL- 119
Q L G + D+R S T G + +N + + IP G AHG+ L
Sbjct: 55 ---KQDDLWFFPTGHAQVVLHDLREESATKGETDVYYMGEDNPMLLLIPKGVAHGYRVLG 111
Query: 120 EMNTEVIYKVTDFYSVEH--DSGVAWQDKSIDITW 152
E +IY T Y+ + + + W D++I W
Sbjct: 112 ETPLTIIYFTTMSYNPDQPDEKRIPWNDETIGFDW 146
>gi|288917944|ref|ZP_06412303.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EUN1f]
gi|288350599|gb|EFC84817.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EUN1f]
Length = 71
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 110 TGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
G AHG+ TL +TE Y++ ++ HD G+ + D + I WPL ++ +S+KD+
Sbjct: 1 AGLAHGYQTLVDDTEATYQMNVPFTPGHDRGLRFDDPRLGIAWPLPVSV---ISDKDRAW 57
Query: 170 PFL 172
P L
Sbjct: 58 PLL 60
>gi|580881|emb|CAA51629.1| ipa-73d [Bacillus subtilis subsp. subtilis str. 168]
Length = 432
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V++ K K D RG+F++ + + L + F Q + S S+ G I+ H+
Sbjct: 283 IDGVKVKKLMKHSDDRGFFAEL----VRDDENLLEHFGQASWSKSYP-GVIKAFHYHE-- 335
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL-EM 121
Q L G + D+R +S T G + +N + + IP G AHG+ L E
Sbjct: 336 -KQDDLWFFPTGHAQVVLYDLREDSKTKGETDVYYMGEDNPMLLLIPKGVAHGYRVLGET 394
Query: 122 NTEVIYKVTDFYSVEH--DSGVAWQDKSIDITW 152
+IY T Y+ + + + W D++I W
Sbjct: 395 PLTIIYFTTMSYNPDQPDEKRIPWDDETIGFNW 427
>gi|23098582|ref|NP_692048.1| spore coat polysaccharide synthesis [Oceanobacillus iheyensis
HTE831]
gi|22776808|dbj|BAC13083.1| spore coat polysaccharide synthesis (dTDP-4-dehydrorhamnose
epimerase) [Oceanobacillus iheyensis HTE831]
Length = 151
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+I + K D RG+ ++ + + L F Q S S+ G I+ H+
Sbjct: 2 IEGVQIKRIEKHCDDRGYLAEL----VRDDEHLLSHFGQATISMSY-PGVIKAFHYHE-- 54
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q L +G + D+R+N+ T G + + +N + + IP G AHG+ L
Sbjct: 55 -KQDDLWYFASGNAQVVLYDLRKNTNTTGRTDVIYMGEHNPILLLIPKGIAHGYRVLGSK 113
Query: 123 -TEVIYKVTDFYSVE--HDSGVAWQDKSIDITW 152
+IY T Y+ + +AW D I+ W
Sbjct: 114 PATIIYFTTKSYNKNDPDEKRLAWNDPEINFNW 146
>gi|300728518|ref|ZP_07061877.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella bryantii B14]
gi|299774236|gb|EFI70869.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella bryantii B14]
Length = 62
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHF 58
I+ V I++ + F+D+RG+F +++S + +E + FVQDN S S G +RGLHF
Sbjct: 8 IDGVVIIEPKVFKDARGYFFESFSQREFEEKVRKINFVQDNESMS-SYGVMRGLHF 62
>gi|154687905|ref|YP_001423066.1| SpsL [Bacillus amyloliquefaciens FZB42]
gi|154353756|gb|ABS75835.1| SpsL [Bacillus amyloliquefaciens FZB42]
Length = 153
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++ K K D RG+FS+ + + L + F Q + S S+ G I+ H+
Sbjct: 4 IEGVKVKKLIKHSDDRGFFSEL----VRDDEHLLERFGQASWSKSY-PGVIKAFHYHE-- 56
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL-EM 121
Q L G + D+R S T G + +N + + IP G AHG+ L E
Sbjct: 57 -KQDDLWFFPTGHAQVVLHDLREESATKGETDVYYMGEDNPMLLLIPKGVAHGYRVLGET 115
Query: 122 NTEVIYKVTDFYSVEH--DSGVAWQDKSIDITW 152
+IY T Y+ + + + W D +I W
Sbjct: 116 PLTIIYFTTMSYNPDQPDEKRIPWNDDTIGFDW 148
>gi|291296407|ref|YP_003507805.1| dTDP-4-dehydrorhamnose 3 5-epimerase [Meiothermus ruber DSM 1279]
gi|290471366|gb|ADD28785.1| dTDP-4-dehydrorhamnose 3 5-epimerase [Meiothermus ruber DSM 1279]
Length = 137
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPT 110
G I H P Q +L + G + VD+R +SPT G S +S +YIP+
Sbjct: 31 GRINAFHLH-PKRTQDELWCVVQGALLVWLVDVRADSPTKGTKRSFLLSGEAPSLLYIPS 89
Query: 111 GFAHGFMTLEMNTEVIYKVTDFYS 134
G AHG+ ++Y + D ++
Sbjct: 90 GVAHGYRAGHQGALLLYAMNDQFN 113
>gi|297625076|ref|YP_003706510.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Truepera
radiovictrix DSM 17093]
gi|297166256|gb|ADI15967.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Truepera
radiovictrix DSM 17093]
Length = 197
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPT 110
G I H P Q +L I G++ VD+R SPT G + +S Q+++P
Sbjct: 91 GRINAFHIH-PREPQNELWTVIQGQLKVWLVDLRATSPTEGNKRAFILSGEEPAQLFVPA 149
Query: 111 GFAHGFMTLEMNTEVIYKVTDFYSVEH 137
G AHG+ ++Y + ++ EH
Sbjct: 150 GVAHGYQAGPEGALLLYTMDQQFNAEH 176
>gi|313844159|ref|YP_004061822.1| hypothetical protein OlV1_190 [Ostreococcus lucimarinus virus OlV1]
gi|312599544|gb|ADQ91566.1| hypothetical protein OlV1_190 [Ostreococcus lucimarinus virus OlV1]
Length = 396
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 22/166 (13%)
Query: 12 RKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
R F+DSRG + ++ F N +RGLH PY KL+
Sbjct: 2 RNFKDSRGEILFNIDEPPFE---IKQCFTTTNERH-----VLRGLHCS--PYP--KLITV 49
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
+G+IFD+ V + Y ++ N G + I AHG+ E +E++Y +
Sbjct: 50 NSGKIFDVIV---KPDGKYDAYI-----LNKGDSLLIEANCAHGYFCYE-KSEIVYFLGG 100
Query: 132 FYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
++ D W D ++I WP + +S KD + P ID+
Sbjct: 101 VFNSVLDKSYLWNDPILNIDWP-SEAKNAIISLKDLSNPTFKNIDT 145
>gi|20090758|ref|NP_616833.1| hypothetical protein MA1909 [Methanosarcina acetivorans C2A]
gi|19915817|gb|AAM05313.1| hypothetical protein MA_1909 [Methanosarcina acetivorans C2A]
Length = 181
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNH----SFSFDCGTIRGLHF 58
I V + T+ F D RG+ ++ L L +D+ QD S+S+ G I+G H
Sbjct: 29 IEGVVVKDTKLFSDERGFLTE------LIRLDDEDMKAQDIKQIIASYSY-PGMIKGWHL 81
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
Q + C++G + + D R +SPTY + + +YIP G HG
Sbjct: 82 HS---KQEDHLFCVSGMVKVVLYDYREDSPTYKVLNEIFMGDRYPRTVYIPPGIFHGTKN 138
Query: 119 LEMNTEVI 126
+ + V+
Sbjct: 139 VGNDVSVV 146
>gi|297567133|ref|YP_003686105.1| dTDP-4-dehydrorhamnose 35-epimerase-like protein [Meiothermus
silvanus DSM 9946]
gi|296851582|gb|ADH64597.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Meiothermus
silvanus DSM 9946]
Length = 176
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPT 110
G I H P Q +L IAG + VD+R++SPT G + +S +YIP+
Sbjct: 70 GRINAFHLH-PKRVQDELWCVIAGELKVWLVDVRKDSPTRGNKRAYLLSGEAPALLYIPS 128
Query: 111 GFAHGFMTLEMNTEVIYKVT 130
G AHG+ ++Y +
Sbjct: 129 GVAHGYRAGARGATLLYAMN 148
>gi|219852974|ref|YP_002467406.1| dTDP-4-dehydrorhamnose 3,5 epimerase [Methanosphaerula palustris
E1-9c]
gi|219547233|gb|ACL17683.1| dTDP-4-dehydrorhamnose 3,5 epimerase [Methanosphaerula palustris
E1-9c]
Length = 158
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 12/129 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDC--GTIRGLHFQR 60
I+ V I + D RGW + + +F Q + G ++G H+ +
Sbjct: 5 IDGVVIKPLKVIPDERGWLMEILRND-------DPIFTQFGQVYMTTAYPGVVKGWHYHK 57
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q C+ G + D R S TYG + + + N + I +P G HGF +
Sbjct: 58 ---KQTDNFTCVHGMMKVALYDKREGSSTYGALMEIFVGEKNPVLISVPPGVYHGFKGIG 114
Query: 121 MNTEVIYKV 129
T V
Sbjct: 115 TETAFFVSV 123
>gi|329768386|ref|ZP_08259880.1| hypothetical protein HMPREF0428_01577 [Gemella haemolysans M341]
gi|328837139|gb|EGF86780.1| hypothetical protein HMPREF0428_01577 [Gemella haemolysans M341]
Length = 60
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI--DSPFEY 181
+YK ++Y+VE D+G+A+ D+ + I W +D +SEKD+ LP + D+ F+Y
Sbjct: 1 MYKCDNYYNVEADAGIAFDDEVLGIDWQ-IDLSKAIISEKDKKLPTFKEFEKDNDFKY 57
>gi|227829546|ref|YP_002831325.1| dTDP-4-dehydrorhamnose 3 5-epimerase-like protein [Sulfolobus
islandicus L.S.2.15]
gi|227455993|gb|ACP34680.1| dTDP-4-dehydrorhamnose 3 5-epimerase-like protein [Sulfolobus
islandicus L.S.2.15]
Length = 86
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
V ++K + F D+RG+F + + +++ + +Q N SFS G +RGLH+Q PP
Sbjct: 12 VILIKPKAFPDNRGYFKEIFKESEFRKMNIPTP-LQANVSFS-KPGVVRGLHYQLPP 66
>gi|167933030|ref|ZP_02520117.1| dTDP-4-dehydrorhamnose reductase [candidate division TM7
single-cell isolate TM7b]
Length = 76
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQ 59
++K D+RGWF + Y + ++ LGL VQ+N SF+ G RGLH +
Sbjct: 23 VVKLPVHGDNRGWFKENYQKEKMEALGLPSFDIVQNNISFNDKAGATRGLHAE 75
>gi|260892181|ref|YP_003238278.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ammonifex degensii KC4]
gi|260864322|gb|ACX51428.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ammonifex degensii KC4]
Length = 153
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 61/155 (39%), Gaps = 15/155 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDC--GTIRGLHFQR 60
I+ V++ K R D RG+ + S + F + ++ C G I+ H+ +
Sbjct: 4 IHGVQVKKLRLIPDDRGFLMECLRSDWPE-------FTKFGQAYVTACYPGVIKAWHYHK 56
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q CI G D R +SPT G I N I IP HGF +
Sbjct: 57 ---VQWDHFVCIYGMAKVALYDPREDSPTRGMVNVFHIGLLNPCLIKIPPRVYHGFTSEG 113
Query: 121 MNTEVIYKV-TDFYSVEH--DSGVAWQDKSIDITW 152
+I + T+ Y+ E + V + D SI +W
Sbjct: 114 GQLALILNIPTELYNYEEPDEYRVPYNDPSIPFSW 148
>gi|317502877|ref|ZP_07960976.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella salivae DSM
15606]
gi|315666013|gb|EFV05581.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella salivae DSM
15606]
Length = 85
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V I++ R F+D+RG+F + + + ++ + F+QDN S S G +RGLH+Q+
Sbjct: 7 DIKGVFIIEPRVFQDARGYFFEAWKDEEFQQKIGKIKFIQDNESKS-SYGVLRGLHYQKR 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGC 92
R+F + R GC
Sbjct: 66 -------------RVFSGKIGSRNQGKGLGC 83
>gi|326486449|gb|ADZ76277.1| putative nucleotide-sugar epimerase/dehydratase [Campylobacter
jejuni subsp. jejuni]
Length = 99
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT---DF 132
+ + VD R++SPTY W IS N I +P + YK+ ++
Sbjct: 1 MHQVVVDCRKDSPTYLKWEKFIISPRNQQLILLPPNMGNSHYVSSKEAVYYYKLAYEGEY 60
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
AW D+ I I WP T P +SE+D
Sbjct: 61 LDAPDQFTYAWNDERIAIDWP---TNSPILSERD 91
>gi|304389155|ref|ZP_07371190.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis ATCC
13091]
gi|304336887|gb|EFM03086.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis ATCC
13091]
Length = 66
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLH 57
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKS-GKGVLRGLH 66
>gi|227357100|ref|ZP_03841470.1| DTDP-6-deoxy-D-glucose-3,5-epimerase [Proteus mirabilis ATCC 29906]
gi|227162792|gb|EEI47755.1| DTDP-6-deoxy-D-glucose-3,5-epimerase [Proteus mirabilis ATCC 29906]
Length = 430
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+I +D R+NSPT+ +SLEI+ ++ + IP G AH F LE
Sbjct: 77 KILAKFIDCRKNSPTFKSELSLEITPSSARTLIIPPGVAHTFSHLE 122
>gi|197287206|ref|YP_002153078.1| DTDP-6-deoxy-D-glucose-3,5-epimerase [Proteus mirabilis HI4320]
gi|194684693|emb|CAR46656.1| putative DTDP-6-deoxy-D-glucose-3,5-epimerase [Proteus mirabilis
HI4320]
Length = 430
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+I +D R+NSPT+ +SLEI+ ++ + IP G AH F LE
Sbjct: 77 KILAKFIDCRKNSPTFKSELSLEITPSSARTLIIPPGVAHTFSHLE 122
>gi|126178136|ref|YP_001046101.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanoculleus marisnigri
JR1]
gi|125860930|gb|ABN56119.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanoculleus marisnigri
JR1]
Length = 158
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 8/122 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V I R D RGW + L + + + F Q + ++ G ++ H+ +
Sbjct: 4 TIDGVAIKNLRLIPDERGWLMEI----LRCDDAIFEKFGQVYCTTAYP-GVVKAWHYHK- 57
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q C+ G + D R +SPT G + + N + I +P G HGF +
Sbjct: 58 --KQTDNFTCVHGMMKVALYDAREDSPTRGNLMEFFVGEKNPILISVPPGVYHGFKGIGT 115
Query: 122 NT 123
T
Sbjct: 116 ET 117
>gi|169839060|ref|ZP_02872248.1| dTDP-4-dehydrorhamnose 3,5-epimerase [candidate division TM7
single-cell isolate TM7a]
Length = 33
Score = 41.2 bits (95), Expect = 0.086, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 109 PTGFAHGFMTLEMNTEVIYKVTDFYS 134
P GFAHGF+TLE TE YK TD Y+
Sbjct: 5 PEGFAHGFLTLEDETEFTYKCTDLYT 30
>gi|83589036|ref|YP_429045.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Moorella
thermoacetica ATCC 39073]
gi|83571950|gb|ABC18502.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein [Moorella
thermoacetica ATCC 39073]
Length = 151
Score = 40.8 bits (94), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++ K + D RG+F + L ++ + F Q + S S+ G I+ H+
Sbjct: 2 IAGVQVKKLVRHCDDRGFFMEI----LREDDEIFSRFGQASMSKSY-PGVIKAFHYHE-- 54
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q L G + D+R +SPT G + +N + + IP AHG+ L
Sbjct: 55 -HQDDLWFFPVGNAQVVLYDLREDSPTRGETNVFYLGEDNPILLLIPRMVAHGYRVLGNE 113
Query: 123 TE-VIYKVTDFYSVEH--DSGVAWQDKSIDITW 152
+IY T Y+ H + + W D +I W
Sbjct: 114 PAIIIYFTTASYNRSHPDEKRIPWDDPTIGFDW 146
>gi|15807713|ref|NP_285367.1| lipopolysaccharide biosynthesis protein [Deinococcus radiodurans
R1]
gi|6460560|gb|AAF12266.1|AE001862_92 lipopolysaccharide biosynthesis protein, putative [Deinococcus
radiodurans R1]
Length = 182
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q ++ + G++ VD R SPT G L S + ++IP+G AHG+ E
Sbjct: 89 QNEIWCVLQGQLTIWLVDCRAGSPTVGVKRKLVFSGEQPMMVHIPSGVAHGYQAGENGAT 148
Query: 125 VIYKVTDFYSVE 136
++Y + +++E
Sbjct: 149 LLYTMDAQFNIE 160
>gi|330368659|gb|AEC11781.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brachyspira hyodysenteriae]
gi|330368664|gb|AEC11785.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brachyspira hyodysenteriae]
gi|330368669|gb|AEC11789.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brachyspira hyodysenteriae]
gi|330368674|gb|AEC11793.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brachyspira hyodysenteriae]
Length = 68
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
YK +DFY E + G+ + DK+I+I W DT VS+KD LP ++ F DG
Sbjct: 8 YKCSDFYHPEEEGGIIYNDKNINIDW-TCDTKDVLVSDKDLKLPEFDKNKKYFSLDG 63
>gi|221632270|ref|YP_002521491.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermomicrobium roseum DSM
5159]
gi|221156733|gb|ACM05860.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermomicrobium roseum DSM
5159]
Length = 151
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPT 110
G IR H+ + Q CI G I D+R SPTY + +N + + IP
Sbjct: 45 GVIRAWHWHK---KQTDYFVCIRGMIKVPLFDLRPESPTYRELNEFFLGDDNRIVLKIPP 101
Query: 111 GFAHGFMTLEMNTEVIY 127
G AHGF + TE Y
Sbjct: 102 GVAHGFKNI--GTEPCY 116
>gi|163955190|ref|YP_001648294.1| hypothetical protein OsV5_218f [Ostreococcus virus OsV5]
gi|163638639|gb|ABY27998.1| hypothetical protein OsV5_218f [Ostreococcus virus OsV5]
Length = 393
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 14/117 (11%)
Query: 52 TIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTG 111
+RGLH PY K + G+IFD+ V + TY + + G + I
Sbjct: 34 VLRGLHCS--PYP--KFITVNNGKIFDVIV---KPDGTYDAY-----NLKKGDSLLIEPN 81
Query: 112 FAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
AHG+ E +E+IY + + ++ W D ++I WP + VS KD N
Sbjct: 82 CAHGYFCFEQ-SEIIYFLGGTFDASNEKNYLWNDPYLNIQWP-HEVKNAVVSMKDMN 136
>gi|282165386|ref|YP_003357771.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Methanocella
paludicola SANAE]
gi|282157700|dbj|BAI62788.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Methanocella
paludicola SANAE]
Length = 159
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPT 110
G ++G H+ + Q C+ G + + D R NSPT G I N +Q+ IP
Sbjct: 49 GVVKGWHYHK---KQFDNFVCVRGMMKVVLYDGRENSPTKGVINEFFIGERNPVQVQIPP 105
Query: 111 GFAHGFMTLEMNTEVIYKV-TDFY 133
HGF + +I V T+ Y
Sbjct: 106 YVYHGFKCVGTEEALIVNVPTEMY 129
>gi|315926854|gb|EFV06226.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni subsp.
jejuni DFVF1099]
Length = 109
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V I+ KF D RG ++ + L +L + + + + +RG+H
Sbjct: 13 LKGVYIITPNKFRDLRGEIWTAFTDEYLSKLVPDGIKFKHDKFINSHFNVLRGIHGDVKT 72
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTY 90
Y KLV C+ G + + VD R++SP +
Sbjct: 73 Y---KLVTCVYGEVHQVVVDCRKDSPNF 97
>gi|302895339|ref|XP_003046550.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256727477|gb|EEU40837.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 791
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP------FEYD 182
VTDF +E + G+ Q +I WPL T+ P V K NL ID+P FE D
Sbjct: 57 VTDFLELERERGITIQSAAITFNWPLQQTLPPGVHSKTINL-----IDTPGHQDFRFEVD 111
Query: 183 G-LPLL 187
LP+L
Sbjct: 112 RCLPIL 117
>gi|158318027|ref|YP_001510535.1| dTDP-4-dehydrorhamnose 35-epimerase related [Frankia sp. EAN1pec]
gi|158113432|gb|ABW15629.1| dTDP-4-dehydrorhamnose 35-epimerase related [Frankia sp. EAN1pec]
Length = 198
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 18/162 (11%)
Query: 18 RGWF-SQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRI 76
R WF Q + + LG V +H G +RG+ + R A K V C++G +
Sbjct: 35 RSWFDEQVVHTATGRPLGPVLANVTVSHQ-----GALRGIKYSRDGRA-GKYVSCLSGMV 88
Query: 77 FDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVE 136
D+ VD+R SPT+G + + +++ G H + L + Y
Sbjct: 89 LDVVVDLRVGSPTFGASHIRRLDGGQPVGLFLAPGLGHATLALTEQAAMAY-----LHPA 143
Query: 137 HDSG--VAWQ--DKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
HD G VA D + I WP + L +S+ D P L Q
Sbjct: 144 HDEGPEVAVHPFDSDLSIAWPSGLSFL--LSDGDTAAPTLGQ 183
>gi|282163187|ref|YP_003355572.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Methanocella
paludicola SANAE]
gi|282155501|dbj|BAI60589.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Methanocella
paludicola SANAE]
Length = 159
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPT 110
G ++G H+ + Y C+ G + D R NSPT G I N L + IP
Sbjct: 49 GVVKGWHYHKKQYDN---FVCVRGMMKVALFDSRDNSPTKGLLNEFFIGERNPLLVKIPP 105
Query: 111 GFAHGFMTLEMNTEVIYKV 129
HGF + N +I V
Sbjct: 106 YVYHGFKCIGTNEALIVNV 124
>gi|226329714|ref|ZP_03805232.1| hypothetical protein PROPEN_03626 [Proteus penneri ATCC 35198]
gi|225202900|gb|EEG85254.1| hypothetical protein PROPEN_03626 [Proteus penneri ATCC 35198]
Length = 264
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+I +D R+NSPT+ +S EI+ ++ + IP G AH F LE
Sbjct: 77 KILAKFIDCRKNSPTFKSELSFEITPSSARTLIIPPGVAHTFSYLE 122
>gi|110592087|gb|ABG77518.1| RfbC [Rhizobium leguminosarum bv. trifolii TA1]
Length = 166
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
D RG F++T+ ++ GL V+ Q N S + + GT+RG+H+Q P
Sbjct: 101 DDRGMFARTFDAQTSAAQGLVPVYPQCNVSQNRERGTLRGMHYQAQP 147
>gi|328951359|ref|YP_004368694.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Marinithermus
hydrothermalis DSM 14884]
gi|328451683|gb|AEB12584.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Marinithermus
hydrothermalis DSM 14884]
Length = 182
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 2/136 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDC-GTIRGLHFQR 60
I VR RK G F + K G F S S+ G I H
Sbjct: 26 EIAGVRFTPLRKHRALEGAFMEYLRLTGGKVEGFDTPFEVRQVSVSWAAPGRINAFHVH- 84
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q ++ + G + VD+R S T G +S +YIP+G AHG+
Sbjct: 85 PKEVQDEVWCVVEGTLLVWLVDVREGSSTRGVRRRYVLSGEEPGLLYIPSGVAHGYRAGP 144
Query: 121 MNTEVIYKVTDFYSVE 136
++Y + + ++ E
Sbjct: 145 EGAVLLYAMNNQFNPE 160
>gi|226357059|ref|YP_002786799.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Deinococcus deserti VCD115]
gi|226319049|gb|ACO47045.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Deinococcus deserti
VCD115]
Length = 179
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
I G++ VD R S T G L +S ++IP+G AHG+ E ++Y +
Sbjct: 92 VIQGQLMVWLVDCRAGSSTLGVRRKLVLSGEQPTMVHIPSGVAHGYQASEEGATLLYSMD 151
Query: 131 DFYSVE--HDSGVAW 143
+ ++ ++ +AW
Sbjct: 152 AQFDLDDPNEGRIAW 166
>gi|330506722|ref|YP_004383150.1| dTDP-4-dehydrorhamnose 3,5-epimerase-like protein [Methanosaeta
concilii GP-6]
gi|328927530|gb|AEB67332.1| dTDP-4-dehydrorhamnose 3,5-epimerase-related protein [Methanosaeta
concilii GP-6]
Length = 181
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 10/126 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQ--TYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + F D RG+ ++ + +K ++ + S+S+ G I+G H
Sbjct: 29 IEGVVIKDMKLFSDERGFLTELIRLDDEEMKASNIKQIIA----SYSYP-GMIKGWHLHS 83
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q + C+ G + D R +SPTY + + +YIP G HG +
Sbjct: 84 ---KQEDHLICVTGIVKVALYDYREDSPTYKFLNEIFMGEKCPRAVYIPPGVFHGTKNIG 140
Query: 121 MNTEVI 126
+ V+
Sbjct: 141 NDISVV 146
>gi|295695520|ref|YP_003588758.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus tusciae DSM
2912]
gi|295411122|gb|ADG05614.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus tusciae DSM
2912]
Length = 188
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 53/125 (42%), Gaps = 17/125 (13%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRG-- 55
I V+IL R F D G F++ L E G V Q N+S G ++
Sbjct: 33 IEGVQILDLRWFTDDGGAFTELAR---LDEQGCLAVLPEFQVRQVNYSVVL-PGAVKAWH 88
Query: 56 LHF-QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
LHF Q + VR + G + D+R +SPTY + + A +YIP G AH
Sbjct: 89 LHFNQEDVWFIPPTVRLLVGLL-----DVRASSPTYRNTMRFVMGAGKAQVLYIPRGVAH 143
Query: 115 GFMTL 119
G +
Sbjct: 144 GVANI 148
>gi|222056562|ref|YP_002538924.1| dTDP-4-dehydrorhamnose 3 5-epimerase and related enzymes-like
protein [Geobacter sp. FRC-32]
gi|221565851|gb|ACM21823.1| dTDP-4-dehydrorhamnose 3 5-epimerase and related enzymes-like
protein [Geobacter sp. FRC-32]
Length = 158
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 8/130 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V + K+ D RGW ++ Y S + E ++ + G RG H
Sbjct: 8 IHDVLVRPLTKYLDERGWLAELYRSDEIAE----EIMPVMAYISMTQPGVARGPHEH--- 60
Query: 63 YAQAKLVRCIAGRIFDIAV-DIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q I F I + D R+NSPTYG + + + + +P G H + + +
Sbjct: 61 VDQTDYFCFIGPSNFKIYLWDNRKNSPTYGVKQVIFAGQDVPMMMTVPPGVVHAYKNVGI 120
Query: 122 NTEVIYKVTD 131
+++ +
Sbjct: 121 GNGIVFNAPN 130
>gi|46121409|ref|XP_385259.1| hypothetical protein FG05083.1 [Gibberella zeae PH-1]
Length = 786
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP------FEYD 182
VTDF +E + G+ Q +I WPL ++ P K NL ID+P FE D
Sbjct: 52 VTDFLDLERERGITIQSAAITFNWPLHQSLAPGEHAKTINL-----IDTPGHQDFRFEVD 106
Query: 183 G-LPLL 187
LP+L
Sbjct: 107 RCLPIL 112
>gi|253996413|ref|YP_003048477.1| MalT-like ATP-dependent transcriptional regulator [Methylotenera
mobilis JLW8]
gi|253983092|gb|ACT47950.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
[Methylotenera mobilis JLW8]
Length = 274
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAW-QDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
LE+N+ ++Y V D S + V + ++ +DI P++D I+P + + + L Q+D
Sbjct: 127 LEINSLLVYAVRDQRSSDECLYVFFSKEYKLDINAPMMDFIMPHIDYILRKIKPLEQLDM 186
Query: 178 PFEYDGLPLLSLNMERDLLCV 198
E DG+ L SL+ ER++ +
Sbjct: 187 LAEADGVSLSSLS-EREIEVI 206
>gi|169840911|ref|ZP_02874024.1| hypothetical protein cdivTM_27428 [candidate division TM7
single-cell isolate TM7a]
Length = 30
Score = 35.4 bits (80), Expect = 4.7, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 130 TDFYSVEHDSGVAWQDKSIDITWPL 154
TD Y+ E+DSG+ W D++I+I W L
Sbjct: 6 TDLYAPEYDSGILWNDETINIDWKL 30
>gi|72143298|ref|XP_797590.1| PREDICTED: similar to jumonji domain containing 4
[Strongylocentrotus purpuratus]
gi|115925210|ref|XP_001182377.1| PREDICTED: similar to jumonji domain containing 4
[Strongylocentrotus purpuratus]
Length = 433
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 21/120 (17%)
Query: 50 CGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAV----DIRRNSPTYGCWVSLEISANNGLQ 105
CG R L + PP A+ L + +D+ D+ + + LE+ +G
Sbjct: 210 CGKKRWLFY--PPGAEDHLRDTLGNLAYDVTSPEIDDLTKYPHRHKAGEPLEVIQESGQV 267
Query: 106 IYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDK-SIDITWPLLDTILPSVSE 164
I++P+G+ H LE D S+ H+ W + ++DITW L + L +V +
Sbjct: 268 IFVPSGWHHQVFNLE----------DTISINHN----WLNGCNLDITWRFLQSELQAVQK 313
>gi|169841370|ref|ZP_02874483.1| hypothetical protein cdivTM_29733 [candidate division TM7
single-cell isolate TM7a]
Length = 39
Score = 35.0 bits (79), Expect = 6.1, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDK 146
TE YK TD Y+ E+DSG+ W D+
Sbjct: 15 TEFTYKCTDLYAPEYDSGILWNDE 38
>gi|262276655|ref|ZP_06054459.1| integral membrane protein DUF6 [alpha proteobacterium HIMB114]
gi|262278016|ref|ZP_06055809.1| integral membrane protein DUF6 [alpha proteobacterium HIMB114]
gi|262225119|gb|EEY75578.1| integral membrane protein DUF6 [alpha proteobacterium HIMB114]
gi|262225172|gb|EEY75620.1| integral membrane protein DUF6 [alpha proteobacterium HIMB114]
Length = 298
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 66/167 (39%), Gaps = 23/167 (13%)
Query: 12 RKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
KF + S T S LL +G+ +F QD +F + GT GL F A
Sbjct: 111 EKFIFKKPITSMTLSGALLGIIGIGIIFYQDFVNFDLNSGTTLGLMFALFATLSAS---- 166
Query: 72 IAGRIFDIAVDIRRN-----------SPTYGCWVSLEISANNGLQIYIPT---GFAHGFM 117
AG + IA+ +RN + YG V+L +S G + YIP + G
Sbjct: 167 -AGNL--IAIYNKRNYNIPLLQNVAFAMIYGALVALIVSFIKGAEFYIPINNFSYLLGLA 223
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSE 164
L +I + +E+ S A I + P+L I+ + E
Sbjct: 224 YLIFFGSIISFLCYIRFIENTS--ASTGGYIGVIMPILALIISMIFE 268
>gi|302413842|ref|XP_003004753.1| elongation factor G 2 [Verticillium albo-atrum VaMs.102]
gi|261355822|gb|EEY18250.1| elongation factor G 2 [Verticillium albo-atrum VaMs.102]
Length = 660
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
VTDF +E + G+ Q +I WPL + P K NL ID+P D
Sbjct: 20 VTDFLELERERGITIQSAAITFNWPLQEVCPPGSHPKTINL-----IDTPGHQD 68
>gi|315636138|ref|ZP_07891392.1| NAD-dependent DNA ligase LigA [Arcobacter butzleri JV22]
gi|315479499|gb|EFU70178.1| NAD-dependent DNA ligase LigA [Arcobacter butzleri JV22]
Length = 284
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 93 WVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVE 136
W E+ + NG +IY P+ F F E++ E+ KV DF +++
Sbjct: 65 WNGKELLSKNGNKIYAPSWFIQNFPPFELDGELYTKVNDFENIQ 108
Searching..................................................done
Results from round 2
>gi|254780919|ref|YP_003065332.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040596|gb|ACT57392.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 198
Score = 307 bits (788), Expect = 4e-82, Method: Composition-based stats.
Identities = 198/198 (100%), Positives = 198/198 (100%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR
Sbjct: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE
Sbjct: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE
Sbjct: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
Query: 181 YDGLPLLSLNMERDLLCV 198
YDGLPLLSLNMERDLLCV
Sbjct: 181 YDGLPLLSLNMERDLLCV 198
>gi|33637042|gb|AAQ23680.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geobacillus
stearothermophilus]
Length = 187
Score = 300 bits (768), Expect = 9e-80, Method: Composition-based stats.
Identities = 86/179 (48%), Positives = 114/179 (63%), Gaps = 3/179 (1%)
Query: 4 NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPY 63
V +++ + F D RG+F ++Y+ KL E GL F+QDNHS S GTIRGLH+Q P
Sbjct: 9 PGVWLIEPKVFGDHRGFFMESYNKKLFAEYGLDFDFIQDNHSLSRQAGTIRGLHYQLNPK 68
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
AQ KLVR G I+D+ VDIR+ SPT+G W +SA+N Q+ +P GFAHGF TL NT
Sbjct: 69 AQTKLVRVTRGAIYDVVVDIRKGSPTFGKWQGFILSADNKRQLLVPKGFAHGFCTLVENT 128
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
EV YKV ++YS EHD G+ W D ++ I WP T P +S+KD P L + FE++
Sbjct: 129 EVQYKVDEYYSPEHDRGILWNDPALGIDWP---TANPILSDKDTKHPLLADAEINFEWE 184
>gi|296505692|ref|YP_003667392.1| glucose-1-phosphate thymidylyltransferase [Bacillus thuringiensis
BMB171]
gi|296326744|gb|ADH09672.1| glucose-1-phosphate thymidylyltransferase [Bacillus thuringiensis
BMB171]
Length = 186
Score = 297 bits (762), Expect = 4e-79, Method: Composition-based stats.
Identities = 89/177 (50%), Positives = 117/177 (66%), Gaps = 2/177 (1%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V++++ + F D RGWF +T+S + ++E G+ FVQDN SFS GT+RGLH+Q P A
Sbjct: 10 GVKVIEPKVFGDHRGWFMETFSDQAMREAGIDLQFVQDNQSFSATKGTLRGLHYQLNPKA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRC G IFD+AVDIR+ SPTYG W +E+SA N Q+ IP GFAHGFMTL + E
Sbjct: 70 QTKLVRCTRGSIFDVAVDIRKGSPTYGQWFGIELSAENKKQLLIPKGFAHGFMTLTDDVE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
V YKV + Y+ E D G+ W D + I WP+ I P +SEKD+ P L + + F Y
Sbjct: 130 VQYKVDELYAPECDRGIIWNDAEVGIEWPME--IQPVLSEKDEKAPSLKEAEKNFVY 184
>gi|315122655|ref|YP_004063144.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496057|gb|ADR52656.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 199
Score = 296 bits (760), Expect = 8e-79, Method: Composition-based stats.
Identities = 144/196 (73%), Positives = 170/196 (86%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
INPVRILKT+ ED RGWFS+TY+ K+ G +DVFVQDNHSFS + GTIRGLHFQ+PP
Sbjct: 4 INPVRILKTKILEDDRGWFSETYNDNCFKKNGFKDVFVQDNHSFSLNTGTIRGLHFQKPP 63
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQAK+VRC++GRIFD+AVD+R++SPTYG W+SLEISA++GLQIYIP GFAHGFMTLE N
Sbjct: 64 HAQAKIVRCVSGRIFDVAVDVRKDSPTYGNWISLEISASSGLQIYIPIGFAHGFMTLEPN 123
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
TEVIYKVTDFYS HDSGV WQDKSI I WPLL+ + PS+S+KD NLPFLNQ+DSPF YD
Sbjct: 124 TEVIYKVTDFYSSSHDSGVLWQDKSIGIRWPLLEKVSPSLSDKDMNLPFLNQLDSPFTYD 183
Query: 183 GLPLLSLNMERDLLCV 198
G PLL L+M+RD+ CV
Sbjct: 184 GFPLLPLDMDRDMSCV 199
>gi|222099006|ref|YP_002533574.1| Putative dTDP-6-deoxy-D-glucose-3,5-epimerase [Thermotoga
neapolitana DSM 4359]
gi|221571396|gb|ACM22208.1| Putative dTDP-6-deoxy-D-glucose-3,5-epimerase [Thermotoga
neapolitana DSM 4359]
Length = 188
Score = 296 bits (759), Expect = 9e-79, Method: Composition-based stats.
Identities = 93/182 (51%), Positives = 122/182 (67%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V I++ R FED RGWF ++YS ++ KELG+ VFVQDNHS+S GT+RG+HFQ
Sbjct: 7 DLPGVLIIEPRVFEDERGWFMESYSYRVFKELGIDAVFVQDNHSYSKRKGTLRGIHFQNN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKLVRC G+I D+AVD+R+ SPTY W+ +E+S N ++IP GF H F+TL
Sbjct: 67 PVAQAKLVRCTRGKILDVAVDLRKGSPTYKKWIMVELSEENKRMLFIPKGFGHAFLTLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ EV YKV +YS EHD + W D I I WP+ + P +SEKD+N PFL D F Y
Sbjct: 127 DVEVQYKVDQYYSKEHDRSIRWNDPDIGIDWPIEE---PILSEKDRNAPFLKDSDCNFVY 183
Query: 182 DG 183
G
Sbjct: 184 GG 185
>gi|228961527|ref|ZP_04123137.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228798145|gb|EEM45148.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar pakistani str. T13001]
Length = 186
Score = 295 bits (757), Expect = 2e-78, Method: Composition-based stats.
Identities = 88/177 (49%), Positives = 119/177 (67%), Gaps = 2/177 (1%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V++++ + F D RGWF +T+S + ++E G+ FVQDN SFS GT+RGLH+Q P A
Sbjct: 10 GVKVIEPKVFGDHRGWFMETFSDQAMREAGIDLKFVQDNQSFSATKGTLRGLHYQLNPKA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRC G IFD+AVDIR+ SPTYG W +E+SA N Q+ IP GFAHGFMTL + E
Sbjct: 70 QTKLVRCTRGSIFDVAVDIRKGSPTYGQWFGIELSAENKKQLLIPKGFAHGFMTLTDDVE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
V YKV + Y+ E+D G+ W D + + WP+ I P +SEKD+ P L + ++ F Y
Sbjct: 130 VQYKVDELYAPEYDRGIIWNDAEVGVEWPME--IQPVLSEKDEKAPSLKEAENNFVY 184
>gi|254500091|ref|ZP_05112243.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Labrenzia alexandrii DFL-11]
gi|222441389|gb|EEE48067.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Labrenzia alexandrii DFL-11]
Length = 192
Score = 295 bits (757), Expect = 2e-78, Method: Composition-based stats.
Identities = 101/187 (54%), Positives = 135/187 (72%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V ++ R+F D RGWF+++Y+ + L+ LG+ FVQDNHS S GT+RGLHFQ PP+AQ
Sbjct: 5 VTLIHPRRFGDDRGWFTESYNKQKLEPLGITCDFVQDNHSLSVPTGTLRGLHFQTPPFAQ 64
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVRCI G++FD+AVDIR+ SPTYG WV +E+SA NG Q+ +P G+AHGF+TLE NTEV
Sbjct: 65 DKLVRCIRGKVFDVAVDIRKGSPTYGKWVGVELSAENGDQLLVPAGYAHGFVTLEDNTEV 124
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLP 185
YKV+++YS ++D+G+ W D I I WPL P +S KD P L DSPF+YDG P
Sbjct: 125 TYKVSNYYSPQNDAGLMWDDADIGIDWPLAAGAEPILSGKDTQHPGLADFDSPFDYDGTP 184
Query: 186 LLSLNME 192
+ + +E
Sbjct: 185 MTLVEIE 191
>gi|229106721|ref|ZP_04236952.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock3-28]
gi|228676719|gb|EEL31334.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock3-28]
Length = 185
Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats.
Identities = 85/180 (47%), Positives = 118/180 (65%), Gaps = 3/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ ++ +LGL F+QDN S S GT+RGLHFQ
Sbjct: 7 KIPDVVILEPKVFGDHRGYFMESYNKEIFNKLGLDYEFIQDNQSLSVPAGTLRGLHFQLN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ K+VRCI G I+D+AVDIR+ SPTYG W+ + +S +N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKIVRCITGAIYDVAVDIRKGSPTYGQWIGVILSEHNKRQLVVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N+ V YKV ++YS HD+G+ W D ++ I WP+ + P +SEKD P L + + F Y
Sbjct: 127 NSTVAYKVDEYYSPNHDAGILWNDPALGIDWPVSE---PILSEKDTKHPLLEEANINFVY 183
>gi|325295548|ref|YP_004282062.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065996|gb|ADY74003.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 192
Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats.
Identities = 90/182 (49%), Positives = 116/182 (63%), Gaps = 4/182 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I+K + F D RG+F +TY ++ G+ FVQDNHS S G +RGLH+Q
Sbjct: 9 EIPEVVIVKPKVFGDERGFFMETYKKSDFEKAGIDTDFVQDNHSKSVK-GVLRGLHYQLE 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVRCI G++FD+AVDIR+ SPT+G WV +E+S+ N L ++IP GFAHGF+TL
Sbjct: 68 PKAQGKLVRCIKGKVFDVAVDIRKGSPTFGKWVGVELSSENKLMLWIPKGFAHGFLTLSE 127
Query: 122 NTEVIYKVTD-FYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
E+IYKV+ YS EHD + W D I I WPL P +SEKD+ PFL + F
Sbjct: 128 EAEIIYKVSGSEYSPEHDRSIRWNDPDIGIEWPLDGE--PILSEKDKLAPFLKDAEINFV 185
Query: 181 YD 182
Y
Sbjct: 186 YK 187
>gi|229175942|ref|ZP_04303439.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus MM3]
gi|228607536|gb|EEK64861.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus MM3]
Length = 185
Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats.
Identities = 86/181 (47%), Positives = 118/181 (65%), Gaps = 3/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ F D RG+F ++Y+ +LGL+ F+QDN S S GT+RGLHFQ
Sbjct: 7 KIPDVLILEPNVFGDHRGYFMESYNKDAFDKLGLKYEFIQDNQSLSVPVGTLRGLHFQLN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ K+VRCI G I+D+AVDIR+ SPTYG W+ + +S +N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKVVRCITGAIYDVAVDIRKGSPTYGQWIGVILSEHNKRQLVVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N+ V YKV ++YS EHDSG+ W D ++ I WP+ + P +S+KD P L + + F Y
Sbjct: 127 NSTVAYKVDEYYSPEHDSGILWNDPALGIDWPVSN---PILSDKDNKHPMLEEANINFVY 183
Query: 182 D 182
+
Sbjct: 184 E 184
>gi|170288107|ref|YP_001738345.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermotoga sp. RQ2]
gi|33413323|emb|CAD67948.1| putative dTDP-6-deoxy-D-glucose-3,5-epimerase [Thermotoga sp. RQ2]
gi|170175610|gb|ACB08662.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermotoga sp. RQ2]
Length = 188
Score = 291 bits (747), Expect = 3e-77, Method: Composition-based stats.
Identities = 94/180 (52%), Positives = 120/180 (66%), Gaps = 3/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I++ R FED RGWF ++YS ++ KELG+ VFVQDNHS+S GT+RG+HFQ
Sbjct: 7 ELPEVLIIEPRVFEDERGWFMESYSYRVFKELGIDVVFVQDNHSYSKKKGTLRGIHFQND 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ+KLVRC GRI D+AVD+R+ SPTY W+ LE+S N ++IP GF H F+TL
Sbjct: 67 PMAQSKLVRCTRGRILDVAVDLRKGSPTYKKWIMLELSEENKRMLFIPRGFGHAFLTLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ EV YKV +YS EHD + W D I I WP+ D P +SEKD+N PFL D F Y
Sbjct: 127 DVEVQYKVDQYYSKEHDRSIRWNDPDIGIDWPIKD---PILSEKDRNAPFLKDSDCNFIY 183
>gi|169342322|ref|ZP_02863393.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens C
str. JGS1495]
gi|169299547|gb|EDS81610.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens C
str. JGS1495]
Length = 189
Score = 291 bits (746), Expect = 3e-77, Method: Composition-based stats.
Identities = 83/182 (45%), Positives = 113/182 (62%), Gaps = 2/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ + F D RG+F +TYS K +E GL FVQDN S S G +RGLHFQ
Sbjct: 10 KIKDLYIIEPKVFGDERGYFMETYSQKAFEEAGLTMKFVQDNESKS-KKGVLRGLHFQTK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G ++D+AVD+R+ SPT+G W + +SA N Q Y+P GFAHGF+ L
Sbjct: 69 -HTQGKLVRVTQGEVWDVAVDLRKGSPTFGQWEGVHLSAENKRQFYVPEGFAHGFVVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK TDFY+ E+DSG+ W DK +++ WPL +SEKD+ L ++D PF Y
Sbjct: 128 EAVFNYKCTDFYAPEYDSGLLWNDKDVNVEWPLEGIEEIILSEKDKKQKTLKELDIPFVY 187
Query: 182 DG 183
+G
Sbjct: 188 EG 189
>gi|168212616|ref|ZP_02638241.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens CPE
str. F4969]
gi|168216436|ref|ZP_02642061.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens NCTC
8239]
gi|182625737|ref|ZP_02953505.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens D
str. JGS1721]
gi|170715658|gb|EDT27840.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens CPE
str. F4969]
gi|177908999|gb|EDT71481.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens D
str. JGS1721]
gi|182381550|gb|EDT79029.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens NCTC
8239]
Length = 189
Score = 291 bits (746), Expect = 4e-77, Method: Composition-based stats.
Identities = 83/182 (45%), Positives = 113/182 (62%), Gaps = 2/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ + F D RG+F +TYS K +E GL FVQDN S S G +RGLHFQ
Sbjct: 10 KIKDLYIIEPKVFGDERGYFMETYSQKAFEEAGLTMKFVQDNESKS-KKGVLRGLHFQTK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G ++D+AVD+R+ SPT+G W + +SA N Q Y+P GFAHGF+ L
Sbjct: 69 -HTQGKLVRVTQGEVWDVAVDLRKGSPTFGQWEGVHLSAENKRQFYVPEGFAHGFVVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK TDFY+ E+DSG+ W DK +++ WPL +SEKD+ L ++D PF Y
Sbjct: 128 EAVFNYKCTDFYAPEYDSGLLWNDKDVNVEWPLEGIEEIILSEKDKKQKTLKELDIPFIY 187
Query: 182 DG 183
+G
Sbjct: 188 EG 189
>gi|33637049|gb|AAQ23686.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geobacillus
stearothermophilus]
Length = 190
Score = 291 bits (746), Expect = 4e-77, Method: Composition-based stats.
Identities = 82/181 (45%), Positives = 115/181 (63%), Gaps = 3/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ I + ++D RG+F ++Y+ ++ ++LG FVQDNHS S GTIRGLH+Q
Sbjct: 10 ELDGAVIFEPIVYKDERGFFMESYNEQIFRKLGFDVRFVQDNHSLSVKAGTIRGLHYQLN 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVR G I+D+ VDIR+ SPT+G W +S +N Q+ +P GFAHGF TL
Sbjct: 70 PKAQTKLVRVTRGAIYDVIVDIRKGSPTFGKWKGFILSEDNKRQLLVPKGFAHGFCTLVE 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
NTEV YKV ++YS EHD G+ W D ++ I WP+ + P +SEKD N P L + F +
Sbjct: 130 NTEVQYKVDEYYSPEHDRGILWNDPALSIDWPVTN---PILSEKDANHPLLADAEINFVW 186
Query: 182 D 182
+
Sbjct: 187 E 187
>gi|110799633|ref|YP_695051.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens ATCC
13124]
gi|110800202|ref|YP_694935.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens ATCC
13124]
gi|168211917|ref|ZP_02637542.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens B
str. ATCC 3626]
gi|110674280|gb|ABG83267.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens ATCC
13124]
gi|110674849|gb|ABG83836.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens ATCC
13124]
gi|170710141|gb|EDT22323.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens B
str. ATCC 3626]
Length = 189
Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats.
Identities = 83/182 (45%), Positives = 113/182 (62%), Gaps = 2/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ + F D RG+F +TYS K +E GL FVQDN S S G +RGLHFQ
Sbjct: 10 KIKDLYIIEPKVFGDERGYFMETYSQKAFEEAGLTMKFVQDNESKS-KKGVLRGLHFQTK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G ++D+AVD+R+ SPT+G W + +SA N Q Y+P GFAHGF+ L
Sbjct: 69 -HTQGKLVRVTQGEVWDVAVDLRKGSPTFGQWEGVHLSAENKRQFYVPEGFAHGFVVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK TDFY+ E+DSG+ W DK +++ WPL +SEKD+ L ++D PF Y
Sbjct: 128 EAVFNYKCTDFYAPEYDSGLLWNDKYVNVEWPLEGIEEIILSEKDKKQKTLKELDIPFIY 187
Query: 182 DG 183
+G
Sbjct: 188 EG 189
>gi|83955938|ref|ZP_00964449.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfitobacter sp. NAS-14.1]
gi|83839702|gb|EAP78880.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfitobacter sp. NAS-14.1]
Length = 198
Score = 288 bits (738), Expect = 3e-76, Method: Composition-based stats.
Identities = 97/189 (51%), Positives = 125/189 (66%), Gaps = 6/189 (3%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M I V I+ +F D RG+FS++YS+K L E G+ FVQDNHS S GTIRG
Sbjct: 11 MKIEQTPLPGVIIITPARFGDHRGFFSESYSAKALAEHGITTQFVQDNHSLSMTQGTIRG 70
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LHFQ PP+AQ KLVRC G +FD+AVDIR+ SPTYG W +E+S NG Q+ +P GFAHG
Sbjct: 71 LHFQVPPHAQDKLVRCGRGALFDVAVDIRKGSPTYGQWFGVELSFENGKQLLVPAGFAHG 130
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F+T TE+IYK +D+Y+ E + VAW D + I W L I P +SEKD N P L +
Sbjct: 131 FVTRAPETEIIYKCSDYYAQETEGAVAWDDPQVGIDWGL-GEIAPVLSEKDANAPSLAAL 189
Query: 176 DSPFEYDGL 184
+SPF ++G+
Sbjct: 190 NSPFTFEGV 198
>gi|317130378|ref|YP_004096660.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cellulosilyticus DSM
2522]
gi|315475326|gb|ADU31929.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cellulosilyticus DSM
2522]
Length = 226
Score = 287 bits (736), Expect = 5e-76, Method: Composition-based stats.
Identities = 81/180 (45%), Positives = 117/180 (65%), Gaps = 3/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I++ + F D+RG+F ++Y+ + +++GL+ +QDNHS S + G +RGLH+Q
Sbjct: 46 KLEGVVIIEPKVFGDNRGFFMESYNQEKFQQVGLKYKLIQDNHSLSVEPGVLRGLHYQLN 105
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ K+VR G I+D+ VDIR+ SPT+G W+ +S +N QI +P GFAHGF TL
Sbjct: 106 PKAQTKIVRVATGAIYDVVVDIRKESPTFGEWIGAILSEHNKRQIVVPKGFAHGFCTLVP 165
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
NT V+YKV ++YS EHD G+ W D I I WP+ + P +SEKD+ P L D F+Y
Sbjct: 166 NTNVLYKVDEYYSKEHDRGILWNDPDIGIEWPICN---PILSEKDKVHPPLTGADINFQY 222
>gi|304407809|ref|ZP_07389460.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus curdlanolyticus
YK9]
gi|304343292|gb|EFM09135.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus curdlanolyticus
YK9]
Length = 185
Score = 287 bits (736), Expect = 5e-76, Method: Composition-based stats.
Identities = 86/182 (47%), Positives = 117/182 (64%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V++++T F D RG+F+++YS + E G+ FVQDNHS S + G +RG+H+Q
Sbjct: 7 KLSGVKLIETAVFGDHRGFFTESYSEQRFVENGITHRFVQDNHSLSAEAGVLRGMHYQLN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVR AG I+D+ VDIRR SPT+G W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLVRVTAGAIYDVVVDIRRGSPTFGQWQGFILSADNKRQLLVPQGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N EV YKV ++YS E+D G+AW D ++ I WP T P +S KD P L D F+Y
Sbjct: 127 NCEVQYKVDEYYSPENDRGIAWNDPALAIDWP---TNYPILSNKDGKHPVLADADINFDY 183
Query: 182 DG 183
G
Sbjct: 184 KG 185
>gi|295400933|ref|ZP_06810908.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geobacillus
thermoglucosidasius C56-YS93]
gi|294976935|gb|EFG52538.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geobacillus
thermoglucosidasius C56-YS93]
Length = 183
Score = 286 bits (734), Expect = 8e-76, Method: Composition-based stats.
Identities = 86/178 (48%), Positives = 116/178 (65%), Gaps = 3/178 (1%)
Query: 4 NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPY 63
+++ + F D RG+F ++Y+ K+ KELG FVQDNHS S + GT+RGLH+Q PY
Sbjct: 9 KDAFLIEPKVFSDHRGFFMESYNDKVFKELGFNYEFVQDNHSLSVEVGTLRGLHYQLEPY 68
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
AQ KLVR I G ++D+ VDIR+ SPTYG W +S N Q+ +P GFAHGF T+ NT
Sbjct: 69 AQTKLVRVIRGAVYDVIVDIRKGSPTYGKWQGFILSEWNKRQLLVPKGFAHGFCTIVPNT 128
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
EV+YKV ++YS EHD G+ W D ++I WP T P +SEKD P L + ++ F Y
Sbjct: 129 EVLYKVDNYYSPEHDRGICWNDPDLNIDWP---TNSPILSEKDSKHPRLVEAENNFTY 183
>gi|295397282|ref|ZP_06807377.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aerococcus viridans ATCC
11563]
gi|294974488|gb|EFG50220.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aerococcus viridans ATCC
11563]
Length = 183
Score = 286 bits (732), Expect = 1e-75, Method: Composition-based stats.
Identities = 87/180 (48%), Positives = 120/180 (66%), Gaps = 3/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V I++ + F D RGWF++TYS + KE G+ F+QDNHS S GT+RGLHFQ
Sbjct: 7 DIEDVIIIEPKVFGDHRGWFTETYSKEKFKEFGIDIDFIQDNHSLSAQKGTLRGLHFQLN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVRC G+I D+AVDIR SPTY WV++E++ N Q+ +P GFAHGF+TL
Sbjct: 67 PKAQTKLVRCTKGKILDVAVDIREGSPTYKKWVAVELTEENKKQLLVPKGFAHGFITLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N EV YKV ++YS E+D + + D I++ W + P +SEKD + P L++ D+ F+Y
Sbjct: 127 NVEVQYKVDEYYSPENDRSIRFDDPEINVDWGIDS---PILSEKDLSAPMLSESDANFKY 183
>gi|315649766|ref|ZP_07902849.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus vortex V453]
gi|315274740|gb|EFU38121.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus vortex V453]
Length = 182
Score = 285 bits (731), Expect = 2e-75, Method: Composition-based stats.
Identities = 76/180 (42%), Positives = 119/180 (66%), Gaps = 3/180 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+++N +++ + D RG+F ++Y+ L K+ G+ F+QDN S S + G +RGLH+Q
Sbjct: 6 LSLNDALLIEPKVHGDHRGFFMESYNDSLFKQHGITYNFIQDNQSLSAEAGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KL+R + G I+D+ VDIR++SPT+G WV + +S +N Q+ +P GFAHGF TL
Sbjct: 66 NPKAQTKLIRVLTGAIYDVIVDIRKSSPTFGKWVGVILSEHNHRQLLVPKGFAHGFCTLV 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NT+V+YKV ++YS E+D G+ W+D ++ I WP + P +S+KDQ P L + F+
Sbjct: 126 PNTQVLYKVDEYYSPENDRGILWKDPALGIDWPTSN---PILSDKDQQHPLLKDAEMNFD 182
>gi|122934725|gb|ABM68330.1| RmlC [Geobacillus tepidamans]
Length = 183
Score = 285 bits (731), Expect = 2e-75, Method: Composition-based stats.
Identities = 87/186 (46%), Positives = 116/186 (62%), Gaps = 8/186 (4%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M I +++ + F D RG+F ++Y+ ++ KELG FVQDNHS S + GT+RG
Sbjct: 1 MKIIETRFKDAFLIEPKVFGDHRGFFMESYNDQVFKELGFNYEFVQDNHSLSIEVGTLRG 60
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q PYAQ KLVR I G I+D+ VDIR+ S TYG W +S N Q+ +P GFAHG
Sbjct: 61 LHYQLEPYAQTKLVRVIRGAIYDVIVDIRKGSLTYGKWQGFILSEGNKRQLLVPKGFAHG 120
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F T+ NTEV+YKV ++YS EHD G+ W D + I WP T P +SEKD P L +
Sbjct: 121 FCTIVPNTEVLYKVDNYYSPEHDRGICWNDPDLKIDWP---THSPILSEKDSKHPRLAEA 177
Query: 176 DSPFEY 181
++ F Y
Sbjct: 178 ENNFIY 183
>gi|251798955|ref|YP_003013686.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. JDR-2]
gi|247546581|gb|ACT03600.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. JDR-2]
Length = 182
Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats.
Identities = 83/181 (45%), Positives = 115/181 (63%), Gaps = 3/181 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V++L+ + D RG+F+++Y+ K +E G+ FVQDNHS S + G +RG+H+Q P
Sbjct: 5 LPGVKLLEPPVYGDHRGFFTESYNEKTARENGILHAFVQDNHSLSVEAGVLRGMHYQLQP 64
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLVR AG I+D+ VDIRR SPT+G W +SA N Q+ +P GFAHGF TL +
Sbjct: 65 KAQTKLVRVTAGAIYDVVVDIRRGSPTFGQWQGFILSAANKRQLLVPQGFAHGFCTLVPS 124
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
EV YKV Y+ EHD G+AW D ++ I WP+ P +S+KD P L Q + F Y+
Sbjct: 125 CEVQYKVDALYAAEHDRGIAWNDPALGIDWPVTK---PILSDKDAKHPVLAQAEINFVYE 181
Query: 183 G 183
G
Sbjct: 182 G 182
>gi|328765894|gb|EGF75990.1| hypothetical protein BATDEDRAFT_15110 [Batrachochytrium
dendrobatidis JAM81]
Length = 191
Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats.
Identities = 85/180 (47%), Positives = 118/180 (65%), Gaps = 3/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N+ V+I++ + F+D+RG+F ++++ + +LG F+QDNHS S D IRGLHFQ
Sbjct: 7 NLQDVKIIEPKVFKDNRGYFMESFNQQTFADLGNNYYFIQDNHSLSLDKDVIRGLHFQLS 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVR I G I+D+AVDIR+ SPT+G WV + +S N + +P GFAHGF TL
Sbjct: 67 PKAQTKLVRVITGAIYDVAVDIRKGSPTFGSWVGVTLSEENHRMLLVPKGFAHGFCTLTE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
NT V YKV +YS E+D G+ W D ++ I WP T P +SEKD++ P LN + F+Y
Sbjct: 127 NTHVQYKVDAYYSSENDKGIRWNDPTLAIDWP---TSKPILSEKDRHQPLLNDAELYFQY 183
>gi|329929651|ref|ZP_08283348.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. HGF5]
gi|328935977|gb|EGG32432.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. HGF5]
Length = 182
Score = 284 bits (728), Expect = 4e-75, Method: Composition-based stats.
Identities = 79/180 (43%), Positives = 118/180 (65%), Gaps = 3/180 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+++N I++ + DSRG+F ++Y+ L K+ G+ F+QDNHS S + G +RGLH+Q
Sbjct: 6 LSLNGAAIIEPKVHGDSRGFFMESYNESLFKQNGITYNFIQDNHSLSAEPGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KL+R + G I+D+ VDIR++S T+G W + +S +N Q+ +P GFAHGF TL
Sbjct: 66 HPKAQTKLIRVLTGAIYDVIVDIRKSSSTFGQWYGVILSEHNHRQLLVPKGFAHGFCTLV 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NT+V+YKV ++YS E+D G+ W D ++ I WP T P +S+KDQ P L + FE
Sbjct: 126 PNTQVLYKVDEYYSPENDRGILWNDPALGIDWP---TSSPILSDKDQRHPLLKDAEMNFE 182
>gi|84515472|ref|ZP_01002834.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Loktanella vestfoldensis
SKA53]
gi|84510755|gb|EAQ07210.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Loktanella vestfoldensis
SKA53]
Length = 200
Score = 284 bits (728), Expect = 5e-75, Method: Composition-based stats.
Identities = 92/182 (50%), Positives = 121/182 (66%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V IL +F D+RG+FS++++ K L G+ FVQDNHS S GTIRGLHFQ P
Sbjct: 19 KLAGVLILSPARFGDARGFFSESWNRKTLAAQGITLDFVQDNHSLSAQIGTIRGLHFQSP 78
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQAKLVRC G +FD+AVDIRR+SPTYG W+ E+S NG Q+ IP GF HGF+T
Sbjct: 79 PHAQAKLVRCGRGCLFDVAVDIRRDSPTYGQWLGEELSDQNGRQLLIPAGFLHGFITRAP 138
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+TE+IYK TD+Y+ D V + D I I W L + P +S+KD P L +D+PF +
Sbjct: 139 DTEIIYKCTDYYAPACDGAVRFDDPDIGIDWGLPAGVAPILSDKDAAAPLLRDLDTPFVF 198
Query: 182 DG 183
+G
Sbjct: 199 EG 200
>gi|195953910|ref|YP_002122200.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hydrogenobaculum sp. Y04AAS1]
gi|195933522|gb|ACG58222.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hydrogenobaculum sp. Y04AAS1]
Length = 190
Score = 284 bits (727), Expect = 6e-75, Method: Composition-based stats.
Identities = 95/183 (51%), Positives = 129/183 (70%), Gaps = 2/183 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V ++K + F+D RG+F ++Y ++ G+ D+F+QDNHS S G +RGLH+Q+
Sbjct: 9 DIKEVILIKPKVFKDERGFFLESYKKSEFEKNGITDIFIQDNHSKSVK-GVLRGLHYQKE 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVRCI G+IFD+AVDIR+NSPTYG WV E+S N L ++IP GFAHGF+TL
Sbjct: 68 PEAQGKLVRCIKGKIFDVAVDIRKNSPTYGRWVGYELSEENKLMLFIPKGFAHGFLTLSE 127
Query: 122 NTEVIYKVTD-FYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
E+IYKV++ YS EHD G+ W DK+I+I WPL + +S+KD+NLP L Q D+ F
Sbjct: 128 EAEIIYKVSEAEYSKEHDKGIIWNDKTINIKWPLENIKEVILSDKDKNLPTLEQADNNFL 187
Query: 181 YDG 183
Y G
Sbjct: 188 YGG 190
>gi|218288134|ref|ZP_03492433.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alicyclobacillus
acidocaldarius LAA1]
gi|218241493|gb|EED08666.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alicyclobacillus
acidocaldarius LAA1]
Length = 181
Score = 283 bits (726), Expect = 7e-75, Method: Composition-based stats.
Identities = 84/178 (47%), Positives = 117/178 (65%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V +++ FED+RG+F+++Y+ + LG+ FVQDNHS+S GT+RGLH+Q
Sbjct: 7 DIEGVFLIEPDVFEDARGFFTESYNREKFALLGIDVEFVQDNHSYSAAAGTVRGLHYQLE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVR + G I+D+ VDIRR+SPT+G WV + +SA+N Q+Y+P GFAHGF TL
Sbjct: 67 PAAQTKLVRVVQGAIYDVVVDIRRHSPTFGRWVGVILSADNRRQLYVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV +YS EHD G+ W D + I WP T +SEKD P + + F
Sbjct: 127 HTHVMYKVDTYYSPEHDRGIRWDDPELGIPWP---TTKAVLSEKDAKHPGFREAEINF 181
>gi|160935035|ref|ZP_02082421.1| hypothetical protein CLOLEP_03911 [Clostridium leptum DSM 753]
gi|156866488|gb|EDO59860.1| hypothetical protein CLOLEP_03911 [Clostridium leptum DSM 753]
Length = 189
Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats.
Identities = 78/182 (42%), Positives = 109/182 (59%), Gaps = 2/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + +++ + F D+RG+F +TY+ K GL VFVQDN S S G +RGLHFQ+
Sbjct: 10 GIEGLVVVEPKVFGDNRGYFMETYNYNDFKAAGLDMVFVQDNQSKS-KKGVLRGLHFQKK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR ++G ++D+AVD+RR S TYG W + +SA N Q Y+P GFAHGF+ +
Sbjct: 69 NP-QGKLVRVVSGEVYDVAVDLRRGSDTYGKWYGVLLSAENKKQFYVPEGFAHGFVVMSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
E +YK T FY + G+ W D I I WP+ + +SEKDQ+ L +SPF
Sbjct: 128 TAEFVYKCTRFYDPSDEGGLMWNDPEIGIDWPVPENAELLLSEKDQHHQPLKDFESPFTM 187
Query: 182 DG 183
+G
Sbjct: 188 EG 189
>gi|116754265|ref|YP_843383.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanosaeta thermophila PT]
gi|116665716|gb|ABK14743.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanosaeta thermophila PT]
Length = 187
Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats.
Identities = 87/183 (47%), Positives = 115/183 (62%), Gaps = 4/183 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V +++ R F D RG+F ++Y G+++ FVQDNHS S G +RGLH+Q
Sbjct: 8 LDIYDVILIEPRVFRDERGFFMESYKHSEFAAFGIKERFVQDNHSRS-RRGVLRGLHYQN 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP AQ KLVR ++G IFD+AVDIRR SPTYG WV + +S N +YIP GFAHGFMTL
Sbjct: 67 PPRAQGKLVRAVSGEIFDVAVDIRRGSPTYGRWVGVNLSEENMRMLYIPPGFAHGFMTLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+V+YK TD YS EH++G+ W D I I WP P +S +D P L + F
Sbjct: 127 DVADVMYKTTDEYSPEHEAGIIWNDPGIGIEWP---ASRPVLSPRDAKWPGLRDAVNGFV 183
Query: 181 YDG 183
Y+G
Sbjct: 184 YEG 186
>gi|167755094|ref|ZP_02427221.1| hypothetical protein CLORAM_00598 [Clostridium ramosum DSM 1402]
gi|237733479|ref|ZP_04563960.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mollicutes bacterium D7]
gi|167705144|gb|EDS19723.1| hypothetical protein CLORAM_00598 [Clostridium ramosum DSM 1402]
gi|229383514|gb|EEO33605.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coprobacillus sp. D7]
Length = 191
Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats.
Identities = 90/183 (49%), Positives = 122/183 (66%), Gaps = 1/183 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ D RG+F +TYS+ ELG+ +VFVQDN SF+ GT+RGLHFQ
Sbjct: 7 KIPGVVIIEPDIHGDHRGYFMETYSTSNFHELGIDNVFVQDNMSFTAKKGTLRGLHFQND 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKLV C G + D+AVDIR+ SPTY WV++E+S N +IP GFAHGF+TL
Sbjct: 67 PMAQAKLVSCTKGTVIDVAVDIRKGSPTYKQWVAVELSEENKKMFFIPRGFAHGFLTLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW-PLLDTILPSVSEKDQNLPFLNQIDSPFE 180
N E YKV + YS EHD G+ + D S+++ W LL+ I P +S+KD+N P L++ D F+
Sbjct: 127 NVEFRYKVDNLYSKEHDRGIRYDDPSVNVDWGGLLNGIEPILSDKDKNGPTLDESDCNFK 186
Query: 181 YDG 183
++G
Sbjct: 187 FEG 189
>gi|218290277|ref|ZP_03494423.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alicyclobacillus
acidocaldarius LAA1]
gi|218239632|gb|EED06824.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alicyclobacillus
acidocaldarius LAA1]
Length = 181
Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats.
Identities = 84/178 (47%), Positives = 116/178 (65%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V +++ FED+RG+F+++Y+ + LG+ FVQDNHS+S GT+RGLH+Q
Sbjct: 7 DIQGVFLIEPDVFEDARGFFTESYNREKFALLGVDVEFVQDNHSYSAAAGTVRGLHYQLE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVR + G I+D+ VDIRR SPT+G WV + +SA+N Q+Y+P GFAHGF TL
Sbjct: 67 PAAQTKLVRVVQGAIYDVVVDIRRQSPTFGRWVGVILSADNRRQLYVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV +YS EHD G+ W D + I WP T +SEKD P + + F
Sbjct: 127 HTHVMYKVDAYYSPEHDRGIRWDDPELGIPWP---TTKAVLSEKDAKHPSFREAEINF 181
>gi|41205691|gb|AAR99611.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geobacillus
stearothermophilus]
Length = 183
Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats.
Identities = 87/176 (49%), Positives = 115/176 (65%), Gaps = 3/176 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
+L+ + F D RG+F ++Y+ K+ KELG FVQDNHS S + GT+RGLH+Q PYAQ
Sbjct: 11 AFLLEPKVFGDHRGFFMESYNDKVFKELGFNYEFVQDNHSLSVEVGTLRGLHYQLEPYAQ 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLVR + G I+D+ VDIR+ SPTYG W ++ N Q+ +P GFAHGF T+ NTEV
Sbjct: 71 TKLVRVVRGAIYDVIVDIRKGSPTYGEWQGFILTEWNKRQLLVPKGFAHGFCTIVPNTEV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
IYKV ++YS EHD G+ W D + I WP T P +SEKD P L + ++ F Y
Sbjct: 131 IYKVDNYYSPEHDRGICWNDPDLKIDWP---THSPILSEKDSKHPRLAEAENNFTY 183
>gi|304438711|ref|ZP_07398649.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304368360|gb|EFM22047.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 186
Score = 282 bits (722), Expect = 2e-74, Method: Composition-based stats.
Identities = 88/182 (48%), Positives = 121/182 (66%), Gaps = 4/182 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V I++ + F D+RGWF +++S+K +++ G+ FVQDNHSFS GT+RGLH+Q P
Sbjct: 8 LPGVVIIEPQVFGDARGWFMESWSAKKMEDAGIHVAFVQDNHSFSAQKGTLRGLHYQLNP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQAKL+R G IFD+AVDIRR SPTY WV +E+SA N Q++IP GFAHGF+TL N
Sbjct: 68 MAQAKLLRASRGAIFDVAVDIRRGSPTYAQWVGVELSAENYRQLFIPRGFAHGFITLTDN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ-IDSPFEY 181
EV YK + Y+ + D + W D +I + WPL T+ +SEKD P L + + F Y
Sbjct: 128 VEVQYKADNLYAPDCDGNIRWDDPAIGVAWPLTPTV---LSEKDAAAPLLAERSELNFVY 184
Query: 182 DG 183
+G
Sbjct: 185 EG 186
>gi|14521384|ref|NP_126860.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pyrococcus abyssi GE5]
gi|5458602|emb|CAB50090.1| rfbC dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13)
(dTDP-4-keto-6-deoxyglucose 3,5-epimerase)
(dTDP-L-rhamnose synthetase) [Pyrococcus abyssi GE5]
Length = 185
Score = 281 bits (720), Expect = 3e-74, Method: Composition-based stats.
Identities = 85/175 (48%), Positives = 121/175 (69%), Gaps = 4/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V ++K + FED RG+F +TY ++ G++ FVQDNHS S G +RGLHFQ+
Sbjct: 8 LSIPDVILIKPKVFEDERGFFMETYKKSDFEKAGIKGEFVQDNHSRS-KYGVLRGLHFQK 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQAK+VRCI G IFD+AVD+R+NSPT+G WV + +S N Q+YIP GFAHGF+ L
Sbjct: 67 EPYAQAKIVRCIRGVIFDVAVDLRKNSPTFGKWVGVILSEFNKWQLYIPRGFAHGFLVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
EV+YKV + Y+ E++ G+ W D ++I WP+ + P +SEKD+ P L ++
Sbjct: 127 DVAEVVYKVDNVYAPEYEGGLIWNDPDVNIKWPIDN---PILSEKDKKWPTLKEL 178
>gi|83944595|ref|ZP_00957045.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfitobacter sp. EE-36]
gi|83844572|gb|EAP82459.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfitobacter sp. EE-36]
Length = 190
Score = 281 bits (720), Expect = 3e-74, Method: Composition-based stats.
Identities = 92/182 (50%), Positives = 126/182 (69%), Gaps = 1/182 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V ++ +F D RG+FS++YS++ L E G+ FVQDNHS S GTIRGLHFQ PP
Sbjct: 10 LPGVIVITPARFGDYRGFFSESYSAEALAEHGITTPFVQDNHSLSMTQGTIRGLHFQAPP 69
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVRC G +FD+AVDIR+ SPTYG W +E+S NG Q+ +P GFAHGF+T
Sbjct: 70 HAQDKLVRCGRGALFDVAVDIRKGSPTYGQWFGVELSFENGKQLLVPAGFAHGFVTRAPE 129
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
TE++YK +D+Y+ E + VAW D ++ I W L D + P +SEKD N P L ++SPF ++
Sbjct: 130 TEIVYKCSDYYARETEGAVAWDDPAVGIDWGLGD-MTPVLSEKDANAPALADLNSPFTFE 188
Query: 183 GL 184
G+
Sbjct: 189 GV 190
>gi|253575947|ref|ZP_04853281.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. oral taxon
786 str. D14]
gi|251844741|gb|EES72755.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. oral taxon
786 str. D14]
Length = 182
Score = 281 bits (720), Expect = 3e-74, Method: Composition-based stats.
Identities = 80/180 (44%), Positives = 119/180 (66%), Gaps = 3/180 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + V +L+ D RG+F ++Y+ +LK+LG+ FVQDN S S + G +RGLH+Q
Sbjct: 6 LKLEGVFLLEPVVHGDHRGFFMESYNEAVLKQLGINYHFVQDNQSLSSEVGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQAKLVR + G I+D+ +DIRR+SPT+G W+ + +S N Q+ +P GFAHGF TLE
Sbjct: 66 NPKAQAKLVRVLTGAIYDVVLDIRRSSPTFGQWIGVTLSEANKRQLLVPKGFAHGFCTLE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NT+V YKV ++YS EHD G+ W D ++ I WP+ + P +S+KD+ P + + F+
Sbjct: 126 PNTQVFYKVDEYYSPEHDRGILWNDPALKINWPVSE---PLLSDKDRRHPTFAEAEMNFD 182
>gi|328544172|ref|YP_004304281.1| glucose-1-phosphate thymidylyltransferase [polymorphum gilvum
SL003B-26A1]
gi|326413915|gb|ADZ70978.1| Glucose-1-phosphate thymidylyltransferase [Polymorphum gilvum
SL003B-26A1]
Length = 187
Score = 281 bits (719), Expect = 4e-74, Method: Composition-based stats.
Identities = 85/180 (47%), Positives = 125/180 (69%), Gaps = 1/180 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +++ +KF D RG+FS+TY+++ + G+ FVQDNHS+S + GT+RGLH+Q
Sbjct: 9 LAIPDVLVIEPKKFGDHRGFFSETYNARAFADAGIDLRFVQDNHSYSAEPGTLRGLHYQG 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVR + GRI D+AVD+RR+SPT+G WVS EISA QI +P GFAH +TLE
Sbjct: 69 APHAQDKLVRVLRGRILDVAVDLRRSSPTFGKWVSAEISAEAWNQILVPAGFAHAILTLE 128
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+TE++YKV+++Y+ HD G+ W D + I WP+ + + +S+KD PFL + F+
Sbjct: 129 PHTELLYKVSNYYAPSHDFGIRWNDPELAIDWPISEDKV-ILSDKDAKQPFLKDVADLFD 187
>gi|134300868|ref|YP_001114364.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfotomaculum reducens
MI-1]
gi|134053568|gb|ABO51539.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfotomaculum reducens
MI-1]
Length = 186
Score = 280 bits (718), Expect = 6e-74, Method: Composition-based stats.
Identities = 89/180 (49%), Positives = 115/180 (63%), Gaps = 2/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N++ V I++ F D RGWF +TY+ E GL FVQDN SFS GT+RG+H+Q
Sbjct: 7 NLDGVIIVEPAVFGDHRGWFMETYNESKFLEAGLTYKFVQDNQSFSAVKGTLRGIHYQLN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKLVRCI G IFDIAVDIR+ SP +G W+ ++++A N Q+ IP GFAHGFMTL
Sbjct: 67 PKAQAKLVRCIRGAIFDIAVDIRKGSPNFGKWIGIKLTAENKKQLLIPRGFAHGFMTLTE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ EV YKV + Y+ E D + W D I I WP+ I P +S KD+ P L ++ F Y
Sbjct: 127 DVEVQYKVDELYAPELDRSILWSDPVIGIKWPM--DITPLLSTKDEKAPLLEDAENNFSY 184
>gi|331668735|ref|ZP_08369583.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli TA271]
gi|331063929|gb|EGI35840.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli TA271]
Length = 179
Score = 280 bits (718), Expect = 6e-74, Method: Composition-based stats.
Identities = 81/173 (46%), Positives = 114/173 (65%), Gaps = 4/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKSCK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
E +YK T++Y E D G+ W D S+ I WPL +T P +S +D+ L+
Sbjct: 126 ETAEFLYKTTNYYHPESDRGIIWNDPSLKIEWPLDNT--PVLSARDKAHSILD 176
>gi|169831838|ref|YP_001717820.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Desulforudis
audaxviator MP104C]
gi|169638682|gb|ACA60188.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Desulforudis
audaxviator MP104C]
Length = 190
Score = 280 bits (718), Expect = 6e-74, Method: Composition-based stats.
Identities = 89/181 (49%), Positives = 117/181 (64%), Gaps = 4/181 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I + +++ + F D RG+F +TYS + G++ FVQDNHS S +RGLH+Q+
Sbjct: 8 LTIPDLVLVEPKVFGDERGFFMETYSYRDFAVFGIRAAFVQDNHSLSRGP-VLRGLHYQK 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQAKLVRCI G IFD+AVDIRR SPTYG WV +E+SA N Q+Y+P GFAHGF L
Sbjct: 67 KPMAQAKLVRCIHGAIFDVAVDIRRGSPTYGKWVGVELSAENKRQLYLPRGFAHGFCALT 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
EV+YKV ++YS EHD G+ + D + I WP+ P +S KD LP L D+ F
Sbjct: 127 EVVEVVYKVDNYYSPEHDRGIIYNDPDLGIVWPV---ARPLLSPKDARLPRLKDADNSFV 183
Query: 181 Y 181
Y
Sbjct: 184 Y 184
>gi|117624234|ref|YP_853147.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli
APEC O1]
gi|237704492|ref|ZP_04534973.1| RmlC [Escherichia sp. 3_2_53FAA]
gi|300936658|ref|ZP_07151562.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 21-1]
gi|115513358|gb|ABJ01433.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli
APEC O1]
gi|226900858|gb|EEH87117.1| RmlC [Escherichia sp. 3_2_53FAA]
gi|300458239|gb|EFK21732.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 21-1]
gi|323951790|gb|EGB47664.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli H252]
Length = 182
Score = 280 bits (718), Expect = 6e-74, Method: Composition-based stats.
Identities = 81/176 (46%), Positives = 116/176 (65%), Gaps = 4/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKSSK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++S T+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSSTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK T++Y + D G+ W D SI+I+WP+ +L +S KD P L +I+
Sbjct: 126 ETAEFLYKTTNYYHPQSDRGIKWDDPSINISWPVDSQVL--LSAKDNKHPPLTKIE 179
>gi|310644249|ref|YP_003949008.1| glucose-1-phosphate thymidylyltransferase [Paenibacillus polymyxa
SC2]
gi|309249200|gb|ADO58767.1| Glucose-1-phosphate thymidylyltransferase [Paenibacillus polymyxa
SC2]
Length = 182
Score = 279 bits (716), Expect = 9e-74, Method: Composition-based stats.
Identities = 78/180 (43%), Positives = 118/180 (65%), Gaps = 3/180 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + +I++ D RG+F ++Y+ +++KE G+ F+QDN S S + G IRGLH+Q
Sbjct: 6 LKLEGAKIIEPVVHGDHRGFFMESYNEQIMKENGIDHAFIQDNQSLSAEAGVIRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KL+R ++G I+D+ +DIR++SPT+G WV + +S +N Q+ +P GFAHGF TL
Sbjct: 66 NPKAQTKLIRVLSGAIYDVILDIRKSSPTFGQWVGVILSEHNRRQLLVPKGFAHGFCTLV 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NT+V+YKV ++YS E+D G+ W D ++ I WP T +SEKDQ P L D F+
Sbjct: 126 PNTQVLYKVDEYYSPENDRGILWNDPALGIDWP---TSHAILSEKDQKHPALVNADINFD 182
>gi|325836661|ref|ZP_08166204.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Turicibacter sp. HGF1]
gi|325491186|gb|EGC93474.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Turicibacter sp. HGF1]
Length = 193
Score = 279 bits (716), Expect = 1e-73, Method: Composition-based stats.
Identities = 82/183 (44%), Positives = 109/183 (59%), Gaps = 3/183 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ + F D RG+F ++YS K E GL FVQDN S S G +RGLHFQ
Sbjct: 10 KIPDLYIIEPKVFGDERGYFMESYSQKDFTEAGLTMTFVQDNESKS-RKGVLRGLHFQTK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR G ++D+AVD+R+ SPTYG W + +SA N Q Y+P GFAHGF+
Sbjct: 69 -QTQGKLVRVTQGEVWDVAVDLRKGSPTYGQWEGVYLSAENKRQFYVPEGFAHGFVVTSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI-DSPFE 180
YK TDFY+ E+DSG+ W D+ + + WPL +SEKDQ L ++ D PF
Sbjct: 128 EAIFNYKCTDFYAPEYDSGLLWNDEDVAVKWPLEGLGEILLSEKDQKQKTLKELKDLPFI 187
Query: 181 YDG 183
Y+G
Sbjct: 188 YEG 190
>gi|169351599|ref|ZP_02868537.1| hypothetical protein CLOSPI_02379 [Clostridium spiroforme DSM 1552]
gi|169291821|gb|EDS73954.1| hypothetical protein CLOSPI_02379 [Clostridium spiroforme DSM 1552]
Length = 191
Score = 279 bits (716), Expect = 1e-73, Method: Composition-based stats.
Identities = 91/183 (49%), Positives = 124/183 (67%), Gaps = 1/183 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++T F D RG+F++TYS ++LG+ FVQDN SFS GT+RGLH+Q P
Sbjct: 7 EIPGVLIIETDVFGDHRGYFTETYSKPKYEKLGITVDFVQDNMSFSGQKGTLRGLHWQNP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ+KLV C G++ D+AVDIR+ SPTYG WVS+E+SA N Q +IP GFAHGF+TL
Sbjct: 67 PYAQSKLVSCTKGKVIDVAVDIRKGSPTYGKWVSVELSAENHRQFFIPQGFAHGFLTLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP-LLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ E YKV + Y+ E + G+ + D + ++ W LLD I P +SEKD P L + ++ F
Sbjct: 127 DVEFRYKVDNVYNKESEGGMRYDDPTCNVDWGKLLDGIEPVLSEKDMTGPTLEESNNQFV 186
Query: 181 YDG 183
Y+G
Sbjct: 187 YEG 189
>gi|192360654|ref|YP_001983891.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cellvibrio japonicus Ueda107]
gi|190686819|gb|ACE84497.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cellvibrio japonicus Ueda107]
Length = 182
Score = 279 bits (715), Expect = 1e-73, Method: Composition-based stats.
Identities = 82/174 (47%), Positives = 115/174 (66%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+I + + F D RG+F +++S + +E GL+ FVQDNHS S G +RGLH+Q P
Sbjct: 8 IPDVKIFEPKVFGDERGFFFESFSQRAFEEATGLKREFVQDNHSKSSK-GVLRGLHYQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVR G +FD+AVDIR++SPT+G WV + +SA+N Q++IP GFAHGF+TL
Sbjct: 67 PMAQGKLVRVAQGEVFDVAVDIRKSSPTFGQWVGVILSADNKRQLWIPEGFAHGFLTLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++YS H+ + W D +++I WP DT +S KD+ P L Q
Sbjct: 127 TAEFLYKTTNYYSPSHEGSIIWSDPTLNIQWP--DTSAVQISTKDRTAPILKQA 178
>gi|295100096|emb|CBK89185.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium cylindroides
T2-87]
Length = 189
Score = 279 bits (715), Expect = 1e-73, Method: Composition-based stats.
Identities = 90/183 (49%), Positives = 124/183 (67%), Gaps = 1/183 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I+ T F D RG+F++TYS ++G+ FVQDN SFS GT+RGLH+Q P
Sbjct: 7 KIPGVLIIDTDVFGDHRGYFTETYSKPKYGKMGITVDFVQDNMSFSSQKGTLRGLHWQNP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ+KLV C G++ D+AVDIR+ SPTYG WVS+E+SA N Q +IP GFAHGF+TL
Sbjct: 67 PYAQSKLVSCTKGKVIDVAVDIRKGSPTYGQWVSVELSAENHRQFFIPQGFAHGFLTLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP-LLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ E YKV + Y+ E + G+ + D ++++ W LL+ I P +SEKD+ P L + D+ F
Sbjct: 127 DVEFRYKVDNVYNKESEGGMRYDDPTVNVDWGQLLNGIEPVLSEKDKIGPTLEESDNQFV 186
Query: 181 YDG 183
Y+G
Sbjct: 187 YEG 189
>gi|212224999|ref|YP_002308235.1| hypothetical dTDP-4-dehydrorhamnose 3,5-epimerase [Thermococcus
onnurineus NA1]
gi|212009956|gb|ACJ17338.1| hypothetical dTDP-4-dehydrorhamnose 3,5-epimerase [Thermococcus
onnurineus NA1]
Length = 185
Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats.
Identities = 84/175 (48%), Positives = 117/175 (66%), Gaps = 4/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V ++K + FED RG+F +TY ++ G++ FVQDNHS S G +RGLHFQR
Sbjct: 8 LEIPDVILIKPKVFEDERGFFMETYKKSDFEKAGIKGEFVQDNHSKS-RYGVLRGLHFQR 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQAK+VR + G I+D+AVD+R+NSPT+G WV + +S +N Q+YIP GFAHGF+ L
Sbjct: 67 QPYAQAKIVRAVRGVIYDVAVDLRKNSPTFGRWVGVILSEHNKYQLYIPRGFAHGFLVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
EV+YKV + Y+ +++ G+ W D I I WP+ P VSEKD+ P L +
Sbjct: 127 DVAEVVYKVDNVYAPDYEGGIIWNDPDIGIDWPIDG---PIVSEKDRKWPTLKEA 178
>gi|16765424|ref|NP_461039.1| dTDP-4,deoxyrhamnose 3,5 epimerase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|141363|sp|P26394|RMLC_SALTY RecName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; AltName:
Full=Thymidine diphospho-4-keto-rhamnose 3,5-epimerase;
AltName: Full=dTDP-4-keto-6-deoxyglucose 3,5-epimerase;
AltName: Full=dTDP-6-deoxy-D-xylo-4-hexulose
3,5-epimerase; AltName: Full=dTDP-L-rhamnose synthase
gi|7767043|pdb|1DZR|A Chain A, Rmlc From Salmonella Typhimurium
gi|7767044|pdb|1DZR|B Chain B, Rmlc From Salmonella Typhimurium
gi|7767045|pdb|1DZT|A Chain A, Rmlc From Salmonella Typhimurium
gi|7767046|pdb|1DZT|B Chain B, Rmlc From Salmonella Typhimurium
gi|581655|emb|CAA40118.1| rmlC [Salmonella enterica]
gi|16420626|gb|AAL20998.1| dTDP-4,deoxyrhamnose 3,5 epimerase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|261247309|emb|CBG25134.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267994148|gb|ACY89033.1| dTDP-4,deoxyrhamnose 3,5 epimerase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301158655|emb|CBW18167.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|323130417|gb|ADX17847.1| dTDP-4,deoxyrhamnose 3,5 epimerase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|332989029|gb|AEF08012.1| dTDP-4,deoxyrhamnose 3,5 epimerase [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 183
Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats.
Identities = 83/174 (47%), Positives = 112/174 (64%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ + +EL G + FVQDNHS S +RGLHFQR
Sbjct: 9 IPDVLILEPKVFGDERGFFFESYNQQTFEELIGRKVTFVQDNHSKS-KKNVLRGLHFQRG 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 68 ENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++YS + + W D++I I WP + LP +S KD P L+Q
Sbjct: 128 YAEFLYKATNYYSPSSEGSILWNDEAIGIEWPF--SQLPELSAKDAAAPLLDQA 179
>gi|16357460|gb|AAL18012.1| dTDP-dehydrorhamnose 3,5-epimerase [Aneurinibacillus
thermoaerophilus]
Length = 182
Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats.
Identities = 84/179 (46%), Positives = 117/179 (65%), Gaps = 3/179 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
V +L+ + F D RG+F ++Y+ +L+ LG+ FVQDN S S + G +RGLH+Q
Sbjct: 7 KFQDVVLLEPKVFGDGRGFFMESYNKAVLEVLGIHIDFVQDNQSLSREAGVLRGLHYQLN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVR + G I+D+ VDIR+NSPT+G W + +S N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLVRVLTGAIYDVVVDIRKNSPTFGQWEAFILSEENKRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NT+V YKV ++YS EHD G+AW D +++I WP T P +SEKD+ P L + + FE
Sbjct: 127 NTQVFYKVDEYYSPEHDRGIAWDDAALNIPWP---TSEPILSEKDKCHPVLAEAEINFE 182
>gi|289549232|ref|YP_003474220.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermocrinis albus DSM 14484]
gi|289182849|gb|ADC90093.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermocrinis albus DSM 14484]
Length = 190
Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats.
Identities = 86/182 (47%), Positives = 113/182 (62%), Gaps = 2/182 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +++ F D RG+F + + ++ G+ FVQDNHS S G +RGLHFQ
Sbjct: 8 LEIPDVVLIRPVVFTDERGFFMEIFKRSDFEKAGIDVDFVQDNHSRS-KKGVLRGLHFQL 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ GRIFD+AVD+R SPTYG WV +E+S N L ++IP GFAHGF+TL
Sbjct: 67 EPYAQGKLVRCVKGRIFDVAVDLRSGSPTYGRWVGVELSEENHLMLWIPKGFAHGFLTLS 126
Query: 121 MNTEVIYKVT-DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+V+YKV+ Y E D+G+ W D I I WPL ++S KD +LPFL F
Sbjct: 127 EEADVLYKVSGAEYRPEADAGIRWNDPDIGIAWPLHLVENLTISPKDSSLPFLKDAKINF 186
Query: 180 EY 181
Y
Sbjct: 187 RY 188
>gi|288816201|gb|ADC54925.1| RmlC [Escherichia coli]
Length = 182
Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats.
Identities = 80/176 (45%), Positives = 116/176 (65%), Gaps = 4/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKSSK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++S T+G WV + +SA N Q++IP G+AHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSSTFGKWVGVNLSAENKRQLWIPEGYAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK T++Y + D G+ W D SI+I+WP+ +L +S KD P L +I+
Sbjct: 126 ETAEFLYKTTNYYHPQSDRGIKWDDPSINISWPVDSQVL--LSAKDNKHPPLTKIE 179
>gi|323936932|gb|EGB33215.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli E1520]
Length = 178
Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats.
Identities = 79/175 (45%), Positives = 116/175 (66%), Gaps = 4/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKSNK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++Y E D G+ W D+ I+I WP + P +S+KD+ ++++
Sbjct: 126 ETAEFLYKTTNYYHPESDRGIIWNDQDINIIWP--NIAEPLLSDKDKLAKNISEL 178
>gi|315923820|ref|ZP_07920049.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315622853|gb|EFV02805.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 188
Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats.
Identities = 80/181 (44%), Positives = 112/181 (61%), Gaps = 3/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V ++ + F D RG+F +TYS+ +G+ ++FVQDN S++ GT+RG+HFQ
Sbjct: 7 SIPGVCVVTPKVFGDRRGYFMETYSTAAFAAIGIDNIFVQDNRSYTAKKGTLRGIHFQNA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKLV + G + D+AVD+R SPTY WV E+SA N ++IP GF HGF+TL
Sbjct: 67 PMAQAKLVSVVRGTVMDVAVDLRAGSPTYRQWVGAELSAENKRMLFIPRGFGHGFVTLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ E YKV + YS EHD G+ + D +I + W + D P +SEKD P L D F Y
Sbjct: 127 DVEFAYKVDNLYSPEHDRGIRFNDPAIGVDWGIAD---PILSEKDMTSPLLADSDCNFVY 183
Query: 182 D 182
+
Sbjct: 184 E 184
>gi|16761026|ref|NP_456643.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29141278|ref|NP_804620.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|25292478|pir||AC0767 dTDP-4-dehydrorhamnose 3,5-epimerase [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503324|emb|CAD02457.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29136904|gb|AAO68469.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 183
Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats.
Identities = 82/174 (47%), Positives = 112/174 (64%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ + +E +G + FVQDNHS S +RGLHFQR
Sbjct: 9 IPDVLILEPKVFGDERGFFFESYNQQTFEESIGRKVTFVQDNHSKS-KKNVLRGLHFQRG 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 68 ENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++YS + + W D++I I WP + LP +S KD P L+Q
Sbjct: 128 YAEFLYKATNYYSPSSEGSILWNDETIGIEWPF--SQLPELSAKDAAAPLLHQA 179
>gi|167991009|ref|ZP_02572108.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168242167|ref|ZP_02667099.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|194451405|ref|YP_002046144.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|197261750|ref|ZP_03161824.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|194409709|gb|ACF69928.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|197240005|gb|EDY22625.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|205330504|gb|EDZ17268.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205338551|gb|EDZ25315.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|312913085|dbj|BAJ37059.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321224742|gb|EFX49805.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
Length = 182
Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats.
Identities = 83/174 (47%), Positives = 112/174 (64%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ + +EL G + FVQDNHS S +RGLHFQR
Sbjct: 8 IPDVLILEPKVFGDERGFFFESYNQQTFEELIGRKVTFVQDNHSKS-KKNVLRGLHFQRG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 67 ENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++YS + + W D++I I WP + LP +S KD P L+Q
Sbjct: 127 YAEFLYKATNYYSPSSEGSILWNDEAIGIEWPF--SQLPELSAKDAAAPLLDQA 178
>gi|115503061|gb|ABI98984.1| RmlC [Escherichia coli]
gi|156539326|gb|ABU80589.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Shigella flexneri]
gi|156539341|gb|ABU80599.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Shigella flexneri]
gi|168481278|gb|ACA24770.1| RmlC [Shigella flexneri 6]
gi|320185804|gb|EFW60558.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella flexneri CDC 796-83]
Length = 185
Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats.
Identities = 78/179 (43%), Positives = 112/179 (62%), Gaps = 2/179 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKSSK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
E +YK T++Y + D G+ W D + I WP ++ +S KD L+ + F
Sbjct: 126 ETAEFLYKTTNYYHPDSDRGIVWNDPILSIKWPTIEHNNYILSIKDARAKELHNMKELF 184
>gi|187731823|ref|YP_001879841.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella boydii CDC 3083-94]
gi|187428815|gb|ACD08089.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella boydii CDC 3083-94]
Length = 185
Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats.
Identities = 84/173 (48%), Positives = 114/173 (65%), Gaps = 4/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFMESFNQKVFEEAIGRKVEFVQDNHSKSNK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +S+ N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSSENMRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
E +YK T +Y E DSG+ W DK+I I WPL + P +SEKD NL
Sbjct: 126 DTAEFLYKTTKYYHPESDSGIIWNDKNIGICWPLREK--PIISEKDSNLLPFA 176
>gi|15895598|ref|NP_348947.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium acetobutylicum
ATCC 824]
gi|15025340|gb|AAK80287.1|AE007734_1 DTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium acetobutylicum
ATCC 824]
gi|325509746|gb|ADZ21382.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium acetobutylicum EA
2018]
Length = 185
Score = 278 bits (713), Expect = 3e-73, Method: Composition-based stats.
Identities = 83/178 (46%), Positives = 108/178 (60%), Gaps = 2/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I+ V I++T F D+RG+F +TY+ + KE GL VFVQDN S S G +RGLHFQ+
Sbjct: 10 DIDGVYIIETGVFGDNRGYFMETYNYEEFKEAGLDMVFVQDNQSKS-RKGVLRGLHFQKK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R S TYG WV + +S N Q YIP GFAHGF+ L
Sbjct: 69 -HTQGKLVRVVKGEVFDVAVDLREGSKTYGKWVGVTLSEENKKQFYIPEGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
E YK TDFY + G+ W D + I WP+ D SEKDQ P L++ F
Sbjct: 128 EAEFCYKCTDFYDPTSEGGILWNDPEVGIKWPIDDIENLIFSEKDQKWPKLSECGIKF 185
>gi|332295247|ref|YP_004437170.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermodesulfobium narugense
DSM 14796]
gi|332178350|gb|AEE14039.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermodesulfobium narugense
DSM 14796]
Length = 188
Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats.
Identities = 87/182 (47%), Positives = 117/182 (64%), Gaps = 4/182 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V I+K + F D RG+F +TY + + G+ FVQDNHS S G +RGLH+Q
Sbjct: 9 DIPEVMIVKPKVFGDERGFFLETYKREDFVKAGIYKEFVQDNHSKSVK-GVLRGLHYQLN 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVRCI G+IFD+AVDIR+NSPT+ +VS+E+S N +++P GFAHGF+TL
Sbjct: 68 PKAQGKLVRCIKGKIFDVAVDIRKNSPTFLKYVSVELSEENKFMLWVPEGFAHGFLTLSD 127
Query: 122 NTEVIYKVTDF-YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
E++YKV+ YS EHD + W D I I WPL P +S+KD++ P L D F
Sbjct: 128 EAEIMYKVSGSTYSPEHDRSLRWNDPEIGINWPLEGE--PILSKKDKDAPLLKNADINFV 185
Query: 181 YD 182
Y+
Sbjct: 186 YE 187
>gi|261405318|ref|YP_003241559.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. Y412MC10]
gi|261281781|gb|ACX63752.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. Y412MC10]
Length = 185
Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats.
Identities = 81/182 (44%), Positives = 117/182 (64%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+ ++ +D RG+F ++++ ++ K G+ D F+QDNHS S + G IRGLH+Q
Sbjct: 7 KLQGVKRIEPTVHQDHRGFFMESFNDRVFKGCGINDHFIQDNHSMSREAGVIRGLHYQLS 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KL+R ++G I+D+ VDIR SPTYG W +SA N LQ+ +P GFAHGF TL
Sbjct: 67 PEGQTKLIRVVSGAIYDVVVDIRSGSPTYGQWQGFILSAANYLQLLVPKGFAHGFCTLVH 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+TEVIYKV +YS EHD G+AW D ++I WP+ P +S+KD P L ++ + Y
Sbjct: 127 DTEVIYKVDAYYSPEHDRGIAWNDPDLNIDWPVNK---PVLSDKDSKHPRLALAENNYIY 183
Query: 182 DG 183
+G
Sbjct: 184 EG 185
>gi|160914760|ref|ZP_02076974.1| hypothetical protein EUBDOL_00767 [Eubacterium dolichum DSM 3991]
gi|158433300|gb|EDP11589.1| hypothetical protein EUBDOL_00767 [Eubacterium dolichum DSM 3991]
Length = 191
Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats.
Identities = 90/182 (49%), Positives = 121/182 (66%), Gaps = 1/182 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++T F D RG+FS+TYS ELG+ FVQDN SFS GT+RGLH+Q P
Sbjct: 7 KIPGVLIIETDVFGDHRGYFSETYSKPKYAELGIDVEFVQDNMSFSAQKGTLRGLHWQNP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ+KLV C G + D+AVDIR+ SPTYG WVS+E++A N Q +IP GFAHGF+T+
Sbjct: 67 PYAQSKLVSCTKGAVIDVAVDIRKGSPTYGEWVSVELTAENHRQFFIPQGFAHGFLTISD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP-LLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ E YKV + Y+ E + G+ + D S+++ W LL+ I P +SEKD + P L ++ F
Sbjct: 127 DVEFRYKVDNVYNKESEGGMRYDDPSVNVDWGSLLNGIEPVLSEKDAHGPTLEDANNQFV 186
Query: 181 YD 182
Y
Sbjct: 187 YK 188
>gi|62955960|gb|AAY23336.1| RmlC [Shigella boydii]
Length = 185
Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats.
Identities = 84/173 (48%), Positives = 114/173 (65%), Gaps = 4/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKSNK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +S+ N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSSENMRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
E +YK T +Y E DSG+ W DK+I I WPL + P +SEKD NL
Sbjct: 126 DTAEFLYKTTKYYHPESDSGIIWNDKNIGICWPLREK--PIISEKDSNLLPFA 176
>gi|213052828|ref|ZP_03345706.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213419660|ref|ZP_03352726.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213425548|ref|ZP_03358298.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213620978|ref|ZP_03373761.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213650448|ref|ZP_03380501.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213852951|ref|ZP_03382483.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|289807299|ref|ZP_06537928.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
gi|289827039|ref|ZP_06545847.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
Length = 182
Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats.
Identities = 82/174 (47%), Positives = 112/174 (64%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ + +E +G + FVQDNHS S +RGLHFQR
Sbjct: 8 IPDVLILEPKVFGDERGFFFESYNQQTFEESIGRKVTFVQDNHSKS-KKNVLRGLHFQRG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 67 ENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++YS + + W D++I I WP + LP +S KD P L+Q
Sbjct: 127 YAEFLYKATNYYSPSSEGSILWNDETIGIEWPF--SQLPELSAKDAAAPLLHQA 178
>gi|56413002|ref|YP_150077.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197361930|ref|YP_002141567.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56127259|gb|AAV76765.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197093407|emb|CAR58862.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 180
Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats.
Identities = 82/174 (47%), Positives = 112/174 (64%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ + +E +G + FVQDNHS S +RGLHFQR
Sbjct: 6 IPDVLILEPKVFGDERGFFFESYNQQTFEESIGRKVTFVQDNHSKS-KKNVLRGLHFQRG 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 65 ENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++YS + + W D++I I WP + LP +S KD P L+Q
Sbjct: 125 YAEFLYKATNYYSPSSEGSILWNDETIGIEWPF--SQLPELSAKDAAAPLLHQA 176
>gi|197248407|ref|YP_002147052.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197212110|gb|ACH49507.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
Length = 182
Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats.
Identities = 82/174 (47%), Positives = 112/174 (64%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ + +E +G + FVQDNHS S +RGLHFQR
Sbjct: 8 IPDVLILEPKVFGDERGFFFESYNQQTFEESIGRKVTFVQDNHSKS-KKNVLRGLHFQRG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 67 ENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++YS + + W D++I I WP + LP +S KD P L+Q
Sbjct: 127 YAEFLYKATNYYSPSSEGSILWNDEAIGIEWPF--SQLPELSAKDAAAPLLHQA 178
>gi|205353237|ref|YP_002227038.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207857530|ref|YP_002244181.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|205273018|emb|CAR37966.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|206709333|emb|CAR33673.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|326623928|gb|EGE30273.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|326628324|gb|EGE34667.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 183
Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats.
Identities = 83/174 (47%), Positives = 112/174 (64%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ + +EL G + FVQDNHS S +RGLHFQR
Sbjct: 9 IPDVLILEPKVFGDERGFFFESYNQQTFEELIGRKVTFVQDNHSKS-KKNVLRGLHFQRG 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 68 ENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++YS + + W D++I I WP + LP +S KD P L+Q
Sbjct: 128 YAEFLYKATNYYSPSSEGSILWNDETIGIEWPF--SQLPELSAKDAAAPLLHQA 179
>gi|195953941|ref|YP_002122231.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hydrogenobaculum sp. Y04AAS1]
gi|195933553|gb|ACG58253.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hydrogenobaculum sp. Y04AAS1]
Length = 190
Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats.
Identities = 94/183 (51%), Positives = 127/183 (69%), Gaps = 2/183 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V ++K + F+D RG+F ++Y ++ G+ D+F+QDNHS S G +RGLH+Q+
Sbjct: 9 DIKEVILIKPKVFKDERGFFLESYKKSEFEKNGITDIFIQDNHSKSVK-GVLRGLHYQKE 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL+RCI G+IFD+AVDIR+NSPTYG WV E+S N L ++IP GFAHGF+TL
Sbjct: 68 PAAQGKLIRCIKGKIFDVAVDIRKNSPTYGGWVGYELSEENKLMLFIPKGFAHGFLTLSE 127
Query: 122 NTEVIYKVTD-FYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
E+IYKV++ YS EHD G+ W DK+I I WPL +S+KD+NLP L Q D+ F
Sbjct: 128 EAEIIYKVSEAEYSKEHDKGIIWNDKTISIKWPLEHIKEIILSDKDKNLPTLEQADNNFL 187
Query: 181 YDG 183
Y G
Sbjct: 188 YGG 190
>gi|168481330|gb|ACA24817.1| RmlC [Escherichia coli]
Length = 182
Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats.
Identities = 78/175 (44%), Positives = 111/175 (63%), Gaps = 4/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKSSK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++Y E D G+ W D I I W + +S+KD+ P + +
Sbjct: 126 ETAEFVYKTTNYYHPESDRGIRWDDPYIGIKW--ENEYNVKLSDKDKKNPTMKDV 178
>gi|168259602|ref|ZP_02681575.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168466248|ref|ZP_02700118.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|194442370|ref|YP_002041364.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194401033|gb|ACF61255.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|195631440|gb|EDX50000.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|205351188|gb|EDZ37819.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
Length = 182
Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats.
Identities = 82/174 (47%), Positives = 112/174 (64%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ + ++L G + FVQDNHS S +RGLHFQR
Sbjct: 8 IPDVLILEPKVFGDERGFFFESYNQQTFEKLIGRKITFVQDNHSKS-KKNVLRGLHFQRG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 67 ANAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++YS + + W D++I I WP + LP +S KD P L+Q
Sbjct: 127 YAEFLYKATNYYSPSSEGSILWNDETIGIEWPF--SQLPELSAKDAAAPLLDQA 178
>gi|160896725|ref|YP_001562307.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Delftia acidovorans SPH-1]
gi|160362309|gb|ABX33922.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Delftia acidovorans SPH-1]
Length = 182
Score = 278 bits (711), Expect = 4e-73, Method: Composition-based stats.
Identities = 77/175 (44%), Positives = 114/175 (65%), Gaps = 3/175 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +++ + F D RG+F ++++ + + G FVQDNHS S G +RGLH+Q P
Sbjct: 8 IPEVMLIEPKVFGDDRGFFLESFNQQAFNQATGTDHQFVQDNHSRS-KKGVLRGLHYQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVR + G +FD+AVDIR+ SPT+G WV E++ +N Q+++P GFAHGFM L
Sbjct: 67 PHAQGKLVRVVRGAVFDVAVDIRKGSPTFGQWVGAELTEDNHRQLWVPPGFAHGFMVLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + +YK T FY+ + D G+AW D +I + WP LD + S+S+KD P L +
Sbjct: 127 SADFLYKATAFYAPQADRGIAWDDPAIGVQWPQLD-VELSLSDKDLKQPLLADAE 180
>gi|168481319|gb|ACA24807.1| RmlC [Shigella dysenteriae]
Length = 182
Score = 278 bits (711), Expect = 4e-73, Method: Composition-based stats.
Identities = 78/175 (44%), Positives = 111/175 (63%), Gaps = 4/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKSSK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++Y E D G+ W D I I W + +S+KD+ P + +
Sbjct: 126 ETAEFVYKTTNYYHPESDRGIRWDDPYIGIKW--ENEYNVRLSDKDKKNPTMKDV 178
>gi|308071021|ref|YP_003872626.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase) [Paenibacillus polymyxa E681]
gi|305860300|gb|ADM72088.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase) [Paenibacillus polymyxa E681]
Length = 181
Score = 278 bits (711), Expect = 4e-73, Method: Composition-based stats.
Identities = 81/184 (44%), Positives = 119/184 (64%), Gaps = 7/184 (3%)
Query: 1 MNINPV----RILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGL 56
M I V +I++ D RG+F ++Y+ +++KE G+ F+QDN S S + G IRGL
Sbjct: 1 MIIKEVLSGSKIIEPVVHGDHRGFFMESYNEQIMKENGINYAFIQDNQSLSVETGVIRGL 60
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H+Q P AQ KL+R ++G I+D+ +DIR++SPT+G WV + +S +N Q+ +P GFAHGF
Sbjct: 61 HYQLKPKAQTKLIRVLSGAIYDVILDIRKSSPTFGQWVGVILSEHNRRQLLVPKGFAHGF 120
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
TL NT+V+YKV ++YS E+D G+ W D ++ I WP T +SEKDQ P L D
Sbjct: 121 CTLVPNTQVLYKVDEYYSPENDRGILWNDPALGIDWP---TSHAILSEKDQKHPVLADAD 177
Query: 177 SPFE 180
F+
Sbjct: 178 INFD 181
>gi|161613226|ref|YP_001587191.1| hypothetical protein SPAB_00936 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167551040|ref|ZP_02344795.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|198246059|ref|YP_002216181.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|161362590|gb|ABX66358.1| hypothetical protein SPAB_00936 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197940575|gb|ACH77908.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|205324010|gb|EDZ11849.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
Length = 182
Score = 278 bits (711), Expect = 4e-73, Method: Composition-based stats.
Identities = 83/174 (47%), Positives = 112/174 (64%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ + +EL G + FVQDNHS S +RGLHFQR
Sbjct: 8 IPDVLILEPKVFGDERGFFFESYNQQTFEELIGRKVTFVQDNHSKS-KKNVLRGLHFQRG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 67 ENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++YS + + W D++I I WP + LP +S KD P L+Q
Sbjct: 127 YAEFLYKATNYYSPSSEGSILWNDETIGIEWPF--SQLPELSAKDAAAPLLHQA 178
>gi|221065027|ref|ZP_03541132.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Comamonas testosteroni KF-1]
gi|220710050|gb|EED65418.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Comamonas testosteroni KF-1]
Length = 183
Score = 278 bits (711), Expect = 4e-73, Method: Composition-based stats.
Identities = 84/177 (47%), Positives = 116/177 (65%), Gaps = 3/177 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ + F D+RG+F +++ L + G F+QDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVFLIEPKVFGDARGFFLESFRQDLFNQATGTNCEFIQDNHSRSSK-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
PP+AQ KLVR I+G +FD+AVDIRRNSPT+G WV E+SA N Q++IP GFAHGF+ L
Sbjct: 65 LPPHAQGKLVRVISGAVFDVAVDIRRNSPTFGQWVGAELSAENHHQLWIPPGFAHGFVVL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK T +Y+ E D G+ W D + I WP LD I S+SEKD+N P Q +
Sbjct: 125 SDTADFVYKTTAYYAPESDRGLLWNDPDLGIAWPQLD-IEFSLSEKDRNQPAFKQAE 180
>gi|218280966|ref|ZP_03487556.1| hypothetical protein EUBIFOR_00114 [Eubacterium biforme DSM 3989]
gi|218217737|gb|EEC91275.1| hypothetical protein EUBIFOR_00114 [Eubacterium biforme DSM 3989]
Length = 190
Score = 277 bits (710), Expect = 5e-73, Method: Composition-based stats.
Identities = 88/183 (48%), Positives = 122/183 (66%), Gaps = 1/183 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I+ T F D RG+F++TYS +++G+ FVQDN SFS GT+RGLH+Q P
Sbjct: 7 KIPGVLIIDTDVFGDHRGYFTETYSKPKYEKMGITVDFVQDNMSFSAQKGTLRGLHWQNP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ+KLV C G + D+AVDIR+ SPT+G WVS+E+S N Q +IP GFAHGF+TL
Sbjct: 67 PYAQSKLVSCTKGTVIDVAVDIRKGSPTFGQWVSVELSEENHRQFFIPQGFAHGFLTLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP-LLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ E YKV + Y+ E + G+ + D + ++ W LL+ I P +SEKDQ P L + ++ F
Sbjct: 127 DVEFRYKVDNVYNKESEGGMRYDDPTCNVDWGSLLNGIEPVLSEKDQVGPTLEESNNQFV 186
Query: 181 YDG 183
Y+G
Sbjct: 187 YEG 189
>gi|238927849|ref|ZP_04659609.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas flueggei ATCC
43531]
gi|238884294|gb|EEQ47932.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas flueggei ATCC
43531]
Length = 186
Score = 277 bits (710), Expect = 5e-73, Method: Composition-based stats.
Identities = 88/182 (48%), Positives = 119/182 (65%), Gaps = 4/182 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V I++ + F D+RGWF +++S K +++ G+ FVQDNHSFS GT+RGLH+Q P
Sbjct: 8 LPGVMIIEPQVFGDARGWFMESWSEKKMEDAGIHAAFVQDNHSFSAQKGTLRGLHYQLNP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQAKL+R G IFD+AVDIRRNSPTY WV E+SA N Q++IP GFAHGF+TL +
Sbjct: 68 MAQAKLLRASRGAIFDVAVDIRRNSPTYAQWVGAELSAENYRQLFIPRGFAHGFITLTDD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ-IDSPFEY 181
EV YK + Y+ + D + W D +I I WPL T+ +SEKD P L + + F Y
Sbjct: 128 VEVQYKADNLYASDCDGNIRWDDPTIGIAWPLAPTV---LSEKDAAAPLLAERSELNFVY 184
Query: 182 DG 183
+
Sbjct: 185 EA 186
>gi|168481307|gb|ACA24796.1| RmlC [Escherichia coli]
Length = 183
Score = 277 bits (710), Expect = 5e-73, Method: Composition-based stats.
Identities = 79/174 (45%), Positives = 114/174 (65%), Gaps = 3/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKSCK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKWSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T++Y+ ++ + W DK + I WP L T+ +S+KD P L++
Sbjct: 126 ETAEFVYKTTNYYAPGYEGSIIWNDKILSIDWPEL-TLEYILSDKDLKAPILSE 178
>gi|46451854|gb|AAS98029.1| RmlC [Shigella boydii]
Length = 177
Score = 277 bits (710), Expect = 5e-73, Method: Composition-based stats.
Identities = 81/173 (46%), Positives = 115/173 (66%), Gaps = 4/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKSSK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
E +YK T++Y E D G+ W D I+I WP + I +S+KD++ P L+
Sbjct: 126 ETAEFLYKTTNYYHPESDRGIIWDDSFINIQWPYAECI--ILSDKDKHQPRLS 176
>gi|168236252|ref|ZP_02661310.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|194734639|ref|YP_002115183.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|194710141|gb|ACF89362.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197290480|gb|EDY29835.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
Length = 182
Score = 277 bits (710), Expect = 5e-73, Method: Composition-based stats.
Identities = 82/174 (47%), Positives = 112/174 (64%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ + +E +G + FVQDNHS S +RGLHFQR
Sbjct: 8 IPDVLILEPKVFGDERGFFFESYNQQTFEESIGRKVTFVQDNHSKS-KKNVLRGLHFQRG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 67 ENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++YS + + W D++I I WP + LP +S KD P L+Q
Sbjct: 127 YAEFLYKATNYYSPSSEGSILWNDETIGIEWPF--SQLPELSAKDAAAPLLHQA 178
>gi|261415186|ref|YP_003248869.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261371642|gb|ACX74387.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|302326605|gb|ADL25806.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 187
Score = 277 bits (709), Expect = 6e-73, Method: Composition-based stats.
Identities = 81/179 (45%), Positives = 109/179 (60%), Gaps = 2/179 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+I++ F D+RG+F +TYS + E G+ FVQDN S S G +RGLHFQ+
Sbjct: 10 EIEGVKIIEPTVFGDARGYFMETYSKRDFAEGGIDVDFVQDNESRS-RKGVLRGLHFQKQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR I G +FD+AVD+R+NS T+G WV + +SA N Q YIP GFAHGF+ L
Sbjct: 69 NP-QGKLVRVIEGEVFDVAVDLRKNSKTFGKWVGVTLSAENKKQFYIPEGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+YK T FY+ + G+ W D +I I WP+ + P +SEKD P L +D F+
Sbjct: 128 TAAFVYKCTRFYAPNDEGGLFWNDPAIGIKWPVGEGFEPLLSEKDTKNPLLKDLDFAFD 186
>gi|149203262|ref|ZP_01880232.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseovarius sp. TM1035]
gi|149143095|gb|EDM31134.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseovarius sp. TM1035]
Length = 189
Score = 277 bits (709), Expect = 6e-73, Method: Composition-based stats.
Identities = 88/182 (48%), Positives = 119/182 (65%), Gaps = 1/182 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N+ V IL + D+RG+FS++++ + ++E G+ FVQDNHS S GT+RGLHFQ P
Sbjct: 7 NLPGVVILTPARHGDTRGFFSESWNRRRMQEAGITIDFVQDNHSLSEQVGTVRGLHFQSP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQAKLVRC G ++D+AVDIRR SPTYG WV +++S NG Q+ IP GF HGF+T
Sbjct: 67 PHAQAKLVRCGRGALYDVAVDIRRGSPTYGQWVGVDLSFENGRQLLIPEGFLHGFVTRAP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
TE+IYK +D+Y+ E D V + D I I W + D +S KD P L + SPF Y
Sbjct: 127 MTEIIYKCSDYYAPECDGAVRFDDPEIGIDWGI-DPAAAVLSGKDAKAPLLREFVSPFVY 185
Query: 182 DG 183
+
Sbjct: 186 EA 187
>gi|163793777|ref|ZP_02187751.1| dTDP-4-dehydrorhamnose 3,5-epimerase [alpha proteobacterium BAL199]
gi|159180888|gb|EDP65405.1| dTDP-4-dehydrorhamnose 3,5-epimerase [alpha proteobacterium BAL199]
Length = 185
Score = 277 bits (709), Expect = 6e-73, Method: Composition-based stats.
Identities = 98/179 (54%), Positives = 121/179 (67%), Gaps = 1/179 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V+I++ +KF D RG+FS+TYS + L FVQDNHS S G +RGLHFQ
Sbjct: 6 LAIPDVKIIRPKKFGDHRGFFSETYSKPAFEAADLHLDFVQDNHSLSAASGVLRGLHFQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KL+R + GRIFD+AVDIR S TYG WVS EISA QI +P GFAHGF+TLE
Sbjct: 66 PPFAQDKLLRVVRGRIFDVAVDIRHGSATYGQWVSAEISAEEWNQILVPIGFAHGFVTLE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+TEVIYKVT Y+ EHD G+AW D + I WPL + I P++SEKD P L + F
Sbjct: 126 PDTEVIYKVTAPYAPEHDRGIAWDDPDLGIAWPL-EGIEPTLSEKDTRHPRLADLPVHF 183
>gi|254295500|ref|YP_003061522.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hirschia baltica ATCC 49814]
gi|254044031|gb|ACT60825.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hirschia baltica ATCC 49814]
Length = 188
Score = 277 bits (709), Expect = 6e-73, Method: Composition-based stats.
Identities = 89/182 (48%), Positives = 120/182 (65%), Gaps = 1/182 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ ++ V+ + +F D+RG+FS+TYS + + GL +VQDNHS S + +RGLHFQ
Sbjct: 6 LGLDGVKEITPARFGDARGFFSETYSEQRFSDAGLPTGWVQDNHSLSAEAFVLRGLHFQT 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVR + G IFD+AVDIR+NSP YG WV + ++A G QI +P GFAHGF+TL
Sbjct: 66 DPFAQDKLVRVLKGEIFDVAVDIRKNSPDYGKWVGITLTAEKGNQILVPKGFAHGFLTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
N EV YKVT Y+ E+D G+ W D +I I WPL + P +S KD P L +D+ FE
Sbjct: 126 PNVEVAYKVTSGYAPENDRGIIWNDPAIGIDWPL-NGHEPQLSGKDAVAPLLADVDNNFE 184
Query: 181 YD 182
Y
Sbjct: 185 YK 186
>gi|295691457|ref|YP_003595150.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caulobacter segnis ATCC
21756]
gi|295433360|gb|ADG12532.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caulobacter segnis ATCC
21756]
Length = 187
Score = 277 bits (709), Expect = 7e-73, Method: Composition-based stats.
Identities = 85/182 (46%), Positives = 121/182 (66%), Gaps = 1/182 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V ++ + D RGWFS+T+ L+E G + FVQDNH S G RGLH+Q+
Sbjct: 6 LAIPEVLLITPARHGDERGWFSETFRQSALEEAGFKAAFVQDNHVRSTTRGIQRGLHYQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KL+RC+ G IFD+AVDIR+ SPTYG WV E+SA N Q+ +P GFAHG++TL
Sbjct: 66 PPHAQDKLLRCVVGAIFDVAVDIRKGSPTYGQWVGAELSAENRQQLLVPKGFAHGYVTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
EV+YKVTD+Y+ + + V W D ++ I WP+ + + + +++D P L +IDSPF
Sbjct: 126 DACEVLYKVTDYYAPQAEGAVRWSDPAVGIDWPIPASEITA-NDRDNAAPLLAEIDSPFV 184
Query: 181 YD 182
Y+
Sbjct: 185 YE 186
>gi|16803122|ref|NP_464607.1| hypothetical protein lmo1082 [Listeria monocytogenes EGD-e]
gi|47094940|ref|ZP_00232553.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes str.
1/2a F6854]
gi|224500276|ref|ZP_03668625.1| hypothetical protein LmonF1_11619 [Listeria monocytogenes Finland
1988]
gi|224502604|ref|ZP_03670911.1| hypothetical protein LmonFR_08794 [Listeria monocytogenes FSL
R2-561]
gi|254823648|ref|ZP_05228649.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes FSL
J1-194]
gi|254828460|ref|ZP_05233147.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes FSL
N3-165]
gi|254830148|ref|ZP_05234803.1| hypothetical protein Lmon1_02265 [Listeria monocytogenes 10403S]
gi|254898744|ref|ZP_05258668.1| hypothetical protein LmonJ_02975 [Listeria monocytogenes J0161]
gi|254911767|ref|ZP_05261779.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes J2818]
gi|254936093|ref|ZP_05267790.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes F6900]
gi|255521991|ref|ZP_05389228.1| hypothetical protein LmonocFSL_12347 [Listeria monocytogenes FSL
J1-175]
gi|284801414|ref|YP_003413279.1| hypothetical protein LM5578_1165 [Listeria monocytogenes 08-5578]
gi|284994556|ref|YP_003416324.1| hypothetical protein LM5923_1119 [Listeria monocytogenes 08-5923]
gi|16410484|emb|CAC99160.1| lmo1082 [Listeria monocytogenes EGD-e]
gi|47016558|gb|EAL07478.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes str.
1/2a F6854]
gi|258600856|gb|EEW14181.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes FSL
N3-165]
gi|258608683|gb|EEW21291.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes F6900]
gi|284056976|gb|ADB67917.1| hypothetical protein LM5578_1165 [Listeria monocytogenes 08-5578]
gi|284060023|gb|ADB70962.1| hypothetical protein LM5923_1119 [Listeria monocytogenes 08-5923]
gi|293589719|gb|EFF98053.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes J2818]
gi|293592871|gb|EFG00632.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes FSL
J1-194]
Length = 186
Score = 277 bits (709), Expect = 7e-73, Method: Composition-based stats.
Identities = 75/181 (41%), Positives = 112/181 (61%), Gaps = 3/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+++K + F D RG+F ++Y+ K E G+ F+QDNHS S + G +RG+H+Q
Sbjct: 7 KLAGVKLVKPKVFGDHRGFFMESYNEKAFHEAGIDMKFIQDNHSLSVEAGVLRGMHYQTN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL+R G I+D+ VD+R+ SPTYG W +S N Q+ +P GFAHGF T+
Sbjct: 67 PKAQTKLIRVATGAIYDVVVDMRKGSPTYGEWEGYILSEANKHQLLVPQGFAHGFCTITE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N V+YKV YS E+D+G+A+ D ++ITWP T +S+KD P L ++ F +
Sbjct: 127 NVNVLYKVDQLYSPENDAGIAYDDPDLNITWP---TDKLILSDKDTKHPRLKDAENNFVW 183
Query: 182 D 182
+
Sbjct: 184 E 184
>gi|167748151|ref|ZP_02420278.1| hypothetical protein ANACAC_02895 [Anaerostipes caccae DSM 14662]
gi|317472316|ref|ZP_07931644.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anaerostipes sp. 3_2_56FAA]
gi|167652143|gb|EDR96272.1| hypothetical protein ANACAC_02895 [Anaerostipes caccae DSM 14662]
gi|316900273|gb|EFV22259.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anaerostipes sp. 3_2_56FAA]
Length = 184
Score = 277 bits (709), Expect = 7e-73, Method: Composition-based stats.
Identities = 80/173 (46%), Positives = 103/173 (59%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ F D RG+F +TY+ K +E GL FVQDN S S G +RGLHFQ+
Sbjct: 10 EIEGLHIIEPAVFPDERGYFMETYNQKDFEEAGLGMTFVQDNQSMSVK-GVLRGLHFQKQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G++FD+AVD+R++S TYG W +E+SA N Q YIP GFAHGF+ L
Sbjct: 69 -YPQGKLVRVVRGKVFDVAVDLRKDSQTYGKWFGVELSAENKKQFYIPEGFAHGFLVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E YK TDFY + G+ W D I I WP + +SEKDQ L
Sbjct: 128 EAEFCYKCTDFYHPGDEGGIKWDDPDIGIEWPFEEGTELVISEKDQKWSGLKD 180
>gi|168481295|gb|ACA24785.1| RmlC [Shigella dysenteriae]
Length = 183
Score = 277 bits (709), Expect = 7e-73, Method: Composition-based stats.
Identities = 79/174 (45%), Positives = 115/174 (66%), Gaps = 3/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKSCK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T++Y+ ++ + W DK + I WP L T+ +S+KD P L++
Sbjct: 126 ETAEFVYKTTNYYAPGYEGSIIWNDKILSIDWPEL-TLEYILSDKDLKAPILSE 178
>gi|329925154|ref|ZP_08280097.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. HGF5]
gi|328939987|gb|EGG36320.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. HGF5]
Length = 185
Score = 277 bits (709), Expect = 7e-73, Method: Composition-based stats.
Identities = 81/182 (44%), Positives = 118/182 (64%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+ ++ +D RG+F ++++ ++LK G+ D F+QDNHS S + G IRGLH+Q
Sbjct: 7 KLQGVKRIEPAVHQDHRGFFMESFNDRVLKGCGINDHFIQDNHSMSREAGVIRGLHYQLS 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KL+R ++G I+D+ VDIR SPTYG W +SA N +Q+ +P GFAHGF TL
Sbjct: 67 PEGQTKLIRVVSGAIYDVVVDIRSGSPTYGQWQGFILSAANFIQLLVPKGFAHGFCTLVH 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+TEVIYKV +YS EHD G+AW D ++I WP+ P +S+KD P L ++ + Y
Sbjct: 127 DTEVIYKVDAYYSPEHDRGIAWNDPDLNIDWPVNK---PVLSDKDSKHPRLALAENNYIY 183
Query: 182 DG 183
+G
Sbjct: 184 EG 185
>gi|119947064|ref|YP_944744.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Psychromonas ingrahamii 37]
gi|119865668|gb|ABM05145.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Psychromonas ingrahamii 37]
Length = 185
Score = 276 bits (708), Expect = 8e-73, Method: Composition-based stats.
Identities = 74/174 (42%), Positives = 108/174 (62%), Gaps = 5/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE--LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
I V+I++ F D RG+F +T++ KL ++ G +FVQDNHS S G +RGLH+Q
Sbjct: 7 KIPDVKIIEPAVFGDERGFFMETWNQKLFEKEVTGKPTLFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR I+G +FD+AVDIR++S T+G WV + +S N Q+++P GFAHGF+
Sbjct: 66 TEN-TQGKLVRVISGEVFDVAVDIRKSSATFGQWVGVTLSEENKRQLWVPEGFAHGFLVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
E +YK TD+Y+ + + W D I I WP+ + + P +SEKD+N L
Sbjct: 125 SDEAEFVYKCTDYYNPTSEVSILWNDPDIGIEWPIKEEV-PLLSEKDKNAKLLK 177
>gi|283785858|ref|YP_003365723.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Citrobacter rodentium ICC168]
gi|282949312|emb|CBG88923.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Citrobacter rodentium ICC168]
Length = 182
Score = 276 bits (708), Expect = 8e-73, Method: Composition-based stats.
Identities = 81/175 (46%), Positives = 112/175 (64%), Gaps = 4/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFMESFNQKVFEEAIGRKVDFVQDNHSKSSK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQAKLVRCIAG +FD+AVDIR +SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 APYAQAKLVRCIAGEVFDVAVDIRESSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++Y E D G+ W D I I W + +S+KD+ P + +
Sbjct: 126 ETAEFVYKTTNYYHPECDRGIRWDDAYIGIKWG--NDYNVKLSDKDKKNPTMKDV 178
>gi|225848194|ref|YP_002728357.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644619|gb|ACN99669.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 189
Score = 276 bits (708), Expect = 8e-73, Method: Composition-based stats.
Identities = 87/181 (48%), Positives = 114/181 (62%), Gaps = 4/181 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I+K + F D RG+F + Y K G+ FVQDNHS S G +RGLH+Q
Sbjct: 9 EIPEVLIVKPKVFSDDRGFFLEFYKESEFKAAGIDTNFVQDNHSKSVK-GVLRGLHYQLN 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVRCI G+IFD+AVDIR+ SPT+G +V++E+S N L ++IP GFAHGF+ L
Sbjct: 68 PKAQGKLVRCIKGKIFDVAVDIRKKSPTFGKYVAVELSEENKLMLWIPKGFAHGFLVLSE 127
Query: 122 NTEVIYKVTD-FYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
E+IYKV+ YS EHD + W D I+I WP+ P +S+KD+ PFL + F
Sbjct: 128 EAEIIYKVSGSEYSPEHDRAIRWNDPDINIKWPI--DTYPILSQKDEKAPFLKDAEINFI 185
Query: 181 Y 181
Y
Sbjct: 186 Y 186
>gi|168229416|ref|ZP_02654474.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|194469870|ref|ZP_03075854.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194456234|gb|EDX45073.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|205335685|gb|EDZ22449.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
Length = 182
Score = 276 bits (708), Expect = 8e-73, Method: Composition-based stats.
Identities = 82/174 (47%), Positives = 112/174 (64%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ + ++L G + FVQDNHS S +RGLHFQR
Sbjct: 8 IPDVLILEPKVFGDERGFFFESYNQQTFEKLIGRKITFVQDNHSKS-KKNVLRGLHFQRG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 67 ANAQGKLVRCAIGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++YS + + W D++I I WP + LP +S KD P L+Q
Sbjct: 127 YAEFLYKATNYYSPSSEGSILWNDETIGIEWPF--SQLPELSAKDAAAPLLHQA 178
>gi|320352680|ref|YP_004194019.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfobulbus propionicus DSM
2032]
gi|320121182|gb|ADW16728.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfobulbus propionicus DSM
2032]
Length = 183
Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats.
Identities = 84/175 (48%), Positives = 116/175 (66%), Gaps = 4/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ + F D RG+F ++Y+ ++ ++L GL FVQDNHS S G +RGLH+Q P
Sbjct: 9 IADLLIIEPKIFGDERGFFYESYNERVFRQLTGLTVNFVQDNHSRS-TRGVLRGLHYQLP 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVRC+ G +FD+AVDIR+ SPT+G WV L +SA+N Q +IP GFAHGF+ L
Sbjct: 68 PAAQGKLVRCVVGEVFDVAVDIRKQSPTFGRWVGLHLSADNKRQFWIPPGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK T++Y ++D G+ W D + ITWPL DT P +SEKD P +
Sbjct: 128 TAEFLYKTTEYYQPQYDRGIRWNDPDLAITWPLHDT--PQLSEKDCTAPLFTAAE 180
>gi|254853034|ref|ZP_05242382.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes FSL
R2-503]
gi|300765929|ref|ZP_07075902.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes FSL
N1-017]
gi|258606382|gb|EEW18990.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes FSL
R2-503]
gi|300513391|gb|EFK40465.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria monocytogenes FSL
N1-017]
Length = 186
Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats.
Identities = 75/181 (41%), Positives = 113/181 (62%), Gaps = 3/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+++K + F D RG+F ++Y+ K E+G+ F+QDNHS S + G +RG+H+Q
Sbjct: 7 KLAGVKLVKPKVFGDHRGFFMESYNEKAFHEVGIDMKFIQDNHSLSVEAGVLRGMHYQTN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL+R G I+D+ VD+R+ SPTYG W +S N Q+ +P GFAHGF T+
Sbjct: 67 PKAQTKLIRVATGAIYDVVVDMRKGSPTYGEWEGYILSEANKHQLLVPQGFAHGFCTITE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N V+YKV YS E+D+G+A+ D ++ITWP T +S+KD P L ++ F +
Sbjct: 127 NVNVLYKVDQLYSPENDAGIAYDDPDLNITWP---TDKLILSDKDTKHPRLKDAENNFVW 183
Query: 182 D 182
+
Sbjct: 184 E 184
>gi|261409578|ref|YP_003245819.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. Y412MC10]
gi|261286041|gb|ACX68012.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. Y412MC10]
Length = 182
Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats.
Identities = 80/180 (44%), Positives = 116/180 (64%), Gaps = 3/180 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + +++ D+RG+F ++Y+ L ++ L F+QDN S S D G +RGLH+Q
Sbjct: 6 LKLLGASLIEPIVHNDNRGFFMESYNQHLFEQNQLDCSFIQDNQSLSKDAGVVRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KL+R ++G I+D+ VDIR+NS TYG W+ + +S +N Q+ +P GFAHGF TL
Sbjct: 66 NPKAQTKLIRVLSGAIYDVIVDIRKNSATYGQWIGVILSEHNHRQLLVPKGFAHGFCTLV 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+TEV+YKV D+YS EHD G+ W D + I WP+ + P +SEKDQN P L + FE
Sbjct: 126 PDTEVLYKVDDYYSPEHDRGILWNDPELAIDWPMSN---PILSEKDQNHPLLKNAELNFE 182
>gi|167753452|ref|ZP_02425579.1| hypothetical protein ALIPUT_01726 [Alistipes putredinis DSM 17216]
gi|167658077|gb|EDS02207.1| hypothetical protein ALIPUT_01726 [Alistipes putredinis DSM 17216]
Length = 190
Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats.
Identities = 74/179 (41%), Positives = 105/179 (58%), Gaps = 2/179 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ + F D RG+F ++YS + + FVQDN S S G +RGLHFQ+
Sbjct: 8 IKDVVIIEPQVFGDDRGYFFESYSQQQFDQAVRPVHFVQDNESKS-RRGVLRGLHFQKGA 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ+KLVR + GR+ D+AVDIRR SPT+G V++E++A N Q+++P GFAHGF L
Sbjct: 67 AAQSKLVRVVQGRVLDVAVDIRRGSPTFGKHVAVELTAENHRQLFVPRGFAHGFSVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +FY+ + + +AW D + I W L +S KD+ P L D F+Y
Sbjct: 127 AVFQYKCDNFYAPQSEGAIAWNDPDLGIDWQLP-AEEAILSPKDRAHPRLKDADELFDY 184
>gi|167765914|ref|ZP_02437967.1| hypothetical protein CLOSS21_00405 [Clostridium sp. SS2/1]
gi|167712412|gb|EDS22991.1| hypothetical protein CLOSS21_00405 [Clostridium sp. SS2/1]
Length = 194
Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats.
Identities = 79/173 (45%), Positives = 107/173 (61%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + +++ F+D RG+F +TY+ +KE GL VFVQDN S S G +RGLHFQ+
Sbjct: 20 DIEGLYVIEPTVFKDERGYFVETYNQNDMKEAGLDMVFVQDNQSMS-TRGVLRGLHFQKQ 78
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G++FD+AVD+R +S TYG W +E+SA N Q YIP GFAHGF+ L
Sbjct: 79 -FPQGKLVRVVRGKVFDVAVDLRSDSKTYGKWFGVELSAENMKQFYIPEGFAHGFLVLSD 137
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E YK TDFY + G+ W D I + WPL + + +SEKDQ L
Sbjct: 138 EAEFCYKCTDFYHPGDEGGLTWNDPEIGVEWPLEEGVDLIISEKDQKWKGLKD 190
>gi|84684395|ref|ZP_01012296.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Maritimibacter alkaliphilus
HTCC2654]
gi|84667374|gb|EAQ13843.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Rhodobacterales bacterium
HTCC2654]
Length = 188
Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats.
Identities = 86/178 (48%), Positives = 119/178 (66%), Gaps = 2/178 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V + ++ D+RG+F++T++ + L G+ FVQDNHS S GT+RGLH Q PP
Sbjct: 8 IPGVFVFTPERYGDARGFFAETWNRRQLSAAGVDIDFVQDNHSVSATAGTLRGLHMQTPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVRC GR+FD+AVDIR +SPT+ WV +E+SA NG Q+ +P GF HGF+T E +
Sbjct: 68 FAQDKLVRCGRGRLFDVAVDIRADSPTFRQWVGVELSAENGKQLLVPRGFLHGFVTREPD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
TEV+YK +++Y+ E D V + D I I W L D P +S+KD PFL +D+PF
Sbjct: 128 TEVVYKCSNYYAPECDRAVRFDDPDIGIDWGLTDA--PVLSDKDAKAPFLRDLDNPFT 183
>gi|310829413|ref|YP_003961770.1| dTDP-4-dehydrorhamnose 3 [Eubacterium limosum KIST612]
gi|308741147|gb|ADO38807.1| dTDP-4-dehydrorhamnose 3 [Eubacterium limosum KIST612]
Length = 186
Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats.
Identities = 79/180 (43%), Positives = 109/180 (60%), Gaps = 3/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ F D RG+F +TY+ + ++ GL F+QDN S S G +RGLHFQR
Sbjct: 10 QIEGLVIVQPSVFGDERGYFMETYNKEEFEKQGLNMTFIQDNESKS-KKGVLRGLHFQRK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+Q KLVRC G ++D+ VD+R+ SPTYG W +E+SA N YIP GFAHGF+ L
Sbjct: 69 -YSQGKLVRCTQGAVWDVGVDLRKGSPTYGEWAGVELSAENKTMFYIPEGFAHGFVVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK T+ Y+ E+D G+ W D I + WP+ + + +SEKDQ PFL I E+
Sbjct: 128 EATFNYKCTNLYAPEYDGGIRWNDPEIGVEWPV-EGLELLLSEKDQKQPFLKDIKDTLEF 186
>gi|264680360|ref|YP_003280270.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Comamonas testosteroni CNB-2]
gi|262210876|gb|ACY34974.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Comamonas testosteroni CNB-2]
Length = 183
Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats.
Identities = 83/177 (46%), Positives = 115/177 (64%), Gaps = 3/177 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ + F D+RG+F +++ L + G F+QDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVFLIEPKVFGDARGFFLESFRQDLFNQATGTNHEFIQDNHSRSSK-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P+AQ KLVR I+G +FD+AVDIRR+SPT+G WV E+SA N Q++IP GFAHGF+ L
Sbjct: 65 LSPHAQGKLVRVISGTVFDVAVDIRRSSPTFGQWVGAELSAENHRQLWIPPGFAHGFVVL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK T +Y+ E D G+ W D I I WP LD I S+SEKD+N P Q +
Sbjct: 125 SDTADFVYKTTAYYAPESDRGLLWNDPDIAIAWPQLD-IEFSLSEKDRNQPAFKQAE 180
>gi|315640669|ref|ZP_07895773.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus italicus DSM
15952]
gi|315483565|gb|EFU74057.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus italicus DSM
15952]
Length = 193
Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats.
Identities = 79/182 (43%), Positives = 117/182 (64%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ F D RG+F+++YS K KE G+ F+QDNHS S + G +RGLHFQ+
Sbjct: 10 KLTDVKIIEPVVFGDHRGFFTESYSDKDFKEAGIDFDFIQDNHSLSTEPGVLRGLHFQKG 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ VDIR+ SPTYG W +SA+N Q+ +P G+AHGF+TL
Sbjct: 70 QAAQTKLIRVVTGAVLDVIVDIRKGSPTYGEWEGYILSASNHRQLLVPKGYAHGFVTLTD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS--PF 179
N +YK ++Y+ E D G+A+ D + ITWP+ D +SEKD++ P L + ++ PF
Sbjct: 130 NVNFLYKCDNYYNAEADGGIAFDDPELAITWPI-DQSKAILSEKDKHHPTLKEFEAENPF 188
Query: 180 EY 181
Y
Sbjct: 189 VY 190
>gi|226943712|ref|YP_002798785.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Azotobacter vinelandii DJ]
gi|226718639|gb|ACO77810.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Azotobacter vinelandii DJ]
Length = 182
Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats.
Identities = 75/177 (42%), Positives = 112/177 (63%), Gaps = 4/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I+ + + + + F D RG+F ++Y+ + + +G FVQDNHS S G +RGLH+Q
Sbjct: 6 LDISGLVLFEPKVFGDDRGFFFESYNQRHFEDAVGRAVNFVQDNHSRSAQ-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
PP+AQ KLVR + G +FD+AVDIR++SPT+G WV + +SA N Q +IP GFAHGF+TL
Sbjct: 65 LPPHAQGKLVRVVQGEVFDVAVDIRKSSPTFGQWVGVLLSAENKRQFWIPEGFAHGFVTL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ + + + W D ++ I W P +S KDQ P L +
Sbjct: 125 SETAEFLYKTTDYYAPDSERSILWNDPALAIDW--RGIEAPLLSGKDQKAPLLANAE 179
>gi|157158061|ref|YP_001463389.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli E24377A]
gi|157080091|gb|ABV19799.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli E24377A]
Length = 182
Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats.
Identities = 80/173 (46%), Positives = 113/173 (65%), Gaps = 4/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKSCK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
E +YK T++Y E D G+ W D+ + ITWP + + ++S KDQ P
Sbjct: 126 ETAEFVYKTTNYYHPESDRGIRWDDEELSITWPRGNEL--NLSNKDQQHPSFQ 176
>gi|291562823|emb|CBL41639.1| dTDP-4-dehydrorhamnose 3,5-epimerase [butyrate-producing bacterium
SS3/4]
Length = 191
Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats.
Identities = 83/182 (45%), Positives = 112/182 (61%), Gaps = 5/182 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M I + +++ F D RG+F +TY+ KE GL VFVQDN S S G +RGLHFQ+
Sbjct: 14 MVIEGLHVIEPTVFNDERGYFMETYNQNDFKEAGLNMVFVQDNQSMSVK-GVLRGLHFQK 72
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+ Q KLVR + G +FD+AVD+R +S TYG W +E+SA N Q YIP GFAHGF+ L
Sbjct: 73 Q-FPQGKLVRAVRGTVFDVAVDLRTHSKTYGKWFGVELSAENKKQFYIPEGFAHGFVVLS 131
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
E YK TDFY + G+AW D++I + WP+ + +SEKDQ P +I F+
Sbjct: 132 DEAEFAYKCTDFYHPGDEGGLAWNDETIGVKWPITPDMQLIISEKDQKWPGFKEI---FK 188
Query: 181 YD 182
+D
Sbjct: 189 FD 190
>gi|54873720|gb|AAV41069.1| RmlC [Shigella boydii]
gi|72003794|gb|AAZ65834.1| putative protein [Escherichia coli]
gi|115503038|gb|ABI98963.1| RmlC [Escherichia coli]
gi|332343819|gb|AEE57153.1| dTDP-4-dehydrorhamnose 3,5-epimerase RfbC [Escherichia coli UMNK88]
Length = 181
Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats.
Identities = 81/167 (48%), Positives = 112/167 (67%), Gaps = 4/167 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKSSK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E +YK T++Y + GV W D IDI WPL+ + P +SEKD+
Sbjct: 126 ETAEFLYKTTNYYHPISERGVKWDDPCIDIKWPLVSS--PLLSEKDK 170
>gi|242400018|ref|YP_002995443.1| RfbC dTDP-4-dehydrorhamnose 3,5-epimerase [Thermococcus sibiricus
MM 739]
gi|242266412|gb|ACS91094.1| RfbC dTDP-4-dehydrorhamnose 3,5-epimerase [Thermococcus sibiricus
MM 739]
Length = 185
Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats.
Identities = 84/175 (48%), Positives = 117/175 (66%), Gaps = 4/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V ++K + FED RG+F +TY ++ G++ F+QDNHS S G +RGLHFQR
Sbjct: 8 LEIPDVILIKPKVFEDERGFFMETYKKPDFEKAGIKGDFIQDNHSKS-KYGVLRGLHFQR 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQAK+VRCI G I+D+AVD+R++SPT+G WV + +S +N Q+YIP GFAHGF+ L
Sbjct: 67 EPYAQAKIVRCIRGVIYDVAVDLRKDSPTFGKWVGVILSEHNKWQLYIPKGFAHGFLVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
EV+YKV + Y+ ++ G+ W D I I WP+ P+VSEKD P L +
Sbjct: 127 DVAEVVYKVDNVYAPNYEGGIIWNDPDIGIDWPVDK---PTVSEKDMKWPTLREA 178
>gi|188588633|ref|YP_001922562.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum E3 str.
Alaska E43]
gi|188498914|gb|ACD52050.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum E3 str.
Alaska E43]
Length = 192
Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats.
Identities = 82/185 (44%), Positives = 111/185 (60%), Gaps = 6/185 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I+ V I++ + F D+RG+F +TY+ + E GL FVQDN S S G +RGLHFQ+
Sbjct: 10 SIDGVYIIEPKVFGDNRGYFMETYNREQFLEAGLDMTFVQDNESRS-TKGVLRGLHFQKK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
++Q KLVR G +FD+AVD+R SPTYG + ++ ++ N Q YIP GFAHGF+ L
Sbjct: 69 -HSQGKLVRATKGEVFDVAVDLRHGSPTYGKYEAVILTEENKKQFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID----S 177
YK TD Y+ E+D GV W D I+I WPL +SEKD+ P L +D S
Sbjct: 128 EAVFNYKCTDLYAPEYDGGVMWNDNDINIKWPLDKIEDIVLSEKDKVHPNLKDLDLKNYS 187
Query: 178 PFEYD 182
F Y
Sbjct: 188 DFMYK 192
>gi|73809580|gb|AAZ85706.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli]
Length = 178
Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats.
Identities = 80/175 (45%), Positives = 114/175 (65%), Gaps = 4/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKSSK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ +YK T++Y E +SG+ W D +IDI WP+ + P +S KD +I
Sbjct: 126 ETADFLYKTTNYYHPESESGLLWNDYTIDIAWPIENE--PLLSAKDLKARRFLEI 178
>gi|239503785|ref|ZP_04663095.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Acinetobacter
baumannii AB900]
Length = 188
Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats.
Identities = 78/180 (43%), Positives = 112/180 (62%), Gaps = 6/180 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-----DVFVQDNHSFSFDCGTIRGL 56
I + IL+ + F D RGWF ++++ K ++ + FVQDNHS S G +RGL
Sbjct: 7 KIKGLLILEPKVFGDDRGWFMESFNQKAFEQALHERGLDIPQFVQDNHSLS-QKGVLRGL 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H+Q PYAQ KLVR + G+ +D+AVDIR++SPT+G WV +E++ N Q +IP GFAHGF
Sbjct: 66 HYQLNPYAQGKLVRVVQGKAWDVAVDIRKSSPTFGQWVGVELTGENHKQFWIPAGFAHGF 125
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ LE NT+ +YK T++Y+ E + + W D SI I WPL + VS+KD+ L
Sbjct: 126 VALEDNTQFLYKTTNYYNKESEGAIVWNDPSIAIDWPLSNINQVLVSDKDKVASKLEDAK 185
>gi|14590334|ref|NP_142400.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pyrococcus horikoshii OT3]
gi|3256819|dbj|BAA29502.1| 188aa long hypothetical dTDP-4-dehydrorhamnose 3,5-epimerase
[Pyrococcus horikoshii OT3]
Length = 188
Score = 274 bits (703), Expect = 3e-72, Method: Composition-based stats.
Identities = 84/175 (48%), Positives = 118/175 (67%), Gaps = 4/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V ++K + FED RG+F +TY ++ G++ FVQDNHS S G +RGLHFQR
Sbjct: 11 LEIPDVVLIKPKVFEDERGFFMETYKKSDFEKAGIKGEFVQDNHSKS-KYGVLRGLHFQR 69
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
YAQAK+VRCI G I+D+AVD+RRNSPT+G +V + +S N Q+YIP GFAHGF+ L
Sbjct: 70 GSYAQAKIVRCIRGVIYDVAVDLRRNSPTFGKYVGVILSEYNKYQLYIPRGFAHGFVVLS 129
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
EV+YKV + Y+ +++ G+ W D + I WP+ D P +SEKD+ P L ++
Sbjct: 130 DVAEVVYKVDNVYAPDYEGGLIWNDPDVGIKWPIED---PILSEKDKKWPTLREL 181
>gi|115374685|ref|ZP_01461963.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stigmatella aurantiaca
DW4/3-1]
gi|310820811|ref|YP_003953169.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stigmatella aurantiaca
DW4/3-1]
gi|115368353|gb|EAU67310.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stigmatella aurantiaca
DW4/3-1]
gi|309393883|gb|ADO71342.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stigmatella aurantiaca
DW4/3-1]
Length = 184
Score = 274 bits (703), Expect = 3e-72, Method: Composition-based stats.
Identities = 76/181 (41%), Positives = 108/181 (59%), Gaps = 4/181 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V +++ + F D RG+F +T+ +K + G+ FVQDN+S S GT+RGLHFQ P
Sbjct: 8 IPGVLLIEPKVFGDDRGFFLETFHAKRYADAGIPGPFVQDNYSRSAR-GTLRGLHFQ-EP 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLV+ +AG ++D+AVD+RR SPT+G WV +E+SA N Q+++P GFAHGF
Sbjct: 66 QAQGKLVQVVAGAVYDVAVDVRRGSPTFGKWVGVELSAENRRQLWVPPGFAHGFCVTSEF 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
+ YK T Y+ E++ + W D + I WPL P +S KD P L Y+
Sbjct: 126 ADFQYKCTALYAPENERSILWNDPELAIPWPLSGA--PKLSAKDAAAPRLKDAPLLPAYE 183
Query: 183 G 183
G
Sbjct: 184 G 184
>gi|254478574|ref|ZP_05091948.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Carboxydibrachium pacificum
DSM 12653]
gi|214035503|gb|EEB76203.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Carboxydibrachium pacificum
DSM 12653]
Length = 185
Score = 274 bits (703), Expect = 3e-72, Method: Composition-based stats.
Identities = 80/177 (45%), Positives = 109/177 (61%), Gaps = 2/177 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++T FED+RG+F ++Y+ + K G+ VFVQDN S S G +RGLHFQ+
Sbjct: 10 EIEGLYIIETGIFEDNRGYFMESYNYRDFKAAGIDAVFVQDNQSKS-KKGVLRGLHFQKK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R+NS TYG WV + +S N Q YIP GFAHGF+ L
Sbjct: 69 -HPQGKLVRVLKGEVFDVAVDLRKNSKTYGKWVGVILSDKNKRQFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
E YK TDFY + + G+ W D I+I WPL +SEKD+ P L ++
Sbjct: 128 EAEFFYKCTDFYYPDDEGGIIWNDPDINIQWPLEGIEEVILSEKDKKWPRLRDLEEW 184
>gi|317132491|ref|YP_004091805.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ethanoligenens harbinense
YUAN-3]
gi|315470470|gb|ADU27074.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ethanoligenens harbinense
YUAN-3]
Length = 185
Score = 274 bits (703), Expect = 3e-72, Method: Composition-based stats.
Identities = 85/182 (46%), Positives = 116/182 (63%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V I++ R F D+RGWF +TYS + L LG+ FVQDN SFS GT+RGLHFQ
Sbjct: 7 ELDGVLIVEPRVFGDNRGWFMETYSKEKLAPLGVTVDFVQDNQSFSAQKGTLRGLHFQMH 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ+KL+RC G I D+AVDIR+ SP Y WV++E+SA N Q++IP GFAHGF+TL
Sbjct: 67 PKAQSKLLRCTHGAILDVAVDIRKGSPNYTKWVAVELSAENKRQLFIPAGFAHGFVTLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ EV YKV ++Y+ + D + + D +I + W + P +S+KD P L D F Y
Sbjct: 127 DVEVQYKVDEYYAPDCDRSIRFDDPAIGVNWGIK---APILSKKDLGAPLLADSDCNFTY 183
Query: 182 DG 183
Sbjct: 184 PA 185
>gi|73809592|gb|AAZ85717.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli]
gi|323948402|gb|EGB44386.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli H120]
gi|324119067|gb|EGC12956.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli E1167]
Length = 176
Score = 274 bits (703), Expect = 3e-72, Method: Composition-based stats.
Identities = 81/172 (47%), Positives = 117/172 (68%), Gaps = 4/172 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFFESFNQKIFEEAVGRKVEFVQDNHSKS-TKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G ++D+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVYDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
E +YK T++Y E + G+ W DK+I+I WP++D +P +S+KD N L
Sbjct: 126 ETAEFVYKTTNYYHPESERGIIWDDKNINIHWPIVD--IPILSKKDHNNTSL 175
>gi|239831405|ref|ZP_04679734.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ochrobactrum intermedium LMG
3301]
gi|239823672|gb|EEQ95240.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ochrobactrum intermedium LMG
3301]
Length = 183
Score = 274 bits (703), Expect = 4e-72, Method: Composition-based stats.
Identities = 89/176 (50%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ ++ + + RKF D RG+FS+TY++K E G+ FVQDNHS+S G +RGLH+Q
Sbjct: 6 LELDGLLEISPRKFGDDRGFFSETYNAKSFAEAGIDLTFVQDNHSYSAARGVVRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLV G I D+AVDIR+ SPT+G WV+LE+SA QI +P GFAHGFMTL
Sbjct: 66 PPFAQDKLVHVTRGAILDVAVDIRKGSPTFGKWVALEVSAEKWNQILVPKGFAHGFMTLV 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+TEVIYKVT++YS EHD + + D +I I WP+ + + +S+KDQ P L D
Sbjct: 126 EHTEVIYKVTNYYSPEHDRSIRFDDPAIGIDWPIAPSGV-QLSDKDQKAPMLADAD 180
>gi|317498846|ref|ZP_07957132.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lachnospiraceae bacterium
5_1_63FAA]
gi|316893874|gb|EFV16070.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lachnospiraceae bacterium
5_1_63FAA]
Length = 184
Score = 274 bits (703), Expect = 4e-72, Method: Composition-based stats.
Identities = 80/173 (46%), Positives = 108/173 (62%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + +++ F+D RG+F +TY+ +KE GL VFVQDN S S G +RGLHFQ+
Sbjct: 10 DIEGLYVIEPTVFKDERGYFVETYNQNDMKEAGLDMVFVQDNQSMS-TRGVLRGLHFQKQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G++FD+AVD+R +S TYG W +E+SA N Q YIP GFAHGF+ L
Sbjct: 69 -FPQGKLVRVVRGKVFDVAVDLRSDSKTYGKWFGVELSAENMKQFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E YK TDFY + G+AW D I + WPL + + +SEKDQ L
Sbjct: 128 EAEFCYKCTDFYHPGDEGGLAWNDPEIGVEWPLEEGVDLIISEKDQKWKGLKD 180
>gi|289577889|ref|YP_003476516.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoanaerobacter italicus
Ab9]
gi|289527602|gb|ADD01954.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoanaerobacter italicus
Ab9]
Length = 183
Score = 274 bits (703), Expect = 4e-72, Method: Composition-based stats.
Identities = 81/174 (46%), Positives = 108/174 (62%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++T FED+RG+F ++Y+ K K G+ VFVQDN S S G +RGLHFQ+
Sbjct: 10 EIEGLYIIETGVFEDNRGYFMESYNYKDFKAAGIDAVFVQDNQSKS-KKGVLRGLHFQKK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R+NS TYG WV + +S N Q YIP GFAHGF+ L
Sbjct: 69 -HPQGKLVRVLKGEVFDVAVDLRKNSKTYGKWVGVILSDKNKRQFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YK TDFY + + G+ W D I+I WPL +SEKD+ P L +
Sbjct: 128 EAEFFYKCTDFYYPDDEGGIIWNDPDINIQWPLEGIEEVILSEKDKKWPRLRDL 181
>gi|254286303|ref|ZP_04961262.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae AM-19226]
gi|150423718|gb|EDN15660.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae AM-19226]
Length = 182
Score = 274 bits (703), Expect = 4e-72, Method: Composition-based stats.
Identities = 77/177 (43%), Positives = 111/177 (62%), Gaps = 6/177 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPAVFGDERGFFMETWNQKRFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 TEN-TQGKLVRVVSGEVFDVAVDIRKDSPTFGKWVGVYLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TDFY+ + + + W D +I I WP+ +T P +SEKD L ++
Sbjct: 125 SDEAEFVYKCTDFYNPKAEHSIRWDDDTIGIKWPITET--PLLSEKDSVGKLLKDVE 179
>gi|16127863|ref|NP_422427.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caulobacter crescentus CB15]
gi|221236684|ref|YP_002519121.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caulobacter crescentus
NA1000]
gi|13425385|gb|AAK25595.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caulobacter crescentus CB15]
gi|220965857|gb|ACL97213.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caulobacter crescentus
NA1000]
Length = 185
Score = 274 bits (702), Expect = 4e-72, Method: Composition-based stats.
Identities = 85/181 (46%), Positives = 120/181 (66%), Gaps = 1/181 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V ++ + D RGWFS+T+ L+E G Q FVQDNH S G RGLH+Q+
Sbjct: 6 LAIPEVLLITPARHGDERGWFSETFRQSALEEAGFQAAFVQDNHVRSTTRGIQRGLHYQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KL+RC+ G IFD+AVDIR+ SPT+G WV E+SA N Q+ +P GFAHG++TL
Sbjct: 66 PPHAQDKLLRCVVGSIFDVAVDIRKGSPTFGHWVGAELSAENRQQLLVPKGFAHGYVTLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
EV+YKVTD+Y+ + + GV W D +I I WP+ + + +++D P L +I++PF
Sbjct: 126 DACEVLYKVTDYYAPQAEGGVRWSDPAIGIEWPIPLNEITA-NDRDNAAPLLAEIETPFA 184
Query: 181 Y 181
Y
Sbjct: 185 Y 185
>gi|325571038|ref|ZP_08146610.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus casseliflavus
ATCC 12755]
gi|325156123|gb|EGC68309.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus casseliflavus
ATCC 12755]
Length = 193
Score = 274 bits (702), Expect = 4e-72, Method: Composition-based stats.
Identities = 78/182 (42%), Positives = 111/182 (60%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V IL+ F D RG+F+++YS +E G+ FVQDNHS S + G +RGLHFQ+
Sbjct: 10 KLTDVLILEPAVFGDHRGFFTESYSQADFQEAGITQTFVQDNHSLSVEAGVLRGLHFQKG 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ VDIR+ SPTYG W +S +N Q+ +P GFAHGFMTL
Sbjct: 70 TAAQTKLIRVVTGAVLDVIVDIRKGSPTYGEWEGYILSESNQRQLLVPKGFAHGFMTLTS 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID--SPF 179
N +YK ++Y + D+G+A+ D + I WP+ +SEKDQ+ P L + +PF
Sbjct: 130 NVNFLYKCDNYYDAQADAGIAFDDPDLAIDWPIAKE-KAILSEKDQHHPTLKAFEEQNPF 188
Query: 180 EY 181
Y
Sbjct: 189 IY 190
>gi|218887778|ref|YP_002437099.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758732|gb|ACL09631.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 196
Score = 274 bits (702), Expect = 4e-72, Method: Composition-based stats.
Identities = 87/189 (46%), Positives = 116/189 (61%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + L+ R F D RG+F +TY L LG+ FVQDNH+ S G +RGLHFQ P
Sbjct: 7 GIPGLLRLEPRVFRDERGFFLETYRRDLFAALGVPAGFVQDNHARSEQPGVLRGLHFQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P QAKLV G +FD+AVD+R SP YG W E+S N ++++P GFAHG+MTLE
Sbjct: 67 PATQAKLVWVTRGSVFDVAVDLRVGSPAYGKWYGCELSERNFARLFVPRGFAHGYMTLEP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+E YKV +YS E D+G+AW D + ITWP + LP +S+KD+ LP L + SPF +
Sbjct: 127 GSEFQYKVDAYYSPERDAGIAWDDPDLGITWPDIAPALPILSDKDRRLPRLRDLQSPFTF 186
Query: 182 DGLPLLSLN 190
+ P +
Sbjct: 187 EPAPPAKAD 195
>gi|254172754|ref|ZP_04879428.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermococcus sp. AM4]
gi|214032910|gb|EEB73738.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermococcus sp. AM4]
Length = 185
Score = 274 bits (702), Expect = 4e-72, Method: Composition-based stats.
Identities = 84/175 (48%), Positives = 117/175 (66%), Gaps = 4/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V ++K + F D RG+F +TY + G++ FVQDNHS S G +RGLHFQR
Sbjct: 8 LEIPDVILIKPKVFGDERGFFMETYKKPDFESAGIKGEFVQDNHSRS-RYGVLRGLHFQR 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQAK+VR + G I+D+AVD+R+NSPT+G WV + +S N Q+YIP GFAHGF+ L
Sbjct: 67 EPYAQAKIVRVVRGVIYDVAVDLRKNSPTFGKWVGVILSEFNKWQLYIPRGFAHGFLVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+VIYKV + Y+ +++ G+ W D +DI WP+ + P VSEKD+ LP L +
Sbjct: 127 DVADVIYKVDNVYAPDYEGGIIWNDPELDIDWPVDE---PIVSEKDRKLPTLREA 178
>gi|307265775|ref|ZP_07547326.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306919170|gb|EFN49393.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 185
Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats.
Identities = 80/177 (45%), Positives = 109/177 (61%), Gaps = 2/177 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++T FED+RG+F ++Y+ + K G+ VFVQDN S S G +RGLHFQ+
Sbjct: 10 EIEGLYIIETGIFEDNRGYFMESYNCRDFKAAGIDAVFVQDNQSKS-KKGVLRGLHFQKK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R+NS TYG WV + +S N Q YIP GFAHGF+ L
Sbjct: 69 -HPQGKLVRVLKGEVFDVAVDLRKNSKTYGKWVGVILSDKNKRQFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
E YK TDFY + + G+ W D I+I WPL +SEKD+ P L ++
Sbjct: 128 EAEFFYKCTDFYYPDDEGGIIWNDPDINIQWPLEGIEEIILSEKDKKWPRLRDLEEW 184
>gi|254168004|ref|ZP_04874852.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aciduliprofundum boonei T469]
gi|289595933|ref|YP_003482629.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aciduliprofundum boonei T469]
gi|197623047|gb|EDY35614.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aciduliprofundum boonei T469]
gi|289533720|gb|ADD08067.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aciduliprofundum boonei T469]
Length = 191
Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats.
Identities = 81/176 (46%), Positives = 118/176 (67%), Gaps = 4/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I++ + FED RG+F +TY ++ G++ F+QDNHS S G +RGLHFQR
Sbjct: 14 EMRDVIIIRPKVFEDERGFFMETYKKDDFEKNGIKGEFLQDNHSHS-KYGVLRGLHFQRE 72
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQAK+VRCI G IFD+AVD+R +SPT+G +V + +S N ++IP GFAHGF+ L
Sbjct: 73 PYAQAKIVRCIKGEIFDVAVDLRESSPTFGKYVGVVLSEKNKKMLFIPRGFAHGFLVLSE 132
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+V+YKV + Y+ E++ G+ W D ++I WP I P +SEKD+N P L ++ +
Sbjct: 133 EADVVYKVDNIYAPEYEGGLIWNDPDVNIEWP---EIKPILSEKDKNWPTLKELKN 185
>gi|219670474|ref|YP_002460909.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfitobacterium hafniense
DCB-2]
gi|219540734|gb|ACL22473.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfitobacterium hafniense
DCB-2]
Length = 186
Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats.
Identities = 86/178 (48%), Positives = 114/178 (64%), Gaps = 3/178 (1%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I++ + F D RGWF + +S + +KE GL+ FVQDNHSFS GT+RGLHFQ+ A
Sbjct: 10 DVYIIEPKVFGDHRGWFMEAWSIQKMKEAGLEYDFVQDNHSFSAQKGTLRGLHFQKGDAA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRC G + D+AVD+R+ SPTY WV++E+SA N Q+ IP G AH F+TL N E
Sbjct: 70 QTKLVRCSRGAVLDVAVDLRKGSPTYKKWVAVELSAENKRQLLIPRGMAHAFLTLTDNVE 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
+YK +FY E D + W D I++TW + + P VSEKD + P L D F Y+
Sbjct: 130 FLYKADNFYCPEADRSIIWNDPEINVTWGIEN---PIVSEKDASAPCLRNSDIDFVYE 184
>gi|315160175|gb|EFU04192.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0312]
Length = 190
Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats.
Identities = 77/182 (42%), Positives = 110/182 (60%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ F D RG+F+++YS E GL FVQDNHS S + G +RGLHFQ+
Sbjct: 7 KLQDVKIIEMDVFGDHRGFFTESYSKAKFAEHGLDFDFVQDNHSLSTEAGVLRGLHFQKG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ VDIR+ SPTYG W +S +N Q+ +P GFAHGF+TL
Sbjct: 67 EAAQTKLIRVVTGAVLDVIVDIRKGSPTYGQWEGYILSEHNHRQLLVPKGFAHGFVTLTP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS--PF 179
N +YK ++Y+ D G+A+ D ++ I WP+ SEKDQ P L + ++ PF
Sbjct: 127 NVNFMYKCDNYYNAAADGGIAFNDPALAIDWPIAPE-KAITSEKDQKHPTLKEFEAENPF 185
Query: 180 EY 181
Y
Sbjct: 186 IY 187
>gi|254168131|ref|ZP_04874978.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aciduliprofundum boonei T469]
gi|197622897|gb|EDY35465.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aciduliprofundum boonei T469]
Length = 191
Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats.
Identities = 82/176 (46%), Positives = 117/176 (66%), Gaps = 4/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I+ + FED RG+F +TY ++ G++ F+QDNHS+S G +RGLHFQR
Sbjct: 14 EIRDVIIITPKVFEDERGFFMETYKKDDFEKNGIKGEFLQDNHSYS-KYGVLRGLHFQRE 72
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQAK+VRCI G IFD+AVD+R +SPT+G +V + +S N ++IP GFAHGF+ L
Sbjct: 73 PYAQAKIVRCIKGEIFDVAVDLRESSPTFGKYVGVVLSEENKKMLFIPRGFAHGFLVLGE 132
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+V+YKV Y+ E++ G+ W D ++I WP I P +SEKD+N P L ++ +
Sbjct: 133 EADVMYKVDSVYAPEYEGGLIWSDPDVNIKWP---EIKPILSEKDKNWPTLRELKN 185
>gi|29376701|ref|NP_815855.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis V583]
gi|227520248|ref|ZP_03950297.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0104]
gi|227555319|ref|ZP_03985366.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis HH22]
gi|229545293|ref|ZP_04434018.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX1322]
gi|229549528|ref|ZP_04438253.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis ATCC
29200]
gi|255972231|ref|ZP_05422817.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis T1]
gi|255975343|ref|ZP_05425929.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis T2]
gi|256617233|ref|ZP_05474079.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis ATCC
4200]
gi|256853643|ref|ZP_05559008.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis T8]
gi|256956580|ref|ZP_05560751.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis DS5]
gi|257079506|ref|ZP_05573867.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis JH1]
gi|257082114|ref|ZP_05576475.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis E1Sol]
gi|257084729|ref|ZP_05579090.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis Fly1]
gi|257087325|ref|ZP_05581686.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis D6]
gi|257090459|ref|ZP_05584820.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis CH188]
gi|257416506|ref|ZP_05593500.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis
AR01/DG]
gi|257419747|ref|ZP_05596741.1| dTDP-4-dehydrorhamnose-3,5-epimerase [Enterococcus faecalis T11]
gi|257422093|ref|ZP_05599083.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis X98]
gi|294779045|ref|ZP_06744458.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis PC1.1]
gi|300861183|ref|ZP_07107270.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TUSoD
Ef11]
gi|307270367|ref|ZP_07551672.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX4248]
gi|307277277|ref|ZP_07558381.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX2134]
gi|307281879|ref|ZP_07562094.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0860]
gi|307286604|ref|ZP_07566696.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0109]
gi|307292430|ref|ZP_07572286.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0411]
gi|312901449|ref|ZP_07760724.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0470]
gi|312903793|ref|ZP_07762966.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0635]
gi|312953335|ref|ZP_07772177.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0102]
gi|29344165|gb|AAO81925.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis V583]
gi|227072327|gb|EEI10290.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0104]
gi|227175530|gb|EEI56502.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis HH22]
gi|229305346|gb|EEN71342.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis ATCC
29200]
gi|229309643|gb|EEN75630.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX1322]
gi|255963249|gb|EET95725.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis T1]
gi|255968215|gb|EET98837.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis T2]
gi|256596760|gb|EEU15936.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis ATCC
4200]
gi|256710586|gb|EEU25629.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis T8]
gi|256947076|gb|EEU63708.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis DS5]
gi|256987536|gb|EEU74838.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis JH1]
gi|256990144|gb|EEU77446.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis E1Sol]
gi|256992759|gb|EEU80061.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis Fly1]
gi|256995355|gb|EEU82657.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis D6]
gi|256999271|gb|EEU85791.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis CH188]
gi|257158334|gb|EEU88294.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis
ARO1/DG]
gi|257161575|gb|EEU91535.1| dTDP-4-dehydrorhamnose-3,5-epimerase [Enterococcus faecalis T11]
gi|257163917|gb|EEU93877.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis X98]
gi|294453875|gb|EFG22264.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis PC1.1]
gi|300850222|gb|EFK77972.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TUSoD
Ef11]
gi|306496559|gb|EFM66120.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0411]
gi|306502315|gb|EFM71596.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0109]
gi|306503833|gb|EFM73055.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0860]
gi|306506207|gb|EFM75373.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX2134]
gi|306513275|gb|EFM81902.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX4248]
gi|310628723|gb|EFQ12006.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0102]
gi|310632867|gb|EFQ16150.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0635]
gi|311291438|gb|EFQ69994.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0470]
gi|315025875|gb|EFT37807.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX2137]
gi|315028190|gb|EFT40122.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX4000]
gi|315033452|gb|EFT45384.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0017]
gi|315035720|gb|EFT47652.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0027]
gi|315146138|gb|EFT90154.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX2141]
gi|315146325|gb|EFT90341.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX4244]
gi|315149175|gb|EFT93191.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0012]
gi|315154455|gb|EFT98471.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0031]
gi|315157127|gb|EFU01144.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0043]
gi|315161848|gb|EFU05865.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0645]
gi|315164320|gb|EFU08337.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX1302]
gi|315171507|gb|EFU15524.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX1342]
gi|315173060|gb|EFU17077.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX1346]
gi|315575180|gb|EFU87371.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis
TX0309B]
gi|315578166|gb|EFU90357.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0630]
gi|315582607|gb|EFU94798.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis
TX0309A]
gi|327535586|gb|AEA94420.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis OG1RF]
Length = 190
Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats.
Identities = 77/182 (42%), Positives = 110/182 (60%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ F D RG+F+++YS E GL FVQDNHS S + G +RGLHFQ+
Sbjct: 7 KLQDVKIIEMDVFGDHRGFFTESYSKAKFAEHGLDFDFVQDNHSLSTEAGVLRGLHFQKG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ VDIR+ SPTYG W +S +N Q+ +P GFAHGF+TL
Sbjct: 67 EAAQTKLIRVVTGAVLDVIVDIRKGSPTYGQWEGYILSEHNHRQLLVPKGFAHGFVTLTP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS--PF 179
N +YK ++Y+ D G+A+ D ++ I WP+ SEKDQ P L + ++ PF
Sbjct: 127 NVNFMYKCDNYYNAAADGGIAFNDPALAIDWPIAPE-KAITSEKDQKHPTLKEFEAENPF 185
Query: 180 EY 181
Y
Sbjct: 186 IY 187
>gi|323481258|gb|ADX80697.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis 62]
Length = 190
Score = 274 bits (701), Expect = 5e-72, Method: Composition-based stats.
Identities = 76/182 (41%), Positives = 110/182 (60%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ F D RG+F+++YS E G+ FVQDNHS S + G +RGLHFQ+
Sbjct: 7 KLQDVKIIEMDVFGDHRGFFTESYSKAKFAEHGIDFDFVQDNHSLSTEAGVLRGLHFQKG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ VDIR+ SPTYG W +S +N Q+ +P GFAHGF+TL
Sbjct: 67 EAAQTKLIRVVTGAVLDVIVDIRKGSPTYGQWEGYILSEHNHRQLLVPKGFAHGFVTLTP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS--PF 179
N +YK ++Y+ D G+A+ D ++ I WP+ SEKDQ P L + ++ PF
Sbjct: 127 NVNFMYKCDNYYNAAADGGIAFNDPTLAIDWPIAPE-KAITSEKDQKHPTLKEFEAENPF 185
Query: 180 EY 181
Y
Sbjct: 186 IY 187
>gi|82543416|ref|YP_407363.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella boydii Sb227]
gi|16611726|gb|AAL27313.1|AF402312_5 dTDP-6-deoxy-D-glucose-3,5 epimerase [Shigella boydii]
gi|81244827|gb|ABB65535.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella boydii Sb227]
gi|167410112|gb|ABZ79716.1| RmlC [Escherichia coli]
gi|332097110|gb|EGJ02093.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella boydii 3594-74]
Length = 189
Score = 274 bits (701), Expect = 6e-72, Method: Composition-based stats.
Identities = 80/183 (43%), Positives = 116/183 (63%), Gaps = 3/183 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EISDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKSSK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC G +FD+AVDIR++SPT+G WV + +SA N Q++IP G AHGF+ L
Sbjct: 66 EPYAQGKLVRCAVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGLAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
E +YK T++Y E D G+ W D ID+ WPL P +S KD+ ++ + +
Sbjct: 126 ETAEFLYKTTNYYHPESDRGIIWDDPDIDVKWPLS-IHKPILSIKDEKQKMFKEMIALEK 184
Query: 181 YDG 183
++G
Sbjct: 185 WNG 187
>gi|300853758|ref|YP_003778742.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium ljungdahlii DSM
13528]
gi|300433873|gb|ADK13640.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium ljungdahlii DSM
13528]
Length = 191
Score = 274 bits (701), Expect = 6e-72, Method: Composition-based stats.
Identities = 79/177 (44%), Positives = 107/177 (60%), Gaps = 2/177 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++T F D+RG+F +TY+ K +GL VFVQDN S S G +RGLHFQ+
Sbjct: 13 EIEGVYIIETGIFGDNRGYFMETYNYSDFKAVGLDMVFVQDNQSKS-KKGVLRGLHFQK- 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+Q KLVR + G++FD+AVD+R S TYG W+ + +S N Q YIP GFAHGF+ +
Sbjct: 71 NYSQGKLVRVVKGKVFDVAVDLRDGSSTYGKWIGVTLSEENRKQFYIPKGFAHGFLVISD 130
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
E YK T+FY E + G+ W D I+I WPL SE+D+ P L + +
Sbjct: 131 EAEFCYKCTEFYHPEDEGGIIWNDPDINIKWPLEGIDNIIFSERDKLWPTLKECKNN 187
>gi|289434339|ref|YP_003464211.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289170583|emb|CBH27123.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria seeligeri serovar
1/2b str. SLCC3954]
Length = 186
Score = 274 bits (701), Expect = 6e-72, Method: Composition-based stats.
Identities = 74/181 (40%), Positives = 112/181 (61%), Gaps = 3/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+++K + F D RG+F ++Y+ K + G+ F+QDNHS S + G +RG+H+Q
Sbjct: 7 KLAGVKLVKPKVFGDHRGFFMESYNEKAFHDAGIDMKFIQDNHSLSVEAGVLRGMHYQTN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL+R G I+D+ VD+R+ SPTYG W +S N Q+ +P GFAHGF T+
Sbjct: 67 PKAQTKLIRVGTGAIYDVVVDMRKGSPTYGEWEGFILSEANKHQLLVPQGFAHGFCTITE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N V+YKV YS E+D+G+A+ D ++ITWP T +S+KD P L ++ F +
Sbjct: 127 NVNVLYKVDQLYSPENDAGIAYDDPDLNITWP---TDKLILSDKDTKHPRLKDAENNFVW 183
Query: 182 D 182
+
Sbjct: 184 E 184
>gi|187880505|gb|ACD37023.1| RmlC [Shigella boydii]
Length = 179
Score = 274 bits (701), Expect = 6e-72, Method: Composition-based stats.
Identities = 79/173 (45%), Positives = 111/173 (64%), Gaps = 4/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKSCK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
E +YK T +Y E + G+ W D++I + WPL + +S KD P N
Sbjct: 126 ETAEFVYKTTQYYHPECERGIRWDDENIGVDWPLSTDL--ILSFKDTKHPKFN 176
>gi|256762995|ref|ZP_05503575.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis T3]
gi|256684246|gb|EEU23941.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis T3]
Length = 190
Score = 274 bits (701), Expect = 6e-72, Method: Composition-based stats.
Identities = 77/182 (42%), Positives = 110/182 (60%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ F D RG+F+++YS E GL FVQDNHS S + G +RGLHFQ+
Sbjct: 7 KLQDVKIIEMDVFGDHRGFFTESYSKTKFAEHGLDFDFVQDNHSLSTEAGVLRGLHFQKG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ VDIR+ SPTYG W +S +N Q+ +P GFAHGF+TL
Sbjct: 67 EAAQTKLIRVVTGAVLDVIVDIRKGSPTYGQWEGYILSEHNHRQLLVPKGFAHGFVTLTP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS--PF 179
N +YK ++Y+ D G+A+ D ++ I WP+ SEKDQ P L + ++ PF
Sbjct: 127 NVNFMYKCDNYYNAAADGGIAFNDPALAIDWPIAPE-KAITSEKDQKHPTLKEFEAENPF 185
Query: 180 EY 181
Y
Sbjct: 186 IY 187
>gi|315231845|ref|YP_004072281.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermococcus barophilus MP]
gi|315184873|gb|ADT85058.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermococcus barophilus MP]
Length = 185
Score = 274 bits (701), Expect = 6e-72, Method: Composition-based stats.
Identities = 82/175 (46%), Positives = 119/175 (68%), Gaps = 4/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V ++K + FED RG+F +TY ++ G++ FVQDNHS S G +RGLHFQ+
Sbjct: 8 LEIPDVILIKPKVFEDERGFFMETYKKPDFEKAGIKGEFVQDNHSKS-KYGVLRGLHFQK 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQAK+VRCI G I+D+AVD+R+NSPT+G +V + +S N +YIP GFAHGF+ L
Sbjct: 67 EPYAQAKIVRCIRGVIYDVAVDLRKNSPTFGKYVGVILSEYNKYMLYIPRGFAHGFVVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
EV+YKV + Y+ +++ G+ W D ++I WP+ + P VSEKD+ P L ++
Sbjct: 127 DVAEVVYKVDNVYAPDYEGGLIWNDPDVNIQWPVEN---PVVSEKDKRWPTLKEL 178
>gi|153214711|ref|ZP_01949556.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae 1587]
gi|29725987|gb|AAO88920.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]
gi|124115147|gb|EAY33967.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae 1587]
Length = 181
Score = 274 bits (701), Expect = 6e-72, Method: Composition-based stats.
Identities = 76/176 (43%), Positives = 105/176 (59%), Gaps = 4/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELG--LQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T+ + +EL FVQDNHS S T+RGLH+Q
Sbjct: 7 DIPDVKIIEPTVFGDERGFFMETWQQRKFEELVTCKPTQFVQDNHSKSKKA-TLRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
AQ KLVR I+G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF
Sbjct: 66 TKN-AQGKLVRVISGEVFDVAVDIRKDSPTFGKWVGVYLSAENKRQLWIPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ + + W D I + WPL +SEKD P L+
Sbjct: 125 SDEAEFVYKCTDYYNPNAEGTIVWSDPDIGVEWPLDQYTDLIISEKDSAAPLLSDA 180
>gi|264678894|ref|YP_003278801.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Comamonas testosteroni CNB-2]
gi|262209407|gb|ACY33505.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Comamonas testosteroni CNB-2]
Length = 185
Score = 273 bits (700), Expect = 7e-72, Method: Composition-based stats.
Identities = 83/177 (46%), Positives = 116/177 (65%), Gaps = 3/177 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ + F D+RG+F +++ L + G F+QDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVFLIEPKVFGDARGFFLESFRQDLFNQATGTNYEFIQDNHSRSSK-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
PP+AQ KLVR I+G +FD+AVDIRR+SPT+G WV E+SA N Q++IP GFAHGF+ L
Sbjct: 65 LPPHAQGKLVRVISGAVFDVAVDIRRSSPTFGQWVGAELSAENHRQLWIPPGFAHGFVVL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK T +Y+ E D G+ W D I I WP LD I S+SEKD++ P Q +
Sbjct: 125 SDTADFVYKTTAYYAPESDRGLLWNDPDITIAWPQLD-IEFSLSEKDRHQPAFKQAE 180
>gi|168481341|gb|ACA24827.1| RmlC [Escherichia coli]
gi|320198728|gb|EFW73328.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli EC4100B]
Length = 177
Score = 273 bits (700), Expect = 7e-72, Method: Composition-based stats.
Identities = 81/173 (46%), Positives = 115/173 (66%), Gaps = 4/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKSCK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
E +YK T++Y E D G+ W D I+I WP + I +S+KD++ P L+
Sbjct: 126 ETAEFLYKTTNYYHPESDRGIIWDDSFINIQWPYDECI--ILSDKDKHQPGLS 176
>gi|291559812|emb|CBL38612.1| dTDP-4-dehydrorhamnose 3,5-epimerase [butyrate-producing bacterium
SSC/2]
Length = 184
Score = 273 bits (700), Expect = 7e-72, Method: Composition-based stats.
Identities = 79/173 (45%), Positives = 107/173 (61%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + +++ F+D RG+F +TY+ +KE GL VFVQDN S S G +RGLHFQ+
Sbjct: 10 DIEGLYVIEPTVFKDERGYFVETYNQNDMKEAGLDMVFVQDNQSMS-TRGVLRGLHFQKQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G++FD+AVD+R +S TYG W +E+SA N Q YIP GFAHGF+ L
Sbjct: 69 -FPQGKLVRVVRGKVFDVAVDLRSDSKTYGKWFGVELSAENMKQFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E YK TDFY + G+ W D I + WPL + + +SEKDQ L
Sbjct: 128 EAEFCYKCTDFYHPGDEGGLTWNDPEIGVEWPLEEGVDLIISEKDQKWKGLKD 180
>gi|256963468|ref|ZP_05567639.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis
HIP11704]
gi|307272375|ref|ZP_07553631.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0855]
gi|256953964|gb|EEU70596.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis
HIP11704]
gi|306510929|gb|EFM79943.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX0855]
Length = 190
Score = 273 bits (700), Expect = 7e-72, Method: Composition-based stats.
Identities = 78/182 (42%), Positives = 110/182 (60%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ F D RG+F+++YS E GL FVQDNHS S + G +RGLHFQ+
Sbjct: 7 KLQDVKIIEMDVFGDHRGFFTESYSKAKFAEHGLDFDFVQDNHSLSTEAGVLRGLHFQKG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ VDIRR SPTYG W +S +N Q+ +P GFAHGF+TL
Sbjct: 67 EAAQTKLIRVVTGAVLDVIVDIRRGSPTYGQWEGYILSEHNHRQLLVPKGFAHGFVTLTP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS--PF 179
N +YK ++Y+ D G+A+ D ++ I WP+ SEKDQ P L + ++ PF
Sbjct: 127 NVNFMYKCDNYYNAAADGGIAFNDPALAIDWPIAPE-KAITSEKDQKHPTLKEFEAENPF 185
Query: 180 EY 181
Y
Sbjct: 186 IY 187
>gi|288963203|ref|YP_003453482.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Azospirillum sp. B510]
gi|288915455|dbj|BAI76938.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Azospirillum sp. B510]
Length = 183
Score = 273 bits (700), Expect = 8e-72, Method: Composition-based stats.
Identities = 91/179 (50%), Positives = 121/179 (67%), Gaps = 1/179 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V+I++ +KF D RG+FS+TY+ K + GL+ FVQDN S S + GT+RGLHFQ
Sbjct: 6 LDIPDVKIIRPKKFGDHRGFFSETYNKKTFEAAGLRYDFVQDNQSLSAEVGTVRGLHFQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KL+R + G I D+AVDIR++SPT+G VS ISA QI +P GFAHGF TLE
Sbjct: 66 PPFAQDKLLRVVRGAILDVAVDIRKDSPTFGRHVSAVISAAEWNQILVPIGFAHGFCTLE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+TEVIYKVT++YS EHD G+ W D + I WP+ +S KD+ P Q+ F
Sbjct: 126 PDTEVIYKVTNYYSPEHDRGLLWNDPELGIDWPVS-ADKAQLSGKDRTHPTFAQLGDWF 183
>gi|313633864|gb|EFS00584.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Listeria seeligeri FSL
N1-067]
Length = 186
Score = 273 bits (700), Expect = 8e-72, Method: Composition-based stats.
Identities = 74/181 (40%), Positives = 112/181 (61%), Gaps = 3/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+++K + F D RG+F ++Y+ K + G+ F+QDNHS S + G +RG+H+Q
Sbjct: 7 KLAGVKLVKPKVFGDHRGFFMESYNEKAFHDAGIDMKFIQDNHSLSVEAGVLRGMHYQTN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL+R G I+D+ VD+R+ SPTYG W +S N Q+ +P GFAHGF T+
Sbjct: 67 PRAQTKLIRVGTGAIYDVVVDMRKGSPTYGEWEGFILSEANKHQLLVPQGFAHGFCTITE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N V+YKV YS E+D+G+A+ D ++ITWP T +S+KD P L ++ F +
Sbjct: 127 NVNVLYKVDQLYSPENDAGIAYDDPDLNITWP---TDKLILSDKDTKHPRLKDAENNFVW 183
Query: 182 D 182
+
Sbjct: 184 E 184
>gi|83950202|ref|ZP_00958935.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseovarius nubinhibens ISM]
gi|83838101|gb|EAP77397.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseovarius nubinhibens ISM]
Length = 180
Score = 273 bits (699), Expect = 9e-72, Method: Composition-based stats.
Identities = 89/180 (49%), Positives = 127/180 (70%), Gaps = 1/180 (0%)
Query: 4 NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPY 63
V IL R+F D+RG+FS++++ ++++E G++ FVQDNHS S D GT+RGLHFQ PP+
Sbjct: 2 PGVLILTPRRFADARGFFSESWNQRVMEEAGIEIAFVQDNHSLSRDVGTVRGLHFQSPPH 61
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
AQAKLVRC G ++D+AVD+RR SP+YG WV +E+SA+NG Q+ IP GF HGF+T E +T
Sbjct: 62 AQAKLVRCGRGALYDVAVDVRRGSPSYGKWVGVELSADNGRQLLIPAGFLHGFVTREPDT 121
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
EVIYK +DFY+ E D V + D + I W + + +S+KD+ D+PF ++G
Sbjct: 122 EVIYKCSDFYAPECDGAVRFDDPDLGIDWGI-EASAAVLSDKDRAAQSFAAFDTPFVWEG 180
>gi|29655125|ref|NP_820817.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii RSA 493]
gi|161830572|ref|YP_001597662.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii RSA 331]
gi|29542394|gb|AAO91331.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii RSA 493]
gi|161762439|gb|ABX78081.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii RSA 331]
Length = 189
Score = 273 bits (699), Expect = 9e-72, Method: Composition-based stats.
Identities = 80/183 (43%), Positives = 115/183 (62%), Gaps = 2/183 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M I V ++K + F D RG+F +T+ + G+ F+QDNHS S G +RGLH+Q
Sbjct: 8 MLIPEVILIKPKVFTDDRGFFIETFKQSDFRRHGINGEFLQDNHSLSMKKGVLRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVR + G++FD+AVD+RR SPT+G WVS E+S+ N ++IP GFAHG + LE
Sbjct: 68 DPHAQGKLVRVVLGKVFDVAVDLRRESPTFGKWVSTELSSTNNHMLWIPPGFAHGMLVLE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NT ++YK T Y E + + W D I+I WP+ + +L +SEKD FL + + +
Sbjct: 128 ENTHLLYKCTAEYVPESERYIRWDDPDINIKWPIKNNLL--LSEKDAAGVFLQRAEINAQ 185
Query: 181 YDG 183
Y G
Sbjct: 186 YHG 188
>gi|157161533|ref|YP_001458851.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli HS]
gi|300946366|ref|ZP_07160644.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 116-1]
gi|301643905|ref|ZP_07243934.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 146-1]
gi|157067213|gb|ABV06468.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli HS]
gi|300453958|gb|EFK17578.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 116-1]
gi|301077725|gb|EFK92531.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 146-1]
Length = 184
Score = 273 bits (699), Expect = 9e-72, Method: Composition-based stats.
Identities = 83/176 (47%), Positives = 112/176 (63%), Gaps = 2/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I + R F D+RG+F +++SSK+ E G Q FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPEVLIFEPRVFGDARGFFFESFSSKVFNEAVGRQVDFVQDNHSQS-QKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC+ G +FD+AVDIRR+SPT+G WV +SA N Q++IP GFAHGFM L
Sbjct: 66 APHAQGKLVRCVEGEVFDVAVDIRRSSPTFGKWVGAVLSAENKRQLWIPEGFAHGFMALS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK T++Y+ + + + W D I I WP L S+SEKD L +
Sbjct: 126 DTVQFVYKATNYYAPQSERSIIWNDPEIGIDWPALSDCALSLSEKDLQAHTLATAE 181
>gi|297526883|ref|YP_003668907.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Staphylothermus hellenicus
DSM 12710]
gi|297255799|gb|ADI32008.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Staphylothermus hellenicus
DSM 12710]
Length = 185
Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats.
Identities = 83/175 (47%), Positives = 117/175 (66%), Gaps = 4/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M+I V ++ + FED RG+F +TY + G++ FVQDNHS S G +RGLHFQR
Sbjct: 8 MDIPDVVLIIPKVFEDERGFFMETYKKPDFERAGIRGNFVQDNHSRS-RYGVLRGLHFQR 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQAK+VRC+ G I+D+AVD+RRNS T+G +V + +S N +YIP GFAHGF+ L
Sbjct: 67 EPYAQAKIVRCVRGVIYDVAVDLRRNSKTFGKYVGVILSEFNKYMLYIPRGFAHGFLVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
EVIYKV + Y+ E+++G+ W D + I WP+ + P +SEKD+ P L ++
Sbjct: 127 EEAEVIYKVDNLYAPEYEAGLIWNDPDVGIKWPIEE---PILSEKDKKWPTLREL 178
>gi|154707208|ref|YP_001423502.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii Dugway
5J108-111]
gi|154356494|gb|ABS77956.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii Dugway
5J108-111]
Length = 189
Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats.
Identities = 80/183 (43%), Positives = 115/183 (62%), Gaps = 2/183 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M I V ++K + F D RG+F +T+ + G+ F+QDNHS S G +RGLH+Q
Sbjct: 8 MPIPEVILIKPKVFTDDRGFFIETFKQSDFRRHGINGEFLQDNHSLSMKKGVLRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVR + G++FD+AVD+RR SPT+G WVS E+S+ N ++IP GFAHG + LE
Sbjct: 68 DPHAQGKLVRVVLGKVFDVAVDLRRESPTFGKWVSTELSSTNNHMLWIPPGFAHGMLVLE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NT ++YK T Y E + + W D I+I WP+ + +L +SEKD FL + + +
Sbjct: 128 ENTHLLYKCTAEYVPESERYIRWDDPDINIKWPIKNNLL--LSEKDAAGVFLQRAEINAQ 185
Query: 181 YDG 183
Y G
Sbjct: 186 YHG 188
>gi|121592970|ref|YP_984866.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidovorax sp. JS42]
gi|120605050|gb|ABM40790.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidovorax sp. JS42]
Length = 182
Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats.
Identities = 73/179 (40%), Positives = 114/179 (63%), Gaps = 4/179 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ + F D+RG+F ++++ + E+ G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVVLIEPKVFGDARGFFFESFNQRAFNEVTGTNHHFVQDNHSRS-TKGVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR + G +FD+AVDIR++S T+G WV +E+SA N Q+++P GFAHGF+ L
Sbjct: 65 IQQP-QGKLVRVVQGAVFDVAVDIRKSSATFGQWVGVELSAENHRQLWVPPGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
+ +YK TD+Y+ +++ +AW D ++ I WP L + P++S KD L Q + P
Sbjct: 124 SDTADFLYKTTDYYAPQYERCIAWNDPTLAIAWPDL-GMRPTLSAKDGAGKLLQQAELP 181
>gi|315166501|gb|EFU10518.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX1341]
Length = 190
Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats.
Identities = 76/182 (41%), Positives = 110/182 (60%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ F D RG+F+++YS E GL FVQDNHS S + G +RGLHFQ+
Sbjct: 7 KLQDVKIIEMDVFGDHRGFFTESYSKAKFAEHGLDFDFVQDNHSLSTEAGVLRGLHFQKG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ +DIR+ SPTYG W +S +N Q+ +P GFAHGF+TL
Sbjct: 67 EAAQTKLIRVVTGAVLDVIIDIRKGSPTYGQWEGYILSEHNHRQLLVPKGFAHGFVTLTP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS--PF 179
N +YK ++Y+ D G+A+ D ++ I WP+ SEKDQ P L + ++ PF
Sbjct: 127 NVNFMYKCDNYYNAAADGGIAFNDPALAIDWPIAPE-KAITSEKDQKHPTLKEFEAENPF 185
Query: 180 EY 181
Y
Sbjct: 186 IY 187
>gi|260162548|dbj|BAI43790.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Klebsiella pneumoniae]
Length = 184
Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats.
Identities = 83/176 (47%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + R F D+RG+F +++SSK+ E G Q FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPRVFGDARGFFFESFSSKVFNEAVGRQVDFVQDNHSQS-QKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC+ G +FD+AVDIRR+SPT+G WV +SA N Q++IP GFAHGFM L
Sbjct: 66 DPHAQGKLVRCVEGEVFDVAVDIRRSSPTFGKWVGAVLSAENKRQLWIPEGFAHGFMALS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK T++Y+ + + + W D I I WP L S+SEKD L +
Sbjct: 126 DTVQFVYKATNYYAPQSERSIIWNDPEIGIDWPALGDCALSLSEKDLQAHTLATAE 181
>gi|37678487|ref|NP_933096.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Vibrio vulnificus
YJ016]
gi|37197227|dbj|BAC93067.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Vibrio vulnificus
YJ016]
Length = 185
Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 4/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I ++I++ F D RG+F +T+ +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 SIPEIKIIEPMVFGDERGFFMETWHQARFEELVTGKPTRFVQDNHSKS-KQGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ Q KLVR ++G +FD+AVDIR+ SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 MQ-HTQGKLVRVVSGEVFDVAVDIRQGSPTFGQWVGVYLSAENKRQMWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK TD+Y + + +AW D I I WP+ P +S+KD + P L++
Sbjct: 125 SEEAEFVYKCTDYYHPQSEQCIAWNDTVIGIDWPIPIGKGPMLSKKDASAPNLSE 179
>gi|222148466|ref|YP_002549423.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Agrobacterium vitis S4]
gi|221735454|gb|ACM36417.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Agrobacterium vitis S4]
Length = 187
Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats.
Identities = 83/181 (45%), Positives = 122/181 (67%), Gaps = 1/181 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V ++ ++F D+RG+F +T+ + L + FVQDN SFS + GT+RGLHFQ
Sbjct: 7 KLSGVFLITPKRFGDARGYFMETFRASLFESEVGPFTFVQDNKSFSAEVGTVRGLHFQLN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLV C AG + D+AVDIR+ SPTYG V E++A NG Q+++P GFAHGF TL+
Sbjct: 67 PRAQGKLVSCAAGALLDVAVDIRQGSPTYGQMVKAELTAENGCQLWVPPGFAHGFCTLQP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
NT + YKVTD+YS +HD G+ W D ++ I WP+ + +S+KD+ P L+++++ F Y
Sbjct: 127 NTVISYKVTDYYSPDHDRGLLWNDPALAIDWPVTEDN-AILSDKDKKQPKLSELETNFVY 185
Query: 182 D 182
Sbjct: 186 Q 186
>gi|306842189|ref|ZP_07474858.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella sp. BO2]
gi|306287776|gb|EFM59207.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella sp. BO2]
Length = 183
Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats.
Identities = 91/176 (51%), Positives = 122/176 (69%), Gaps = 1/176 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ ++ V + RKF D RG+FS+TY++K E G+ FVQDNHS+S G +RGLH+Q
Sbjct: 6 LGLDGVFEISPRKFGDDRGFFSETYNAKSFAEAGIDLTFVQDNHSYSAAKGVVRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVR G I D+AVDIR++SPT+G WV+LE+SA+ QI +P GFAHGFMTL
Sbjct: 66 PPFAQDKLVRVTRGAILDVAVDIRKSSPTFGKWVALEVSADKWNQILVPKGFAHGFMTLV 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
NTEVIYKVTD+YS EHD + + D +I I WP+ + + +S+KDQ P +
Sbjct: 126 ENTEVIYKVTDYYSPEHDRSIRFDDPAIGIDWPVASSGV-QLSDKDQKAPLFADAE 180
>gi|182680403|ref|YP_001834549.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182636286|gb|ACB97060.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 191
Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats.
Identities = 89/182 (48%), Positives = 120/182 (65%), Gaps = 1/182 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +++ +KF D+RG+F++TY+++ E G+ VFVQDN S S + GTIRGLHFQ
Sbjct: 8 LAIPDVLLIRPKKFGDARGYFAETYNARAYCEAGIDCVFVQDNQSLSVEKGTIRGLHFQV 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP QAKLVR + G I D+AVD+RR SP YG W ++A G Q+++P GFAHGF TL
Sbjct: 68 PPEPQAKLVRVLRGAILDVAVDLRRGSPHYGQWCGATLTAEEGEQLFVPRGFAHGFCTLM 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
TEV YKV FY+ D+G+ + D I+I WPL D +S+KD LPFL SPF
Sbjct: 128 PETEVAYKVDGFYAPGCDAGLRYDDPDINIPWPL-DGKAAMISDKDGKLPFLRDFKSPFT 186
Query: 181 YD 182
++
Sbjct: 187 FE 188
>gi|262383284|ref|ZP_06076420.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_33B]
gi|262294182|gb|EEY82114.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_33B]
Length = 185
Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats.
Identities = 71/179 (39%), Positives = 108/179 (60%), Gaps = 1/179 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ + +D+RG+F + + +E + FVQDN S S G +RGLH+Q P
Sbjct: 8 IPGVWIIEPKVLKDARGYFMEAFKQAEFEEHIGKIEFVQDNESCSSK-GVLRGLHYQLAP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+Q+KLVR I GR+ D+AVD+R SPT+G +V++E+S N Q++IP GFAHGF L
Sbjct: 67 YSQSKLVRVIKGRVLDVAVDVREGSPTFGKYVAVELSDENKRQLFIPQGFAHGFHVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YKV + Y+ H+ G+ + D ++ + W + D ++SEKD P L + F+Y
Sbjct: 127 AIFTYKVDNPYAPTHERGIRYDDPTVHVDWGITDPESINLSEKDTKAPSLKDAELNFKY 185
>gi|115503048|gb|ABI98972.1| RmlC [Escherichia coli]
Length = 177
Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats.
Identities = 80/172 (46%), Positives = 112/172 (65%), Gaps = 4/172 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ + +G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFFESFNQKVFEVAVGRKVEFVQDNHSKS-RKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
E +YK T++Y E D G+ W DK I++ WP +S KD+ LP L
Sbjct: 126 ETAEFLYKTTNYYHPESDRGIIWDDKFINVEWP--PYENYILSAKDKTLPPL 175
>gi|320530257|ref|ZP_08031327.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas artemidis F0399]
gi|320137690|gb|EFW29602.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas artemidis F0399]
Length = 184
Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats.
Identities = 86/181 (47%), Positives = 119/181 (65%), Gaps = 4/181 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ VRIL+ + F D+RGWF +++S K +++ G+ FVQDNHSFS + GT+RGLH+Q
Sbjct: 7 KLPGVRILEPQVFGDARGWFMESWSQKKMEDAGIHVDFVQDNHSFSVERGTLRGLHYQLN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKL+R G +FD+AVDIRR SPTY W+ +E+SA N Q++IP GFAHGF+TL
Sbjct: 67 PMAQAKLLRVSRGAVFDVAVDIRRGSPTYAQWIGIELSAENYRQLFIPRGFAHGFITLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ-IDSPFE 180
N EV YK + Y+ + D + W D +I + WP + +SEKD P L + I+ F
Sbjct: 127 NVEVQYKADNLYAPDCDGNIRWDDPAIGVAWPFTPVV---LSEKDAIAPSLAERIELNFV 183
Query: 181 Y 181
Y
Sbjct: 184 Y 184
>gi|167461465|ref|ZP_02326554.1| dTDP-dehydrorhamnose 3,5-epimerase [Paenibacillus larvae subsp.
larvae BRL-230010]
gi|322381926|ref|ZP_08055879.1| heat-inducible transcription repressor-like protein [Paenibacillus
larvae subsp. larvae B-3650]
gi|321154127|gb|EFX46450.1| heat-inducible transcription repressor-like protein [Paenibacillus
larvae subsp. larvae B-3650]
Length = 185
Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats.
Identities = 83/174 (47%), Positives = 119/174 (68%), Gaps = 3/174 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V +L+ + DSRG+F ++++ K+ E GL +VQDNHS+S + GT+RGLH+Q P
Sbjct: 8 LESVILLEPKVHGDSRGFFMESFNQKVFTENGLPVAYVQDNHSYSAEAGTLRGLHYQLSP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLVR AG I+D+AVDIRR+SP++G W + +SA+N + +P G+AHGF TL +
Sbjct: 68 KAQTKLVRVTAGAIYDVAVDIRRDSPSFGHWTGIILSASNKRMLLVPQGYAHGFCTLVPH 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
TEV+YKV + Y+ E D G+AW D S+ I WP+ D P +SEKD+ LP L +
Sbjct: 128 TEVLYKVDELYNPELDRGIAWNDPSLGIDWPVAD---PVLSEKDRTLPLLEDAE 178
>gi|260162574|dbj|BAI43815.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Klebsiella pneumoniae]
Length = 184
Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats.
Identities = 83/176 (47%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + R F D+RG+F +++SSK+ E G Q FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPEVLIFEPRVFGDARGFFFESFSSKVFNEAVGRQVEFVQDNHSQS-QKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC+ G +FD+AVDIRR+SPT+G WV +SA N Q++IP GFAHGFM L
Sbjct: 66 DPHAQGKLVRCVEGEVFDVAVDIRRSSPTFGKWVGAVLSAENKRQLWIPEGFAHGFMALS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK T++Y+ + + + W D I I WP L S+SEKD L +
Sbjct: 126 DTVQFVYKATNYYAPQSERSIIWNDPEIGIDWPALSDCALSLSEKDLQAHTLATAE 181
>gi|298376300|ref|ZP_06986256.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_1_19]
gi|298267337|gb|EFI08994.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_1_19]
Length = 185
Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats.
Identities = 72/179 (40%), Positives = 108/179 (60%), Gaps = 1/179 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ + +D+RG+F + + +E + FVQDN S S G +RGLH+Q P
Sbjct: 8 IPGVWIIEPKVLKDARGYFMEAFKQAEFEEHIGKIEFVQDNESCSSK-GVLRGLHYQLAP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+Q+KLVR I GR+ D+AVDIR SPT+G +V++E+S N Q++IP GFAHGF L
Sbjct: 67 YSQSKLVRVIKGRVLDVAVDIREGSPTFGKYVAVELSDENKRQLFIPQGFAHGFHVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YKV + Y+ H+ G+ + D ++ + W + D ++SEKD P L + F+Y
Sbjct: 127 AIFTYKVDNPYTPTHERGIRYDDPTVHVDWSITDPESINLSEKDTKAPSLKDAELNFKY 185
>gi|152971027|ref|YP_001336136.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|150955876|gb|ABR77906.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 184
Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats.
Identities = 83/176 (47%), Positives = 112/176 (63%), Gaps = 2/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I + R F D+RG+F +++SSK+ E G Q FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPEVLIFEPRVFGDARGFFFESFSSKVFNEAVGRQVEFVQDNHSQS-QKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC+ G +FD+AVDIRR+SPT+G WV +SA N Q++IP GFAHGFM L
Sbjct: 66 DPHAQGKLVRCVEGEVFDVAVDIRRSSPTFGKWVGAVLSAENKRQLWIPEGFAHGFMALS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK T++Y+ + + + W D I I WP L S+SEKD L +
Sbjct: 126 DTVQFVYKATNYYAPQSERSIIWNDPEIGIDWPALGDCALSLSEKDLQAHTLATAE 181
>gi|256961442|ref|ZP_05565613.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis Merz96]
gi|293382820|ref|ZP_06628741.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis R712]
gi|293387971|ref|ZP_06632504.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis S613]
gi|312905903|ref|ZP_07764917.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis DAPTO
512]
gi|312908949|ref|ZP_07767812.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis DAPTO
516]
gi|256951938|gb|EEU68570.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis Merz96]
gi|291079811|gb|EFE17175.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis R712]
gi|291082627|gb|EFE19590.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis S613]
gi|310628070|gb|EFQ11353.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis DAPTO
512]
gi|311290733|gb|EFQ69289.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis DAPTO
516]
Length = 190
Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats.
Identities = 77/182 (42%), Positives = 110/182 (60%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ F D RG+F+++YS E GL FVQDNHS S + G +RGLHFQ+
Sbjct: 7 KLQDVKIIEMDVFGDHRGFFTESYSKAKFAEHGLDFDFVQDNHSLSTEAGVLRGLHFQKG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ VDIR+ SPTYG W +S +N Q+ +P GFAHGF+TL
Sbjct: 67 EAAQTKLIRVVTGAVLDVIVDIRKGSPTYGQWEGYILSEHNHHQLLVPKGFAHGFVTLTP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS--PF 179
N +YK ++Y+ D G+A+ D ++ I WP+ SEKDQ P L + ++ PF
Sbjct: 127 NVNFMYKCDNYYNAAADGGIAFNDPALAIDWPIAPE-KAITSEKDQKHPTLKEFEAENPF 185
Query: 180 EY 181
Y
Sbjct: 186 IY 187
>gi|304405208|ref|ZP_07386868.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus curdlanolyticus
YK9]
gi|304346087|gb|EFM11921.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus curdlanolyticus
YK9]
Length = 181
Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats.
Identities = 82/178 (46%), Positives = 116/178 (65%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V +++T F D RG+F+++Y+ + G+ FVQDNHS S + GT+RGLHFQ
Sbjct: 7 KLDGVLVIETNVFGDHRGFFTESYNEEKFLAAGIDYKFVQDNHSLSSEAGTVRGLHFQLA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVR +AG I+D+AVD+R++S TYG WV + +S +N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLVRVVAGAIYDVAVDLRKDSSTYGQWVGVILSESNKRQLLVPQGFAHGFCTLTP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
NT+V+YKV +YS EHD G+ W D I I WP T +S+KD+ P + + F
Sbjct: 127 NTQVLYKVDAYYSQEHDRGLLWNDPDIGIEWP---TDRVILSDKDKVHPGIREAGIYF 181
>gi|218259907|ref|ZP_03475432.1| hypothetical protein PRABACTJOHN_01093 [Parabacteroides johnsonii
DSM 18315]
gi|218224852|gb|EEC97502.1| hypothetical protein PRABACTJOHN_01093 [Parabacteroides johnsonii
DSM 18315]
Length = 185
Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats.
Identities = 71/180 (39%), Positives = 111/180 (61%), Gaps = 1/180 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ + F+D+RG+F + + +E + FVQDN S S G +RGLH+Q
Sbjct: 7 EIPGVWIIEPKVFKDARGYFMEAWKKAEFEEHIGKVEFVQDNESCSSK-GVLRGLHYQLA 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY+Q+KLVR I G + D+AVD+R+ SPT+G +V++E+S N Q +IP GFAHGF L
Sbjct: 66 PYSQSKLVRVIKGCVLDVAVDLRKGSPTFGKYVAVELSDENKRQFFIPQGFAHGFHVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YKV + Y+ H+ G+ + D + + W ++D + ++S+KD+N P L + F+Y
Sbjct: 126 EAVFTYKVDNPYTPTHERGLRFDDPVVGVDWKIMDLSILNLSDKDRNAPLLQDAEINFKY 185
>gi|292669522|ref|ZP_06602948.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas noxia ATCC 43541]
gi|292648731|gb|EFF66703.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas noxia ATCC 43541]
Length = 186
Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats.
Identities = 87/180 (48%), Positives = 116/180 (64%), Gaps = 4/180 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V IL+ + F D+RGWF +++S K ++ G+ FVQDNHSFS GT+RGLH+Q P
Sbjct: 8 LEGVFILEPQVFGDARGWFMESWSQKKMENAGINVNFVQDNHSFSAQRGTLRGLHYQLNP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQAKL+R G IFD+AVDIRR SPTY WV +E+SA N Q++IP GFAHGF+TL N
Sbjct: 68 MAQAKLLRVSRGAIFDVAVDIRRGSPTYAKWVGIELSAENYRQLFIPRGFAHGFITLTDN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI-DSPFEY 181
EV YK +FY+ D + W D I I WP+ + +S+KD P L++ + F Y
Sbjct: 128 VEVQYKADNFYAPGCDGNIRWNDPVISIVWPMNPRV---LSDKDAAAPTLSERNELNFTY 184
>gi|9957867|gb|AAG09540.1|AF279625_4 dTDP-6-deoxy-D-glucose-3,5-epimerase [Salmonella enterica]
Length = 179
Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats.
Identities = 80/172 (46%), Positives = 114/172 (66%), Gaps = 4/172 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFSDERGFFMESFNQKVFEEAVGRKIEFVQDNHSKS-TKGVLRGLHYQV 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC AG +FD+AVDIR++S T+G WV + IS+ N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCTAGEVFDVAVDIRKDSETFGKWVGVNISSENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ + +YK +++YS H+ G+ W D +I+I WP+ I +SEKD LP
Sbjct: 126 DSADFLYKTSNYYSPVHERGIVWNDPTININWPI--NIDKILSEKDTILPKF 175
>gi|269102102|ref|ZP_06154799.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268162000|gb|EEZ40496.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 181
Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats.
Identities = 78/176 (44%), Positives = 109/176 (61%), Gaps = 6/176 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPTVFGDERGFFMETWNQKKFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR+NSPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 TEN-TQGKLVRVVSGEVFDVAVDIRKNSPTFGKWVGVYLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TDFY+ + + + W D I I WPL + P +S+KD L +I
Sbjct: 125 SDEAEFVYKCTDFYNPKAEHSILWNDLDIGIEWPLDNA--PVLSDKDSKGTLLTKI 178
>gi|56965452|ref|YP_177184.1| dTDP-dehydrorhamnose 3,5-epimerase [Bacillus clausii KSM-K16]
gi|56911696|dbj|BAD66223.1| dTDP-dehydrorhamnose 3,5-epimerase [Bacillus clausii KSM-K16]
Length = 181
Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats.
Identities = 81/178 (45%), Positives = 110/178 (61%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+L+ F D RG+F ++Y+ KE+G++ F+QDNHS S GT+RGLH+Q
Sbjct: 7 KFADAFLLEPTVFGDHRGFFMESYNKDTFKEIGIEIDFIQDNHSLSQTPGTLRGLHYQLA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL+R G I+D+ VDIR+ S TYG W ++A N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIRATKGAIYDVIVDIRKESSTYGQWQGFILTAENKRQLLVPKGFAHGFCTLVE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
NTEV YKV + YS EHD G+AW D + I WP+ + P +S+KD P L Q ++ F
Sbjct: 127 NTEVQYKVDELYSPEHDRGIAWDDPVLSIDWPVSN---PILSDKDVKHPNLEQAENNF 181
>gi|189461252|ref|ZP_03010037.1| hypothetical protein BACCOP_01902 [Bacteroides coprocola DSM 17136]
gi|189432069|gb|EDV01054.1| hypothetical protein BACCOP_01902 [Bacteroides coprocola DSM 17136]
Length = 189
Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats.
Identities = 74/179 (41%), Positives = 109/179 (60%), Gaps = 2/179 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V I++ R F+D RG+F +++S + FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IDGVVIIEPRLFKDDRGYFFESFSERDFNAQVRTVRFVQDNESKSS-YGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ+KLVR + G + D+AVDIR+ SPT+G V++E++ N Q +IP GFAHGF L
Sbjct: 67 FAQSKLVRVVKGAVLDVAVDIRKGSPTFGQHVAVELTEENHRQFFIPRGFAHGFSVLTDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +FY+ + + +AW D ++ I W + + +SEKD++ P L D F Y
Sbjct: 127 VIFQYKCDNFYAPQSEGAIAWDDPALGIDWKIPAEKV-ILSEKDKHHPLLKDADWLFSY 184
>gi|165918222|ref|ZP_02218308.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii RSA 334]
gi|165918082|gb|EDR36686.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii RSA 334]
Length = 189
Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats.
Identities = 79/183 (43%), Positives = 114/183 (62%), Gaps = 2/183 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M I V ++K + F D RG+F +T+ + G+ F+QDNHS S G +RGLH+Q
Sbjct: 8 MPIPEVILIKPKVFTDDRGFFIETFKQSDFRRHGINGEFLQDNHSLSMKKGVLRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVR + G++FD+AVD+RR SPT+G WVS E+S+ N ++IP GFAHG + LE
Sbjct: 68 DPHAQGKLVRVVLGKVFDVAVDLRRESPTFGKWVSTELSSTNNHMLWIPPGFAHGMLVLE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NT ++YK T Y + + W D I+I WP+ + +L +SEKD FL + + +
Sbjct: 128 ENTHLLYKCTAEYVPASERYIRWDDPDINIKWPIKNNLL--LSEKDAAGVFLQRAEINAQ 185
Query: 181 YDG 183
Y G
Sbjct: 186 YHG 188
>gi|222148114|ref|YP_002549071.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Agrobacterium vitis S4]
gi|221735102|gb|ACM36065.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Agrobacterium vitis S4]
Length = 187
Score = 271 bits (695), Expect = 2e-71, Method: Composition-based stats.
Identities = 84/180 (46%), Positives = 122/180 (67%), Gaps = 1/180 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V ++ ++F D+RG+F +T+ + L + FVQDN SFS + GT+RGLHFQ
Sbjct: 7 KLSGVFLITPKRFGDARGYFMETFRASLFESEVGSFTFVQDNKSFSAEVGTVRGLHFQLN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLV C AG + D+AVDIR+ SPTYG V E++A NG Q+++P GFAHGF TL+
Sbjct: 67 PRAQGKLVSCAAGALLDVAVDIRQGSPTYGQMVKAELTAENGCQLWVPPGFAHGFCTLQP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
NT + YKVTD+YS +HD G+ W D ++ I WP+ + +SEKD+ P L+++++ F Y
Sbjct: 127 NTVISYKVTDYYSPDHDRGLLWNDPALAIDWPVTEDN-AILSEKDKKQPKLSELETNFVY 185
>gi|160863322|gb|ABX51888.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Cronobacter sakazakii]
Length = 180
Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats.
Identities = 84/175 (48%), Positives = 119/175 (68%), Gaps = 4/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I+ V I + + F D RG+F ++++ K + +G + FVQDNHS S CG +RGLH+Q
Sbjct: 7 DISDVLIFEPKVFGDDRGFFFESFNQKTFMEAVGRKVTFVQDNHSKSA-CGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR+NS T+G WV + +SA+N Q++IP GFAHGF+ L
Sbjct: 66 DPYAQGKLVRCVVGEVFDVAVDIRKNSTTFGKWVGVNLSADNKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++Y+ E D G+ W D+ I I WPL+ P +S KD+N LN+I
Sbjct: 126 ETAEFVYKTTNYYNPESDRGIIWNDEDISIEWPLVRD--PILSHKDKNQKKLNEI 178
>gi|326391871|ref|ZP_08213383.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoanaerobacter
ethanolicus JW 200]
gi|325992089|gb|EGD50569.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoanaerobacter
ethanolicus JW 200]
Length = 183
Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats.
Identities = 79/174 (45%), Positives = 108/174 (62%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++T FED+RG+F ++Y+ + K G+ VFVQDN S S G +RGLHFQ+
Sbjct: 10 EIEGLYIIETGIFEDNRGYFMESYNYRDFKAAGIDAVFVQDNQSKS-KKGVLRGLHFQKK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R++S TYG WV + +S N Q YIP GFAHGF+ L
Sbjct: 69 -HPQGKLVRVLKGEVFDVAVDLRKDSKTYGKWVGVILSDKNKRQFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YK TDFY + + G+ W D I+I WPL +SEKD+ P L +
Sbjct: 128 EAEFFYKCTDFYYPDDEGGIIWNDPDINIQWPLDGIEEIILSEKDKKWPRLRDL 181
>gi|149913028|ref|ZP_01901562.1| hypothetical protein RAZWK3B_03530 [Roseobacter sp. AzwK-3b]
gi|149813434|gb|EDM73260.1| hypothetical protein RAZWK3B_03530 [Roseobacter sp. AzwK-3b]
Length = 188
Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats.
Identities = 87/180 (48%), Positives = 116/180 (64%), Gaps = 2/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V +L+ R+F D RG+F+++++ K +LG+ FVQDNHS S GT+RGLHFQ P
Sbjct: 7 KLPGVLLLEPRRFGDERGFFAESWNRKTFLDLGIDIDFVQDNHSVSAAVGTVRGLHFQSP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVRC GR D+AVD R+ SPTYG WV E+S NGLQ+ +P GF HGF+T E
Sbjct: 67 PHAQDKLVRCGRGRFLDVAVDARKGSPTYGQWVGCELSFENGLQLLVPKGFLHGFVTREP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+TE+IYK +D+Y+ + D V + D + I W L P +SEKD DSPF Y
Sbjct: 127 DTEIIYKCSDYYAPDCDGAVRFDDPDLGIDWGLDGA--PVLSEKDAKAQSFAAFDSPFIY 184
>gi|167770814|ref|ZP_02442867.1| hypothetical protein ANACOL_02165 [Anaerotruncus colihominis DSM
17241]
gi|167666854|gb|EDS10984.1| hypothetical protein ANACOL_02165 [Anaerotruncus colihominis DSM
17241]
Length = 184
Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats.
Identities = 81/179 (45%), Positives = 115/179 (64%), Gaps = 3/179 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V + + F D RG+F +++S ++ +E GL FVQDNHS S GT+RG+HFQR
Sbjct: 7 ELDGVYLAEPEVFGDHRGFFMESWSKRVFEEAGLFYDFVQDNHSCSTVKGTLRGIHFQRG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQAKLVRC+ G++ D+AVD+R NSP Y WV++E+SA N Q+ IP GF HGF+TL
Sbjct: 67 DKAQAKLVRCVKGKVLDVAVDLRPNSPAYKRWVAVELSAENKKQLLIPRGFGHGFLTLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
E +YK ++Y+ E D G+ W D + I W + + P +S KDQN P+L + FE
Sbjct: 127 EVEFLYKADNYYAPEADGGIRWNDPELAIDWGISE---PVLSGKDQNAPWLKDAATGFE 182
>gi|167038025|ref|YP_001665603.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116438|ref|YP_004186597.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166856859|gb|ABY95267.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929529|gb|ADV80214.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 183
Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 107/174 (61%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++T FED+RG+F ++Y+ K GL VFVQDN S S G +RGLHFQ+
Sbjct: 10 EIEGLYIIETGIFEDNRGYFMESYNYNDFKVAGLDMVFVQDNQSKS-KRGVLRGLHFQKK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R+NS TYG WV + +S N Q YIP GFAHGF+ L
Sbjct: 69 -HPQGKLVRVLKGEVFDVAVDLRKNSKTYGKWVGVILSEENKKQFYIPEGFAHGFLVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YK T+FY + + G+ W D I+I WPL +SEKD+ P L +
Sbjct: 128 EAEFFYKCTNFYYPDDEGGIIWNDPDINIQWPLDGIEEIILSEKDKKWPRLKDL 181
>gi|206901649|ref|YP_002250032.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dictyoglomus thermophilum
H-6-12]
gi|206740752|gb|ACI19810.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dictyoglomus thermophilum
H-6-12]
Length = 194
Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats.
Identities = 88/181 (48%), Positives = 120/181 (66%), Gaps = 2/181 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + +++T+ F D+RG+F +TY+ K +E+GL+ FVQDN S S G +RGLHFQ
Sbjct: 11 IKDLVLIETKIFRDNRGFFMETYNQKEFEEIGLKLNFVQDNLSLS-KKGVLRGLHFQFK- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q KL+R I G+++D+AVD+R NSPT+G W +E++ NGL YIP GFAHGF+TLE +
Sbjct: 69 YPQGKLIRVIKGKVYDVAVDLRINSPTFGKWYGVELTGENGLAFYIPEGFAHGFLTLEDD 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
T YK T+ Y E+DSG+ W D IDI WPL +SEKD+NLP L I + +
Sbjct: 129 TYFFYKCTEIYYPEYDSGIIWNDPDIDIKWPLEKVEELIISEKDKNLPKLKDIIDKLKEE 188
Query: 183 G 183
G
Sbjct: 189 G 189
>gi|257893558|ref|ZP_05673211.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
1,231,408]
gi|257829937|gb|EEV56544.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
1,231,408]
Length = 197
Score = 271 bits (694), Expect = 3e-71, Method: Composition-based stats.
Identities = 77/182 (42%), Positives = 112/182 (61%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ F D RG+F+++YS E GL+ FVQDNHS S + G +RGLHFQ+
Sbjct: 14 KLTDVKIVEMDVFGDHRGFFTESYSKAKFAEHGLKYDFVQDNHSLSAEAGVLRGLHFQKG 73
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ VDIR+ SPTYG W +S +N Q+ +P G+AHGF+TL
Sbjct: 74 EAAQTKLIRVVTGAVLDVVVDIRKGSPTYGQWDGFILSEHNHRQLLVPKGYAHGFVTLTP 133
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS--PF 179
N +YK ++Y+ E D G+A+ D + I WP+ D +SEKD P L + ++ PF
Sbjct: 134 NVNFLYKCDNYYNAEADGGIAFDDPDLAIDWPI-DPSRAIMSEKDHRHPTLKEFEAENPF 192
Query: 180 EY 181
Y
Sbjct: 193 VY 194
>gi|199599660|ref|ZP_03213036.1| dTDP-4-dehydrorhamnose 3,5-epimerase related enzyme [Lactobacillus
rhamnosus HN001]
gi|258508993|ref|YP_003171744.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus GG]
gi|199589448|gb|EDY97578.1| dTDP-4-dehydrorhamnose 3,5-epimerase related enzyme [Lactobacillus
rhamnosus HN001]
gi|257148920|emb|CAR87893.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus GG]
gi|259650286|dbj|BAI42448.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus GG]
Length = 190
Score = 271 bits (694), Expect = 3e-71, Method: Composition-based stats.
Identities = 78/180 (43%), Positives = 114/180 (63%), Gaps = 1/180 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V++++T F D+RG+F++TY+ + E G+++ F QDN S S + G +RG+H+Q
Sbjct: 9 KLKDVKLVETDVFGDNRGFFTETYTREKFVEAGIKNDFNQDNQSLSAEAGVLRGMHYQMA 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVR + G + D+ VDIR+ SPTYG W +S N Q+ +P GFAHGF+TL
Sbjct: 69 PYAQTKLVRVVTGVVEDVLVDIRKGSPTYGQWEGYILSQYNHRQLLVPKGFAHGFITLTP 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N +YKV +Y+ E D G+A+ D I I WP+ T +SEKDQ+ P L ++ F Y
Sbjct: 129 NVNFVYKVEGYYAPEADRGIAFDDPDIGIDWPMS-TAHLIMSEKDQHHPQLKDAENNFVY 187
>gi|225590484|gb|ACN94858.1| RmlC [Lactobacillus rhamnosus GG]
Length = 199
Score = 271 bits (694), Expect = 3e-71, Method: Composition-based stats.
Identities = 78/180 (43%), Positives = 114/180 (63%), Gaps = 1/180 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V++++T F D+RG+F++TY+ + E G+++ F QDN S S + G +RG+H+Q
Sbjct: 18 KLKDVKLVETDVFGDNRGFFTETYTREKFIEAGIKNDFNQDNQSLSAEAGVLRGMHYQMA 77
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVR + G + D+ VDIR+ SPTYG W +S N Q+ +P GFAHGF+TL
Sbjct: 78 PYAQTKLVRVVTGVVEDVLVDIRKGSPTYGQWEGYILSQYNHRQLLVPKGFAHGFITLTP 137
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N +YKV +Y+ E D G+A+ D I I WP+ L +SEKDQ+ P L ++ F Y
Sbjct: 138 NVNFVYKVEGYYAPEADRGIAFDDPDIGIDWPMSKAHL-IMSEKDQHHPQLKDAENNFIY 196
>gi|152971033|ref|YP_001336142.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|150955882|gb|ABR77912.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 184
Score = 271 bits (694), Expect = 3e-71, Method: Composition-based stats.
Identities = 83/176 (47%), Positives = 112/176 (63%), Gaps = 2/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I + R F D+RG+F +++SSK+ E G Q FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPEVLIFEPRVFGDARGFFFESFSSKVFNEAVGRQVEFVQDNHSQS-QKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC+ G +FD+AVDIRR+SPT+G WV +SA N Q++IP GFAHGFM L
Sbjct: 66 DPHAQGKLVRCVEGEVFDVAVDIRRSSPTFGKWVGAVLSAENKRQLWIPEGFAHGFMALS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK T++Y+ + + + W D I I WP L S+SEKD L +
Sbjct: 126 DTVQFVYKATNYYAPQSEQSIIWNDPEIGIDWPALSDCALSLSEKDLQAHTLATAE 181
>gi|323960875|gb|EGB56495.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli H489]
Length = 183
Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats.
Identities = 81/175 (46%), Positives = 114/175 (65%), Gaps = 3/175 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ KL +E G FVQDNHS S G +RGLH+Q P
Sbjct: 8 IPGVLIFEPKVFGDERGFFFESFNHKLFEEAVGYPVTFVQDNHSKSSK-GVLRGLHYQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVRC+AG +FD+AVDIR++SP++G WV + +S N Q++IP GFAHGF+TL
Sbjct: 67 PHAQGKLVRCVAGEVFDVAVDIRKSSPSFGQWVGVHLSGENKRQLWIPEGFAHGFVTLTE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK T++Y+ D G+AW D +I I WP L + + S KD L +
Sbjct: 127 SAEFLYKTTNYYAPASDRGIAWNDPTIGIRWPELKADILT-SAKDSIAKSLESAE 180
>gi|3608395|gb|AAC35921.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis OG1RF]
Length = 190
Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats.
Identities = 77/179 (43%), Positives = 109/179 (60%), Gaps = 3/179 (1%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+I++ F D RG+F+++YS E GL FVQDNHS S + G +RGLHFQ+ A
Sbjct: 10 DVKIIEMDVFGDHRGFFTESYSKAKFAEHGLDFDFVQDNHSLSTEAGVLRGLHFQKGEAA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KL+R + G + D+ VDIR+ SPTYG W +S +N Q+ +P GFAHGF+TL N
Sbjct: 70 QTKLIRVVTGAVLDVIVDIRKGSPTYGQWEGYILSEHNHRQLLVPKGFAHGFVTLTPNVN 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS--PFEY 181
+YK ++Y+ D G+A+ D ++ I WP+ SEKDQ P L + ++ PF Y
Sbjct: 130 FMYKCDNYYNAAADGGIAFNDPALAIDWPIAPE-KAITSEKDQKHPTLKEFEAENPFIY 187
>gi|146293633|ref|YP_001184057.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella putrefaciens
CN-32]
gi|145565323|gb|ABP76258.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella putrefaciens
CN-32]
Length = 182
Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats.
Identities = 82/172 (47%), Positives = 115/172 (66%), Gaps = 4/172 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ + F D RG+F ++++ + + G FVQDNHS S G +RGLH+Q
Sbjct: 7 KIPDVKIIEPKVFGDERGFFFESFNQQQFEAAVGYSVKFVQDNHSKSSK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PPYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP+GFAHGF+TL
Sbjct: 66 PPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGQWVGIHLSAENKRQLWIPSGFAHGFVTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
E +YK T+FY+ + + + W D I I WPL+D PS+S KDQ L
Sbjct: 126 ETAEFLYKTTNFYAPQSEGSICWDDTDIGIEWPLVDK--PSLSSKDQMSSLL 175
>gi|150008449|ref|YP_001303192.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Parabacteroides distasonis
ATCC 8503]
gi|255014199|ref|ZP_05286325.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_7]
gi|256841550|ref|ZP_05547057.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Parabacteroides sp. D13]
gi|301309339|ref|ZP_07215281.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 20_3]
gi|149936873|gb|ABR43570.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Parabacteroides distasonis
ATCC 8503]
gi|256737393|gb|EEU50720.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Parabacteroides sp. D13]
gi|300832428|gb|EFK63056.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 20_3]
Length = 185
Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats.
Identities = 71/179 (39%), Positives = 108/179 (60%), Gaps = 1/179 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ + +D+RG+F + + +E + FVQDN S S G +RGLH+Q P
Sbjct: 8 IPGVWIIEPKVLKDARGYFMEAFKQAEFEEHIGKIQFVQDNESCSSK-GVLRGLHYQLAP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+Q+KLVR I GR+ D+AVD+R SPT+G +V++E+S N Q++IP GFAHGF L
Sbjct: 67 YSQSKLVRVIKGRVLDVAVDVREGSPTFGKYVAVELSDENKRQLFIPQGFAHGFHVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YKV + Y+ H+ G+ + D ++ + W + D ++SEKD P L + F+Y
Sbjct: 127 AIFTYKVDNPYTPTHERGIRYDDPTVHVDWSITDPESINLSEKDTKAPLLKDAELNFKY 185
>gi|110635095|ref|YP_675303.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mesorhizobium sp. BNC1]
gi|110286079|gb|ABG64138.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chelativorans sp. BNC1]
Length = 189
Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats.
Identities = 92/181 (50%), Positives = 124/181 (68%), Gaps = 2/181 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M + V+ + KF D RG+FS+TY++K E G+ FVQDNHS S GT+RGLHFQ+
Sbjct: 7 MELEGVQEILPEKFSDERGFFSETYNAKAFAEAGIAVEFVQDNHSLSSVPGTVRGLHFQK 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVR + G I D+AVDIR SPT+G WV +E+S+ Q++IP G+AHGFMTLE
Sbjct: 67 PPFAQDKLVRVVRGAILDVAVDIRAGSPTFGRWVGVELSSRKWNQLFIPKGYAHGFMTLE 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+TEV+YKV+ FYS EHD + + D +I I WP I P +S KD+ P L ++++ F
Sbjct: 127 PDTEVVYKVSAFYSREHDQAIRFDDPAIGIAWP--KEIKPLLSGKDRAAPDLAEVETGFR 184
Query: 181 Y 181
Y
Sbjct: 185 Y 185
>gi|227887091|ref|ZP_04004896.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli 83972]
gi|227835441|gb|EEJ45907.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli 83972]
gi|297499073|gb|ADI43259.1| RmlC [Escherichia coli]
gi|307554110|gb|ADN46885.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli ABU 83972]
Length = 180
Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats.
Identities = 79/173 (45%), Positives = 111/173 (64%), Gaps = 4/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V IL+ F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLILEPEVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKSIK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++S T+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSGTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
EV+YK +Y+ H+ + W D ++I WP T L ++S+KD N L
Sbjct: 126 DLAEVLYKTNQYYAPSHERNIIWNDPLLNIKWPR--TALITLSDKDANGEKLE 176
>gi|56684495|gb|AAW22462.1| RmlC [Lactobacillus rhamnosus]
gi|56684515|gb|AAW22480.1| RmlC [Lactobacillus rhamnosus]
Length = 190
Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats.
Identities = 78/180 (43%), Positives = 114/180 (63%), Gaps = 1/180 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V++++T F D+RG+F++TY+ + E G+++ F QDN S S + G +RG+H+Q
Sbjct: 9 KLKDVKLVETDVFGDNRGFFTETYTREKFVEAGIKNDFNQDNQSLSAEAGVLRGMHYQMA 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVR + G + D+ VDIR+ SPTYG W +S N Q+ +P GFAHGF+TL
Sbjct: 69 PYAQTKLVRVVTGVVEDVLVDIRKGSPTYGQWEGYILSQYNHRQLLVPKGFAHGFITLTP 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N +YKV +Y+ E D G+A+ D I I WP+ T +SEKDQ+ P L ++ F Y
Sbjct: 129 NVNFVYKVEGYYAPEADRGIAFDDPDIGIDWPMS-TAHLIMSEKDQHHPQLKDAENNFIY 187
>gi|163743492|ref|ZP_02150870.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Phaeobacter gallaeciensis
2.10]
gi|161383195|gb|EDQ07586.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Phaeobacter gallaeciensis
2.10]
Length = 184
Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats.
Identities = 91/182 (50%), Positives = 120/182 (65%), Gaps = 4/182 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V+IL +F D+RG+F ++++ + E GL FVQDNHS S + GT+RGLHFQ P
Sbjct: 7 DLPGVKILTPARFGDARGFFCESWNKARMAEAGLDFDFVQDNHSLSMEVGTLRGLHFQAP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQAKLVRC G +FD+AVDIR+ SPTYG W +E+SA NG Q+ IP GF HGF+T
Sbjct: 67 PHAQAKLVRCGQGALFDVAVDIRKGSPTYGRWTGVELSAANGRQLLIPAGFLHGFITRSP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
TEV+YK +Y+ + D GVAW S I W T P +SEKD P +DSPF +
Sbjct: 127 GTEVLYKCDAYYAPDCDGGVAWD--SCGIDWGFDGT--PVLSEKDAAAPRFEDLDSPFVW 182
Query: 182 DG 183
+G
Sbjct: 183 EG 184
>gi|90425680|ref|YP_534050.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
BisB18]
gi|90107694|gb|ABD89731.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
BisB18]
Length = 184
Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats.
Identities = 97/180 (53%), Positives = 125/180 (69%), Gaps = 2/180 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NI V +L ++F D RGWF +TYS L+ LG++ FVQDNHS S GT+RGLHFQ
Sbjct: 6 LNIPGVVVLTPKRFADDRGWFMETYSHPALQALGIELDFVQDNHSLSLHTGTLRGLHFQT 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQAKLVRC+ GRI D+AVD+R NSPTYG + S E+SA + QI+IP GFAHGF+TLE
Sbjct: 66 PPHAQAKLVRCVRGRILDVAVDVRANSPTYGQYASAELSAADARQIFIPVGFAHGFVTLE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+TEV+YKV+D Y+ + D G+ W D +I W + P +S KD+ LP L SPF
Sbjct: 126 PDTEVVYKVSDIYAPQCDGGIRWNDPTIAFPWNIEHG--PFLSPKDEKLPLLADFVSPFR 183
>gi|295792732|gb|ADG29295.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus alvei]
Length = 183
Score = 271 bits (693), Expect = 4e-71, Method: Composition-based stats.
Identities = 82/178 (46%), Positives = 116/178 (65%), Gaps = 3/178 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + I++ D RG+F ++YS K L ELG+ F+QDN S S + G IRGLHFQ
Sbjct: 6 LPLKDAYIIEPVIHGDHRGFFMESYSKKKLNELGIYFNFIQDNQSLSLETGVIRGLHFQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KL+R I+G I+D+ VDIR++S T+G WV + +S +N Q+ +P GFAHGF TL
Sbjct: 66 NPKAQTKLIRVISGAIYDVIVDIRKSSSTFGQWVGVILSEHNHRQLLVPKGFAHGFCTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
NT+V+YKV ++YS +HD G+ W D S+ I WP T P +S+KD+ LP L + +
Sbjct: 126 PNTQVLYKVDEYYSPDHDRGIRWDDPSLGIDWP---TSKPILSDKDRLLPVLKEAEIN 180
>gi|91211322|ref|YP_541308.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli UTI89]
gi|300986909|ref|ZP_07177887.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 45-1]
gi|91072896|gb|ABE07777.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase) (dTDP-L-rhamnose synthetase) [Escherichia
coli UTI89]
gi|288816226|gb|ADC54948.1| RmlC [Escherichia coli]
gi|294493064|gb|ADE91820.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli IHE3034]
gi|300407838|gb|EFJ91376.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 45-1]
gi|307626418|gb|ADN70722.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli
UM146]
gi|315295252|gb|EFU54587.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 153-1]
Length = 185
Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats.
Identities = 81/178 (45%), Positives = 113/178 (63%), Gaps = 4/178 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++Y+ ++ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFFESYNQRVFEEAVGRKVEFVQDNHSKS-RKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQAKLVRCI G +FDIAVDIR++SP +G WV + +SA N Q++IP GFAHGF+ +
Sbjct: 66 EPYAQAKLVRCIEGEVFDIAVDIRKSSPFFGKWVGVTLSAENKRQLWIPEGFAHGFVVIS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
E +YK ++YS + + + + DK + I WPL +SEKD N P +I S
Sbjct: 126 DTAEFVYKTNNYYSQQAERSIIFDDKDLGIAWPL--NTHYILSEKDLNAPTFKKISSN 181
>gi|291513885|emb|CBK63095.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alistipes shahii WAL 8301]
Length = 187
Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats.
Identities = 77/181 (42%), Positives = 104/181 (57%), Gaps = 2/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +L+ F D+RG+F + +S + EL FVQDN S S G +RGLHFQ+
Sbjct: 7 EIPGVVLLEPEVFGDARGYFMERFSQRRFDELVGPVRFVQDNESKS-RYGVVRGLHFQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
YAQAKLV + GR+ D+AVDIRR SPT+G V+ + N Q++IP GFAHGF L
Sbjct: 66 EYAQAKLVSVVRGRVLDVAVDIRRGSPTFGRHVAALLDGENKRQLFIPRGFAHGFAVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK ++Y+ + G+AW D ++ I W L + +SEKD+ P L FEY
Sbjct: 126 EAVFQYKCDNYYAPGSEGGIAWDDPALAIDWRLPAGEI-LLSEKDRRHPKLADAPELFEY 184
Query: 182 D 182
D
Sbjct: 185 D 185
>gi|313894857|ref|ZP_07828417.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas sp. oral taxon
137 str. F0430]
gi|312976538|gb|EFR41993.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas sp. oral taxon
137 str. F0430]
Length = 184
Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats.
Identities = 84/181 (46%), Positives = 116/181 (64%), Gaps = 4/181 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ VRIL+ + F D+RGWF +++S K ++ G+ FVQDNHSFS + GT+RGLH+Q
Sbjct: 7 KLPGVRILEPQVFGDARGWFMESWSQKKMENAGIHVDFVQDNHSFSAERGTLRGLHYQLN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKL+R G +FD+AVDIR SPTY W+ +E+SA N Q++IP GFAHGF+TL
Sbjct: 67 PMAQAKLLRVSRGAVFDVAVDIRCGSPTYAQWIGIELSAENYRQLFIPRGFAHGFITLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ-IDSPFE 180
N EV YK + Y+ + D + W D +I + WP + +SEKD P L + + F
Sbjct: 127 NVEVQYKADNLYAPDCDGNIRWDDPAIGVAWPFTPVV---LSEKDAIAPSLAERTELNFV 183
Query: 181 Y 181
Y
Sbjct: 184 Y 184
>gi|262192433|ref|ZP_06050585.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae CT 5369-93]
gi|262031697|gb|EEY50283.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae CT 5369-93]
Length = 178
Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 111/176 (63%), Gaps = 6/176 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T++ K +EL G +FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPTVFGDERGFFMETWNQKRFEELVTGKPTLFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 TEN-TQGKLVRVVSGEVFDVAVDIRKDSPTFGKWVGVYLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ + + + W D+ + I WP+ + P +SEKD L +I
Sbjct: 125 SEEAEFVYKCTDYYNPKAEVSIRWNDEKLAIEWPI--STKPQLSEKDTQALQLAKI 178
>gi|255263144|ref|ZP_05342486.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thalassiobium sp. R2A62]
gi|255105479|gb|EET48153.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thalassiobium sp. R2A62]
Length = 190
Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats.
Identities = 83/182 (45%), Positives = 115/182 (63%), Gaps = 1/182 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V IL ++ D RG+FS+ ++S+ E G++ +VQDNHSF+ + G IRG+H QRP
Sbjct: 7 KLPGVLILTPKRHGDDRGFFSECWNSRTYAENGIEINYVQDNHSFNNEVGVIRGMHAQRP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ Q KLVRC G +FD+ VD+R SPTYG W+ E+S NG Q+ +P G HGFMTL
Sbjct: 67 PHPQIKLVRCGHGLLFDVVVDVRAGSPTYGQWIGCELSFENGRQLLVPAGCLHGFMTLLP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
TE+IYK +D+Y+ E + + + D I I WPL P +S+KD+ P L SPF Y
Sbjct: 127 GTEIIYKCSDYYAPETECSLRFDDPDIGIKWPLGGG-TPILSDKDKAAPLLKDFKSPFTY 185
Query: 182 DG 183
G
Sbjct: 186 PG 187
>gi|154490151|ref|ZP_02030412.1| hypothetical protein PARMER_00381 [Parabacteroides merdae ATCC
43184]
gi|154089043|gb|EDN88087.1| hypothetical protein PARMER_00381 [Parabacteroides merdae ATCC
43184]
Length = 217
Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats.
Identities = 68/180 (37%), Positives = 110/180 (61%), Gaps = 1/180 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ + F+D+RG+F + + +E + FVQDN S S G +RGLH+Q
Sbjct: 39 EIPGVWIIEPKVFKDARGYFMEAWKKAEFEEHIGKVEFVQDNESCSSK-GVLRGLHYQLA 97
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY+Q+KLVR I G + D+AVD+R+ SPT+G +V++E+S N Q +IP GFAHGF +
Sbjct: 98 PYSQSKLVRVIKGCVLDVAVDLRKGSPTFGKYVAVELSDENKRQFFIPQGFAHGFHVMSE 157
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YKV + Y+ H+ G+ + D ++ + W + + + ++S+KD+N L + FE+
Sbjct: 158 EAVFTYKVDNPYAPTHERGLRFDDPTVGVDWKITEPAILNLSDKDRNAALLQDAEINFEF 217
>gi|256017789|ref|ZP_05431654.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella sp. D9]
gi|332278810|ref|ZP_08391223.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella sp. D9]
gi|332101162|gb|EGJ04508.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella sp. D9]
Length = 185
Score = 270 bits (692), Expect = 6e-71, Method: Composition-based stats.
Identities = 81/178 (45%), Positives = 113/178 (63%), Gaps = 4/178 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFFESFNQKIFEEAVGRKVEFVQDNHSKS-RKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQAKLVRCI G +FDIAVDIR++SP +G WV + +SA N Q++IP GFAHGF+ +
Sbjct: 66 EPYAQAKLVRCIEGEVFDIAVDIRKSSPFFGKWVGVTLSAENKRQLWIPEGFAHGFVVIS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
E +YK ++YS + + + + DK + I WPL +SEKD N P +I S
Sbjct: 126 DTAEFVYKTNNYYSQQAERSIIFDDKDLGIAWPL--NTHYILSEKDLNAPTFKKISSN 181
>gi|258509034|ref|YP_003171785.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus GG]
gi|257148961|emb|CAR87934.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus GG]
gi|259650325|dbj|BAI42487.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus GG]
Length = 190
Score = 270 bits (692), Expect = 6e-71, Method: Composition-based stats.
Identities = 78/180 (43%), Positives = 114/180 (63%), Gaps = 1/180 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V++++T F D+RG+F++TY+ + E G+++ F QDN S S + G +RG+H+Q
Sbjct: 9 KLKDVKLVETDVFGDNRGFFTETYTREKFIEAGIKNDFNQDNQSLSAEAGVLRGMHYQMA 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVR + G + D+ VDIR+ SPTYG W +S N Q+ +P GFAHGF+TL
Sbjct: 69 PYAQTKLVRVVTGVVEDVLVDIRKGSPTYGQWEGYILSQYNHRQLLVPKGFAHGFITLTP 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N +YKV +Y+ E D G+A+ D I I WP+ T +SEKDQ+ P L ++ F Y
Sbjct: 129 NVNFVYKVEGYYAPEADRGIAFDDPDIGIDWPMS-TAHLIMSEKDQHHPQLKDAENNFIY 187
>gi|237808785|ref|YP_002893225.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Tolumonas auensis DSM 9187]
gi|237501046|gb|ACQ93639.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Tolumonas auensis DSM 9187]
Length = 182
Score = 270 bits (692), Expect = 6e-71, Method: Composition-based stats.
Identities = 75/174 (43%), Positives = 105/174 (60%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V+I++ F D RG+F +T+ + EL + FVQDNHS S G +RGLH+Q
Sbjct: 7 SIPDVKIIEPAVFGDERGFFMETWQEQKFNELVCERRFVQDNHSKSRQ-GILRGLHYQTE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVR IAG +FD+AVDIRR+SPT+G V + +SA N Q+++P GFAHGF
Sbjct: 66 -QAQGKLVRVIAGEVFDVAVDIRRSSPTFGQSVGVLLSAENKRQLWVPEGFAHGFYVTTE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++Y+ + + W D ++I WPL+D PS+S KD
Sbjct: 125 TAEFVYKCTNYYNPSAEHSIRWNDPELNIQWPLVDGQQPSLSAKDAEGKLFKDA 178
>gi|167648897|ref|YP_001686560.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caulobacter sp. K31]
gi|167351327|gb|ABZ74062.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caulobacter sp. K31]
Length = 190
Score = 270 bits (692), Expect = 6e-71, Method: Composition-based stats.
Identities = 82/184 (44%), Positives = 116/184 (63%), Gaps = 6/184 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQ 59
+++ V ++ + DSRGWFS+T+ L+E G + FVQDNH S G +RGLHFQ
Sbjct: 6 LSVPDVLLITPARHGDSRGWFSETFRQSALEEAGFEGGAFVQDNHVRSTRRGILRGLHFQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+PP+AQ KL+RC G IFD+AVDIRR SPT+G WV E+SA+N Q+ +P GFAH + TL
Sbjct: 66 KPPHAQDKLLRCARGAIFDVAVDIRRGSPTFGQWVGAELSADNARQLLVPKGFAHAYCTL 125
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVS--EKDQNLPFLNQIDS 177
EV+YKVTD+Y+ + + W D ++ I WP+ +S ++D L +D+
Sbjct: 126 TEECEVLYKVTDYYAPAAEGALRWNDPAVGIDWPVP---AAEISTNDRDAAASLLADLDT 182
Query: 178 PFEY 181
PF Y
Sbjct: 183 PFTY 186
>gi|87201249|ref|YP_498506.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Novosphingobium
aromaticivorans DSM 12444]
gi|87136930|gb|ABD27672.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Novosphingobium
aromaticivorans DSM 12444]
Length = 181
Score = 270 bits (692), Expect = 6e-71, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 110/176 (62%), Gaps = 3/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I +L+ R F D RG+F ++++++ + GL FVQDNHS S G +RG+HFQ
Sbjct: 7 DIEGPLVLEPRVFGDERGFFMESWNAEAFAKAGLDLPFVQDNHSRS-QKGVLRGMHFQN- 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLVR + G +FD VD+R++SPT+G W + +SA N ++P GFAHGF+TLE
Sbjct: 65 PGPQGKLVRVVRGAVFDAVVDLRKSSPTFGKWTGVVLSAENKRMFWVPEGFAHGFLTLED 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+T+ +YK T Y+ +H+ +AW D + I WPL D I P +S KD + L + +
Sbjct: 125 DTDFLYKCTAPYAPQHECSLAWDDPDVGIDWPL-DGIEPKLSAKDADGVRLADVKA 179
>gi|120598288|ref|YP_962862.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sp. W3-18-1]
gi|120558381|gb|ABM24308.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sp. W3-18-1]
Length = 182
Score = 270 bits (692), Expect = 6e-71, Method: Composition-based stats.
Identities = 76/176 (43%), Positives = 115/176 (65%), Gaps = 3/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ R F D RG+F ++++ + + G FVQDNHS S G +RGLH+Q
Sbjct: 7 KIPDVKIIEPRVFGDDRGFFFESFNQQQFEAAIGYPVNFVQDNHSKSSK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ Q+KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 66 APHVQSKLVRCVVGEVFDVAVDIRQSSPTFGQWVGVHLSAENKRQLWIPEGFAHGFVTLR 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK T++Y D G+ W D+ + + WP+ IL ++S+KD+ P + +
Sbjct: 126 ETAEFLYKTTNYYCAASDRGIQWNDEKLAVAWPIEGLIL-TLSDKDKRQPIFEKAE 180
>gi|254430167|ref|ZP_05043870.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanobium sp. PCC 7001]
gi|197624620|gb|EDY37179.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanobium sp. PCC 7001]
Length = 191
Score = 270 bits (692), Expect = 6e-71, Method: Composition-based stats.
Identities = 79/176 (44%), Positives = 106/176 (60%), Gaps = 3/176 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V +L R F D RG+F ++++ FVQDNHS S G +RGLH+Q PP
Sbjct: 14 LEGVLLLTPRVFGDDRGFFFESWNQNAFNAAAGPTAFVQDNHSRSVQ-GVLRGLHYQLPP 72
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVRC+ G IFD+AVDIR +SPT+G W + +SA N Q+++P G+AHGF+TL
Sbjct: 73 HPQGKLVRCLVGEIFDVAVDIRPSSPTFGQWGGVRLSAANKQQLWVPAGYAHGFLTLSPE 132
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL--DTILPSVSEKDQNLPFLNQID 176
EV+YK TDF+S E + G+ W D I I WP P +S KD P L + D
Sbjct: 133 AEVLYKTTDFWSKECERGIRWDDPQIGIAWPQEGLPDGQPLLSAKDAVAPALAEAD 188
>gi|329113803|ref|ZP_08242574.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetobacter pomorum DM001]
gi|326696813|gb|EGE48483.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetobacter pomorum DM001]
Length = 190
Score = 270 bits (692), Expect = 6e-71, Method: Composition-based stats.
Identities = 82/183 (44%), Positives = 108/183 (59%), Gaps = 1/183 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V ++ +F D+RG+FS+TY+ + ++E G+ + FVQDN S S G IRGLH Q
Sbjct: 6 LAIPDVILITPPRFGDNRGFFSETYNIERMREAGITEPFVQDNQSLSRQKGVIRGLHCQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC G I+D+AVD R SPTYG WV+ E+S N Q++IP GF HGF TL
Sbjct: 66 DPFAQGKLVRCTRGAIWDVAVDARTGSPTYGKWVAAELSEENWSQLWIPPGFLHGFCTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
N EV YK T YS + V W + I WP+ +SEKD P + F+
Sbjct: 126 ENAEVQYKCTALYSKASERAVIWNSAELGIEWPVK-AEDAVLSEKDLLAPEFSAAKGWFQ 184
Query: 181 YDG 183
Y G
Sbjct: 185 YTG 187
>gi|84489349|ref|YP_447581.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanosphaera stadtmanae DSM
3091]
gi|84372668|gb|ABC56938.1| predicted dTDP-4-dehydrorhamnose 3,5-epimerase [Methanosphaera
stadtmanae DSM 3091]
Length = 185
Score = 270 bits (692), Expect = 6e-71, Method: Composition-based stats.
Identities = 79/178 (44%), Positives = 108/178 (60%), Gaps = 2/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I+ V I++ F D+RG+F +TY ++ G+ FVQDN S S G +RGLHFQR
Sbjct: 10 SIDGVYIIEPTVFGDNRGYFMETYQKEVFSRAGISSEFVQDNQSKS-KKGVLRGLHFQRT 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR I G +FD+AVD+R NS TYG WV + +S+ N Q YIP GFAHGF+ L
Sbjct: 69 QP-QGKLVRVIKGEVFDVAVDLRSNSSTYGKWVGVILSSENKKQFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
E YK TD+Y + + G+ W D++I I WPL D +S+KD+ L + + F
Sbjct: 128 EAEFTYKCTDYYKADDEDGIKWDDETIGIKWPLDDVDEIILSDKDKLWKSLEETNVDF 185
>gi|126741092|ref|ZP_01756774.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseobacter sp. SK209-2-6]
gi|126717856|gb|EBA14576.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseobacter sp. SK209-2-6]
Length = 197
Score = 270 bits (692), Expect = 7e-71, Method: Composition-based stats.
Identities = 93/182 (51%), Positives = 125/182 (68%), Gaps = 4/182 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ ++IL+ +F D+RG+FS++++ + ++E G+ FVQDNHS S + GT+RGLHFQ P
Sbjct: 18 GLPGLKILEPARFGDARGFFSESWNQRRMQEHGIDLDFVQDNHSLSSEVGTLRGLHFQSP 77
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQAKLVRC GR+FD+AVDIR+ SPTYG W E+S +NGLQ+ IP GF HGF+T E
Sbjct: 78 PHAQAKLVRCGRGRLFDVAVDIRKGSPTYGKWFGTELSFDNGLQLLIPAGFLHGFITREP 137
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+TE+IYK TD+Y+ E D VAW I W T P +S+KD P L DSPF Y
Sbjct: 138 DTEIIYKCTDYYAPECDGAVAWDSCD--IDWGFEGT--PMLSDKDAAAPKLADFDSPFTY 193
Query: 182 DG 183
+
Sbjct: 194 EA 195
>gi|293415326|ref|ZP_06657969.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli B185]
gi|291432974|gb|EFF05953.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli B185]
Length = 185
Score = 270 bits (691), Expect = 7e-71, Method: Composition-based stats.
Identities = 76/172 (44%), Positives = 110/172 (63%), Gaps = 2/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKS-TKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
E +YK T++Y+ + +++ D +I I WP L + +S KD N
Sbjct: 126 ETAEFVYKTTNYYNPSFEKSISYSDPTIKIQWPNLQDMHFKLSNKDLNAKNF 177
>gi|187880677|gb|ACD37177.1| RmlC [Escherichia coli]
Length = 181
Score = 270 bits (691), Expect = 7e-71, Method: Composition-based stats.
Identities = 82/176 (46%), Positives = 113/176 (64%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKS-TKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFCVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK +FYS + G+ W DKSI+I WP+ + P +S+KD N D
Sbjct: 126 DEAEFVYKTNNFYSKMQERGILWSDKSINIEWPVQN---PLLSDKDINGQKFVDAD 178
>gi|319791467|ref|YP_004153107.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Variovorax paradoxus EPS]
gi|315593930|gb|ADU34996.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Variovorax paradoxus EPS]
Length = 184
Score = 270 bits (691), Expect = 8e-71, Method: Composition-based stats.
Identities = 73/173 (42%), Positives = 106/173 (61%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D+RG+F ++Y+ ++ + G F QDNHS S G +RGLH+Q
Sbjct: 8 IPDVLILEPKVFGDARGFFLESYNEEVFRRATGSDLAFKQDNHSRSSK-GVLRGLHYQVK 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVDIR SPT+G WV +E++ +N Q+++P G AHGF+ L
Sbjct: 67 QP-QGKLVRVVQGAVFDVAVDIRPTSPTFGKWVGVELNESNHRQLWVPPGLAHGFLVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ +YK TD+Y+ H+ +AW D +I I WPL P +S KD P L +
Sbjct: 126 TADFLYKTTDYYAPAHERSIAWNDPAIGIDWPLS-GASPVLSAKDAAAPTLAE 177
>gi|160940165|ref|ZP_02087510.1| hypothetical protein CLOBOL_05054 [Clostridium bolteae ATCC
BAA-613]
gi|158436745|gb|EDP14512.1| hypothetical protein CLOBOL_05054 [Clostridium bolteae ATCC
BAA-613]
Length = 210
Score = 270 bits (691), Expect = 8e-71, Method: Composition-based stats.
Identities = 75/173 (43%), Positives = 103/173 (59%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + +++ F+D RG+F +TY+ KE GL VFVQDN S S G +RGLHFQ+
Sbjct: 36 DIKGLYVIEPAVFKDERGYFMETYNQNDFKEAGLGMVFVQDNQSMSVK-GVLRGLHFQKQ 94
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G ++D+AVD+R +S TYG W + +SA N Q YIP GFAHGF+ L
Sbjct: 95 -YPQGKLVRVVRGTVYDVAVDLRSDSETYGKWFGVILSAENKKQFYIPEGFAHGFLVLSD 153
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E YK TDFY + G+ W D I + WP+ + +S+KD+ L
Sbjct: 154 EAEFAYKCTDFYHPGDEGGLLWSDPEIGVDWPIEPDMQLIISDKDRKWSGLRD 206
>gi|294675734|ref|YP_003576349.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter capsulatus SB
1003]
gi|294474554|gb|ADE83942.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter capsulatus SB
1003]
Length = 187
Score = 270 bits (691), Expect = 8e-71, Method: Composition-based stats.
Identities = 90/181 (49%), Positives = 118/181 (65%), Gaps = 1/181 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V+++ R+F D RG+FS++YS+K L E G+ VFVQDNHS S GTIRGLHFQ PP
Sbjct: 8 LAGVKLITPRRFGDHRGFFSESYSAKALAEHGIDTVFVQDNHSLSMTVGTIRGLHFQNPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVRC G +FD+AVDIR+ SPTYG W E+S NG Q+ +P GFAHGF+T
Sbjct: 68 HAQDKLVRCGKGCLFDVAVDIRKGSPTYGQWFGAELSFENGRQLLVPKGFAHGFVTRAPE 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
TE+IYK +D+Y E + + W D I I W + D + P +S KD + DS F +
Sbjct: 128 TEIIYKCSDYYHPETEGALIWNDPDIGIDWGMGD-LEPVLSAKDAVAGRIADFDSAFSWQ 186
Query: 183 G 183
G
Sbjct: 187 G 187
>gi|198276704|ref|ZP_03209235.1| hypothetical protein BACPLE_02903 [Bacteroides plebeius DSM 17135]
gi|198270229|gb|EDY94499.1| hypothetical protein BACPLE_02903 [Bacteroides plebeius DSM 17135]
Length = 191
Score = 270 bits (691), Expect = 8e-71, Method: Composition-based stats.
Identities = 75/180 (41%), Positives = 111/180 (61%), Gaps = 2/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ R F+D RG+F +++S + + FVQDN S S G +RGLHFQ+P
Sbjct: 7 EIEGVVIIEPRLFKDERGYFFESFSQRDFDKQVRTIHFVQDNESKSC-YGVLRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR I G + D+AVDIR+ SPT+G V++E++ +N Q +IP GFAHGF L
Sbjct: 66 PFAQSKLVRVIKGAVLDVAVDIRKGSPTFGQHVAVELTEDNHRQFFIPRGFAHGFSVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +FY+ + + +AW D ++ I W + T +SEKD++ P L + F+Y
Sbjct: 126 EVIFQYKCDNFYAPQSEGAIAWNDPALKIDWRIP-TEKVILSEKDKHHPLLADAEWLFDY 184
>gi|34863497|gb|AAQ82927.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Raoultella terrigena]
Length = 184
Score = 270 bits (691), Expect = 9e-71, Method: Composition-based stats.
Identities = 81/176 (46%), Positives = 113/176 (64%), Gaps = 2/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I + R F D+RG+F +++SSK+ E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPEVLICEPRVFGDARGFFFESFSSKIFDEAVGRKVEFVQDNHSQS-QKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC+ G +FD+AVD+RR+SPT+G WV + +SA N Q++IP GFAHGFM L
Sbjct: 66 APHAQGKLVRCVEGEVFDVAVDVRRSSPTFGQWVGVVLSAENKRQLWIPEGFAHGFMALS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK T++Y+ + + + W D I I WP L S+SEKD L +
Sbjct: 126 ETVQFVYKATNYYAPQSERSILWNDPQIGIEWPELSGCALSLSEKDMQAHTLATAE 181
>gi|9957837|gb|AAG09516.1|AF279619_4 dTDP-6-deoxy-D-glucose-3,5-epimerase [Salmonella enterica]
Length = 181
Score = 270 bits (691), Expect = 9e-71, Method: Composition-based stats.
Identities = 82/174 (47%), Positives = 118/174 (67%), Gaps = 4/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I + + F D RG+F ++++ ++ E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVLIFEPKVFGDKRGFFMESFNQRVFDEALGHKVEFVQDNHSKSSK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PPYAQ KLVRC+ G +FD+AVDIR++S T+G WV + +SA+N Q++IP GFAHGF L
Sbjct: 66 PPYAQGKLVRCVVGEVFDVAVDIRKDSETFGKWVGVNLSADNKKQLWIPEGFAHGFYVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E++YK T++Y++ D G+ W D+SI+I WP+ IL +SEKD N L +
Sbjct: 126 ETAELLYKTTNYYNLLSDRGIIWNDRSININWPISGDIL--LSEKDMNHGTLTE 177
>gi|258543636|ref|YP_003189069.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetobacter pasteurianus IFO
3283-01]
gi|256634714|dbj|BAI00690.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetobacter pasteurianus IFO
3283-01]
gi|256637770|dbj|BAI03739.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetobacter pasteurianus IFO
3283-03]
gi|256640824|dbj|BAI06786.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetobacter pasteurianus IFO
3283-07]
gi|256643879|dbj|BAI09834.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetobacter pasteurianus IFO
3283-22]
gi|256646934|dbj|BAI12882.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetobacter pasteurianus IFO
3283-26]
gi|256649987|dbj|BAI15928.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetobacter pasteurianus IFO
3283-32]
gi|256652977|dbj|BAI18911.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256656031|dbj|BAI21958.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetobacter pasteurianus IFO
3283-12]
Length = 190
Score = 270 bits (691), Expect = 9e-71, Method: Composition-based stats.
Identities = 82/183 (44%), Positives = 108/183 (59%), Gaps = 1/183 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V ++ +F D+RG+FS+TY+ + ++E G+ + FVQDN S S G IRGLH Q
Sbjct: 6 LAIPDVILITPPRFGDNRGFFSETYNIERMREAGITEPFVQDNQSLSRQKGVIRGLHCQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC G I+D+AVD R SPTYG WV+ E+S N Q++IP GF HGF TL
Sbjct: 66 DPFAQGKLVRCTRGAIWDVAVDARTGSPTYGKWVAAELSEENWSQLWIPPGFLHGFCTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
N EV YK T YS + V W + I WP+ +SEKD P + F+
Sbjct: 126 ENAEVQYKCTALYSKASERAVIWNSAELGIDWPVK-AEDAVLSEKDLLAPEFSAAKGWFQ 184
Query: 181 YDG 183
Y G
Sbjct: 185 YVG 187
>gi|212211866|ref|YP_002302802.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii CbuG_Q212]
gi|212010276|gb|ACJ17657.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii CbuG_Q212]
Length = 189
Score = 270 bits (691), Expect = 9e-71, Method: Composition-based stats.
Identities = 79/183 (43%), Positives = 114/183 (62%), Gaps = 2/183 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M I V ++K + F D RG+F +T+ + G+ F+QDNHS S G +RGLH+Q
Sbjct: 8 MPIPEVILIKPKVFTDDRGFFIETFKQSDFRRHGINGEFLQDNHSLSMKKGVLRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVR + G++FD+AVD+RR SPT+G WVS E+ + N ++IP GFAHG + LE
Sbjct: 68 DPHAQGKLVRVVLGKVFDVAVDLRRESPTFGKWVSTELCSTNNHMLWIPPGFAHGILVLE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NT ++YK T Y E + + W D I+I WP+ + +L +SEKD FL + + +
Sbjct: 128 ENTHLLYKCTAEYVPESERYIRWDDPDINIKWPIKNNLL--LSEKDAAGVFLQRAEINAQ 185
Query: 181 YDG 183
Y G
Sbjct: 186 YHG 188
>gi|159904979|ref|YP_001548641.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanococcus maripaludis C6]
gi|159886472|gb|ABX01409.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanococcus maripaludis C6]
Length = 187
Score = 270 bits (691), Expect = 9e-71, Method: Composition-based stats.
Identities = 87/180 (48%), Positives = 116/180 (64%), Gaps = 4/180 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +++ + F D RG+F ++Y S + G+ + FVQDNHS S G +RGLHFQ+
Sbjct: 8 LEIPEVILIEPKVFPDERGFFLESYKSSDFFDAGITENFVQDNHSKS-KYGVLRGLHFQK 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KLVRCI G IFD+AVD+R+NSP YG WV +S N +YIP GFAHGF L
Sbjct: 67 NPKAQGKLVRCITGEIFDVAVDLRKNSPNYGKWVGEILSEENKKMLYIPKGFAHGFCVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ E+IYK T+ Y+ E D+G+ W D +I+I WP++D P +SEKD LP L D F
Sbjct: 127 SDAEIIYKCTEEYAPECDAGIKWNDNAIEIDWPVVD---PIISEKDSLLPNLLDSDINFV 183
>gi|191167713|ref|ZP_03029521.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli B7A]
gi|76366005|gb|ABA42230.1| RmlC [Escherichia coli]
gi|190902226|gb|EDV61967.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli B7A]
Length = 185
Score = 270 bits (691), Expect = 9e-71, Method: Composition-based stats.
Identities = 76/172 (44%), Positives = 110/172 (63%), Gaps = 2/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFMESFNQKIFEEAVGRKVEFVQDNHSKS-TKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
E +YK T++Y+ + +++ D +I I WP L + +S KD N
Sbjct: 126 ETAEFVYKTTNYYNPSFEKSISYSDPTIKIQWPNLQDMHFKLSNKDLNAKNF 177
>gi|26988513|ref|NP_743938.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida KT2440]
gi|24983280|gb|AAN67402.1|AE016367_2 dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida KT2440]
Length = 182
Score = 270 bits (691), Expect = 9e-71, Method: Composition-based stats.
Identities = 81/177 (45%), Positives = 116/177 (65%), Gaps = 4/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I V + + F D RG+F +++++++ E+ GLQ FVQDNHS S G +RGLH+Q
Sbjct: 6 LDIPEVVLFTPKVFGDERGFFYESFNARVFSEVTGLQPDFVQDNHSRSVK-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P+AQ KLVR + G +FD+AVDIRR+S T+G WV +SA N Q++IP GFAHGF+TL
Sbjct: 65 LAPHAQGKLVRVVQGEVFDVAVDIRRSSTTFGKWVGAVLSAENKNQLWIPPGFAHGFVTL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TDFYS + + +AW D ++ I WP+ +PS+S KDQ L +
Sbjct: 125 SETAEFLYKTTDFYSPQCERCIAWNDPAVGIEWPIDS--VPSLSGKDQLGVALADAE 179
>gi|163740057|ref|ZP_02147461.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Phaeobacter gallaeciensis
BS107]
gi|161386688|gb|EDQ11053.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Phaeobacter gallaeciensis
BS107]
Length = 184
Score = 269 bits (690), Expect = 9e-71, Method: Composition-based stats.
Identities = 91/182 (50%), Positives = 119/182 (65%), Gaps = 4/182 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V+IL +F D+RG+F ++++ + E GL FVQDNHS S + GT+RGLHFQ P
Sbjct: 7 DLPGVKILTPARFGDARGFFCESWNKARMAEAGLDFDFVQDNHSLSMEVGTLRGLHFQAP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQAKLVRC G +FD+AVDIR+ SPTYG W +E+SA NG Q+ IP GF HGF+T
Sbjct: 67 PHAQAKLVRCGQGALFDVAVDIRKGSPTYGRWTGVELSAANGRQLLIPAGFLHGFITCSP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
TEV+YK +Y+ + D GVAW S I W T P +SEKD P DSPF +
Sbjct: 127 GTEVLYKCDAYYAPDCDGGVAWD--SCGIDWGFDGT--PVLSEKDARAPRFEDFDSPFVW 182
Query: 182 DG 183
+G
Sbjct: 183 EG 184
>gi|325281645|ref|YP_004254187.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Odoribacter splanchnicus DSM
20712]
gi|324313454|gb|ADY34007.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Odoribacter splanchnicus DSM
20712]
Length = 190
Score = 269 bits (690), Expect = 9e-71, Method: Composition-based stats.
Identities = 78/180 (43%), Positives = 111/180 (61%), Gaps = 2/180 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F D RG+F +++S + + + VFVQDN S S G +RGLHFQ+PP
Sbjct: 8 IPGVVIVQPRIFGDERGYFFESFSQRDFERQVCKTVFVQDNESKSC-YGVVRGLHFQQPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLVR + GR+ D+AVDIR+ SPT+G VS+E++ N Q ++P GFAHGF L
Sbjct: 67 YAQSKLVRVVKGRVLDVAVDIRKGSPTFGKHVSVELTEENKRQFFVPRGFAHGFAVLSAE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK +FY+ E + +AW D + I W + +SEKD+ P L ++D F+Y
Sbjct: 127 AVFQYKCDNFYAPESEGALAWDDPDLGIDWRIP-AAKMILSEKDKRHPRLKEVDWLFDYK 185
>gi|209693793|ref|YP_002261721.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aliivibrio salmonicida
LFI1238]
gi|209693856|ref|YP_002261784.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aliivibrio salmonicida
LFI1238]
gi|208007744|emb|CAQ77862.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aliivibrio salmonicida
LFI1238]
gi|208007807|emb|CAQ77931.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aliivibrio salmonicida
LFI1238]
Length = 185
Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats.
Identities = 82/176 (46%), Positives = 112/176 (63%), Gaps = 6/176 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
NI V+I + F D RG+F +T+S K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 NIPDVKIFEPTVFGDERGFFMETWSQKKFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+ VDIR NSPT+G WV +SA N Q+++P GFAHGF
Sbjct: 66 TEN-TQGKLVRVVSGEVFDVVVDIRENSPTFGQWVGTYLSAENKHQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ E +YK TD+Y+ + + +AW DK+I I WP+ T P +SEKD+N L+Q+
Sbjct: 125 SEDAEFVYKCTDYYNPKSEISIAWDDKAIGIEWPI--TTPPQLSEKDKNAMILSQV 178
>gi|193222278|emb|CAL61333.2| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase) (dTDP-L-rhamnose synthetase)
[Herminiimonas arsenicoxydans]
Length = 181
Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats.
Identities = 74/177 (41%), Positives = 109/177 (61%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
M I V +++ + F D RG+F ++++ + G FVQDNHS S G +RGLH+Q
Sbjct: 6 MAIPDVLLIEPKVFGDDRGFFFESFNEQRFAAAVGKTVEFVQDNHSRSAR-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SPT+G WV +SA N Q++IP GFAHGF+
Sbjct: 65 IQQP-QGKLVRVVSGEVFDVAVDIRKSSPTFGLWVGALLSAENKRQMWIPEGFAHGFVVT 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+++ H+ +AW D +I I WP+ + P +S KDQN L +
Sbjct: 124 SDSAEFLYKTTDYWAPGHERCIAWNDPAIGIEWPITGS--PILSGKDQNGTSLADAE 178
>gi|58039513|ref|YP_191477.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gluconobacter oxydans 621H]
gi|58001927|gb|AAW60821.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gluconobacter oxydans 621H]
Length = 187
Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats.
Identities = 81/182 (44%), Positives = 110/182 (60%), Gaps = 1/182 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V ++ +F D+RG+FS+TY+ + + E G+ FVQDN S S G +RGLH Q
Sbjct: 6 LSIPEVILVTPPRFGDNRGFFSETYNVERMGEAGIDLPFVQDNQSLSRQKGVVRGLHCQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PY Q KLVR G I+D+AVD R SPTYG WV+ E+SA N Q++IP GF HGF+TLE
Sbjct: 66 APYEQGKLVRVTRGAIWDVAVDARTGSPTYGKWVAAELSAENWSQLWIPPGFLHGFVTLE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NTEV YK T YS + V W + I WP+ + +S+KD+ P + F
Sbjct: 126 ENTEVQYKCTSLYSKVSERAVIWNCPELKIDWPVSE-ADAILSDKDKVAPHFAEAKGWFS 184
Query: 181 YD 182
Y+
Sbjct: 185 YE 186
>gi|115345656|ref|YP_771837.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseobacter denitrificans OCh
114]
gi|115292977|gb|ABI93429.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseobacter denitrificans OCh
114]
Length = 198
Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats.
Identities = 90/183 (49%), Positives = 122/183 (66%), Gaps = 1/183 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V +L ++F D+RG+FS+++S++ + GL +VQDNHS S GT+RGLHFQ P
Sbjct: 16 KLAGVFVLTPKRFGDARGFFSESWSAREMAAQGLDFTWVQDNHSLSMQTGTVRGLHFQSP 75
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQAKLVRC G FD+AVDIRR SPTYG WV E+S NG Q+ +PTGF HGF T +
Sbjct: 76 PHAQAKLVRCGRGAFFDVAVDIRRGSPTYGQWVGAELSYENGKQMLVPTGFLHGFATRQP 135
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
TE+IYK +D+Y+ E D V + +I I W L D + P +S+KD L DSPF +
Sbjct: 136 ETEIIYKCSDYYAPECDGAVRFDCPTIGIDWGLGD-LEPVLSDKDAAAQGLADFDSPFVW 194
Query: 182 DGL 184
+G+
Sbjct: 195 EGV 197
>gi|239906435|ref|YP_002953176.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio magneticus
RS-1]
gi|239796301|dbj|BAH75290.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio magneticus
RS-1]
Length = 185
Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats.
Identities = 81/181 (44%), Positives = 112/181 (61%), Gaps = 3/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++K F D RG+F +TYS + + GL FVQDNH+ S G +RGLHFQ P
Sbjct: 7 GIPGLVVIKPNVFGDHRGFFLETYSREAYAKAGLDYDFVQDNHARSGPKGVLRGLHFQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P QAKLV G ++D+ VD+R SPTY W +E+SA+N L+ +P GFAHG++TL
Sbjct: 67 PATQAKLVWVTRGAVYDVVVDLRVGSPTYKKWYGIELSADNFLRFMVPRGFAHGYVTLTE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ E +YKV Y+ + D+G+AW D I I WP+ D P +S+KD P L + SPF Y
Sbjct: 127 DAEFMYKVDAPYAPDLDAGIAWDDPDIGINWPVTD---PVLSQKDAVQPRLAALGSPFVY 183
Query: 182 D 182
+
Sbjct: 184 E 184
>gi|225574462|ref|ZP_03783072.1| hypothetical protein RUMHYD_02537 [Blautia hydrogenotrophica DSM
10507]
gi|225038312|gb|EEG48558.1| hypothetical protein RUMHYD_02537 [Blautia hydrogenotrophica DSM
10507]
Length = 194
Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats.
Identities = 76/175 (43%), Positives = 101/175 (57%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I +R+++ F D RG+F +TY+ KE G+ FVQDN S S G +RGLHFQ
Sbjct: 21 QIEGLRVIEPTVFGDDRGYFMETYNYNDFKEAGIDVEFVQDNQS-SSRKGVLRGLHFQI- 78
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR ++G +FD+AVD+R S TYG W + +SA N Q +IP FAHGF+ L
Sbjct: 79 NYPQDKLVRVVSGEVFDVAVDLREGSATYGQWYGVVLSAENKKQFFIPKNFAHGFLVLSD 138
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E YK TDFY + G+ W D I I WP+ + + SEKDQ L +
Sbjct: 139 HAEFTYKCTDFYHPNDEGGLIWNDPDIGIQWPVPEGMELIFSEKDQKWGTLRDLK 193
>gi|260887357|ref|ZP_05898620.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas sputigena ATCC
35185]
gi|330838667|ref|YP_004413247.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas sputigena ATCC
35185]
gi|260862895|gb|EEX77395.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas sputigena ATCC
35185]
gi|329746431|gb|AEB99787.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas sputigena ATCC
35185]
Length = 190
Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats.
Identities = 85/181 (46%), Positives = 118/181 (65%), Gaps = 5/181 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V IL+ + F D+RGWF +++S K ++E GL FVQDN SFS + GT+RGLH+Q+ P
Sbjct: 8 LKGVFILEPQVFGDARGWFMESWSKKKMEEAGLFYDFVQDNQSFSAEKGTLRGLHYQKNP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQAKL+RC G I D+AVDIR+ SP Y WVS+ +SA N Q+ IP GFAHGF+TL +
Sbjct: 68 MAQAKLLRCTRGEILDVAVDIRKGSPQYAKWVSVRLSAENKRQLMIPRGFAHGFITLTDD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS--PFE 180
EV YK ++Y+ E D + W D +I + W + T+ +S KD+ P L + +S F
Sbjct: 128 VEVQYKADNYYAPECDGNILWSDPAIGVDWEIAPTV---LSAKDEAAPTLAERESQLNFV 184
Query: 181 Y 181
Y
Sbjct: 185 Y 185
>gi|266622170|ref|ZP_06115105.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium hathewayi DSM
13479]
gi|288866122|gb|EFC98420.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium hathewayi DSM
13479]
Length = 184
Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats.
Identities = 77/173 (44%), Positives = 104/173 (60%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + +++ F DSRG+F +TY+ KE GL VFVQDN S S G +RGLHFQ+
Sbjct: 10 DIKGLYVIEPTVFPDSRGYFMETYNQNDFKEAGLNMVFVQDNQSMSVK-GVLRGLHFQKQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R +S TYG W + +SA N Q YIP GFAHGF+ L
Sbjct: 69 -FPQGKLVRVVRGSVFDVAVDLRSDSETYGKWFGVLLSAENKKQFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E YK TDFY + G+ W D I I WP+ + + +S+KDQ +
Sbjct: 128 EAEFAYKCTDFYHPGDEGGILWSDPEIGIDWPIEEGMELIISDKDQKWSGIRD 180
>gi|69244638|ref|ZP_00602902.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium DO]
gi|257882964|ref|ZP_05662617.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
1,231,502]
gi|257885215|ref|ZP_05664868.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
1,231,501]
gi|257891454|ref|ZP_05671107.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
1,231,410]
gi|258614493|ref|ZP_05712263.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium DO]
gi|260560530|ref|ZP_05832704.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium C68]
gi|261206555|ref|ZP_05921255.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium TC 6]
gi|289565465|ref|ZP_06445914.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium D344SRF]
gi|293553222|ref|ZP_06673859.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium E1039]
gi|293560232|ref|ZP_06676732.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium E1162]
gi|293568262|ref|ZP_06679586.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium E1071]
gi|294614673|ref|ZP_06694575.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium E1636]
gi|294619030|ref|ZP_06698525.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium E1679]
gi|294620973|ref|ZP_06700172.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium U0317]
gi|314940009|ref|ZP_07847202.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
TX0133a04]
gi|314941887|ref|ZP_07848751.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium TX0133C]
gi|314950067|ref|ZP_07853354.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium TX0082]
gi|314952414|ref|ZP_07855420.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium TX0133A]
gi|314993217|ref|ZP_07858597.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium TX0133B]
gi|314997807|ref|ZP_07862719.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
TX0133a01]
gi|68196229|gb|EAN10658.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium DO]
gi|257818622|gb|EEV45950.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
1,231,502]
gi|257821067|gb|EEV48201.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
1,231,501]
gi|257827814|gb|EEV54440.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
1,231,410]
gi|260073532|gb|EEW61860.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium C68]
gi|260079265|gb|EEW66956.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium TC 6]
gi|289162794|gb|EFD10645.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium D344SRF]
gi|291588974|gb|EFF20798.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium E1071]
gi|291592411|gb|EFF24018.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium E1636]
gi|291594691|gb|EFF26073.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium E1679]
gi|291599431|gb|EFF30449.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium U0317]
gi|291602632|gb|EFF32847.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium E1039]
gi|291605804|gb|EFF35238.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium E1162]
gi|313588179|gb|EFR67024.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
TX0133a01]
gi|313592298|gb|EFR71143.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium TX0133B]
gi|313595457|gb|EFR74302.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium TX0133A]
gi|313599312|gb|EFR78157.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium TX0133C]
gi|313640742|gb|EFS05322.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
TX0133a04]
gi|313643602|gb|EFS08182.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium TX0082]
Length = 190
Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats.
Identities = 77/182 (42%), Positives = 112/182 (61%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ F D RG+F+++YS E GL+ FVQDNHS S + G +RGLHFQ+
Sbjct: 7 KLTDVKIVEMDVFGDHRGFFTESYSKAKFAEHGLKYDFVQDNHSLSAEAGVLRGLHFQKG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ VDIR+ SPTYG W +S +N Q+ +P G+AHGF+TL
Sbjct: 67 EAAQTKLIRVVTGAVLDVVVDIRKGSPTYGQWDGFILSEHNHRQLLVPKGYAHGFVTLTP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS--PF 179
N +YK ++Y+ E D G+A+ D + I WP+ D +SEKD P L + ++ PF
Sbjct: 127 NVNFLYKCDNYYNAEADGGIAFDDPDLAIDWPI-DPSRAIMSEKDHRHPTLKEFEAENPF 185
Query: 180 EY 181
Y
Sbjct: 186 VY 187
>gi|270339785|ref|ZP_06006012.2| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella bergensis DSM
17361]
gi|270333816|gb|EFA44602.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella bergensis DSM
17361]
Length = 211
Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats.
Identities = 71/180 (39%), Positives = 107/180 (59%), Gaps = 2/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V I++ + F+D RG+F ++++ K E FVQDN S S G +RGLHFQR
Sbjct: 29 SIEGVVIIEPKIFKDDRGYFYESWNQKEFDEKVRPIRFVQDNQSKSS-YGVLRGLHFQRG 87
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
++Q+KLVR ++G + D+AVDIR+ SPT+G V++E++ +N Q +IP GFAHGF L
Sbjct: 88 THSQSKLVRVVSGSVLDVAVDIRKGSPTFGQHVAVELTGDNHRQFFIPRGFAHGFSVLSE 147
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK + Y E + +AW D ++ I W + + +SEKD P L + F+Y
Sbjct: 148 TAIFQYKCDNLYCKESEGAIAWNDPALGIDWRIPADKV-ILSEKDACHPLLEEATDLFDY 206
>gi|170720580|ref|YP_001748268.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida W619]
gi|169758583|gb|ACA71899.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida W619]
Length = 182
Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats.
Identities = 86/177 (48%), Positives = 116/177 (65%), Gaps = 4/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + F D RG+F +++++ + KE+ GLQ FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVFLFTPKVFGDERGFFFESFNANVFKEVTGLQPDFVQDNHSRSVK-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
PP+AQ KLVR + G +FD+AVDIRR+SPT+G WV +SA N Q++IP GFAHGF+TL
Sbjct: 65 LPPHAQGKLVRVVQGEVFDVAVDIRRSSPTFGQWVGAVLSAENKNQLWIPPGFAHGFVTL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TDFYS + +AW D I I WP+ +PS+S KDQ L+ D
Sbjct: 125 SDTAEFLYKTTDFYSPSSERCLAWNDPEIGIEWPI--DFVPSLSGKDQLGLALSDSD 179
>gi|89056335|ref|YP_511786.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Jannaschia sp. CCS1]
gi|88865884|gb|ABD56761.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Jannaschia sp. CCS1]
Length = 215
Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats.
Identities = 87/184 (47%), Positives = 119/184 (64%), Gaps = 2/184 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ + ++ +F D+RG+F++TYS+ L + G+ FVQDNHS S D GT+RGLHFQ P
Sbjct: 34 GLEGLVVITPPRFGDARGFFAETYSAAKLADHGIMTQFVQDNHSLSEDVGTVRGLHFQGP 93
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVRC G +FD+ VDIR+ SPT+G W +E++ NG Q+ +P GFAHGF+T
Sbjct: 94 PHAQDKLVRCGRGCLFDVVVDIRKGSPTFGQWFGIELTFENGKQLLVPAGFAHGFVTRAP 153
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
TE+IYK +DFY+ E + + W D I I W L D P +S KD L +DSPF Y
Sbjct: 154 GTEIIYKCSDFYAPETEGAIIWNDPKIGIDWRLEDD--PVLSGKDAVAGTLADLDSPFIY 211
Query: 182 DGLP 185
+ P
Sbjct: 212 EAKP 215
>gi|153010045|ref|YP_001371260.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ochrobactrum anthropi ATCC
49188]
gi|151561933|gb|ABS15431.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ochrobactrum anthropi ATCC
49188]
Length = 183
Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats.
Identities = 90/176 (51%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ ++ V + RKF D RG+FS+TY++K E G+ FVQDNHS+S G +RGLH+Q
Sbjct: 6 LGLDGVFEVSPRKFGDDRGFFSETYNAKSFAEAGIDLTFVQDNHSYSAAKGVVRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVR G I D+AVDIR++SPT+G WV+LE+SA QI +P GFAHGFMTL
Sbjct: 66 LPFAQDKLVRVTRGAILDVAVDIRKSSPTFGKWVALEVSAEKWNQILVPKGFAHGFMTLV 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
NTEVIYKVTD+YS EHD + + D +I I WP+ + + +S+KD P L +
Sbjct: 126 ENTEVIYKVTDYYSPEHDRSIRFDDSAIGIDWPIASSGV-QLSDKDSKAPLLADAE 180
>gi|294635550|ref|ZP_06714030.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Edwardsiella tarda ATCC
23685]
gi|291091119|gb|EFE23680.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Edwardsiella tarda ATCC
23685]
Length = 176
Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats.
Identities = 83/173 (47%), Positives = 116/173 (67%), Gaps = 4/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I + + F D RG+F +++S K+ E G Q FVQDNHS S G +RGLHFQ
Sbjct: 7 DIPDVLIFEPKVFGDDRGFFFESFSMKVFNEAVGRQVEFVQDNHSKSSK-GVLRGLHFQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC G +FD+AVDIR +SPTYG W+ + +S N Q++IP GFAHGF+TL
Sbjct: 66 SPYAQGKLVRCTVGEVFDVAVDIRESSPTYGKWIGVNLSGENKRQLWIPEGFAHGFLTLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
E +YK T++Y +++SG+ W D ++ I+WP ++ + +S KD+NLP L
Sbjct: 126 DTAEFLYKATNYYRPDYESGIIWNDPTLSISWPEINGM--IISTKDKNLPRLK 176
>gi|317048788|ref|YP_004116436.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pantoea sp. At-9b]
gi|316950405|gb|ADU69880.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pantoea sp. At-9b]
Length = 182
Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats.
Identities = 74/174 (42%), Positives = 108/174 (62%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+I++ F D RG+F +T+ K +EL FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVKIIEPAVFGDERGFFMETWQQKKFEELVSPRTFVQDNHSKSSK-GILRGLHYQTV 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR +AG +FD+AVD+RR+SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 N-TQGKLVRVVAGEVFDVAVDMRRSSPTFGKWVGVLLSAENKRQLWVPEGFAHGFYVTSD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ E +YK TD+Y+ +H+ + W D+ ++I WP+ PS+S KD ++
Sbjct: 125 SAEFVYKCTDYYNPQHEHSLLWNDRELNINWPINSDNPPSLSAKDAVGTPFSEA 178
>gi|312136509|ref|YP_004003846.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Methanothermus fervidus DSM
2088]
gi|311224228|gb|ADP77084.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanothermus fervidus DSM
2088]
Length = 185
Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats.
Identities = 79/173 (45%), Positives = 107/173 (61%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + ++K + FED RG+F +TY++K K+ + FVQDN SFS G +RGLHFQ
Sbjct: 10 SIPGLYVIKPKVFEDERGYFMETYNAKEFKKANINAKFVQDNQSFS-KKGVLRGLHFQYR 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR I G+IFD+AVD+R+NS TYG W S+ +S N YIP GFAHGF+ L
Sbjct: 69 -RQQGKLVRVIKGKIFDVAVDLRKNSETYGEWESVILSGKNKKMFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
V YK TDFY E++ G+ W D I I WP+ + +S+KD+ L +
Sbjct: 128 TAIVTYKCTDFYYPEYEGGIIWNDPDIGIEWPIDEVDKLIISDKDKKWKPLKE 180
>gi|297569754|ref|YP_003691098.1| Sigma 54 interacting domain protein [Desulfurivibrio alkaliphilus
AHT2]
gi|296925669|gb|ADH86479.1| Sigma 54 interacting domain protein [Desulfurivibrio alkaliphilus
AHT2]
Length = 181
Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats.
Identities = 78/177 (44%), Positives = 114/177 (64%), Gaps = 4/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +L+ + F D RG+F ++++ ++ ++ G+ FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPEVMLLEPKVFGDERGFFYESFNRRVFEQATGVSGEFVQDNHSRS-RRGVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
PP AQ KLVR + G +FD+AVD+RR SPT G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 65 LPPKAQGKLVRVVQGEVFDVAVDLRRASPTCGQWVGVHLSAANKHQLWIPPGFAHGFVTL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ E++ + W D + I+WPL D P ++ KDQ Q +
Sbjct: 125 SETAEFLYKTTDYYAPEYERCIIWNDPDLAISWPLPDP--PQLAAKDQQGQPFRQAE 179
>gi|227550496|ref|ZP_03980545.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium TX1330]
gi|257888523|ref|ZP_05668176.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
1,141,733]
gi|257897102|ref|ZP_05676755.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium Com12]
gi|257899041|ref|ZP_05678694.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium Com15]
gi|293377325|ref|ZP_06623529.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium PC4.1]
gi|293572519|ref|ZP_06683498.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium E980]
gi|227180397|gb|EEI61369.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium TX1330]
gi|257824577|gb|EEV51509.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
1,141,733]
gi|257833667|gb|EEV60088.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium Com12]
gi|257836953|gb|EEV62027.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium Com15]
gi|291607436|gb|EFF36779.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium E980]
gi|292644017|gb|EFF62123.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium PC4.1]
Length = 190
Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats.
Identities = 77/182 (42%), Positives = 111/182 (60%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ F D RG+F+++YS E GL FVQDNHS S + G +RGLHFQ+
Sbjct: 7 KLTDVKIVEMDVFGDHRGFFTESYSKAKFAEHGLDYDFVQDNHSLSAEAGVLRGLHFQKG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ VDIR+ SPTYG W +S +N Q+ +P G+AHGF+TL
Sbjct: 67 EAAQTKLIRVVTGAVLDVVVDIRKGSPTYGQWDGFILSEHNHRQLLVPKGYAHGFVTLTP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS--PF 179
N +YK ++Y+ E D G+A+ D + I WP+ D +SEKD P L + ++ PF
Sbjct: 127 NVNFLYKCDNYYNAEADGGIAFDDPDLAIDWPI-DPSRAIMSEKDHRHPTLKEFEAENPF 185
Query: 180 EY 181
Y
Sbjct: 186 VY 187
>gi|307340771|gb|ADN43834.1| RmlC [Escherichia coli]
Length = 182
Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats.
Identities = 78/168 (46%), Positives = 116/168 (69%), Gaps = 4/168 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKSCK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK T++Y+ +H+ + W+D ++I+WP+ + P +SEKD+N
Sbjct: 126 ETAEFVYKTTNYYAAKHERCIQWKDGMLNISWPIGNA--PILSEKDRN 171
>gi|312898304|ref|ZP_07757694.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Megasphaera micronuciformis
F0359]
gi|310620223|gb|EFQ03793.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Megasphaera micronuciformis
F0359]
Length = 192
Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats.
Identities = 72/180 (40%), Positives = 113/180 (62%), Gaps = 3/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ + F D RG+F ++++ + ++ GL FVQDNHS S GT+RG+HFQ
Sbjct: 9 GIPGLVIIEPQVFGDHRGFFMESWNKRTMETAGLFYNFVQDNHSSSTVKGTLRGIHFQYG 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQAKLVRC+ G + D+AVD+R++SPTY W +E+S N Q IP GF HGF+TL
Sbjct: 69 DKAQAKLVRCVRGAVLDVAVDLRKDSPTYKQWYGIELSEENQKQFLIPRGFGHGFVTLTD 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ +YK ++Y+ + D G+ W D ++ I W + + P +SEKD PF +++++ +
Sbjct: 129 HVGFMYKADNYYAPDADGGIRWNDPTLAINWGIEN---PILSEKDNKSPFFDELENKISF 185
>gi|9957818|gb|AAG09501.1|AF279615_4 dTDP-6-deoxy-D-glucose-3,5-epimerase [Salmonella enterica]
Length = 179
Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats.
Identities = 80/172 (46%), Positives = 114/172 (66%), Gaps = 4/172 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFSDERGFFMESFNQKVFEEAVGRKIEFVQDNHSKS-TKGVLRGLHYQV 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRCIAG +FD+AVDIR++S T+G WV + IS+ N ++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCIAGEVFDVAVDIRKDSETFGKWVGVNISSENKRPLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ + +YK +++YS H+ G+ W D +I+I WP+ I +SEKD LP
Sbjct: 126 DSADFLYKTSNYYSPIHERGIVWNDPTININWPI--NIDKILSEKDTILPKF 175
>gi|258540230|ref|YP_003174729.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus Lc
705]
gi|56684475|gb|AAW22444.1| RmlC [Lactobacillus rhamnosus]
gi|257151906|emb|CAR90878.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus Lc
705]
Length = 190
Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats.
Identities = 78/180 (43%), Positives = 114/180 (63%), Gaps = 1/180 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V++++T F D+RG+F++TY+ + E G+++ F QDN S S + G +RG+H+Q
Sbjct: 9 KLKDVKLVETDVFGDNRGFFTETYTREKFVEAGIKNDFNQDNQSLSAEAGVLRGMHYQMA 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVR + G + D+ VDIR+ SPTYG W +S N Q+ +P GFAHGF+TL
Sbjct: 69 PYAQTKLVRVVTGVVEDVLVDIRKGSPTYGHWEGYILSQYNHRQLLVPKGFAHGFITLTP 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N +YKV +Y+ E D G+A+ D I I WP+ T +SEKDQ+ P L ++ F Y
Sbjct: 129 NVNFVYKVEGYYAPEADRGIAFDDPDIGIDWPMS-TAHLIMSEKDQHHPQLKDAENNFIY 187
>gi|82777434|ref|YP_403783.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella dysenteriae Sd197]
gi|81241582|gb|ABB62292.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella dysenteriae Sd197]
Length = 185
Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats.
Identities = 75/172 (43%), Positives = 110/172 (63%), Gaps = 2/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKS-TKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G W+ + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWIGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
E +YK T++Y+ + +++ D +I I WP L + +S KD N
Sbjct: 126 ETAEFVYKTTNYYNPSFEKSISYSDPTIKIQWPNLQDMHFKLSNKDLNAKNF 177
>gi|197106802|ref|YP_002132179.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Phenylobacterium zucineum
HLK1]
gi|196480222|gb|ACG79750.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Phenylobacterium zucineum
HLK1]
Length = 184
Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats.
Identities = 77/175 (44%), Positives = 113/175 (64%), Gaps = 2/175 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ ++ V ++ ++ D+RGWFS+T+S + + E G++ FVQDN +F+ GT+RGLHFQ
Sbjct: 7 LALSDVLLITPKRHGDARGWFSETWSRRAMSEAGVEADFVQDNQAFNARKGTLRGLHFQA 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ Q KLVR + G I+D+AVDIR S TYG WV ++A G Q+++P GFAHG+ TL
Sbjct: 67 APHPQGKLVRVLQGAIYDVAVDIRPGSATYGRWVGATLTAEGGEQLWVPRGFAHGYCTLT 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + YKV Y+ + + GVAW D + I WPL P +SEKD+ LP L +
Sbjct: 127 DDAMLFYKVDGLYAPQTEGGVAWDDPDLAIDWPLESE--PVLSEKDKTLPRLKDL 179
>gi|325958659|ref|YP_004290125.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanobacterium sp. AL-21]
gi|325330091|gb|ADZ09153.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanobacterium sp. AL-21]
Length = 185
Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats.
Identities = 78/173 (45%), Positives = 102/173 (58%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I+ V I++ F D RG+F +TY KE GL FVQDN S S G +RGLHFQ
Sbjct: 10 SIDDVYIIEPTVFGDDRGYFMETYHQGEFKEAGLDMEFVQDNQSRSVR-GVLRGLHFQYT 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR I G +FD+AVD+R NSPTYG + S+ +S N Q Y+P GFAHGF+ L
Sbjct: 69 QP-QGKLVRVIKGTVFDVAVDLRENSPTYGQYESVVLSEENKKQFYVPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E YK T FY+ + + G+ W D I+I WPL + +S+KD L +
Sbjct: 128 VAEFTYKCTAFYNADDEGGIMWNDPDINIEWPLKEAGNVVLSDKDSEWKPLKE 180
>gi|311278965|ref|YP_003941196.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterobacter cloacae SCF1]
gi|308748160|gb|ADO47912.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterobacter cloacae SCF1]
Length = 184
Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats.
Identities = 80/175 (45%), Positives = 109/175 (62%), Gaps = 5/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL---GLQDVFVQDNHSFSFDCGTIRGLHF 58
+ V+I++ F D RG+F +T++ K +EL G+ FVQDNHS S G +RGLHF
Sbjct: 7 QLEEVKIIEPTVFGDDRGFFMETWNQKKFEELVTNGVSTKFVQDNHSKS-KKGILRGLHF 65
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
Q Q KLVR G +FD+AVD+R+NSPT G WV +E+SA N Q+++P GFAHGF
Sbjct: 66 QSEN-TQGKLVRVGVGAVFDVAVDVRKNSPTLGKWVGVELSAENKRQLWVPEGFAHGFYV 124
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L E IYK TDFY+ + + + W D +I + WPL +T+ +SEKD N L
Sbjct: 125 LSDTAEFIYKCTDFYNPKAEHSIIWNDPAIGVDWPLDETVPLILSEKDMNGVTLK 179
>gi|153826358|ref|ZP_01979025.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae MZO-2]
gi|149739927|gb|EDM54114.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae MZO-2]
Length = 181
Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats.
Identities = 74/175 (42%), Positives = 111/175 (63%), Gaps = 6/175 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPTVFGDERGFFMETWNQKRFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 TEN-TQGKLVRVVSGEVFDVAVDIRKDSPTFGKWVGVYLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK TD+Y+ + + + W D SI+I WP + +L +S+KD+ ++
Sbjct: 125 SDEAEFVYKCTDYYNPKAEHSLLWNDPSINIEWPRSEGLL--LSDKDKEGLRFSE 177
>gi|121533495|ref|ZP_01665323.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermosinus carboxydivorans
Nor1]
gi|121308054|gb|EAX48968.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermosinus carboxydivorans
Nor1]
Length = 186
Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats.
Identities = 78/176 (44%), Positives = 110/176 (62%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V +++ + D+RG+F +T+++ +E GL + FVQDN SFS G +RGLHFQ
Sbjct: 7 KLSGVLLIEPDVYGDNRGYFLETWNAARYREYGLPEKFVQDNLSFS-RRGVLRGLHFQN- 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLV I G +FD+AVDIR SPT+G WV + +S++N Q+YIP GFAHGF L
Sbjct: 65 PNPQGKLVYVIQGEVFDVAVDIRPGSPTFGQWVGVTLSSDNKRQLYIPEGFAHGFCVLSD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
YK TDFY+ + + G+ W D I I WP+ + P +S+KD+ P L I S
Sbjct: 125 TALFAYKCTDFYNPQAEGGIIWNDFDIGIAWPVSE---PIISDKDKANPRLRDIPS 177
>gi|154505986|ref|ZP_02042724.1| hypothetical protein RUMGNA_03528 [Ruminococcus gnavus ATCC 29149]
gi|153793485|gb|EDN75905.1| hypothetical protein RUMGNA_03528 [Ruminococcus gnavus ATCC 29149]
Length = 183
Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats.
Identities = 75/175 (42%), Positives = 106/175 (60%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I ++++ F D RG+F +TY+ KE G+ FVQDN S S G +RGLHFQ
Sbjct: 10 EIEGLKVITPAVFGDERGYFMETYNYNDYKEAGIDMEFVQDNQS-SSKKGVLRGLHFQI- 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR ++G +FD+AVD+R+ S TYG W + +SA N Q +IP FAHGF+ L
Sbjct: 68 NYPQDKLVRVVSGEVFDVAVDLRKGSKTYGQWYGVVLSAENKKQFFIPKDFAHGFVVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E YK TDFY + G+AW D I I WP+ + + ++SEKDQ + +++
Sbjct: 128 SAEFAYKCTDFYHPNDEGGLAWNDPDIGIEWPIPEDMELTISEKDQKWGGIKELN 182
>gi|9957823|gb|AAG09505.1|AF279616_4 dTDP-6-deoxy-D-glucose-3,5-epimerase [Salmonella enterica]
Length = 177
Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats.
Identities = 84/172 (48%), Positives = 115/172 (66%), Gaps = 4/172 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EVPDVLIFEPKVFSDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKS-TKGVLRGLHYQV 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRCIAG +FD+AVDIR++S T+G WV + IS+ N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCIAGEVFDVAVDIRKDSETFGKWVGVNISSENKRQLWIPEGFAHGFLVLG 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
E +YK ++FY+ + D GVAW D I I WPL++ P +S KD PFL
Sbjct: 126 EEAEFVYKTSNFYNPDSDRGVAWNDPDIGINWPLINN--PLLSNKDSKQPFL 175
>gi|24113423|ref|NP_707933.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Shigella flexneri 2a str.
301]
gi|30063489|ref|NP_837660.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Shigella flexneri 2a str.
2457T]
gi|110806007|ref|YP_689527.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Shigella flexneri 5 str.
8401]
gi|331658118|ref|ZP_08359080.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli TA206]
gi|585832|sp|P37780|RMLC_SHIFL RecName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; AltName:
Full=Thymidine diphospho-4-keto-rhamnose 3,5-epimerase;
AltName: Full=dTDP-4-keto-6-deoxyglucose 3,5-epimerase;
AltName: Full=dTDP-6-deoxy-D-xylo-4-hexulose
3,5-epimerase; AltName: Full=dTDP-L-rhamnose synthase
gi|294899|gb|AAA53682.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Shigella flexneri]
gi|454901|emb|CAA50770.1| rfbD [Shigella flexneri]
gi|24052446|gb|AAN43640.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Shigella flexneri 2a str.
301]
gi|30041742|gb|AAP17469.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Shigella flexneri 2a str.
2457T]
gi|110615555|gb|ABF04222.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella flexneri 5 str.
8401]
gi|187880659|gb|ACD37161.1| RmlC [Escherichia coli]
gi|187880668|gb|ACD37169.1| RmlC [Escherichia coli]
gi|281601491|gb|ADA74475.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella flexneri 2002017]
gi|313649925|gb|EFS14345.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella flexneri 2a str.
2457T]
gi|331056366|gb|EGI28375.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli TA206]
gi|332756671|gb|EGJ87020.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella flexneri K-671]
gi|332756809|gb|EGJ87154.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella flexneri 2747-71]
gi|332766383|gb|EGJ96592.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella flexneri 2930-71]
gi|333002420|gb|EGK21982.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella flexneri K-218]
gi|333002550|gb|EGK22111.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella flexneri VA-6]
gi|333003378|gb|EGK22922.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella flexneri K-272]
gi|333017072|gb|EGK36393.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella flexneri K-304]
gi|333017208|gb|EGK36528.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella flexneri K-227]
Length = 181
Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats.
Identities = 82/176 (46%), Positives = 113/176 (64%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKS-TKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFCVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK +FYS + G+ W DKSI+I WP+ + P +S+KD N D
Sbjct: 126 DEAEFVYKTNNFYSKMQERGILWSDKSINIEWPVQN---PLLSDKDINGQKFVDAD 178
>gi|150004940|ref|YP_001299684.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides vulgatus ATCC
8482]
gi|294775787|ref|ZP_06741289.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides vulgatus PC510]
gi|149933364|gb|ABR40062.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides vulgatus ATCC
8482]
gi|294450373|gb|EFG18871.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides vulgatus PC510]
Length = 190
Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats.
Identities = 79/180 (43%), Positives = 111/180 (61%), Gaps = 2/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +++ R F+D RG+F +++S + E + FVQDN S S G +RGLHFQ+
Sbjct: 7 GIEGVVVIEPRIFKDERGYFFESFSQREFNEKVMPVNFVQDNESMSS-YGVMRGLHFQQM 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY Q+KLVRC+ G + D+AVDIR+ SPTYG V++E++ N LQ +IP GFAHGF L
Sbjct: 66 PYTQSKLVRCVKGAVLDVAVDIRKGSPTYGQHVAVELTEENHLQFFIPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +FY+ + D G+ +D+S+ I W + +SEKD P L DSPF+Y
Sbjct: 126 TAVFQYKCDNFYAPQADGGIQLRDESLGIDWKIP-VAEAILSEKDLKHPLLKDYDSPFDY 184
>gi|29725992|gb|AAO88924.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]
gi|115279712|gb|ABI85328.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]
Length = 181
Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats.
Identities = 74/175 (42%), Positives = 111/175 (63%), Gaps = 6/175 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPTVFGDERGFFMETWNQKRFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 TEN-TQGKLVRVVSGEVFDVAVDIRKDSPTFGKWVGVYLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK TD+Y+ + + + W D SI+I WP + +L +S+KD+ ++
Sbjct: 125 SDEAEFVYKCTDYYNPKAEHSLLWNDPSINIEWPSSEGLL--LSDKDKEGLRFSE 177
>gi|332885219|gb|EGK05470.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dysgonomonas mossii DSM
22836]
Length = 197
Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats.
Identities = 77/181 (42%), Positives = 106/181 (58%), Gaps = 2/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ + F D RG+F ++Y+ FVQDN S S G +RGLHFQ+P
Sbjct: 8 QIKDVVIIEPKIFGDDRGYFFESYNQAEFNTSIRTVHFVQDNESKSC-YGVLRGLHFQKP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR I G + D+AVDIRRNSPT+G V++ +S N Q++IP GFAHGF+ L
Sbjct: 67 PFAQSKLVRVIEGEVLDVAVDIRRNSPTFGKHVAVILSGENHRQLFIPRGFAHGFVVLSN 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK + YS + + +AW D I I W ++ +SEKD PFL F+Y
Sbjct: 127 EAVFQYKCDNSYSPQSEGAIAWNDPEIGIDW-IVAPEDIILSEKDTRHPFLKDATQLFDY 185
Query: 182 D 182
+
Sbjct: 186 N 186
>gi|257792905|gb|ACV67282.1| RmlC [Escherichia coli]
Length = 181
Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats.
Identities = 83/174 (47%), Positives = 115/174 (66%), Gaps = 4/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V IL+ + F D RG+F ++++ K+ E G + FVQDNHS S G +RGLH+Q+
Sbjct: 7 EIPDVLILEPKVFGDERGFFMESFNQKVFDEAVGRKVEFVQDNHSKSIK-GVLRGLHYQQ 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIRR+S T+G WV + +SA N Q++IP GFAHGF L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRRDSETFGKWVGVNLSAENKKQLWIPEGFAHGFYVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T++Y+ D G+ W DK+I+I WP++ IL +SEKD N +
Sbjct: 126 DTAEFVYKATNYYNFLSDRGIIWNDKNININWPIVGDIL--LSEKDMNHRTFTE 177
>gi|258517208|ref|YP_003193430.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfotomaculum acetoxidans
DSM 771]
gi|257780913|gb|ACV64807.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfotomaculum acetoxidans
DSM 771]
Length = 182
Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats.
Identities = 80/173 (46%), Positives = 99/173 (57%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ F D RG+F +TY K E GL FVQDN S S G +RGLHFQR
Sbjct: 10 GIQGLYIIEPMIFGDHRGYFMETYHLKEFSEAGLNMAFVQDNQSKS-KKGVLRGLHFQRK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR I G +FD+AVD+R +S TYG W + +S N Q YIP FAHGF+ L
Sbjct: 69 -YPQGKLVRVIKGEVFDVAVDLRMDSKTYGKWFGVILSEENKKQFYIPESFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK TD+Y E + G+ W D +I I WPL +SEKDQ L
Sbjct: 128 EAEFVYKCTDYYHPEDEDGILWNDPAIGIAWPLDRIDDIILSEKDQKWKGLKD 180
>gi|85710316|ref|ZP_01041381.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Erythrobacter sp. NAP1]
gi|85689026|gb|EAQ29030.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Erythrobacter sp. NAP1]
Length = 181
Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats.
Identities = 73/176 (41%), Positives = 113/176 (64%), Gaps = 3/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ I++ + F D RG+F ++++++ + GL FVQDNHS S G +RG+HFQ
Sbjct: 7 EIDGPLIIEPKVFGDERGFFMESWNAQAFADAGLDIAFVQDNHSRS-QKGVLRGMHFQN- 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLVR ++G +FD+AVD+RR+SPT+G WV +E+SA N ++P GFAHGF+TLE
Sbjct: 65 PGPQGKLVRVVSGAVFDVAVDLRRSSPTFGKWVGVELSAQNKRMFWVPQGFAHGFLTLED 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
NT+ +YK Y+ + + +AW D + I WP D + +S KD+ L ++++
Sbjct: 125 NTDFLYKCDAPYAPQTEHSLAWDDPEVGIQWP-TDGLEVQLSSKDREGKSLGEVEA 179
>gi|134094385|ref|YP_001099460.1| dTDP-4,deoxyrhamnose 3,5 epimerase [Herminiimonas arsenicoxydans]
Length = 176
Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats.
Identities = 74/177 (41%), Positives = 109/177 (61%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
M I V +++ + F D RG+F ++++ + G FVQDNHS S G +RGLH+Q
Sbjct: 1 MAIPDVLLIEPKVFGDDRGFFFESFNEQRFAAAVGKTVEFVQDNHSRSAR-GVLRGLHYQ 59
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SPT+G WV +SA N Q++IP GFAHGF+
Sbjct: 60 IQQP-QGKLVRVVSGEVFDVAVDIRKSSPTFGLWVGALLSAENKRQMWIPEGFAHGFVVT 118
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+++ H+ +AW D +I I WP+ + P +S KDQN L +
Sbjct: 119 SDSAEFLYKTTDYWAPGHERCIAWNDPAIGIEWPITGS--PILSGKDQNGTSLADAE 173
>gi|300853735|ref|YP_003778719.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium ljungdahlii DSM
13528]
gi|300433850|gb|ADK13617.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium ljungdahlii DSM
13528]
Length = 185
Score = 268 bits (687), Expect = 2e-70, Method: Composition-based stats.
Identities = 81/175 (46%), Positives = 105/175 (60%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +++T F D+RG+F +TY+ K GL VFVQDN S S G +RGLHFQ+
Sbjct: 13 EIKGVYVIETGIFGDNRGYFMETYNYNEFKASGLDMVFVQDNQSKS-KKGVLRGLHFQK- 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+Q KLVR + G++FD+AVD+R S TYG WV + +S N Q YIP GFAHGF+ L
Sbjct: 71 NYSQGKLVRVVKGKVFDVAVDLRDGSSTYGKWVGVTLSEENKKQFYIPKGFAHGFLVLSD 130
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E YK T+FY E + G+ W D I+I WPL SEKD+ P L +
Sbjct: 131 EAEFCYKCTEFYHPEDEGGIIWNDTDINIKWPLEGIDNIIFSEKDKLWPTLKEYK 185
>gi|325970228|ref|YP_004246419.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Spirochaeta sp. Buddy]
gi|324025466|gb|ADY12225.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Spirochaeta sp. Buddy]
Length = 183
Score = 268 bits (687), Expect = 2e-70, Method: Composition-based stats.
Identities = 78/171 (45%), Positives = 102/171 (59%), Gaps = 3/171 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V I++ R F D RG+F +TY+ + G+ FVQDN S S G +RGLHFQ+
Sbjct: 10 DIEGVLIIEPRVFGDERGYFMETYNKADFYKAGITCEFVQDNQSKS-RKGVLRGLHFQKQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y QAKLVR G ++D+AVD+R+ SPTYG +V +SA Q +IP GFAHGF+ L
Sbjct: 69 -YPQAKLVRVTKGEVYDVAVDLRKESPTYGKYVGATLSAELKNQFFIPRGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
E YK +FY E + G+ W D SI I WP I +SEKD+ L L
Sbjct: 128 EAEFTYKCDEFYHPEDEGGIRWDDPSIGIQWP-EIGIEYCLSEKDKALSTL 177
>gi|302388126|ref|YP_003823948.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium saccharolyticum
WM1]
gi|302198754|gb|ADL06325.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium saccharolyticum
WM1]
Length = 184
Score = 268 bits (687), Expect = 2e-70, Method: Composition-based stats.
Identities = 78/173 (45%), Positives = 107/173 (61%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + +++ F DSRG+F +TY+ +E GL VFVQDN S S G +RGLHFQ+
Sbjct: 10 GIKGLFVIEPAVFHDSRGYFMETYNQNDFQEAGLDMVFVQDNQSMSAK-GVLRGLHFQKQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G++FD+AVD+R +S TYG W +E+SA N Q YIP GFAHGF+ L
Sbjct: 69 -FPQGKLVRVVRGKVFDVAVDLRSSSETYGKWFGVELSAENKKQFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E YK TDFY + G+ W D SI I WP+ + + +S+KDQ + +
Sbjct: 128 EAEFAYKCTDFYHPGDEGGILWSDPSIGIDWPIEEGMELIISDKDQKWGGIRE 180
>gi|260856021|ref|YP_003229912.1| putative dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli
O26:H11 str. 11368]
gi|24417733|gb|AAN60457.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli]
gi|56800699|gb|AAW31113.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli]
gi|77737732|gb|ABB01684.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli]
gi|257754670|dbj|BAI26172.1| predicted dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli
O26:H11 str. 11368]
Length = 180
Score = 268 bits (687), Expect = 2e-70, Method: Composition-based stats.
Identities = 76/168 (45%), Positives = 107/168 (63%), Gaps = 5/168 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKSSK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK T++Y E + + W D + I WP +SEKD+
Sbjct: 126 EIAEFVYKTTNYYHPESEGCIKWDDSFLMIDWPNKPIA---ISEKDKK 170
>gi|153206209|ref|ZP_01945472.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii 'MSU Goat
Q177']
gi|212217811|ref|YP_002304598.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii CbuK_Q154]
gi|120577339|gb|EAX33963.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii 'MSU Goat
Q177']
gi|212012073|gb|ACJ19453.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coxiella burnetii CbuK_Q154]
Length = 189
Score = 268 bits (687), Expect = 2e-70, Method: Composition-based stats.
Identities = 79/183 (43%), Positives = 115/183 (62%), Gaps = 2/183 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M I V ++K++ F D RG+F +T+ + G+ F+QDNHS S G +RGLH+Q
Sbjct: 8 MPIPEVILIKSKVFTDDRGFFIETFKQSDFRRHGINGEFLQDNHSLSMKKGVLRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVR + G++FD+AVD+RR SPT+G WVS E+S+ N ++IP GFAHG + LE
Sbjct: 68 DPHAQGKLVRVVLGKVFDVAVDLRRESPTFGKWVSTELSSTNNHMLWIPPGFAHGMLVLE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NT ++YK T Y + + W D I+I WP+ + +L +SEKD FL + + +
Sbjct: 128 ENTHLLYKCTAEYVPASERYIRWDDPDINIKWPIKNNLL--LSEKDAAGVFLQRAEINAQ 185
Query: 181 YDG 183
Y G
Sbjct: 186 YHG 188
>gi|300022034|ref|YP_003754645.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hyphomicrobium denitrificans
ATCC 51888]
gi|299523855|gb|ADJ22324.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hyphomicrobium denitrificans
ATCC 51888]
Length = 183
Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats.
Identities = 91/179 (50%), Positives = 121/179 (67%), Gaps = 1/179 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I ++++ +FED RG+FS+TYS K LKE G+ FVQDN S S GTIRGLHFQ+
Sbjct: 6 LEIPGLKLIVPPRFEDERGFFSETYSEKALKEAGIPAPFVQDNFSLSARKGTIRGLHFQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQAKLVR GR+ D+AVDIR +SPTYG V++E+S N Q+YIP GFAHGF TLE
Sbjct: 66 APYAQAKLVRVNRGRVLDVAVDIRSSSPTYGKHVAIELSRENWAQLYIPAGFAHGFCTLE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+TEV YK + Y+ E + G+ W D ++ I WP+ + + +VS+KD LP + F
Sbjct: 126 DDTEVAYKTSAPYAPEAEGGILWSDPTLAIAWPVAPSDV-TVSDKDARLPSFANMAIAF 183
>gi|239628626|ref|ZP_04671657.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239518772|gb|EEQ58638.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 187
Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats.
Identities = 76/173 (43%), Positives = 103/173 (59%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + +++ F D RG+F +TY+ +E GL VFVQDN S S G +RGLHFQ+
Sbjct: 12 DIKGLYVIEPTVFRDERGYFVETYNQNDFREAGLDMVFVQDNQSMSVK-GVLRGLHFQKQ 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G +FD+AVD+R +S TYG W + +SA N Q YIP GFAHGF+ L
Sbjct: 71 -YPQGKLVRAVRGTVFDVAVDLRSDSETYGKWFGVVLSAENKKQFYIPEGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E YK TDFY + G+ W D + + WP+ D + +SEKD+ L
Sbjct: 130 EAEFAYKCTDFYHPGDEGGLKWDDPEVGVDWPVSDGMELIISEKDRKWGGLKD 182
>gi|309787874|ref|ZP_07682484.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella dysenteriae 1617]
gi|50982494|gb|AAT91848.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella dysenteriae]
gi|308924273|gb|EFP69770.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shigella dysenteriae 1617]
Length = 185
Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats.
Identities = 75/172 (43%), Positives = 110/172 (63%), Gaps = 2/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKS-TKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G W+ + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWIGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
E +YK T++Y+ + +++ D +I I WP L + +S KD N
Sbjct: 126 ETAEFVYKTTNYYNPSFEKSISYSDPTIKIQWPNLQDMHFKLSNKDLNAKNF 177
>gi|118588016|ref|ZP_01545426.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stappia aggregata IAM 12614]
gi|118439638|gb|EAV46269.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stappia aggregata IAM 12614]
Length = 192
Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats.
Identities = 92/181 (50%), Positives = 126/181 (69%), Gaps = 1/181 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I VRIL ++ DSRG+FS+TY+ LL + G+ F+QDNH++S + GT+RGLH+Q
Sbjct: 7 LDIPEVRILCPKRHGDSRGFFSETYNKALLSDAGIDIDFIQDNHAYSAEKGTVRGLHYQM 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVR + G I D+AVD+R SPTYG VS ISA NG QI +PTGFAHG +TLE
Sbjct: 67 PPFAQDKLVRVVRGAILDVAVDLRVGSPTYGQHVSSVISAENGKQILVPTGFAHGLVTLE 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+TEV+YKV+ +Y+ EHD G+ W D + I W L + +S KD+ LP L ++ + F
Sbjct: 127 PHTEVLYKVSQYYAPEHDRGILWNDPELAIDWGLAE-ADAVLSPKDRKLPRLAEVAACFS 185
Query: 181 Y 181
Y
Sbjct: 186 Y 186
>gi|153813189|ref|ZP_01965857.1| hypothetical protein RUMOBE_03605 [Ruminococcus obeum ATCC 29174]
gi|149830720|gb|EDM85811.1| hypothetical protein RUMOBE_03605 [Ruminococcus obeum ATCC 29174]
Length = 189
Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats.
Identities = 72/176 (40%), Positives = 102/176 (57%), Gaps = 2/176 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I ++++ F D RG+F +TY+ K G+ FVQDN S S G +RGLHFQ
Sbjct: 11 IEGLKVITPAVFGDERGYFMETYNYNDYKAAGIDMEFVQDNQS-SSRKGVLRGLHFQI-N 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q KLVR ++G +FD+AVD+R SPTYG W + +SA N Q +IP FAHGF+ L +
Sbjct: 69 YPQDKLVRVVSGEVFDVAVDLREGSPTYGQWYGVLLSAENKKQFFIPKNFAHGFVVLSDS 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
E YK TDFY + G+A+ D I + WP+ + + +S+KDQ + +
Sbjct: 129 AEFAYKCTDFYHPNDEGGLAYNDPDIGVEWPIPEGMELILSDKDQKWGSFKEYTAN 184
>gi|323483216|ref|ZP_08088607.1| hypothetical protein HMPREF9474_00356 [Clostridium symbiosum
WAL-14163]
gi|323691340|ref|ZP_08105615.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium symbiosum
WAL-14673]
gi|323403489|gb|EGA95796.1| hypothetical protein HMPREF9474_00356 [Clostridium symbiosum
WAL-14163]
gi|323504680|gb|EGB20467.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium symbiosum
WAL-14673]
Length = 186
Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats.
Identities = 75/173 (43%), Positives = 103/173 (59%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + +++ F+D RG+F +TY+ +E GL VFVQDN S S G +RGLH+Q+
Sbjct: 10 DIEGLYVIEPTVFKDERGYFVETYNQNDFREAGLDMVFVQDNQSMSVK-GVLRGLHYQKE 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R S TYG W + ISA N Q YIP GFAHGF+ L
Sbjct: 69 -FPQGKLVRAVRGEVFDVAVDLRTGSRTYGKWFGVVISAENKKQFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E YK TDFY + G+A+ D I I WP+ + + +SEKD+
Sbjct: 128 EAEFAYKCTDFYHPGDEGGLAYNDPEIGIEWPVTEGMELIISEKDKKWGGFKD 180
>gi|134046343|ref|YP_001097828.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanococcus maripaludis C5]
gi|132663968|gb|ABO35614.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanococcus maripaludis C5]
Length = 187
Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats.
Identities = 87/181 (48%), Positives = 112/181 (61%), Gaps = 4/181 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +++ + F D RG+F +TY + G+ + FVQDNHS S G +RGLHFQ
Sbjct: 8 LKIPEVILIEPKVFPDERGFFLETYKFSDFFDAGITENFVQDNHSKS-KYGVLRGLHFQN 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KLVRCI G IFD+AVD+RRNSP YG WV +S N +YIP GFAHGF L
Sbjct: 67 DPKAQGKLVRCIKGEIFDVAVDLRRNSPKYGKWVGEILSEENKKMLYIPNGFAHGFCVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
E+IYK T+ Y D+G+ W D++I I WP++D P +SEKD LP L + F
Sbjct: 127 SEAEIIYKCTEEYVPGCDAGILWNDETIGIDWPVVD---PIISEKDSLLPNLVDSNVNFR 183
Query: 181 Y 181
Y
Sbjct: 184 Y 184
>gi|310817081|ref|YP_003965045.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ketogulonicigenium vulgare
Y25]
gi|308755816|gb|ADO43745.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ketogulonicigenium vulgare
Y25]
Length = 183
Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats.
Identities = 92/182 (50%), Positives = 123/182 (67%), Gaps = 4/182 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V I+ + D+RG+FS++++ + + + GL FVQDNHS S GT+RGLHFQ P
Sbjct: 6 SLPGVMIVTPARHGDARGFFSESWNRQRMADAGLVYDFVQDNHSLSMRVGTLRGLHFQSP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQAKLVRC GR+FD+AVDIR+ SPTYG WV +E+S NG Q+ IP GF HGF+TLE
Sbjct: 66 PHAQAKLVRCGRGRLFDVAVDIRKGSPTYGKWVGVELSFENGRQLLIPEGFLHGFVTLEP 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
TEV+YK TD+Y+ + D V W S I WPL P +S+KD L+ DSPF++
Sbjct: 126 ETEVVYKCTDYYAPDCDGAVLWD--SCGIEWPLEGE--PLLSDKDLRAVPLSDFDSPFDF 181
Query: 182 DG 183
G
Sbjct: 182 KG 183
>gi|323135557|ref|ZP_08070640.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylocystis sp. ATCC 49242]
gi|322398648|gb|EFY01167.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylocystis sp. ATCC 49242]
Length = 183
Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats.
Identities = 89/179 (49%), Positives = 123/179 (68%), Gaps = 1/179 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I ++++ +KF D RG+FS+TY++ ++ GL FVQDNHS S D GT+RGLHFQ
Sbjct: 5 LEIEGLKLVTPKKFGDERGFFSETYNASTWEKAGLHYKFVQDNHSLSRDVGTVRGLHFQT 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVR + GRI D+AVD+RR+SPT+G V++E+S N Q+ +P GFAHGF+TLE
Sbjct: 65 APFAQDKLVRVVQGRILDVAVDLRRSSPTFGRHVAVELSKENWRQLLVPIGFAHGFVTLE 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+TEV+YKVT+FYS +HD G+AW D + + WP +S KDQ P L + F
Sbjct: 125 PDTEVLYKVTNFYSPQHDCGLAWDDPDLGVAWP-DVAKNAVLSAKDQKWPRLRDLPEVF 182
>gi|319761364|ref|YP_004125301.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Alicycliphilus denitrificans
BC]
gi|317115925|gb|ADU98413.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alicycliphilus denitrificans
BC]
Length = 181
Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats.
Identities = 74/177 (41%), Positives = 110/177 (62%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ + F D+RG+F ++++ K E G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVVLIEPKVFGDARGFFFESFNQKAFDEATGTHFQFVQDNHSRSGR-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR + G ++D+AVDIRRNSPT+G WV E+S +N Q+++P GFAHGF+ L
Sbjct: 65 VQQP-QGKLVRVVRGAVWDVAVDIRRNSPTFGRWVGAELSEDNQRQLWVPPGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + +YK TD+Y+ +H+ +AW D + I WP P +S KDQ L + +
Sbjct: 124 SESADFLYKTTDYYAPQHERCIAWNDAQLAIAWPYAGE--PVLSAKDQAGKPLAEAE 178
>gi|150020961|ref|YP_001306315.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermosipho melanesiensis
BI429]
gi|149793482|gb|ABR30930.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermosipho melanesiensis
BI429]
Length = 190
Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats.
Identities = 78/174 (44%), Positives = 110/174 (63%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I+K + DSRG+F ++++ K E+GL FVQDNHS S G +RGLHFQ
Sbjct: 11 IEGLYIIKPTVYGDSRGFFMESWNRKEFAEIGLDMDFVQDNHSKS-KKGVLRGLHFQ-EK 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q KLVR + G ++D+AVD+R++SPT+G + + +S N L YIP GFAHGF+ L
Sbjct: 69 YPQGKLVRVVKGVVYDVAVDLRKDSPTFGKYYGVILSEENKLMFYIPEGFAHGFLVLSDE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL--PSVSEKDQNLPFLNQ 174
+YK T++Y E+DSG+ W D I I WP + + P +SEKD+ LP L +
Sbjct: 129 VHFLYKATEYYYPEYDSGIIWNDPDIAIKWPFEEYRIEYPILSEKDKKLPTLRE 182
>gi|283798719|ref|ZP_06347872.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium sp. M62/1]
gi|291073581|gb|EFE10945.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium sp. M62/1]
gi|295090733|emb|CBK76840.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium cf.
saccharolyticum K10]
gi|295114995|emb|CBL35842.1| dTDP-4-dehydrorhamnose 3,5-epimerase [butyrate-producing bacterium
SM4/1]
Length = 184
Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats.
Identities = 78/173 (45%), Positives = 104/173 (60%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + +++ F+D RG+F +TY+ KE GL VFVQDN S S G +RGLH+Q+
Sbjct: 10 DIKGLYVIEPTVFKDERGYFVETYNQNDFKEAGLDMVFVQDNQSMSVK-GVLRGLHYQKQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR I G +FD+AVD+R +S TYG W + +SA N Q YIP GFAHGF+ L
Sbjct: 69 -YPQGKLVRAIRGTVFDVAVDLRADSETYGKWFGVVLSAENKKQFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E YK TDFY + G+AW D I + WP+ + + +SEKDQ
Sbjct: 128 EAEFAYKCTDFYHPGDEGGLAWNDPEIGVEWPIEEGMKLIISEKDQKWGGFKD 180
>gi|50083371|ref|YP_044881.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Acinetobacter sp.
ADP1]
gi|49529347|emb|CAG67059.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Acinetobacter sp.
ADP1]
Length = 187
Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats.
Identities = 82/180 (45%), Positives = 119/180 (66%), Gaps = 6/180 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL----GLQ-DVFVQDNHSFSFDCGTIRGL 56
I + I + R F D RGWF ++++ ++ ++ GL FVQDNHSFS G +RGL
Sbjct: 7 KIKDLLIFEPRVFGDDRGWFMESFNQQVFEQALTERGLDIPKFVQDNHSFS-KKGVLRGL 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H+Q P+AQ KLVR + GR +D+AVDIR NS T+G WV +E++A+N Q +IP GFAHGF
Sbjct: 66 HYQLNPHAQGKLVRVVQGRAWDVAVDIRENSSTFGEWVGVELTADNHKQFWIPAGFAHGF 125
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ LE NT+ +YK TD+YS E + + W D++I+I WP+ + +++KD+ P L Q D
Sbjct: 126 IALEDNTQFLYKTTDYYSKECERSIVWNDETINIEWPIEKDLEILLTDKDRLAPQLIQAD 185
>gi|325281623|ref|YP_004254165.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Odoribacter splanchnicus DSM
20712]
gi|324313432|gb|ADY33985.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Odoribacter splanchnicus DSM
20712]
Length = 190
Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats.
Identities = 78/180 (43%), Positives = 111/180 (61%), Gaps = 2/180 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F D RG+F +++S + + + VFVQDN S S G +RGLHFQ+PP
Sbjct: 8 IPGVVIVQPRIFGDERGYFFESFSQRDFERQVCKTVFVQDNESKSC-YGVVRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLVR + GR+ D+AVDIR+ SPT+G +VS+E++ N Q +IP GFAHGF L
Sbjct: 67 YAQSKLVRVVKGRVLDVAVDIRKGSPTFGKYVSVELTEENKRQFFIPRGFAHGFAVLSTE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK +FY+ E + +AW D + I W + +SEKD++ P L F+Y+
Sbjct: 127 AVFQYKCDNFYAPESEGALAWDDPDLGIDWRIP-AAKVILSEKDRHHPCLKDACDWFDYN 185
>gi|330823239|ref|YP_004386542.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alicycliphilus denitrificans
K601]
gi|329308611|gb|AEB83026.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alicycliphilus denitrificans
K601]
Length = 181
Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats.
Identities = 74/177 (41%), Positives = 110/177 (62%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ + F D+RG+F ++++ K E G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVVLIEPKVFGDARGFFFESFNQKAFDEATGTNFQFVQDNHSRSGR-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR + G ++D+AVDIRRNSPT+G WV E+S +N Q+++P GFAHGF+ L
Sbjct: 65 VQQP-QGKLVRVVRGAVWDVAVDIRRNSPTFGRWVGAELSEDNQRQLWVPPGFAHGFVAL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + +YK TD+Y+ +H+ +AW D + I WP P +S KDQ L + +
Sbjct: 124 SESADFLYKTTDYYAPQHERCIAWNDAQLAIAWPYAGE--PVLSAKDQAGKPLAEAE 178
>gi|148556919|ref|YP_001264501.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingomonas wittichii RW1]
gi|148502109|gb|ABQ70363.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingomonas wittichii RW1]
Length = 185
Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats.
Identities = 102/185 (55%), Positives = 130/185 (70%), Gaps = 1/185 (0%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
PV+++ TR+F D RGWFS+TY G + FVQDNHS+S GT+RG+HFQ PP+A
Sbjct: 2 PVKLIHTRRFGDDRGWFSETYHRPRWTADGAAEEFVQDNHSYSKHAGTLRGIHFQAPPHA 61
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
QAKLVRCI GRI D AVD+R SPTYG V+ E+SA+NG Q+YIP GF H F+TLE ++E
Sbjct: 62 QAKLVRCIRGRILDYAVDLRAGSPTYGRHVAAELSADNGDQLYIPVGFGHAFVTLEPDSE 121
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGL 184
VIYKV+D Y+ + D G++W ++ I WPL P +S+KD+ LP L DSPF YDG
Sbjct: 122 VIYKVSDVYAPDVDGGISWDCPTLAIDWPLPPGG-PVLSDKDRTLPHLADWDSPFAYDGA 180
Query: 185 PLLSL 189
PL L
Sbjct: 181 PLRPL 185
>gi|313159056|gb|EFR58431.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alistipes sp. HGB5]
Length = 191
Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats.
Identities = 76/180 (42%), Positives = 106/180 (58%), Gaps = 2/180 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V IL+ F D+RG+F ++YS + FVQDN S S G +RGLHFQ+
Sbjct: 8 IEGVVILEPEVFGDARGYFFESYSQRRFDAEVRPVRFVQDNESHS-RYGVLRGLHFQKGR 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+Q+KLVR + GR+ D+AVDIRR SPT+G V++E++ +N Q +IP GFAHGF L
Sbjct: 67 YSQSKLVRVVRGRVLDVAVDIRRGSPTFGRHVAVELTEDNKRQFFIPRGFAHGFAVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK + YS E + +AW D S+ I W L + +S KD P L++ F+Y+
Sbjct: 127 ATFQYKCDNPYSPESEGAIAWNDPSLGIDWRLAPEDV-ILSPKDSAHPLLSEAGELFDYN 185
>gi|118593889|ref|ZP_01551247.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stappia aggregata IAM 12614]
gi|118433510|gb|EAV40179.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stappia aggregata IAM 12614]
Length = 188
Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats.
Identities = 92/181 (50%), Positives = 126/181 (69%), Gaps = 1/181 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I VRIL ++ DSRG+FS+TY+ LL + G+ F+QDNH++S + GT+RGLH+Q
Sbjct: 7 LDIPEVRILCPKRHGDSRGFFSETYNKALLSDAGIDIDFIQDNHAYSAEKGTVRGLHYQM 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVR + G I D+AVD+R SPTYG VS ISA NG QI +PTGFAHG +TLE
Sbjct: 67 PPFAQDKLVRVVRGAILDVAVDLRVGSPTYGQHVSSVISAENGKQILVPTGFAHGLVTLE 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+TEV+YKV+ +Y+ EHD G+ W D + I W L + +S KD+ LP L ++ + F
Sbjct: 127 PHTEVLYKVSQYYAPEHDRGILWNDPELAIDWGLAE-ADAVLSPKDRKLPRLAEVAACFS 185
Query: 181 Y 181
Y
Sbjct: 186 Y 186
>gi|332715608|ref|YP_004443074.1| dTDP-rhamnose-3,5-epimerase [Agrobacterium sp. H13-3]
gi|325062293|gb|ADY65983.1| dTDP-rhamnose-3,5-epimerase [Agrobacterium sp. H13-3]
Length = 189
Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats.
Identities = 84/180 (46%), Positives = 118/180 (65%), Gaps = 2/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I+ ++ + +F DSRG+FS+ + + +E FVQDN S S GT+RGLHFQ
Sbjct: 7 SISGLKKITPARFGDSRGYFSEVFKREWFRENVSDVEFVQDNESLSAQAGTVRGLHFQTQ 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVRC+ GR+ D+AVDIR SPT+G W ++E+S NG Q+++P GFAHGFMTL
Sbjct: 67 PFAQGKLVRCLRGRLLDVAVDIRTGSPTFGQWTAVELSPENGEQLWVPAGFAHGFMTLVD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+T + YKVT YS +D GV W D +I I WP +D+ +S+KD P L+++ F Y
Sbjct: 127 DTVISYKVTAPYSAANDRGVKWDDPAIGINWPKMDSC--VLSDKDAKQPSLSELPEYFTY 184
>gi|300728483|ref|ZP_07061842.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella bryantii B14]
gi|299774201|gb|EFI70834.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella bryantii B14]
Length = 190
Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats.
Identities = 74/181 (40%), Positives = 108/181 (59%), Gaps = 2/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI+ V I++ R F D RG+F ++++ K E FVQDN S S G +RGLHFQ+
Sbjct: 7 NIDGVVIIEPRIFADERGYFYESWNEKEFNEKVRPIRFVQDNQSKSS-YGVLRGLHFQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
++Q+KLVR + GR+ D+AVDIR+ SPT+G V++E++ +N Q +IP GFAHGF L
Sbjct: 66 EHSQSKLVRVVKGRVLDVAVDIRKGSPTFGQHVAVELTEDNQRQFFIPRGFAHGFSVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK + Y E + +AW D+++ I W + + +SEKD N P L F+Y
Sbjct: 126 TAIFQYKCDNLYCKESEGAIAWDDEALGIDWKIPADQV-ILSEKDANHPLLKDSPYLFDY 184
Query: 182 D 182
Sbjct: 185 Q 185
>gi|198275009|ref|ZP_03207541.1| hypothetical protein BACPLE_01168 [Bacteroides plebeius DSM 17135]
gi|198272456|gb|EDY96725.1| hypothetical protein BACPLE_01168 [Bacteroides plebeius DSM 17135]
Length = 187
Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats.
Identities = 83/182 (45%), Positives = 113/182 (62%), Gaps = 2/182 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F+D+RG+F +++S + +E + FVQDN S S G +RGLHFQRPP
Sbjct: 8 IEGVVIIEPRIFKDARGYFFESFSQREFEEKVGKINFVQDNESMSS-YGVMRGLHFQRPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q+KLVRC+ G + D+AVDIR+ SPTYG V++E++ +N Q +IP GFAHGF L
Sbjct: 67 YTQSKLVRCVKGAVLDVAVDIRKGSPTYGQHVAVELTEDNHRQFFIPQGFAHGFAVLSET 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK +FY E D G++ D S+ I W + T +SEKD P L DSPFE+
Sbjct: 127 AIFQYKCDNFYHPEADGGISILDDSLGIDWRIP-TEHAILSEKDTKHPLLKDFDSPFEFG 185
Query: 183 GL 184
Sbjct: 186 AF 187
>gi|330829239|ref|YP_004392191.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aeromonas veronii B565]
gi|328804375|gb|AEB49574.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aeromonas veronii B565]
Length = 183
Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats.
Identities = 85/175 (48%), Positives = 114/175 (65%), Gaps = 3/175 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + + F D RG+F ++++ KL +E G Q FVQDNHS S G +RGLH+Q P
Sbjct: 8 IPDVLIFEPKVFGDERGFFFESFNHKLFEEAVGYQVNFVQDNHSKSSK-GVLRGLHYQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVRC+AG +FD+AVDIR++SPT+G WV + +S N Q++IP GFAHGF+TL
Sbjct: 67 PNAQGKLVRCVAGEVFDVAVDIRKSSPTFGKWVGVHLSGENKRQLWIPEGFAHGFVTLTE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK T++Y+ D G+AW D SI I WP L+ + + S KD L D
Sbjct: 127 TAEFLYKTTNYYAPVSDRGIAWNDASIGIKWPELNADILT-SAKDSTAKSLETAD 180
>gi|331086187|ref|ZP_08335269.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330406346|gb|EGG85860.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 183
Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats.
Identities = 73/175 (41%), Positives = 105/175 (60%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ ++++ F D RG+F +TY+ KE G+ FVQDN S S G +RGLHFQ
Sbjct: 10 EIDGLKVITPTVFGDERGYFMETYNYNDYKEAGIDMEFVQDNQSCS-KKGVLRGLHFQI- 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR ++G ++D+AVD+R S TYG W + +SA N Q +IP FAHGF+ L
Sbjct: 68 NYPQDKLVRVVSGEVYDVAVDLREGSETYGKWYGVLLSAENKKQFFIPKNFAHGFLVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E YK TDFY + G+AW D I + WP+ + + ++SEKDQ + ++
Sbjct: 128 SAEFAYKCTDFYHPNDEGGLAWNDPDIGVEWPIPEGMELTISEKDQKWTGIKELK 182
>gi|325662387|ref|ZP_08150996.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471389|gb|EGC74612.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lachnospiraceae bacterium
4_1_37FAA]
Length = 185
Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats.
Identities = 74/168 (44%), Positives = 100/168 (59%), Gaps = 2/168 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I ++++ F D RG+F +TY+ KE G+ FVQDN S S G +RGLHFQ
Sbjct: 10 EIEGLKVITPTVFGDERGYFMETYNYNDYKEAGIDMEFVQDNQS-SSKKGVLRGLHFQI- 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR ++G +FD+AVD+R S TYG W + +SA N Q +IP FAHGF+ L
Sbjct: 68 NFPQDKLVRVVSGEVFDVAVDLREGSKTYGQWYGVLLSAENKKQFFIPKDFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
E YK TDFY + G+AW D I I WP+ + + ++SEKDQ
Sbjct: 128 TAEFAYKCTDFYHPNDEGGLAWNDPDIGIQWPIPEGMELTISEKDQKW 175
>gi|302875844|ref|YP_003844477.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium cellulovorans
743B]
gi|307689277|ref|ZP_07631723.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium cellulovorans
743B]
gi|302578701|gb|ADL52713.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium cellulovorans
743B]
Length = 185
Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats.
Identities = 74/177 (41%), Positives = 100/177 (56%), Gaps = 2/177 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ F D RG+F +TY+ KE GL VFVQDN S S G +RGLHFQ
Sbjct: 11 IKDLYIIEPTVFGDHRGYFMETYNYDEFKEAGLDMVFVQDNQSKS-KKGVLRGLHFQTK- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR I G ++D+AVD+R S TYG + +S N Q Y+P GFAHGF+
Sbjct: 69 FPQGKLVRVIKGEVYDVAVDLREGSETYGKCYGVFLSEENKRQFYVPEGFAHGFLVTSEE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
E +YK T+ Y E + G+ W D I + WPL +S+KD+N L + + F
Sbjct: 129 AEFVYKCTNLYHPEFEGGILWNDPEIGVEWPLDGIEEVLLSDKDKNAKTLKESNVKF 185
>gi|116491430|ref|YP_810974.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oenococcus oeni PSU-1]
gi|290891010|ref|ZP_06554074.1| hypothetical protein AWRIB429_1464 [Oenococcus oeni AWRIB429]
gi|116092155|gb|ABJ57309.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oenococcus oeni PSU-1]
gi|290479409|gb|EFD88069.1| hypothetical protein AWRIB429_1464 [Oenococcus oeni AWRIB429]
Length = 189
Score = 267 bits (684), Expect = 5e-70, Method: Composition-based stats.
Identities = 71/180 (39%), Positives = 112/180 (62%), Gaps = 1/180 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V++++T F D RG+F++T++ + ++LGL+ F QDN S S + G +RG+H+Q
Sbjct: 8 SLQDVKLIETEVFGDKRGFFTETWTKEKFEKLGLKFDFTQDNQSLSAEAGVLRGMHYQLA 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ K+VR + G ++D VD+R+ SPTYG W +S N Q+ +P GFAHGF+TL
Sbjct: 68 PYAQTKIVRVVTGVVWDCLVDMRKGSPTYGKWEGYILSEYNHRQLLVPKGFAHGFVTLTP 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N +YKV +Y+ + D G+A+ D + I WP + +S+KD P L ++ F Y
Sbjct: 128 NVNFVYKVDGYYAPKADRGIAFDDPDVGIQWP-TNVEHAIMSDKDLKHPLLKDAENNFVY 186
>gi|93115449|gb|ABE98411.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli]
gi|203285011|gb|ACH97130.1| RmlC [Escherichia coli]
gi|203285023|gb|ACH97141.1| RmlC [Escherichia coli]
Length = 180
Score = 267 bits (684), Expect = 5e-70, Method: Composition-based stats.
Identities = 77/173 (44%), Positives = 110/173 (63%), Gaps = 4/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ + +E+ G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFMESFNQRQFEEIVGRKISFVQDNHSKS-KKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVRCI G ++D+AVD+R S YG WV + +SA N Q++IP GFAHGF+ +
Sbjct: 66 PPFAQGKLVRCINGEVYDVAVDLRPESINYGKWVGIILSAENKKQLWIPEGFAHGFLVIS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
E YK T++YS E + G+ W D +I+I WP + L +S KD PF+
Sbjct: 126 EFAEFAYKTTNYYSKESERGIRWNDPTINIQWPKMGQYL--LSPKDALAPFIE 176
>gi|225386850|ref|ZP_03756614.1| hypothetical protein CLOSTASPAR_00598 [Clostridium asparagiforme
DSM 15981]
gi|225047047|gb|EEG57293.1| hypothetical protein CLOSTASPAR_00598 [Clostridium asparagiforme
DSM 15981]
Length = 185
Score = 267 bits (684), Expect = 5e-70, Method: Composition-based stats.
Identities = 78/172 (45%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + +++ F+D RG+F +TY+ +E GL VFVQDN S S G +RGLHFQ+
Sbjct: 12 IEGLYVIEPTVFKDERGYFVETYNQNDFREAGLNMVFVQDNQSMSVK-GVLRGLHFQKQ- 69
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q KLVR I G +FD+AVD+R +S TYG W + +SA N Q YIP GFAHGF+ L
Sbjct: 70 YPQGKLVRAIRGTVFDVAVDLRSDSGTYGKWFGVTLSAENKKQFYIPEGFAHGFLVLSDE 129
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E YK TDFY + G+ W D I + WP+ + + +SEKDQ L
Sbjct: 130 AEFAYKCTDFYHPGDEGGLLWSDPEIGVEWPIEEGMELIISEKDQKWSGLKD 181
>gi|224823815|ref|ZP_03696924.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lutiella nitroferrum 2002]
gi|224604270|gb|EEG10444.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lutiella nitroferrum 2002]
Length = 181
Score = 267 bits (684), Expect = 5e-70, Method: Composition-based stats.
Identities = 81/173 (46%), Positives = 115/173 (66%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+I++ + F D RG+F ++++ K +E G Q FVQDNHS S G +RGLH+Q P
Sbjct: 8 IPDVKIIEPQVFGDERGFFYESFNHKQFEEAIGQQVKFVQDNHSRSVK-GVLRGLHYQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQAKLVRC G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 67 PHAQAKLVRCAVGEVFDVAVDIRKSSPTFGQWVGVNLSAENKRQLWIPEGFAHGFLTLSK 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK TD+Y+ E + + W D+++ I WP P++S+KD N
Sbjct: 127 VAEFLYKTTDYYAPESERCINWNDQNLSIKWPT--GFDPTLSKKDNNGLAFTD 177
>gi|149195145|ref|ZP_01872236.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caminibacter mediatlanticus
TB-2]
gi|149134697|gb|EDM23182.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caminibacter mediatlanticus
TB-2]
Length = 187
Score = 267 bits (684), Expect = 5e-70, Method: Composition-based stats.
Identities = 76/175 (43%), Positives = 110/175 (62%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I++ + F D RG+F +T+ L ++ + F+QDN S S G +RGLH+Q P
Sbjct: 7 KLPEVVIIEPKVFGDDRGYFMETFRQDLFEKNIRKIDFIQDNESKS-KRGVLRGLHYQLP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR I G++ D+AVDIR+NSPT+ +V++E+S N Q++IP GFAHGF+ L
Sbjct: 66 PFAQSKLVRVIKGKVLDVAVDIRKNSPTFKQYVAVELSEENKRQLFIPRGFAHGFLVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YKV ++YS EHD + + D I I W L +SEKD+N PFL +
Sbjct: 126 EAIFTYKVDNYYSPEHDRSIRFDDLEIGIDWNFPKEEL-IISEKDKNAPFLKDAE 179
>gi|197333915|ref|YP_002154931.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio fischeri MJ11]
gi|197315405|gb|ACH64852.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio fischeri MJ11]
Length = 189
Score = 267 bits (684), Expect = 5e-70, Method: Composition-based stats.
Identities = 77/175 (44%), Positives = 108/175 (61%), Gaps = 6/175 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVKIIEPSVFGDERGFFMETWNQKQFEELVTGKLTQFVQDNHSKS-KKGILRGLHYQT 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR I+G +FD+AVDIR+ SPT+G W+ +SA N Q++IP GFAHGF
Sbjct: 67 EN-TQGKLVRVISGEVFDVAVDIRKGSPTFGQWIGEYLSAENKRQLWIPEGFAHGFYVTS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ + + W D +++I WPL +LPS+S KD+ N +
Sbjct: 126 EEAEFVYKCTDYYNPTAEVSIKWDDPTVNIEWPLK--MLPSLSNKDKKAKMFNDV 178
>gi|108805902|ref|YP_645839.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rubrobacter xylanophilus DSM
9941]
gi|108767145|gb|ABG06027.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rubrobacter xylanophilus DSM
9941]
Length = 183
Score = 267 bits (684), Expect = 5e-70, Method: Composition-based stats.
Identities = 75/174 (43%), Positives = 107/174 (61%), Gaps = 5/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V +++ + F D RG+F ++++ + +E GL + FVQDN S S G +RGLHFQ
Sbjct: 7 ELPGVLVVEPQVFGDERGFFMESFNGRRYREAGLPERFVQDNLSLS-RRGVLRGLHFQH- 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLV + G +FD+AVD+RR SPT+G WV L +S N Q+YIP GFAHGF+ L
Sbjct: 65 PRGQGKLVSVLRGEVFDVAVDVRRGSPTFGRWVGLSLSEENRRQLYIPPGFAHGFVVLSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK T++Y+ E + V W D I I WP+ + P +SEKD+ P L ++
Sbjct: 125 AALFFYKCTEYYAPECERTVLWSDPEIGIGWPVEE---PVLSEKDRKAPALREM 175
>gi|94311664|ref|YP_584874.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cupriavidus metallidurans
CH34]
gi|93355516|gb|ABF09605.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Cupriavidus metallidurans CH34]
Length = 184
Score = 267 bits (684), Expect = 5e-70, Method: Composition-based stats.
Identities = 75/175 (42%), Positives = 112/175 (64%), Gaps = 4/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ + F D+RG+F ++++ K E GL FVQDNHS S G +RGLH+Q
Sbjct: 10 IPDVMIIEPKVFGDARGFFFESFNQKAFGEATGLDLEFVQDNHSRSAK-GVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + GR+FD+AVDIR+ S T+G WV +E+S +N Q ++P GFAHGF+ L
Sbjct: 69 QP-QGKLVRVVRGRVFDVAVDIRKQSATFGKWVGVELSEDNHRQFWVPPGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + +YK TD+Y+ + + +AW D I I WP ++ ++P +S KDQ L+ +
Sbjct: 128 SADFLYKTTDYYAPQFERTIAWNDPEIGIEWPQMN-VVPLLSAKDQAGVSLSSAE 181
>gi|229512766|ref|ZP_04402234.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae TMA 21]
gi|29726007|gb|AAO88936.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]
gi|229350276|gb|EEO15228.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae TMA 21]
Length = 183
Score = 267 bits (684), Expect = 6e-70, Method: Composition-based stats.
Identities = 76/168 (45%), Positives = 105/168 (62%), Gaps = 5/168 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPTVFGDERGFFMETWNQKRFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 TEN-TQGKLVRVVSGEVFDVAVDIRKDSPTFGKWVGVYLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E +YK TD+Y+ + + W D I I WPL T P +S KDQ
Sbjct: 125 SDEAEFVYKCTDYYNPTAEHSLLWNDPDIAIVWPLSGT-EPQLSVKDQ 171
>gi|168818217|ref|ZP_02830217.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205344842|gb|EDZ31606.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|320086526|emb|CBY96297.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 176
Score = 267 bits (684), Expect = 6e-70, Method: Composition-based stats.
Identities = 81/172 (47%), Positives = 113/172 (65%), Gaps = 5/172 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFSDERGFFMESFNQKVFEEAVGRKIEFVQDNHSKS-TKGVLRGLHYQV 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRCIAG +FD+AVDIR++S T+G WV + IS+ N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCIAGEVFDVAVDIRKDSETFGKWVGVNISSENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
E +YK +++YS EH+ G+ W D I+ITW + P +S KD+ L
Sbjct: 126 EEAEFVYKTSNYYSGEHERGIIWNDPDINITWGIDS---PILSLKDKIHKGL 174
>gi|212694335|ref|ZP_03302463.1| hypothetical protein BACDOR_03861 [Bacteroides dorei DSM 17855]
gi|237727666|ref|ZP_04558147.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D4]
gi|212662836|gb|EEB23410.1| hypothetical protein BACDOR_03861 [Bacteroides dorei DSM 17855]
gi|229434522|gb|EEO44599.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides dorei 5_1_36/D4]
Length = 190
Score = 267 bits (683), Expect = 6e-70, Method: Composition-based stats.
Identities = 79/180 (43%), Positives = 111/180 (61%), Gaps = 2/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +++ R F+D RG+F +++S + E + FVQDN S S G +RGLHFQ+
Sbjct: 7 GIEGVVVIEPRIFKDERGYFFESFSQREFNEKVMPVNFVQDNESMSS-YGVMRGLHFQQM 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY Q+KLVRC+ G + D+AVDIR+ SPTYG V++E++ N LQ +IP GFAHGF L
Sbjct: 66 PYTQSKLVRCVKGAVLDVAVDIRKGSPTYGQHVAVELTEENHLQFFIPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +FY+ + D G+ +D+S+ I W + +SEKD P L DSPF+Y
Sbjct: 126 IAVFQYKCDNFYAPQADGGIQLRDESLGIDWKIP-VAEAILSEKDLKHPLLKDYDSPFDY 184
>gi|294672873|ref|YP_003573489.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella ruminicola 23]
gi|294473377|gb|ADE82766.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella ruminicola 23]
Length = 184
Score = 267 bits (683), Expect = 6e-70, Method: Composition-based stats.
Identities = 81/180 (45%), Positives = 115/180 (63%), Gaps = 2/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I+ V I++ R FEDSRG+F +++S + +E FVQDN S S G +RGLHFQRP
Sbjct: 7 SIDGVFIIEPRIFEDSRGYFFESFSQREFEEKIGPINFVQDNESKSS-YGVMRGLHFQRP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ Q+KLVRC+ G + D+AVDIR+ SPTYG V++E++ +N Q +IP GFAHGF L
Sbjct: 66 PFTQSKLVRCVKGAVLDVAVDIRKGSPTYGQHVAVELTEDNHRQFFIPKGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +FY E D G++ D+S++I W + T +S+KD P L ++PF Y
Sbjct: 126 TAVFQYKCDEFYHPEADGGISILDESLNIDWHIP-TDKAILSDKDTKHPLLKDFETPFNY 184
>gi|225016237|ref|ZP_03705429.1| hypothetical protein CLOSTMETH_00140 [Clostridium methylpentosum
DSM 5476]
gi|224950995|gb|EEG32204.1| hypothetical protein CLOSTMETH_00140 [Clostridium methylpentosum
DSM 5476]
Length = 182
Score = 267 bits (683), Expect = 7e-70, Method: Composition-based stats.
Identities = 72/174 (41%), Positives = 102/174 (58%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I+ +F+D+RG+F +TY+ + GL FVQDN S S G +RGLHFQ+
Sbjct: 10 GIKDLYIIDNARFDDARGYFMETYNKQDFDAAGLTMNFVQDNQSKS-TKGVLRGLHFQKT 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G ++D+AVD+R S TYG W + +S N Q Y+P GFAHGF+ L
Sbjct: 69 -HPQGKLVRVTKGAVYDVAVDLRPGSETYGKWHGVTLSEENHRQFYVPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TDFY E + + W D + I WP+ + + +S+KD+ P L I
Sbjct: 128 VAEFVYKCTDFYHPEDEGALFWNDPDVGIDWPITEDMTILLSDKDKKNPLLKDI 181
>gi|9957848|gb|AAG09525.1|AF279621_4 dTDP-6-deoxy-D-glucose-3,5-epimerase [Salmonella enterica]
Length = 176
Score = 267 bits (683), Expect = 7e-70, Method: Composition-based stats.
Identities = 81/171 (47%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFSDERGFFMESFNQKVFEEAVGPKIEFVQDNHSKS-TKGVLRGLHYQV 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRCIAG +FD+AVDIR++S T+G WV + +S+ N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCIAGEVFDVAVDIRKDSETFGKWVGVNLSSENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPF 171
E +YK +++YS EH+ G+ W D I+ITW + P +S KD+N P
Sbjct: 126 EEAEFVYKTSNYYSAEHERGIIWNDTDINITWGIGS---PILSLKDKNSPR 173
>gi|260170808|ref|ZP_05757220.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D2]
gi|315919142|ref|ZP_07915382.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D2]
gi|313693017|gb|EFS29852.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D2]
Length = 190
Score = 267 bits (683), Expect = 7e-70, Method: Composition-based stats.
Identities = 81/180 (45%), Positives = 110/180 (61%), Gaps = 2/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI V I++ R F+D RG+F +++S + E FVQDN S S G +RGLHFQ
Sbjct: 7 NIEGVVIIEPRLFKDDRGYFFESFSQREFDEKVRPIKFVQDNESMSS-YGVMRGLHFQTM 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY+Q+KLVRC+ G + D+AVDIR+ SPTYG V++E++ N Q +IP GFAHGF L
Sbjct: 66 PYSQSKLVRCVKGTVLDVAVDIRKGSPTYGQHVAVELTEENHRQFFIPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +FY+ +HD G++ D S+ I W + T +SEKD P L +SPF Y
Sbjct: 126 KAVFQYKCDNFYAPQHDGGISILDDSLGICWRIP-TGKAILSEKDTKHPLLKDFESPFLY 184
>gi|9957853|gb|AAG09529.1|AF279622_4 dTDP-6-deoxy-D-glucose-3,5-epimerase [Salmonella enterica]
Length = 177
Score = 267 bits (683), Expect = 7e-70, Method: Composition-based stats.
Identities = 82/172 (47%), Positives = 113/172 (65%), Gaps = 4/172 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ + +E G + FV DNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFSDERGFFMESFNQTVFEEAVGRKIEFVLDNHSKS-TKGVLRGLHYQV 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRCIAG +FD+AVDIR++S T+G W+ + +S+ N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCIAGEVFDVAVDIRKDSETFGKWIGVNLSSENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
E +YK T+FY+ D GVAW D I I WPL++ P +S+KD PFL
Sbjct: 126 EEAEFLYKTTNFYNPRSDRGVAWNDPYIGINWPLVNN--PLLSDKDSKQPFL 175
>gi|150017459|ref|YP_001309713.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium beijerinckii
NCIMB 8052]
gi|149903924|gb|ABR34757.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium beijerinckii
NCIMB 8052]
Length = 191
Score = 267 bits (683), Expect = 7e-70, Method: Composition-based stats.
Identities = 71/175 (40%), Positives = 106/175 (60%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ + F D+RG+F + Y+ K + G FVQDN S S G +RGLHFQR
Sbjct: 10 KIKGLYIIEPKVFGDNRGYFMENYNKKQFEAAGFNMNFVQDNESKSVK-GVLRGLHFQRE 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
++Q KL+R G +FD+AVD+R S TYG W + +S N Q Y+P GFAHGF+ +
Sbjct: 69 -HSQGKLIRVTKGEVFDVAVDLRNGSKTYGNWEGIVLSEENKKQFYVPEGFAHGFLVISN 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ YK TD+Y+ E++ G+ W D I++ WPL + +SEKD+ L+++D
Sbjct: 128 EAILNYKCTDYYAKEYECGIMWNDPDINVNWPLENIENVILSEKDKANSMLSELD 182
>gi|254993500|ref|ZP_05275690.1| hypothetical protein LmonocytoFSL_11287 [Listeria monocytogenes FSL
J2-064]
Length = 187
Score = 267 bits (683), Expect = 7e-70, Method: Composition-based stats.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+++K + F D RG+F ++Y+ K E G+ F+QDNHS S + G +RG+H+Q
Sbjct: 7 KLAGVKLVKPKVFGDHRGFFMESYNEKAFHEAGIDMKFIQDNHSLSVEAGVLRGMHYQTN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL+R G I+D+ VD+R+ SPTYG W +S N Q+ +P GFAHGF T+
Sbjct: 67 PKAQTKLIRVATGAIYDVVVDMRKGSPTYGEWEGYILSEANKHQLLVPQGFAHGFCTITE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
N V+YKV YS E+D+G+A+ D ++ITWP T +S+KD P L +
Sbjct: 127 NVNVLYKVDQLYSPENDAGIAYDDPDLNITWP---TDKLILSDKDTKHPRLKXLK 178
>gi|313157732|gb|EFR57143.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alistipes sp. HGB5]
Length = 190
Score = 266 bits (682), Expect = 8e-70, Method: Composition-based stats.
Identities = 75/180 (41%), Positives = 107/180 (59%), Gaps = 2/180 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V IL+ F D+RG+F ++YS + FVQDN S S G +RGLHFQ+
Sbjct: 8 IDGVVILEPEVFGDARGYFFESYSQRRFDAEVRPVRFVQDNESHS-RYGVLRGLHFQKGR 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+Q+KLVR + GR+ D+AVDIRR SPT+G V++E++ +N Q +IP GFAHGF L
Sbjct: 67 YSQSKLVRVVRGRVLDVAVDIRRGSPTFGRHVAVELTEDNKRQFFIPRGFAHGFAVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK + Y+ E + +AW D S+ I W L + +S KD P L++ F+Y+
Sbjct: 127 ATFQYKCDNPYAPESEGAIAWNDPSLGIDWRLAPEDV-VLSPKDSAHPLLSEAGELFDYN 185
>gi|330998420|ref|ZP_08322244.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paraprevotella xylaniphila
YIT 11841]
gi|329568526|gb|EGG50331.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paraprevotella xylaniphila
YIT 11841]
Length = 190
Score = 266 bits (682), Expect = 8e-70, Method: Composition-based stats.
Identities = 76/179 (42%), Positives = 108/179 (60%), Gaps = 2/179 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F D+RG+F +++S + L FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IEGVVIIEPRLFNDARGYFFESFSQRDFDRLVRTVHFVQDNESKSS-YGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLVR I G + D+AVDIR+ SPT+G V++E++ N Q +IP GFAHGF L
Sbjct: 67 YAQSKLVRVIKGAVLDVAVDIRKGSPTFGQHVAVELTEENHRQFFIPRGFAHGFSVLTPE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +FY+ + + +AW D + I W + + +SEKD+ P L + F+Y
Sbjct: 127 VIFQYKCDNFYAPQSEGALAWDDPDLGINWHIPSDKI-LLSEKDKRHPRLKDAEWLFDY 184
>gi|295110606|emb|CBL24559.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruminococcus obeum A2-162]
Length = 189
Score = 266 bits (682), Expect = 8e-70, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 100/176 (56%), Gaps = 2/176 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I ++++ F D RG+F +TY+ K G+ FVQDN S S G +RGLHFQ
Sbjct: 11 IEGLKVITPTVFGDERGYFMETYNYNDYKAAGIDMEFVQDNQS-SSRKGVLRGLHFQI-N 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q KLVR ++G +FD+AVD+R S TYG W + +SA N Q +IP FAHGF+ L
Sbjct: 69 YPQDKLVRVVSGEVFDVAVDLREGSATYGQWYGVLLSAENKKQFFIPKNFAHGFVVLSDT 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
E YK TDFY + G+A+ D I + WP+ + + +S+KDQ + +
Sbjct: 129 AEFAYKCTDFYHPNDEGGLAYNDPDIGVEWPIPEGMELILSDKDQKWGSFKEYTAN 184
>gi|29726031|gb|AAO88956.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]
Length = 175
Score = 266 bits (682), Expect = 8e-70, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 109/166 (65%), Gaps = 4/166 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ + F D RG+F ++++ + + G FVQDNHS S G +RGLH+Q
Sbjct: 7 KIPDVKIIEPKVFGDERGFFFESFNQQQFEAAVGYPVHFVQDNHSKS-TKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQAKLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 66 APHAQAKLVRCVVGEVFDVAVDIRKSSPTFGQWVGVHLSAENKRQLWIPEGFAHGFVTLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK T++YS + + + W D + I WP+ + S+KD
Sbjct: 126 ETAEFLYKTTNYYSPQCEGAIRWDDSKVGIEWPVEGVVNQ--SQKD 169
>gi|307293848|ref|ZP_07573692.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingobium chlorophenolicum
L-1]
gi|306879999|gb|EFN11216.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingobium chlorophenolicum
L-1]
Length = 181
Score = 266 bits (682), Expect = 8e-70, Method: Composition-based stats.
Identities = 77/175 (44%), Positives = 111/175 (63%), Gaps = 3/175 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ + F D RG+F +++++ +E GL FVQDNHS S G +RGLHFQ P
Sbjct: 8 IPDLLIIEPKVFGDDRGFFMESWNADRFREQGLDLTFVQDNHSRSAK-GVLRGLHFQN-P 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR AGR++D+AVD+RR+S +G WV +E+SA N ++P GFAHGF+TLE
Sbjct: 66 NPQGKLVRVTAGRVWDVAVDLRRSSRHFGKWVGVELSAENRRMFWVPPGFAHGFLTLEDG 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
T+ +YK T Y H+ + W D ++ + WPL D I P +S KD L +I++
Sbjct: 126 TDFLYKCTGRYDPSHEHSLLWNDPTVGVDWPL-DGIEPQLSGKDVAGKPLAEIEA 179
>gi|114563991|ref|YP_751505.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella frigidimarina
NCIMB 400]
gi|114335284|gb|ABI72666.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella frigidimarina
NCIMB 400]
Length = 182
Score = 266 bits (682), Expect = 9e-70, Method: Composition-based stats.
Identities = 76/167 (45%), Positives = 107/167 (64%), Gaps = 6/167 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ F D RG+F +T+S + +EL G FVQDNHS S G +RGLH+Q
Sbjct: 8 IADVKIIEPAVFGDERGFFMETWSQQKFEELVTGKPTKFVQDNHSKS-KKGILRGLHYQT 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR ++G +FD+AVDIR+ SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 67 KN-TQGKLVRVVSGEVFDVAVDIRKGSPTFGQWVGVYLSAENKRQLWVPEGFAHGFYVTS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E +YK TD+Y+ + + +AW D I I WP+ +T P +SEKD+
Sbjct: 126 EEAEFVYKCTDYYNPKAELSIAWNDSDIGIKWPISNT--PLLSEKDK 170
>gi|224369618|ref|YP_002603782.1| RfbC1 [Desulfobacterium autotrophicum HRM2]
gi|223692335|gb|ACN15618.1| RfbC1 [Desulfobacterium autotrophicum HRM2]
Length = 182
Score = 266 bits (682), Expect = 9e-70, Method: Composition-based stats.
Identities = 72/176 (40%), Positives = 103/176 (58%), Gaps = 2/176 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V ++ + F D RG+F +T+ KE FVQDNHS S +RGLH+Q
Sbjct: 6 LSIPEVVLITPQVFGDHRGFFMETFRDDEFKENVAHATFVQDNHSKSTQ-NILRGLHYQI 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+ Q KLVR I+G +FD+AVDIR++SP +G W +SA N ++IP GFAHGF L
Sbjct: 65 K-HPQGKLVRVISGEVFDVAVDIRKSSPFFGRWSGATLSAENKNMLWIPPGFAHGFYVLS 123
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E YK TD+Y+ EH+ + W D SI I WP++ +P +S+KD+ +
Sbjct: 124 NEAEFTYKCTDYYAPEHERSIRWDDPSIAIDWPIIHGTVPILSQKDKEGSTFGDAE 179
>gi|332877115|ref|ZP_08444866.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332685005|gb|EGJ57851.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 190
Score = 266 bits (682), Expect = 9e-70, Method: Composition-based stats.
Identities = 77/179 (43%), Positives = 110/179 (61%), Gaps = 2/179 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F D+RG+F +++S + L FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IEGVVIIEPRLFNDARGYFFESFSQRDFDRLVRTVHFVQDNESKSS-YGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLVR I G + D+AVDIR+ SPT+G V++E++ N Q +IP GFAHGF L
Sbjct: 67 YAQSKLVRVIKGAVLDVAVDIRKGSPTFGQHVAVELTEENHRQFFIPRGFAHGFSVLSPE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +FY+ + + +AW D +DI W + + +SEKD++ P L + F+Y
Sbjct: 127 VIFQYKCDNFYAPQSEGALAWDDPDLDINWRIPSDKI-ILSEKDKHHPRLKDAEWLFDY 184
>gi|256831149|ref|YP_003159877.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfomicrobium baculatum
DSM 4028]
gi|256580325|gb|ACU91461.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfomicrobium baculatum
DSM 4028]
Length = 187
Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats.
Identities = 87/183 (47%), Positives = 114/183 (62%), Gaps = 3/183 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +LK + F D RG+F +TYS + L GL FVQDN +FS G +RGLHFQ P
Sbjct: 7 EIPGVLVLKPKVFGDHRGFFCETYSRRQLIAHGLDVDFVQDNEAFSAQAGVLRGLHFQTP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P QAKLVR G ++D+ VD+R SPT+G W +SA N LQ++IP G AHG+MTLE
Sbjct: 67 PMTQAKLVRVGRGAVYDVVVDLRTGSPTFGRWQGFTLSAANFLQLFIPAGLAHGYMTLES 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+T+ +YKV +YS EHD G++ D + I WP + P +S+KD LP L SPF
Sbjct: 127 DTQFLYKVDQYYSPEHDGGISCLDPVLGIDWP---DLPPIMSDKDVRLPCLADFSSPFRM 183
Query: 182 DGL 184
+G
Sbjct: 184 EGA 186
>gi|297205907|ref|ZP_06923302.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus jensenii
JV-V16]
gi|297149033|gb|EFH29331.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus jensenii
JV-V16]
Length = 193
Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats.
Identities = 75/182 (41%), Positives = 109/182 (59%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N+ V+I+ F D RG+F++TYS + K G+ F+QDN S S G +RGLHFQR
Sbjct: 10 NLQDVKIITPAVFGDHRGFFTETYSDRDFKAAGINFNFIQDNQSLSTQAGVLRGLHFQRG 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R G + D+ VD+R+ SPTY W +S +N Q+ +P GFAHGF+TL
Sbjct: 70 KAAQTKLIRVATGAVLDVIVDLRKGSPTYKQWEGYILSESNHRQLLVPRGFAHGFVTLTD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID--SPF 179
N +YK ++Y+ E D G++++ ++I WP+ D SEKD N P L + + +PF
Sbjct: 130 NVNFLYKCDNYYNAEADGGISFKTPELNIDWPI-DLDKAITSEKDANQPTLTEFEKDNPF 188
Query: 180 EY 181
Y
Sbjct: 189 VY 190
>gi|224535807|ref|ZP_03676346.1| hypothetical protein BACCELL_00671 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522530|gb|EEF91635.1| hypothetical protein BACCELL_00671 [Bacteroides cellulosilyticus
DSM 14838]
Length = 190
Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats.
Identities = 81/181 (44%), Positives = 111/181 (61%), Gaps = 2/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V I++ R F D RG+F +++S E + FVQDN S S G +RGLHFQ+
Sbjct: 7 EIDGVVIIEPRIFCDERGYFFESFSQLEFDEKVMPINFVQDNESMSS-YGVMRGLHFQKM 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY Q+KLVRC+ G + D+AVDIR+ SPTYG V++E+S +N Q +IP GFAHGF L
Sbjct: 66 PYTQSKLVRCVKGAVLDVAVDIRKGSPTYGQHVAVELSEDNHRQFFIPRGFAHGFSVLTE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +FY+ + D G+ D S+ I W + T +SEKD P L + DSPF+Y
Sbjct: 126 IAVFQYKCDNFYAPQADGGIQLIDGSLGIDWRIP-TNKVILSEKDLKHPLLAEYDSPFDY 184
Query: 182 D 182
+
Sbjct: 185 N 185
>gi|83582768|ref|YP_425074.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodospirillum rubrum ATCC
11170]
gi|83578084|gb|ABC24634.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodospirillum rubrum ATCC
11170]
Length = 188
Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats.
Identities = 90/181 (49%), Positives = 120/181 (66%), Gaps = 1/181 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V+IL+ KF D RG+FS+TY+ L E+G+ F+QDNHSFS GT+RGLHFQ
Sbjct: 8 LDIAEVKILRPAKFGDDRGFFSETYNKVALAEVGITLEFIQDNHSFSAKAGTVRGLHFQT 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KL+R + G +FD+AVD+R SPTYG VS ISA QI IP GFAHG T+E
Sbjct: 68 PPFAQDKLIRVVRGALFDVAVDLRVGSPTYGQSVSAVISAAAWNQILIPAGFAHGLCTIE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+TEV+YKV+ YS +HD G+ W D ++ I WP+ +S+KD P L + + F
Sbjct: 128 PDTEVLYKVSAPYSPDHDKGLLWNDPALGIEWPVSPGA-AILSDKDARQPVLADLPAYFT 186
Query: 181 Y 181
Y
Sbjct: 187 Y 187
>gi|319957143|ref|YP_004168406.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Nitratifractor salsuginis DSM
16511]
gi|319419547|gb|ADV46657.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitratifractor salsuginis DSM
16511]
Length = 191
Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats.
Identities = 84/181 (46%), Positives = 116/181 (64%), Gaps = 3/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I++ + D RG+F +TY + L+E LG + F QDN S S G +RGLH+Q
Sbjct: 7 DIPDVIIVEPKIHGDERGYFVETYRADKLEEFLGYKINFCQDNESKSS-YGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVR I G++ D+AVDIR++SPT+G +V++E+S N Q+ IP GFAHGF+ LE
Sbjct: 66 PPHAQTKLVRVIKGKVLDVAVDIRKSSPTFGQYVAVELSEENKKQLLIPRGFAHGFLVLE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T YKV +YS E D G+A+ D I I W + L +S KD+ P L+ D FE
Sbjct: 126 DDTVFAYKVDSYYSPECDRGIAFDDPEIGIDWRIPHDKL-ILSAKDKAQPKLSDTDDLFE 184
Query: 181 Y 181
Y
Sbjct: 185 Y 185
>gi|307303497|ref|ZP_07583251.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium meliloti
BL225C]
gi|306902888|gb|EFN33480.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium meliloti
BL225C]
Length = 187
Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats.
Identities = 88/183 (48%), Positives = 122/183 (66%), Gaps = 2/183 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ ++ V + R+ D RG+FS+TY+++ L G+ +FVQDNHS+S GT+RGLH+Q
Sbjct: 7 LGLDGVLEIVPRRLGDERGFFSETYNAETLAAHGVAAIFVQDNHSYSAAAGTLRGLHYQL 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP AQAKLVR + GR+FD+ VDIR+ SPT+ WV+LE+SA QI +P GFAHG +TLE
Sbjct: 67 PPKAQAKLVRVVRGRVFDVVVDIRKGSPTFAKWVALELSAEKWNQILVPVGFAHGLVTLE 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
TEV+YKVT+ YS EH+ + + D I I WP L +S KD+N P L++ FE
Sbjct: 127 PETEVLYKVTEHYSAEHERSIRYDDPEIGIGWPAATDRL-QLSAKDRNAPLLHE-SILFE 184
Query: 181 YDG 183
+
Sbjct: 185 FTA 187
>gi|34499468|ref|NP_903683.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Chromobacterium violaceum
ATCC 12472]
gi|34105320|gb|AAQ61675.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Chromobacterium violaceum
ATCC 12472]
Length = 180
Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats.
Identities = 75/173 (43%), Positives = 111/173 (64%), Gaps = 4/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ V+I++ + F D RG+F ++++ + + +G FVQDNHS S +RGLH+Q
Sbjct: 7 EISAVKIIEPQIFGDERGFFFESFNQQRFEQAVGHAVDFVQDNHSRSGK-NVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ Q KLVR ++G +FD+AVDIR S T+G WV +E+SA N Q++IP GFAHGF+TL
Sbjct: 66 DPHPQGKLVRVVSGAVFDVAVDIRPGSETFGQWVGVELSAANKRQLWIPAGFAHGFLTLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ E +YK TD++ E + +AW D + I WPL D P++S KDQ +
Sbjct: 126 DDVEFLYKTTDYWHPELERTLAWDDPDLAIAWPLSDA--PTLSAKDQTGASFS 176
>gi|330994213|ref|ZP_08318141.1| dTDP-4-dehydrorhamnose 3-5-epimerase [Gluconacetobacter sp. SXCC-1]
gi|329758680|gb|EGG75196.1| dTDP-4-dehydrorhamnose 3-5-epimerase [Gluconacetobacter sp. SXCC-1]
Length = 189
Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats.
Identities = 86/179 (48%), Positives = 112/179 (62%), Gaps = 1/179 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI + +L +FED RG+F++TY++ LKE+G+ + FVQDNHS S G +RGLH Q P
Sbjct: 7 NIKGLVLLTPPRFEDDRGYFTETYNAARLKEIGITEPFVQDNHSLSRQRGVVRGLHCQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVRC G I+D+ VDIR SPT+G WV +SA NG Q++IP GF HGF TL
Sbjct: 67 PHAQGKLVRCTRGSIWDVGVDIRAGSPTFGQWVGETLSAENGAQLWIPAGFLHGFCTLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
N EV YK TDF++ E + V W D + I WP+ VS KD + +D F
Sbjct: 127 NAEVQYKCTDFWNRECERSVRWDDPLLAIDWPVAAG-EAIVSAKDAQALAFSSVDDWFT 184
>gi|316935627|ref|YP_004110609.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
DX-1]
gi|315603341|gb|ADU45876.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
DX-1]
Length = 184
Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats.
Identities = 95/180 (52%), Positives = 123/180 (68%), Gaps = 1/180 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V++L R+F D RGWFS++Y+ K L + + FVQDNHS+S GTIRG HFQ
Sbjct: 6 LDIPGVKLLSPRRFSDDRGWFSESYNQKTLAQFDIHWQFVQDNHSYSKHAGTIRGFHFQA 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVRC+ G I DIAVD+R SPTY WV+ E+SA NG Q+++P GFAH F+TL+
Sbjct: 66 PPHAQDKLVRCVRGSIVDIAVDLRAGSPTYAKWVAAELSAENGEQLFVPVGFAHAFITLQ 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+TEV+YKVT FY+ E D GV W D +I W L P +S KD LP L I++PF
Sbjct: 126 PDTEVLYKVTSFYAPESDGGVRWDDPTIGFPWKLPQGA-PHLSAKDAKLPRLQDIETPFR 184
>gi|262374524|ref|ZP_06067798.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acinetobacter junii SH205]
gi|262310520|gb|EEY91610.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acinetobacter junii SH205]
Length = 191
Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats.
Identities = 77/181 (42%), Positives = 111/181 (61%), Gaps = 6/181 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-----DVFVQDNHSFSFDCGTIRGL 56
I + IL+ + F D RGWF ++++ K + L+ FVQDNHSFS G +RGL
Sbjct: 7 KIKGLLILEPKVFGDDRGWFMESFNQKSFESALLERGMDIPQFVQDNHSFS-QKGVLRGL 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H+Q P AQ KLVR + GR +D+AVDIR+NSPT+G WV +E++ N Q +IP GFAHGF
Sbjct: 66 HYQLNPCAQGKLVRVVQGRAWDVAVDIRQNSPTFGEWVGIELTGENHRQFWIPAGFAHGF 125
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ LE NT+ +YK T++YS E + + W D I WP+ + +++KD+ P
Sbjct: 126 IALEDNTQFLYKTTNYYSKECERSIVWNDVDFAIEWPIESGLELKLTDKDKLAPAFKDAK 185
Query: 177 S 177
+
Sbjct: 186 T 186
>gi|13476272|ref|NP_107842.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Mesorhizobium loti
MAFF303099]
gi|14027033|dbj|BAB53987.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Mesorhizobium loti
MAFF303099]
Length = 183
Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats.
Identities = 85/176 (48%), Positives = 115/176 (65%), Gaps = 1/176 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I+ V + ++ D+RG+F +TY+++ + G+ VFVQDNHS+S G +RGLH+Q
Sbjct: 6 LGIDGVLEIVPKRHGDARGFFMETYNAERFSQAGIDLVFVQDNHSYSATAGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KL+R I G I D+AVDIRR S T+G WV+ EISA G QI +P GFAHGF+TL
Sbjct: 66 EPRAQDKLLRVIRGSILDVAVDIRRGSKTFGKWVACEISAEKGNQILVPKGFAHGFVTLV 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+TEV+YKVTD YS EHD V + D I I WP + +S+KD P L + +
Sbjct: 126 PDTEVLYKVTDTYSPEHDRSVRFDDPVIGIEWPSVAGGF-QLSDKDLKAPVLAEAE 180
>gi|89068412|ref|ZP_01155815.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Oceanicola granulosus
HTCC2516]
gi|89046066|gb|EAR52125.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Oceanicola granulosus
HTCC2516]
Length = 185
Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats.
Identities = 80/178 (44%), Positives = 117/178 (65%), Gaps = 1/178 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V IL+ R+F D RGWF ++++ + L+ G++ FVQDNHS+S GT+R LH+Q PP
Sbjct: 8 LPGVLILEPRRFGDDRGWFMESWNRETLRGHGIEIDFVQDNHSYSAPKGTVRALHYQSPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQAKLVR G + D+AVD RR SPTYG V++++SA NG Q+++P GF HGF TL +
Sbjct: 68 HAQAKLVRVARGTVRDVAVDARRGSPTYGRHVAVDLSAENGRQLFVPAGFLHGFATLTPD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+++YK +D Y+ + D VAW D + I W + D + ++S KD+ P SPF
Sbjct: 128 VDLLYKCSDIYAPDCDGAVAWDDPDLGIDWGI-DPVTATLSNKDRAAPQFADWTSPFT 184
>gi|258517198|ref|YP_003193420.1| dTDP-4-dehydrorhamnose reductase [Desulfotomaculum acetoxidans DSM
771]
gi|257780903|gb|ACV64797.1| dTDP-4-dehydrorhamnose reductase [Desulfotomaculum acetoxidans DSM
771]
Length = 461
Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats.
Identities = 76/178 (42%), Positives = 107/178 (60%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N + +++T D+RGWF++TY+ G+ FVQDN S+S GT+RG+HFQ
Sbjct: 7 NFKGLFVIETNVHGDNRGWFTETYTKSKFAAQGIDTDFVQDNQSYSAQKGTLRGIHFQTN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ K++RC G I D VD+R+ S TY W S+E+SA N Q+YIP GF H F+T+
Sbjct: 67 PMAQTKMIRCTRGAIIDTVVDLRKGSDTYKQWYSIELSAENKKQMYIPKGFGHAFLTITE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ EV YKV ++YS E D + + D I I W + + P +S+KD N P L D+ F
Sbjct: 127 DVEVQYKVDEYYSKECDRSIKFNDPEIGIDWGIEN---PVLSQKDLNAPLLKDSDADF 181
>gi|16588697|gb|AAL26875.1|AF315583_4 dTDP-6-deoxy-D-glucose-3,5-epimerase [Acinetobacter calcoaceticus]
Length = 186
Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats.
Identities = 81/172 (47%), Positives = 109/172 (63%), Gaps = 6/172 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLK----ELGLQDV-FVQDNHSFSFDCGTIRGLH 57
I + IL F D RGWF ++++ + ELGL FVQDNHS S G +RGLH
Sbjct: 8 IEGLLILHPNVFGDDRGWFMESFNQQRFAQALEELGLSVPTFVQDNHSLS-QKGVLRGLH 66
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
+Q PYAQ KLVR + GR++D+AVDIR +S TYG WV +E+SA N +IP GFAHGF+
Sbjct: 67 YQNAPYAQGKLVRVVQGRVWDVAVDIRPDSKTYGEWVGVELSAENKTMFWIPEGFAHGFI 126
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
+LE NT+ +YK T++Y+ E + + W D ++ I WPL VS+KDQ
Sbjct: 127 SLEDNTQFLYKTTNYYNKESEGAIIWNDPTLAIDWPLAKVDEVLVSDKDQVA 178
>gi|331647689|ref|ZP_08348781.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli M605]
gi|330911875|gb|EGH40385.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli AA86]
gi|331043413|gb|EGI15551.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli M605]
Length = 179
Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats.
Identities = 79/173 (45%), Positives = 113/173 (65%), Gaps = 5/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFFESFNQKIFEEAVGRKVEFVQDNHSKS-RKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+TL+
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLTLK 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
NTE++YK T +YS E++ + W D+ + I WP + +S KD
Sbjct: 126 DNTEILYKTTSYYSPEYERSIIWNDEDLVIKWPNDPCV---ISHKDSLAQSFA 175
>gi|114321467|ref|YP_743150.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alkalilimnicola ehrlichii
MLHE-1]
gi|114227861|gb|ABI57660.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 182
Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats.
Identities = 75/174 (43%), Positives = 102/174 (58%), Gaps = 2/174 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V ++K F D RG+F +T+ + E G+ FVQDNHS S GT+RGLH+Q
Sbjct: 8 IPDVILVKPDVFGDERGFFMETWQRRKFAEGGIDHDFVQDNHSRSVK-GTLRGLHYQIRQ 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR AG +FD+AVD+RR SPT+G W +SA+N +++P GFAHGF
Sbjct: 67 P-QGKLVRVTAGSVFDVAVDLRRGSPTFGQWAGEHLSADNHHMLWVPPGFAHGFYVTSET 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ YK +D+Y+ EH+ + W D + I WPL D P VSEKD+ Q +
Sbjct: 126 ADFQYKCSDYYAPEHEHCIRWDDPELGIDWPLSDNGAPLVSEKDRQGLAFAQAE 179
>gi|308187468|ref|YP_003931599.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pantoea vagans C9-1]
gi|308057978|gb|ADO10150.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pantoea vagans C9-1]
Length = 181
Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats.
Identities = 81/176 (46%), Positives = 112/176 (63%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I + F D RG+F +++S K +G FVQDNHS S G +RGLH+Q
Sbjct: 7 KIPDVKIFEPAVFGDERGFFFESFSQKKFDNAVGRHVEFVQDNHSKSSK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC+AG +FD+AVDIR+ SP +G WV +E+S+ N Q++IP GFAHGF+TL
Sbjct: 66 NPFAQGKLVRCVAGAVFDVAVDIRKQSPFFGQWVGVELSSENKRQLWIPEGFAHGFLTLI 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
NTE +YK T+FYS E + + W D I+I WP + +SEKD+ + +
Sbjct: 126 DNTEFVYKTTNFYSKESERSIIWNDPLINIEWPEKE---VLLSEKDKLASLFCEAE 178
>gi|298480819|ref|ZP_06999014.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D22]
gi|298272842|gb|EFI14408.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D22]
Length = 190
Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats.
Identities = 81/180 (45%), Positives = 109/180 (60%), Gaps = 2/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI V I++ R F D RG+F +++S + E FVQDN S S G +RGLHFQ
Sbjct: 7 NIEGVVIIEPRLFMDDRGYFFESFSQREFDEKVHPVKFVQDNESMSS-YGVMRGLHFQTM 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY Q+KLVRC+ G + D+AVDIR+ SPTYG V++E++ N Q +IP GFAHGF L
Sbjct: 66 PYCQSKLVRCVEGAVLDVAVDIRKGSPTYGQHVAVELTEENHRQFFIPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +FY+ +HD G++ D+S+ I W + T +SEKD P L +SPF Y
Sbjct: 126 TAVFQYKCDNFYAPQHDGGISILDESLGICWRMP-TGKAILSEKDTKHPLLKDFESPFLY 184
>gi|96669|pir||S23343 hypothetical protein 7.0 - Salmonella choleraesuis
gi|46986|emb|CAA43075.1| rmlC [Salmonella enterica]
Length = 176
Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats.
Identities = 81/172 (47%), Positives = 112/172 (65%), Gaps = 5/172 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFSDERGFFMESFNQKVFEEAVGRKIEFVQDNHSKS-TKGVLRGLHYQV 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRCIAG +FD+AVDIR +S T+G WV + IS+ N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCIAGEVFDVAVDIRNDSETFGKWVGVNISSENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
E +YK +++YS EH+ G+ W D I+ITW + P +S KD+ L
Sbjct: 126 EEAEFVYKTSNYYSGEHERGIIWNDPDINITWGIDS---PILSLKDKIHKGL 174
>gi|46015557|pdb|1RTV|A Chain A, Rmlc (Dtdp-6-Deoxy-D-Xylo-4-Hexulose 3,5-Epimerase)
Crystal Structure From Pseudomonas Aeruginosa, Apo
Structure
gi|112491446|pdb|2IXJ|A Chain A, Rmlc P Aeruginosa Native
gi|118138550|pdb|2IXH|A Chain A, Rmlc P Aeruginosa With Dtdp-Rhamnose
gi|118138551|pdb|2IXH|B Chain B, Rmlc P Aeruginosa With Dtdp-Rhamnose
Length = 184
Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats.
Identities = 79/177 (44%), Positives = 106/177 (59%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + R F D RG+F ++Y+ + +E G FVQDNHS S G +RGLH+Q
Sbjct: 9 LAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSAR-GVLRGLHYQ 67
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
AQ KLVR G +FD+AVD+RR SPT+G WV +SA N Q++IP GFAHGF+ L
Sbjct: 68 IR-QAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVL 126
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TDF++ EH+ + W D + I WPL D P +SEKD+ D
Sbjct: 127 SEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWPLQDA--PLLSEKDRQGKAFADAD 181
>gi|112491444|pdb|2IXI|A Chain A, Rmlc P Aeruginosa With Dtdp-Xylose
gi|112491445|pdb|2IXI|B Chain B, Rmlc P Aeruginosa With Dtdp-Xylose
gi|114794832|pdb|2IXK|A Chain A, Rmlc P Aeruginosa With Dtdp-4-Keto Rhamnnose (The Product
Of The Reaction)
gi|114794833|pdb|2IXK|B Chain B, Rmlc P Aeruginosa With Dtdp-4-Keto Rhamnnose (The Product
Of The Reaction)
Length = 184
Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats.
Identities = 79/177 (44%), Positives = 106/177 (59%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + R F D RG+F ++Y+ + +E G FVQDNHS S G +RGLH+Q
Sbjct: 9 LAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSAR-GVLRGLHYQ 67
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
AQ KLVR G +FD+AVD+RR SPT+G WV +SA N Q++IP GFAHGF+ L
Sbjct: 68 IR-QAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVL 126
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TDF++ EH+ + W D + I WPL D P +SEKD+ D
Sbjct: 127 SEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWPLQDA--PLLSEKDRQGKAFADAD 181
>gi|317055130|ref|YP_004103597.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruminococcus albus 7]
gi|315447399|gb|ADU20963.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruminococcus albus 7]
Length = 183
Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats.
Identities = 76/178 (42%), Positives = 99/178 (55%), Gaps = 4/178 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I+ + + D RG+F +TY K GL FVQDN S S G +RGLHFQ+
Sbjct: 10 KIKGVYIIDVKTYGDERGYFMETYKEDDFKAAGLDYKFVQDNQS-SSRKGVLRGLHFQKT 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ QAKLVR + G +FD+AVD+R+ S TYG WV +S N Q IP GFAHGF+ +
Sbjct: 69 -HPQAKLVRVLKGEVFDVAVDLRKGSETYGQWVGAVLSEENKRQFMIPRGFAHGFLVMSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
E YK D Y E + G+ W D +I I W D +SEKD++ P L + F
Sbjct: 128 YAEFAYKCDDLYHPEDEGGIMWNDPAIGIEW--KDVGELILSEKDKHHPSLAESKIEF 183
>gi|94497766|ref|ZP_01304333.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingomonas sp. SKA58]
gi|94422815|gb|EAT07849.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingomonas sp. SKA58]
Length = 181
Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats.
Identities = 79/175 (45%), Positives = 109/175 (62%), Gaps = 3/175 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I I++ R F D RG+F ++Y++ K GL FVQDNHS S G +RGLHFQ P
Sbjct: 8 IPGPVIIEPRVFGDERGFFYESYNAGAFKAAGLDLNFVQDNHSKSAK-GVLRGLHFQN-P 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR AGR++D+AVDIRR+SP +G WV +E+SA N ++P GFAHGF+ LE
Sbjct: 66 NPQGKLVRVTAGRVWDVAVDIRRSSPHFGKWVGVELSAANKRMFWVPEGFAHGFIALEDG 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
TE +YK T Y + + W D ++ I WPL + + P +S KD L++I++
Sbjct: 126 TEFLYKCTATYDPSAEHSLMWNDPAVGIEWPL-EGLEPQLSGKDAQGKALSEIEA 179
>gi|29346748|ref|NP_810251.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides thetaiotaomicron
VPI-5482]
gi|29338645|gb|AAO76445.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides thetaiotaomicron
VPI-5482]
Length = 182
Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats.
Identities = 77/178 (43%), Positives = 109/178 (61%), Gaps = 2/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI V I++ R F+D RG+F +++S + +E + FVQDN S S G +RGLHFQ+P
Sbjct: 7 NIEGVVIIEPRIFKDDRGYFFESFSQREFEEKVCKTTFVQDNESKSS-YGVLRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR I G + D+AVDIR+ SPT+G +VS+E++ N Q +IP GFAHGF L
Sbjct: 66 PFAQSKLVRVIKGAVLDVAVDIRKGSPTFGQYVSVELTGENHRQFFIPRGFAHGFSVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
YK +FYS + + +AW D ++I W + +SEKD P L + F
Sbjct: 126 EVIFQYKCDNFYSPQSEGAIAWNDPDLNIDWRIP-AEKVVLSEKDSKHPRLKDWQNMF 182
>gi|146280479|ref|YP_001170632.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas stutzeri A1501]
gi|14717005|emb|CAC44167.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas stutzeri]
gi|145568684|gb|ABP77790.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas stutzeri A1501]
Length = 181
Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats.
Identities = 73/176 (41%), Positives = 109/176 (61%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I++ + F D RG+F +++++ + GL+ FVQDNHS S G +RGLH+Q
Sbjct: 7 SIPDVLIIEPKVFGDERGFFYESFNAAAFEAATGLKRQFVQDNHSKS-QRGVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR +AG +FD+AVD+R++SP++G W +SA N Q++IP GFAHGF+ L
Sbjct: 66 QQP-QGKLVRVVAGEVFDVAVDLRKSSPSFGRWFGTHLSAQNQRQLWIPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+Y+ EH+ + W D + I WPL + P +S KD L +
Sbjct: 125 ESAEFLYKTTDYYAPEHERSLLWNDPELGIEWPLDEA--PQLSAKDIAGKLLRDAE 178
>gi|162149146|ref|YP_001603607.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gluconacetobacter
diazotrophicus PAl 5]
gi|209545110|ref|YP_002277339.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gluconacetobacter
diazotrophicus PAl 5]
gi|161787723|emb|CAP57319.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gluconacetobacter
diazotrophicus PAl 5]
gi|209532787|gb|ACI52724.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gluconacetobacter
diazotrophicus PAl 5]
Length = 183
Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats.
Identities = 80/179 (44%), Positives = 110/179 (61%), Gaps = 1/179 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I + +L R+F D RG+FS+TY+ + + + G+ FVQDNHS S G IRGLH Q
Sbjct: 6 LSIPDILLLTPRRFADERGFFSETYNLRTMAQAGIDVAFVQDNHSLSRQRGVIRGLHCQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVRC G I+D+AVD R+ SP++G WV+ E+S NG Q++IP GF HGF TL
Sbjct: 66 PPHAQGKLVRCTRGAIWDVAVDARQGSPSFGRWVAAELSEENGSQLWIPPGFLHGFCTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
N EV YK TD + + + V W + I WP+ +SEKD P + + F
Sbjct: 126 ENAEVQYKCTDLWDRDCERSVRWNSPDLAIAWPVAPE-DAVLSEKDAAAPDFSTVRDWF 183
>gi|224540703|ref|ZP_03681242.1| hypothetical protein BACCELL_05617 [Bacteroides cellulosilyticus
DSM 14838]
gi|224517670|gb|EEF86775.1| hypothetical protein BACCELL_05617 [Bacteroides cellulosilyticus
DSM 14838]
Length = 190
Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats.
Identities = 81/180 (45%), Positives = 116/180 (64%), Gaps = 2/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N+ + I++ R F+D RG+F +++S + +E + FVQDN S S G +RGLHFQ+P
Sbjct: 7 NVEGLVIIEPRLFKDERGYFFESFSQREFEEKVHKVNFVQDNESMSS-YGVLRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR + GR+ D+AVDIR+ SPTYG V++E+S +N LQ +IP GFAHGF L
Sbjct: 66 PFAQSKLVRVVKGRVLDVAVDIRKGSPTYGEHVAVELSEDNHLQFFIPKGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK ++Y+ + D G++ D+ I I W + T +SEKD P L +SPFEY
Sbjct: 126 VAVFQYKCDNYYAPQADGGISILDEGIGIDWKIP-TDKAILSEKDTKHPLLRDFESPFEY 184
>gi|189092408|gb|ACD75808.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli]
gi|288816217|gb|ADC54940.1| RmlC [Escherichia coli]
gi|315285630|gb|EFU45072.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 110-3]
gi|323956203|gb|EGB51954.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli H263]
Length = 185
Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats.
Identities = 74/175 (42%), Positives = 112/175 (64%), Gaps = 3/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I + +L+ + F D RG+F ++Y+ + +G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDLIVLEPKVFSDERGFFMESYNQIEFEKAIGRHVNFVQDNHSKSSK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQAKLVRC+ G++FD+AVD+R+NSPT+ W + +SA N Q++IP GFAHGF+
Sbjct: 66 APYAQAKLVRCVVGQVFDVAVDLRKNSPTFKKWFGITLSAENKRQLWIPEGFAHGFLVTS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E IYK T++Y+ H + + D ++I WP + L S+S+KDQ +++
Sbjct: 126 DEAEFIYKTTNYYAPGHQQAIIYNDPILNIDWPFCSSAL-SLSQKDQEAKLFSEL 179
>gi|22759341|gb|AAC70776.2| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase [Klebsiella pneumoniae]
Length = 184
Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats.
Identities = 82/176 (46%), Positives = 112/176 (63%), Gaps = 2/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I + R F D+RG+F +++SSK+ E G Q FVQDNHS S +RGLH+Q
Sbjct: 7 DIPDVLIFEPRVFGDARGFFFESFSSKVFNEAVGRQVEFVQDNHSQSQKR-VLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC+ G +FD+AVDIRR+SPT+G WV +SA N Q++IP GFAHGFM L
Sbjct: 66 DPHAQGKLVRCVEGEVFDVAVDIRRSSPTFGKWVGAVLSAENKRQLWIPEGFAHGFMALS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK T++Y+ + + + W D I I WP L + S+SEKD L +
Sbjct: 126 DTVQFVYKGTNYYAPQSERSIIWNDPEIRIDWPALSDCVLSLSEKDLRAHTLATAE 181
>gi|327478701|gb|AEA82011.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas stutzeri DSM
4166]
Length = 181
Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats.
Identities = 73/176 (41%), Positives = 109/176 (61%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I++ + F D RG+F +++++ + GL+ FVQDNHS S G +RGLH+Q
Sbjct: 7 SIPDVLIIEPKVFGDERGFFYESFNAAAFEAATGLKRQFVQDNHSKS-QRGVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR +AG +FD+AVD+R++SP++G W +SA N Q++IP GFAHGF+ L
Sbjct: 66 QQP-QGKLVRVVAGEVFDVAVDLRKSSPSFGRWFGTHLSAQNQRQLWIPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+Y+ EH+ + W D + I WP + P +S KDQ L +
Sbjct: 125 ESAEFLYKTTDYYAPEHERSLLWNDPELGIQWPFDEA--PQLSAKDQAGKLLRDAE 178
>gi|32456001|ref|NP_862003.1| rb128 [Ruegeria sp. PR1b]
gi|22726353|gb|AAN05149.1| RB128 [Ruegeria sp. PR1b]
Length = 184
Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats.
Identities = 93/180 (51%), Positives = 121/180 (67%), Gaps = 4/180 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V+IL ++F D+RG+FS++++ + + GL FVQDNHS S + GTIRGLHFQ PP
Sbjct: 8 LPGVKILTPQRFGDARGFFSESWNRQRMAAAGLDLDFVQDNHSMSAEVGTIRGLHFQAPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVRC G +FD+AVDIR+ SPTYG WV +E+SA NG QI +P GF HGF+T
Sbjct: 68 HAQDKLVRCGQGALFDVAVDIRKGSPTYGEWVGVELSAENGKQILVPKGFLHGFITRAPM 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
TEVIYK TD+Y+ + D GV W S I W T P +S KD P L ++DSPF +
Sbjct: 128 TEVIYKCTDYYAPDCDGGVRWD--SCGIDWGFDGT--PVLSGKDAVAPILAELDSPFTWK 183
>gi|153829546|ref|ZP_01982213.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae 623-39]
gi|29725982|gb|AAO88916.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]
gi|148874942|gb|EDL73077.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae 623-39]
Length = 181
Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 104/176 (59%), Gaps = 6/176 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPTVFGDERGFFMETWNQKRFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 TEN-TQGKLVRVVSGEVFDVAVDIRKDSPTFGKWVGVYLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ + + W D I I WP +P S KD L +
Sbjct: 125 SDEAEFVYKCTDYYNPTAEISLRWDDPDIGIEWP--SDEVPIRSLKDSMGKKLKDV 178
>gi|217978847|ref|YP_002362994.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylocella silvestris BL2]
gi|217504223|gb|ACK51632.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylocella silvestris BL2]
Length = 190
Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats.
Identities = 87/182 (47%), Positives = 115/182 (63%), Gaps = 1/182 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V +LK R+F D RG+F +TY+ + + G+ FVQDN SFS GTIRGLHFQ P
Sbjct: 7 DLPGVLVLKPRRFADQRGYFVETYNRRTFAKAGVDAQFVQDNQSFSAKAGTIRGLHFQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKLVR + G IFD+AVD+R SPT+G W+ ++A G Q+ IP GFAH F TLE
Sbjct: 67 PAAQAKLVRAVRGAIFDVAVDLRAGSPTFGRWIGETLTAGGGEQLLIPRGFAHAFCTLED 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ EV YKV DFY+ DSG+ W D + I WP+ + +S+KD L SPF +
Sbjct: 127 DVEVAYKVDDFYAPTCDSGLIWNDPDLKIEWPV-EASAAVLSDKDAKLGRFADFVSPFRF 185
Query: 182 DG 183
+
Sbjct: 186 EA 187
>gi|307318652|ref|ZP_07598085.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium meliloti AK83]
gi|306895679|gb|EFN26432.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium meliloti AK83]
Length = 187
Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats.
Identities = 87/183 (47%), Positives = 122/183 (66%), Gaps = 2/183 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ ++ V + R+ D RG+FS+TY+++ L G+ +FVQDNHS+S GT+RGLH+Q
Sbjct: 7 LGLDGVLEIVPRRLGDERGFFSETYNAETLAAHGVAAIFVQDNHSYSAAAGTLRGLHYQL 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP AQAKLVR + GR+FD+ VDIR+ SPT+ WV+LE+SA QI +P GFAHG +TLE
Sbjct: 67 PPKAQAKLVRVVRGRVFDVVVDIRKGSPTFAKWVALELSAEKWNQILVPVGFAHGLVTLE 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
TEV+YKV++ YS EH+ + + D I I WP L +S KD+N P L++ FE
Sbjct: 127 PETEVLYKVSEHYSAEHERSIRYDDPEIGIGWPAATDRL-QLSAKDRNAPLLHE-SILFE 184
Query: 181 YDG 183
+
Sbjct: 185 FTA 187
>gi|119384854|ref|YP_915910.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paracoccus denitrificans
PD1222]
gi|119374621|gb|ABL70214.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paracoccus denitrificans
PD1222]
Length = 193
Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats.
Identities = 94/183 (51%), Positives = 123/183 (67%), Gaps = 5/183 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQR 60
++ V +L R+F D RG+F +++S K L + GL FVQDNHS S GT+RGLHFQ
Sbjct: 7 SLPGVLVLVPRRFGDERGFFCESWSRKTLHDAGLDLPEFVQDNHSLSAAAGTLRGLHFQA 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVRC GR+FD+AVDIR+ SP+YG W E+S NG Q++IP GF HGF+T E
Sbjct: 67 PPHAQGKLVRCGRGRLFDVAVDIRKGSPSYGRWTGCELSFENGRQLWIPPGFLHGFVTRE 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+TE++YK TD+Y+ + D VAW SI I W + P +S KD P LN+ DSPF
Sbjct: 127 PDTEILYKCTDYYAPDCDGAVAWD--SIGIDWGVSGQ--PILSAKDAGAPVLNEFDSPFT 182
Query: 181 YDG 183
Y+G
Sbjct: 183 YEG 185
>gi|168481430|gb|ACA24909.1| RmlC [Shigella dysenteriae]
Length = 182
Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats.
Identities = 85/175 (48%), Positives = 113/175 (64%), Gaps = 3/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I++ + F D RG+F ++++ KL ++ FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPEVLIIEPQIFSDERGYFFESFNQKLFDDVVNRHVEFVQDNHSRSSK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQAKLVRCI G +FD+AVDIR SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 66 PPFAQAKLVRCIVGEVFDVAVDIRTMSPTFGHWVGVRLSAENKRQLWIPEGFAHGFLTLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
N E YK T+FY E ++G+ W D I+I WP D + +S KD LP L
Sbjct: 126 ENAEFAYKTTNFYCKEAEAGIIWNDPQINIKWP-EDNMEFLLSTKDVILPCLTDA 179
>gi|313673142|ref|YP_004051253.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Calditerrivibrio
nitroreducens DSM 19672]
gi|312939898|gb|ADR19090.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Calditerrivibrio
nitroreducens DSM 19672]
Length = 185
Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats.
Identities = 86/174 (49%), Positives = 114/174 (65%), Gaps = 2/174 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ + ++K + F D RG+F +TY K LG+ D FVQDNHS S GTIRGLHFQ+ P
Sbjct: 10 IDGLLVIKPQMFRDDRGFFMETYKESDFKSLGISDRFVQDNHSKS-KKGTIRGLHFQKQP 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVR G +D+AVDIR+ SPT+G W +LE+S N L ++IP GFAHGF+ LE +
Sbjct: 69 HAQGKLVRVTRGAAWDVAVDIRKGSPTFGKWYALELSGENNLMLWIPAGFAHGFLALEDD 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
TE++YK T Y D G+ W D I + WP L I +S+KD LP+L I+
Sbjct: 129 TELLYKCTAEYHAPSDGGIRWNDPIIGVKWPEL-GIPYIISQKDMQLPYLKDIE 181
>gi|300866607|ref|ZP_07111295.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oscillatoria sp. PCC 6506]
gi|300335379|emb|CBN56455.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oscillatoria sp. PCC 6506]
Length = 182
Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats.
Identities = 76/176 (43%), Positives = 108/176 (61%), Gaps = 4/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I++ R F D RG+F ++++ + E G++ FVQDNHS S +RGLH+Q
Sbjct: 7 EIPEVLIIEPRVFGDDRGFFFESFNHRAFAEKTGVKAEFVQDNHSKSAQ-NVLRGLHYQM 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR G IFD+AVDIR+NSPT+G WV +SA N Q+++P GFAHGF+ +
Sbjct: 66 QQP-QGKLVRVAMGEIFDVAVDIRKNSPTFGQWVGYLLSAENKRQLWVPAGFAHGFLVVS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EV+YK T++Y+ EH+ + W D + I WPL D P +S KD++ L +
Sbjct: 125 EVAEVLYKTTEYYAPEHERCILWNDPDLAIAWPLGD-ATPILSAKDRSGQTLKTAE 179
>gi|77456517|ref|YP_346022.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas fluorescens
Pf0-1]
gi|77380520|gb|ABA72033.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas fluorescens
Pf0-1]
Length = 193
Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats.
Identities = 73/176 (41%), Positives = 108/176 (61%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++ V I++ + F D RG+F +++++K ++ GL FVQDNHS S G +RGLH+Q
Sbjct: 19 DLPGVLIIEPKVFGDERGFFYESFNAKAFQDATGLDTQFVQDNHSRS-QKGVLRGLHYQL 77
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR AG + D+AVDIRR+SP +G WV++ +SA+N Q+++P GFAHGF+ L
Sbjct: 78 EN-TQGKLVRVTAGEVLDVAVDIRRSSPHFGKWVAVRLSADNHRQLWVPEGFAHGFVVLS 136
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ + + W D + I W L + P +S KDQ L D
Sbjct: 137 EFAEFLYKTTDYYNPSSERSIRWDDPDLGIDWQLDEA--PKLSAKDQAAALLKDAD 190
>gi|110833775|ref|YP_692634.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alcanivorax borkumensis SK2]
gi|110646886|emb|CAL16362.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Alcanivorax borkumensis SK2]
Length = 183
Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats.
Identities = 75/175 (42%), Positives = 105/175 (60%), Gaps = 3/175 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+++K + F D RG+F +T++++ E G+ FVQDNHS S T+RGLH+Q
Sbjct: 8 IPEVKLIKPKVFGDERGFFMETWNARAFAEAGIDATFVQDNHSRSVK-NTLRGLHYQIKQ 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVRC G +FD+AVD+R++SPT+G WV +S N Q+++P GFAHGF+ +
Sbjct: 67 P-QGKLVRCTRGEVFDVAVDLRKSSPTFGQWVGEILSEENQNQLWVPPGFAHGFLVMTET 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTI-LPSVSEKDQNLPFLNQID 176
+ YK TDFY+ EHD + W D I I WP P VS+KD L +
Sbjct: 126 ADFQYKCTDFYAPEHDRCIHWADSKIGIDWPFEPEARSPLVSQKDAAGARLLDAE 180
>gi|150006431|ref|YP_001301175.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides vulgatus ATCC
8482]
gi|237712178|ref|ZP_04542659.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 9_1_42FAA]
gi|237726325|ref|ZP_04556806.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D4]
gi|254881652|ref|ZP_05254362.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 4_3_47FAA]
gi|265751869|ref|ZP_06087662.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_1_33FAA]
gi|294777048|ref|ZP_06742506.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides vulgatus PC510]
gi|319643037|ref|ZP_07997670.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_1_40A]
gi|149934855|gb|ABR41553.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides vulgatus ATCC
8482]
gi|229434851|gb|EEO44928.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides dorei 5_1_36/D4]
gi|229453499|gb|EEO59220.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 9_1_42FAA]
gi|254834445|gb|EET14754.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 4_3_47FAA]
gi|263236661|gb|EEZ22131.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_1_33FAA]
gi|294449106|gb|EFG17648.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides vulgatus PC510]
gi|317385318|gb|EFV66264.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_1_40A]
Length = 189
Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats.
Identities = 75/180 (41%), Positives = 112/180 (62%), Gaps = 2/180 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V IL+ R F D+RG+F +++S + +E + FVQDN SFS G +RGLHFQ+PP
Sbjct: 8 IDGVFILEPRIFNDARGYFFESFSGREFEEKVCRTTFVQDNESFS-TYGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q+KLVR I G + D+AVDIR+ SPT+G V++E++ N Q +IP GFAHGF L
Sbjct: 67 FTQSKLVRVIKGAVLDVAVDIRKGSPTFGKHVAVELTGENHRQFFIPRGFAHGFAVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK +Y+ + + G+AW D + I W L + +S+KD+ P L + F+++
Sbjct: 127 VLFQYKCDHYYAPQSEGGIAWDDPDLGIDWRLPADKV-ILSDKDKKHPRLKDYQTDFDFN 185
>gi|299133409|ref|ZP_07026604.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Afipia sp. 1NLS2]
gi|298593546|gb|EFI53746.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Afipia sp. 1NLS2]
Length = 180
Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats.
Identities = 78/173 (45%), Positives = 114/173 (65%), Gaps = 3/173 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V +++ + F D+RG+F ++++ + +E FVQDN SFS G +RGLH+Q P
Sbjct: 8 LDGVMLIEPQVFHDTRGYFFESFNHQRFRESVADVPFVQDNQSFS-KKGVVRGLHYQIAP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLVR +AG IFD+AVDIRRNSP +G W + +SA+N Q+++P GFAHGF L
Sbjct: 67 KAQGKLVRVLAGEIFDVAVDIRRNSPQFGQWTGINLSADNKKQLWVPAGFAHGFQVLSET 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
EV+YK TD++S EH+ + W D ++ I WPL + P VS+KD + P L+
Sbjct: 127 AEVLYKTTDYWSAEHERAIRWNDPTLAIDWPLK--MNPVVSDKDNDAPLLSAA 177
>gi|306814843|ref|ZP_07449005.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli NC101]
gi|305852237|gb|EFM52689.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli NC101]
gi|323968167|gb|EGB63576.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli M863]
gi|327253165|gb|EGE64819.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli STEC_7v]
Length = 185
Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats.
Identities = 74/175 (42%), Positives = 113/175 (64%), Gaps = 3/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I + +L+ + F D RG+F ++Y+ ++ +G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDLIVLEPKVFSDERGFFMESYNQIEFEKTIGRHVNFVQDNHSKSSK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQAKLVRC+ G++FD+AVD+R+NSPT+ W + +SA N Q++IP GFAHGF+
Sbjct: 66 APYAQAKLVRCVVGQVFDVAVDLRKNSPTFKKWFGITLSAENKRQLWIPEGFAHGFLVTS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E IYK T++Y+ H + + D ++I WP + L S+S+KDQ +++
Sbjct: 126 DEAEFIYKTTNYYAPGHQQAIIYNDPILNIDWPFCSSAL-SLSQKDQEAKLFSEL 179
>gi|49081796|gb|AAT50298.1| PA5164 [synthetic construct]
Length = 182
Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats.
Identities = 79/177 (44%), Positives = 106/177 (59%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + R F D RG+F ++Y+ + +E G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSAR-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
AQ KLVR G +FD+AVD+RR SPT+G WV +SA N Q++IP GFAHGF+ L
Sbjct: 65 IR-QAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TDF++ EH+ + W D + I WPL D P +SEKD+ D
Sbjct: 124 SEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWPLQDA--PLLSEKDRQGKAFADAD 178
>gi|72132992|gb|AAZ66345.1| RmlC [Listonella anguillarum]
Length = 184
Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats.
Identities = 76/179 (42%), Positives = 112/179 (62%), Gaps = 9/179 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T++ + +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPTVFGDERGFFMETWNQQRFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 TEN-TQGKLVRVVSGEVFDVAVDIRKDSPTFGKWVGVHLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVE---HDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++Y+ E + + W D+SI+I WP + P +SEKD + L+ I
Sbjct: 125 SEEAEFVYKCTNYYNPEAEHDEHTLLWNDESINIDWP--NKTCPLLSEKDVHGKHLSDI 181
>gi|283852391|ref|ZP_06369661.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio sp. FW1012B]
gi|283572239|gb|EFC20229.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio sp. FW1012B]
Length = 185
Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats.
Identities = 83/180 (46%), Positives = 114/180 (63%), Gaps = 3/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++K R F D+RG+F +T+S K GL FVQDNH+ S G +RGLH+QRP
Sbjct: 7 GIPGLVVVKPRVFGDNRGFFLETHSRKAYAAAGLDYDFVQDNHARSGPRGVLRGLHYQRP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P QAKLV + G +FD+AVD+R SPTYG W +E++ +N L++ +P GFAHG++TL
Sbjct: 67 PNTQAKLVWVVRGAVFDVAVDLRVGSPTYGKWYGIELTEDNFLRLMVPRGFAHGYVTLTE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N E +YKV YS D+G+AW D I + WP+ +P +S+KD P L SPF Y
Sbjct: 127 NAEFMYKVDAPYSPADDAGIAWNDPDIGVAWPVD---VPVLSDKDARQPTLAAGGSPFVY 183
>gi|315299445|gb|EFU58696.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 16-3]
Length = 182
Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats.
Identities = 76/173 (43%), Positives = 110/173 (63%), Gaps = 3/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S +RG+H+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKS-KINVLRGMHYQT 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR I+G ++D+AVD+R S T+G WV +E+S NN Q++IP GFAHGF LE
Sbjct: 66 QN-TQGKLVRVISGSVYDVAVDLREKSKTFGKWVGVELSGNNKRQLWIPEGFAHGFYVLE 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
NTE +YK TD Y+ H+ + W D +I+I+WP++ P +SEKD N +
Sbjct: 125 ENTEFVYKCTDTYNPAHEHTLLWNDPTINISWPIIQNCKPIISEKDANGHLFS 177
>gi|184154573|ref|YP_001842913.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus fermentum IFO
3956]
gi|183225917|dbj|BAG26433.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus fermentum IFO
3956]
Length = 193
Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats.
Identities = 77/182 (42%), Positives = 110/182 (60%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+++ F D RG+F++TYS + KE G+ FVQDN S S G +RGLHFQR
Sbjct: 10 KLQDVKLITPAVFGDHRGFFTETYSDRDFKEAGINFDFVQDNQSLSAQAGVLRGLHFQRG 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ VD+R+ SPTY W +SA+N Q+ +P GFAHGF+TL
Sbjct: 70 RAAQTKLIRVVTGAVLDVIVDLRKGSPTYKQWEGYILSASNHRQLLVPRGFAHGFVTLTD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID--SPF 179
N +YK ++Y E D G++++ +DI WP+ D SEKD N P L + + +PF
Sbjct: 130 NVNFVYKCDNYYDAEADGGISFKTPELDIDWPI-DLDKAITSEKDANQPTLTEFEKDNPF 188
Query: 180 EY 181
Y
Sbjct: 189 VY 190
>gi|312115798|ref|YP_004013394.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodomicrobium vannielii ATCC
17100]
gi|311220927|gb|ADP72295.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodomicrobium vannielii ATCC
17100]
Length = 196
Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats.
Identities = 97/192 (50%), Positives = 133/192 (69%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V +++ R+FED RGWFS+TY+ + ++ GL+ FVQDNHS S + T+RGLHFQRPP+A
Sbjct: 4 EVLLIRPRRFEDDRGWFSETYNERNFRQAGLESRFVQDNHSLSREKYTLRGLHFQRPPFA 63
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q+KLVRC GRIFD+ VDIR SP++G W+S E+SA G Q+++P GF HGF+TL +TE
Sbjct: 64 QSKLVRCSKGRIFDVTVDIRIGSPSFGGWISTELSAEGGEQLFVPAGFLHGFLTLTPDTE 123
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGL 184
+IYKV+DFY D+GV W D I + W L + + P++S KD+ LP L IDSPF +
Sbjct: 124 IIYKVSDFYDGASDAGVRWDDPMIAVNWSLPEGVPPTLSAKDRALPLLAAIDSPFMFQPG 183
Query: 185 PLLSLNMERDLL 196
+ R+L
Sbjct: 184 DVPLTEAPRELR 195
>gi|156340233|ref|XP_001620391.1| hypothetical protein NEMVEDRAFT_v1g231483 [Nematostella vectensis]
gi|156205251|gb|EDO28291.1| predicted protein [Nematostella vectensis]
Length = 181
Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats.
Identities = 77/175 (44%), Positives = 111/175 (63%), Gaps = 5/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++ V IL+ + F D RG+F ++++++ E GLQ FVQDNHS S G +RGLH+Q
Sbjct: 7 DLPGVIILEPKVFGDQRGFFFESFNARSFAEATGLQREFVQDNHSRS-QRGVLRGLHYQV 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQ KLVR AG ++D+AVD+RR+SPT+G WV + +SA N Q+++P GFAHGF+ L
Sbjct: 66 Q-QAQGKLVRVTAGEVYDVAVDLRRSSPTFGRWVGVHLSAENNRQLWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ EH+ + W D ++ I WPL P +S KDQ+
Sbjct: 125 EFAEFLYKTTDYYAPEHERCIRWDDPTLAIDWPLDGA--PQLSAKDQSGLSFADA 177
>gi|150376856|ref|YP_001313452.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium medicae WSM419]
gi|150031403|gb|ABR63519.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium medicae WSM419]
Length = 187
Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats.
Identities = 88/183 (48%), Positives = 125/183 (68%), Gaps = 2/183 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+++ V + RKF D RG+FS+T++++ L G++ FVQDNHS+S GT+RGLH+Q
Sbjct: 7 LSLGGVLEIVPRKFGDERGFFSETFNAETLAAQGVELSFVQDNHSYSALAGTLRGLHYQL 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP AQAKLVR + GR+FD+ VDIR+ SP++ W+ LE+SA QI +P GFAHGF+TLE
Sbjct: 67 PPKAQAKLVRVVRGRVFDVVVDIRKGSPSFAKWLGLELSAERWNQILVPAGFAHGFVTLE 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
TEV+YKVT+ YS EH+ + + D +I I WP+ L +S KD+N LN+ + FE
Sbjct: 127 PETEVLYKVTEHYSAEHERSIRFDDPAIGIGWPVAADRL-QLSAKDRNAALLNE-SNLFE 184
Query: 181 YDG 183
+
Sbjct: 185 FTA 187
>gi|15600357|ref|NP_253851.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa PAO1]
gi|107104265|ref|ZP_01368183.1| hypothetical protein PaerPA_01005339 [Pseudomonas aeruginosa PACS2]
gi|116053311|ref|YP_793635.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218894264|ref|YP_002443134.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa
LESB58]
gi|254238136|ref|ZP_04931459.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa C3719]
gi|313110227|ref|ZP_07796123.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa 39016]
gi|81622016|sp|Q9HU21|RMLC_PSEAE RecName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; AltName:
Full=Thymidine diphospho-4-keto-rhamnose 3,5-epimerase;
AltName: Full=dTDP-4-keto-6-deoxyglucose 3,5-epimerase;
AltName: Full=dTDP-6-deoxy-D-xylo-4-hexulose
3,5-epimerase; AltName: Full=dTDP-L-rhamnose synthase
gi|9951466|gb|AAG08549.1|AE004929_4 dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa PAO1]
gi|27262962|emb|CAC82199.1| dTDP-4-keto-6-deoxy-D-glucose 3,5 epimerase [Pseudomonas
aeruginosa]
gi|115588532|gb|ABJ14547.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126170067|gb|EAZ55578.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa C3719]
gi|218774493|emb|CAW30310.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa
LESB58]
gi|310882625|gb|EFQ41219.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa 39016]
Length = 181
Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats.
Identities = 79/177 (44%), Positives = 106/177 (59%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + R F D RG+F ++Y+ + +E G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSAR-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
AQ KLVR G +FD+AVD+RR SPT+G WV +SA N Q++IP GFAHGF+ L
Sbjct: 65 IR-QAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TDF++ EH+ + W D + I WPL D P +SEKD+ D
Sbjct: 124 SEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWPLQDA--PLLSEKDRQGKAFADAD 178
>gi|241889232|ref|ZP_04776535.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gemella haemolysans ATCC
10379]
gi|241864069|gb|EER68448.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gemella haemolysans ATCC
10379]
Length = 190
Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats.
Identities = 80/182 (43%), Positives = 118/182 (64%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ FED RG+F ++YS + K+LG+ FVQDNHS S + G +RGLHFQR
Sbjct: 7 KLKDVKIIEPDVFEDERGFFMESYSEEKYKKLGIDFNFVQDNHSLSVEAGVVRGLHFQRG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ VD+R+ SPTYG W S +S +N Q+ +P GFAHGF TL
Sbjct: 67 NAAQTKLIRVVTGEVLDVVVDLRKGSPTYGQWGSFILSEHNRRQLLVPRGFAHGFATLTP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID--SPF 179
N +YK ++Y+ E D+G+A+ DK++ I W + D +S+KD+NLP + + + F
Sbjct: 127 NVNFMYKCDNYYNAEADAGIAFDDKALGIDWQI-DLSKAIISDKDRNLPTFKEFEKSNDF 185
Query: 180 EY 181
EY
Sbjct: 186 EY 187
>gi|288816245|gb|ADC54965.1| RmlC [Escherichia coli]
Length = 183
Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats.
Identities = 83/173 (47%), Positives = 112/173 (64%), Gaps = 4/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLHFQ
Sbjct: 7 EIPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKSCK-GVLRGLHFQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+ QAKLVRCI G +FD+AVDIR NS T+G WV + +S+ N Q++IP GFAHGF+TL
Sbjct: 66 PPFEQAKLVRCIVGEVFDVAVDIRPNSETFGSWVGVTLSSENKRQLWIPEGFAHGFLTLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
E +YK ++YS H+ GV W D+ I+I WP +S+KD NLP
Sbjct: 126 EIAEFVYKTNNYYSSNHERGVIWNDEEINIAWP--SQSEKILSQKDINLPSFR 176
>gi|108759544|ref|YP_632778.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Myxococcus xanthus DK 1622]
gi|108463424|gb|ABF88609.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Myxococcus xanthus DK 1622]
Length = 183
Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats.
Identities = 75/183 (40%), Positives = 111/183 (60%), Gaps = 5/183 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +L+ + F D RG+F + + + +G+ FVQDN+S S GT+RG+HFQ
Sbjct: 6 LEIPDVLLLEPKVFGDDRGFFMEMFHAARYAAVGIPGPFVQDNYSRSAK-GTLRGVHFQ- 63
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KLV+ +AG ++D+AVD+RR SPT+G WV++E+S++N Q++IP GFAHGF +
Sbjct: 64 EPQAQGKLVQVLAGAVYDVAVDVRRGSPTFGQWVAVELSSDNRRQLWIPPGFAHGFCVVS 123
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ + YK T Y+ E + V W D + I WP+ + P +S KD P L E
Sbjct: 124 DSADFHYKCTALYAPETERSVVWNDPDLAIPWPVSE---PLLSPKDAQAPRLRDAPLLPE 180
Query: 181 YDG 183
Y G
Sbjct: 181 YVG 183
>gi|218134416|ref|ZP_03463220.1| hypothetical protein BACPEC_02319 [Bacteroides pectinophilus ATCC
43243]
gi|217989801|gb|EEC55812.1| hypothetical protein BACPEC_02319 [Bacteroides pectinophilus ATCC
43243]
Length = 183
Score = 264 bits (677), Expect = 3e-69, Method: Composition-based stats.
Identities = 77/175 (44%), Positives = 104/175 (59%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I +++++ F D+RG+F +TY+ E G+ FVQDN S S G +RGLHFQ
Sbjct: 10 GIEGLKVIEPAVFGDNRGYFMETYNYNDFAEAGIDCKFVQDNQSAS-KKGVLRGLHFQI- 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G +FD+AVDIR+ SPTYG W + +SA N Q +IP FAHGF+ L
Sbjct: 68 NYPQDKLVRVVNGEVFDVAVDIRKGSPTYGQWFGVVLSAENKKQFFIPKDFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E YKVTDFY + G+ W DK I I WP+ + + SEKD P + ++
Sbjct: 128 YAEFCYKVTDFYHPNDEGGIIWDDKDIGIEWPVPEGMELIFSEKDTKWPGIKSLN 182
>gi|83645209|ref|YP_433644.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hahella chejuensis KCTC 2396]
gi|83633252|gb|ABC29219.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hahella chejuensis KCTC 2396]
Length = 179
Score = 264 bits (677), Expect = 3e-69, Method: Composition-based stats.
Identities = 78/175 (44%), Positives = 104/175 (59%), Gaps = 6/175 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++ V I++ R F D RG+F +TY + E G++ FVQDNHS S G +RGLHFQ+
Sbjct: 7 KLSGVVIIEPRVFGDHRGFFMETYQVARYRNEAGIELEFVQDNHSRSGR-GVLRGLHFQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR G +FD+AVD+R+ S TYG W + +S N LQ YIP GFAHGF L
Sbjct: 66 T-KPQGKLVRVTQGEVFDVAVDLRKGSSTYGQWEGVILSGENHLQFYIPPGFAHGFCVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK TD+Y + G+ W D I I WP+ P++S+KD LP L +I
Sbjct: 125 ETADFQYKCTDYYDPADEGGLIWNDPDIGIVWPIES---PNLSQKDLALPTLREI 176
>gi|327399838|ref|YP_004340707.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hippea maritima DSM 10411]
gi|327182467|gb|AEA34648.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hippea maritima DSM 10411]
Length = 191
Score = 264 bits (677), Expect = 3e-69, Method: Composition-based stats.
Identities = 74/180 (41%), Positives = 112/180 (62%), Gaps = 3/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ + F D+RG+F +T+ + ++ + F+QDN S S G +RGLH+Q P
Sbjct: 7 KIPDVVIIELKVFGDNRGYFMETFRQDIFEKNVRKINFIQDNESKS-KRGVLRGLHYQLP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR I G + D+AVDIR+ S T+G +V++E+S +N Q++IP GFAHGF+
Sbjct: 66 PFAQSKLVRVIKGSVIDVAVDIRKGSSTFGKYVAVELSEDNKKQLFIPRGFAHGFLVTSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YKV ++Y+ E+D + + D I+I W + VSEKD+N P L + FEY
Sbjct: 126 EAIFTYKVDNYYAPEYDRNIRFDDPDININWNFPKDKI-LVSEKDKNAPLLKDAEI-FEY 183
>gi|156304228|ref|XP_001617513.1| hypothetical protein NEMVEDRAFT_v1g226019 [Nematostella vectensis]
gi|156194287|gb|EDO25413.1| predicted protein [Nematostella vectensis]
Length = 194
Score = 264 bits (677), Expect = 3e-69, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 104/176 (59%), Gaps = 4/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
NI V+I++ + D RG+F +T++ K +E+ G FVQDNHS S G +RGLH+Q
Sbjct: 7 NIPDVKIIEPTVYGDERGFFMETWNQKQFEEMVTGKPTSFVQDNHSKS-RKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR I+G +FD+AVDIR +SPT+G WV +SA N Q+++P GFAHGF
Sbjct: 66 TEN-TQGKLVRVISGEVFDVAVDIREDSPTFGKWVGEYLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ E +YK TDFY+ + + W D + I WPL P ++ KD N N
Sbjct: 125 SEDAEFVYKCTDFYNPNAEHSIVWNDPDLAINWPLDVGGQPRLANKDLNGELFNSA 180
>gi|325300031|ref|YP_004259948.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides salanitronis DSM
18170]
gi|324319584|gb|ADY37475.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides salanitronis DSM
18170]
Length = 183
Score = 264 bits (677), Expect = 3e-69, Method: Composition-based stats.
Identities = 78/179 (43%), Positives = 106/179 (59%), Gaps = 2/179 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ R F D RG+F +++S + E FVQDN S S G +RGLHFQRP
Sbjct: 7 GIEGVVIIEPRLFRDERGYFFESFSQREFDEKVGHVTFVQDNESMSS-YGVMRGLHFQRP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ QAKLVRC+ G + D+AVDIR+ SPTYG V++E++ +N Q +IP GFAHGF L
Sbjct: 66 PFTQAKLVRCVKGAVLDVAVDIRKGSPTYGKHVAVELTEDNHRQFFIPKGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
YK +FY E + G++ DK + I W + +S KD P L ++PFE
Sbjct: 126 TAVFQYKCDEFYHPEAEGGISILDKELGIDWRIPADG-AILSGKDTAHPLLKDFETPFE 183
>gi|325680882|ref|ZP_08160419.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruminococcus albus 8]
gi|324107346|gb|EGC01625.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruminococcus albus 8]
Length = 183
Score = 264 bits (677), Expect = 3e-69, Method: Composition-based stats.
Identities = 77/178 (43%), Positives = 101/178 (56%), Gaps = 4/178 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I+ + + D+RG+F +TY K GL FVQDN S S G +RGLHFQ+
Sbjct: 10 KIKGVYIIDVKTYGDNRGYFMETYKEADFKAAGLDYNFVQDNQS-SSRKGVLRGLHFQKT 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ QAKLVR I G +FD+AVD+R+ S TYG WV + +S N Q IP GFAHGF+ +
Sbjct: 69 -HPQAKLVRVIKGEVFDVAVDLRKGSETYGQWVGVLLSEENHRQFMIPRGFAHGFVVVSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
E YK D Y E + G+ W D +I I W D +SEKD++ P L + F
Sbjct: 128 YAEFAYKCDDVYHPEDEGGIMWNDPAIGIEW--ADVGEVILSEKDKHHPSLAESKIEF 183
>gi|121633943|ref|YP_974188.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis FAM18]
gi|120865649|emb|CAM09369.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis FAM18]
Length = 190
Score = 264 bits (677), Expect = 3e-69, Method: Composition-based stats.
Identities = 71/174 (40%), Positives = 105/174 (60%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLHYQTEN 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 72 -TQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ E + + W D ++ I WPL P++S KD Q +
Sbjct: 131 AEFVYKCTDYYNPEAEHSLIWNDPTVGIDWPLQGE--PNLSPKDLAGKTWAQAE 182
>gi|291548483|emb|CBL21591.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruminococcus sp. SR1/5]
Length = 185
Score = 264 bits (677), Expect = 3e-69, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 105/176 (59%), Gaps = 2/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I +++++ F DSRG+F +TY+ KE G+ FVQDN S S G +RGLHFQ
Sbjct: 11 DIEGLKVIEPTVFGDSRGYFMETYNYNDFKEAGIDVEFVQDNQS-SSRYGVLRGLHFQIS 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G +FD+AVD+R S T+G W + +SA N Q +IP GFAHGF+ L
Sbjct: 70 -YPQDKLVRVVNGEVFDVAVDLREGSKTFGKWYGVVLSAENKKQFFIPKGFAHGFLVLSE 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
N E YK +DFY + G+ W DK I++ WP+ + + S+KDQ + +
Sbjct: 129 NAEFTYKCSDFYHPNDEGGLIWNDKDINVEWPIPEGMELIFSDKDQKWGSFEEYKN 184
>gi|188997299|ref|YP_001931550.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932366|gb|ACD66996.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 188
Score = 264 bits (677), Expect = 3e-69, Method: Composition-based stats.
Identities = 87/174 (50%), Positives = 117/174 (67%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+I+K++ FED+RG+F + Y ++ GL FVQDNHS S G +RGLHFQ
Sbjct: 9 EIPEVKIVKSKVFEDARGFFLEFYKKSDFEKAGLNVEFVQDNHSKSVK-GVLRGLHFQEK 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY Q KLVRCI G+IFD+AVDIR +SP + WV++E+S N L ++IP GFAHGF+TL
Sbjct: 68 PYEQGKLVRCIKGKIFDVAVDIRPDSPYFKKWVAVELSEENKLMLWIPPGFAHGFLTLSE 127
Query: 122 NTEVIYKVT-DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E+IYKV+ + YS +D G+ W D+ I+I WPL +SEKD+ LP L +
Sbjct: 128 EAEIIYKVSHNEYSPAYDRGIIWNDQDINIKWPLETIDNLILSEKDKKLPTLKE 181
>gi|163748303|ref|ZP_02155585.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oceanibulbus indolifex
HEL-45]
gi|161378422|gb|EDQ02909.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oceanibulbus indolifex
HEL-45]
Length = 189
Score = 264 bits (677), Expect = 3e-69, Method: Composition-based stats.
Identities = 87/180 (48%), Positives = 118/180 (65%), Gaps = 1/180 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V IL + D+RG+FS+++++K L + GL FVQDNHS S T+RGLHFQ PP
Sbjct: 8 LAGVLILTPVRHGDARGFFSESWNAKTLADAGLDYHFVQDNHSLSEAPNTLRGLHFQTPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQAKLVRC G +FD+AVDIR SP++G WV +++S NG Q+ IP GF HGF+T
Sbjct: 68 HAQAKLVRCGRGALFDVAVDIRHGSPSFGQWVGVDLSFENGRQLLIPAGFLHGFVTRVPM 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
TE+IYK TD Y+ + D+ V W D I I W L P +S+KD + P L++I F Y+
Sbjct: 128 TEIIYKCTDTYAPDCDAAVRWDDPEIGIDWGLQGQ-TPILSKKDASAPLLSEIVPHFTYE 186
>gi|254462855|ref|ZP_05076271.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacterales bacterium
HTCC2083]
gi|206679444|gb|EDZ43931.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacteraceae bacterium
HTCC2083]
Length = 189
Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats.
Identities = 90/179 (50%), Positives = 119/179 (66%), Gaps = 1/179 (0%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V + ++F D RG+F ++YS + +++GL FVQDN+S S GT+RGLHFQ PP+A
Sbjct: 12 DVLAVIPQRFGDERGFFCESYSKRRFEDIGLSFDFVQDNYSISAKAGTVRGLHFQAPPHA 71
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVRC GR+ D+AVDIR+ SPTYG W S E+S NG+Q+ IP GF HGF+TLE NTE
Sbjct: 72 QTKLVRCGQGRLLDVAVDIRKGSPTYGQWTSAEMSFENGVQLLIPKGFLHGFVTLEPNTE 131
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
IYK D+Y+ E D V + D I + W + D +S+KD+ P L DSPF Y+G
Sbjct: 132 TIYKSDDYYAPECDGAVRFDDPEIGVDWGI-DLKTVILSDKDRAAPLLKDFDSPFVYEG 189
>gi|56752004|ref|YP_172705.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus elongatus PCC
6301]
gi|81300907|ref|YP_401115.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus elongatus PCC
7942]
gi|56686963|dbj|BAD80185.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus elongatus PCC
6301]
gi|81169788|gb|ABB58128.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus elongatus PCC
7942]
Length = 183
Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats.
Identities = 78/175 (44%), Positives = 112/175 (64%), Gaps = 3/175 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V IL+ + F D RG+F ++++++ EL GL FVQDNHS S G +RGLH+Q
Sbjct: 8 LADVCILEPKVFGDDRGFFLESFNARTFAELTGLNVTFVQDNHSRS-QQGVLRGLHYQIQ 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC+ G IFD+AVD+R++SP +G WV +SA+N Q+++P GFAHGF+ L
Sbjct: 67 -QAQGKLVRCVVGEIFDVAVDLRQSSPQFGQWVGERLSADNHRQLWVPPGFAHGFLVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ EV+YK TD+Y+ H+ + W D +I I WPL P +S KD L + +
Sbjct: 126 SAEVLYKTTDYYAPTHERSLRWDDPAIAIDWPLAAGQQPQLSAKDAAAVNLLEAE 180
>gi|150400816|ref|YP_001324582.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanococcus aeolicus
Nankai-3]
gi|150013519|gb|ABR55970.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanococcus aeolicus
Nankai-3]
Length = 185
Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats.
Identities = 83/175 (47%), Positives = 115/175 (65%), Gaps = 4/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V ++K + F D RG+F +TY + + G++ FVQDNHS S G +RGLHFQ+
Sbjct: 9 KISEVILIKPKIFGDERGFFLETYEKEDFENAGIKGEFVQDNHSKSCH-GVLRGLHFQKE 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQAK+VRCI G IFD+AVD+R +SPT+G WV + +S N Q+YIP GFAHGF L
Sbjct: 68 PYAQAKIVRCIKGVIFDVAVDLRGSSPTFGQWVGVVLSEYNKHQLYIPRGFAHGFCVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EV+YKV + Y+ E + GV W D+ I I W + + P +S+KD+ L ++D
Sbjct: 128 EAEVVYKVDNKYAPECECGVIWNDEDIGIDWLIDE---PILSDKDKQWHTLKELD 179
>gi|194466300|ref|ZP_03072287.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus reuteri 100-23]
gi|194453336|gb|EDX42233.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus reuteri 100-23]
Length = 193
Score = 264 bits (676), Expect = 4e-69, Method: Composition-based stats.
Identities = 74/182 (40%), Positives = 107/182 (58%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I+ F D RG+F +TYS + K G+ FVQDN S S G +RGLHFQR
Sbjct: 10 KLQDVKIITPAVFGDHRGFFEETYSDRDFKAAGIDFDFVQDNQSLSTQAGVLRGLHFQRG 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ VD+R+ SPTY W +SA+N Q+ +P GFAHGF+TL
Sbjct: 70 KAAQTKLIRVVTGAVLDVIVDLRKGSPTYKQWEGYILSASNHRQLLVPRGFAHGFLTLTD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID--SPF 179
N +YK ++Y E D G++++ ++I WP+ + SEKD P L + + +PF
Sbjct: 130 NVNFVYKCDNYYDAEADGGISFKTPELNIDWPI-EFDKAITSEKDAAQPTLTEFEKDNPF 188
Query: 180 EY 181
Y
Sbjct: 189 VY 190
>gi|328957829|ref|YP_004375215.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Carnobacterium sp. 17-4]
gi|328674153|gb|AEB30199.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Carnobacterium sp. 17-4]
Length = 216
Score = 264 bits (676), Expect = 4e-69, Method: Composition-based stats.
Identities = 80/192 (41%), Positives = 117/192 (60%), Gaps = 1/192 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N+ V+I++ F D RG+F+++Y+ + E G+ F+QDNHS S + G +RG+HFQ
Sbjct: 7 NLQDVKIIEMAVFGDHRGFFTESYTKEKFLEAGIIIDFIQDNHSLSVEPGVLRGMHFQTL 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVR G I+D+ VD+R SPTYG W +S N Q+ +P GFAH F+TL
Sbjct: 67 EKAQTKLVRATTGVIYDVIVDMRVGSPTYGQWEGYILSEFNHRQLLVPKGFAHAFVTLTP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N V YKV +++S EHD G+A+ D +++I WP+ L +SEKD P L + ++PF Y
Sbjct: 127 NCNVQYKVDEYFSSEHDGGIAFDDPALNIQWPMPIDKL-VLSEKDTKHPKLAEFNNPFVY 185
Query: 182 DGLPLLSLNMER 193
L + E+
Sbjct: 186 KKFKLGDICNEK 197
>gi|301067029|ref|YP_003789052.1| dTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme [Lactobacillus
casei str. Zhang]
gi|300439436|gb|ADK19202.1| dTDP-4-dehydrorhamnose 3,5-epimerase related enzyme [Lactobacillus
casei str. Zhang]
Length = 190
Score = 264 bits (676), Expect = 4e-69, Method: Composition-based stats.
Identities = 74/180 (41%), Positives = 109/180 (60%), Gaps = 1/180 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V++++T F D+RG+F++TY+ G+ + F QDN S S + G +RG+H+Q
Sbjct: 9 KLQDVKLVETDVFGDNRGFFTETYTRDKFLAAGITNDFNQDNQSLSAEAGVLRGMHYQMA 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVR + G + D+ VDIR+ SPTYG W +S N Q+++P GFAHGF+TL
Sbjct: 69 PDAQTKLVRVVTGVVEDVLVDIRKGSPTYGQWEGYILSEFNHRQLFVPKGFAHGFITLTP 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N YKV FY+ + D G+A+ D I I WP+ L +S+KD+ P L ++ F Y
Sbjct: 129 NVNFCYKVEGFYAPQSDRGIAFDDPDIGIQWPMSTDHL-IMSDKDKKHPQLKDAENNFVY 187
>gi|224538134|ref|ZP_03678673.1| hypothetical protein BACCELL_03025 [Bacteroides cellulosilyticus
DSM 14838]
gi|224520262|gb|EEF89367.1| hypothetical protein BACCELL_03025 [Bacteroides cellulosilyticus
DSM 14838]
Length = 193
Score = 264 bits (676), Expect = 4e-69, Method: Composition-based stats.
Identities = 73/183 (39%), Positives = 113/183 (61%), Gaps = 2/183 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI+ + I++ + DSRG+F ++++ K +E + FVQDN S S G +RGLHFQ+P
Sbjct: 7 NIDQIAIIEPQIHSDSRGYFFESFNQKEFEEKVCKTTFVQDNESKSS-YGVLRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR + G + D+AVDIR SPT+G VS+E++ +N Q +IP GFAHGF L
Sbjct: 66 PFAQSKLVRVVKGAVLDVAVDIRIGSPTFGQHVSIELTEDNHRQFFIPRGFAHGFSVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK + Y+ +++ +AW D + I W + + +SEKD+ P L + + F+Y
Sbjct: 126 EVIFQYKCDNLYAPQYEGAIAWDDPDLGIDWHIPKDKM-LLSEKDKTHPRLKEAEWLFDY 184
Query: 182 DGL 184
+
Sbjct: 185 SDM 187
>gi|29725997|gb|AAO88928.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]
Length = 181
Score = 264 bits (676), Expect = 4e-69, Method: Composition-based stats.
Identities = 73/167 (43%), Positives = 102/167 (61%), Gaps = 6/167 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPAVFGDERGFFMETWNQKRFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD VDIR++SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 TEN-TQGKLVRVVSGEVFDAPVDIRKDSPTFGKWVGVYLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y+ + + W D I I WP+ I P +S KD
Sbjct: 125 SDEAEFVYKCTDYYNPTAEHSLLWNDPDIGIEWPI--DIQPVLSAKD 169
>gi|152987706|ref|YP_001351220.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa PA7]
gi|150962864|gb|ABR84889.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa PA7]
Length = 181
Score = 264 bits (676), Expect = 4e-69, Method: Composition-based stats.
Identities = 77/177 (43%), Positives = 107/177 (60%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + R F D RG+F ++Y+ + +E G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSAR-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
AQ KLVR G +FD+AVD+RR SPT+G WV +SA N Q++IP GFAHGF+ L
Sbjct: 65 IQ-QAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TDF++ E++ + W D + I WPL + P +SEKD+ + D
Sbjct: 124 SEYAEFLYKTTDFWAPEYERSIVWNDPDLKIDWPLREA--PLLSEKDRQAKAFAEAD 178
>gi|293115726|ref|ZP_05792782.2| dTDP-4-dehydrorhamnose 3,5-epimerase [Butyrivibrio crossotus DSM
2876]
gi|292808617|gb|EFF67822.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Butyrivibrio crossotus DSM
2876]
Length = 195
Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats.
Identities = 71/173 (41%), Positives = 104/173 (60%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I +++++ R F D RG+F ++Y+ KE G+ VFVQDN S S G +RGLHFQ+
Sbjct: 20 EIEGLKVIEPRVFGDERGYFFESYNYNDFKEAGIPQVFVQDNQSAS-KRGVLRGLHFQK- 77
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR I G +FD+AVD+R+ S TYG W + +S +N Q +IP FAHGF+ L
Sbjct: 78 NFPQDKLVRVIRGEVFDVAVDLRKGSKTYGKWFGVVLSEDNKKQFFIPKNFAHGFLVLSD 137
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E YK TDFY + + G+ + D I + WP + + +S+KDQ + +
Sbjct: 138 YAEFAYKCTDFYHPDDEGGLLYNDPDIGVEWPFEEGVELILSDKDQKWSGIKE 190
>gi|330962124|gb|EGH62384.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 181
Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats.
Identities = 79/176 (44%), Positives = 110/176 (62%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V IL+ R F D RG+F +++++K +E GL FVQDNHS S G +RGLH+Q
Sbjct: 7 QLPEVLILEPRVFGDERGFFYESFNAKAFQEATGLTRQFVQDNHSRS-QQGVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQ KLVR G++ D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L
Sbjct: 66 EN-AQGKLVRVTVGKVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+Y+ + +AW D + I W L PS+S KDQ L + D
Sbjct: 125 EHAEFLYKTTDYYTPSAERCIAWDDPDLAIDWQLDGQ--PSLSAKDQQGKRLKEAD 178
>gi|298484711|ref|ZP_07002813.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298160744|gb|EFI01763.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 181
Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 108/176 (61%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V IL+ + F D RG+F ++++++ + GL FVQDNHS S G +RGLH+Q
Sbjct: 7 KLPEVLILEPKVFGDERGFFYESFNARAFQAATGLTREFVQDNHSRS-QQGVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQ KLVR G++ D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L
Sbjct: 66 EN-AQGKLVRVTVGKVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
N E +YK TD+Y+ + +AW D + I W P++S KDQ L + D
Sbjct: 125 ENAEFLYKTTDYYTPSAERCIAWNDPDLAIDWQFDGQ--PNLSAKDQQGKRLEEAD 178
>gi|74317796|ref|YP_315536.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thiobacillus denitrificans
ATCC 25259]
gi|74057291|gb|AAZ97731.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thiobacillus denitrificans
ATCC 25259]
Length = 180
Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats.
Identities = 79/175 (45%), Positives = 110/175 (62%), Gaps = 4/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V +L+ + F D+RG+F ++++ K LGL FVQDNHS S G +RGLH+Q
Sbjct: 7 SLPEVLLLEPKVFGDARGFFLESWNRKTFSALGLDVDFVQDNHSRSAR-GVLRGLHYQIK 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVD+RR SP +G WV E+SA N ++IP GFAHGF+ L
Sbjct: 66 DP-QGKLVRVVNGSVFDVAVDLRRASPNFGRWVGYELSAENQRMLWIPPGFAHGFLVLSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + +YK T +Y+ E D GV W D I I WP + P++S KDQ LPFL +
Sbjct: 125 SADFLYKTTAYYAPEWDRGVCWNDPEIGIEWPWSGS--PTLSAKDQVLPFLKDAE 177
>gi|171057313|ref|YP_001789662.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptothrix cholodnii SP-6]
gi|170774758|gb|ACB32897.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptothrix cholodnii SP-6]
Length = 183
Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats.
Identities = 77/175 (44%), Positives = 113/175 (64%), Gaps = 3/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I++ + F D+RG+F ++++ +G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIADVLIIEPKVFGDARGFFMESWNQSRFDAAVGSPVRFVQDNHSRSAR-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVR G +FD+AVD+RR+SPT G W+ E+SA+N +++IP GFAHGFM L
Sbjct: 66 PPHAQGKLVRVTRGVVFDVAVDLRRSSPTLGRWICTELSADNHRELWIPPGFAHGFMVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + +YK TD+++ + ++ V W D + I WP LDT P +S KDQ P +
Sbjct: 126 DSADFLYKTTDYHAPDCEAAVRWDDPELAIAWPALDT-PPLLSAKDQQAPGWREA 179
>gi|182416967|ref|ZP_02948348.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium butyricum 5521]
gi|237666125|ref|ZP_04526112.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182379143|gb|EDT76645.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium butyricum 5521]
gi|237658215|gb|EEP55768.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 183
Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats.
Identities = 78/181 (43%), Positives = 115/181 (63%), Gaps = 5/181 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V I++ + F D RGWF +TYS+ E + FVQDN S+S G +RG+HFQ
Sbjct: 7 ELDGVYIVEPQVFGDERGWFMETYSAIKTPE--IACNFVQDNQSYSKGKGILRGIHFQNG 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQAKLVRC+ G + D+AVD+R+ SPTY WV++E+SA N Q++IP GF HGF+TL
Sbjct: 65 EHAQAKLVRCVKGAVLDVAVDLRKGSPTYKKWVAVELSAENKKQLFIPRGFGHGFVTLSD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ E +YK ++Y+ E+D + + D I + W + + P +SEKD+ P L D F Y
Sbjct: 125 DVEFVYKTDNYYNYENDRSIKFDDPEIGVEWGIKN---PILSEKDKKAPLLIDSDCTFVY 181
Query: 182 D 182
+
Sbjct: 182 E 182
>gi|307246379|ref|ZP_07528455.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307255365|ref|ZP_07537175.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307259815|ref|ZP_07541533.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306852712|gb|EFM84941.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306861674|gb|EFM93658.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306866113|gb|EFM97983.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 180
Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats.
Identities = 72/174 (41%), Positives = 102/174 (58%), Gaps = 4/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI V++L+ + F D RG+F +T+ + K+ FVQ+NHS S G +RGLH+Q
Sbjct: 7 NIPDVKLLEPQVFGDERGFFMETFRDEWFKQNVADRTFVQENHSKSIK-GVLRGLHYQTE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 N-TQGKLVRVVQGAVFDVAVDLRKSSPTFGQWVGEVLSAENKRQLWVPEGFAHGFYVLTD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YK TD+Y+ + + + W D +I I W L PS+S KD L
Sbjct: 125 TAEFTYKCTDYYNPKAEHSLIWNDPTIAIDWNLNGE--PSLSAKDLAGRALADA 176
>gi|3132257|dbj|BAA28134.1| dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase [Actinobacillus
actinomycetemcomitans]
Length = 180
Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats.
Identities = 72/174 (41%), Positives = 104/174 (59%), Gaps = 4/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++L+ + F D RG+F +T+ + +E FVQ+NHS S G +RGLH+Q
Sbjct: 7 KIPDVKLLELQVFGDERGFFMETFRDEWFRENVADHTFVQENHSKSIK-GVLRGLHYQTE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR ++G +FD+AVD+R+NSPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 N-TQGKLVRVVSGAVFDVAVDMRKNSPTFGQWVGEILSAENKRQLWVPEGFAHGFYVLTD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YK TD+Y+ + + + W D+++ I WPL PS+S KD L
Sbjct: 125 EAEFTYKCTDYYNPKAEHSLIWNDETVGIEWPLEGE--PSLSAKDLAGKVLKDA 176
>gi|134297304|ref|YP_001121039.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia vietnamiensis
G4]
gi|134140461|gb|ABO56204.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia vietnamiensis
G4]
Length = 181
Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats.
Identities = 69/177 (38%), Positives = 109/177 (61%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ + F D RG+F ++++ + +G FVQDNHS S +RGLH+Q
Sbjct: 6 LAIPDVVLIEPQVFGDERGFFFESFNQGKFEQAIGRPVQFVQDNHSRS-TRHVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR + G +FD+AVD+R++SPT+G WV ++A+N Q+++P GFAHGF+ L
Sbjct: 65 IQQP-QGKLVRVVQGAVFDVAVDLRKSSPTFGQWVGATLTADNKQQLWVPEGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ H+ +AW D +I I WP ++P +S KD+ + Q +
Sbjct: 124 SDTAEFLYKTTDYYAPAHERSIAWNDPAIGIQWPA--GLVPQLSAKDKAGVSIQQAE 178
>gi|302340708|ref|YP_003805914.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Spirochaeta smaragdinae DSM
11293]
gi|301637893|gb|ADK83320.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Spirochaeta smaragdinae DSM
11293]
Length = 185
Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats.
Identities = 81/180 (45%), Positives = 115/180 (63%), Gaps = 2/180 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I + ++K F D RG+F +TY + + G+ ++FVQDNHS S IRGLH Q+
Sbjct: 8 LAIEGLVVVKPHAFVDERGFFMETYKASAFQTAGIHEIFVQDNHSRS-RKNVIRGLHLQK 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PY+Q KLVRC+AG ++D+AVD+R SPTY W LE+SA N L ++P GFAHGF L
Sbjct: 67 NPYSQGKLVRCVAGVVWDVAVDLRVGSPTYKQWYGLELSAENRLMFFLPPGFAHGFAVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
E +YKVT Y+ E D G+ W D I I WP+ + + +SEKD+ LP+L+ ++ P+
Sbjct: 127 DTAESVYKVTAEYAPESDGGIRWNDPDIGIKWPISEDEV-LISEKDRGLPWLSDLEEPYV 185
>gi|116495477|ref|YP_807211.1| dTDP-4-dehydrorhamnose 3,5-epimerase related enzyme [Lactobacillus
casei ATCC 334]
gi|191638940|ref|YP_001988106.1| RmlC [Lactobacillus casei BL23]
gi|191638981|ref|YP_001988147.1| RmlC [Lactobacillus casei BL23]
gi|116105627|gb|ABJ70769.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus casei ATCC 334]
gi|190713242|emb|CAQ67248.1| RmlC [Lactobacillus casei BL23]
gi|190713283|emb|CAQ67289.1| RmlC [Lactobacillus casei BL23]
gi|215272230|dbj|BAG84629.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus casei]
gi|327382988|gb|AEA54464.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus casei LC2W]
gi|327383034|gb|AEA54510.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus casei LC2W]
gi|327386176|gb|AEA57650.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus casei BD-II]
gi|327386221|gb|AEA57695.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus casei BD-II]
Length = 190
Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats.
Identities = 74/180 (41%), Positives = 109/180 (60%), Gaps = 1/180 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V++++T F D+RG+F++TY+ G+ + F QDN S S + G +RG+H+Q
Sbjct: 9 KLQDVKLVETDVFGDNRGFFTETYTRDKFVAAGITNDFNQDNQSLSAEAGVLRGMHYQMA 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVR + G + D+ VDIR+ SPTYG W +S N Q+++P GFAHGF+TL
Sbjct: 69 PDAQTKLVRVVTGVVEDVLVDIRKGSPTYGQWEGYILSEFNHRQLFVPKGFAHGFITLTP 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N YKV FY+ + D G+A+ D I I WP+ L +S+KD+ P L ++ F Y
Sbjct: 129 NVNFCYKVEGFYAPQSDRGIAFDDPDIGIQWPMSTDHL-IMSDKDKKHPQLKDAENNFVY 187
>gi|119898165|ref|YP_933378.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Azoarcus sp. BH72]
gi|119670578|emb|CAL94491.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Azoarcus sp. BH72]
Length = 181
Score = 264 bits (675), Expect = 5e-69, Method: Composition-based stats.
Identities = 75/175 (42%), Positives = 109/175 (62%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +L+ + F DSRG+F +++++ + GL VFVQDNHS S G +RGLH+Q
Sbjct: 8 IPEVLMLEPQVFGDSRGFFLESFNANRFETATGLPPVFVQDNHSRSSR-GVLRGLHYQLS 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR GR+FD+AVD+RR+S T+ WV E+S N Q++IP GFAHGF+ L
Sbjct: 67 QP-QGKLVRVARGRVFDVAVDLRRSSATFAQWVGTELSDENQRQMWIPPGFAHGFVVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD+Y+ E + V W D ++ I WP+ + P +S KDQ+ L + +
Sbjct: 126 TADFLYKTTDYYAPEAERCVLWNDPALGIEWPISEP--PLLSAKDQSGKLLAEAE 178
>gi|115279744|gb|ABI85360.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]
Length = 183
Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats.
Identities = 76/177 (42%), Positives = 112/177 (63%), Gaps = 5/177 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPTVLGDERGFFMETWNQKRFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 TEN-TQGKLVRVVSGEVFDVAVDIRKDSPTFGKWVGVYLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ + ++W D ++ITWP + P +SEKD+N L++I
Sbjct: 125 SDEAEFVYKCTDYYNPTAEISLSWDDPDLEITWPNFNQ-SPILSEKDKNPISLDKIK 180
>gi|330874358|gb|EGH08507.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 181
Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 108/176 (61%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V IL+ + F D RG+F ++++++ ++ GL FVQDNHS S G +RGLH+Q
Sbjct: 7 QLPEVLILEPKVFGDERGFFYESFNARAFQQATGLTRQFVQDNHSRS-QRGVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQ KLVR G++ D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L
Sbjct: 66 EN-AQGKLVRVTVGKVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+Y+ + +AW D + I W PS+S KDQ L D
Sbjct: 125 EHAEFLYKTTDYYTPSAERCIAWNDPDLAIDWQF--DAEPSLSAKDQQGKSLKDAD 178
>gi|257867753|ref|ZP_05647406.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus casseliflavus
EC30]
gi|257874080|ref|ZP_05653733.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus casseliflavus
EC10]
gi|257801836|gb|EEV30739.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus casseliflavus
EC30]
gi|257808244|gb|EEV37066.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus casseliflavus
EC10]
Length = 190
Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats.
Identities = 74/182 (40%), Positives = 113/182 (62%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V++++ + D RG+F+++YS + G+ FVQDNHS S + G +RGLHFQ+
Sbjct: 7 KLTDVKLIEMDVYGDHRGFFTESYSKEKFSAQGIDFDFVQDNHSLSAEAGVLRGLHFQKG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ VDIR+ SPTYG W ++ +N Q+ +P G+AHGFMTL
Sbjct: 67 EAAQTKLIRVVTGAVLDVIVDIRKGSPTYGEWEGYLLTEHNHRQLLVPRGYAHGFMTLTP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN--QIDSPF 179
N +YK ++Y+ E D G+A+ D + ITWP+ D +SEKD+ P L +I++ F
Sbjct: 127 NVNFLYKCDNYYNAEADGGIAFDDPDLAITWPI-DVKKAILSEKDKKHPTLKEFEIENTF 185
Query: 180 EY 181
Y
Sbjct: 186 IY 187
>gi|99077996|ref|YP_611255.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruegeria sp. TM1040]
gi|99034939|gb|ABF61993.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruegeria sp. TM1040]
Length = 182
Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats.
Identities = 91/180 (50%), Positives = 117/180 (65%), Gaps = 4/180 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V+IL +F D+RG+FS++++ K + E GL FVQDNHS S D GTIRGLHFQ P
Sbjct: 7 KLSGVKILTPARFGDARGFFSESWNRKRMAEHGLDLEFVQDNHSMSADVGTIRGLHFQAP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVRC G +FD+ VDIR SPTYG W+ +E+SA NG Q+ +P GF HGF+T
Sbjct: 67 PHAQDKLVRCGQGVLFDVVVDIRNGSPTYGEWIGVELSAENGRQLLVPKGFLHGFITRAP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
TE+IYK TD+Y+ E D GV W S I W P +SEKD P + SPF +
Sbjct: 127 MTEIIYKCTDYYAPECDGGVRWD--SCGIDWGFDGQ--PILSEKDAAAPKFADLQSPFVF 182
>gi|121633959|ref|YP_974204.1| dTDP-D-glucose 4,6-dehydratase [Neisseria meningitidis FAM18]
gi|120865665|emb|CAM09389.1| dTDP-D-glucose 4,6-dehydratase [Neisseria meningitidis FAM18]
Length = 184
Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats.
Identities = 71/173 (41%), Positives = 105/173 (60%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLHYQTEN 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 72 -TQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ E + + W D ++ I WPL P++S KD L +
Sbjct: 131 AEFVYKCTDYYNPEAEHSLIWNDPTVGIDWPL--QTAPNLSPKDLAGKVLAEA 181
>gi|152980058|ref|YP_001353941.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Janthinobacterium sp.
Marseille]
gi|151280135|gb|ABR88545.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Janthinobacterium sp.
Marseille]
Length = 183
Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats.
Identities = 72/176 (40%), Positives = 106/176 (60%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I + +L+ D RG+F ++++ + E+ G FVQDNHS S G +RGLH+Q
Sbjct: 9 KIPDILLLEPNVLGDDRGFFFESFNERRFAEVTGKTVKFVQDNHSRSLR-GVLRGLHYQI 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR ++G +FD+AVDIR++SPT+G W +SA N Q++IP GFAHGF+
Sbjct: 68 QQP-QGKLVRVVSGEVFDVAVDIRKSSPTFGQWAGAVLSAENQRQMWIPEGFAHGFVVTS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+++ EH+ +AW D +I I WP+ +P +S KDQ L +
Sbjct: 127 DTAEFLYKTTDYWAPEHERCIAWDDPAIGIDWPING--VPILSAKDQQGTRLADAE 180
>gi|71733249|ref|YP_272458.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257483684|ref|ZP_05637725.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|289626550|ref|ZP_06459504.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289649196|ref|ZP_06480539.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
aesculi str. 2250]
gi|71553802|gb|AAZ33013.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320326581|gb|EFW82631.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
glycinea str. B076]
gi|320331097|gb|EFW87069.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330869503|gb|EGH04212.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330871968|gb|EGH06117.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330892261|gb|EGH24922.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv. mori
str. 301020]
gi|331012162|gb|EGH92218.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 181
Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 108/176 (61%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V IL+ + F D RG+F ++++++ + GL FVQDNHS S G +RGLH+Q
Sbjct: 7 KLPEVLILEPKVFGDERGFFYESFNARAFQAATGLTREFVQDNHSRS-QQGVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQ KLVR G++ D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L
Sbjct: 66 EN-AQGKLVRVTVGKVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+Y+ + +AW D + I W P++S KDQ L + D
Sbjct: 125 EHAEFLYKTTDYYTPSAERCIAWNDPDLAIDWQFDGQ--PNLSAKDQQGKRLKEAD 178
>gi|325138752|gb|EGC61304.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
ES14902]
gi|325197361|gb|ADY92817.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis G2136]
Length = 185
Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats.
Identities = 71/174 (40%), Positives = 105/174 (60%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLHYQTEN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 67 -TQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ E + + W D ++ I WPL P++S KD Q +
Sbjct: 126 AEFVYKCTDYYNPEAEHSLIWNDPTVGIDWPLQGE--PNLSPKDLAGKTWAQAE 177
>gi|309274612|gb|ADO64236.1| RmlC [Vibrio vulnificus]
Length = 181
Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats.
Identities = 75/177 (42%), Positives = 109/177 (61%), Gaps = 6/177 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
NI V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 NIPDVKIIEPTVFGDERGFFMETWNQKRFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SPT+G WV +SA N Q++IP GFAHGF
Sbjct: 66 TEN-TQGKLVRVVSGEVFDVAVDIRKDSPTFGQWVGEYLSAENKRQLWIPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ + + + W D+++ I WPL + +P +S KD + +
Sbjct: 125 SNEAEFVYKCTDYYNPDSEVSIKWDDETLKIQWPLAN--MPILSNKDLAAQNFLESE 179
>gi|313203692|ref|YP_004042349.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Paludibacter propionicigenes
WB4]
gi|312443008|gb|ADQ79364.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paludibacter propionicigenes
WB4]
Length = 182
Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats.
Identities = 69/177 (38%), Positives = 100/177 (56%), Gaps = 2/177 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I+K R F D+RG+F ++Y+ K + F QDN S S G IRGLH+Q P
Sbjct: 8 IKDLVIIKPRVFADARGFFFESYNEAAYKAANINIHFCQDNQSKSS-YGVIRGLHYQLLP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+Q KLV + G ++D+AVD+R++SPT+G W +E++ N LQ IP GFAHGF L
Sbjct: 67 QSQTKLVSVVQGAVWDVAVDLRKDSPTFGQWYGVELTEENHLQFIIPQGFAHGFSVLSET 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
YK DFYS + + G+ + D ++ I W + +S+KD P L + F
Sbjct: 127 AVFTYKCDDFYSPQLERGIMYNDPALAIDWKIP-ADKAIISDKDTKHPLLKDAELNF 182
>gi|28872505|ref|NP_795124.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213970795|ref|ZP_03398919.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato T1]
gi|301383029|ref|ZP_07231447.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato Max13]
gi|302063434|ref|ZP_07254975.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato K40]
gi|302130652|ref|ZP_07256642.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|28855760|gb|AAO58819.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213924467|gb|EEB58038.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato T1]
Length = 181
Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats.
Identities = 76/176 (43%), Positives = 108/176 (61%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V IL+ + F D RG+F ++++++ +E GL FVQDNHS S G +RGLH+Q
Sbjct: 7 QLPEVLILEPKVFGDERGFFYESFNARAFQEATGLTRQFVQDNHSRS-QRGVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQ KLVR G++ D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L
Sbjct: 66 EN-AQGKLVRVTVGKVLDVAVDIRRSSPNFGRWVGVELSAENARQLWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+Y+ + +AW D + I W PS+S KDQ L D
Sbjct: 125 EHAEFLYKTTDYYTPSAERCIAWNDPDLAIDWQFDGE--PSLSAKDQQGKSLKDAD 178
>gi|187935603|ref|YP_001887438.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum B str.
Eklund 17B]
gi|187723756|gb|ACD24977.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum B str.
Eklund 17B]
Length = 179
Score = 263 bits (674), Expect = 7e-69, Method: Composition-based stats.
Identities = 77/178 (43%), Positives = 113/178 (63%), Gaps = 5/178 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V I++ + F D RGWF +TYS E + F+QDN S+S + G +RG+HFQ
Sbjct: 7 KLDGVYIVEPQVFGDERGWFMETYSKIKTPE--IACDFIQDNQSYSKEKGILRGIHFQNG 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQAKLVRC+ G + D+AVD+R+NSPTY WV++E+SA N Q++IP GF HGF+TL
Sbjct: 65 KHAQAKLVRCVRGAVLDVAVDLRKNSPTYKQWVAVELSAENKKQLFIPRGFGHGFVTLTD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ E +YK ++Y+ E D + + D I + W + + P +SEKD+ P L D F
Sbjct: 125 DVEFVYKTDNYYNHESDRSIRFNDPEIGVEWGIKN---PILSEKDKKAPLLKDSDCIF 179
>gi|325143337|gb|EGC65670.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
961-5945]
Length = 185
Score = 263 bits (674), Expect = 7e-69, Method: Composition-based stats.
Identities = 71/174 (40%), Positives = 104/174 (59%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLHYQTEN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 67 -TQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ E + + W D ++ I WPL P +S KD Q +
Sbjct: 126 AEFVYKCTDYYNPEAEHSLIWNDPTVGIDWPL--QTAPLLSPKDLAGKTWAQAE 177
>gi|168481379|gb|ACA24862.1| RmlC [Shigella dysenteriae]
gi|168481394|gb|ACA24876.1| RmlC [Escherichia coli]
Length = 180
Score = 263 bits (674), Expect = 7e-69, Method: Composition-based stats.
Identities = 81/168 (48%), Positives = 112/168 (66%), Gaps = 3/168 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKIFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKSCK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFITLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK TDFYS +H+ + + D+SI I WP T +S KD+
Sbjct: 126 NIAEFLYKTTDFYSPKHEVCIRYDDESIGIQWP-KATDKMLISSKDKK 172
>gi|88802242|ref|ZP_01117769.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Polaribacter irgensii 23-P]
gi|88781100|gb|EAR12278.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Polaribacter irgensii 23-P]
Length = 184
Score = 263 bits (674), Expect = 7e-69, Method: Composition-based stats.
Identities = 78/180 (43%), Positives = 116/180 (64%), Gaps = 2/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ F D RG+F ++++ + +E F+QDN S S G +RGLHFQ+
Sbjct: 7 EIQDVYIIEPSIFGDERGYFLESFNLEKFEENIYPIKFLQDNESKSSK-GVLRGLHFQKT 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ QAKLVRCI GR+ D+AVD+R+ SPTYG V++E+S N Q+++P GFAHGF L
Sbjct: 66 PFDQAKLVRCIVGRVMDVAVDLRKGSPTYGKHVAIELSGENKKQLFVPRGFAHGFSVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YKV + Y+ E+D G+ + D+ ++I W L + + +SEKD++LPF +DSPF +
Sbjct: 126 TAVFAYKVDNTYAPEYDFGIRYNDEDLNIDWGLAENEV-QLSEKDKDLPFFKNLDSPFNF 184
>gi|325970221|ref|YP_004246412.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Spirochaeta sp. Buddy]
gi|324025459|gb|ADY12218.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Spirochaeta sp. Buddy]
Length = 180
Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats.
Identities = 76/168 (45%), Positives = 104/168 (61%), Gaps = 3/168 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V +++ R F D RG+F +TY+ + G+ + FVQDN S S G +RGLHFQ+
Sbjct: 10 DIEGVFVIEPRVFGDERGYFMETYNKADFHKAGINNEFVQDNQSKS-RKGVLRGLHFQKQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y QAKLVR G ++D+AVD+R++SPTYG +V + +SA Q +IP GFAHGF+ L
Sbjct: 69 -YPQAKLVRVTKGEVYDVAVDLRKDSPTYGKYVGVHLSAEKKNQFFIPRGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
E YK +FY E + + W D I I WP IL S+SEKD+ L
Sbjct: 128 EAEFTYKCDEFYHPEDEGSIRWDDPIIGIQWP-EIGILFSLSEKDKAL 174
>gi|194466818|ref|ZP_03072805.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus reuteri 100-23]
gi|194453854|gb|EDX42751.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus reuteri 100-23]
Length = 193
Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats.
Identities = 73/182 (40%), Positives = 107/182 (58%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I+ F D RG+F +TYS + K G+ F+QDN S S G +RGLHFQR
Sbjct: 10 KLQDVKIITPAVFGDHRGFFEETYSDRDFKAAGIDFNFIQDNQSLSTQAGVLRGLHFQRG 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ VD+R+ SPTY W +SA+N Q+ +P GFAHGF+TL
Sbjct: 70 KAAQTKLIRVVTGAVLDVIVDLRKGSPTYKQWEGYILSASNHRQLLVPRGFAHGFLTLTD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID--SPF 179
N +YK ++Y E D G++++ ++I WP+ + SEKD P L + + +PF
Sbjct: 130 NVNFVYKCDNYYDAEADGGISFKTPELNIDWPI-EFDKAITSEKDAAQPTLTEFEKDNPF 188
Query: 180 EY 181
Y
Sbjct: 189 VY 190
>gi|330966030|gb|EGH66290.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 181
Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 107/176 (60%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V IL+ + F D RG+F ++++++ ++ GL FVQDNHS S G +RGLH+Q
Sbjct: 7 QLPEVLILEPKVFGDERGFFYESFNARAFQQATGLTRQFVQDNHSRS-QRGVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQ KLVR G + D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L
Sbjct: 66 EN-AQGKLVRVTVGTVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+Y+ + +AW D + I W PS+S KDQ L D
Sbjct: 125 EHAEFLYKTTDYYTPSAERCIAWNDPDLAIDWQFDGE--PSLSAKDQQGKSLKDAD 178
>gi|63033905|gb|AAY28256.1| RmlC [Escherichia coli]
Length = 188
Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats.
Identities = 76/175 (43%), Positives = 111/175 (63%), Gaps = 4/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++ + +++ +ED RG+F ++Y+ K E +G FVQDNHS S G +RGLHFQ+
Sbjct: 7 KLDGLLVIEPTVYEDERGFFYESYNEKKFMETIGASIKFVQDNHSKSSK-GVLRGLHFQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PY QAKLVRCI G ++D+AVDIR++SPT+G W + +S N Q++IP GFAHGF+TL
Sbjct: 66 NPYEQAKLVRCIRGEVYDVAVDIRKDSPTFGQWFGVNLSDENKKQLWIPEGFAHGFITLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++Y+ + + W DK ++I WPL + + VS KDQ
Sbjct: 126 DVAEFVYKTTNYYAPASEYCLKWDDKDLNIQWPLKNAL--IVSSKDQKGKAFADF 178
>gi|326402834|ref|YP_004282915.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium multivorum
AIU301]
gi|326403405|ref|YP_004283486.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium multivorum
AIU301]
gi|325049695|dbj|BAJ80033.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium multivorum
AIU301]
gi|325050266|dbj|BAJ80604.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium multivorum
AIU301]
Length = 184
Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats.
Identities = 85/180 (47%), Positives = 114/180 (63%), Gaps = 1/180 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+++ V ++ +F DSRGWFS+T++ L LG + FVQDNHS S GTIRGLH Q
Sbjct: 5 LDLPGVMLITPPRFADSRGWFSETWNQARLAALGFTETFVQDNHSSSTRPGTIRGLHCQL 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRCI G I+D+AVDIR SP++G + E+SA NG Q++IP GF HGF T E
Sbjct: 65 APFAQGKLVRCIRGAIWDVAVDIRHGSPSFGRHAAAELSAANGRQLWIPPGFLHGFCTTE 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+TEV+YKVT Y + GV W D + + WP+ +S+KD LP L + + F
Sbjct: 125 PDTEVVYKVTAPYDKASERGVIWNDPDLALPWPVPAG-TALLSDKDNLLPRLAEAEPWFR 183
>gi|15890372|ref|NP_356044.1| dTDP-rhamnose-3,5-epimerase [Agrobacterium tumefaciens str. C58]
gi|11385991|gb|AAG35059.1|AF314183_1 dTDP-rhamnose-3,5-epimerase [Agrobacterium tumefaciens]
gi|15158589|gb|AAK88829.1| dTDP-rhamnose-3,5-epimerase [Agrobacterium tumefaciens str. C58]
Length = 189
Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats.
Identities = 84/179 (46%), Positives = 115/179 (64%), Gaps = 2/179 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ ++ + +F D+RG+FS+ + + +E FVQDN S S GT+RGLHFQ P
Sbjct: 8 ISGLKKIIPARFGDNRGYFSEVFKREWFRENVANVEFVQDNESLSAQAGTVRGLHFQTEP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVRCI GR+ D+AVDIR SPT+G W ++E+S NG Q+++P GFAHGFMTL +
Sbjct: 68 FAQGKLVRCIRGRLLDVAVDIRTGSPTFGQWAAVELSPENGEQLWVPAGFAHGFMTLVAD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
T + YKVT YS HD GV W D +I I WP + +S+KD P L+++ F Y
Sbjct: 128 TVISYKVTAPYSAAHDRGVKWDDPAIGINWP--NVADCVLSDKDAKQPLLSELPEYFTY 184
>gi|330505516|ref|YP_004382385.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas mendocina NK-01]
gi|328919802|gb|AEB60633.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas mendocina NK-01]
Length = 182
Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 111/176 (63%), Gaps = 4/176 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V IL+ + F D RG+F ++++++ E G+ FVQDNHS S G +RGLH+Q
Sbjct: 8 LPEVLILEPQVFGDERGFFYESFNARRFAEATGVTRDFVQDNHSRSAR-GVLRGLHYQLQ 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVR AG ++D+AVD+RR+SP +G WV + +SA N Q+++P GFAHGF+ L
Sbjct: 67 -QAQGKLVRVSAGEVYDVAVDVRRSSPNFGKWVGVHLSAENKRQLWVPEGFAHGFLVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E +YK TD+Y+ H+ + W D+ + I WPL + + P +S KDQ L ++
Sbjct: 126 YAEFLYKTTDYYAPAHERCIRWDDQQLAIDWPL-EGLTPQLSAKDQQGLSLTDAET 180
>gi|16264649|ref|NP_437441.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase protein
[Sinorhizobium meliloti 1021]
gi|1890602|emb|CAB01950.1| ExpA8 [Sinorhizobium meliloti]
gi|15140787|emb|CAC49301.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase protein WgaH
(formerly ExpA8) [Sinorhizobium meliloti 1021]
Length = 187
Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats.
Identities = 86/183 (46%), Positives = 122/183 (66%), Gaps = 2/183 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ ++ V + R+ D RG+FS+TY+++ L G+ +FVQDNHS+S GT+RGLH+Q
Sbjct: 7 LGLDGVLEIVPRRLGDERGFFSETYNAETLAAHGVAAIFVQDNHSYSAAAGTLRGLHYQL 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP AQAKLVR + GR+FD+ VDIR+ SPT+ WV+LE+SA QI +P GFAHG +TL+
Sbjct: 67 PPKAQAKLVRVVRGRVFDVVVDIRKGSPTFAKWVALELSAEKWNQILVPVGFAHGLVTLD 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
TEV+YKV++ YS EH+ + + D I I WP L +S KD+N P L++ FE
Sbjct: 127 PETEVLYKVSEHYSAEHERSIRYDDPEIGIGWPAATDRL-QLSAKDRNAPLLHE-SILFE 184
Query: 181 YDG 183
+
Sbjct: 185 FTA 187
>gi|239813764|ref|YP_002942674.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Variovorax paradoxus S110]
gi|239800341|gb|ACS17408.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Variovorax paradoxus S110]
Length = 182
Score = 263 bits (673), Expect = 9e-69, Method: Composition-based stats.
Identities = 74/175 (42%), Positives = 107/175 (61%), Gaps = 4/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +++ + F D+RG+F ++++ K E G FVQDNHS S G +RGLH+Q
Sbjct: 8 IPEVLVIEPKVFGDARGFFYESFNGKAFDEAVGRHVEFVQDNHSRSAK-GVLRGLHYQIQ 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVDIR++SPT+G WV +E+S +N Q+++P GFAHGF+ L
Sbjct: 67 QP-QGKLVRVVRGAVFDVAVDIRKSSPTFGKWVGVELSEDNHRQLWVPEGFAHGFLVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ H+ + W D + I WP P +S KDQ L Q +
Sbjct: 126 TAEFLYKTTDYYAPAHERCIKWDDAKLGIAWP-SVGAHPQLSAKDQAGAALIQAE 179
>gi|303230617|ref|ZP_07317367.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Veillonella atypica
ACS-049-V-Sch6]
gi|302514672|gb|EFL56664.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Veillonella atypica
ACS-049-V-Sch6]
Length = 178
Score = 263 bits (673), Expect = 9e-69, Method: Composition-based stats.
Identities = 80/172 (46%), Positives = 117/172 (68%), Gaps = 3/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V IL+ R F D RG+F ++++ ++L ELG+ FVQDN SFS + GT+RG+HFQ
Sbjct: 10 KLKGVYILEPRVFGDHRGYFFESWNERVLHELGIDINFVQDNQSFSAEQGTLRGIHFQTG 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQAKLVRC+ G + D+AVD+R +S TY W+S+E+SA+N Q+ IP GF HGF+TL
Sbjct: 70 EWAQAKLVRCVRGAVLDVAVDLRADSSTYLQWISVELSADNKRQLLIPRGFGHGFVTLTP 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ E +YK +FY VE + G W D +I + W + + P +S+KD+ LPF+
Sbjct: 130 DVEFLYKADNFYHVEAEGGYRWNDPTIGVEWGIEN---PILSDKDKQLPFIK 178
>gi|256820076|ref|YP_003141355.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga ochracea DSM
7271]
gi|256581659|gb|ACU92794.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga ochracea DSM
7271]
Length = 182
Score = 263 bits (673), Expect = 9e-69, Method: Composition-based stats.
Identities = 74/175 (42%), Positives = 107/175 (61%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ + F D RG+F +++S + EL VFVQDN S S G +RGLHFQ+P
Sbjct: 7 KIEGVVIIEPQVFFDGRGYFFESFSQQRFNELVSPTVFVQDNESQS-TYGVLRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQAKLVR + G + D+AVD+R++SPT+G + S+ ++ N Q +IP GFAHGF L
Sbjct: 66 PFAQAKLVRVVKGEVLDVAVDLRKDSPTFGQYESVILNEENKRQFFIPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YK ++Y+ E + V W D +I I W L ++ +SEKD+ P L +
Sbjct: 126 EAIFQYKCDNYYAPESEGSVRWDDPTIGIDWRLPAEVI-QLSEKDKKAPLLVEAK 179
>gi|226323946|ref|ZP_03799464.1| hypothetical protein COPCOM_01723 [Coprococcus comes ATCC 27758]
gi|225207495|gb|EEG89849.1| hypothetical protein COPCOM_01723 [Coprococcus comes ATCC 27758]
Length = 190
Score = 263 bits (673), Expect = 9e-69, Method: Composition-based stats.
Identities = 79/173 (45%), Positives = 106/173 (61%), Gaps = 3/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + +++ D RG+F +TY+ K ++E GL FVQDN S S +RGLHFQ+
Sbjct: 21 GIEGLCVIEPSVHGDQRGYFMETYNQKDMEEAGLTMKFVQDNQSGSGKA-VLRGLHFQKK 79
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR I G +FD+AVDIR+ S TYG W +E+S N Q YIP GFAHGF+ L
Sbjct: 80 -YPQGKLVRVIRGTVFDVAVDIRKGSATYGKWYGIELSEENKKQFYIPEGFAHGFLVLSD 138
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E YK TDFY + + G+AW D +I++ WP LD + +SEKD+ L +
Sbjct: 139 QAEFCYKCTDFYHPDDEGGIAWNDPTINVAWPELD-VPYRMSEKDKKWGRLGE 190
>gi|160893016|ref|ZP_02073804.1| hypothetical protein CLOL250_00554 [Clostridium sp. L2-50]
gi|156865099|gb|EDO58530.1| hypothetical protein CLOL250_00554 [Clostridium sp. L2-50]
Length = 200
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 80/188 (42%), Positives = 105/188 (55%), Gaps = 18/188 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ DSRG+F +TY+ K ++E GL VFVQDN S S G +RGLHFQ+
Sbjct: 11 IEGLYIIEPAVHGDSRGYFMETYNQKDMEENGLNMVFVQDNQSMS-TKGVLRGLHFQKE- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR I G ++D+AVD+R S TYG W +E++ N Q YI GFAHGF+ L
Sbjct: 69 FPQGKLVRVIKGAVYDVAVDLRSGSETYGKWYGVELTEENKKQFYISEGFAHGFLVLSDT 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEKD 166
E YKVTDFY + G+AW D I I WP L D ++S+KD
Sbjct: 129 AEFCYKVTDFYHPGDEGGLAWNDPEIGIEWPKVFGEYQGNASAEGYHLEDGTALNLSDKD 188
Query: 167 QNLPFLNQ 174
Q L +
Sbjct: 189 QKWLGLKE 196
>gi|254243955|ref|ZP_04937277.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa 2192]
gi|296392019|ref|ZP_06881494.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa PAb1]
gi|126197333|gb|EAZ61396.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas aeruginosa 2192]
Length = 181
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 79/177 (44%), Positives = 106/177 (59%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + R F D RG+F ++Y+ + +E G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSAR-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
AQ KLVR G +FD+AVD+RR SPT+G WV +SA N Q++IP GFAHGF+ L
Sbjct: 65 IR-QAQGKLVRATLGEVFDVAVDLRRGSPTFGHWVGERLSAENKRQMWIPAGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TDF++ EH+ + W D + I WPL D P +SEKD+ D
Sbjct: 124 SEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWPLQDA--PLLSEKDRQGKAFADAD 178
>gi|29345874|ref|NP_809377.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides thetaiotaomicron
VPI-5482]
gi|29337767|gb|AAO75571.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides thetaiotaomicron
VPI-5482]
Length = 189
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 76/180 (42%), Positives = 108/180 (60%), Gaps = 2/180 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F+D RG+F +++S + E + FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IEGVFIIEPRLFKDDRGYFFESFSQRKFNEKVRKVNFVQDNESKSS-YGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLVR I G + D+AVDIR+ SPT+G +VS+E++ +N Q +IP GFAHGF L
Sbjct: 67 YAQSKLVRVIKGAVLDVAVDIRKGSPTFGKYVSVELTEDNHRQFFIPRGFAHGFSVLTDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK +FY+ + + +AW D + I W + +SEKD + L F Y+
Sbjct: 127 VIFQYKCDNFYAPQSEGALAWDDPDLGIDWRVP-ANEIVLSEKDNHHELLKDASWLFNYN 185
>gi|296114300|ref|ZP_06832954.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gluconacetobacter hansenii
ATCC 23769]
gi|295979061|gb|EFG85785.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gluconacetobacter hansenii
ATCC 23769]
Length = 186
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 75/179 (41%), Positives = 104/179 (58%), Gaps = 1/179 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V ++ +F D+RG+FS+TY+ + + G+ FVQDN S S G +RGLH Q
Sbjct: 6 LAIPDVILVTPARFGDTRGFFSETYNLHRMADAGIHAPFVQDNQSLSRHKGVVRGLHCQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC G I+D+AVD R SPTYG WV+ E+S +N Q+++P GF HGF+T+
Sbjct: 66 APHAQGKLVRCTRGAIWDVAVDARMGSPTYGQWVAAELSEDNWSQLWLPPGFLHGFVTMS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
NTEV YK T Y + V W + I WP+ +S+KD+ P F
Sbjct: 126 DNTEVQYKCTSLYDKASERAVIWNCPELKIDWPIA-QEDAILSDKDKVAPGFAAAHGWF 183
>gi|227543972|ref|ZP_03974021.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus reuteri
CF48-3A]
gi|300909571|ref|ZP_07127032.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus reuteri SD2112]
gi|227186033|gb|EEI66104.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus reuteri
CF48-3A]
gi|300893436|gb|EFK86795.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus reuteri SD2112]
Length = 193
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 73/182 (40%), Positives = 107/182 (58%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I+ F D RG+F +TYS + K G+ F+QDN S S G +RGLHFQR
Sbjct: 10 KLQDVKIITPAVFGDHRGFFEETYSDRDFKAAGIDFNFIQDNQSLSTHAGVLRGLHFQRG 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ VD+R+ SPTY W +SA+N Q+ +P GFAHGF+TL
Sbjct: 70 KAAQTKLIRVVTGAVLDVIVDLRKGSPTYKQWEGYILSASNHRQLLVPRGFAHGFLTLTD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID--SPF 179
N +YK ++Y E D G++++ ++I WP+ + SEKD P L + + +PF
Sbjct: 130 NVNFVYKCDNYYDAEADGGISFKTPELNIDWPI-EFDKAITSEKDAAQPTLTEFEKDNPF 188
Query: 180 EY 181
Y
Sbjct: 189 VY 190
>gi|320162336|ref|YP_004175561.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anaerolinea thermophila
UNI-1]
gi|319996190|dbj|BAJ64961.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anaerolinea thermophila
UNI-1]
Length = 182
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 79/176 (44%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V IL+ + F D+RG+F +T+ + LGL FVQDNHS S G +RGLH+Q
Sbjct: 8 IPEVMILEPQVFRDARGFFMETFHEEKFAALGLPTRFVQDNHSAS-RRGVLRGLHYQIQ- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLVR I+G +FD+AVD+RR+SPT+G WV +SA N ++IP GFAHGF+ L
Sbjct: 66 QAQGKLVRVISGEVFDVAVDLRRSSPTFGQWVGEVLSAENHRMMWIPAGFAHGFLVLSDW 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
EV+YK TDFY+ + + + W D ++ + W + P +SEKDQ L+Q ++
Sbjct: 126 AEVLYKTTDFYAPQWERTLLWNDPAVGVRWLISPGEQPLLSEKDQRGLPLSQCETY 181
>gi|253567875|ref|ZP_04845286.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 1_1_6]
gi|251841948|gb|EES70028.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 1_1_6]
Length = 189
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 76/180 (42%), Positives = 108/180 (60%), Gaps = 2/180 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F+D RG+F +++S + E + FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IEGVFIIEPRLFKDDRGYFFESFSQREFNEKVRKVNFVQDNESKSS-YGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLVR I G + D+AVDIR+ SPT+G +VS+E++ +N Q +IP GFAHGF L
Sbjct: 67 YAQSKLVRVIKGAVLDVAVDIRKGSPTFGKYVSVELTEDNHRQFFIPRGFAHGFSVLTDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK +FY+ + + +AW D + I W + +SEKD + L F Y+
Sbjct: 127 VIFQYKCDNFYAPQSEGALAWDDPDLGIDWRVP-ANEIVLSEKDNHHELLKDASWLFNYN 185
>gi|227534051|ref|ZP_03964100.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|227188323|gb|EEI68390.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
Length = 195
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 75/180 (41%), Positives = 109/180 (60%), Gaps = 1/180 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V++++T F D+RG+F++TY+ + E G+ + F QDN S S + G +RGLH+Q
Sbjct: 14 KLKDVKLVETDVFGDNRGFFTETYTREKFIEAGITNDFNQDNQSLSAEAGVLRGLHYQYG 73
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVR + G + D+ VDIR+ SPTYG W +S N Q+ +P GFAHGF+TL
Sbjct: 74 KDAQTKLVRVVTGVVEDVLVDIRKGSPTYGQWEGYILSEFNHRQLLVPKGFAHGFITLTN 133
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N YKV +Y+ + D G+A+ D + I WP+ L +SEKD + P L D+ F Y
Sbjct: 134 NVNFCYKVEGYYAPDADRGIAFDDPDLGIDWPMSTDHL-IMSEKDLHHPQLKDADNNFVY 192
>gi|319638873|ref|ZP_07993631.1| DTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase [Neisseria mucosa C102]
gi|317399777|gb|EFV80440.1| DTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase [Neisseria mucosa C102]
Length = 185
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 70/173 (40%), Positives = 105/173 (60%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSSK-GVLRGLHYQTEN 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 72 -TQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ + + + W D ++ I WPL P++S KD L +
Sbjct: 131 AEFVYKCTDYYNPKAEHSLIWNDPTVGIDWPLQGE--PNLSPKDLAGKVLAEA 181
>gi|302382272|ref|YP_003818095.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brevundimonas subvibrioides
ATCC 15264]
gi|302192900|gb|ADL00472.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brevundimonas subvibrioides
ATCC 15264]
Length = 205
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 102/185 (55%), Positives = 131/185 (70%), Gaps = 1/185 (0%)
Query: 7 RILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+ ++R+F D RGWF++TYS + L + G+ D FVQDN S S GT+RG+HFQRPP+AQA
Sbjct: 21 FLYESRRFGDDRGWFTETYSERALADRGVSDRFVQDNQSLSIAPGTVRGIHFQRPPFAQA 80
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVRC+ GRI D AVD+RR SPTYG WVS E++A+NGLQ+Y+P G+ H F+TLE TEV+
Sbjct: 81 KLVRCLRGRIMDYAVDLRRGSPTYGDWVSAELTADNGLQLYVPVGYGHAFVTLEPRTEVV 140
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLPL 186
YKV Y+ + D G+ W D I I W L + P +SEKD+ LP L DSPF+YDG PL
Sbjct: 141 YKVNAVYAADCDGGIVWDDPDIGIEWSLPPSG-PLLSEKDRQLPRLADFDSPFDYDGRPL 199
Query: 187 LSLNM 191
L
Sbjct: 200 EPLPP 204
>gi|330989098|gb|EGH87201.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 181
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 108/176 (61%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V IL+ + F D RG+F ++++++ + GL FVQDNHS S G +RGLH+Q
Sbjct: 7 KLPEVLILEPKVFGDERGFFYESFNARAFQAATGLTREFVQDNHSRS-QQGVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQ KLVR G++ D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L
Sbjct: 66 EN-AQGKLVRVTVGKVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+Y+ + +AW D + I W P++S KDQ L + D
Sbjct: 125 EHAEFLYKTTDYYTPSAERCIAWNDPDLAINWQFDGQ--PNLSAKDQQGKRLKEAD 178
>gi|30248687|ref|NP_840757.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosomonas europaea ATCC
19718]
gi|30180282|emb|CAD84589.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosomonas europaea ATCC
19718]
Length = 181
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 71/175 (40%), Positives = 107/175 (61%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +++ + F D RG+F ++++ +E +G + FVQDNHS S +RGLH+Q
Sbjct: 8 IPEVVLIEPKVFGDERGFFFESFNQARFEETVGREINFVQDNHSRSVK-NVLRGLHYQIQ 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q++IP GFAHGF+ L
Sbjct: 67 QP-QGKLVRVVQGEVFDVAVDLRKSSPTFGRWVGQVLSAENKHQLWIPEGFAHGFVVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ H+ + W D ++I WPL I P +S KD ++ +
Sbjct: 126 TAEFLYKTTDYYAPAHERCLLWNDPVLNIQWPL--GIAPVLSAKDTQGKPFSEAE 178
>gi|90962542|ref|YP_536458.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus salivarius
UCC118]
gi|90821736|gb|ABE00375.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus salivarius
UCC118]
Length = 193
Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats.
Identities = 72/182 (39%), Positives = 109/182 (59%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+++ F D+RG+F+++YS + K G+ F+QDNHS S G +RGLHFQR
Sbjct: 10 KLQDVKLITPAVFGDNRGFFTESYSDRDFKAAGIDFDFIQDNHSLSTQAGVLRGLHFQRG 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R G + D+ VD+R+ SPTY W +S +N Q+ +P G+AHGF+TL
Sbjct: 70 KAAQTKLIRVATGAVLDVIVDLRKGSPTYKQWEGYILSESNHRQLLVPKGYAHGFVTLTD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID--SPF 179
N +YK ++Y E D G++++ ++I WP+ D SEKD N P L + + +PF
Sbjct: 130 NVNFLYKCDNYYDAEADGGISFKTPELNIDWPI-DLDKAITSEKDANQPTLTEFEKGNPF 188
Query: 180 EY 181
Y
Sbjct: 189 VY 190
>gi|260460165|ref|ZP_05808417.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mesorhizobium opportunistum
WSM2075]
gi|259033810|gb|EEW35069.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mesorhizobium opportunistum
WSM2075]
Length = 184
Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats.
Identities = 84/176 (47%), Positives = 117/176 (66%), Gaps = 1/176 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I+ V + ++ D+RG+F +TY+++ + G+ VFVQDNHS+S G +RGLH+Q
Sbjct: 7 LGIDGVLEIVPKRHGDARGFFVETYNAERFAQAGIDLVFVQDNHSYSAAAGVLRGLHYQL 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KL+R I G + D+AVDIRR S T+G WV+LE+SA G QI +P GFAHGF+TL
Sbjct: 67 APRAQDKLLRVIRGSVLDVAVDIRRGSKTFGKWVALEVSAKKGNQILVPKGFAHGFVTLV 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+TEV+YKVTD YS EHD + + D +I I WP L + +S+KD P L +
Sbjct: 127 PDTEVLYKVTDTYSPEHDRSICFDDPAIGIEWPSLASGF-QLSDKDLKAPLLAAAE 181
>gi|330954841|gb|EGH55101.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae Cit 7]
Length = 181
Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats.
Identities = 76/176 (43%), Positives = 108/176 (61%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V IL+ + F D RG+F +++++K + GL FVQDNHS S G +RGLH+Q
Sbjct: 7 KLPEVLILEPKVFGDERGFFYESFNAKAFQAATGLTREFVQDNHSRS-QRGVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQ KLVR G++ D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L
Sbjct: 66 EN-AQGKLVRVTVGKVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+Y+ + +AW D + I W PS+S KDQ L + D
Sbjct: 125 EHAEFLYKTTDYYTPSAERCIAWNDADLAIDWQFDGQ--PSLSAKDQQGKRLKEAD 178
>gi|20502683|gb|AAM22546.1|AF343089_3 putative dTDP-4-dehydrorhamnose 3,5-epimerase [Aeromonas
hydrophila]
Length = 183
Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats.
Identities = 74/179 (41%), Positives = 99/179 (55%), Gaps = 5/179 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ + F D RG+F +TY K G+ FVQDN S S +RGLHFQ+
Sbjct: 7 KIADLLIIEPKVFGDERGFFYETYQEARYKAAGITPDFVQDNRSRSTQ-NVLRGLHFQKT 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLV GR+FD+AVD+R +SPT+G S+ ++ N +Q YIP GFAHGF L
Sbjct: 66 -KPQGKLVTVTQGRVFDVAVDLRPDSPTFGQHESVLLTGENKIQFYIPPGFAHGFCVLSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ YK TD+Y +SG+ W D ++ I WPL P +S KD P L QI
Sbjct: 125 TADFQYKCTDYYDPTDESGLLWNDPALGIEWPLT---APLLSPKDSVQPTLAQIRDNLV 180
>gi|60681053|ref|YP_211197.1| putative dTDP-4-dehydrorhamnose 3,5 epimerase [Bacteroides fragilis
NCTC 9343]
gi|60492487|emb|CAH07257.1| putative dTDP-4-dehydrorhamnose 3,5 epimerase [Bacteroides fragilis
NCTC 9343]
Length = 191
Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats.
Identities = 73/180 (40%), Positives = 107/180 (59%), Gaps = 2/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + I++ R F D RG+F ++++ + E + +FVQDN S S G IRGLHFQ+P
Sbjct: 7 DIKGLVIIEPRLFRDERGYFFESFNQNVFIEKVCKTMFVQDNESKSS-YGVIRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR + G + D+AVDIR+ SPT+G VS+E++ +N Q +IP GFAHGF L
Sbjct: 66 PFAQSKLVRVVKGSVLDVAVDIRKGSPTFGKHVSVELTEDNHRQFFIPRGFAHGFSVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +FY+ + + +AW D + I W + +SEKD L F+Y
Sbjct: 126 EVVFQYKCDNFYAPQCEGAIAWNDPDLGIDWKIP-MEEVILSEKDSCHSALKDAAWLFDY 184
>gi|237714662|ref|ZP_04545143.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D1]
gi|262406527|ref|ZP_06083076.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_22]
gi|294806945|ref|ZP_06765768.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides xylanisolvens SD
CC 1b]
gi|229445431|gb|EEO51222.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D1]
gi|262355230|gb|EEZ04321.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_22]
gi|294445832|gb|EFG14476.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides xylanisolvens SD
CC 1b]
Length = 189
Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats.
Identities = 75/180 (41%), Positives = 112/180 (62%), Gaps = 2/180 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F+D RG+F +++S + E + FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IEGVVIIEPRLFKDDRGYFFESFSQREFTEKVRKVDFVQDNESKSS-YGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLVR I G + D+AVDIR+ SPT+G V++E++ N Q +IP GFAHGF+ L
Sbjct: 67 YAQSKLVRVIKGSVLDVAVDIRKGSPTFGEHVAVELTEENHRQFFIPRGFAHGFVVLTEE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK +FY+ + + +AW D ++ I W + + +SEKD++ L + F+Y+
Sbjct: 127 VIFQYKCDNFYAPQCEGALAWDDPALKIDWKVPADKI-ILSEKDKHHERLEEASWLFDYN 185
>gi|325133154|gb|EGC55825.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis M6190]
gi|325138770|gb|EGC61322.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
ES14902]
gi|325143303|gb|EGC65639.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
961-5945]
gi|325197380|gb|ADY92836.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis G2136]
Length = 179
Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats.
Identities = 71/173 (41%), Positives = 105/173 (60%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLHYQTEN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 67 -TQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ E + + W D ++ I WPL P++S KD L +
Sbjct: 126 AEFVYKCTDYYNPEAEHSLIWNDPTVGIDWPLQGE--PNLSPKDLAGKVLAEA 176
>gi|332879845|ref|ZP_08447534.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332682222|gb|EGJ55130.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 182
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 73/178 (41%), Positives = 108/178 (60%), Gaps = 2/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ + F D RG+F +++S + E FVQDN S S G +RGLHFQ+P
Sbjct: 7 KIEGVVIIEPQVFFDGRGYFFESFSQQRFNEQVAPITFVQDNESKSS-YGVLRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ Q+KLVR + G++ D+AVD+RRNSPT+G + S+ ++ N Q ++P GFAHGF L
Sbjct: 66 PFTQSKLVRVVKGKVLDVAVDLRRNSPTFGQYESVLLTEENKRQFFVPQGFAHGFAVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
YK ++Y+ + + V W D SI+I W L +SEKD+N P L +++ F
Sbjct: 126 EAIFQYKCDNYYAPQSEGSVRWDDPSINIDWQLP-IADVLLSEKDKNAPLLEALETIF 182
>gi|311109417|ref|YP_003982270.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Achromobacter xylosoxidans
A8]
gi|310764106|gb|ADP19555.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Achromobacter xylosoxidans
A8]
Length = 180
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 77/178 (43%), Positives = 109/178 (61%), Gaps = 5/178 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +L+ R D RG+F ++++ + + GLQ FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVLLLEPRVLGDERGFFFESFNQAVFEAATGLQRNFVQDNHSRSAR-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KL+R AG IFD+AVD+RR+SP++G WV +SA N Q++IP GFAHGF+TL
Sbjct: 65 VEQP-QGKLMRVCAGEIFDVAVDLRRDSPSFGQWVGTLLSAENKRQVWIPEGFAHGFLTL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
EV+YK TD+Y+ +H+ + W D + I WP P +SEKD+N +
Sbjct: 124 SDYAEVLYKTTDYYAPQHERCIRWDDPQLAIAWPCQQP--PLLSEKDRNGAPFADAPA 179
>gi|158423458|ref|YP_001524750.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Azorhizobium caulinodans ORS
571]
gi|158330347|dbj|BAF87832.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Azorhizobium caulinodans ORS
571]
Length = 185
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 88/181 (48%), Positives = 114/181 (62%), Gaps = 3/181 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V ++ +F D RG+FS+TY L GL VF+QDN S S G IRGLHFQ
Sbjct: 7 LDIPEVVLITPPRFADPRGYFSETYKKSALDAAGLNHVFIQDNESLSTVPGIIRGLHFQA 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP++QAKLVR ++G I+D+AVDIR+ SPTYG WV ++A G QI IP GFAH F TL
Sbjct: 67 PPFSQAKLVRVVSGAIYDVAVDIRKGSPTYGKWVGATLTAEKGEQILIPHGFAHAFCTLT 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ V+YKV YS + G+ W D + I WP+ + VSEKD+ LP +DSPF
Sbjct: 127 PDVRVLYKVDGAYSKASEGGIIWNDPDLAIDWPVSNA---LVSEKDEILPRFKDLDSPFI 183
Query: 181 Y 181
Y
Sbjct: 184 Y 184
>gi|254253075|ref|ZP_04946393.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia dolosa AUO158]
gi|124895684|gb|EAY69564.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia dolosa AUO158]
Length = 215
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 68/175 (38%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F ++++++ E FVQDNHS S G +RGLH+Q
Sbjct: 42 LPEVKIIEPKVFGDARGYFYESFNAREFAEHVAAGVEFVQDNHSLSAK-GVLRGLHYQVR 100
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVDIR+ SP +G WV + +S N Q++IP GFAHGF+ L
Sbjct: 101 -HAQGKLVRVVQGEVFDVAVDIRKRSPNFGQWVGVVLSEENHRQLWIPPGFAHGFVVLSD 159
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD++ E++ + W D I I WP+ + P ++ KD L++ +
Sbjct: 160 AAQFLYKTTDYWYPEYERCIVWNDPEIGIEWPV--DVEPLLAAKDAAGVRLSEAE 212
>gi|225077086|ref|ZP_03720285.1| hypothetical protein NEIFLAOT_02139 [Neisseria flavescens
NRL30031/H210]
gi|241758982|ref|ZP_04757094.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria flavescens SK114]
gi|224951643|gb|EEG32852.1| hypothetical protein NEIFLAOT_02139 [Neisseria flavescens
NRL30031/H210]
gi|241320803|gb|EER57036.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria flavescens SK114]
Length = 184
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 70/173 (40%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCDRTFVQENHSKSGK-GVLRGLHYQTEN 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 72 -TQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ + + + W D ++ I WPL P++S KD L +
Sbjct: 131 AEFVYKCTDYYNPKAEHSLIWNDPTVGIDWPLQGE--PNLSPKDLAGKVLAEA 181
>gi|308388300|gb|ADO30620.1| dTDP-D-glucose 4,6-dehydratase [Neisseria meningitidis alpha710]
Length = 180
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 72/175 (41%), Positives = 108/175 (61%), Gaps = 4/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D RG+F +T+ + ++ + FVQ+NHS S G +RGLH+Q
Sbjct: 9 IPDVKLLEPKVFGDERGFFMETFRDEWFRQNVAERTFVQENHSKSTQ-GVLRGLHYQTEN 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR ++G +FD+AVD+RR+SPT+G WV +SA+N Q+++P GFAHGF L
Sbjct: 68 -TQGKLVRVVSGEVFDVAVDMRRDSPTFGHWVGEVLSADNKRQLWVPEGFAHGFYVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E +YK TD+Y+ + + W D ++ I WPLL PS+S KD L + +
Sbjct: 127 AEFVYKCTDYYNPNAEHSLIWNDATVGIDWPLLGE--PSLSAKDLAGKMLAEAAT 179
>gi|313202900|ref|YP_004041557.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Paludibacter propionicigenes
WB4]
gi|312442216|gb|ADQ78572.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paludibacter propionicigenes
WB4]
Length = 190
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 73/181 (40%), Positives = 114/181 (62%), Gaps = 2/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I++ F D RG+F +++S K +E + VFVQDN S S G +RGLH+Q+P
Sbjct: 7 KLEGVCIIEPVVFADERGYFFESFSQKEFEEKVCKTVFVQDNESKS-TYGVLRGLHYQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ+KLVR + G++ D+A+DIRR SPT+G V++E+S N Q ++P GFAHGF+ L
Sbjct: 66 PYAQSKLVRVVKGKVLDVALDIRRGSPTFGQHVAVELSEENKRQFFVPRGFAHGFVVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ YK +FY+ +++ +AW D + I W + + +SEKD++ L ++ F+Y
Sbjct: 126 DVIFQYKCDNFYAPKNEGALAWDDADLSIDWKIPSGDV-ILSEKDKHHSSLKEMKLVFDY 184
Query: 182 D 182
Sbjct: 185 K 185
>gi|227891399|ref|ZP_04009204.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus salivarius ATCC
11741]
gi|301299657|ref|ZP_07205914.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|227866788|gb|EEJ74209.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus salivarius ATCC
11741]
gi|300215157|gb|ADJ79573.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus salivarius CECT
5713]
gi|300852751|gb|EFK80378.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 193
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 72/182 (39%), Positives = 109/182 (59%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+++ F D+RG+F+++YS + K G+ F+QDNHS S G +RGLHFQR
Sbjct: 10 KLQDVKLITPAVFGDNRGFFTESYSDRDFKAAGIDFDFIQDNHSLSTQAGVLRGLHFQRG 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R G + D+ VD+R+ SPTY W +S +N Q+ +P G+AHGF+TL
Sbjct: 70 KAAQTKLIRVATGAVLDVIVDLRKGSPTYKQWEGYILSESNHRQLLVPKGYAHGFVTLTD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID--SPF 179
N +YK ++Y E D G++++ ++I WP+ D SEKD N P L + + +PF
Sbjct: 130 NVNFLYKCDNYYDAEADGGISFKTPELNIDWPI-DLDKAITSEKDANQPTLTEFEKDNPF 188
Query: 180 EY 181
Y
Sbjct: 189 VY 190
>gi|330970569|gb|EGH70635.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 181
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 76/176 (43%), Positives = 108/176 (61%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V IL+ + F D RG+F +++++K + GL FVQDNHS S G +RGLH+Q
Sbjct: 7 KLPEVLILEPKVFGDERGFFYESFNAKAFQAATGLTREFVQDNHSRS-QRGVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQ KLVR G++ D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L
Sbjct: 66 EN-AQGKLVRVTVGKVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
N E +YK TD+Y+ + +AW D + I W P++S KDQ L + D
Sbjct: 125 ENAEFLYKTTDYYTPSAERCIAWDDAELAIDWQFDGQ--PNLSAKDQQGKRLKEAD 178
>gi|307153968|ref|YP_003889352.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 7822]
gi|306984196|gb|ADN16077.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 7822]
Length = 180
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 72/176 (40%), Positives = 103/176 (58%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I++ + F D RG+F ++++ K ++ + FVQDNHS S +RGLH+Q
Sbjct: 7 EIPDVLIIEPKVFGDDRGFFYESFNQKAFQDKTEIITDFVQDNHSRSLK-NVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G +FD+AVDIR +SPT+G WV +SA N Q +IP GFAHGF+ L
Sbjct: 66 QQP-QGKLVRVVVGEVFDVAVDIRSSSPTFGQWVGCLLSAENKRQFWIPAGFAHGFLVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ E++ + W D + I WPL P +S KD L + +
Sbjct: 125 EAAEFLYKTTDYYAPEYERSILWNDPDLAIDWPLQGE--PILSNKDLAGKLLKEAE 178
>gi|296447932|ref|ZP_06889841.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylosinus trichosporium
OB3b]
gi|296254569|gb|EFH01687.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylosinus trichosporium
OB3b]
Length = 184
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 87/178 (48%), Positives = 118/178 (66%), Gaps = 1/178 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V+I+ +KF D RG+FS+T++ GL FVQDNHS S + G IRGLHFQ P
Sbjct: 8 LAGVKIVTPKKFGDERGFFSETHNQNKWDAHGLHYRFVQDNHSLSREVGVIRGLHFQTAP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVR + GRI D+AVDIRR+SPT+G V++E+SA N Q+ +P GFAH F TLE +
Sbjct: 68 FAQDKLVRVVRGRILDVAVDIRRSSPTFGRHVAVELSAENWRQLLVPIGFAHAFCTLEPD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
TEV YKVT+FYS +D G+A+ D + I WP+ +S+KD+ P L + F+
Sbjct: 128 TEVFYKVTNFYSGANDRGLAFDDPDLGIDWPVA-LERAVLSDKDRRWPRLRDLADAFD 184
>gi|21672269|gb|AAM74476.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aeromonas hydrophila]
Length = 183
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 74/179 (41%), Positives = 99/179 (55%), Gaps = 5/179 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ + F D RG+F +TY K G+ FVQDN S S +RGLHFQ+
Sbjct: 7 KIADLLIIEPKVFGDERGFFYETYQEARYKAAGITPDFVQDNRSRSTQ-NVLRGLHFQKT 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLV GR+FD+AVD+R +SPT+G S+ ++ N +Q YIP GFAHGF L
Sbjct: 66 -KPQGKLVTVAQGRVFDVAVDLRPDSPTFGQHESVLLTGENKIQFYIPPGFAHGFCVLSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ YK TD+Y +SG+ W D ++ I WPL P +S KD P L QI
Sbjct: 125 TADFQYKCTDYYDPTDESGLLWNDPALGIEWPLT---APLLSPKDSVQPTLAQIRDNLV 180
>gi|193213370|ref|YP_001999323.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobaculum parvum NCIB
8327]
gi|193086847|gb|ACF12123.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobaculum parvum NCIB
8327]
Length = 185
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 71/175 (40%), Positives = 107/175 (61%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V + + + F D RGWF +++ + ++ FVQDN SFS G +RGLH+Q+P
Sbjct: 7 SLPGVLVFEPQVFGDDRGWFFESFRQDMFEQHAGSHRFVQDNESFS-RHGVVRGLHYQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY Q KLVR G + D+AVDIR+ SPT+G + +S NN +++P GFAHGF L
Sbjct: 66 PYTQGKLVRASRGEVLDVAVDIRKGSPTFGQHTAQLLSENNRRMMWLPPGFAHGFAVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ YK T +Y+ HD+G+ W D +I I W L + + S+S+KD P L++I+
Sbjct: 126 SAVFSYKCTGYYAPTHDAGIRWNDPAIGIDWRLSEQEI-SLSDKDLRQPLLHEIE 179
>gi|56476693|ref|YP_158282.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aromatoleum aromaticum EbN1]
gi|56312736|emb|CAI07381.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Aromatoleum aromaticum EbN1]
Length = 181
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 72/176 (40%), Positives = 115/176 (65%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V +++ + F D+RG+F ++++++ ++ GL + FVQDNHS S G +RGLH+Q
Sbjct: 7 SIPDVLLIEPKVFGDARGFFFESFNARAFRDATGLDETFVQDNHSRSAR-GVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G +FD+AVD+RR SP++G W +E+S +N Q++IP GFAHGF+ L
Sbjct: 66 RQP-QGKLVRVVRGAVFDVAVDLRRASPSFGRWAGVELSEDNHRQLWIPPGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + +YK TD+Y+ EH+ +AW D ++ I WPL + P +S KD+ L +
Sbjct: 125 ESADFLYKTTDYYAPEHERCLAWNDPAVGIEWPL--GVAPLLSGKDREGKLLAACE 178
>gi|224023786|ref|ZP_03642152.1| hypothetical protein BACCOPRO_00502 [Bacteroides coprophilus DSM
18228]
gi|224017008|gb|EEF75020.1| hypothetical protein BACCOPRO_00502 [Bacteroides coprophilus DSM
18228]
Length = 189
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 73/181 (40%), Positives = 109/181 (60%), Gaps = 2/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I IL+ R F D RG+F +++S + E + FVQDN S S G +RGLHFQ+P
Sbjct: 7 SIEGPLILEPRIFRDDRGYFFESFSQRTFNEEVREIHFVQDNESKSS-YGVVRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ Q+KLVR I G + D+AVDIRR SPT+G +V +E++ N Q ++P GFAHGF L
Sbjct: 66 PFTQSKLVRVIQGAVLDVAVDIRRGSPTFGQYVKVELTGENHRQFFVPRGFAHGFSVLTD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +FY+ + + +AW D + I W + + +SEKD++ P L + F++
Sbjct: 126 EVVFQYKCDNFYAPQSEGAIAWDDPDLGIDWQIPADKV-ILSEKDKHHPRLKDAEWLFDW 184
Query: 182 D 182
+
Sbjct: 185 N 185
>gi|60418017|dbj|BAD90657.1| polysaccharide synthesis enzyme [Acetobacter tropicalis]
Length = 185
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 77/181 (42%), Positives = 105/181 (58%), Gaps = 1/181 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V ++ +F D+RG+FS+TY+ +++ G+ FVQDN S S G +RGLH Q
Sbjct: 6 LAIPDVILVTPPRFGDNRGFFSETYNIDRMRDAGITQPFVQDNQSLSRQKGVVRGLHCQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC G I+D+A+D R SPTYG WV+ E+S N Q++IP GF HGF TL
Sbjct: 66 DPYAQGKLVRCTKGAIWDVAIDARTGSPTYGKWVAAELSEENWSQLWIPPGFLHGFCTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
N EV YK T Y+ + V W + I WP+ +SEKD P + F+
Sbjct: 126 ENAEVQYKCTGLYNKASERAVIWNSAELAIDWPVKPE-DAILSEKDLEAPEFSAAKGWFQ 184
Query: 181 Y 181
+
Sbjct: 185 F 185
>gi|213962325|ref|ZP_03390588.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga sputigena
Capno]
gi|213954991|gb|EEB66310.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga sputigena
Capno]
Length = 182
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 70/177 (39%), Positives = 106/177 (59%), Gaps = 2/177 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I++ + F D RG+F +++S + E FVQDN S S G +RGLHFQ+P
Sbjct: 7 KLEGVVIIEPQVFFDDRGYFFESFSQQRFNEQVAPITFVQDNESKSS-YGVLRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR + G++ D+AVD+R+ SPT+G + S+ +S N Q +IP GFAHGF L
Sbjct: 66 PFAQSKLVRVVKGKVLDVAVDLRKGSPTFGQYESVVLSEENKRQFFIPQGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
YK ++Y+ + + V W D +I I W L + + +S KD+ P L+Q+
Sbjct: 126 EAIFQYKCDNYYAPQSEGSVRWNDPTIAIDWQLPEKDI-ILSAKDEKAPLLSQLTIN 181
>gi|298375207|ref|ZP_06985164.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_1_19]
gi|301310780|ref|ZP_07216719.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 20_3]
gi|298267707|gb|EFI09363.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_1_19]
gi|300832354|gb|EFK62985.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 20_3]
Length = 193
Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats.
Identities = 78/180 (43%), Positives = 115/180 (63%), Gaps = 2/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V I++ + F+D+RG+F +++S + +E + FVQDN S S G +RGLHFQ+P
Sbjct: 7 DIEGVVIIEPKVFDDARGYFFESFSQREFEEKVRKINFVQDNESMSS-YGVMRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ Q+KLVRC+ G + D+AVDIR+ SPTYG V++E+S N Q ++P GFAHGF L
Sbjct: 66 PFTQSKLVRCVKGCVLDVAVDIRKGSPTYGKHVAVELSEENHRQFFVPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +FY+ + D G+ +D+S+ I W + + +SEKD P L DSPF+Y
Sbjct: 126 IAVFQYKCDNFYAPQADGGIRIKDESLGIDWRIPMDKV-LLSEKDIKHPCLEDFDSPFDY 184
>gi|148259626|ref|YP_001233753.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium cryptum JF-5]
gi|148260219|ref|YP_001234346.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium cryptum JF-5]
gi|146401307|gb|ABQ29834.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium cryptum JF-5]
gi|146401900|gb|ABQ30427.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium cryptum JF-5]
Length = 184
Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats.
Identities = 85/180 (47%), Positives = 113/180 (62%), Gaps = 1/180 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+++ V ++ +F DSRGWFS+T++ L LG + FVQDNHS S GTIRGLH Q
Sbjct: 5 LDLPGVMLITPPRFADSRGWFSETWNQARLAALGFTETFVQDNHSSSTRPGTIRGLHCQL 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRCI G I+D AVDIR SP++G + E+SA NG Q++IP GF HGF T E
Sbjct: 65 APFAQGKLVRCIRGAIWDAAVDIRHGSPSFGRHAAAELSAANGRQLWIPPGFLHGFCTTE 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+TEV+YKVT Y + GV W D + + WP+ +S+KD LP L + + F
Sbjct: 125 PDTEVVYKVTAPYDKASERGVIWNDPDLALPWPVPAG-TALLSDKDNLLPRLAEAEPWFR 183
>gi|71906878|ref|YP_284465.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dechloromonas aromatica RCB]
gi|71846499|gb|AAZ45995.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dechloromonas aromatica RCB]
Length = 177
Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats.
Identities = 76/168 (45%), Positives = 105/168 (62%), Gaps = 4/168 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ R F D RG+F ++++ KL +G FVQDNHS S +RGLH+Q P
Sbjct: 8 IPDVLIIEPRVFGDDRGFFYESFNQKLFNDAVGCDVTFVQDNHSKSAK-NVLRGLHYQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLVR + G +FD+AVDIR++SPTYG WV + +SA N QI+IP G AHGF+TL
Sbjct: 67 PKEQGKLVRVVQGEVFDVAVDIRKDSPTYGRWVGVTLSAENKKQIWIPQGLAHGFLTLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
E +YK T++Y+ E + + W D ++I WP+ L +S KD
Sbjct: 127 TAEFLYKTTEYYAPEAERCIRWNDSKLNIKWPIEGGAL--LSVKDSMA 172
>gi|327482466|gb|AEA85776.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas stutzeri DSM
4166]
Length = 181
Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats.
Identities = 77/177 (43%), Positives = 108/177 (61%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I V +L R F D RG+F ++++ + + +G FVQDNHS S +RGLH+Q
Sbjct: 6 LDIPEVLLLVPRVFGDERGFFFESFNQRTFEQAIGSPASFVQDNHSRSAR-NVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR + G ++D+AVDIRR+SPT+G WV +SA N Q++IP GFAHGF+ L
Sbjct: 65 IAQP-QGKLVRVVVGEVYDVAVDIRRSSPTFGKWVGAILSAENNHQLWIPQGFAHGFLVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ EH+ +AW D + I WPL PS+S KD L Q +
Sbjct: 124 SETAEFLYKTTDYYAPEHERCIAWNDPHLAIQWPLE--QAPSLSNKDSQGLPLAQAE 178
>gi|255321114|ref|ZP_05362280.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acinetobacter radioresistens
SK82]
gi|255301668|gb|EET80919.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acinetobacter radioresistens
SK82]
Length = 183
Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats.
Identities = 77/177 (43%), Positives = 106/177 (59%), Gaps = 6/177 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-----DVFVQDNHSFSFDCGTIRGL 56
I + IL F D RGWF ++++ + + Q FVQDNHS S +RGL
Sbjct: 7 KIEGLLILHPNVFGDDRGWFMESFNQQRFAQALEQLNLPVPTFVQDNHSLS-QKSVLRGL 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H+Q PYAQ KLVR + GR++D+AVDIR +S TYG WV +E+SA N +IP GFAHGF
Sbjct: 66 HYQNAPYAQGKLVRVVQGRVWDVAVDIRPDSKTYGEWVGVELSAENKTMFWIPEGFAHGF 125
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ LE NT+ +YK T++Y+ E + + W D ++ I WPL + VS+KDQ
Sbjct: 126 IALEDNTQFLYKTTNYYNKESEGTIIWNDPTLAINWPLDEVGEVLVSDKDQIADAFK 182
>gi|146309305|ref|YP_001189770.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas mendocina ymp]
gi|145577506|gb|ABP87038.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas mendocina ymp]
Length = 182
Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 110/176 (62%), Gaps = 4/176 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V IL+ + F D RG+F ++++++ E G+ FVQDNHS S G +RGLH+Q
Sbjct: 8 LPEVLILEPQVFGDERGFFYESFNARRFAEATGVNREFVQDNHSRSAR-GVLRGLHYQLQ 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVR AG ++D+AVD+RR+SP +G WV + +SA N Q+++P GFAHGF+ L
Sbjct: 67 -QAQGKLVRASAGEVYDVAVDVRRSSPNFGKWVGVHLSAENKRQLWVPEGFAHGFLVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E +YK TD+Y+ H+ + W D + I WPL D + P +S KDQ L ++
Sbjct: 126 YAEFLYKTTDYYAPAHERCIRWDDAHLAIDWPL-DGLTPQLSAKDQQGLSLQDAET 180
>gi|325131124|gb|EGC53845.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
OX99.30304]
gi|325137147|gb|EGC59742.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis M0579]
gi|325201266|gb|ADY96720.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
M01-240149]
gi|325207125|gb|ADZ02577.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
NZ-05/33]
Length = 179
Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats.
Identities = 72/175 (41%), Positives = 108/175 (61%), Gaps = 4/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D RG+F +T+ + ++ + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPKVFGDERGFFMETFRDEWFRQNVAERTFVQENHSKSTQ-GVLRGLHYQTEN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR ++G +FD+AVD+RR+SPT+G WV +SA+N Q+++P GFAHGF L
Sbjct: 67 -TQGKLVRVVSGEVFDVAVDMRRDSPTFGHWVGEVLSADNKRQLWVPEGFAHGFYVLSDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E +YK TD+Y+ + + W D ++ I WPLL PS+S KD L + +
Sbjct: 126 AEFVYKCTDYYNPNAEHSLIWNDATVGIDWPLLGE--PSLSAKDLAGKMLAEAAT 178
>gi|218438466|ref|YP_002376795.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 7424]
gi|218171194|gb|ACK69927.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 7424]
Length = 180
Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 106/176 (60%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I++ + F D RG+F ++++ K+ K+ + FVQDNHS S +RGLH+Q
Sbjct: 7 EIPDVLIIEPKVFGDDRGFFYESFTEKVFKDKTEVDTHFVQDNHSRSLK-NVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G +FD+AVDIR NSPT+G WV +SA N Q+++P GFAHGF+ L
Sbjct: 66 KQP-QGKLVRVVLGEVFDVAVDIRSNSPTFGQWVGCRLSAENKRQLWVPEGFAHGFLVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ E++ + W D I I WP+ D P +S KDQ + D
Sbjct: 125 EAAEFLYKTTDYYAPEYERTIIWNDPDIGIDWPIEDE--PILSNKDQAGKLFKEAD 178
>gi|291615365|ref|YP_003525522.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sideroxydans lithotrophicus
ES-1]
gi|291585477|gb|ADE13135.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sideroxydans lithotrophicus
ES-1]
Length = 182
Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 108/176 (61%), Gaps = 4/176 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ + F D RG+F ++++ + EL G+ D FVQDNHS S +RGLH+Q
Sbjct: 8 IPDLFIVEPKVFGDDRGFFYESFNQRRFTELTGVTDPFVQDNHSKSAR-NVLRGLHYQIR 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR IAG + DIAVDIRR+S T+G WV + +SA N +++P GFAHGF+ L
Sbjct: 67 QP-QGKLVRVIAGEVLDIAVDIRRSSATFGQWVGVNLSAENKKMLWVPKGFAHGFVVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ E +YK TD+++ EH+ +AW D + I W L P +S KDQ L ++
Sbjct: 126 SAEFLYKTTDYWAPEHERCIAWNDPDLAIDWQLA-GATPLLSAKDQAGKLLRDAET 180
>gi|29726002|gb|AAO88932.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]
Length = 183
Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats.
Identities = 77/180 (42%), Positives = 110/180 (61%), Gaps = 7/180 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPTVFGDERGFFMETWNQKRFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SPT+G WV + +SA N Q++IP GF HGF
Sbjct: 66 TEN-TQGKLVRVVSGEVFDVAVDIRKDSPTFGKWVGVYLSAENKRQLWIPKGFLHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ E +YK TD+YS EH+ + W D ++I WP + +SEKD L ++ F
Sbjct: 125 SESAEFVYKCTDYYSPEHEVSIIWNDVDLNIKWP---SGRYILSEKDMMGIPLAKLIRDF 181
>gi|259503868|ref|ZP_05746770.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus antri DSM
16041]
gi|259168169|gb|EEW52664.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus antri DSM
16041]
Length = 191
Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats.
Identities = 75/180 (41%), Positives = 109/180 (60%), Gaps = 1/180 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ +I++T F D RG+F++TY+ + G+ F QDN S S + G +RG+H+Q
Sbjct: 9 SLPDAKIVETDVFGDHRGFFTETYTKNKFEAAGINVEFTQDNQSLSVEPGVLRGMHYQLA 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY+Q KL+R + G I+D+ VDIR+ SP YG W +S N Q+ +P GFAHGF+TL
Sbjct: 69 PYSQTKLLRAVTGAIYDVIVDIRKGSPAYGKWEGFILSEYNHRQLLVPKGFAHGFVTLTP 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N V YKV +Y+ E D G+A+ D +DI WP+ L +SEKDQ+ P + F Y
Sbjct: 129 NVNVAYKVDGYYAPEADRGIAFDDPDLDIKWPMPVDHL-ILSEKDQHHPAFKDAEINFTY 187
>gi|150376943|ref|YP_001313539.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium medicae WSM419]
gi|150031490|gb|ABR63606.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium medicae WSM419]
Length = 193
Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats.
Identities = 89/183 (48%), Positives = 119/183 (65%), Gaps = 1/183 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ ++ V + ++ D RG+FS+T+S+ ELGL FVQDNHS+S G +RGLH+Q
Sbjct: 8 LGLDEVLEILPQRIGDERGFFSETWSAVRFGELGLALTFVQDNHSYSAAKGVLRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+ Q KLVR + G +FD+AVDIRR SPT+ WV +EISA Q+ IP GFAHGF+TLE
Sbjct: 68 PPFMQNKLVRVVKGAVFDVAVDIRRGSPTFAKWVGVEISARKWNQLLIPKGFAHGFVTLE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+TEVIYKVT YS HD + + D I I WP+ T L +S+KD+ P L Q +
Sbjct: 128 ADTEVIYKVTSPYSPAHDRSIRFDDPDIAIAWPVPSTEL-QLSDKDRTAPLLRQAEVFGV 186
Query: 181 YDG 183
+G
Sbjct: 187 AEG 189
>gi|255068254|ref|ZP_05320109.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria sicca ATCC 29256]
gi|255047524|gb|EET42988.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria sicca ATCC 29256]
Length = 179
Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats.
Identities = 69/175 (39%), Positives = 104/175 (59%), Gaps = 4/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPEVKLLEPQVFGDARGFFMETFRDEWFKANVCDRTFVQENHSKSGK-GVLRGLHYQTEN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G W +SA N Q+++P GFAHGF L
Sbjct: 67 -TQGKLVRVVVGEVFDVAVDMRKDSPTFGKWAGEILSAENKRQLWVPEGFAHGFYVLSDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E +YK TD+Y+ + + + W D ++ I WPL P++S KD L + +
Sbjct: 126 AEFVYKCTDYYNPKAEHSLIWNDPTVGIEWPLQGE--PNLSPKDLAGKILAEAAT 178
>gi|315225494|ref|ZP_07867307.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga ochracea
F0287]
gi|314944592|gb|EFS96628.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga ochracea
F0287]
Length = 182
Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats.
Identities = 73/175 (41%), Positives = 105/175 (60%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ + F D RG+F +++S + EL VFVQDN S S G +RGLHFQ+P
Sbjct: 7 KIEGVVIIEPQVFFDGRGYFFESFSQQRFNELVSPTVFVQDNESQS-TYGVLRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQAKLVR + G + D+AVD+R SP++G + S+ ++ N Q +IP GFAHGF L
Sbjct: 66 PFAQAKLVRVVKGEVLDVAVDLREGSPSFGQYESVILNEENKRQFFIPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YK ++Y+ E + V W D +I I W L ++ +SEKD+ P L +
Sbjct: 126 EAIFQYKCDNYYAPESEGSVRWDDPTIGIDWRLPAEVI-QLSEKDKKAPLLVEAK 179
>gi|284799482|ref|ZP_05984100.2| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria subflava NJ9703]
gi|284797991|gb|EFC53338.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria subflava NJ9703]
Length = 184
Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats.
Identities = 70/173 (40%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCDRTFVQENHSKSSK-GVLRGLHYQTEN 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 72 -TQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ + + + W D ++ I WPL P++S KD L +
Sbjct: 131 AEFVYKCTDYYNPKAEHSLIWNDPTVGIDWPLQGE--PNLSPKDLAGKVLTEA 181
>gi|312868786|ref|ZP_07728977.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus oris
PB013-T2-3]
gi|311095685|gb|EFQ53938.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus oris
PB013-T2-3]
Length = 191
Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats.
Identities = 76/180 (42%), Positives = 110/180 (61%), Gaps = 1/180 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ +I++T F D RG+F++TY+ +E G+ F QDN S S + G +RG+H+Q
Sbjct: 9 SLPDAKIVETDVFGDHRGFFTETYTKNKFEEAGVNVEFTQDNQSLSVEPGVLRGMHYQLA 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY+Q KL+R + G I+D+ VDIR+ SP YG W +S N Q+ +P GFAHGF+TL
Sbjct: 69 PYSQTKLLRAVTGAIYDVIVDIRKGSPAYGKWEGFILSEYNHRQLLVPKGFAHGFVTLTP 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N V YKV +Y+ E D G+A+ D +DI WP+ L +SEKDQ+ P + F Y
Sbjct: 129 NVNVAYKVDGYYAPEADRGIAFDDPDLDIKWPMPVDHL-ILSEKDQHHPAFKDAEINFTY 187
>gi|303244741|ref|ZP_07331071.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanothermococcus
okinawensis IH1]
gi|302484875|gb|EFL47809.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanothermococcus
okinawensis IH1]
Length = 185
Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats.
Identities = 82/175 (46%), Positives = 115/175 (65%), Gaps = 4/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V ++K + F D RG+F +TY + +++G+ F+QDNHS S G +RGLHFQ+
Sbjct: 9 KIPEVILIKPKVFGDERGFFLETYKKEDFEKVGINGEFIQDNHSKSC-YGVLRGLHFQKE 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQAK+VRCI G I+D+AVD+RR+SPT+G WV +S N Q+YIP GFAHGF L
Sbjct: 68 PYAQAKIVRCIRGVIYDVAVDLRRSSPTFGQWVGAVLSEYNKHQLYIPRGFAHGFCVLSG 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EV+YKV + Y+ E++ GV W D I I W + + P +S+KD+ L ++D
Sbjct: 128 EAEVVYKVDNKYAPEYECGVIWNDGDIGIDWLIDE---PILSDKDKQWHTLKELD 179
>gi|293602507|ref|ZP_06684953.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Achromobacter piechaudii ATCC
43553]
gi|292819269|gb|EFF78304.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Achromobacter piechaudii ATCC
43553]
Length = 182
Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats.
Identities = 76/175 (43%), Positives = 108/175 (61%), Gaps = 4/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V + + R F D RG+F ++++ K +E G++ FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVLVFEPRVFGDERGFFFESFNRKAFEEATGMRRDFVQDNHSRSSK-GVLRGLHYQIQ 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR G +FD+AVDIR++SPTYG WV +SA N Q+++P GFAHGF+ +
Sbjct: 67 -QTQGKLVRVSEGAVFDVAVDIRKSSPTYGQWVGTVLSAENKRQMWVPEGFAHGFLVISE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ + + ++W D SI I WPL P +SEKD L + +
Sbjct: 126 YAEFLYKTTDYYAPQSERCISWDDPSIGIDWPLGSDA-PVMSEKDLRGRRLLEAE 179
>gi|306820759|ref|ZP_07454385.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551208|gb|EFM39173.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 185
Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats.
Identities = 73/177 (41%), Positives = 101/177 (57%), Gaps = 2/177 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + +++ F D+RG+F +TY+ K G+ FVQDN S S G +RGLHFQ
Sbjct: 11 IKGMYVIEPEIFGDNRGYFMETYNENDFKNAGIDVEFVQDNES-SSKKGVLRGLHFQTKN 69
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR ++G +FD+ VD+R+NSPTYG W +S N Q+YIP GFAHGF+ L
Sbjct: 70 V-QGKLVRVLSGEVFDVGVDLRKNSPTYGKWYGEILSCENKKQLYIPEGFAHGFVVLSDM 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
YK T+FY + G+AW D I I W + D + +S+KD+ L + F
Sbjct: 129 ATFAYKCTNFYDPSSEGGIAWNDPDIAIDWHISDDMEIILSDKDKVRKTLKEQKIEF 185
>gi|157376144|ref|YP_001474744.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sediminis HAW-EB3]
gi|157318518|gb|ABV37616.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sediminis HAW-EB3]
Length = 181
Score = 261 bits (668), Expect = 3e-68, Method: Composition-based stats.
Identities = 72/171 (42%), Positives = 106/171 (61%), Gaps = 2/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+I++ + F D RG+F +T+ + L KE FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKIIEPQVFGDERGFFMETFRTSLFKEKCGDIEFVQENHSKSNH-GILRGLHYQTE- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR G +FD+AVD+R++SPTYG WV +SA N Q+++P GFAHGF + +
Sbjct: 66 QTQGKLVRVTKGEVFDVAVDLRKDSPTYGQWVGEILSAENKRQLWVPAGFAHGFYVMSED 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
E +YK TD+Y+ + + W D ++++ WP +D P +SEKD+N
Sbjct: 126 AEFMYKCTDYYNPSAEVSIKWDDPTLNVQWPWVDKQAPLLSEKDKNGLSFE 176
>gi|237802169|ref|ZP_04590630.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331025026|gb|EGI05082.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 181
Score = 261 bits (668), Expect = 3e-68, Method: Composition-based stats.
Identities = 78/176 (44%), Positives = 110/176 (62%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V IL+ R F D RG+F ++++++ +E GL FVQDNHS S G +RGLH+Q
Sbjct: 7 KLPEVVILEPRVFGDERGFFYESFNAQAFQEATGLTRHFVQDNHSRS-QQGVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQ KLVR AG++ D+AVDIRR+SP +G WV++E+SA N Q+++P GFAHGF+ L
Sbjct: 66 EN-AQGKLVRVTAGKVLDVAVDIRRSSPNFGQWVAVELSAENACQLWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ + +AW D + I W PS+S KDQ L + D
Sbjct: 125 EQAEFLYKTTDYYTPSAERCIAWNDPDLAIDWQFDGQ--PSLSAKDQQGKSLKEAD 178
>gi|15676014|ref|NP_273144.1| dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase [Neisseria meningitidis
MC58]
gi|7225299|gb|AAF40545.1| dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase [Neisseria meningitidis
MC58]
gi|316985927|gb|EFV64866.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
H44/76]
Length = 184
Score = 261 bits (668), Expect = 3e-68, Method: Composition-based stats.
Identities = 70/173 (40%), Positives = 106/173 (61%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLHYQTEN 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 72 -TQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ + + + W D ++ I WPL P++S KD L++
Sbjct: 131 AEFVYKCTDYYNPKAEHSLIWNDPTVGIDWPLQGE--PNLSPKDLAGKVLSEA 181
>gi|209967309|ref|YP_002300224.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Rhodospirillum
centenum SW]
gi|209960775|gb|ACJ01412.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Rhodospirillum
centenum SW]
Length = 191
Score = 261 bits (668), Expect = 3e-68, Method: Composition-based stats.
Identities = 87/181 (48%), Positives = 116/181 (64%), Gaps = 1/181 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V ++ R+F D RG+F + Y + + G+ F+QDN S S T+RGLHFQRPP
Sbjct: 8 IAGVLLITPRRFFDDRGYFVELYQEERYRAAGVDARFMQDNRSLSRPVYTVRGLHFQRPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQAKLV+ + G I D+AVDIR SPT+G V++ +SA G Q+Y+P GFAHGF TLE +
Sbjct: 68 FAQAKLVQVLRGSIVDVAVDIRHGSPTFGRHVAVTLSAEAGNQLYVPAGFAHGFCTLEPD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
TEV YKV+ YS EHD G+ W D ++ I WP VS+KD+ LP L + F Y+
Sbjct: 128 TEVHYKVSAPYSREHDGGIHWADPALGIDWP-AGPDRAVVSDKDRVLPRLADLGPLFHYE 186
Query: 183 G 183
G
Sbjct: 187 G 187
>gi|119485672|ref|ZP_01619947.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lyngbya sp. PCC 8106]
gi|119456997|gb|EAW38124.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lyngbya sp. PCC 8106]
Length = 182
Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats.
Identities = 79/176 (44%), Positives = 109/176 (61%), Gaps = 4/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V IL+ + F D RG+F ++++ K + G+ FVQDNHS S G +RGLH+Q
Sbjct: 7 KIPEVLILEPKVFGDERGFFFESFNQKSFADQTGVTTEFVQDNHSRSRQ-GVLRGLHYQT 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KL+R +AG IFD+AVDIR++SPT+G WV ISA N Q ++P FAHGF+ L
Sbjct: 66 E-QVQGKLLRVVAGEIFDVAVDIRKSSPTFGQWVGCIISAENKRQFWVPPKFAHGFLVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EV+YK TD+Y+ +H+ + W D + I WP+ D I P +S KDQ+ L D
Sbjct: 125 EVAEVLYKTTDYYAPQHERSILWNDPDLGIEWPV-DGITPVLSAKDQDGKTLKTAD 179
>gi|150019564|ref|YP_001311818.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium beijerinckii
NCIMB 8052]
gi|149906029|gb|ABR36862.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium beijerinckii
NCIMB 8052]
Length = 183
Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats.
Identities = 77/181 (42%), Positives = 110/181 (60%), Gaps = 5/181 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I++ + F D RGWF +TYS E + F QDN S+S G +RG+HFQ
Sbjct: 7 KLEGVYIVEPQVFGDERGWFMETYSRIKTPE--IACDFCQDNQSYSKGKGILRGIHFQNG 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQAKLVRC+ G + D+AVD+R+ SPTY WV++E+SA N Q++IP GF HGF+TL
Sbjct: 65 ENAQAKLVRCVKGAVLDVAVDLRKGSPTYKEWVAVELSAENKKQLFIPRGFGHGFLTLTD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ E +YK ++Y+ E D + + D I + W + + P +SEKD+ P L D F Y
Sbjct: 125 DVEFVYKTDNYYNYESDRSIKFDDPEIGVEWGIEN---PILSEKDKKAPLLKDSDCTFIY 181
Query: 182 D 182
+
Sbjct: 182 N 182
>gi|331018758|gb|EGH98814.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 181
Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats.
Identities = 76/176 (43%), Positives = 107/176 (60%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V IL+ + F D RG+F ++++++ +E GL FVQDNHS S G +RGLH+Q
Sbjct: 7 QLPEVLILEPKVFGDERGFFYESFNARAFQEATGLTRQFVQDNHSRS-QRGVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQ KLVR G++ D+AVDIRR SP +G WV +E+SA N Q+++P GFAHGF+ L
Sbjct: 66 EN-AQGKLVRVTVGKVLDVAVDIRRTSPNFGRWVGVELSAENARQLWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+Y+ + +AW D + I W PS+S KDQ L D
Sbjct: 125 EHAEFLYKTTDYYTPSAERCIAWNDPDLAIDWQFNGE--PSLSVKDQQGKSLKDAD 178
>gi|237711069|ref|ZP_04541550.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 9_1_42FAA]
gi|229454913|gb|EEO60634.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 9_1_42FAA]
Length = 189
Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats.
Identities = 77/180 (42%), Positives = 113/180 (62%), Gaps = 2/180 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F+D RG+F +++S + +E + FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IEDVVIIEPRLFKDERGYFFESFSQREFEEKIRKISFVQDNESKSS-YGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLVR I G + D+AVDIR+ SPT+G V++E++ N LQ++IP GFAHGF L
Sbjct: 67 YAQSKLVRVIKGAVLDVAVDIRKGSPTFGKHVAIELTEENHLQLFIPRGFAHGFSVLSQE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK +FY+ + + +AW D ++I W + T +SEKD++ L F+Y+
Sbjct: 127 VIFQYKCDNFYAPQSEGALAWDDSDLNINWRIP-TNQIILSEKDKHHEKLKDASWLFDYN 185
>gi|298290100|ref|YP_003692039.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Starkeya novella DSM 506]
gi|296926611|gb|ADH87420.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Starkeya novella DSM 506]
Length = 193
Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats.
Identities = 85/181 (46%), Positives = 113/181 (62%), Gaps = 1/181 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +++ + D RG+F +TY G+ FVQDN S S G +RGLHFQ
Sbjct: 7 LAIPDVVLVQPVRHGDGRGYFCETYKKPAFDAFGIDLAFVQDNESLSRPVGVVRGLHFQT 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP AQAKLVR + G IFD+AVDIRR SP+YG WV+ ++A G Q+++P GFAHGF TLE
Sbjct: 67 PPMAQAKLVRVLRGAIFDVAVDIRRGSPSYGKWVAATLTAEEGNQLFMPHGFAHGFCTLE 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T + YKV YS +D+G+AW D + I WP+ T +S+KD+ P L SPF
Sbjct: 127 PDTLIAYKVDAPYSRPNDAGIAWDDPDLAIDWPVT-TETAVLSDKDRVQPRLRDYASPFA 185
Query: 181 Y 181
Y
Sbjct: 186 Y 186
>gi|260890572|ref|ZP_05901835.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptotrichia hofstadii F0254]
gi|260859814|gb|EEX74314.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptotrichia hofstadii F0254]
Length = 190
Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats.
Identities = 81/182 (44%), Positives = 118/182 (64%), Gaps = 6/182 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ + F D RG+F +TY+ K +ELGL FVQDNHS S G +RGLHFQ
Sbjct: 11 IKDLVIIEPKVFGDERGFFMETYNQKSFEELGLTMNFVQDNHSKS-KKGVLRGLHFQTK- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR I G ++D+AVD+R+ S T+G W ++++SA N L Y+P GFAHGF+TLE
Sbjct: 69 HTQGKLVRVIKGSVYDVAVDLRKGSETFGKWYAVKLSAENKLMFYVPEGFAHGFLTLEDE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQIDSP 178
TE +Y+ TD Y+ E+DSG+ W DK+++I W + ++SEKD+ ++ +
Sbjct: 129 TEFVYRCTDLYAPEYDSGLLWSDKTLNIDWKFEEFEINPNELTISEKDKVQQKFDKNKNY 188
Query: 179 FE 180
FE
Sbjct: 189 FE 190
>gi|163803299|ref|ZP_02197178.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio sp. AND4]
gi|159172936|gb|EDP57774.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio sp. AND4]
Length = 182
Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats.
Identities = 72/175 (41%), Positives = 109/175 (62%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 8 VPDVKIIEPTVFGDERGFFMETWNQKQFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQT 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR ++G +FD+AVDIR+ SPT+G WV +S N Q+++P GFAHGF
Sbjct: 67 EN-TQGKLVRVVSGEVFDVAVDIRKGSPTFGQWVGEYLSGENKRQLWVPEGFAHGFYVTS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ + + W D++++I WP+ +T P +S KD+ F +++
Sbjct: 126 DEAEFVYKCTDYYNPSAEVSIQWDDEALNIDWPIAET-TPLLSGKDKGGIFFSKV 179
>gi|84386939|ref|ZP_00989963.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Vibrio splendidus
12B01]
gi|84378229|gb|EAP95088.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Vibrio splendidus
12B01]
Length = 178
Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats.
Identities = 74/175 (42%), Positives = 106/175 (60%), Gaps = 6/175 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ F D RG F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVKIIEPSVFGDERGLFMETWNQKQFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQT 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR ++G +FD+AVDIR+ SPT+G W+ +SA N Q+++P GFAHGF
Sbjct: 67 EN-TQGKLVRVVSGEVFDVAVDIRKGSPTFGQWIGEYLSAENKRQLWVPEGFAHGFYVTS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ + + +AW D ++ I WPL P +S+KD+ Q+
Sbjct: 126 DEAEFVYKCTDYYNPQAEISIAWDDDTLRIDWPLTSP--PRLSDKDRQGLLFEQL 178
>gi|325279646|ref|YP_004252188.1| Sigma 54 interacting domain-containing protein [Odoribacter
splanchnicus DSM 20712]
gi|324311455|gb|ADY32008.1| Sigma 54 interacting domain protein [Odoribacter splanchnicus DSM
20712]
Length = 183
Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats.
Identities = 70/182 (38%), Positives = 110/182 (60%), Gaps = 5/182 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I+ V IL+ R F D RG+F +++S + E + FVQDN S S G +RGLH+Q P
Sbjct: 7 SISDVVILEPRVFGDERGYFFESFSQREFNEQVAEVTFVQDNESKSS-YGVVRGLHYQLP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY QAKLVR + G + D+ VD+R+NS T+G V++ +S N Q +IP GFAHGF L
Sbjct: 66 PYTQAKLVRVVEGEVLDVVVDLRKNSATFGKHVAVVLSGENKRQFFIPKGFAHGFAVLSP 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK ++Y+ +++SG+ + D ++ I W + + + +S KD+ L++ F +
Sbjct: 126 QAVFQYKCDNYYAPQYESGIQFDDPALGIDWKIPEAEM-ILSAKDRKHKGLSEA---FVF 181
Query: 182 DG 183
+G
Sbjct: 182 EG 183
>gi|121607688|ref|YP_995495.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Verminephrobacter eiseniae
EF01-2]
gi|121552328|gb|ABM56477.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Verminephrobacter eiseniae
EF01-2]
Length = 182
Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats.
Identities = 67/177 (37%), Positives = 109/177 (61%), Gaps = 4/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ + D+RG+F ++++ + ++ G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPEVVLIEPQVHGDARGFFYESFNQRAFEQATGCAGRFVQDNHSRSAQ-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR + G + D+ VD+R++SP++G WV+ E+SA+N Q+++P GFAHGF+ L
Sbjct: 65 IRQP-QGKLVRVVRGAVLDVVVDLRKSSPSFGQWVAEELSADNHRQLWVPPGFAHGFLVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+Y+ H+ +AW D ++ I W L P +S +D P L +
Sbjct: 124 SDSAECLYKTTDYYAPAHERCIAWDDPALAIDWRLR-GNRPLLSPRDAQAPPLAHAE 179
>gi|261868367|ref|YP_003256289.1| hypothetical protein D11S_1707 [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261413699|gb|ACX83070.1| hypothetical protein D11S_1707 [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 180
Score = 261 bits (667), Expect = 4e-68, Method: Composition-based stats.
Identities = 72/174 (41%), Positives = 103/174 (59%), Gaps = 4/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++L+ + F D RG+F +T+ + +E FVQ+NHS S G +RGLH+Q
Sbjct: 7 KIPDVKLLELQVFGDERGFFMETFRDEWFRENVADHTFVQENHSKSIK-GVLRGLHYQTE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR ++G +FD+AVD+R+NSPT G WV +SA N Q+++P GFAHGF L
Sbjct: 66 N-TQGKLVRVVSGAVFDVAVDMRKNSPTLGQWVGEILSAENKRQLWVPEGFAHGFYVLTD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YK TD+Y+ + + + W D+++ I WPL PS+S KD L
Sbjct: 125 EAEFTYKCTDYYNPKAEHSLIWNDETVGIEWPLEGE--PSLSAKDLAGKVLKDA 176
>gi|228473995|ref|ZP_04058736.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga gingivalis
ATCC 33624]
gi|228274509|gb|EEK13350.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga gingivalis
ATCC 33624]
Length = 188
Score = 261 bits (667), Expect = 4e-68, Method: Composition-based stats.
Identities = 76/180 (42%), Positives = 109/180 (60%), Gaps = 3/180 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ + F D RG+F +++S + E FVQDN S S G +RGLHFQRPP
Sbjct: 8 IEGLVIIEPKVFSDERGYFFESFSQQKFVEEVCNTTFVQDNESKSS-YGVLRGLHFQRPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLVR + G ++D+AVDIRR SPT+G ++ +E++ N Q +IP GFAHGF+ L
Sbjct: 67 YAQSKLVRVVKGIVWDVAVDIRRGSPTFGQYIGVELTEQNKRQFFIPRGFAHGFVVLSPE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK FY+ H+ V W D +I I W + + +S+KDQ P L ++ F+Y
Sbjct: 127 AIFQYKCDSFYAPTHEGSVLWNDPTIGIDWKIPHNDI-ILSQKDQQGPLLQEV-WEFDYK 184
>gi|222109772|ref|YP_002552036.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Acidovorax ebreus TPSY]
gi|221729216|gb|ACM32036.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidovorax ebreus TPSY]
Length = 181
Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats.
Identities = 74/177 (41%), Positives = 115/177 (64%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ + F D+RG+F ++++ K E G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPEVVLIEPQVFGDARGFFFESFNQKTFNEATGTNHQFVQDNHSRSSQ-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR G+++D+AVDIR++SPT+G WV E+S +N Q+++P GFAHGF+ L
Sbjct: 65 IQQP-QGKLVRVARGKVWDVAVDIRKSSPTFGQWVGAELSEDNQHQLWVPPGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + +YK TD+Y+ EH+ +AW D+++ I+WP+ +I P +S KDQ L +
Sbjct: 124 SESADFLYKTTDYYAPEHERCIAWNDEALTISWPV--SITPILSAKDQLGAALCDAE 178
>gi|330900904|gb|EGH32323.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
japonica str. M301072PT]
gi|330939472|gb|EGH42817.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv. pisi
str. 1704B]
gi|330980590|gb|EGH78693.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 181
Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 108/176 (61%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V IL+ + F D RG+F +++++K + GL FVQDNHS S G +RGLH+Q
Sbjct: 7 KLPEVLILEPKVFGDERGFFYESFNAKAFQAATGLTREFVQDNHSRS-QRGVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQ KLVR G++ D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L
Sbjct: 66 EN-AQGKLVRVTVGKVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+Y+ + +AW D + I W P++S KDQ L + D
Sbjct: 125 EHAEFLYKTTDYYTPSAERCIAWDDADLAIDWQFDGQ--PNLSAKDQQGKRLKEAD 178
>gi|325276928|ref|ZP_08142615.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas sp. TJI-51]
gi|324097943|gb|EGB96102.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas sp. TJI-51]
Length = 182
Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats.
Identities = 83/178 (46%), Positives = 113/178 (63%), Gaps = 6/178 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I V + + F D RG+F ++Y++++ E+ GLQ FVQDNHS S G +RGLH+Q
Sbjct: 6 LDIPEVVLFTPKVFGDDRGFFYESYNARVFTEVTGLQPDFVQDNHSRSVK-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P+AQ KLVR I G +FD+AVDIRR+SPT+G WV +SA N Q++IP GFAHGF+TL
Sbjct: 65 LAPHAQGKLVRVIQGEVFDVAVDIRRSSPTFGKWVGAVLSAENKQQLWIPAGFAHGFVTL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN--LPFLNQI 175
E +YK TDFYS + + +AW D I I W P +S KDQ L ++
Sbjct: 125 SETAEFVYKTTDFYSAKSERCIAWDDPQIAIDWRFDGQ--PQLSGKDQQGVALSLAEV 180
>gi|301311243|ref|ZP_07217171.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 20_3]
gi|300830817|gb|EFK61459.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 20_3]
Length = 193
Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats.
Identities = 79/180 (43%), Positives = 115/180 (63%), Gaps = 2/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V I++ + F+D+RG+F +++S + +E + FVQDN S S G +RGLHFQRP
Sbjct: 7 DIEGVVIIEPKVFDDARGYFFESFSQREFEEKVRKINFVQDNESMSS-YGVMRGLHFQRP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ Q+KLVRC+ G + D+AVDIR+ SPTYG V++E+S +N Q ++P GFAHGF L
Sbjct: 66 PFTQSKLVRCVKGCVLDVAVDIRKGSPTYGKHVAVELSEDNHRQFFVPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +FY+ + D G+ +D+S+ I W + +SEKD P L DSPF+Y
Sbjct: 126 IAVFQYKCDNFYAPQADGGICIKDESLGIDWRIP-MDKALLSEKDIKHPCLEDFDSPFDY 184
>gi|168481242|gb|ACA24737.1| RmlC [Escherichia coli]
Length = 178
Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats.
Identities = 82/172 (47%), Positives = 113/172 (65%), Gaps = 5/172 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKSSK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++S T+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSSTFGKWVGVNLSAENKRQLWIPEGFAHGFITLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD-QNLPF 171
E IYK T FY+ + +AW D ++I W + LP VS+KD + LPF
Sbjct: 126 NIAEFIYKTTQFYNPSFERVIAWDDPVLNINWNIK--QLPIVSKKDMKGLPF 175
>gi|326336356|ref|ZP_08202527.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga sp. oral taxon
338 str. F0234]
gi|325691530|gb|EGD33498.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga sp. oral taxon
338 str. F0234]
Length = 188
Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats.
Identities = 76/180 (42%), Positives = 110/180 (61%), Gaps = 3/180 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ + F D RG+F +++S K E FVQDN S S G +RGLHFQR P
Sbjct: 8 IEGVVIIEPKVFPDERGYFFESFSQKKFVENICNTTFVQDNESKSS-YGVLRGLHFQRAP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q+KLVR + G ++DIAVDIR+ SPT+G ++ +E++ N Q++IP GFAHGF+ L
Sbjct: 67 YTQSKLVRVVQGVVWDIAVDIRKGSPTFGKYIGVELTEENKRQLFIPRGFAHGFVVLSPE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK FY+ H+ GV W D I I W + + +S+KD++ P L+++ F+Y
Sbjct: 127 AIFQYKCDAFYAPTHEGGVLWNDPEIGIDWRIPPQDI-ILSQKDEHNPLLHEV-WEFDYK 184
>gi|325129127|gb|EGC51975.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis N1568]
Length = 179
Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLHYQTEN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 67 -TQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y E + + W D +I I WPL P++S KD L +
Sbjct: 126 AEFVYKCTDYYKPEAEQVLIWNDPAIGIDWPL--QTEPNLSPKDLAGKVLAEA 176
>gi|325129165|gb|EGC52012.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis N1568]
Length = 185
Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats.
Identities = 72/174 (41%), Positives = 104/174 (59%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLHYQTEN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 67 -TQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y E + + W D +I I WPL P++S KD Q +
Sbjct: 126 AEFVYKCTDYYKPEAEQVLIWNDPAIGIDWPL--QTEPNLSPKDLAGKAWAQAE 177
>gi|229825468|ref|ZP_04451537.1| hypothetical protein GCWU000182_00828 [Abiotrophia defectiva ATCC
49176]
gi|229790031|gb|EEP26145.1| hypothetical protein GCWU000182_00828 [Abiotrophia defectiva ATCC
49176]
Length = 193
Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 116/176 (65%), Gaps = 2/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + +++ + F D+RGWF +++S K +E+G+ FVQDNHSFS GT+RGLHFQ+
Sbjct: 12 GIGGLFVIEPKVFGDNRGWFMESWSKKKFEEVGINCEFVQDNHSFSEKKGTLRGLHFQKG 71
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR + GR++D+AVD+R++SPT+ W +E+S N ++++P GFAHGF+TL
Sbjct: 72 EYSQAKLVRVLRGRVYDVAVDLRKDSPTFLNWFGVELSEENKKELFVPRGFAHGFLTLTD 131
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD--TILPSVSEKDQNLPFLNQI 175
N E YK ++Y+ E + + + D+ I + W L D VS+KD+ P ++
Sbjct: 132 NVEFAYKADNYYNKESEGAIRFDDEKIGVDWKLADLGVGEVIVSDKDKTAPGFEEL 187
>gi|91976051|ref|YP_568710.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
BisB5]
gi|91682507|gb|ABE38809.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
BisB5]
Length = 185
Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats.
Identities = 92/178 (51%), Positives = 118/178 (66%), Gaps = 1/178 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+++ + F D+RG F +TY+ K E G+ FVQDN SFS + GTIRGLHFQ PP
Sbjct: 9 IEAVKVIVPKSFADTRGTFCETYNHKRFVEHGISFEFVQDNQSFSAEAGTIRGLHFQSPP 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLVR + GRI D+AVD+RR+SPT+G WV+ E+SA NG Q+ +P GFAHGF TLE +
Sbjct: 69 AAQDKLVRVLRGRILDVAVDLRRSSPTFGKWVAEELSAENGKQLLVPVGFAHGFCTLEPD 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
T V+YKVT +YS HD GVAW D + I WP+ +S+KD P + FE
Sbjct: 129 THVLYKVTSYYSPAHDLGVAWDDPDLAIDWPIRSD-EAVLSDKDLRQPSFRSLAPVFE 185
>gi|308048796|ref|YP_003912362.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ferrimonas balearica DSM
9799]
gi|307630986|gb|ADN75288.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ferrimonas balearica DSM
9799]
Length = 181
Score = 260 bits (666), Expect = 6e-68, Method: Composition-based stats.
Identities = 68/173 (39%), Positives = 102/173 (58%), Gaps = 2/173 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ + F D RG+F +T+ ++ + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IADVVIIEPKVFGDDRGFFMETFRTEEFNKHCAVREFVQENHSKSAK-GVLRGLHYQTEN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR ++G +FD+AVD+R +SPT+G WV +E+SA N Q+++P GFAHGF +
Sbjct: 67 -TQGKLVRVVSGAVFDVAVDMRESSPTFGQWVGVELSAENKRQLWVPEGFAHGFYVMTDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD Y+ + + W D +++I WP+ PS+S KD
Sbjct: 126 AEFVYKCTDVYNPNAEVSLRWDDPALNIEWPITVEQQPSLSGKDTEGLLFKDA 178
>gi|37523271|ref|NP_926648.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gloeobacter violaceus PCC
7421]
gi|35214275|dbj|BAC91643.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gloeobacter violaceus PCC
7421]
Length = 186
Score = 260 bits (666), Expect = 6e-68, Method: Composition-based stats.
Identities = 80/174 (45%), Positives = 107/174 (61%), Gaps = 5/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V +++ + F D+RG+F ++Y ELG+ D FVQDN S S G +RGLH+Q
Sbjct: 8 LPGVYVIEPKVFGDARGYFYESYHRAKFAELGIPDEFVQDNCSRSAR-GVLRGLHYQLR- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ QAKL R + G +FD+AVDIR+ SPT+G W + +SA N QIY+P GFAHGF L +
Sbjct: 66 FPQAKLCRVVEGEVFDVAVDIRKGSPTFGQWAGVVLSAENRHQIYVPAGFAHGFAVLSES 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK +DFY E + GV W D I I WP+ P +S KDQ LNQ D
Sbjct: 126 AEFLYKCSDFYHPEDEQGVLWNDPDIGIPWPVE---APVLSGKDQKYLPLNQTD 176
>gi|240948933|ref|ZP_04753289.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus minor NM305]
gi|240296748|gb|EER47359.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus minor NM305]
Length = 180
Score = 260 bits (666), Expect = 6e-68, Method: Composition-based stats.
Identities = 70/173 (40%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++L+ + F D RG+F +T+ + K+ FVQ+NHS S G +RGLH+Q
Sbjct: 7 KIPDVKLLEPQVFGDERGFFMETFRDEWFKQNVADRTFVQENHSKSIK-GVLRGLHYQTE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 N-TQGKLVRVVQGAVFDVAVDLRKSSPTFGQWVGEILSAENKRQLWVPEGFAHGFYVLTE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E YK TD+Y+ + + + W D ++ I WPL P +S KD L++
Sbjct: 125 TAEFTYKCTDYYNPKAEHSLIWNDPTVGIEWPLDGE--PGLSVKDIAGKILSE 175
>gi|60682913|ref|YP_213057.1| putative LPS biosynthesis related dTDP-4-dehydrorhamnose
3,5-epimerase [Bacteroides fragilis NCTC 9343]
gi|253566043|ref|ZP_04843497.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_2_5]
gi|265766787|ref|ZP_06094616.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_16]
gi|60494347|emb|CAH09143.1| putative LPS biosynthesis related dTDP-4-dehydrorhamnose
3,5-epimerase [Bacteroides fragilis NCTC 9343]
gi|251945147|gb|EES85585.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_2_5]
gi|263253164|gb|EEZ24640.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_16]
gi|301164376|emb|CBW23934.1| putative LPS biosynthesis related dTDP-4-dehydrorhamnose
3,5-epimerase [Bacteroides fragilis 638R]
Length = 180
Score = 260 bits (666), Expect = 6e-68, Method: Composition-based stats.
Identities = 69/174 (39%), Positives = 105/174 (60%), Gaps = 2/174 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V IL+ R F+D RG+F ++++ + +E + FVQDN S S G +RGLHFQ+ P
Sbjct: 8 IDGVVILEPRIFKDDRGYFFESFNQREFEEKVCKTTFVQDNESKSS-YGVLRGLHFQQAP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ+KLVR + G + D+AVDIR+ SPT+G V++E++ +N Q +IP G AHGF L
Sbjct: 67 FAQSKLVRVVKGAVLDVAVDIRKGSPTFGQHVAVELTEDNHRQFFIPRGLAHGFSVLSEE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YK +FY+ + + W D + I W + + +SEKD P L ++
Sbjct: 127 VVFQYKCDNFYAPHSEGAITWDDPDLGIDWRIPADRV-ILSEKDSRHPRLKDLN 179
>gi|324114029|gb|EGC08002.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia fergusonii B253]
Length = 178
Score = 260 bits (666), Expect = 6e-68, Method: Composition-based stats.
Identities = 83/172 (48%), Positives = 114/172 (66%), Gaps = 5/172 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVEFVQDNHSKSSK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFITLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD-QNLPF 171
E IYK T FY+ + +AW D ++I W + LP VS+KD + LPF
Sbjct: 126 NIAEFIYKTTQFYNPSFERVIAWDDPVLNINWNIK--QLPFVSKKDMKGLPF 175
>gi|218674078|ref|ZP_03523747.1| dTDP-4-dehydrorhamnose 3,5-epimerase protein [Rhizobium etli GR56]
Length = 192
Score = 260 bits (666), Expect = 6e-68, Method: Composition-based stats.
Identities = 87/181 (48%), Positives = 117/181 (64%), Gaps = 1/181 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + + +F D RG+FS+ + +E FVQDN S S GT+RGLHFQ PP
Sbjct: 8 IEGIVAITPPRFGDHRGYFSEVFKDAWFRENVADVTFVQDNESLSAQAGTVRGLHFQIPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVRC+AGRI D+ VDIR SP++G W+S E+S + G Q++IP GFAHGF T+E N
Sbjct: 68 FAQGKLVRCLAGRIMDVVVDIRVGSPSFGKWLSQELSPDTGKQLWIPPGFAHGFATIEPN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
+ + YKVT YS +HD G+AW D +I I WP +T + S S+KD+ LP L + + F Y
Sbjct: 128 SVISYKVTAPYSPQHDRGIAWNDPAIGIRWPFDETDMVS-SDKDKTLPRLADLPNHFSYS 186
Query: 183 G 183
Sbjct: 187 A 187
>gi|332532393|ref|ZP_08408273.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudoalteromonas
haloplanktis ANT/505]
gi|332038260|gb|EGI74706.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudoalteromonas
haloplanktis ANT/505]
Length = 181
Score = 260 bits (666), Expect = 6e-68, Method: Composition-based stats.
Identities = 68/174 (39%), Positives = 106/174 (60%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V+I++ + F D RG+F +T+ ++L + + FVQ+NHS S G +RGLH+Q
Sbjct: 7 SIPDVKIIEPQVFGDERGFFMETFRTELFNQHCGERTFVQENHSKSAH-GILRGLHYQTQ 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR G ++D+AVD+R++SPT+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 N-TQGKLVRVTQGEVYDVAVDMRQSSPTFGQWVGVLLSAENKRQLWVPEGFAHGFYVTTE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD Y+ + + W D +++I WPL++ LP +S KD+
Sbjct: 125 TAEFVYKCTDVYNPNVEVSIKWDDPTLNIDWPLVEGKLPQLSAKDEAGLSFKNA 178
>gi|226941907|ref|YP_002796981.1| RfbC [Laribacter hongkongensis HLHK9]
gi|226716834|gb|ACO75972.1| RfbC [Laribacter hongkongensis HLHK9]
Length = 182
Score = 260 bits (666), Expect = 6e-68, Method: Composition-based stats.
Identities = 77/178 (43%), Positives = 114/178 (64%), Gaps = 10/178 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+I++ R FED RG+F ++++ + +E G FVQDNHS S G +RGLH+Q+
Sbjct: 8 IAEVKIIEPRVFEDERGFFFESFNQQRFEEAIGYPVEFVQDNHSRSSR-GVLRGLHYQQA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVRC+AG ++D+AVD+R++SPT+G V +E+SA N Q++IP GFAHGF+TL
Sbjct: 67 PHAQGKLVRCVAGAVWDVAVDLRQSSPTFGQSVGVELSAGNRRQLWIPAGFAHGFLTLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ------NLPFLN 173
+ E +YK TD+Y+ + + W D + I WP + + P +S KD P
Sbjct: 127 SAEFLYKTTDYYAPAAEVCLRWNDPVLAIAWP--EAVSPVLSVKDGQGLDWHQAPRFA 182
>gi|329118014|ref|ZP_08246727.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria bacilliformis ATCC
BAA-1200]
gi|327465902|gb|EGF12174.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria bacilliformis ATCC
BAA-1200]
Length = 179
Score = 260 bits (666), Expect = 6e-68, Method: Composition-based stats.
Identities = 74/173 (42%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+IL+ + F D RG+F +T+ K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPEVKILEPQVFGDERGFFMETFRDDWFKAHVCERTFVQENHSQSG-GGVLRGLHYQTEN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR +AG +FD+AVD+RRNSPT+G W +SA N Q+++P GFAHGF L
Sbjct: 67 -TQGKLVRVVAGAVFDVAVDLRRNSPTFGQWAGAILSAENKRQLWVPEGFAHGFYVLGGG 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ + + W D +I I WPL P +S KD L +
Sbjct: 126 AEFVYKCTDYYNPRAEHTLLWNDPAIGIAWPLHGE--PKLSAKDAAGKTLAEA 176
>gi|307825026|ref|ZP_07655248.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacter tundripaludum
SV96]
gi|307734073|gb|EFO04928.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacter tundripaludum
SV96]
Length = 181
Score = 260 bits (666), Expect = 6e-68, Method: Composition-based stats.
Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ F D RG+F ++++ + EL G FVQDNHS S +RGLH+Q
Sbjct: 8 IPDVLIIEPNVFGDERGFFFESFNRRRFAELTGCDVDFVQDNHSRSVK-NVLRGLHYQIR 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVDIRR+SP++G V LE+SA N ++IP GFAHGF+ +
Sbjct: 67 QP-QGKLVRVVQGAVFDVAVDIRRSSPSFGQSVGLELSAENKRMLWIPEGFAHGFVVISE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+++ E + +AW D +I I WPL P++S KDQ L + +
Sbjct: 126 TAEFLYKTTDYWAPEFERSIAWNDPAIGIQWPLQGE--PALSVKDQQATSLAEAE 178
>gi|298370183|ref|ZP_06981499.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria sp. oral taxon 014
str. F0314]
gi|298281643|gb|EFI23132.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria sp. oral taxon 014
str. F0314]
Length = 179
Score = 260 bits (666), Expect = 6e-68, Method: Composition-based stats.
Identities = 70/173 (40%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPEVKLLEPQVFGDARGFFMETFRDEWFKANVCDRTFVQENHSKSGK-GVLRGLHYQTEN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G W +SA N Q+++P GFAHGF L
Sbjct: 67 -TQGKLVRVVVGEVFDVAVDMRKSSPTFGKWAGEILSAENKRQLWVPEGFAHGFYVLSDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ + + + W D S+ I WPL P++S KD L +
Sbjct: 126 AEFVYKCTDYYNPKAEHSLIWNDPSVGINWPLQGE--PNLSPKDLAGKVLAEA 176
>gi|325141237|gb|EGC63736.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis CU385]
gi|325199304|gb|ADY94759.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
H44/76]
Length = 179
Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats.
Identities = 70/173 (40%), Positives = 106/173 (61%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLHYQTEN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 67 -TQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ + + + W D ++ I WPL P++S KD L++
Sbjct: 126 AEFVYKCTDYYNPKAEHSLIWNDPTVGIDWPLQGE--PNLSPKDLAGKVLSEA 176
>gi|319427033|gb|ADV55107.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella putrefaciens 200]
Length = 181
Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats.
Identities = 72/177 (40%), Positives = 105/177 (59%), Gaps = 6/177 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
I ++I++ F D RG+F +T++ K + L G FVQDNHS S G +RGLH+Q
Sbjct: 7 KIPDIKIIEPTVFGDERGFFMETWNQKQFEVLVTGKPTTFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR + G +FD+AVDIR+NS T+G WV +SA+N Q++IP GFAHGF
Sbjct: 66 TEN-TQGKLVRVVYGEVFDVAVDIRKNSSTFGQWVGEFLSADNKRQLWIPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK T++Y +E + + W D ++ I WP++ P +S KD+N +
Sbjct: 125 SDEAEFVYKCTNYYKLESEQSIRWNDNTLGIDWPIIGK--PVLSNKDKNACSFKEAK 179
>gi|183597260|ref|ZP_02958753.1| hypothetical protein PROSTU_00504 [Providencia stuartii ATCC 25827]
gi|188023575|gb|EDU61615.1| hypothetical protein PROSTU_00504 [Providencia stuartii ATCC 25827]
Length = 179
Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats.
Identities = 78/175 (44%), Positives = 110/175 (62%), Gaps = 4/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I++ + FED RG+F ++++ K E G FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIIEPKIFEDERGFFFESFNQKQFDEAVGYPVNFVQDNHSKSVK-GVLRGLHYQE 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRCI G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCIVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
N E +YK T FY+ + ++ + W D + I W P +S+KD +++
Sbjct: 126 ENAEFVYKTTKFYNPKSENTILWNDNKLSINW--NSESHPIISKKDSVGILFSEL 178
>gi|325145413|gb|EGC67689.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
M01-240013]
Length = 179
Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLHYQTEN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 67 -TQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDT 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E+ YK TD+Y E + + W D +I I WPL P++S KD L +
Sbjct: 126 AELTYKCTDYYKPEAEQVLIWNDPAIGIDWPLQGE--PNLSPKDLAGKVLAEA 176
>gi|70733809|ref|YP_257449.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas fluorescens Pf-5]
gi|68348108|gb|AAY95714.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas fluorescens Pf-5]
Length = 181
Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 106/176 (60%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++ V I++ + F D RG+F +++++K E G+ FVQDNHS S G +RGLH+Q
Sbjct: 7 DLPGVLIIEPKVFGDERGFFYESFNAKAFAEATGIDAQFVQDNHSRS-QKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR G + D+AVDIRR+SP +G WV++ + A N Q+++P GFAHGF+ L
Sbjct: 66 QN-TQGKLVRVTQGEVLDVAVDIRRSSPHFGQWVAVRLYAQNHRQLWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ + + W D ++ I W L + P +S KDQ L + D
Sbjct: 125 DFAEFLYKTTDYYTPSAERCIRWDDPTLAIDWELDEP--PQLSAKDQAGALLTEAD 178
>gi|120612800|ref|YP_972478.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidovorax citrulli AAC00-1]
gi|120591264|gb|ABM34704.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidovorax citrulli AAC00-1]
Length = 181
Score = 260 bits (665), Expect = 8e-68, Method: Composition-based stats.
Identities = 73/176 (41%), Positives = 109/176 (61%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V +L+ + F D+RG+F ++++ + E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 SIPDVVVLEPKVFGDARGFFFESFNQRAFDEATGSRHAFVQDNHSRSAR-GVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G +FD+AVD+RR+SPT+G WV E+S N Q+++P GFAHGF+ L
Sbjct: 66 RQP-QGKLVRVVRGTVFDVAVDLRRSSPTFGQWVGEELSEENQRQMWVPPGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + +YK TD+Y+ EH+ +AW D + I W PS+S KD L + +
Sbjct: 125 ESADFLYKTTDYYAPEHERCIAWNDPELGIDWRFAGE--PSLSAKDAKGAALREAE 178
>gi|21673145|ref|NP_661210.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium tepidum TLS]
gi|21646222|gb|AAM71552.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium tepidum TLS]
Length = 185
Score = 260 bits (665), Expect = 8e-68, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 108/175 (61%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V + + F D RGWF +++ + ++ FVQDN SFS G +RGLH+Q+P
Sbjct: 7 SIPDVLLFEPEVFGDERGWFCESFRQDIFEQHAGCHRFVQDNESFS-RYGVVRGLHYQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ Q KLVR I G + D+AVDIR+ SPT+G + ++ +N ++IP GFAHGF L
Sbjct: 66 PHVQGKLVRVIRGEVLDVAVDIRKGSPTFGHHTAQLLNESNRRMMWIPPGFAHGFAVLSQ 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YK TD+Y+ HD+G+ W D +I I W + ++ + +S+KD + P L++I+
Sbjct: 126 TAVFSYKCTDYYAPSHDAGIRWNDPAIGIEWSVPESEI-RLSDKDLHHPMLHEIE 179
>gi|41033607|emb|CAF18470.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoproteus tenax]
Length = 187
Score = 260 bits (665), Expect = 8e-68, Method: Composition-based stats.
Identities = 73/181 (40%), Positives = 108/181 (59%), Gaps = 4/181 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +++ F D RG+F++ Y G+ FVQ + S S G +RGLH+Q
Sbjct: 9 LEIPDVILIEPVVFPDHRGFFAELYKRTDFLAGGVPYDFVQVSVSMS-RRGVVRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLV + GR+ D+AVD+RR SP +G +V++E+SA+ ++IP GFAHGF LE
Sbjct: 68 KPAEQGKLVAVLRGRVLDVAVDVRRGSPWFGRYVAVELSADEPRLLWIPPGFAHGFQALE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T +Y +T YS +H+ V W D + I WP+ D I +SEKD+ P L + ++ FE
Sbjct: 128 DDTLFMYLMTKEYSPQHERCVRWDDPEVGIPWPIGDAI---LSEKDRRCPPLREAETNFE 184
Query: 181 Y 181
Y
Sbjct: 185 Y 185
>gi|302669916|ref|YP_003829876.1| dTDP-4-dehydrorhamnose 3,5-epimerase RfbC2 [Butyrivibrio
proteoclasticus B316]
gi|302394389|gb|ADL33294.1| dTDP-4-dehydrorhamnose 3,5-epimerase RfbC2 [Butyrivibrio
proteoclasticus B316]
Length = 181
Score = 260 bits (665), Expect = 8e-68, Method: Composition-based stats.
Identities = 74/174 (42%), Positives = 103/174 (59%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I ++++ + F DSRG+F +TY+ E G+ FVQDN S S G +RGLHFQ+
Sbjct: 10 EIEGLKVITPQVFGDSRGYFVETYNKNDFVEAGITCEFVQDNQSAS-KRGVLRGLHFQKE 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVRCI G +FD+AVD+RR+S T+G W + +SA N Q +IP GFAHGF+ L
Sbjct: 69 -FPQDKLVRCINGEVFDVAVDLRRDSKTFGKWFGVVLSAENKKQFFIPKGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YK +DFY + G+ W D I + WPL D + S+KD + +
Sbjct: 128 YAEFAYKCSDFYHPNDEGGLIWNDPDIGVEWPLQDGVELIFSDKDTKWGGIKEF 181
>gi|294788794|ref|ZP_06754035.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Simonsiella muelleri ATCC
29453]
gi|294483276|gb|EFG30962.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Simonsiella muelleri ATCC
29453]
Length = 180
Score = 260 bits (665), Expect = 8e-68, Method: Composition-based stats.
Identities = 74/174 (42%), Positives = 105/174 (60%), Gaps = 4/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI V++L+ + F D RG+F +T+ +E FVQ+NHS S +RGLH+Q
Sbjct: 7 NIPEVKLLEPKIFGDERGFFMETFRDNWFREHISDCTFVQENHSKSNK-NVLRGLHYQTA 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R++SPT+G W +SA N Q++IP GFAHGF TLE
Sbjct: 66 -HTQGKLVRVVIGSVFDVAVDLRKSSPTFGKWFGTVLSAENKRQLWIPEGFAHGFYTLEN 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
NTE +YK TD+Y + + W D +I I W L+ P++S KD L +
Sbjct: 125 NTEFVYKCTDYYDPSSEHSLLWNDPTIGIEWNLIGE--PNLSAKDMAGKILAEA 176
>gi|261365976|ref|ZP_05978859.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria mucosa ATCC 25996]
gi|288565437|gb|EFC86997.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria mucosa ATCC 25996]
Length = 179
Score = 260 bits (665), Expect = 8e-68, Method: Composition-based stats.
Identities = 68/173 (39%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V++L+ + F D+RG+F +T+ + K FVQ+NHS S G +RGLH+Q
Sbjct: 8 LPDVKLLEPQVFGDARGFFMETFRDEWFKANVCDRTFVQENHSKSGK-GVLRGLHYQTEN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G W +SA N Q+++P GFAHGF L
Sbjct: 67 -TQGKLVRVVVGEVFDVAVDMRKDSPTFGKWAGEILSAENKRQLWVPEGFAHGFYVLSDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ + + + W D ++ I WPL P++S KD L +
Sbjct: 126 AEFVYKCTDYYNPKAEHSLIWNDPTVGIEWPLQGE--PNLSPKDLAGKILAEA 176
>gi|242240691|ref|YP_002988872.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dickeya dadantii Ech703]
gi|242132748|gb|ACS87050.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dickeya dadantii Ech703]
Length = 185
Score = 260 bits (665), Expect = 8e-68, Method: Composition-based stats.
Identities = 73/176 (41%), Positives = 106/176 (60%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELG--LQDVFVQDNHSFSFDCGTIRGLHFQ 59
I ++I++ F D RG+F +T+ K ++L FVQDNHS S G +RGLH+Q
Sbjct: 7 QIPDIKIIEPTVFGDERGFFMETWHQKRFEDLVTQRPCRFVQDNHSKS-RKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR IAG +FD+AVDIR+NSPT+G V + +SA N Q++IP GFAHGF
Sbjct: 66 TENP-QGKLVRVIAGEVFDVAVDIRKNSPTFGQSVGVYLSAQNKRQLWIPAGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ + + W D+S++I WP+ + ++ +S KD+ I
Sbjct: 125 SDEAEFVYKCTDYYNPNAEHCIIWNDESLNIDWPIENEMV-ILSAKDEQGKKFQDI 179
>gi|29726024|gb|AAO88950.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]
Length = 183
Score = 260 bits (665), Expect = 8e-68, Method: Composition-based stats.
Identities = 73/177 (41%), Positives = 107/177 (60%), Gaps = 5/177 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ + F D RG+F +T+ + +E G+ FVQDN S S G +RGLHFQ+
Sbjct: 7 KIQDLLIIEPKVFGDDRGFFYETFQKQRYREAGIDAEFVQDNRSRSSK-GVLRGLHFQKT 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+Q KLV G +FD+AVD+R NSPT+G + ++ ++ N LQ Y+P GFAHGF L
Sbjct: 66 -KSQGKLVTVTDGEVFDVAVDLRPNSPTFGQYETIILTGKNKLQFYVPPGFAHGFCVLSD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
+ YK TD+Y +SG+ W D S++I WP+ + P +SEKD+ P L I +
Sbjct: 125 TADFQYKCTDYYDPSDESGLLWNDASLNIQWPIEN---PLLSEKDKLQPELAAIRNN 178
>gi|66048160|ref|YP_238001.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
syringae B728a]
gi|63258867|gb|AAY39963.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
syringae B728a]
Length = 181
Score = 260 bits (665), Expect = 8e-68, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 108/176 (61%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V IL+ + F D RG+F +++++K + GL FVQDNHS S G +RGLH+Q
Sbjct: 7 KLPEVLILEPKVFGDERGFFYESFNAKAFQAATGLTREFVQDNHSRS-QQGVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQ KLVR G++ D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L
Sbjct: 66 EN-AQGKLVRVTVGKVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+Y+ + +AW D + I W P++S KDQ L + D
Sbjct: 125 EHAEFLYKTTDYYTPSAERCIAWDDADLAIDWQFDGQ--PNLSAKDQQGKRLKEAD 178
>gi|172036645|ref|YP_001803146.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. ATCC 51142]
gi|171698099|gb|ACB51080.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. ATCC 51142]
Length = 181
Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats.
Identities = 73/176 (41%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I++ R F D RG+F ++Y+ K E G++ FVQDNHS S +RGLH+Q
Sbjct: 7 KIPDVVIIEPRVFGDDRGFFYESYNQKAFTEATGIERNFVQDNHSRS-QKNVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G + D+AVDIR++SPT+G WVS +S N Q ++P GFAHGF+ L
Sbjct: 66 QQP-QGKLVRVVVGEVLDVAVDIRKSSPTFGQWVSCLLSEENKRQFWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ +++ + W D + I W L D P +S+KDQ +
Sbjct: 125 DAAEFLYKTTDYYAPQYERSILWNDPDLAIDWQLKDE--PKLSKKDQEGLPFKAAE 178
>gi|10803348|emb|CAC13136.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gluconacetobacter xylinus]
Length = 185
Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats.
Identities = 78/178 (43%), Positives = 108/178 (60%), Gaps = 1/178 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N+ + +L +F D RG+FS+T+++ +KE+G+ FVQDNHS S G +RGLH Q
Sbjct: 7 NVAGIILLTPPRFGDERGYFSETFNAARMKEIGIPGPFVQDNHSLSRARGVVRGLHCQLS 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ Q KLVRC G I+D+ VDIR SPT+G WV +S NG Q++IPTGF HGF TL
Sbjct: 67 PHPQGKLVRCTRGSIWDVGVDIRAGSPTFGQWVGATLSEENGSQLWIPTGFLHGFCTLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
N EV YK TD++ + + V W D + I WP+ +S KD + + +D F
Sbjct: 127 NAEVQYKCTDYWDRDCERSVRWDDPLLAIDWPVTPK-DAILSAKDADALPFSSVDDWF 183
>gi|255282133|ref|ZP_05346688.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bryantella formatexigens DSM
14469]
gi|255267452|gb|EET60657.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bryantella formatexigens DSM
14469]
Length = 186
Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats.
Identities = 70/173 (40%), Positives = 99/173 (57%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I ++++ F D RG+F +TY+ K G+ FVQDN S S G +RGLHFQ
Sbjct: 10 EIEGLKVITPAVFGDERGYFMETYNYNDYKAAGIDMEFVQDNQSAS-KKGVLRGLHFQI- 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR ++G +FD+AVD+R S TYG W +SA N Q +IP FAHGF+ L
Sbjct: 68 NFPQDKLVRVVSGEVFDVAVDLRPGSATYGKWHGEILSAENKKQFFIPKNFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E YK TDFY + G+ W D I + WP+ + + ++SEKD+ + +
Sbjct: 128 YAEFAYKCTDFYHPNDEGGLMWNDPDIGVAWPIQEGMELTISEKDRKWGGIRE 180
>gi|291460665|ref|ZP_06600055.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oribacterium sp. oral taxon
078 str. F0262]
gi|291416624|gb|EFE90343.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oribacterium sp. oral taxon
078 str. F0262]
Length = 213
Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats.
Identities = 81/197 (41%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ DSRG+F +TY+ + ++E GL FVQDN S S G +RGLHFQ+
Sbjct: 20 IRGLYIIEPAVHGDSRGYFMETYNQRDMEEAGLNMRFVQDNQSMSVR-GVLRGLHFQKQ- 77
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q KLVR I GR++D+AVD+R S +YG +E++A N Q YI GFAHGF+ L
Sbjct: 78 YPQGKLVRVIRGRVYDVAVDLREGSESYGEHFGVELTAENHRQFYISEGFAHGFLVLSEE 137
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEKD 166
E YKVTDFY + G+AW D + I WP L D +SEKD
Sbjct: 138 AEFCYKVTDFYRPGDEGGIAWNDPELHIDWPELTGTYPGSADASSYCLKDGTKLILSEKD 197
Query: 167 QNLPFLNQIDSPFEYDG 183
Q L + F + G
Sbjct: 198 QKWLGLRES---FHFTG 211
>gi|154247480|ref|YP_001418438.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthobacter autotrophicus
Py2]
gi|154161565|gb|ABS68781.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthobacter autotrophicus
Py2]
Length = 185
Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats.
Identities = 84/181 (46%), Positives = 112/181 (61%), Gaps = 1/181 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I + + +F D+RG+FS+ + + ++ F+QDN S S GT+RGLHFQ
Sbjct: 6 LAIPEIVKITPARFGDARGYFSEVFKDEWFRKNVSDSTFIQDNQSLSSTVGTVRGLHFQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC AG IFD+AVDIR SPT+G WV +E++ NG Q++IP GFAHGF TL
Sbjct: 66 DPFAQGKLVRCTAGAIFDVAVDIRVGSPTFGRWVGVELTPENGDQLWIPPGFAHGFATLV 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
++ + YKVT YS HD G+ W D I I WPL T +SEKD+ P L + F
Sbjct: 126 PDSVIFYKVTAPYSAAHDRGLLWNDPEIGIDWPLK-TGQAVLSEKDKVQPRLADLPPSFA 184
Query: 181 Y 181
Y
Sbjct: 185 Y 185
>gi|170698773|ref|ZP_02889837.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria
IOP40-10]
gi|170136330|gb|EDT04594.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria
IOP40-10]
Length = 183
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 71/175 (40%), Positives = 110/175 (62%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V++++ + F D+RG+F ++++ + E G FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKLIEPKVFGDARGYFYESFNGREFAEHIGPGIEFVQDNHSRSAK-GVLRGLHYQVQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVDIRR SPT+G WV + +SA+N Q+++P GFAHGF+ L
Sbjct: 69 -HAQGKLVRVVEGEVFDVAVDIRRRSPTFGKWVGVILSADNHRQLWVPPGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD++ EH+ + W D I I WP+ P ++ KD L++ +
Sbjct: 128 AAQFLYKTTDYWYPEHERCIVWDDPEIGIEWPI--DAAPVLAPKDAAGKRLSEAE 180
>gi|113475072|ref|YP_721133.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Trichodesmium erythraeum
IMS101]
gi|110166120|gb|ABG50660.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Trichodesmium erythraeum
IMS101]
Length = 181
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 73/176 (41%), Positives = 111/176 (63%), Gaps = 4/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V +++ + F D RG+F ++++ + E G+ FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPEVLLIEPKVFGDERGFFMESFNQRNFSEKTGVNLEFVQDNHSRSSQ-GVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQ KL+R + G IFD+AVDIR+NSP +G WV +SA N Q+++P GFAHGF +
Sbjct: 66 Q-QAQGKLLRVVLGEIFDVAVDIRKNSPNFGKWVGYLLSAENKRQLWVPPGFAHGFFVVS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+V+YK TD+Y+ E++ + W D I I+WP+ + I +S+KD++ L + D
Sbjct: 125 ETADVLYKTTDYYAPEYERSILWNDSEIGISWPI-NGIEVKLSQKDKDGTTLKEAD 179
>gi|303238695|ref|ZP_07325228.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetivibrio cellulolyticus
CD2]
gi|302593814|gb|EFL63529.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acetivibrio cellulolyticus
CD2]
Length = 182
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 79/173 (45%), Positives = 114/173 (65%), Gaps = 3/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++++ F DSRG+F ++Y+ +ELGL FVQDNHS S G +RG+HFQ
Sbjct: 10 GIRDLVIIESKVFGDSRGFFMESYNKASFEELGLNMEFVQDNHSKS-KKGVLRGIHFQTK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
YAQ KLVR I GR++D+AVD+R+ S T+G W ++E++ N YIP GF H F+T+E
Sbjct: 69 -YAQGKLVRVIKGRVYDVAVDLRKGSETFGKWYAIELTEENKTMFYIPEGFGHAFLTMED 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+TE YK T+ Y E+D+G+ ++DK I I WP + +SEKD+ LP L +
Sbjct: 128 DTEFSYKTTNIYHPEYDAGIIYKDKDIAIDWPNI-GCEFILSEKDKVLPSLKE 179
>gi|56684535|gb|AAW22498.1| RmlC [Lactobacillus rhamnosus]
Length = 190
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 78/180 (43%), Positives = 112/180 (62%), Gaps = 1/180 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+ ++T F D+RG+F+ TY+ + E G+++ F QDN S S + G +RG+H+Q
Sbjct: 9 KLKDVKFVETDVFGDNRGFFTGTYTREKFVEAGIKNDFNQDNQSLSAEAGVLRGMHYQMA 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVR + G + D+ VDIR+ SPTYG W +S N Q+ +P GFAHGF+TL
Sbjct: 69 PYAQTKLVRVVTGVVEDVLVDIRKGSPTYGHWEGYILSQYNHRQLLVPKGFAHGFITLTP 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N +YKV +Y+ E D G+A+ D I I WP+ T +SEKDQ+ P L ++ F Y
Sbjct: 129 NVNFVYKVEGYYAPEADRGIAFDDPDIGIDWPMS-TAHLIMSEKDQHHPQLKDAENNFIY 187
>gi|229587853|ref|YP_002869972.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas fluorescens
SBW25]
gi|229359719|emb|CAY46567.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas fluorescens
SBW25]
Length = 181
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 76/176 (43%), Positives = 109/176 (61%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V I++ + F D RG+F ++Y+++ + G FVQDNHS S G +RGLH+Q
Sbjct: 7 ELPGVLIIEPKVFGDERGFFYESYNARNFAQATGQHVDFVQDNHSRS-QKGVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AQ KLVR AG + D+AVDIRR+SP +G W S+ +SA N Q++IP GFAHGF+ L
Sbjct: 66 E-HAQGKLVRVTAGEVLDVAVDIRRSSPHFGKWASVRLSAENSRQLWIPPGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+Y+ + + W D +DI W T P++S KDQN L + D
Sbjct: 125 DSAEFLYKTTDYYTPSAERCIRWDDADLDIDWQFAGT--PTLSGKDQNGKSLKEAD 178
>gi|312877140|ref|ZP_07737111.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caldicellulosiruptor
lactoaceticus 6A]
gi|311796114|gb|EFR12472.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caldicellulosiruptor
lactoaceticus 6A]
Length = 193
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 79/174 (45%), Positives = 111/174 (63%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ FED+RG+F ++++ K E+GL FVQDNHS S G +RGLHFQ P
Sbjct: 11 IKDLYIIEPTVFEDNRGFFMESWNEKEFNEIGLNIKFVQDNHSRS-KKGVLRGLHFQ-EP 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q KLVR I G +FD+AVDIR +SPT+ W + + +N +YIP GF HGF+TL
Sbjct: 69 YPQGKLVRVIRGAVFDVAVDIREDSPTFKKWFGIVLDEHNRRMLYIPEGFLHGFLTLSEW 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL--PSVSEKDQNLPFLNQ 174
+V+YK T++Y E+D G+ W D ++I WPL + + P +SEKD LP +
Sbjct: 129 ADVLYKATEYYYKEYDRGIIWYDPDLEIKWPLEEYGIDKPILSEKDSQLPTFEE 182
>gi|325105319|ref|YP_004274973.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pedobacter saltans DSM 12145]
gi|324974167|gb|ADY53151.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pedobacter saltans DSM 12145]
Length = 182
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 81/177 (45%), Positives = 114/177 (64%), Gaps = 2/177 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + +++ + ++D RG+F ++Y+ KL KE G+ FVQDN S+S GT+RGLH Q P
Sbjct: 8 IKGLIVIEPKIWKDDRGYFYESYNEKLFKEAGIDTSFVQDNQSYS-QKGTLRGLHAQANP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVR I G++ D+AVDIR++SPTYG + S+E+S N ++P GF HGF+TLE N
Sbjct: 67 FAQGKLVRVIQGKVLDVAVDIRKDSPTYGQYFSVELSGENFKMFWVPPGFLHGFITLEDN 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
T YKVT Y + GV W D ++I W DT +SEKD+ L + +SPF
Sbjct: 127 TIFSYKVTGLYDKASELGVLWNDPDLNIDWKF-DTRQAILSEKDKQLISFKEFNSPF 182
>gi|192288554|ref|YP_001989159.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
TIE-1]
gi|192282303|gb|ACE98683.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
TIE-1]
Length = 185
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 90/178 (50%), Positives = 118/178 (66%), Gaps = 1/178 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+I+ R F DSRG FS+TY+ + + G+ FVQDN S S GT+RGLHFQ P
Sbjct: 9 IEAVKIITPRAFADSRGTFSETYNRQRFVDHGVALEFVQDNQSISAAVGTVRGLHFQSAP 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVR GRI D+AVD+RR+SPTYG WV+ E+SA +G Q+ IP GFAHGF TLE +
Sbjct: 69 FAQDKLVRVAKGRILDVAVDLRRSSPTYGQWVAEELSAEDGKQLLIPIGFAHGFCTLEPD 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
T + YKVT++YS HD G+AW D + + WP+ +S+KD LP + + FE
Sbjct: 129 TVLAYKVTNYYSPPHDLGIAWNDPDLAVRWPVT-ADQAVLSDKDLKLPPFASLPNYFE 185
>gi|253579894|ref|ZP_04857162.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848893|gb|EES76855.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 184
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 102/173 (58%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I +++++ F D+RG+F +TY+ KE G+ FVQDN S S G +RGLHFQ
Sbjct: 11 GIKGLKVVEPTVFGDARGYFMETYNYNDFKEAGIDVEFVQDNQS-SSHKGVLRGLHFQI- 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G +FD+AVD+R S TYG W + +SA N Q +IP GFAHGF+ L
Sbjct: 69 NYPQDKLVRVVNGEVFDVAVDLREGSETYGKWFGVVLSAENKKQFFIPKGFAHGFLVLSE 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ E +YK +DFY + G+ W D I + WP+ + + S S+KD +
Sbjct: 129 HAEFVYKCSDFYHPNDEGGLIWNDPDIGVEWPIPEGMELSFSDKDTKWGSFKE 181
>gi|238021433|ref|ZP_04601859.1| hypothetical protein GCWU000324_01333 [Kingella oralis ATCC 51147]
gi|237868413|gb|EEP69419.1| hypothetical protein GCWU000324_01333 [Kingella oralis ATCC 51147]
Length = 180
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 73/173 (42%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+IL+ + F D RG+F +T+ E + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKILEPQVFGDERGFFMETFRDNWFNEHIARRTFVQENHSKSNK-GVLRGLHYQTEN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G + D+AVD+RR+SPT+G W +SA+N Q+++P GFAHGF LE +
Sbjct: 67 -TQGKLVRVVVGSVLDVAVDLRRSSPTFGKWAGAVLSADNKRQLWVPEGFAHGFYVLEDH 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
TE +YK TD+Y+ + + + W D +I I W L PS+S KD L +
Sbjct: 126 TEFVYKCTDYYNPKAEHSLIWNDPTIGIDWQLNGE--PSLSAKDLAGKPLAEA 176
>gi|209518632|ref|ZP_03267450.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. H160]
gi|209500915|gb|EEA00953.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. H160]
Length = 183
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 68/175 (38%), Positives = 110/175 (62%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F ++++++ E +G+ FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPKVFGDARGFFFESFNAREFAEKVGVDAEFVQDNHSRSAK-GVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVDIR++SP +G WV + +S N Q+++P GFAHGF+ L
Sbjct: 69 -HAQGKLVRVVEGEVFDVAVDIRKSSPNFGKWVGVTLSVENHRQLWVPPGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + +YK TD++ EH+ + W D + I WP+ P ++ KD L +
Sbjct: 128 SAQFLYKTTDYWFPEHERSIIWNDPDVGIEWPI--DFEPLLAAKDAAGKRLADAE 180
>gi|39933195|ref|NP_945471.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Rhodopseudomonas palustris
CGA009]
gi|39652820|emb|CAE25562.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Rhodopseudomonas palustris
CGA009]
Length = 185
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 90/178 (50%), Positives = 117/178 (65%), Gaps = 1/178 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+I+ R F DSRG F +TY+ + + G+ FVQDN S S GT+RGLHFQ P
Sbjct: 9 IEAVKIITPRAFADSRGSFVETYNRQRFVDHGVALEFVQDNQSISAAVGTVRGLHFQSAP 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVR GRI D+AVD+RR+SPTYG WV+ E+SA +G Q+ IP GFAHGF TLE +
Sbjct: 69 FAQDKLVRVAKGRILDVAVDLRRSSPTYGQWVAEELSAEDGKQLLIPIGFAHGFCTLEPD 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
T V YKVT++YS HD G+AW D + + WP+ +S+KD LP + + FE
Sbjct: 129 TVVAYKVTNYYSPPHDLGIAWNDPDLAVRWPVT-ADQAVLSDKDLELPPFASLPNYFE 185
>gi|145298431|ref|YP_001141272.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142851203|gb|ABO89524.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 183
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 77/175 (44%), Positives = 108/175 (61%), Gaps = 4/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I + + F D RG+F ++++ + +E G Q F+QDNHS S G +RGLH+Q
Sbjct: 7 SIPEVLIFEPQVFGDERGFFFESFNYQQFEEAVGHQVKFIQDNHSRSSQ-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVRCI G +FD+AVDIR SP +G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 66 PPHAQGKLVRCIVGEVFDVAVDIRETSPNFGQWVGVNLSAENKRQLWIPEGFAHGFLTLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E++YK T++Y H+ + W D + I WP I +S+KD P
Sbjct: 126 TAAEILYKTTNYYQPSHERSIIWNDNVLAIKWPFDKNI--ILSKKDSLAPHFIDF 178
>gi|86748688|ref|YP_485184.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
HaA2]
gi|86571716|gb|ABD06273.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
HaA2]
Length = 185
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 93/178 (52%), Positives = 116/178 (65%), Gaps = 1/178 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+I+ + F DSRG F +TY+ + E G+ FVQDN S S GTIRGLHFQ P
Sbjct: 9 IEAVKIIVPKGFADSRGVFCETYNHRRFVEYGVSFDFVQDNQSSSARAGTIRGLHFQSHP 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLVR + GRI D+AVD+RR SPTYG WV+ E+SA+NG Q+ +P GFAHGF TLE
Sbjct: 69 AAQDKLVRVLRGRILDVAVDLRRTSPTYGRWVAEELSADNGKQLLVPVGFAHGFCTLEPE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
T V+YKVT +Y+ HD GVAW D + I WP+ +SEKD LP + + FE
Sbjct: 129 TLVLYKVTGYYAPAHDLGVAWNDPDLAIDWPVS-ADQAVLSEKDMQLPSFRSLPAYFE 185
>gi|332686303|ref|YP_004456077.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Melissococcus plutonius ATCC
35311]
gi|332370312|dbj|BAK21268.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Melissococcus plutonius ATCC
35311]
Length = 190
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 79/182 (43%), Positives = 111/182 (60%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ F DSRG+F+++YS + + GL FVQDNHS S + G +RGLHFQ+
Sbjct: 7 KLQDVKIIEMDVFGDSRGFFTESYSRQKFETFGLNFDFVQDNHSLSSEAGVLRGLHFQKG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVR I G + D+ VDIR+NSPTYG W S +S N Q+ +P G+AHGF+TL
Sbjct: 67 KAAQTKLVRVITGALLDVIVDIRKNSPTYGKWESYILSEYNHRQLLVPKGYAHGFVTLTP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI--DSPF 179
N YK ++Y+ E D G+A+ D + I WP+ D SEKD+ P + ++ F
Sbjct: 127 NVNFAYKCDNYYNDEADGGIAFDDPDLGIAWPM-DLNKAITSEKDKKHPTFKEFEQENLF 185
Query: 180 EY 181
Y
Sbjct: 186 VY 187
>gi|288560318|ref|YP_003423804.1| dTDP-4-dehydrorhamnose 3,5-epimerase RfbC2 [Methanobrevibacter
ruminantium M1]
gi|288543028|gb|ADC46912.1| dTDP-4-dehydrorhamnose 3,5-epimerase RfbC2 [Methanobrevibacter
ruminantium M1]
Length = 187
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 78/180 (43%), Positives = 103/180 (57%), Gaps = 4/180 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V ++ FED RG+F +TY+ K G+ FVQDN S S G +RGLHFQ
Sbjct: 10 EIEGVFTVEPTVFEDERGYFMETYNENDFKAEGIDLTFVQDNQSKSSK-GVLRGLHFQYT 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR I G +FD+ VD+R++SPTYG WV +S N Q++IP GFAHGF+ L
Sbjct: 69 QP-QGKLVRVIKGEVFDVGVDLRKDSPTYGKWVGEILSEENKKQLFIPKGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQIDSPF 179
E +YK TDFY + + G+ W D I I WPL L +SEKD+ + + + F
Sbjct: 128 EAEFVYKCTDFYKGDDEGGIQWNDPEIGIKWPLGNLKEEDIILSEKDKLWKPMKETPTDF 187
>gi|221201086|ref|ZP_03574126.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans
CGD2M]
gi|221206462|ref|ZP_03579475.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans
CGD2]
gi|221173771|gb|EEE06205.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans
CGD2]
gi|221178936|gb|EEE11343.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans
CGD2M]
Length = 183
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 71/175 (40%), Positives = 109/175 (62%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F ++++ + E FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPKVFGDARGYFYESFNGREFAEQVEPGVEFVQDNHSRSAK-GVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVDIRR+SP +G WV + +SA+N Q+++P GFAHGF+ L
Sbjct: 69 -HAQGKLVRVVEGEVFDVAVDIRRSSPNFGKWVGVTLSADNHRQLWVPPGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD++ EH+ +AW D I I WP+ P ++ KD L + +
Sbjct: 128 AAQFLYKTTDYWYPEHERSIAWNDPDIGIEWPI--DFEPLLAAKDAAGKRLAEAE 180
>gi|117919830|ref|YP_869022.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sp. ANA-3]
gi|117612162|gb|ABK47616.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sp. ANA-3]
Length = 183
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 73/176 (41%), Positives = 108/176 (61%), Gaps = 4/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
I V++++ + F D RG+F +T++ K + L G FVQDNHS S G +RGLH+Q
Sbjct: 7 KIPDVKVIEPKVFGDERGFFMETWNQKQFENLVTGKSTTFVQDNHSKS-KRGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR I+G +FD+AVDIR++SPT+G WV +SA N Q++IP GFAHGF +
Sbjct: 66 TK-DTQGKLVRVISGEVFDVAVDIRKDSPTFGQWVGEYLSAENKRQLWIPEGFAHGFYVI 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T +Y+ ++ + W D ++ I WP+ +T +S KD N ++I
Sbjct: 125 SNECEFVYKCTKYYNPNYEKCLIWNDSNLQIDWPIPETERVLLSSKDSNGIPFDKI 180
>gi|302186966|ref|ZP_07263639.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
syringae 642]
Length = 181
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 76/176 (43%), Positives = 108/176 (61%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V IL+ + F D RG+F +++++K + GL FVQDNHS S G +RGLH+Q
Sbjct: 7 KLPEVLILEPKVFGDERGFFYESFNAKAFQAATGLTRDFVQDNHSRS-QRGVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQ KLVR G++ D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L
Sbjct: 66 EN-AQGKLVRVTFGKVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+Y+ + +AW D + I W PS+S KDQ L + D
Sbjct: 125 EHAEFLYKTTDYYTPSAERCIAWDDADLAIDWQFDGQ--PSLSAKDQQGKRLKEAD 178
>gi|255020605|ref|ZP_05292668.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidithiobacillus caldus ATCC
51756]
gi|254969990|gb|EET27489.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidithiobacillus caldus ATCC
51756]
Length = 182
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 107/176 (60%), Gaps = 2/176 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V ++ R F D+RG+F ++++ + GL FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPEVLLITPRVFGDARGFFLESWNRRSFAAAGLDLDFVQDNHSRS-QRGVLRGLHYQI 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR +AG +FD+AVD+RR+SP +G WV +SA+N +++P GFAHGF+ L
Sbjct: 65 RQP-QGKLVRVVAGEVFDVAVDLRRSSPHFGRWVGARLSADNAQMLWVPPGFAHGFLVLS 123
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD+Y E + + W D S+ + WPL P+++ KD L Q++
Sbjct: 124 EQADFLYKTTDYYLPEAERCLRWDDPSVGVQWPLAPGSQPTLAAKDAAGSLLAQLE 179
>gi|190150743|ref|YP_001969268.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|307250739|ref|ZP_07532673.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|307264145|ref|ZP_07545739.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|189915874|gb|ACE62126.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|306857243|gb|EFM89365.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306870519|gb|EFN02269.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 180
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 69/174 (39%), Positives = 101/174 (58%), Gaps = 4/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++L+ + F D RG+F +T+ + ++ FVQ+NHS S G +RGLH+Q
Sbjct: 7 KIPDVKLLEPQVFGDERGFFMETFRDEWFRQNVADRTFVQENHSKSIK-GVLRGLHYQTE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 N-TQGKLVRVVQGAVFDVAVDLRKSSPTFGQWVGEVLSAENKRQLWVPEGFAHGFYVLTE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YK TD+Y+ + + + W D ++ I W L PS+S KD L
Sbjct: 125 TAEFTYKCTDYYNPKAEHSLIWNDPTVAIDWNLDGE--PSLSVKDLAGKVLADA 176
>gi|170748798|ref|YP_001755058.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium
radiotolerans JCM 2831]
gi|170655320|gb|ACB24375.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium
radiotolerans JCM 2831]
Length = 183
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 85/178 (47%), Positives = 114/178 (64%), Gaps = 1/178 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+ + ++F D+RGWFS+T+ + L G+ F+QDN SFS GT+RGLHFQ
Sbjct: 7 EIPDVKRIVLKRFGDARGWFSETFRADTLARAGIATPFIQDNQSFSAPQGTVRGLHFQIA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKL+R + G I D+AVDIR +SPTYG +V++ + A G Q+YIP GFAHGF TL
Sbjct: 67 PRAQAKLIRVLQGAILDVAVDIRSDSPTYGKYVAVTLDAEKGEQLYIPHGFAHGFCTLTP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ V YKV D+YS EHD + W D +I I WP+ +S+KD+ P L + S F
Sbjct: 127 DVMVTYKVDDYYSPEHDRALFWNDPAIGIPWPVSGEA-AILSDKDRRAPKLADLGSVF 183
>gi|148976929|ref|ZP_01813584.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrionales bacterium SWAT-3]
gi|145963803|gb|EDK29063.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrionales bacterium SWAT-3]
Length = 187
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 77/176 (43%), Positives = 109/176 (61%), Gaps = 6/176 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ F D RG+F +T+S K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVKIIEPTVFGDERGFFMETWSQKQFEELVTGKPTPFVQDNHSKS-KKGILRGLHYQT 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR ++G +FD+AVDIR+ SPT+G WV +SA N Q+++P GFAHGF
Sbjct: 67 EN-TQGKLVRVVSGEVFDVAVDIRKGSPTFGQWVGEYLSAENKRQLWVPEGFAHGFYVTS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ + + W D++IDI WP +P +S KD+ +N+I+
Sbjct: 126 EEAEFVYKCTDYYNPAAEETLMWDDETIDIKWPFQG--VPLLSGKDRKGTLINKIN 179
>gi|159896798|ref|YP_001543045.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Herpetosiphon aurantiacus
ATCC 23779]
gi|159889837|gb|ABX02917.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Herpetosiphon aurantiacus
ATCC 23779]
Length = 188
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 83/183 (45%), Positives = 110/183 (60%), Gaps = 6/183 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V I+K F D RG+F +TY +LGL FVQDNHS S G +RGLH+Q
Sbjct: 10 LDGVVIIKPSVFADERGFFLETYHQIKFADLGLPTDFVQDNHSRS-KQGVLRGLHYQDER 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AKLVRC G IFD+AVD+R SPT+G WV +E+SA+N LQ IP+GF HGF+ L
Sbjct: 69 QPMAKLVRCSVGSIFDVAVDLRVGSPTFGKWVGVELSADNFLQFLIPSGFGHGFVVLSEF 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ-IDSP-FE 180
EV Y+ T Y+ E + V W D I I WP+ + P++S +DQ L +++P F
Sbjct: 129 AEVQYRCTGLYAPETEGAVRWNDPQIGIEWPISE---PTLSGRDQAAMSLADYLENPAFR 185
Query: 181 YDG 183
Y G
Sbjct: 186 YRG 188
>gi|254556200|ref|YP_003062617.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus plantarum JDM1]
gi|254045127|gb|ACT61920.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus plantarum JDM1]
Length = 193
Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats.
Identities = 76/182 (41%), Positives = 109/182 (59%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ F D RG+F++TYS + KE G+ F+QDN S S + G +RGLHFQR
Sbjct: 10 KLQDVKIIEPAVFGDKRGFFTETYSDRDFKEAGIDFDFIQDNQSLSAEAGVLRGLHFQRG 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ VD+R SPTYG W IS +N Q+ +P GFAHGF+TL
Sbjct: 70 KAAQTKLIRVVTGAVLDVIVDVRAGSPTYGEWEGYIISESNHRQLLVPRGFAHGFVTLTD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID--SPF 179
N +YK ++Y+ E D G+ + DK ++I WP+ D SEKD + + +PF
Sbjct: 130 NVNFLYKCDNYYNAEADGGITFMDKDLNINWPI-DYDQAITSEKDAKQQTFKEFEQNNPF 188
Query: 180 EY 181
Y
Sbjct: 189 VY 190
>gi|89073289|ref|ZP_01159819.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Photobacterium sp.
SKA34]
gi|89050999|gb|EAR56463.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Photobacterium sp.
SKA34]
Length = 183
Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats.
Identities = 71/175 (40%), Positives = 104/175 (59%), Gaps = 6/175 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE--LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
I V+I++ F D RG+F +T++ K +E G FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVKIIEPSVFGDERGFFMETWNQKKFEELVAGRPTRFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++S T+G WV + +SA N Q+++P GFAHGF
Sbjct: 66 TEN-TQGKLVRVVSGEVFDVAVDIRKDSATFGRWVGVYLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK TD+Y+ + + W D + I WP+ + VSEKD+ + +
Sbjct: 125 SDEAEFVYKCTDYYNPSAEHSILWNDNYLKIEWPIEGEV--IVSEKDKAGNYFDD 177
>gi|253563189|ref|ZP_04840646.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_2_5]
gi|265762927|ref|ZP_06091495.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_16]
gi|251946965|gb|EES87247.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_2_5]
gi|263255535|gb|EEZ26881.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_16]
Length = 191
Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats.
Identities = 73/180 (40%), Positives = 107/180 (59%), Gaps = 2/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V I++ R F D RG+F ++++ + E + +FVQDN S S G IRGLHFQ+P
Sbjct: 7 DIKSVVIIEPRLFRDERGYFFESFNQNVFIEKVCKTMFVQDNESKSS-YGVIRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR + G + D+AVDIR+ SPT+G +S+E++ +N Q +IP GFAHGF L
Sbjct: 66 PFAQSKLVRVVKGAVLDVAVDIRKGSPTFGKHISVELTEDNHRQFFIPRGFAHGFSVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +FY+ + + +AW D + I W + +SEKD L F+Y
Sbjct: 126 EVVFQYKCDNFYAPQCEGAIAWDDPDLGIDWKIP-MEEVILSEKDSCHSALKDAAWLFDY 184
>gi|326318817|ref|YP_004236489.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323375653|gb|ADX47922.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 181
Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +L+ + F D+RG+F ++++ + E G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVVVLEPKVFGDARGFFFESFNQRAFDEATGSRHAFVQDNHSRSAR-GVLRGLHYQIR 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVD+RR+SPT+G WV E+S N Q+++P GFAHGF+ L
Sbjct: 67 QP-QGKLVRVVRGTVFDVAVDLRRSSPTFGQWVGEELSEENQRQMWVPPGFAHGFVVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + +YK TD+Y+ EH+ +AW D I I W PS+S KD L + +
Sbjct: 126 SADFLYKTTDYYAPEHERCIAWNDPGIGIDWRFAGE--PSLSAKDAKGTSLREAE 178
>gi|75758500|ref|ZP_00738621.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|228904956|ref|ZP_04069008.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis IBL
4222]
gi|74494027|gb|EAO57122.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|228854698|gb|EEM99304.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis IBL
4222]
Length = 194
Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats.
Identities = 86/179 (48%), Positives = 113/179 (63%), Gaps = 3/179 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V I++ K D RG+F +TY+ K + L LQ FVQDN S S GTIRGLH+Q P
Sbjct: 14 LDGVFIIELDKCSDKRGYFIETYNKKKFELLDLQGEFVQDNQSLSVHTGTIRGLHYQLNP 73
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ K+V CI+G I+D+ VDIR+ SPTYG W +S N + +P GFAHGF T+E N
Sbjct: 74 KAQMKVVSCISGSIYDVVVDIRKGSPTYGQWFGTILSEYNNRLLTVPKGFAHGFCTIEPN 133
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
T V YKV ++YS H+ G+ W D++I I WP T P +SEKD+ LP L + F Y
Sbjct: 134 TIVQYKVDEYYSPNHEEGILWNDETIGIFWP---TNQPILSEKDRKLPRLKDTNINFVY 189
>gi|256830322|ref|YP_003159050.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfomicrobium baculatum
DSM 4028]
gi|256579498|gb|ACU90634.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfomicrobium baculatum
DSM 4028]
Length = 185
Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats.
Identities = 79/173 (45%), Positives = 109/173 (63%), Gaps = 4/173 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I V +L R F D RG+F ++++++ K G+ VFVQDNHS S G +RGLH+Q
Sbjct: 6 LSIPEVILLTPRVFGDDRGFFYESFNAQAFTKATGVATVFVQDNHSCS-QRGVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
PPYAQ KLVR + G +FD+AVDIRR S T+G WV +SA N Q++IP GFAHGF+TL
Sbjct: 65 LPPYAQGKLVRVVHGEVFDVAVDIRRYSSTFGKWVGTLLSAENKRQLWIPPGFAHGFITL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
E +YK T +Y+ + + W D I I WP + P +S+KD+ L
Sbjct: 125 SDRAEFLYKTTAYYAPVAERCIRWNDLDIGIDWPYSEA--PFLSKKDKLGTSL 175
>gi|167031308|ref|YP_001666539.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida GB-1]
gi|166857796|gb|ABY96203.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida GB-1]
Length = 181
Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats.
Identities = 72/175 (41%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ + F DSRG+F + ++++ + G+ FVQDNHS S G +RGLH+Q
Sbjct: 8 IPEVLIIEPKVFGDSRGFFFEAFNAREFARQTGVNVEFVQDNHSRSIK-GVLRGLHYQVA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G I DIAVD+R++SPT+G WV++ +SA+N Q++IP GFAHGF +
Sbjct: 67 N-TQGKLVRVVHGEIRDIAVDVRKSSPTFGQWVAVHLSADNHRQLWIPPGFAHGFAVMSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+Y+ D + W D + I W L P +S+KD+ L + +
Sbjct: 126 SAEFLYKTTDYYNPGADRCIRWDDPQLGIDWGLRQP--PVLSDKDKVGLPLAEAE 178
>gi|319784647|ref|YP_004144123.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317170535|gb|ADV14073.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 184
Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats.
Identities = 83/176 (47%), Positives = 115/176 (65%), Gaps = 1/176 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I+ V + ++ D+RG+F +TY+++ + G+ FVQDNHS+S G +RGLH+Q
Sbjct: 7 LGIDGVLEIVPKRHGDARGFFVETYNAERFSQAGIDLAFVQDNHSYSAAAGVLRGLHYQL 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KL+R I G I D+AVDIRR+S T+G WV+LE+SA G QI +P GFAHGF+TL
Sbjct: 67 APRAQDKLLRVIRGSILDVAVDIRRSSKTFGKWVALEVSAEKGNQILVPKGFAHGFVTLV 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+TEV+YKVTD YS HD + + D +I I WP L +S+KD P L +
Sbjct: 127 PDTEVLYKVTDTYSQAHDRSIRFDDPAIGIEWPSLTGGF-QLSDKDLKAPLLAAAE 181
>gi|255011088|ref|ZP_05283214.1| putative LPS biosynthesis related dTDP-4-dehydrorhamnose
3,5-epimerase [Bacteroides fragilis 3_1_12]
gi|313148896|ref|ZP_07811089.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides fragilis 3_1_12]
gi|313137663|gb|EFR55023.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides fragilis 3_1_12]
Length = 180
Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats.
Identities = 71/174 (40%), Positives = 106/174 (60%), Gaps = 2/174 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V IL+ R F+D RG+F ++++ + +E + FVQDN S S G +RGLHFQ+ P
Sbjct: 8 IDGVVILEPRIFKDDRGYFFESFNQREFEEKVCKTTFVQDNESKSS-YGVLRGLHFQQAP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ+KLVR + G + D+AVDIR+ SPT+G V++E++ +N Q +IP G AHGF L
Sbjct: 67 FAQSKLVRVVKGAVLDVAVDIRKGSPTFGQHVAVELTEDNHRQFFIPRGLAHGFSVLSEA 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YK +FY+ + VAW D + I W + + +SEKD P L ++
Sbjct: 127 VVFQYKCDNFYAPHSEGAVAWDDPDLGIDWRIPADRV-ILSEKDSRHPRLKDLN 179
>gi|171184950|ref|YP_001793869.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoproteus neutrophilus
V24Sta]
gi|170934162|gb|ACB39423.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoproteus neutrophilus
V24Sta]
Length = 187
Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats.
Identities = 73/181 (40%), Positives = 107/181 (59%), Gaps = 4/181 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +++ F D RG+F++ Y G+ FVQ + S S G +RGLH+Q
Sbjct: 9 LEIPDVILIEPVVFPDQRGFFAELYKRTDFLAGGVPYDFVQVSVSMS-RRGVVRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLV + GR+ D+AVD+RR SP +G +V++E+SA+ ++IP GFAHGF LE
Sbjct: 68 KPAEQGKLVTVLRGRVLDVAVDVRRGSPWFGRYVAVELSADEPRLLWIPPGFAHGFQALE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
T +Y +T YS +H+ V W D + I WP+ D I +SEKD+ P L + ++ FE
Sbjct: 128 DGTLFMYLMTKEYSPQHERCVRWDDPEVGIPWPIGDAI---LSEKDRRCPPLREAETNFE 184
Query: 181 Y 181
Y
Sbjct: 185 Y 185
>gi|332701642|ref|ZP_08421730.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio africanus str.
Walvis Bay]
gi|332551791|gb|EGJ48835.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio africanus str.
Walvis Bay]
Length = 181
Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats.
Identities = 69/174 (39%), Positives = 98/174 (56%), Gaps = 5/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V ++K F D RG+F +T+ ++ + G+ FVQDN S S G +RGLHFQR
Sbjct: 7 DIEGVLLIKPNAFGDHRGFFLETFQAQRYGQAGIGLPFVQDNLSRSRQ-GILRGLHFQRT 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLV GR+FD+AVDIR SPT+G W + N Q+++ G AHGF +
Sbjct: 66 -YPQGKLVSVTRGRVFDVAVDIRPASPTFGKWYGAVLDDENHHQLWVAPGLAHGFCVMSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK TD+Y E + + W D I I WP+ P++S+KD P L ++
Sbjct: 125 TADFTYKCTDYYHPEDEGCLRWNDPDIGIDWPVQS---PTLSDKDAKAPSLREL 175
>gi|301632557|ref|XP_002945349.1| PREDICTED: dTDP-4-dehydrorhamnose 3,5-epimerase-like [Xenopus
(Silurana) tropicalis]
Length = 181
Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats.
Identities = 75/182 (41%), Positives = 112/182 (61%), Gaps = 8/182 (4%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +L+ + F D+RG+F ++++ K ++ G VFVQDNHS S G +RGLH+Q
Sbjct: 6 LTIPDVVLLEPKVFGDARGFFFESFNQKAFQQATGSDGVFVQDNHSRSSR-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR G ++D+AVD+R+++PT+G WV E+S N Q+++P GFAHGF+ L
Sbjct: 65 IAQP-QGKLVRVARGSVWDVAVDLRKSAPTFGQWVGAELSEENQRQLWVPPGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ + +YK TD+Y+ +H+ +AW D + I WP T PS+S KD L Q F
Sbjct: 124 SDSADFLYKTTDYYAPQHERCIAWNDAQLAIQWPYAGT--PSLSAKDAQGVSLAQA---F 178
Query: 180 EY 181
Y
Sbjct: 179 IY 180
>gi|307340809|gb|ADN43869.1| RmlC [Escherichia coli]
Length = 180
Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats.
Identities = 77/168 (45%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I + + F D RG+F ++++ K+ +E + FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVLIFEPKVFYDERGFFFESFNQKVFEEAVAHKVEFVQDNHSKSSK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFITLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK T FYS +H+ + + D++I I WP + +S KD+
Sbjct: 126 DIAEFLYKTTSFYSPKHEVCIRFNDENIGIHWPNITDNT-LISPKDKK 172
>gi|16519754|ref|NP_443874.1| dTDP-rhamnose 3,5-epimerase RmlC [Sinorhizobium fredii NGR234]
gi|2500163|sp|P55468|RMLC_RHISN RecName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; AltName:
Full=Thymidine diphospho-4-keto-rhamnose 3,5-epimerase;
AltName: Full=dTDP-4-keto-6-deoxyglucose 3,5-epimerase;
AltName: Full=dTDP-6-deoxy-D-xylo-4-hexulose
3,5-epimerase; AltName: Full=dTDP-L-rhamnose synthase
gi|2182415|gb|AAB91686.1| dTDP-rhamnose 3,5-epimerase RmlC [Sinorhizobium fredii NGR234]
Length = 195
Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats.
Identities = 89/181 (49%), Positives = 120/181 (66%), Gaps = 2/181 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V++++ RKF D RG+FS+ + K ++ VQDN S S GT+RGLHFQ
Sbjct: 14 LSIAEVKLIRPRKFGDCRGYFSEVFREKWFRKNVADVGLVQDNESLSAQIGTVRGLHFQL 73
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRC G +FD+AVD+R SPTYG WVS E+S NG Q+++P GFAHGFMTL+
Sbjct: 74 EPFAQGKLVRCTRGALFDVAVDVRVGSPTYGKWVSAELSQENGAQLWVPAGFAHGFMTLK 133
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T + YKVT YS EHD G+ W D +I I WP + T +SEKD + P L ++ F+
Sbjct: 134 ADTVISYKVTAPYSAEHDRGLKWDDPAIGINWPKMTTY--VLSEKDSSQPSLCELPVSFQ 191
Query: 181 Y 181
Y
Sbjct: 192 Y 192
>gi|325169025|ref|YP_004285771.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium multivorum
AIU301]
gi|325052900|dbj|BAJ83234.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium multivorum
AIU301]
Length = 184
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 86/180 (47%), Positives = 115/180 (63%), Gaps = 1/180 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + V+++ +F DSRGWFS+T++ L LG + FVQDNHS S GTIRGLH Q
Sbjct: 5 LVLPDVKLITPPRFADSRGWFSETWNQAKLAALGFTETFVQDNHSCSTRPGTIRGLHCQI 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVRCI G I+D+AVDIR SP +G + + E+SA NG Q++IP GF HGF TLE
Sbjct: 65 APFAQGKLVRCIRGAIWDVAVDIRHGSPGFGRFAAAELSAANGAQLWIPPGFLHGFCTLE 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+TEV+YKVT Y + GV W D + + WP+ +S+KD LP L + + F
Sbjct: 125 PDTEVVYKVTAPYDKASERGVIWNDPDLALPWPVPGDG-ALLSDKDNLLPRLAEAEPWFT 183
>gi|160425306|gb|ABX39498.1| RmlC [Aeromonas hydrophila]
Length = 183
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 74/179 (41%), Positives = 99/179 (55%), Gaps = 5/179 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ + I++ + F D RG+F +TY K G+ FVQDN S F +RGLHFQ+
Sbjct: 7 KISDLLIIEPKVFGDERGFFYETYQDARYKAAGITLDFVQDNRSR-FTQNVLRGLHFQKT 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLV GR+FD+AVD+R +SPT+G S+ ++ N +Q YIP GFAHGF L
Sbjct: 66 -KPQGKLVTVTQGRVFDVAVDLRPDSPTFGQHESVLLTGENKVQFYIPPGFAHGFCVLSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ YK TD+Y +SG+ W D + I WPL P +S KD P L QI
Sbjct: 125 TADFQYKCTDYYDPADESGLLWNDPELGIEWPL---AAPVLSPKDSVQPTLAQIRHNLV 180
>gi|259414800|ref|ZP_05738723.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Silicibacter sp. TrichCH4B]
gi|259349251|gb|EEW60998.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Silicibacter sp. TrichCH4B]
Length = 182
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 87/178 (48%), Positives = 115/178 (64%), Gaps = 4/178 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V+IL +F D RG+FS++++ + ++ G+ FVQDNHS S + GTIRGLHFQ P
Sbjct: 7 KLSGVKILTPARFGDERGFFSESWNRQRMEAHGIDLDFVQDNHSMSAEVGTIRGLHFQAP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVRC G +FD+AVD+R SPTYG WV +E++A NG Q+ +P GF HGF+T
Sbjct: 67 PHAQDKLVRCGQGALFDVAVDVRVGSPTYGDWVGVELTAENGRQLLVPKGFLHGFITRAP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
TE+IYK TD+Y+ E D V W S I W T P +SEKD L SPF
Sbjct: 127 MTEIIYKCTDYYAPECDGAVRWD--SCGIDWGF--TGQPILSEKDTAAQALADFKSPF 180
>gi|328944086|ref|ZP_08241551.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Atopobium vaginae DSM 15829]
gi|327492055|gb|EGF23829.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Atopobium vaginae DSM 15829]
Length = 212
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 77/184 (41%), Positives = 104/184 (56%), Gaps = 8/184 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ + I+ T+ F D RG+F +TY + G+ FVQDNHS S G +RGLHFQ
Sbjct: 31 KVDGLFIINTKIFGDERGFFMETYKEPDFIQAGITTKFVQDNHSKSCR-GVLRGLHFQIH 89
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q+KLVR + GR+FD+AVD+R++S TYG W + +S +N Q +IP GFAHGF+ L
Sbjct: 90 -HPQSKLVRVVKGRVFDVAVDLRKDSATYGQWEGVILSEDNHTQFFIPQGFAHGFLVLSD 148
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL------DTILPSVSEKDQNLPFLNQI 175
E YK D Y + G+ W D I I WP L D +SEKD+ PFL
Sbjct: 149 EAEFCYKCDDIYHPGDEGGIMWNDPDIAIEWPALSGDTAFDPSELILSEKDKTHPFLRDS 208
Query: 176 DSPF 179
F
Sbjct: 209 KVSF 212
>gi|229078512|ref|ZP_04211072.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock4-2]
gi|228704828|gb|EEL57254.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock4-2]
Length = 181
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 86/178 (48%), Positives = 123/178 (69%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N V++L+ R F D RG+FS++Y+ ++L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDVKLLEPRLFGDERGFFSESYNKQVLETLGITYSFVQDNVSYSAKAGTIRGLHFQKK 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R+ SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKKSPTFKQWKGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS EHDSG+ W+DK + I WP+ D P +S+KDQ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSAEHDSGLLWEDKDLAIPWPVTD---PILSDKDQILPLLEEYEDSF 181
>gi|257061453|ref|YP_003139341.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 8802]
gi|256591619|gb|ACV02506.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 8802]
Length = 181
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 70/176 (39%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I++ F D RG+F +++++K E G+ FVQDNHS S +RGLH+Q
Sbjct: 7 KIPDVMIIEPNVFGDDRGFFYESFNAKKFAEETGINPNFVQDNHSKSGK-NVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G + DIAVDIR++SP++G WV ++ N Q ++P GFAHGF+ L
Sbjct: 66 QQP-QGKLVRVVVGEVLDIAVDIRKSSPSFGQWVGCILNTENKRQFWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ +++ + W D I+I W + D P +S+KDQ L +
Sbjct: 125 DVAEFLYKTTDYYAPQYERSILWNDPDINIDWQITDE--PILSKKDQLASRLKDAE 178
>gi|291568776|dbj|BAI91048.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Arthrospira platensis
NIES-39]
Length = 182
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 112/176 (63%), Gaps = 4/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V +++ + F D RG+F ++++ K+ E G+ FVQDNHS S G +RGLH+Q
Sbjct: 7 KIPDVFLVEPKVFGDHRGFFFESFNQKVFTEKTGVTTDFVQDNHSRSSQ-GVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KL+R + G +FD+AVDIR++SPT+G WV +SA N Q++IP GFAHGF+
Sbjct: 66 Q-QTQGKLLRVVLGEVFDVAVDIRKSSPTFGQWVGYYLSAENKQQLWIPPGFAHGFLVTS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EV+YK TD+Y+ +++ + W D I I WPL +++ P +SEKD+N L +
Sbjct: 125 PVAEVLYKTTDYYAPQYERSLLWNDPDIAIEWPL-ESLEPKLSEKDKNAHTLTNAE 179
>gi|254416320|ref|ZP_05030074.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Microcoleus chthonoplastes
PCC 7420]
gi|196177002|gb|EDX72012.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Microcoleus chthonoplastes
PCC 7420]
Length = 181
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 79/176 (44%), Positives = 105/176 (59%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I++ R F D RG+F ++Y+ K E + FVQDNHS S +RGLH+Q
Sbjct: 7 KIPDVVIIEPRVFGDERGFFLESYNQKAFTEKANIAANFVQDNHSRSVK-NVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR I G + D+AVDIR++SPT+G WVS +SA N QI+IP GFAHGF+ +
Sbjct: 66 QQP-QGKLVRAIVGTVLDVAVDIRQSSPTFGQWVSCLLSAENKRQIWIPPGFAHGFLVVS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EVIYK TD+Y+ +H+ + W D + I W L T P +S KDQ L +
Sbjct: 125 EVAEVIYKTTDYYAPQHERTLLWNDPDLGIDWDL--TTEPILSAKDQAGQPLKTAE 178
>gi|300768302|ref|ZP_07078206.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|300494090|gb|EFK29254.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
Length = 193
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 76/182 (41%), Positives = 109/182 (59%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ F D RG+F++TYS + KE G+ F+QDN S S + G +RGLHFQR
Sbjct: 10 KLQDVKIIEPAVFGDKRGFFTETYSDRDFKEAGIDFDFIQDNQSLSAEAGVLRGLHFQRG 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ VD+R SPTYG W IS +N Q+ +P GFAHGF+TL
Sbjct: 70 KAAQTKLIRVVTGAVLDVIVDVRAGSPTYGEWEGYIISESNHRQLLVPRGFAHGFVTLTD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID--SPF 179
N +YK ++Y+ E D G+ + DK ++I WP+ D SEKD + + +PF
Sbjct: 130 NVNFLYKCDNYYNAEADGGITFMDKDLNINWPI-DYDQAITSEKDAKQQTFKEFEQNNPF 188
Query: 180 EY 181
Y
Sbjct: 189 AY 190
>gi|317487717|ref|ZP_07946313.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eggerthella sp. 1_3_56FAA]
gi|325830483|ref|ZP_08163938.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eggerthella sp. HGA1]
gi|316913174|gb|EFV34687.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eggerthella sp. 1_3_56FAA]
gi|325487465|gb|EGC89905.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eggerthella sp. HGA1]
Length = 190
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 71/174 (40%), Positives = 99/174 (56%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V ++ + D RG+F +TY G+ FVQDN S S G +RGLHFQ
Sbjct: 18 SIEGVLVVDVTAYGDERGYFVETYKRPDFVAGGIDCEFVQDNQSSSVK-GVLRGLHFQIE 76
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q+KLVR ++G +FD+AVD+R +SPTYG W +SA N Q ++P GFAHGF+ L
Sbjct: 77 -HPQSKLVRVVSGEVFDVAVDLRPDSPTYGKWEGAVLSAENRRQFFVPRGFAHGFLVLSD 135
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YK D Y + G+ W D I I WP+ + + +SEKD+ P L +
Sbjct: 136 IAEFCYKCDDVYHPNDEGGLMWNDPEIGIEWPISEGMELVLSEKDKAHPGLKDL 189
>gi|12232611|gb|AAG49406.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Aggregatibacter
actinomycetemcomitans]
Length = 180
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 71/174 (40%), Positives = 104/174 (59%), Gaps = 4/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++L+ + F D RG+F +T+ + ++ FVQ+NHS S G +RGLH+Q
Sbjct: 7 KIPDVKLLEPQVFGDERGFFMETFRDEWFRKNVADRTFVQENHSKSIK-GVLRGLHYQTE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR I+G +FD+AVD+R NS T+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 N-TQGKLVRVISGAVFDVAVDMRGNSLTFGQWVGEILSAENKHQLWVPEGFAHGFYVLTD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YK TD+Y+ + + ++W D+++ I WPL PS+S KD L +
Sbjct: 125 EAEFTYKCTDYYNPKAEHSLSWNDETVGIEWPLYGK--PSLSAKDLGGKMLAEA 176
>gi|330806983|ref|YP_004351445.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327375091|gb|AEA66441.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 181
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 72/175 (41%), Positives = 107/175 (61%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V +++ + F D RG+F ++++++ E G FVQDNHS S G +RGLH+Q
Sbjct: 8 LPDVLVIEPKVFGDDRGFFYESFNARAFAEATGCTLQFVQDNHSRS-TRGVLRGLHYQIE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVR AG + D+AVDIRR+SPT+G W S+ +SA N Q+++P GFAHGF+ L
Sbjct: 67 -QAQGKLVRVTAGEVLDVAVDIRRSSPTFGQWASVRLSAQNHRQMWVPPGFAHGFVVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + +YK TD+Y+ + + W D + I W P +S KDQN L++ D
Sbjct: 126 SADFLYKTTDYYAPSAERCIRWDDPQLAIDWEFEGA--PILSAKDQNGKALHEAD 178
>gi|86160705|ref|YP_467490.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anaeromyxobacter dehalogenans
2CP-C]
gi|85777216|gb|ABC84053.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anaeromyxobacter dehalogenans
2CP-C]
Length = 188
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 68/174 (39%), Positives = 101/174 (58%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ + +++ R F D+RG+F ++++ + +G FVQDNHS S +RGLH+Q
Sbjct: 8 LPGLLVVEPRVFGDARGFFFESFNQRAFDAAVGRHVEFVQDNHSLS-TRNVLRGLHYQL- 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLVR G +FD+AVD+RR SPT+G W +SA + Q++IP GFAHGF+ L
Sbjct: 66 PNPQGKLVRVTRGEVFDVAVDLRRGSPTFGRWAGETLSAEDKRQLWIPEGFAHGFLVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK+TD++ EH+ + W D ++ I WP P VS KD +
Sbjct: 126 EAEFVYKITDYWHPEHEHCIRWDDPALGIDWP-TGGAPPIVSAKDAGGRSFREA 178
>gi|288559367|ref|YP_003422853.1| dTDP-4-dehydrorhamnose 3,5- epimerase RfbC1 [Methanobrevibacter
ruminantium M1]
gi|288542077|gb|ADC45961.1| dTDP-4-dehydrorhamnose 3,5- epimerase RfbC1 [Methanobrevibacter
ruminantium M1]
Length = 192
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 78/183 (42%), Positives = 104/183 (56%), Gaps = 4/183 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V ++ FED RG+F +TY+ K G+ FVQDN S S G +RGLHFQ
Sbjct: 10 EIEGVFTVEPTVFEDERGYFMETYNENDFKAEGIDLTFVQDNQSKSSK-GVLRGLHFQYT 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR I G +FD+ VD+R++SPTYG W+ +S N Q++IP GFAHGF+ L
Sbjct: 69 QP-QGKLVRVIKGEVFDVGVDLRKDSPTYGKWMGEILSEENKKQLFIPKGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD--TILPSVSEKDQNLPFLNQIDSPF 179
E +YK TDFY + + G+ W D I I WPL D +SEKD+ L + + F
Sbjct: 128 EAEFVYKCTDFYKGDDEGGIQWNDPDIGIEWPLGDLKEEDLILSEKDKLLKPMKDTPTDF 187
Query: 180 EYD 182
+
Sbjct: 188 YME 190
>gi|153854428|ref|ZP_01995706.1| hypothetical protein DORLON_01701 [Dorea longicatena DSM 13814]
gi|149752954|gb|EDM62885.1| hypothetical protein DORLON_01701 [Dorea longicatena DSM 13814]
Length = 202
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 78/189 (41%), Positives = 104/189 (55%), Gaps = 18/189 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + +++ D+RG+F +TY+ K ++E GL FVQDN S S G +RGLHFQ+
Sbjct: 12 GIQGLCVIEPTVHGDARGYFMETYNQKDMEEAGLTMQFVQDNQSCS-TKGVLRGLHFQKE 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R +S TYG W +E++ N Q YIP GFAHGF+ L
Sbjct: 71 -FPQGKLVRVVKGSVFDVAVDLRSDSETYGKWFGVELTEENKKQFYIPEGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YK TDFY + G+AW D I I WP L D ++SEK
Sbjct: 130 IAEFCYKCTDFYHPGDEGGLAWNDPEIGIEWPTLTGEYKGTASGEGYALEDGTALNLSEK 189
Query: 166 DQNLPFLNQ 174
DQ L
Sbjct: 190 DQLWVGLKD 198
>gi|284051016|ref|ZP_06381226.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Arthrospira platensis str.
Paraca]
Length = 182
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 112/176 (63%), Gaps = 4/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V +++ + F D RG+F ++++ K+ E G+ FVQDNHS S G +RGLH+Q
Sbjct: 7 KIPDVFLVEPKVFGDHRGFFFESFNQKVFTEKTGVTTDFVQDNHSRSSQ-GVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KL+R + G +FD+AVDIR++SPT+G WV +SA N Q++IP GFAHGF+
Sbjct: 66 Q-QTQGKLLRVVLGEVFDVAVDIRKSSPTFGQWVGYYLSAENKQQLWIPPGFAHGFLVTS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EV+YK TD+Y+ +++ + W D I I WPL +++ P +SEKD+N L +
Sbjct: 125 PVAEVLYKTTDYYAPQYERSLLWNDPDIAIQWPL-ESLEPKLSEKDKNAHTLTNAE 179
>gi|161525767|ref|YP_001580779.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans ATCC
17616]
gi|189349511|ref|YP_001945139.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans ATCC
17616]
gi|160343196|gb|ABX16282.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans ATCC
17616]
gi|189333533|dbj|BAG42603.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans ATCC
17616]
Length = 183
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F ++++ + E FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPKVFGDARGYFYESFNGREFAEQVEPGVEFVQDNHSRSAK-GVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVDIRR+SP +G WV + +SA+N Q+++P GFAHGF+ L
Sbjct: 69 -HAQGKLVRVVEGEVFDVAVDIRRSSPNFGKWVGVTLSADNHRQLWVPPGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD++ EH+ + W D I I WP+ P ++ KD L + +
Sbjct: 128 AAQFLYKTTDYWYPEHERSIVWNDPDIGIEWPIE--FEPLLAAKDAAGKRLAEAE 180
>gi|315499263|ref|YP_004088067.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Asticcacaulis excentricus CB
48]
gi|315417275|gb|ADU13916.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Asticcacaulis excentricus CB
48]
Length = 180
Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats.
Identities = 84/172 (48%), Positives = 112/172 (65%), Gaps = 1/172 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI + +L +KF D+RG+F + + + +E FVQDN S S GTIRGLH+Q+
Sbjct: 7 NIEGLALLTPKKFGDNRGYFMEAFKAAWFRESVADVTFVQDNQSLSGQVGTIRGLHYQKL 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLVRC+ G IFD+AVDIR S T+G WV ++ +N LQ++IP GFAHGF TLE
Sbjct: 67 PCGQGKLVRCLRGAIFDVAVDIRPESSTFGQWVGETLTPDNALQLWIPEGFAHGFCTLEP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+TEV YKVT YS HD+G+A+ D I I WP+ D +S+KD+ P L+
Sbjct: 127 DTEVFYKVTSPYSPTHDAGLAFDDPEIGIEWPI-DLAAAVLSDKDKVQPKLS 177
>gi|291521043|emb|CBK79336.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coprococcus catus GD/7]
Length = 199
Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats.
Identities = 76/189 (40%), Positives = 101/189 (53%), Gaps = 18/189 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + +++ D+RG+F +TYS + ++E G+ FVQDN S S G +RGLHFQ+
Sbjct: 12 GIEGLCVIEPAVHGDARGYFMETYSQRDMEENGIHIQFVQDNQSMS-TKGVLRGLHFQK- 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR I G +FD+AVD+R S TYG W +E++ N Q IP GFAHGF+ L
Sbjct: 70 NYPQTKLVRVIKGSVFDVAVDLRSGSETYGKWYGIELTEENKKQFLIPRGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YK DFY + G+AW D I I WP L D ++S+K
Sbjct: 130 TAEFCYKCDDFYHPNDEGGMAWNDPEIGIEWPKVKGEYRGNADAEGYTLEDGTALNLSDK 189
Query: 166 DQNLPFLNQ 174
DQ L
Sbjct: 190 DQKWLGLKD 198
>gi|262037148|ref|ZP_06010640.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptotrichia goodfellowii
F0264]
gi|261748836|gb|EEY36183.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptotrichia goodfellowii
F0264]
Length = 190
Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats.
Identities = 84/182 (46%), Positives = 116/182 (63%), Gaps = 6/182 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ + F DSRG+F +TY+ K +ELGL FVQDNHS S G +RGLHFQ
Sbjct: 11 IKDLVIIEPKVFGDSRGFFMETYNQKSFEELGLTMNFVQDNHSKS-KKGVLRGLHFQTK- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR I GR+FD+AVD+R+ S TYG W +E+S N L Y+P FAHGF+TL+ +
Sbjct: 69 HTQGKLVRVIKGRVFDVAVDLRKESETYGQWYGVELSEENKLMFYVPERFAHGFLTLDED 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQIDSP 178
TE +Y+ TD Y+ E+DSG+ W DK+++I W + ++SEKDQ +
Sbjct: 129 TEFVYRCTDLYAPEYDSGILWNDKTLNIDWKFEEFGINPEELTISEKDQKQQNFQPEKNY 188
Query: 179 FE 180
FE
Sbjct: 189 FE 190
>gi|261210463|ref|ZP_05924757.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio sp. RC341]
gi|260840521|gb|EEX67087.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio sp. RC341]
Length = 181
Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats.
Identities = 73/169 (43%), Positives = 106/169 (62%), Gaps = 6/169 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T+S K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPTVFGDERGFFMETWSQKRFEELVTGKPTTFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G ++D+AVD+R SPT+G W+ + +S+ N Q+++P GFAHGF L
Sbjct: 66 TEN-TQGKLVRVVSGEVYDVAVDVRAESPTFGQWIGVHLSSENKRQLWVPEGFAHGFYVL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK TD+Y+ + + W DK + I WP+ P +S+KDQN
Sbjct: 125 SEEAEFVYKCTDYYNPSAEVSIRWDDKELSIEWPIDTG--PYLSDKDQN 171
>gi|224369621|ref|YP_002603785.1| RfbC2 [Desulfobacterium autotrophicum HRM2]
gi|223692338|gb|ACN15621.1| RfbC2 [Desulfobacterium autotrophicum HRM2]
Length = 182
Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats.
Identities = 70/176 (39%), Positives = 106/176 (60%), Gaps = 2/176 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NI V +++ + F D RG+F +T+ K+ + FVQDNHS S +RGLH+Q
Sbjct: 6 LNIPDVILMEPQVFGDHRGFFMETFRDDEFKQKVVHTTFVQDNHSKSSQ-NILRGLHYQI 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLV+ +G++FD+AVDIR++SP +G W +SA N +++P GFAHGF L
Sbjct: 65 KQP-QGKLVQVTSGKVFDVAVDIRKSSPFFGKWSGATLSAENKKMLWVPPGFAHGFYVLS 123
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E YK TD+Y+ EH+ + W D SI I WP++ P +S+KD + L++ +
Sbjct: 124 DEAEFTYKCTDYYAPEHERSILWNDPSIAIDWPIIHGASPILSQKDIDGVTLDKAE 179
>gi|298384767|ref|ZP_06994327.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 1_1_14]
gi|298263046|gb|EFI05910.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 1_1_14]
Length = 184
Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats.
Identities = 76/178 (42%), Positives = 107/178 (60%), Gaps = 2/178 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F+D RG+F +++S + E + FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IEGVFIIEPRLFKDDRGYFFESFSQREFNEKVRKVNFVQDNESKSS-YGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLVR I G + D+AVDIR+ SPT+G +VS+E++ +N Q +IP GFAHGF L
Sbjct: 67 YAQSKLVRVIKGAVLDVAVDIRKGSPTFGKYVSVELTEDNHRQFFIPRGFAHGFSVLTDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
YK +FY+ + + +AW D + I W + +SEKD+ L FE
Sbjct: 127 VIFQYKCDNFYAPQSEGALAWDDPDLGIDWRVP-ANEIVLSEKDKYHERLRDASWLFE 183
>gi|218681703|ref|ZP_03529504.1| dTDP-4-dehydrorhamnose 3,5-epimerase protein [Rhizobium etli CIAT
894]
Length = 192
Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats.
Identities = 86/181 (47%), Positives = 116/181 (64%), Gaps = 1/181 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + + +F D RG+FS+ + +E FVQDN S S GT+RGLHFQ P
Sbjct: 8 IEGIVAITPPRFGDHRGYFSEVFKDAWFRENVADVTFVQDNESLSAVAGTVRGLHFQIGP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVRC+AGRI D+ VDIR SP++G W+S E+S G+Q++IP GFAHGF+T+E N
Sbjct: 68 FAQGKLVRCLAGRIMDVVVDIRVGSPSFGKWLSQELSPETGMQLWIPAGFAHGFVTIEPN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
+ + YKVT YS +HD G+AW D +I I WP + + S S+KD+ LP L + S F Y
Sbjct: 128 SVISYKVTAPYSPQHDRGIAWNDPAIGIRWPFDEKDMVS-SDKDKTLPRLADLPSHFSYS 186
Query: 183 G 183
Sbjct: 187 A 187
>gi|126660836|ref|ZP_01731930.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. CCY0110]
gi|126617887|gb|EAZ88662.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. CCY0110]
Length = 181
Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I++ R F D RG+F ++Y+ K E G++ FVQDNHS S +RGLH+Q
Sbjct: 7 KIPDVVIIEPRVFGDDRGFFYESYNQKAFTEATGIERNFVQDNHSRS-QKNVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G + D+AVDIR++S T+G WVS ++A N Q ++P GFAHGF+ L
Sbjct: 66 QQP-QGKLVRVVVGEVLDVAVDIRKSSSTFGQWVSCLLNAENKRQFWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK T++Y+ ++ + W D + I W L D P +S+KDQ + +
Sbjct: 125 DVAEFLYKTTNYYAPPYERSILWNDPDLSIDWQLKDE--PKLSKKDQEGSSFKEAE 178
>gi|239993213|ref|ZP_04713737.1| dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase [Alteromonas macleodii
ATCC 27126]
Length = 181
Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats.
Identities = 73/177 (41%), Positives = 113/177 (63%), Gaps = 4/177 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V+I++ + F D RG+F +T+ + K+ FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPKVFGDERGFFLETFRTDWFKKECADVDFVQDNHSKSSQ-GILRGLHYQME 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR ++G ++D+AVD+R++SPTYG WV + +SA N Q+++P GFAHGF
Sbjct: 66 -QTQGKLVRVVSGEVYDVAVDMRKDSPTYGKWVGVTLSAENKRQLWVPAGFAHGFYVTSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
+ E +YK TD+Y E + V + D +++I WPL++ PS+S KD+ L +++P
Sbjct: 125 SAEFVYKCTDYYHPESEISVKYDDPTLNIDWPLVNGEKPSLSGKDEAG--LAFVNAP 179
>gi|257468057|ref|ZP_05632153.1| dTDP-4-dehydrorhamnose reductase [Fusobacterium ulcerans ATCC
49185]
gi|317062343|ref|ZP_07926828.1| dTDP-4-dehydrorhamnose reductase [Fusobacterium ulcerans ATCC
49185]
gi|313688019|gb|EFS24854.1| dTDP-4-dehydrorhamnose reductase [Fusobacterium ulcerans ATCC
49185]
Length = 475
Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats.
Identities = 79/193 (40%), Positives = 115/193 (59%), Gaps = 6/193 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N+ + I++ FEDSRG+F ++Y+ +++G+ F+QDNHS S GT+RGLHFQ
Sbjct: 10 NLQGIYIIEPLVFEDSRGFFLESYNKAEFEKIGITTNFIQDNHSKS-KKGTLRGLHFQIK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
++QAKL+R I G+I DI VDIR+ S TYG W E+SA N +YI GFAHGF+ LE
Sbjct: 69 -HSQAKLIRVIKGKILDIVVDIRKGSSTYGKWCGTELSAENRKMLYIAKGFAHGFLALED 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL----PSVSEKDQNLPFLNQIDS 177
+TE+ YK ++Y+ +DSG+ W DK I I W L +SEKD+ +
Sbjct: 128 DTEIEYKCDEYYAPHYDSGIMWNDKDIAIDWNFEKNGLKEENIILSEKDKKHQSFKEYTE 187
Query: 178 PFEYDGLPLLSLN 190
+ + + L +
Sbjct: 188 KYSGENVLLTGAD 200
>gi|325527144|gb|EGD04547.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. TJI49]
Length = 183
Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats.
Identities = 69/175 (39%), Positives = 109/175 (62%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F ++++ + E FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPKVFGDARGYFYESFNGREFAEHVEPGVEFVQDNHSRSAK-GVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVDIR++SP +G WV + +SA+N Q+++P GFAHGF+ L
Sbjct: 69 -HAQGKLVRVVEGEVFDVAVDIRKHSPNFGKWVGVTLSADNHRQLWVPPGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD++ EH+ + W D I I WP+ P ++ KD L++ +
Sbjct: 128 AAQFLYKTTDYWYPEHERSIVWNDPEIGIEWPI--DFEPLLAAKDAAGKRLSEAE 180
>gi|13650067|gb|AAK37550.1|AF349575_1 putative dTDP-rhamnose-3,5-epimerase [Azospirillum brasilense]
gi|46241701|gb|AAS83086.1| putative dTDP-rhamnose-3,5-epimerase [Azospirillum brasilense]
Length = 187
Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats.
Identities = 79/179 (44%), Positives = 116/179 (64%), Gaps = 2/179 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ VR++ ++F D+RG+F +T++ + GL+ +VQDN S S GT+RG+H+Q
Sbjct: 7 SLPDVRLVVPKRFGDARGYFVETWNEQAFALNGLERRWVQDNQSLSATPGTVRGMHYQLA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KL+R +AGRI D+ VDIRR SPT+G V++E++A+ Q++IP GFAHGF TLE
Sbjct: 67 PFAQTKLIRVLAGRILDVVVDIRRGSPTFGRHVAVELTADGLEQLFIPAGFAHGFCTLEP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NT V YKV YS E + + W D ++ I WP + SVS+KD P L + F+
Sbjct: 127 NTAVAYKVDAPYSRECERAILWNDPALGIDWPAMAGA--SVSDKDAVAPRLAKATDLFD 183
>gi|327188681|gb|EGE55884.1| dTDP-4-dehydrorhamnose 3,5-epimerase protein [Rhizobium etli
CNPAF512]
Length = 192
Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats.
Identities = 87/181 (48%), Positives = 115/181 (63%), Gaps = 1/181 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + + +F D RG+FS+ + +E FVQDN S S GT+RGLHFQ P
Sbjct: 8 IEGIVAITPPRFGDHRGYFSEVFKDAWFRENVADVTFVQDNESLSAQAGTVRGLHFQIAP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVRC+AGRI D+ VDIR SP+YG W+S E+S + G Q++IP GFAHGF T+E N
Sbjct: 68 FAQGKLVRCLAGRIMDVVVDIRVGSPSYGKWLSQELSPDTGKQLWIPAGFAHGFATIEPN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
+ + YKVT YS +HD G+AW D +I I WP + + S S+KD+ LP L + S F Y
Sbjct: 128 SVISYKVTAPYSPQHDRGIAWNDPAIGIRWPFDERDMVS-SDKDKTLPRLADLPSHFSYS 186
Query: 183 G 183
Sbjct: 187 A 187
>gi|9957832|gb|AAG09512.1|AF279618_4 dTDP-6-deoxy-D-glucose-3,5-epimerase [Salmonella enterica]
Length = 182
Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats.
Identities = 78/176 (44%), Positives = 113/176 (64%), Gaps = 2/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V IL+ F D RG+F ++++ ++ + L ++ FVQDNHS S +RGLH+Q
Sbjct: 7 EIPDVFILEPLVFVDERGFFMESFNHRVFETLLDIKVNFVQDNHSKS-TKNVVRGLHYQT 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRCI+G ++D+AVD+R S TYGCWV +E+SA N Q++IP GFAHGF+TL
Sbjct: 66 EPYAQGKLVRCISGAVYDVAVDLRSTSQTYGCWVGVELSALNMRQLWIPEGFAHGFLTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
N E +YK T++Y+ E + + + D +DI WP+ + VS+KD+ I
Sbjct: 126 DNVEFLYKTTNYYNKESERCIRYNDPDLDIIWPISNKDNIIVSDKDKKGILFRDIK 181
>gi|257126937|ref|YP_003165051.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptotrichia buccalis
C-1013-b]
gi|257050876|gb|ACV40060.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptotrichia buccalis
C-1013-b]
Length = 190
Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats.
Identities = 81/182 (44%), Positives = 116/182 (63%), Gaps = 6/182 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ + F D RG+F +TY+ K +ELGL FVQDNHS S G +RGLHFQ
Sbjct: 11 IKDLVIIEPKVFGDERGFFMETYNQKSFEELGLTMSFVQDNHSKS-KKGVLRGLHFQTK- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR I G ++D+AVD+R+ S T+G W ++++SA N L Y+P GFAHGF+TLE
Sbjct: 69 HTQGKLVRVIKGSVYDVAVDLRKGSDTFGKWYAIKLSAENKLMFYVPEGFAHGFLTLEDE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQIDSP 178
TE +Y+ TD Y+ E+DSG+ W D++I+I W + ++SEKD+ +
Sbjct: 129 TEFVYRCTDLYAPEYDSGLLWNDETINIDWKFEEFGINHDELTISEKDKAQQKFDLNKDY 188
Query: 179 FE 180
FE
Sbjct: 189 FE 190
>gi|170743901|ref|YP_001772556.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium sp. 4-46]
gi|168198175|gb|ACA20122.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium sp. 4-46]
Length = 184
Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats.
Identities = 80/179 (44%), Positives = 116/179 (64%), Gaps = 2/179 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V+++ + D+RGWFS+TY + LL + G+ D+F+QDN SFS GT+RG+HFQ
Sbjct: 7 SIPDVKLVVPARHGDARGWFSETYRADLLAQAGITDLFIQDNQSFSAQVGTVRGIHFQTH 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVR ++G I D+AVD+RR SP+YG V++ + A NG Q+Y+P GF H F TLE
Sbjct: 67 PHAQGKLVRVVSGAILDVAVDLRRASPSYGRHVAVRLDAENGHQLYVPVGFGHAFCTLEP 126
Query: 122 NTEVIYKVT-DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T + YKV+ +YS HD + W D + I WP+ +S KD+ P L + + F
Sbjct: 127 DTAIAYKVSGGYYSPAHDGALLWNDPDLGIDWPVSPEA-AILSAKDKAAPRLADLPAHF 184
>gi|242278516|ref|YP_002990645.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio salexigens DSM
2638]
gi|242121410|gb|ACS79106.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio salexigens DSM
2638]
Length = 183
Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats.
Identities = 77/180 (42%), Positives = 111/180 (61%), Gaps = 3/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ +++ + F D RG+F ++++ + E GL FVQDNH++S G IRGLH Q P
Sbjct: 7 EFPGLVVIEPKVFRDRRGFFLESFNKNVFAENGLPTDFVQDNHAYSSGLGVIRGLHLQMP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQAKLV G + D+ VD+R+ SPTY +E+SA N L+++IP GFAHG+ TL
Sbjct: 67 PHAQAKLVWVTRGAVNDVVVDLRKGSPTYRRSFKIELSAENFLRLFIPKGFAHGYETLTE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
E +YKV Y+ ++G+ W D +DI W + P +S+KD LP L Q DSPFE+
Sbjct: 127 ENEFMYKVDSGYAPGSEAGIRWDDPELDIDWKTKN---PVLSDKDLELPLLAQFDSPFEF 183
>gi|217421153|ref|ZP_03452658.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
576]
gi|217396565|gb|EEC36582.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
576]
Length = 183
Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats.
Identities = 69/175 (39%), Positives = 111/175 (63%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F ++++++ E F+QDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPKVFGDARGFFFESFNAREFAEQVDAGVEFIQDNHSRSAK-GVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVDIR++SP +G WV + +SA+N Q+++P GFAHGF+ L
Sbjct: 69 -HAQGKLVRVVEGEVFDVAVDIRKSSPNFGKWVGVVLSADNHRQLWVPPGFAHGFVVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD++ E + +AW D +I I WP+ D P ++ KD L + +
Sbjct: 128 AAQFLYKTTDYWFPEFERSIAWNDPAIGIDWPIDDE--PLLAAKDAAGKLLAEAE 180
>gi|329912057|ref|ZP_08275652.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oxalobacteraceae bacterium
IMCC9480]
gi|327545743|gb|EGF30878.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oxalobacteraceae bacterium
IMCC9480]
Length = 181
Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats.
Identities = 76/176 (43%), Positives = 110/176 (62%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I++ F D RG+F ++++ + EL GL FVQDNHS S +RGLH+Q
Sbjct: 7 EIPDVLIIEPTVFGDERGFFFESFNQRRFFELTGLSVDFVQDNHSQSAK-NVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G +FD+AVDIRR+SPT+G +V +E+SANN ++IP GFAHGF+ +
Sbjct: 66 QQP-QGKLVRVVQGVVFDVAVDIRRSSPTFGKYVGVELSANNKRMVWIPPGFAHGFVVMS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD++ + +AW D SI I WP+ +P++SEKD+ L+ +
Sbjct: 125 EVAEFLYKTTDYWVPGFERSIAWNDPSIGIDWPIEG--VPTLSEKDRLSKLLSDAE 178
>gi|220919523|ref|YP_002494827.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anaeromyxobacter dehalogenans
2CP-1]
gi|219957377|gb|ACL67761.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anaeromyxobacter dehalogenans
2CP-1]
Length = 188
Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats.
Identities = 70/174 (40%), Positives = 102/174 (58%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ + +++ R F D+RG+F ++++ K +G FVQDNHS S G +RGLH+Q
Sbjct: 8 LPGLLVVEPRVFGDARGYFFESFNQKAFDAAVGRHVEFVQDNHSLSAR-GVLRGLHYQL- 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLVR G +FD+AVD+RR SPT+G W +SA N Q++IP GFAHGF+
Sbjct: 66 PNPQGKLVRVTRGEVFDVAVDLRRGSPTFGRWAGEILSAENKRQLWIPEGFAHGFLVRSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK+TD++ EH+ + W D ++ I WP + P VS KD +
Sbjct: 126 EAEFVYKITDYWHPEHEHCIRWDDPALGIDWP-TGGVRPLVSAKDAAGRPFREA 178
>gi|303248974|ref|ZP_07335220.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio fructosovorans
JJ]
gi|302489623|gb|EFL49561.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio fructosovorans
JJ]
Length = 193
Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats.
Identities = 81/189 (42%), Positives = 111/189 (58%), Gaps = 3/189 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + +K + F D+RG+F +TYS GL FVQDNH+ S G +RGLHFQRP
Sbjct: 7 GIPGLVTIKPKVFGDNRGFFLETYSRAAFAAAGLDYDFVQDNHARSGPKGVLRGLHFQRP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P QAKLV + G + D+ VD+R SPTY W +E++ +N +++ +P GFAHG++TL
Sbjct: 67 PSTQAKLVWVVRGAVLDVVVDLRVGSPTYKKWFGIELTEDNFMRLMVPRGFAHGYVTLTE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N E +YKV Y D+G+AW D I I WP+ + P +SEKD P L + SPF Y
Sbjct: 127 NAEFMYKVDAPYVPADDAGIAWNDPEIGIDWPVAE---PILSEKDARQPTLAALGSPFIY 183
Query: 182 DGLPLLSLN 190
G +
Sbjct: 184 QGHDTSGED 192
>gi|209526055|ref|ZP_03274588.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Arthrospira maxima CS-328]
gi|209493581|gb|EDZ93903.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Arthrospira maxima CS-328]
Length = 182
Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 112/176 (63%), Gaps = 4/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V +++ + F D RG+F ++++ K+ E G+ FVQDNHS S G +RGLH+Q
Sbjct: 7 KIPDVFLVEPKVFGDDRGFFFESFNQKVFTEKTGVTTDFVQDNHSRSSQ-GVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KL+R + G +FD+AVDIR++SPT+G WV +SA N Q++IP GFAHGF+
Sbjct: 66 Q-QTQGKLLRVVLGEVFDVAVDIRKSSPTFGQWVGYYLSAENKQQLWIPPGFAHGFLVTS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EV+YK TD+Y+ +++ + W D I I WPL +++ P +SEKD+N L +
Sbjct: 125 PVAEVLYKTTDYYAPQYERSLLWNDPDIAIEWPL-ESLEPKLSEKDKNGNTLTNAE 179
>gi|50982342|gb|AAT91795.1| putative dTDP-L-rhamnose processing protein [Yersinia
enterocolitica]
Length = 182
Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats.
Identities = 80/178 (44%), Positives = 112/178 (62%), Gaps = 6/178 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
NI V+I++ F D RG+F + + + +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 NIPDVKIIEPTVFGDDRGFFMEIWQKQKFEELVTGYPCDFVQDNHSKSSK-GILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR I+G ++D+AVDIRR+S T+G WV + +SA N Q++IP GFAHGF
Sbjct: 66 SVN-TQGKLVRVISGEVYDVAVDIRRDSETFGQWVGIYLSAENRRQLWIPKGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E +YK TD+Y+ + ++W D S+DI WPL+D P +S+KDQN L++ S
Sbjct: 125 SPVAEFVYKCTDYYNPAFEYSISWNDPSLDINWPLIDP--PILSDKDQNGLSLDKFIS 180
>gi|224535678|ref|ZP_03676217.1| hypothetical protein BACCELL_00542 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522716|gb|EEF91821.1| hypothetical protein BACCELL_00542 [Bacteroides cellulosilyticus
DSM 14838]
Length = 189
Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats.
Identities = 75/179 (41%), Positives = 110/179 (61%), Gaps = 2/179 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F+D RG F ++++ K +E + FVQDN S S G IRGLHFQ+ P
Sbjct: 8 IEGVVIIEPRLFKDGRGCFFESFNQKEFEEKVCKTTFVQDNESKSS-YGVIRGLHFQKTP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ+KLVR + G + D+AVDIR+ SPT+G V++E++ NN Q++IP GFAHGF L
Sbjct: 67 FAQSKLVRVVKGTVLDVAVDIRKGSPTFGQHVAVELTENNYRQLFIPRGFAHGFSVLSEE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +FY + + +AW D ++I W + + +SEKD+ P L + F+Y
Sbjct: 127 VVFQYKCDNFYVPQSECALAWDDLELNIDWRIPAENV-ILSEKDRAHPNLRNSEWLFDY 184
>gi|121606377|ref|YP_983706.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Polaromonas naphthalenivorans
CJ2]
gi|120595346|gb|ABM38785.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Polaromonas naphthalenivorans
CJ2]
Length = 181
Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 107/176 (60%), Gaps = 5/176 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ R F D+RG+F ++++ K + G FVQDNHS S G +RGLH+Q
Sbjct: 8 IADVLIIEPRVFGDARGFFYESFNQKAFNDATGTDHQFVQDNHSRSVK-GVMRGLHYQVQ 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR G +FD+AVDIR++SPT+G WV +E+S +N Q+++P GFAHGF+
Sbjct: 67 QP-QGKLVRVARGAVFDVAVDIRKSSPTFGKWVGVELSEDNHRQLWVPPGFAHGFVVTSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD--TILPSVSEKDQNLPFLNQI 175
+ + +YK TD+Y+ E + +AW D I I WPL P +S KD L++
Sbjct: 126 SADFLYKTTDYYAPEFERCIAWNDSVIGIQWPLAPHGIAQPVLSAKDLQGKSLSEA 181
>gi|257093452|ref|YP_003167093.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257045976|gb|ACV35164.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 180
Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats.
Identities = 72/177 (40%), Positives = 109/177 (61%), Gaps = 4/177 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V I++ + F D+RG+F +T++ + +LGL FVQDNHS S G +RGLH+Q
Sbjct: 7 DLPDVWIVEPKVFGDARGFFMETWNRRTFADLGLDVEFVQDNHSRSRQ-GVLRGLHYQIH 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR +G +FD+AVD+RR+SP +G W + +S N +++P GFAHGF+ +
Sbjct: 66 EP-QGKLVRVTSGEVFDVAVDLRRSSPHFGRWAGVTLSGENQRMLWVPPGFAHGFLVVSP 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
+ +YK T +Y+ EH+ VAW D I I WPL D P++S KD+ L ++
Sbjct: 125 AADFLYKTTAYYAPEHERCVAWNDPDIGIRWPLDDE--PALSAKDRIGTPLRLAEAY 179
>gi|312960467|ref|ZP_07774976.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas fluorescens WH6]
gi|311285352|gb|EFQ63924.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas fluorescens WH6]
Length = 179
Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats.
Identities = 71/175 (40%), Positives = 105/175 (60%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V I++ R + D+RG+F ++Y + +++G++ FVQDNHS S G +RGLHFQR
Sbjct: 8 LPGVLIIEPRVYGDARGFFLESYQQQRYRDIGIEQPFVQDNHSRSAQ-GVLRGLHFQRS- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR G ++D+ VDI S T G V++E++A + LQ+++P G+AHGF L
Sbjct: 66 RPQGKLVRVTRGAVYDVVVDIDPASATCGEHVAVELTAEDHLQLWVPPGYAHGFCVLSDT 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ YK TD Y + + G+ W D + I WPL P +SEKDQ P L + S
Sbjct: 126 ADFQYKCTDLYDPKDEGGLLWNDPDLGIAWPLGS---PLLSEKDQRHPRLRALLS 177
>gi|51246075|ref|YP_065959.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Desulfotalea
psychrophila LSv54]
gi|50877112|emb|CAG36952.1| probable dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Desulfotalea
psychrophila LSv54]
Length = 184
Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats.
Identities = 74/174 (42%), Positives = 105/174 (60%), Gaps = 4/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ R F D+RG+F +T+ K EL FVQ+NHS S G +RGLH+Q
Sbjct: 7 KIPELVIIEPRVFADARGFFMETWQQKKFDELIGPQTFVQENHSKSS-AGILRGLHYQEK 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVDIR++S T+G WV + +SA N Q +IP GFAHGF +
Sbjct: 66 N-TQGKLVRIVIGEVFDVAVDIRKDSNTFGQWVGVLLSAENKRQFWIPKGFAHGFYVISQ 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ +YK TD+Y+ + + + W D + I WPL P +SEKDQ+ +QI
Sbjct: 125 EADFVYKCTDYYNPQAERTILWNDPDLAIDWPLKTP--PQLSEKDQSGMPFSQI 176
>gi|159046643|ref|YP_001542312.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dinoroseobacter shibae DFL
12]
gi|157914402|gb|ABV95831.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dinoroseobacter shibae DFL
12]
Length = 184
Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats.
Identities = 89/181 (49%), Positives = 117/181 (64%), Gaps = 4/181 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V++L +F D+RG+FS++YS ++L G+ FVQDNHS S GT+RGLHFQ PP
Sbjct: 8 LPGVKLLTPARFGDARGFFSESYSRRVLAGHGITLDFVQDNHSLSAQVGTVRGLHFQAPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVRC GR+FD+AVD+RR SPTYG W E+S NG Q+ +P GF HGF+T E +
Sbjct: 68 HAQDKLVRCGRGRLFDVAVDVRRGSPTYGQWFGAELSFENGKQLLVPAGFLHGFVTREPD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
TE++YK +D+Y+ E D V W S I W P +S KD L DSPF Y+
Sbjct: 128 TEIVYKCSDYYAPECDGAVHWD--SCGIDWGFEGD--PVISAKDAAAVRLADFDSPFVYE 183
Query: 183 G 183
G
Sbjct: 184 G 184
>gi|86357153|ref|YP_469045.1| dTDP-rhamnose-3,5-epimerase protein [Rhizobium etli CFN 42]
gi|86281255|gb|ABC90318.1| probable dTDP-rhamnose-3,5-epimerase protein [Rhizobium etli CFN
42]
Length = 192
Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats.
Identities = 85/181 (46%), Positives = 115/181 (63%), Gaps = 1/181 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ + + +F D RG+FS+ + +E F+QDN S S GT+RGLHFQ PP
Sbjct: 8 LEGIVAITPPRFGDHRGYFSEVFKDAWFRENVADVTFIQDNESLSAQAGTVRGLHFQIPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLVRC+AGRI D+ VDIR SP+YG W+S E+S G Q++IP GFAHGF+T+E N
Sbjct: 68 LAQGKLVRCLAGRIMDVVVDIRVGSPSYGKWLSQELSPETGKQLWIPAGFAHGFVTIEPN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
+ + YKVT YS +H+ G+AW D +I I WP + + S S+KD+ LP L + S F Y
Sbjct: 128 SVISYKVTAPYSPQHERGIAWNDPAIGIGWPFDERDMVS-SDKDKTLPRLADLPSHFSYS 186
Query: 183 G 183
Sbjct: 187 A 187
>gi|60680555|ref|YP_210699.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Bacteroides fragilis NCTC
9343]
gi|253563576|ref|ZP_04841033.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Bacteroides sp. 3_2_5]
gi|5199112|gb|AAD40710.1|AF048749_6 dTDP-6-deoxy-D-glucose-3,5 epimerase [Bacteroides fragilis]
gi|60491989|emb|CAH06750.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Bacteroides fragilis NCTC
9343]
gi|251947352|gb|EES87634.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Bacteroides sp. 3_2_5]
Length = 182
Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats.
Identities = 73/171 (42%), Positives = 106/171 (61%), Gaps = 2/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + IL+ + F+D RG+F ++++ + +E + FVQDN S S G IRGLHFQ+PP
Sbjct: 8 IEGLVILEPQLFKDDRGYFFESFNQREFEEKVCKTTFVQDNESKSS-YGVIRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ+KLVR I G + D+AVDIR+ SPT+G VS+E++ +N Q +IP GFAHGF L
Sbjct: 67 FAQSKLVRVIKGAVLDVAVDIRKGSPTFGKHVSVELTEDNHRQFFIPRGFAHGFSVLSEE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
YK +FY E + +AW D + I W + + +S+KD+ P L
Sbjct: 127 VIFQYKCDNFYHPEAEGAIAWNDPDLGIEWRVPCKSI-ILSKKDRVHPLLK 176
>gi|1944162|dbj|BAA19636.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Aggregatibacter
actinomycetemcomitans]
gi|71084099|gb|AAZ23559.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Aggregatibacter
actinomycetemcomitans]
Length = 179
Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++L+ + F D RG+F +T+ + ++ +FVQ+NHS S G +RGLH+Q
Sbjct: 7 KIPDVKLLEPQVFGDERGFFMETFRDEWFRKNVADRIFVQENHSKSIK-GVLRGLHYQTE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR I+G +FD+AVD+R NS T+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 N-TQGKLVRVISGAVFDVAVDMRGNSLTFGQWVGEILSAENKHQLWVPEGFAHGFYVLTD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E YK TD+Y+ + + + W D++I I WPL PS+S KD L +
Sbjct: 125 EAEFTYKCTDYYNPKAEHSLIWNDETIGIEWPLYGE--PSLSAKDLAGKVLAE 175
>gi|170724101|ref|YP_001751789.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida W619]
gi|169762104|gb|ACA75420.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida W619]
Length = 180
Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 104/176 (59%), Gaps = 6/176 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I++ + F DSRG+F ++++++ L G FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVLIIEPKLFGDSRGFFFESFNAREFARLTGFDAHFVQDNHSRS-QRGVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G + D+AVDIRR+SPT+G WV+ + A + Q +IP GFAHGF+ L
Sbjct: 66 DNP-QGKLVRVVQGEVLDVAVDIRRSSPTFGRWVATRLCAEDHRQFWIPPGFAHGFLVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + +YK TD+Y+ + + W D + I W + P +S KDQ L D
Sbjct: 125 ESADFLYKTTDYYNPAAERCIRWDDPQLAIDWGVE---APLLSAKDQAGALLADAD 177
>gi|332142156|ref|YP_004427894.1| dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase [Alteromonas macleodii
str. 'Deep ecotype']
gi|327552178|gb|AEA98896.1| dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase [Alteromonas macleodii
str. 'Deep ecotype']
Length = 181
Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats.
Identities = 75/177 (42%), Positives = 113/177 (63%), Gaps = 4/177 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V+I++ + F D RG+F +T+ + K+ FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPKVFGDERGFFLETFRTDWFKKECADVDFVQDNHSKSSQ-GILRGLHYQIE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR ++G ++D+AVD+R++SPTYG WV + +SA N Q+++P GFAHGF
Sbjct: 66 -QTQGKLVRVVSGEVYDVAVDMRKDSPTYGKWVGVTLSAENKRQLWVPAGFAHGFYVTSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
N E +YK TD+Y E + V + D +++I WPL++ PS+S KD+ L +D+P
Sbjct: 125 NAEFVYKCTDYYHPESEISVKYNDSTLNIDWPLVNGEKPSLSGKDEAG--LAFVDAP 179
>gi|297181613|gb|ADI17797.1| dtdP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[uncultured Sphingobacteriales bacterium HF0130_33B19]
Length = 182
Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats.
Identities = 74/179 (41%), Positives = 111/179 (62%), Gaps = 4/179 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I + I+K + F D RG F ++++ K +++GL F QDN S S G +RGLHFQ
Sbjct: 6 LSIEGLLIIKPKVFGDERGHFFESWNKKAYQDIGLDLDFTQDNQSIS-QKGVLRGLHFQN 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PPYAQ KLVR I G + D+AVD+R+ S TYG +S++++ N +IP GFAHGF+ LE
Sbjct: 65 PPYAQGKLVRVIKGAVIDVAVDLRKGSLTYGQHISVKLTEQNMKTFWIPPGFAHGFVALE 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T YK T+ Y+ + + + W D ++I+W + + P VSEKD++ SPF
Sbjct: 125 NDTIFSYKCTEVYNQDAEGSLLWNDPDLNISWGVQN---PLVSEKDKHSCLFKNFKSPF 180
>gi|241763426|ref|ZP_04761480.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidovorax delafieldii 2AN]
gi|241367368|gb|EER61689.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidovorax delafieldii 2AN]
Length = 181
Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats.
Identities = 75/177 (42%), Positives = 110/177 (62%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ + F D+RG+F ++++ + G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVVLIEPKVFGDARGFFYESFNQRDFNAATGTDYQFVQDNHSRSSK-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR + G +FD+AVDIR++SPT+G WV E+SA+N Q++IP GFAHGF+ L
Sbjct: 65 VQQP-QGKLVRVVHGAVFDVAVDIRKSSPTFGQWVGAELSADNHHQLWIPPGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ EH+ +AW D ++ I W T P++S KD L Q +
Sbjct: 124 SDVAEFLYKTTDYYAPEHERCIAWNDSTLAIDWRFEGT--PNLSVKDAQGRVLVQAE 178
>gi|127512335|ref|YP_001093532.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella loihica PV-4]
gi|126637630|gb|ABO23273.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella loihica PV-4]
Length = 181
Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats.
Identities = 76/175 (43%), Positives = 104/175 (59%), Gaps = 6/175 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
I V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 KIPDVKIIEPTVFGDERGFFMETWNQKRFEELVTGKHTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR I G +FD+AVDIR+ SPT+G WV +SA N Q+++P GFAHGF
Sbjct: 66 TEN-TQGKLVRVIYGEVFDVAVDIRKGSPTFGKWVGEYLSAENNRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ E +YK TD+Y+ + + W DK + I WP P +S KD N +N+
Sbjct: 125 SEHAEFVYKCTDYYNPHMECSIQWDDKFLSIEWPFESE--PILSSKDSNCLGMNE 177
>gi|166362759|ref|YP_001655032.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Microcystis aeruginosa
NIES-843]
gi|166085132|dbj|BAF99839.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Microcystis aeruginosa
NIES-843]
Length = 181
Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats.
Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I++ + + D RG+F ++++ K +E G+ FVQDNHS S +RGLH+Q
Sbjct: 7 EIPDVLIIEPQVYGDDRGFFLESFNQKDFREKTGVNTTFVQDNHSMSLK-NVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLVR + G +FD+AVD R++SPT+G WV +SA N ++P GFAHGF+ L
Sbjct: 66 -PNPQGKLVRVVNGSVFDVAVDARQSSPTFGQWVGCILSAENKRIFWVPEGFAHGFLVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK T++Y +++ + W D + I WPL P +S KDQ ++
Sbjct: 125 DRAEFLYKTTNYYYPQYEKTILWNDADLGIDWPLETP--PILSPKDQAGQPFKSVE 178
>gi|330961714|gb|EGH61974.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 181
Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats.
Identities = 77/177 (43%), Positives = 113/177 (63%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + + F D RG+F ++++ K +E+ G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVIVFEPKTFGDDRGFFFESFNQKAFEEVVGRSVKFVQDNHSRSVK-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR AG +FD+AVD+R++SPT+G WV L ++A N Q++IP GFAHGF+ L
Sbjct: 65 IQQP-QGKLVRVTAGEVFDVAVDLRKSSPTFGKWVGLHLTAENKKQLWIPEGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+++ EH+ +AW D +++I WPL D PS+S KDQ +
Sbjct: 124 SESAEFLYKTTDYWAPEHERSLAWNDPTVNIEWPLSDA--PSLSVKDQKAVTFEDAE 178
>gi|119513382|ref|ZP_01632415.1| dTDP-4-dehydrorhamnose 3,5-epimerase-like protein [Nodularia
spumigena CCY9414]
gi|119461961|gb|EAW42965.1| dTDP-4-dehydrorhamnose 3,5-epimerase-like protein [Nodularia
spumigena CCY9414]
Length = 212
Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 108/176 (61%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ V +++ + F DSRG+F ++Y+ + +LG+ FVQDNHS S +RGLH+Q
Sbjct: 38 EISEVYLIEPQVFTDSRGFFLESYNQQKFTDKLGITVNFVQDNHSAS-QQNVLRGLHYQI 96
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G+IFD+AVDIR++SPT+G WV E+SA N Q++IP GFAHGF+ L
Sbjct: 97 IQP-QGKLVRAVVGKIFDVAVDIRKSSPTFGQWVGYELSAENKRQLWIPPGFAHGFLVLS 155
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EV YK TD+Y+ + D + W D + I WP+ P +S+KD +
Sbjct: 156 EVAEVTYKTTDYYAAQGDRTILWNDPDLAINWPIKQP--PILSDKDNKGQPFKTAE 209
>gi|170755117|ref|YP_001782316.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum B1 str.
Okra]
gi|169120329|gb|ACA44165.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum B1 str.
Okra]
Length = 189
Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats.
Identities = 77/173 (44%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + +++ + F D RG+F +T++ + K GL VFVQDN S S G +RGLHFQ+
Sbjct: 11 IEDLYVIEPKVFSDPRGYFMETHNYEDFKTAGLDMVFVQDNQSKS-KKGVLRGLHFQKK- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR I G +FD+AVDIR NS T+G W + +S N Q YIP GFAHGF+ L
Sbjct: 69 HPQGKLVRVIKGEVFDVAVDIRENSSTFGKWYGVILSEENKKQFYIPGGFAHGFLVLSDE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL--DTILPSVSEKDQNLPFLN 173
E YK TDFY E + G+ W D +I I WP +SEKD+ L
Sbjct: 129 AEFYYKCTDFYHPEDEGGIIWNDPTISIVWPFEKIKDANILLSEKDRKWTILE 181
>gi|300704901|ref|YP_003746504.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Ralstonia solanacearum
CFBP2957]
gi|299072565|emb|CBJ43915.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia solanacearum
CFBP2957]
Length = 183
Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats.
Identities = 71/175 (40%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++++++ ++ G++ FVQDNHS S G +RGLH+Q
Sbjct: 10 IPEVLILEPKVFGDDRGFFFESFNARTFEQATGVKRTFVQDNHSRSAR-GVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G +FD+AVD+R++SPT+G WV + +SA N Q+++P GFAHGF+
Sbjct: 69 -HPQGKLVRVTVGEVFDVAVDLRKSSPTFGKWVGVTLSAENKRQLWVPEGFAHGFVVTSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD++ EH+ + W D + I WP T P ++ KD L + D
Sbjct: 128 YAEFLYKTTDYWYAEHERSIVWNDPDLGIEWPAQGT--PILAAKDAAGARLARAD 180
>gi|73540421|ref|YP_294941.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia eutropha JMP134]
gi|72117834|gb|AAZ60097.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia eutropha JMP134]
Length = 183
Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats.
Identities = 69/175 (39%), Positives = 115/175 (65%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+I++ + F D RG+F ++++++ ++ GL+ FVQDNHS S CG +RGLH+Q
Sbjct: 10 IPEVKIIEPKVFGDDRGFFLESFNARAFEQAMGLKRDFVQDNHSRSA-CGVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR +AG +FD+AVD+R++SPT+G WV + +S +N Q+++P GFAHGF+ +
Sbjct: 69 -HPQGKLVRVVAGEVFDVAVDLRKSSPTFGKWVGVTLSVDNKRQLWVPEGFAHGFLVMSS 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD++ E++ + W D ++ I WPL P ++ KD+ ++
Sbjct: 128 SAEFLYKTTDYWYPEYERSLLWNDPTVGIEWPLTGD--PILAAKDEAGKLFKDVE 180
>gi|308234493|ref|ZP_07665230.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Atopobium vaginae DSM 15829]
Length = 198
Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats.
Identities = 77/184 (41%), Positives = 104/184 (56%), Gaps = 8/184 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ + I+ T+ F D RG+F +TY + G+ FVQDNHS S G +RGLHFQ
Sbjct: 17 KVDGLFIINTKIFGDERGFFMETYKEPDFIQAGITTKFVQDNHSKSCR-GVLRGLHFQIH 75
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q+KLVR + GR+FD+AVD+R++S TYG W + +S +N Q +IP GFAHGF+ L
Sbjct: 76 -HPQSKLVRVVKGRVFDVAVDLRKDSATYGQWEGVILSEDNHTQFFIPQGFAHGFLVLSD 134
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL------DTILPSVSEKDQNLPFLNQI 175
E YK D Y + G+ W D I I WP L D +SEKD+ PFL
Sbjct: 135 EAEFCYKCDDIYHPGDEGGIMWNDPDIAIEWPALSGDTAFDPSELILSEKDKTHPFLRDS 194
Query: 176 DSPF 179
F
Sbjct: 195 KVSF 198
>gi|16129978|ref|NP_416542.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Escherichia coli str. K-12
substr. MG1655]
gi|89108858|ref|AP_002638.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Escherichia coli str. K-12
substr. W3110]
gi|170081668|ref|YP_001730988.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Escherichia coli str. K-12
substr. DH10B]
gi|238901228|ref|YP_002927024.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Escherichia coli BW2952]
gi|585830|sp|P37745|RMLC_ECOLI RecName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; AltName:
Full=Thymidine diphospho-4-keto-rhamnose 3,5-epimerase;
AltName: Full=dTDP-4-keto-6-deoxyglucose 3,5-epimerase;
AltName: Full=dTDP-6-deoxy-D-xylo-4-hexulose
3,5-epimerase; AltName: Full=dTDP-L-rhamnose synthase
gi|508240|gb|AAB88401.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli]
gi|510251|gb|AAC31630.1| dTDP-6-deoxy-L-xylo-4-hexulose 4-reductase [Escherichia coli str.
K12 substr. W3110]
gi|1736728|dbj|BAA15880.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Escherichia coli str. K12
substr. W3110]
gi|1788350|gb|AAC75099.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Escherichia coli str. K-12
substr. MG1655]
gi|169889503|gb|ACB03210.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Escherichia coli str. K-12
substr. DH10B]
gi|238861013|gb|ACR63011.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Escherichia coli BW2952]
gi|260448862|gb|ACX39284.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli DH1]
gi|281179137|dbj|BAI55467.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli SE15]
gi|315136672|dbj|BAJ43831.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Escherichia coli DH1]
Length = 185
Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats.
Identities = 80/175 (45%), Positives = 108/175 (61%), Gaps = 4/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V IL+ R F D RG+F ++++ + LG FVQDNHS S +RGLHFQR
Sbjct: 7 EIEDVLILEPRVFGDDRGFFYESFNQSAFEHILGYPVSFVQDNHSRSSK-NVLRGLHFQR 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
YAQ KLVRC G +FD+AVDIR NS ++G WV + +SA+N Q++IP GFAHGF+ L
Sbjct: 66 GEYAQDKLVRCTHGAVFDVAVDIRPNSVSFGKWVGVLLSADNKQQLWIPKGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YK T++Y E D G+ W D+ I I WP + +S KD+ L L+++
Sbjct: 126 DIAEFQYKTTNYYHPESDCGICWNDERIAIDWPQTSGL--ILSPKDERLFTLDEL 178
>gi|327404038|ref|YP_004344876.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fluviicola taffensis DSM
16823]
gi|327319546|gb|AEA44038.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fluviicola taffensis DSM
16823]
Length = 182
Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats.
Identities = 79/179 (44%), Positives = 112/179 (62%), Gaps = 5/179 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +++ F D RG+F +++ + E +G + FVQDN S S G +RGLHFQ P
Sbjct: 8 IVDVLLIQPTIFGDDRGYFFESFHQQKFNEFIGAEINFVQDNESKSAK-GVLRGLHFQAP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVR + G + D+A+DIR+NSPTYG VS +SA N +Q YIP GFAHGF+TLE
Sbjct: 67 PHAQGKLVRVVQGSVLDVALDIRKNSPTYGQHVSFVLSAENKMQAYIPAGFAHGFVTLEK 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T YK T++Y+ + + W D ++ I W + P +S+KD+ L +SPFE
Sbjct: 127 DTIFQYKCTNWYNPSSEGSILWNDPALTIQW---QEMNPILSDKDKLGILLADFNSPFE 182
>gi|218247213|ref|YP_002372584.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 8801]
gi|218167691|gb|ACK66428.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 8801]
Length = 181
Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats.
Identities = 70/176 (39%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I++ F D RG+F +++++K E G+ FVQDNHS S +RGLH+Q
Sbjct: 7 KIPDVMIIEPNVFGDDRGFFYESFNAKKFAEETGVNPNFVQDNHSKSGK-NVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G + DIAVDIR++SP++G WV ++ N Q ++P GFAHGF+ L
Sbjct: 66 Q-QTQGKLVRVVVGEVLDIAVDIRKSSPSFGQWVGCILNTENKRQFWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ +++ + W D I+I W + D P +S+KDQ L +
Sbjct: 125 DVAEFLYKTTDYYAPQYERSILWNDPDINIDWQITDQ--PILSKKDQLASRLKDAE 178
>gi|190891199|ref|YP_001977741.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhizobium etli CIAT 652]
gi|190696478|gb|ACE90563.1| dTDP-4-dehydrorhamnose 3,5-epimerase protein [Rhizobium etli CIAT
652]
Length = 192
Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats.
Identities = 87/181 (48%), Positives = 114/181 (62%), Gaps = 1/181 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + + +F D RG+FS+ + +E FVQDN S S GT+RGLHFQ P
Sbjct: 8 IEGIVAITPPRFGDHRGYFSEVFKDAWFRENVADVTFVQDNESLSAQAGTVRGLHFQISP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVRC+AGRI D+ VDIR SP+YG W+S E+S G Q++IP GFAHGF T+E N
Sbjct: 68 FAQGKLVRCLAGRIMDVVVDIRVGSPSYGEWLSQELSPETGKQLWIPAGFAHGFATIEPN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
+ + YKVT YS +HD G+AW D +I I WP + + S S+KD+ LP L + S F Y
Sbjct: 128 SVISYKVTAPYSPQHDRGIAWNDPAIGIRWPFDERDMVS-SDKDKTLPRLADLPSHFSYS 186
Query: 183 G 183
Sbjct: 187 A 187
>gi|308388283|gb|ADO30603.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
alpha710]
Length = 190
Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats.
Identities = 74/174 (42%), Positives = 100/174 (57%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ KE FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDGWFKENIADCSFVQENHSKSGK-GVLRGLHYQTEN 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L
Sbjct: 72 -TQGKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFYVLSDT 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
TE+ YK TD+Y E + + W D +I I WPL P +S KD Q +
Sbjct: 131 TELTYKCTDYYKPEAEQVLIWNDPAIGIGWPL--QTAPLLSPKDLAGKTWAQAE 182
>gi|194334530|ref|YP_002016390.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prosthecochloris aestuarii
DSM 271]
gi|194312348|gb|ACF46743.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prosthecochloris aestuarii
DSM 271]
Length = 181
Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats.
Identities = 69/173 (39%), Positives = 102/173 (58%), Gaps = 2/173 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V + + R F D RG+F +++ ++ FVQDN S S G +RGLHFQ+
Sbjct: 8 IPDVLVFEPRIFGDERGYFFESFRQDFFEKHAGDVHFVQDNESRS-HYGVLRGLHFQKAQ 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+Q KLVR + G + D+AVDIR+ SP +G V++ ++A ++IP GFAHGF+ L
Sbjct: 67 YSQGKLVRVVEGAVLDVAVDIRKGSPWFGKHVAMHLNAEKKNMMWIPRGFAHGFVVLSET 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK ++Y+ E D+G+ W D ++ I W + D + VSEKD NL L +I
Sbjct: 127 AVFTYKCDNYYAPEADAGIRWNDPALGIEWGV-DASVIEVSEKDANLALLAEI 178
>gi|26987007|ref|NP_742432.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida KT2440]
gi|24981624|gb|AAN65896.1|AE016217_8 dTDP-4-dehydrorhamnose 3,5-epimerase family protein [Pseudomonas
putida KT2440]
Length = 181
Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats.
Identities = 73/175 (41%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ + F DSRG+F + ++++ E G+ FVQDNHS S G +RGLH+Q
Sbjct: 8 IPEVLIIEPKVFADSRGFFFEAFNAREFSEQTGVNVTFVQDNHSRSIK-GVLRGLHYQVA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G I DIAVD+R++SPT+G WV++ +SA+N Q++IP GFAHGF +
Sbjct: 67 N-TQGKLVRVVHGEIRDIAVDVRKSSPTFGKWVAVHLSADNHRQLWIPPGFAHGFAVMSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+Y+ D + W D + I W L P +S+KD+ L + +
Sbjct: 126 SAEFLYKTTDYYNPGADRCIRWDDPQLAIDWGLQQP--PLLSDKDKVGLPLAEAE 178
>gi|76666636|emb|CAJ31157.1| probable dTDP-4-dehydrorhamnose 3,5-epimerase [uncultured
sulfate-reducing bacterium]
Length = 180
Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats.
Identities = 77/172 (44%), Positives = 106/172 (61%), Gaps = 3/172 (1%)
Query: 4 NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPY 63
V +LK + FED+RG+F +T++SK L ELG+ +VQDNHS S G +RGLH+Q
Sbjct: 2 PGVYLLKPQVFEDNRGFFMETFNSKGLAELGIDRQWVQDNHSRSAR-GVLRGLHYQLG-R 59
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
QAKLVR GR+FD+AVDIR SP +G W E+S N L ++ P GFAHGF+ L
Sbjct: 60 PQAKLVRATRGRVFDVAVDIRPGSPHFGQWTGAELSEENKLMLFAPEGFAHGFVVLSDVA 119
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YK +D+++ + +AW D I I WP+ + P +S KD P L ++
Sbjct: 120 EFQYKCSDYWAPAEERAIAWNDPDIGIEWPV-EGFEPQLSGKDAANPKLAEV 170
>gi|228906952|ref|ZP_04070819.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis IBL
200]
gi|228852700|gb|EEM97487.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis IBL
200]
Length = 181
Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats.
Identities = 85/178 (47%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+FS++Y+ ++L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDERGFFSESYNKQVLETLGITYTFVQDNVSYSAKAGTIRGLHFQKK 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R+ SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKKSPTFKQWKGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS EHDSG+ W+DK + I WP+ D P +S+KDQ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSAEHDSGLLWEDKDLAIPWPVTD---PILSDKDQILPLLEEYEDSF 181
>gi|225025807|ref|ZP_03714999.1| hypothetical protein EUBHAL_00032 [Eubacterium hallii DSM 3353]
gi|224956891|gb|EEG38100.1| hypothetical protein EUBHAL_00032 [Eubacterium hallii DSM 3353]
Length = 203
Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats.
Identities = 79/189 (41%), Positives = 101/189 (53%), Gaps = 18/189 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ DSRG+F +TY+ + E GL FVQDN S S G +RGLHFQ+
Sbjct: 12 GIEGLCIIEPTLHGDSRGYFMETYNKNDMAEAGLTMEFVQDNQSAS-TKGVLRGLHFQKQ 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR I G +FD+ VD+R +S TYG W +SA N Q YIP GFAHGF+ L
Sbjct: 71 -HPQGKLVRVINGTVFDVVVDLRSHSGTYGKWFGEILSAENNKQFYIPEGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YK TDFY + G+AW D I I WP L D ++SEK
Sbjct: 130 TAEFCYKCTDFYHPGDEGGLAWNDPEIGIEWPELVGEYSGCATAKGYHLKDGTSLTLSEK 189
Query: 166 DQNLPFLNQ 174
DQ + +
Sbjct: 190 DQKWLGIAE 198
>gi|157961246|ref|YP_001501280.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella pealeana ATCC
700345]
gi|157846246|gb|ABV86745.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella pealeana ATCC
700345]
Length = 189
Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats.
Identities = 73/173 (42%), Positives = 106/173 (61%), Gaps = 7/173 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-----DVFVQDNHSFSFDCGTIRGL 56
+I V + + + F D+RG+F +T+ + L + FVQ+N S S +RGL
Sbjct: 8 SIPDVLLFEPQVFGDARGFFMETFRQSEFEALFAEVGMVCPSFVQENMSRSAK-NVLRGL 66
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H+Q Q KL+R AG IFD+AVD+R+ S TYG W +SA N LQ+YIP GFAHGF
Sbjct: 67 HYQTLQP-QGKLIRVTAGSIFDVAVDLRKGSKTYGQWFGQTLSAENRLQLYIPPGFAHGF 125
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
+TL + ++IYK TD+Y+ EH+ +AW D ++I WP+ + + P +SEKD
Sbjct: 126 LTLSDHADIIYKCTDYYAPEHERTIAWNDPQLNIQWPIGEGVKPILSEKDGKA 178
>gi|152978508|ref|YP_001344137.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus succinogenes
130Z]
gi|150840231|gb|ABR74202.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus succinogenes
130Z]
Length = 180
Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats.
Identities = 69/174 (39%), Positives = 100/174 (57%), Gaps = 4/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++L+ D RG+F +T+ + K+ FVQ+NHS S G +RGLH+Q
Sbjct: 7 KIPEVKLLEPTVLGDERGFFMETFRDEWFKQNVADRTFVQENHSKSVK-GVLRGLHYQTE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 N-TQGKLVRVVQGEVFDVAVDMRKSSPTFGQWVGEILSAENKRQLWVPEGFAHGFYVLSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YK TD+Y+ + + + W D ++ I W L+ PS+S KD L
Sbjct: 125 TAEFTYKCTDYYNPKAEHSLLWNDPTVGIMWNLVGE--PSLSTKDLAGKLLKDA 176
>gi|228920040|ref|ZP_04083389.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228839496|gb|EEM84788.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 181
Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats.
Identities = 84/178 (47%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+FS++Y+ ++L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDERGFFSESYNKQVLETLGITYSFVQDNVSYSVKAGTIRGLHFQKK 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R+ SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKKSPTFKQWKGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS EHDSG+ W+DK + I WP+ D P +S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSAEHDSGLLWEDKDLAIPWPVTD---PILSDKDRILPLLEEYEDSF 181
>gi|316983890|gb|EFV62869.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
H44/76]
gi|325133135|gb|EGC55806.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis M6190]
gi|325135185|gb|EGC57810.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
M13399]
gi|325141222|gb|EGC63721.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis CU385]
gi|325199289|gb|ADY94744.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
H44/76]
gi|325205165|gb|ADZ00618.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
M04-240196]
Length = 185
Score = 257 bits (657), Expect = 6e-67, Method: Composition-based stats.
Identities = 71/174 (40%), Positives = 103/174 (59%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLHYQTEN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 67 -TQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y E + + W D ++ I WPL P +S KD Q +
Sbjct: 126 AEFVYKCTDYYKPEAEQVLIWNDPTVGIGWPL--QTAPLLSPKDLAGKTWAQAE 177
>gi|254671514|emb|CBA09106.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
alpha153]
Length = 184
Score = 257 bits (657), Expect = 6e-67, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 102/173 (58%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLHYQTEN 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+A+D+R SPT+G W +SA N Q++IP GFAHGF L
Sbjct: 72 -TQGKLVRVVVGEVFDVAIDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFYVLSDT 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
TE+ YK TD+Y E + + W D +I I WPL P++S KD L +
Sbjct: 131 TELTYKCTDYYKPEAEQVLIWNDPAIGIDWPLQGE--PNLSPKDLAGKVLAEA 181
>gi|332995215|gb|AEF05270.1| dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase [Alteromonas sp. SN2]
Length = 181
Score = 257 bits (657), Expect = 6e-67, Method: Composition-based stats.
Identities = 72/176 (40%), Positives = 110/176 (62%), Gaps = 2/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V+I++ + F D RG+F +T+ + K+ FVQDNHS S G +RGLH+Q
Sbjct: 7 DIPDVKIIEPKVFGDERGFFLETFRTDWFKKECADVEFVQDNHSKSSQ-GILRGLHYQLE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR ++G ++D+AVD+R++SPTYG WV + +SA N Q+++P GFAHGF
Sbjct: 66 -QTQGKLVRVVSGEVYDVAVDMRKDSPTYGKWVGVLLSAENKRQLWVPAGFAHGFYVTSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ E +YK TD+Y E + V + D +++I WPL++ PS+S KD+N +
Sbjct: 125 SAEFVYKCTDYYHPESEVSVKFNDPTLNIDWPLVNGEKPSLSGKDENGVAFVDAPT 180
>gi|148545536|ref|YP_001265638.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida F1]
gi|148509594|gb|ABQ76454.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida F1]
Length = 181
Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats.
Identities = 71/175 (40%), Positives = 109/175 (62%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ + F DSRG+F + ++++ ++ G+ FVQDNHS S G +RGLH+Q
Sbjct: 8 IPEVLIIEPKVFADSRGFFFEAFNAREFSQQTGVNMEFVQDNHSRSIK-GVLRGLHYQVA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G I DIAVD+R++SPT+G WV++ +SA+N Q+++P GFAHGF +
Sbjct: 67 N-TQGKLVRVVHGEIRDIAVDVRKSSPTFGKWVAVHLSADNHRQLWVPPGFAHGFAVMSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+Y+ D + W D + I W L P +S+KD+ L + +
Sbjct: 126 SAEFLYKTTDYYNPGADRCIRWDDPQLAIDWGLQQP--PLLSDKDKVGLPLAEAE 178
>gi|115350807|ref|YP_772646.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria AMMD]
gi|115280795|gb|ABI86312.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria AMMD]
Length = 183
Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 112/176 (63%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGL-QDVFVQDNHSFSFDCGTIRGLHFQR 60
++ V+I++ + F D+RG+F ++++++ E FVQDNHS S G +RGLH+Q
Sbjct: 9 SLPEVKIVEPKVFGDARGYFYESFNAREFAEHVAADVEFVQDNHSRSAK-GVLRGLHYQI 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AQ KLVR + G +FD+AVDIRR+SP +G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 68 R-HAQGKLVRVVEGEVFDVAVDIRRSSPDFGKWVGVVLSAENHRQVWIPPGFAHGFVVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD++ EH+ + W D +I I WP+ + P ++ KD L++ +
Sbjct: 127 DAAQFLYKTTDYWYPEHERCIVWNDPAIGIEWPV--DVDPLLAAKDAAGARLSEAE 180
>gi|302880019|ref|YP_003848583.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gallionella capsiferriformans
ES-2]
gi|302582808|gb|ADL56819.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gallionella capsiferriformans
ES-2]
Length = 181
Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats.
Identities = 73/175 (41%), Positives = 104/175 (59%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + IL+ + F D RG+F ++++ + EL G FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDLLILEPKVFGDDRGFFYESFNRQKFSELTGRDADFVQDNHSRSVK-GVLRGLHYQIQ 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ QAKLVR + G + D+AVDIR++SPT+G V+LE+SA N +IP GFAHGF+ L
Sbjct: 67 -HPQAKLVRVVQGAVLDVAVDIRKSSPTFGQHVALELSAENKRMFWIPEGFAHGFVVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD++ E + + W D I I W + P++S KD L +
Sbjct: 126 TAEFLYKTTDYWYPEFERSIVWDDPEIAIDWQV--QAPPALSAKDLQGKSLAGAE 178
>gi|311697176|gb|ADQ00048.1| dTDP-4-dehydrorhamnose 3,5-epimerase [marine bacterium HP15]
Length = 181
Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 103/175 (58%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++++ + F D RG+F +T++ K +E G+ FVQDNHS S T+RGLH+Q
Sbjct: 7 KIPAVKLIEPKVFGDERGFFMETWNEKAFREAGIDATFVQDNHSRSVK-NTLRGLHYQIK 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR G +FD+AVD+R +S T G WV +S N +++P GFAHGF+
Sbjct: 66 QP-QGKLVRVTRGEVFDVAVDLRSDSSTCGQWVGEYLSEKNNRMLWVPPGFAHGFLVTSD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ YK TDFY+ E++ + WQD + I WPL ++ P +S KDQ + +
Sbjct: 125 TADFQYKCTDFYAPEYERSIYWQDLQLRICWPLQKSLKPLISRKDQLAISYAEAE 179
>gi|325135201|gb|EGC57826.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
M13399]
gi|325205184|gb|ADZ00637.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
M04-240196]
Length = 179
Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLHYQTEN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L
Sbjct: 67 -TQGKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFYVLSDT 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E+ YK TD+Y E + + W D +I I WPL P++S KD L +
Sbjct: 126 AELTYKCTDYYKPEAEQVLIWNDPAIGIDWPLQGE--PNLSPKDLAGKVLAEA 176
>gi|229101900|ref|ZP_04232614.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock3-28]
gi|228681483|gb|EEL35646.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock3-28]
Length = 181
Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats.
Identities = 84/178 (47%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDERGFFTESYNKKVLETLGITYSFVQDNVSYSAQAGTIRGLHFQKK 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R+ SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKGSPTFRQWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS EHDSG+ W+DK + I WP+ + P +S+KD+ LP L + D F
Sbjct: 127 HTLVMYKVDEYYSAEHDSGLLWEDKELAIPWPVAN---PILSDKDRILPLLQEYDDSF 181
>gi|315649938|ref|ZP_07903018.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium saburreum DSM
3986]
gi|315487708|gb|EFU78011.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium saburreum DSM
3986]
Length = 183
Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats.
Identities = 69/173 (39%), Positives = 100/173 (57%), Gaps = 3/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + ++ F+D RG+F +TY+ E GL FVQDN S S G +RGLHFQ+
Sbjct: 10 DIEGLCVITPTVFKDDRGYFVETYNKNDFAEAGLNMEFVQDNQSKSSK-GVLRGLHFQKE 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR ++G ++D+AVD+R++S TYG + + +S N Q YIP GFAHGF L
Sbjct: 69 -HPQGKLVRVLSGEVYDVAVDLRKDSKTYGKYFGVILSDENKKQFYIPEGFAHGFAVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
YK TDFY + G+ + D I I WP+ + + +S+KD L +
Sbjct: 128 EAVFAYKCTDFYHPNDEGGLKYDDPDIGIDWPI-EGLKLIMSDKDTKWKGLKE 179
>gi|16611740|gb|AAL27325.1|AF402313_5 dTDP-6-deoxy-D-glucose-3,5 epimerase [Shigella boydii]
Length = 178
Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats.
Identities = 82/172 (47%), Positives = 113/172 (65%), Gaps = 5/172 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFFESFNQKIFEEAVGRKVEFVQDNHSKSSK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++S T+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSTTFGKWVGVNLSAENKRQLWIPEGFAHGFITLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD-QNLPF 171
E IYK T FY+ + +AW D ++I W + LP VS+KD + LPF
Sbjct: 126 NIAEFIYKTTQFYNPSFERVIAWDDPVLNINWNIK--QLPFVSKKDMKGLPF 175
>gi|30019366|ref|NP_830997.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus ATCC 14579]
gi|228951698|ref|ZP_04113800.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228957591|ref|ZP_04119342.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|229043064|ref|ZP_04190794.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH676]
gi|229068875|ref|ZP_04202169.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus F65185]
gi|229126627|ref|ZP_04255639.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus BDRD-Cer4]
gi|229143928|ref|ZP_04272345.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus BDRD-ST24]
gi|296501909|ref|YP_003663609.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
BMB171]
gi|29894909|gb|AAP08198.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus ATCC 14579]
gi|228639491|gb|EEK95904.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus BDRD-ST24]
gi|228656567|gb|EEL12393.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus BDRD-Cer4]
gi|228714159|gb|EEL66040.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus F65185]
gi|228726305|gb|EEL77532.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH676]
gi|228802090|gb|EEM48956.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228807983|gb|EEM54500.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|296322961|gb|ADH05889.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
BMB171]
Length = 181
Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats.
Identities = 85/178 (47%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+FS++Y+ ++L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDERGFFSESYNKQVLETLGITYSFVQDNVSYSAKAGTIRGLHFQKK 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R+ SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKKSPTFKQWKGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS EHDSG+ W+DK + I WP+ D P +S+KDQ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSAEHDSGLLWEDKDLAIPWPVTD---PILSDKDQILPLLEEYEDSF 181
>gi|52840993|ref|YP_094792.1| dTDP-6-deoxy-D-glucose-3,5-epimerase RmlC [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|54296783|ref|YP_123152.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Legionella pneumophila str.
Paris]
gi|52628104|gb|AAU26845.1| dTDP-6-deoxy-D-glucose-3,5-epimerase RmlC [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|53750568|emb|CAH11970.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Legionella pneumophila str.
Paris]
gi|307609552|emb|CBW99052.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Legionella pneumophila 130b]
Length = 187
Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats.
Identities = 73/177 (41%), Positives = 106/177 (59%), Gaps = 5/177 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ ++I++ + + D RG+F +++ +K +EL G+ D FVQDN S S G +RGLH+Q
Sbjct: 7 QIDELKIIEPKIYGDERGFFYESFQAKRYEELLGITDRFVQDNFSRS-QKGVLRGLHYQS 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLV +AG +FD+AVDIR SPT+G WV + +S N Q +IP GFAHGF L
Sbjct: 66 Q-QTQGKLVSVLAGEVFDVAVDIRLGSPTFGQWVGVILSGENKRQFWIPKGFAHGFYVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ YK TD+Y E + + + D + I WPL + + +S KD LN ID+
Sbjct: 125 AMADFAYKCTDYYHPESEFSIHYLDPQLAIDWPLGEQV--QLSPKDAAAKLLNLIDA 179
>gi|271499809|ref|YP_003332834.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dickeya dadantii Ech586]
gi|270343364|gb|ACZ76129.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dickeya dadantii Ech586]
Length = 178
Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats.
Identities = 73/174 (41%), Positives = 104/174 (59%), Gaps = 6/174 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+I++ + F D+RG+F +T+ K +E+ + FVQDNHS S G +RGLHFQ
Sbjct: 8 IQGVKIIQPKVFGDARGFFLETFEKKRYQEMLDIDLDFVQDNHSRSAR-GVLRGLHFQTV 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVDIR +SPTYG W + +S N Q +IP G AHGF+ L
Sbjct: 67 NP-QGKLVRVVRGEVFDVAVDIRPDSPTYGRWAGVNLSEENKTQFWIPPGLAHGFVVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK TD+Y+ H+ + W D I I WP+ LP +S+KD+ ++
Sbjct: 126 LADFEYKCTDYYNPVHEGCLLWNDPDIGIDWPIT---LPLLSDKDKKGKAFKEL 176
>gi|189465696|ref|ZP_03014481.1| hypothetical protein BACINT_02057 [Bacteroides intestinalis DSM
17393]
gi|189433960|gb|EDV02945.1| hypothetical protein BACINT_02057 [Bacteroides intestinalis DSM
17393]
Length = 182
Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats.
Identities = 68/174 (39%), Positives = 104/174 (59%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V +++ + F D RG+F + + + K FVQDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPKVFRDERGYFMEAFKEEDFKAHIGDVHFVQDNESKSS-FGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q+KLVR I G++ D+AVD+RR SPT+G +VS+E+S N Q +IP GFAHGF+ L
Sbjct: 66 EYCQSKLVRVIKGKVLDVAVDLRRTSPTFGKYVSVELSEENQRQFFIPRGFAHGFLVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YKV + Y+ + ++ + + D++I I WP+ + L +S KD+ P
Sbjct: 126 EAIFTYKVDNVYAPQAEASIRFNDETIGIDWPVAEEHL-LLSPKDKAAPLFKDA 178
>gi|104779535|ref|YP_606033.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Pseudomonas
entomophila L48]
gi|95108522|emb|CAK13216.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Pseudomonas
entomophila L48]
Length = 181
Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 105/175 (60%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ + F D RG+F ++++++ E G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPEVLIIEPKVFGDDRGFFFESFNAREFAEKAGFEAGFVQDNHSRS-QRGVLRGLHYQID 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G + D+AVDIRR+S T+G WV+ + A + Q +IP GFAHGF+ L
Sbjct: 67 NP-QGKLVRVVQGEVLDVAVDIRRSSKTFGKWVATRLCAKDHTQFWIPPGFAHGFLVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD+Y+ + + + W D + I W L P +S KDQ FL++ +
Sbjct: 126 TADFLYKTTDYYNPKAERCIRWDDPELGIEWGLEAP--PILSAKDQAGAFLHEAE 178
>gi|331004468|ref|ZP_08327939.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lachnospiraceae oral taxon
107 str. F0167]
gi|330411035|gb|EGG90456.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lachnospiraceae oral taxon
107 str. F0167]
Length = 186
Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats.
Identities = 73/183 (39%), Positives = 105/183 (57%), Gaps = 6/183 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ F+D RG+F +TY+ KE GL VFVQDN S S G +RGLHFQ+
Sbjct: 10 EIEGLCVITPTVFKDDRGYFIETYNQNDFKEAGLDMVFVQDNESKSSR-GVLRGLHFQKE 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR ++G ++D+AVD+R+NS T+G + +S+ N Q YIP GFAHGF+ L
Sbjct: 69 -HPQGKLVRVLSGEVYDVAVDLRKNSKTFGKHFGVLLSSENKKQFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK TDFY + G+ + D I I WP+ + + +SEKD + + F +
Sbjct: 128 EAVFAYKCTDFYHPNDEGGIIYNDPDIGINWPI-EGMELIMSEKDTKWKGIKET---FNF 183
Query: 182 DGL 184
D
Sbjct: 184 DKF 186
>gi|270261089|ref|ZP_06189362.1| hypothetical protein SOD_a03140 [Serratia odorifera 4Rx13]
gi|270044573|gb|EFA17664.1| hypothetical protein SOD_a03140 [Serratia odorifera 4Rx13]
Length = 177
Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats.
Identities = 65/175 (37%), Positives = 103/175 (58%), Gaps = 6/175 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V++++ + F D RG+F +T+ +E LG+ FVQDNHS S G +RGLHFQ
Sbjct: 7 QVAGVKLIEPKVFGDHRGFFMETFQKDRYQEVLGIDVDFVQDNHSRSSH-GVLRGLHFQT 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G ++D+ VDIR +SPT+ WV + +S N Q+++P G AHGF+ +
Sbjct: 66 A-KPQGKLVRVVRGEVYDVVVDIRPDSPTFKKWVGVYLSEENKNQLWVPPGLAHGFVVVS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + YK TD+Y +++ + W D + I WP+ + P +S KD L ++
Sbjct: 125 ESADFEYKCTDYYDPSNEACLLWNDPEVGIEWPISE---PLLSPKDLQGKLLREL 176
>gi|302348457|ref|YP_003816095.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidilobus saccharovorans
345-15]
gi|302328869|gb|ADL19064.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidilobus saccharovorans
345-15]
Length = 185
Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats.
Identities = 74/175 (42%), Positives = 111/175 (63%), Gaps = 4/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V ++K + F D RG+F +T+ +K ++ G++ VQ+N S+S G IRGLH+QR
Sbjct: 8 LDIPDVVLVKPKVFRDQRGYFMETFVAKAFEQAGVKFNVVQENQSYS-RRGVIRGLHYQR 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AQAK+VR + G I+D+AVDIR SPT+G V++ +S +NG +YIP GFAHGF L
Sbjct: 67 GQWAQAKIVRAVKGEIYDVAVDIRPWSPTFGKHVAVRLSEDNGYALYIPRGFAHGFQVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
V+Y V + Y+ + + G+ W D I I+WP+ P +SEKD P L +
Sbjct: 127 EYAIVVYLVDNDYAPQAEGGIRWDDSDIAISWPISG---PVLSEKDARWPTLREA 178
>gi|254973885|ref|ZP_05270357.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile
QCD-66c26]
gi|255091270|ref|ZP_05320748.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile CIP
107932]
gi|255312929|ref|ZP_05354512.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile
QCD-76w55]
gi|255515688|ref|ZP_05383364.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile
QCD-97b34]
gi|255648782|ref|ZP_05395684.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile
QCD-37x79]
gi|260682002|ref|YP_003213287.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile CD196]
gi|260685600|ref|YP_003216733.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile R20291]
gi|306518899|ref|ZP_07405246.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile
QCD-32g58]
gi|260208165|emb|CBA60479.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile CD196]
gi|260211616|emb|CBE01848.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile R20291]
Length = 185
Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats.
Identities = 73/174 (41%), Positives = 97/174 (55%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ F D RG+F ++Y+ K E GL F+QDN S S G +RG+HFQ
Sbjct: 10 KIEGLYIVEPNVFCDERGYFMESYNKKDFIEQGLDMCFIQDNES-SSRKGVLRGMHFQVR 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR G +FD+AVD+R++S T+G W + +S N Q YIP GFAHGF+ L
Sbjct: 69 -YPQGKLVRVTEGEVFDVAVDLRKDSQTFGKWEGVILSDKNKKQFYIPEGFAHGFLVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK T++Y E + G W DK I I WPL +SEKD+ I
Sbjct: 128 KAVFNYKCTNYYYPEFEHGFIWNDKQISIEWPLKGIEEIFLSEKDKKQKSFKDI 181
>gi|326798979|ref|YP_004316798.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingobacterium sp. 21]
gi|326549743|gb|ADZ78128.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingobacterium sp. 21]
Length = 182
Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats.
Identities = 82/177 (46%), Positives = 112/177 (63%), Gaps = 2/177 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ + +ED+RG F +TY+ L +E G+ + FVQDN S S G +RGLH Q P
Sbjct: 8 IEGVVIIEPKIWEDNRGQFFETYNEALFRENGIDEKFVQDNQSVSCK-GALRGLHAQAGP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVR I G + D+AVDIR+NSPT+G +E+S N ++IP GF HGF+ LE N
Sbjct: 67 HAQGKLVRVIKGSVIDVAVDIRKNSPTFGQTFHIELSEANAKMLWIPVGFLHGFVALEEN 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
T YKVT Y ++ GV + D + +I WPL L +S+KD LP L I++PF
Sbjct: 127 TIFCYKVTGKYDKANEIGVRYNDPTFNIQWPLPQEEL-ILSDKDLQLPLLADINNPF 182
>gi|288869616|ref|ZP_05975254.2| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanobrevibacter smithii
DSM 2374]
gi|288860621|gb|EFC92919.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanobrevibacter smithii
DSM 2374]
Length = 188
Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats.
Identities = 74/173 (42%), Positives = 103/173 (59%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + +++ + D+RG+F +TY+ K K+ G FVQDN S SF G +RGLH Q
Sbjct: 13 DIEGMFVVEPAVYGDNRGYFMETYNEKDFKDAGYDLTFVQDNQSQSFK-GVLRGLHLQLK 71
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR I G +FD+ VD+R +SPTYG W +SA N Q+YIP FAHGF+ L
Sbjct: 72 -YPQGKLVRVIKGEVFDVGVDLRADSPTYGKWYGEILSAENKKQLYIPPKFAHGFVVLSD 130
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T+FY E + G+ W D I + WPL ++S+KD+ L +
Sbjct: 131 EAEFVYKCTEFYHGEDEGGIMWNDPDIAVEWPLGGIDEITLSDKDKKWKTLKE 183
>gi|209883703|ref|YP_002287560.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oligotropha carboxidovorans
OM5]
gi|209871899|gb|ACI91695.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oligotropha carboxidovorans
OM5]
Length = 181
Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats.
Identities = 72/174 (41%), Positives = 106/174 (60%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V +++ + F D+RG+F ++++++ +E + FVQDN S S G +RGLH+Q
Sbjct: 8 LDGVVVIEPQVFTDARGYFFESFNAERFRERVARDVTFVQDNQSLS-RKGVVRGLHYQIA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVR +AG IFD+AVDIR+ S +G W +SA N Q+++P G+AHGF L
Sbjct: 67 PKAQGKLVRALAGEIFDVAVDIRKGSKQFGQWFGTILSAENKKQLWVPEGYAHGFQVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
EV+YK TDF+S H+ + W D ++ I WPL + VS KD P L
Sbjct: 127 TAEVLYKTTDFWSAAHERAIRWDDPTLAIDWPLKEGC--IVSGKDGEAPLLADA 178
>gi|15679778|ref|NP_276896.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanothermobacter
thermautotrophicus str. Delta H]
gi|74548927|sp|O27818|RMLC_METTH RecName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; AltName:
Full=Thymidine diphospho-4-keto-rhamnose 3,5-epimerase;
AltName: Full=dTDP-4-keto-6-deoxyglucose 3,5-epimerase;
AltName: Full=dTDP-6-deoxy-D-xylo-4-hexulose
3,5-epimerase; AltName: Full=dTDP-L-rhamnose synthase
gi|12084451|pdb|1EP0|A Chain A, High Resolution Crystal Structure Of
Dtdp-6-Deoxy-D-Xylo-4- Hexulose 3,5-Epimerase From
Methanobacterium Thermoautotrophicum
gi|12084452|pdb|1EPZ|A Chain A, Crystal Structure Of Dtdp-6-Deoxy-D-Xylo-4-Hexuloase 3,5-
Epimerase From Methanobacterium Thermoautotrophicum With
Bound Ligand.
gi|2622921|gb|AAB86256.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 185
Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats.
Identities = 77/173 (44%), Positives = 105/173 (60%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+++ I++ + D RG+F +T++ + +E GL+ FVQDN S S G +RGLHFQR
Sbjct: 10 SLDGAIIIEPEVYTDERGYFMETFNEAIFQENGLEVRFVQDNESMSVR-GVLRGLHFQRE 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR I G IFD+AVD+R+NS TYG W + +S N + +IP GFAHGF+ L
Sbjct: 69 -KPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
V YK T+ Y E+DSG+ W D I I WPL +SEKD+N L +
Sbjct: 128 ECIVNYKCTELYHPEYDSGIPWDDPDIGIDWPLEMVDDLIISEKDRNWKPLRE 180
>gi|253567134|ref|ZP_04844585.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Bacteroides sp. 3_2_5]
gi|251944258|gb|EES84767.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Bacteroides sp. 3_2_5]
Length = 192
Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats.
Identities = 76/181 (41%), Positives = 109/181 (60%), Gaps = 2/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + IL+ R F+D RG+F ++++ + Q FVQDN S S G IRGLHFQ+P
Sbjct: 7 SIEGLVILEPRLFQDDRGYFFESFNQGEFESNVCQTTFVQDNESKSS-YGVIRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR I G + D+AVDIR+ SPT+G VS+E++ +N Q +IP GFAHGF L
Sbjct: 66 PFAQSKLVRVIKGAVLDVAVDIRKGSPTFGKHVSVELTEDNHRQFFIPRGFAHGFSVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +FY E + +AW D ++I W + T +S+KD + L + F+Y
Sbjct: 126 EVIFQYKCDNFYHPEAEGAIAWNDPDLNIDWRVP-TRKVILSDKDTSHKCLGGVLDLFDY 184
Query: 182 D 182
Sbjct: 185 K 185
>gi|67920202|ref|ZP_00513722.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Crocosphaera watsonii WH
8501]
gi|67857686|gb|EAM52925.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Crocosphaera watsonii WH
8501]
Length = 181
Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I++ R F D RG+F ++Y+ K E G+ FVQDNHS S + +RGLH+Q
Sbjct: 7 KIPDVVIIEPRIFGDDRGFFYESYNHKAFTEATGISRNFVQDNHSKS-ERNVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G + D+AVDIR++SPT+G WVS +SA N Q ++P GFAHGF+
Sbjct: 66 Q-QTQGKLVRVVTGEVLDVAVDIRKSSPTFGQWVSCLLSAENKRQFWVPEGFAHGFVVSS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ EH+ + W D + I W L P +S+KDQ Q +
Sbjct: 125 DAAEFLYKTTDYYAPEHERSILWNDPDLAIDWQLKGE--PKLSKKDQEGLPFKQAE 178
>gi|298485660|ref|ZP_07003739.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298159686|gb|EFI00728.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 181
Score = 256 bits (656), Expect = 8e-67, Method: Composition-based stats.
Identities = 75/177 (42%), Positives = 111/177 (62%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + + F D RG+F ++++ K +E+ G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVIVFEPKVFGDDRGFFFESFNQKAFEEVVGRPVTFVQDNHSRSVK-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR AG +FD+AVD+R++SPT+G WV L ++A N Q++IP GFAHGF+ L
Sbjct: 65 IQQP-QGKLVRVTAGEVFDVAVDLRKSSPTFGKWVGLHLTAENKKQLWIPEGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+++ EH+ +AW D ++ I WP + PS+S KDQ +
Sbjct: 124 SESAEFLYKTTDYWAPEHERSLAWNDVTVGIDWPFSEA--PSLSAKDQKAVVFEDAE 178
>gi|229016571|ref|ZP_04173511.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH1273]
gi|229022778|ref|ZP_04179302.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH1272]
gi|228738590|gb|EEL89062.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH1272]
gi|228744747|gb|EEL94809.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH1273]
Length = 181
Score = 256 bits (656), Expect = 9e-67, Method: Composition-based stats.
Identities = 82/178 (46%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDERGFFTESYNKKVLETLGITYSFVQDNVSYSAQAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R+ SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKESPTFKQWKGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS +HDSG+ W+DK + I WP+ + P +S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSAQHDSGLLWEDKELAIPWPVTN---PILSDKDRILPSLQEYEDSF 181
>gi|222445611|ref|ZP_03608126.1| hypothetical protein METSMIALI_01251 [Methanobrevibacter smithii
DSM 2375]
gi|222435176|gb|EEE42341.1| hypothetical protein METSMIALI_01251 [Methanobrevibacter smithii
DSM 2375]
Length = 188
Score = 256 bits (656), Expect = 9e-67, Method: Composition-based stats.
Identities = 73/173 (42%), Positives = 102/173 (58%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + +++ + D+RG+F +TY+ K+ G FVQDN S SF G +RGLH Q
Sbjct: 13 DIEGMFVVEPAVYGDNRGYFMETYNENDFKKAGYDLTFVQDNQSQSFK-GVLRGLHLQLK 71
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR I G +FD+ VD+R +SPTYG W +SA N Q+YIP FAHGF+ L
Sbjct: 72 -YPQGKLVRVIKGEVFDVGVDLRADSPTYGKWHGEILSAENKKQLYIPPKFAHGFVVLSD 130
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T+FY E + G+ W D I + WPL ++S+KD+ L +
Sbjct: 131 EAEFVYKCTEFYHGEDEGGIMWNDPDIAVEWPLEGIDEITLSDKDKKWKSLKE 183
>gi|331004824|ref|ZP_08328242.1| dTDP-4-dehydrorhamnose 3,5-epimerase [gamma proteobacterium
IMCC1989]
gi|330421355|gb|EGG95603.1| dTDP-4-dehydrorhamnose 3,5-epimerase [gamma proteobacterium
IMCC1989]
Length = 180
Score = 256 bits (656), Expect = 9e-67, Method: Composition-based stats.
Identities = 76/177 (42%), Positives = 106/177 (59%), Gaps = 6/177 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++ V +++ F D RG+F +T+ K +E G FVQDNHS S G +RGLHFQ+
Sbjct: 7 KLSGVLVIEPAVFGDERGFFLETFQLKRYQEHLGENIQFVQDNHSRSPR-GVLRGLHFQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G ++D+AVDI +S TYG + + +SA N Q++IP G+AHGF+ L
Sbjct: 66 T-KPQGKLVRVVTGEVYDVAVDINPHSSTYGQYEGVVLSAKNKKQLWIPPGYAHGFLVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ + YK TD+Y + GV W D I+I WPL D +S+KD LPFL I S
Sbjct: 125 DSADFEYKCTDYYDPADEGGVMWNDPEINIPWPLTD---VQLSDKDTMLPFLKDIKS 178
>gi|303252480|ref|ZP_07338644.1| hypothetical protein APP2_1456 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307248515|ref|ZP_07530533.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|302648681|gb|EFL78873.1| hypothetical protein APP2_1456 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306854991|gb|EFM87176.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
Length = 180
Score = 256 bits (656), Expect = 9e-67, Method: Composition-based stats.
Identities = 70/174 (40%), Positives = 103/174 (59%), Gaps = 4/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI V++L+ + F D RG+F + + + ++ FVQ+NHS S G +RGLH+Q
Sbjct: 7 NIPDVKLLEPQVFGDERGFFMEIFRDEWFRQYVADRTFVQENHSKSIK-GVLRGLHYQTE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 N-TQGKLVRVVQGSVFDVAVDLRKSSPTFGQWVGEVLSAENKRQLWVPEGFAHGFYVLTE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YK TD+Y+ + + + W D ++ I W L PS+S KD LN+
Sbjct: 125 TAEFTYKCTDYYNPKAEHSLIWNDPTVAINWNL--GGAPSLSAKDLAGKVLNEA 176
>gi|159027477|emb|CAO89442.1| rfbC [Microcystis aeruginosa PCC 7806]
Length = 181
Score = 256 bits (656), Expect = 9e-67, Method: Composition-based stats.
Identities = 72/176 (40%), Positives = 107/176 (60%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I++ + + D RG+F ++++ K +E G+ FVQDNHS S +RGLH+Q
Sbjct: 7 EIPDVLIIEPQVYGDDRGFFLESFNQKDFREKTGVNTTFVQDNHSMSLK-NVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ Q KLVR + G +FD+AVD R++SPT+G WVS +SA N ++P GFAHGF+ L
Sbjct: 66 -PHPQGKLVRVVNGSVFDVAVDARQSSPTFGQWVSCVLSAENKRIFWVPEGFAHGFIVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK T++Y +++ +AW D + I WPL I P +S KDQ ++
Sbjct: 125 ERAEFLYKTTNYYYPQYEKTIAWNDADLGIDWPLE--IPPILSPKDQAGQPFKSVE 178
>gi|241668047|ref|ZP_04755625.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Francisella philomiragia
subsp. philomiragia ATCC 25015]
gi|254876582|ref|ZP_05249292.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Francisella philomiragia
subsp. philomiragia ATCC 25015]
gi|254842603|gb|EET21017.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Francisella philomiragia
subsp. philomiragia ATCC 25015]
Length = 190
Score = 256 bits (656), Expect = 9e-67, Method: Composition-based stats.
Identities = 83/181 (45%), Positives = 113/181 (62%), Gaps = 3/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKL-LKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
NI V I + + D RG+F +T+ LG + F QDN S S G +RGLH+Q
Sbjct: 7 NIEGVVICEPKVHGDERGYFVETFREDKLFDFLGYKINFCQDNESKSS-YGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVR I GR+ D+AVDIR+ SPT+G V++E+SA+N Q+ +P GFAHGF+ LE
Sbjct: 66 PPHAQTKLVRVIQGRVLDVAVDIRKGSPTFGQHVAVELSADNKRQLLVPRGFAHGFVVLE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T YKV +YS E D G+A+ D+SI I W + L +S KD+ P LN+ F+
Sbjct: 126 NDTIFSYKVDSYYSPECDRGIAFDDESIAINWQVPSDKL-KLSAKDKVQPKLNETVDLFD 184
Query: 181 Y 181
Y
Sbjct: 185 Y 185
>gi|207728136|ref|YP_002256530.1| dtdp-4-dehydrorhamnose 3,5-epimerase protein [Ralstonia
solanacearum MolK2]
gi|206591381|emb|CAQ56993.1| dtdp-4-dehydrorhamnose 3,5-epimerase protein [Ralstonia
solanacearum MolK2]
Length = 183
Score = 256 bits (656), Expect = 9e-67, Method: Composition-based stats.
Identities = 71/175 (40%), Positives = 107/175 (61%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++++++ ++ G++ FVQDNHS S G +RGLH+Q
Sbjct: 10 IPEVLILEPKVFGDDRGFFFESFNARTFEQATGVKRTFVQDNHSRSAR-GVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G +FD+AVD+R+ SPT+G WV + +SA N Q+++P GFAHGF+
Sbjct: 69 -HPQGKLVRVTVGEVFDVAVDLRKRSPTFGKWVGVTLSAENKRQLWVPEGFAHGFVVTSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD++ EH+ + W D + I WP+ T P ++ KD L D
Sbjct: 128 YAEFLYKTTDYWYAEHERSIVWNDPDLGIEWPVQGT--PILAAKDAAGARLAGAD 180
>gi|166031255|ref|ZP_02234084.1| hypothetical protein DORFOR_00942 [Dorea formicigenerans ATCC
27755]
gi|166029102|gb|EDR47859.1| hypothetical protein DORFOR_00942 [Dorea formicigenerans ATCC
27755]
Length = 226
Score = 256 bits (656), Expect = 9e-67, Method: Composition-based stats.
Identities = 76/189 (40%), Positives = 104/189 (55%), Gaps = 18/189 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + +++ D+RG+F +TY+ K ++E GL FVQDN S S G +RGLHFQ+
Sbjct: 36 GIKGLCVIEPTVHGDARGYFMETYNQKDMEEAGLTMQFVQDNQSCS-TKGVLRGLHFQKE 94
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R +S TYG W +E++ N Q YIP GFAHGF+ L
Sbjct: 95 -FPQGKLVRVVKGSVFDVAVDLRSDSETYGKWFGVELTEENKKQFYIPEGFAHGFLVLSE 153
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YK TDFY + G+AW D I + WP L D ++S+K
Sbjct: 154 IAEFCYKCTDFYHPGDEGGLAWNDPEIGVEWPQLVGEYKGNASAEGYHLEDGTALNLSDK 213
Query: 166 DQNLPFLNQ 174
DQ L
Sbjct: 214 DQLWVGLKD 222
>gi|325131106|gb|EGC53827.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
OX99.30304]
gi|325137129|gb|EGC59724.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis M0579]
gi|325201248|gb|ADY96702.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
M01-240149]
gi|325207107|gb|ADZ02559.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
NZ-05/33]
Length = 185
Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats.
Identities = 74/174 (42%), Positives = 100/174 (57%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ KE FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDGWFKENIADCSFVQENHSKSGK-GVLRGLHYQTEN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L
Sbjct: 67 -TQGKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFYVLSDT 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
TE+ YK TD+Y E + + W D +I I WPL P +S KD Q +
Sbjct: 126 TELTYKCTDYYKPEAEQVLIWNDPAIGIGWPL--QTAPLLSPKDLAGKTWAQAE 177
>gi|329569822|gb|EGG51581.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecalis TX1467]
Length = 175
Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats.
Identities = 74/172 (43%), Positives = 104/172 (60%), Gaps = 3/172 (1%)
Query: 12 RKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
F + RG+F+++YS E GL FVQDNHS S + G +RGLHFQ+ AQ KL+R
Sbjct: 2 DVFGNHRGFFTESYSKAKFAEHGLDFDFVQDNHSLSTEAGVLRGLHFQKGEAAQTKLIRV 61
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
+ G + D+ VDIR+ SPTYG W +S +N Q+ +P GFAHGF+TL N +YK +
Sbjct: 62 VTGAVLDVIVDIRKGSPTYGQWEGYILSEHNHRQLLVPKGFAHGFVTLTPNVNFMYKCDN 121
Query: 132 FYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS--PFEY 181
+Y+ D G+A+ D ++ I WP+ SEKDQ P L + ++ PF Y
Sbjct: 122 YYNAAADGGIAFNDPALAIDWPIAPE-KAITSEKDQKHPTLKEFEAENPFIY 172
>gi|218767237|ref|YP_002341749.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis Z2491]
gi|121051245|emb|CAM07520.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis Z2491]
Length = 190
Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats.
Identities = 72/174 (41%), Positives = 103/174 (59%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCNRTFVQENHSKSGK-GVLRGLHYQTEN 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 72 -TQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFCVLGDA 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EV+YK TD+Y E + + W D ++ I WPL P +S KD Q +
Sbjct: 131 AEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPL--QTAPLLSPKDLAGKTWAQAE 182
>gi|114571007|ref|YP_757687.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Maricaulis maris MCS10]
gi|114341469|gb|ABI66749.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Maricaulis maris MCS10]
Length = 188
Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats.
Identities = 85/181 (46%), Positives = 112/181 (61%), Gaps = 1/181 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V ++ R+FED RG+FS+TY+ + E G+ FVQDNHS S GT+RGLH+Q
Sbjct: 6 LDIPDVIVVTPRRFEDDRGYFSETYNETVFAEAGIGARFVQDNHSCSLQAGTVRGLHYQS 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQ KLVR +G I D+ VD+RR SP +G V EISA G QI++P GF HGF+TL+
Sbjct: 66 LPHAQGKLVRVTSGAIIDVVVDVRRGSPHFGQHVKAEISAEKGSQIWVPAGFLHGFITLQ 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NT V YKVTDFY D V W D ++ I W + +S+KD + SPF
Sbjct: 126 PNTHVTYKVTDFYDAGCDGSVLWSDPALGIDWGI-GQSDAILSDKDAEAQSWQEFSSPFL 184
Query: 181 Y 181
Y
Sbjct: 185 Y 185
>gi|193214636|ref|YP_001995835.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chloroherpeton thalassium
ATCC 35110]
gi|193088113|gb|ACF13388.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chloroherpeton thalassium
ATCC 35110]
Length = 183
Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats.
Identities = 74/184 (40%), Positives = 103/184 (55%), Gaps = 7/184 (3%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
MNI V I++ + F D RG+F ++++ + L +F QDN S S G +RG
Sbjct: 1 MNIIETPLPGVLIVEPKIFGDERGYFYESFNLAAFSKHNLPTLFWQDNISRSVK-GVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q PYAQ KLVR G +FD+AVD+R+NSPT+G W L +SA N Q++IP GFAHG
Sbjct: 60 LHYQLNPYAQGKLVRVSEGEVFDVAVDLRKNSPTFGKWFGLTLSAENKKQLWIPPGFAHG 119
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F YK T Y+ + + W D + I WP LD +SEKD+N ++
Sbjct: 120 FCVTSDFAVFNYKATTKYAPSSERAILWNDAELGIEWPKLD-CDWILSEKDKNGTPFSKA 178
Query: 176 DSPF 179
+ F
Sbjct: 179 EMNF 182
>gi|218767221|ref|YP_002341733.1| dTDP-D-glucose 4,6-dehydratase [Neisseria meningitidis Z2491]
gi|121051229|emb|CAM07502.1| dTDP-D-glucose 4,6-dehydratase [Neisseria meningitidis Z2491]
Length = 184
Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCNRTFVQENHSKSGK-GVLRGLHYQTEN 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 72 -TQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFCVLGDA 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
EV+YK TD+Y E + + W D ++ I WPL P +S KD L +
Sbjct: 131 AEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPL--QTAPLLSPKDLAGKVLAEA 181
>gi|209696413|ref|YP_002264344.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Aliivibrio
salmonicida LFI1238]
gi|208010367|emb|CAQ80705.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Aliivibrio
salmonicida LFI1238]
Length = 184
Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats.
Identities = 77/178 (43%), Positives = 108/178 (60%), Gaps = 6/178 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ F D RG+F +T++ +EL G FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVKIIEPSVFGDERGFFMETWNQAKFEELVTGKPTRFVQDNHSKS-KKGILRGLHYQT 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR ++G +FD+AVDIR+ SPT+G WV +SA N Q+++P GFAHGF
Sbjct: 67 EN-TQGKLVRVVSGEVFDVAVDIRKGSPTFGQWVGEYLSAENKRQLWVPKGFAHGFYVTS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
E +YK TD+Y+ + + + W D+S+ I WPL +P +SEKD N +I S
Sbjct: 126 DEAEFVYKCTDYYNPKVEISLFWADESLAINWPLSG--IPMLSEKDINGIKFEKIISN 181
>gi|75759809|ref|ZP_00739886.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|218896252|ref|YP_002444663.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus G9842]
gi|228899900|ref|ZP_04064144.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis IBL
4222]
gi|228964266|ref|ZP_04125385.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|74492709|gb|EAO55848.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|218543340|gb|ACK95734.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus G9842]
gi|228795363|gb|EEM42851.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228859740|gb|EEN04156.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis IBL
4222]
Length = 181
Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats.
Identities = 84/175 (48%), Positives = 121/175 (69%), Gaps = 3/175 (1%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
++L+ R F D RG+FS++Y+ ++L+ LG+ FVQDN S+S GTIRGLHFQ+ P A
Sbjct: 10 DAKLLEPRLFGDERGFFSESYNKQVLETLGITYSFVQDNVSYSAKAGTIRGLHFQKKPKA 69
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KL++ + G I+D+ VD+R+ SPT+ W +SA+N Q+ +P GFAHGF TL +T
Sbjct: 70 QTKLIQVMQGAIYDVIVDLRKKSPTFKQWKGYILSADNHRQLLVPKGFAHGFCTLVPHTI 129
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
V+YKV ++YS EHDSG+ W+DK + I WP+ D P +S+KDQ LP L + + F
Sbjct: 130 VMYKVDEYYSAEHDSGLLWEDKDLAIPWPVTD---PILSDKDQILPLLEEYEDSF 181
>gi|332525494|ref|ZP_08401652.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Rubrivivax
benzoatilyticus JA2]
gi|332108761|gb|EGJ09985.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Rubrivivax
benzoatilyticus JA2]
Length = 191
Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats.
Identities = 81/180 (45%), Positives = 109/180 (60%), Gaps = 8/180 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSS----KLLKELGLQDV--FVQDNHSFSFDCGTIRGL 56
+ V I++ + D RGWF +T++ + L ELG FVQDNHS S G +RGL
Sbjct: 8 LPGVLIVEPAVYGDERGWFMETFNEPRWRRALDELGEPQPRPFVQDNHSCS-HAGVLRGL 66
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H+Q PP+AQ KLVR + GR FD+AVDIRR S +G W +E+ A N QI+IP GFAHGF
Sbjct: 67 HYQLPPHAQGKLVRVVKGRAFDVAVDIRRGSAHFGQWFGVELDAVNRRQIWIPEGFAHGF 126
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP-LLDTILPSVSEKDQNLPFLNQI 175
+ LE +T+V+YK TD Y+ + G+ W D + I WP L + P +SE+D L
Sbjct: 127 LALEDDTQVLYKTTDVYAAPCEGGIRWDDPDLAIRWPSLPNGAPPRLSERDARAAALKDA 186
>gi|172059823|ref|YP_001807475.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria
MC40-6]
gi|171992340|gb|ACB63259.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria
MC40-6]
Length = 183
Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 110/175 (62%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V++++ + F D+RG+F ++++ + E G FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKLIEPKVFGDARGYFYESFNGREFAEHIGPGIEFVQDNHSRSAK-GVLRGLHYQVQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVDIRR+SP +G WV + +SA+N Q+++P GFAHGF+ L
Sbjct: 69 -HAQGKLVRVVEGEVFDVAVDIRRSSPDFGKWVGVTLSADNHRQLWVPPGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD++ EH+ + W D I I WP+ P ++ KD L++ +
Sbjct: 128 AAQFLYKTTDYWYPEHERCIVWDDPEIGIEWPI--DAAPVLAPKDAAGKRLSEAE 180
>gi|251790437|ref|YP_003005158.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dickeya zeae Ech1591]
gi|247539058|gb|ACT07679.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dickeya zeae Ech1591]
Length = 178
Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats.
Identities = 71/174 (40%), Positives = 100/174 (57%), Gaps = 6/174 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+I++ + F D+RG+F +T+ K +E+ + FVQDNHS S G +RGLHFQ
Sbjct: 8 IQGVKIIQPKVFGDARGFFLETFEKKRYQEMLDIDLDFVQDNHSRSAR-GVLRGLHFQTV 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+ VDIR +S TYG W + +S N Q +IP G AHGF+ L
Sbjct: 67 NP-QGKLVRVVRGEVFDVVVDIRPDSATYGRWEGVLLSEENKAQFWIPPGLAHGFVVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK TD+Y+ H+ + W D I I WP+ P +SEKD ++
Sbjct: 126 LADFEYKCTDYYNPAHEGCLLWNDPDIGIDWPI---ASPLLSEKDSKGKTFKEL 176
>gi|255305246|ref|ZP_05349418.1| dTDP-glucose 4,6-dehydratase [Clostridium difficile ATCC 43255]
Length = 525
Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats.
Identities = 73/172 (42%), Positives = 98/172 (56%), Gaps = 2/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ F D RG+F ++Y+ K E GL F+QDN S S G +RG+HFQ
Sbjct: 10 KIEGLYIVEPNVFYDERGYFMESYNKKDFIEQGLDMCFIQDNES-SSRKGVLRGMHFQVK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR G +FD+AVD+R++S T+G W + +S N Q YIP GFAHGF+ L
Sbjct: 69 -YPQGKLVRVTEGEVFDVAVDLRKDSQTFGKWEGVILSDKNKKQFYIPEGFAHGFLVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
YK T++Y E ++G W DK I I WPL +SEKD+ L
Sbjct: 128 KAVFSYKCTNYYYPEFENGFIWNDKQISIEWPLKGIEEIFLSEKDKKQKVLK 179
>gi|198284962|ref|YP_002221283.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218666255|ref|YP_002427647.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198249483|gb|ACH85076.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218518468|gb|ACK79054.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 182
Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats.
Identities = 70/177 (39%), Positives = 106/177 (59%), Gaps = 2/177 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V ++ + F D RG+F ++++ + GL FVQDNHS S G +RGLH+Q
Sbjct: 6 LSIPEVLLIAPKVFGDVRGFFMESWNRRAFAAAGLDLDFVQDNHSRS-QQGVLRGLHYQI 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR ++G +FD+AVD+RR+SP +G W +SA N +++P GFAHGF L
Sbjct: 65 HQP-QGKLVRVVSGAVFDVAVDLRRSSPHFGRWAGATLSAENQQMLWVPPGFAHGFYVLS 123
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ + +YK T+FY+ E + V W D I I WPL+D P ++ KD L+ ++
Sbjct: 124 ESADFLYKTTEFYAPEAERCVIWNDPDIAIDWPLVDGKPPLLATKDAAGLPLSASET 180
>gi|197124807|ref|YP_002136758.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anaeromyxobacter sp. K]
gi|196174656|gb|ACG75629.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anaeromyxobacter sp. K]
Length = 188
Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats.
Identities = 70/174 (40%), Positives = 101/174 (58%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ + +++ R F D+RG+F ++++ K +G FVQDNHS S G +RGLH+Q
Sbjct: 8 LPGLLVVEPRVFGDARGYFFESFNQKAFDAAVGRHVEFVQDNHSLSGR-GVLRGLHYQL- 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLVR G +FD+AVD+RR SPT+G W +SA N Q++IP GFAHGF+
Sbjct: 66 PNPQGKLVRVTRGEVFDVAVDLRRGSPTFGRWAGEILSAENKRQLWIPEGFAHGFLVRSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK+TD++ EH+ + W D + I WP + P VS KD +
Sbjct: 126 EAEFVYKITDYWHPEHEHCIRWDDPVLGIDWP-TGGVRPLVSAKDAAGRPFREA 178
>gi|253578777|ref|ZP_04856048.1| sugar biosynthesis protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849720|gb|EES77679.1| sugar biosynthesis protein [Ruminococcus sp. 5_1_39BFAA]
Length = 202
Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats.
Identities = 78/189 (41%), Positives = 103/189 (54%), Gaps = 18/189 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + +++ D+RG+F +TY+ K +KE G+ FVQDN S S G +RGLHFQ+
Sbjct: 12 GIEGLCVIEPAVHGDARGYFMETYNEKDMKEAGIDIHFVQDNQSMS-TKGVLRGLHFQKQ 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G +FD+AVD+R NS TYG W + +SA N Q IP GFAHGF+ L
Sbjct: 71 -YPQCKLVRAVRGTVFDVAVDLRSNSETYGKWYGVTLSAENKKQFLIPEGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YKV DF+ + G+AW D I I WP L D ++S+K
Sbjct: 130 EAEFCYKVNDFWHPNDEGGMAWNDPEIGIEWPELKGEYKGSASAEGYTLKDGTALNLSDK 189
Query: 166 DQNLPFLNQ 174
DQ L
Sbjct: 190 DQKWLGLKD 198
>gi|126464817|ref|YP_001041793.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides ATCC
17029]
gi|221634575|ref|YP_002523263.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides
KD131]
gi|126106632|gb|ABN79157.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides ATCC
17029]
gi|221163448|gb|ACM04410.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides
KD131]
Length = 187
Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats.
Identities = 80/182 (43%), Positives = 108/182 (59%), Gaps = 1/182 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V IL R F D+RG F + ++ L+ LG+ FVQDN S S GT+RGLH+Q P
Sbjct: 7 ELPGVLILTPRVFGDARGSFCEAWNRATLQGLGIDLDFVQDNQSISAPVGTVRGLHYQAP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVR G I D+AVD+R SPTYG WV +E++A N Q+ +P GF HGF+T E
Sbjct: 67 PHAQDKLVRVGHGAILDVAVDVRVGSPTYGRWVGVELTAGNARQLLVPKGFLHGFVTREP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+T V+YK TD Y+ + D V + D + I W + D +S+KD P SPF
Sbjct: 127 DTVVLYKTTDVYAPDCDGAVHFADPDLGIDWGI-DPASAVLSDKDARAPRFADWTSPFSI 185
Query: 182 DG 183
+
Sbjct: 186 EA 187
>gi|253996731|ref|YP_003048795.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylotenera mobilis JLW8]
gi|253983410|gb|ACT48268.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylotenera mobilis JLW8]
Length = 186
Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats.
Identities = 75/178 (42%), Positives = 113/178 (63%), Gaps = 6/178 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + + D RG+F ++++ + ++L G++ FVQDNHS S +RGLH+Q
Sbjct: 8 IPDVLILEPQVYGDERGFFFESFNQQKFEQLTGVKTQFVQDNHSKSA-ANVLRGLHYQIS 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR +AG +FD+AVD+R++S T+G WV +S++N Q+++P GFAHGF+ L+
Sbjct: 67 QP-QGKLVRVVAGEVFDVAVDLRKHSQTFGQWVGAILSSDNKRQMWVPEGFAHGFLVLKD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP---LLDTILPSVSEKDQNLPFLNQID 176
NTE +YK TD+Y+ +H+ + W D I I WP L +P +S KDQ L D
Sbjct: 126 NTEFLYKTTDYYAPQHERCIRWDDADIGIEWPTASLAAHAIPVLSAKDQLGLRLVDAD 183
>gi|206968279|ref|ZP_03229235.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH1134]
gi|229177734|ref|ZP_04305108.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus 172560W]
gi|229189408|ref|ZP_04316425.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus ATCC 10876]
gi|206737199|gb|EDZ54346.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH1134]
gi|228593999|gb|EEK51801.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus ATCC 10876]
gi|228605698|gb|EEK63145.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus 172560W]
Length = 181
Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats.
Identities = 85/178 (47%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+FS++Y+ ++L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDDRGFFSESYNKQVLETLGITYSFVQDNVSYSAKAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R+ SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKKSPTFKQWKGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS EHDSG+ W+DK + I WP+ D P +S+KDQ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSAEHDSGLLWEDKDLAIPWPVTD---PILSDKDQILPLLEEYEDSF 181
>gi|86147256|ref|ZP_01065571.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Vibrio sp. MED222]
gi|85834971|gb|EAQ53114.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Vibrio sp. MED222]
Length = 181
Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats.
Identities = 75/175 (42%), Positives = 111/175 (63%), Gaps = 6/175 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ F D RG+F +T+S ++L G FVQDNHS S G +RGLH+Q
Sbjct: 8 IRDVKIIEPSVFGDERGFFMETWSQDKFEKLVTGKATSFVQDNHSKS-KKGILRGLHYQT 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR ++G +FD+AVDIR++SPT+G WV +SA N Q+++P GFAHGF
Sbjct: 67 QN-TQGKLVRVVSGEVFDVAVDIRKDSPTFGQWVGELLSAENKRQLWVPEGFAHGFYVTS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ E + + W+D++++I WP+ P++SEKD +N+I
Sbjct: 126 EEAEFVYKCTDYYNPEAEHCLFWKDETVNIKWPIESP--PTLSEKDSIGKRINEI 178
>gi|116251392|ref|YP_767230.1| dTDP-rhamnose-3,5-epimerase [Rhizobium leguminosarum bv. viciae
3841]
gi|115256040|emb|CAK07121.1| putative dTDP-rhamnose-3,5-epimerase [Rhizobium leguminosarum bv.
viciae 3841]
Length = 192
Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats.
Identities = 85/179 (47%), Positives = 113/179 (63%), Gaps = 1/179 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + + +F D RG+FS+ + +E F+QDN S S GT+RGLHFQ PP
Sbjct: 8 IEGIVAITPPRFGDHRGYFSEVFKDAWFRENVADVTFIQDNESLSAQAGTVRGLHFQIPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVRC+AGRI D+ VDIR SP++G W+S E+S G Q++IP GFAHGF T+E N
Sbjct: 68 FAQGKLVRCLAGRIMDVVVDIREGSPSFGKWLSQELSPETGKQLWIPAGFAHGFATIEPN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ + YKVT YS +HD G+AW D I I WP + + S S+KD+ LP L + F Y
Sbjct: 128 SVISYKVTAPYSPQHDRGIAWNDPMIGIRWPFDERDMVS-SDKDKTLPRLADLPGHFSY 185
>gi|189500844|ref|YP_001960314.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium phaeobacteroides
BS1]
gi|189496285|gb|ACE04833.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium phaeobacteroides
BS1]
Length = 195
Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats.
Identities = 67/192 (34%), Positives = 113/192 (58%), Gaps = 3/192 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V I + + F D RG+F +++ + + Q FVQDN S S G +RGLHFQ+P
Sbjct: 7 SIPDVLIFEPKVFGDERGYFFESFRQDVFELHVGQVNFVQDNQSKS-KYGVLRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ Q+KLVR + G + D+AVDIR+ SP +G +V++++ + +++P GFAHGF+ L
Sbjct: 66 PFTQSKLVRVLDGCVIDVAVDIRKGSPWFGQYVAVKLDSAKNNMLWVPQGFAHGFVVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ YK ++Y+ ++D+G+ W D + I W + + VS+KD P L++ F Y
Sbjct: 126 DAVFAYKCDNYYAPDYDAGIRWNDPELAIDWTIPVADI-QVSQKDATQPLLDEA-YLFSY 183
Query: 182 DGLPLLSLNMER 193
+ ++ +R
Sbjct: 184 ESFKKEAVYPQR 195
>gi|209548787|ref|YP_002280704.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534543|gb|ACI54478.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 192
Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats.
Identities = 85/179 (47%), Positives = 114/179 (63%), Gaps = 1/179 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + + +F D RG+FS+ + +E FVQDN S S GT+RGLHFQ PP
Sbjct: 8 IEGIVAITPPRFGDHRGYFSEVFKDAWFRENVADVTFVQDNESLSAQAGTVRGLHFQIPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVRC+AGRI D+ VDIR SP++G W+S E+S G Q++IP GFAHGF+T+E N
Sbjct: 68 FAQGKLVRCLAGRIMDVVVDIRVGSPSFGKWLSQELSPETGKQLWIPAGFAHGFVTIEPN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ + YKVT YS +HD G+AW D I I WP + + S S+KD+ LP L + F +
Sbjct: 128 SVISYKVTAPYSPQHDRGIAWNDPMIGIRWPFDERDMVS-SDKDKTLPRLADLPGHFSF 185
>gi|229160276|ref|ZP_04288275.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus R309803]
gi|228623237|gb|EEK80064.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus R309803]
Length = 181
Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats.
Identities = 85/178 (47%), Positives = 125/178 (70%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N V++L+ R FED RG+F+++Y+ K+L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDVKLLEPRLFEDERGFFTESYNKKVLETLGIAYSFVQDNVSYSTRAGTIRGLHFQKK 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N ++ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFRQWKGYILSADNHRELLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS EHDSG+ W+DK + I WP+ + P +S+KDQ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSAEHDSGLLWEDKELAIPWPVTN---PILSDKDQVLPLLQEYEDSF 181
>gi|224539523|ref|ZP_03680062.1| hypothetical protein BACCELL_04428 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518861|gb|EEF87966.1| hypothetical protein BACCELL_04428 [Bacteroides cellulosilyticus
DSM 14838]
Length = 182
Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats.
Identities = 72/177 (40%), Positives = 109/177 (61%), Gaps = 2/177 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ F+D RG+F ++++ + +E + FVQDN S S G IRGLHFQ+PP
Sbjct: 8 IEGVVIIEPHLFKDERGYFFESFNQREFEEKVCKTTFVQDNESKSS-YGVIRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ+KLVR + G + D+AVDIR+ SPT+G V++E++ NN Q++IP GFAHGF L
Sbjct: 67 FAQSKLVRVVKGAVLDVAVDIRKGSPTFGKHVAVELTENNHCQLFIPRGFAHGFSVLSEE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
YK + Y+ E + +AW D + I W + + +SEKD+ L +++ F
Sbjct: 127 VIFQYKCDNKYAPESEGAIAWGDPDLRIDWRIPMDKV-LLSEKDKQHSNLKEVNWLF 182
>gi|153001414|ref|YP_001367095.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS185]
gi|151366032|gb|ABS09032.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS185]
Length = 185
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 71/177 (40%), Positives = 99/177 (55%), Gaps = 5/177 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ + F D RG+F +T+ ++ + G+ FVQDN S S G +RGLHFQ+
Sbjct: 7 KIKDLLIIEPKVFGDDRGFFYETFQNERYRAAGIDVEFVQDNRSRS-TKGVLRGLHFQKT 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLV G +FD+AVD+R S T+G ++ ++ N LQ Y+P GFAHGF L
Sbjct: 66 -KPQGKLVTVTDGEVFDVAVDLRPGSETFGQHETIILTGKNKLQFYVPPGFAHGFCVLSD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
+ YK TD+Y +SG+ W D S+ I WPL P +SEKD P L I
Sbjct: 125 TADFQYKCTDYYDPSDESGLLWNDPSLAIQWPLS---QPLLSEKDAVQPHLAAITHN 178
>gi|294669023|ref|ZP_06734109.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291309015|gb|EFE50258.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 185
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 71/173 (41%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K FVQ++HS S G +RGLH+Q
Sbjct: 13 IPEVKLLEPQVFGDARGFFMETFRDEWFKANVCDRTFVQESHSKSGK-GVLRGLHYQTEN 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G W +SA N Q+++P GFAHGF L
Sbjct: 72 -TQGKLVRVVVGEVFDVAVDMRKSSPTFGKWAGEILSAENKRQLWVPEGFAHGFYVLSDE 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ + + + W D S+ I WPL P++S KD LNQ
Sbjct: 131 AEFVYKCTDYYNPKAEHSLIWNDPSVGIEWPLQGE--PNLSPKDLAGRPLNQA 181
>gi|307320269|ref|ZP_07599688.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium meliloti AK83]
gi|306894148|gb|EFN24915.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium meliloti AK83]
Length = 194
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 92/187 (49%), Positives = 117/187 (62%), Gaps = 2/187 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ ++ V + + ED RG+FS+T++ + L E G+ FVQDNHSFS G +RGLH Q
Sbjct: 9 LGLDGVLEILPGRIEDERGFFSETWNERKLAEAGIALHFVQDNHSFSAAKGVLRGLHHQL 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVR I G IFD+AVDIRR SPT+ WV+ E+SA QI IP GF+HGF+TLE
Sbjct: 69 SPYAQDKLVRVIRGAIFDVAVDIRRGSPTFAQWVAAEVSARKWNQILIPKGFSHGFLTLE 128
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS-PF 179
NTEVIYKVT+ YS +D + + D I I WPL +S KD P L Q + F
Sbjct: 129 PNTEVIYKVTNPYSPAYDRSIRFDDPEIAIAWPLP-VAEFQLSGKDAAAPPLGQAELFNF 187
Query: 180 EYDGLPL 186
+G L
Sbjct: 188 PVEGARL 194
>gi|237737858|ref|ZP_04568339.1| dTDP-4-dehydrorhamnose reductase [Fusobacterium mortiferum ATCC
9817]
gi|229419738|gb|EEO34785.1| dTDP-4-dehydrorhamnose reductase [Fusobacterium mortiferum ATCC
9817]
Length = 470
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 75/189 (39%), Positives = 120/189 (63%), Gaps = 4/189 (2%)
Query: 4 NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPY 63
+ ++++K + F+D RG+F + ++ + K+LG+ + FVQDNHS S G +RGLHFQ +
Sbjct: 12 DEIKLIKPKIFQDERGFFLEFFNYEEFKKLGIDERFVQDNHSKS-KRGVLRGLHFQTK-H 69
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
Q KLVR I G I+DI VDIR+ S T+G W +E+++ + +YIP GFAHGF+TLE +T
Sbjct: 70 PQGKLVRVIKGAIYDIIVDIRKGSSTFGKWFGVELNSYDKKMLYIPKGFAHGFLTLEDDT 129
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS--VSEKDQNLPFLNQIDSPFEY 181
E+ YK DFY +++SG+ + DK +++ W L + + +SEKD+ + ++
Sbjct: 130 EIEYKCNDFYYPQYESGIMYDDKDLNVDWKLEEYRITELTLSEKDKKHQSFKEYTERYQG 189
Query: 182 DGLPLLSLN 190
D + L N
Sbjct: 190 DYVLLTGAN 198
>gi|221214408|ref|ZP_03587379.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans
CGD1]
gi|221165665|gb|EED98140.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans
CGD1]
Length = 183
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F ++++ + E FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPKVFGDARGYFYESFNGREFAEQVEPGVEFVQDNHSRSAK-GVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVDIRR+SP +G WV + +SA+N Q+++P GFAHGF+ L
Sbjct: 69 -HAQGKLVRVVEGEVFDVAVDIRRSSPNFGKWVGVTLSADNHRQLWVPPGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD++ EH+ + W D I I WP+ P ++ KD L + +
Sbjct: 128 AAQFLYKTTDYWYPEHERSILWNDPDIRIEWPI--DFEPLLAAKDAAGKRLAEAE 180
>gi|221200997|ref|ZP_03574037.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans
CGD2M]
gi|221206551|ref|ZP_03579564.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans
CGD2]
gi|221173860|gb|EEE06294.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans
CGD2]
gi|221178847|gb|EEE11254.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia multivorans
CGD2M]
Length = 183
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F ++++ + E FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPKVFGDARGYFYESFNGREFAEQVEPGVEFVQDNHSRSAK-GVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVDIRR+SP +G WV + +SA+N Q+++P GFAHGF+ L
Sbjct: 69 -HAQGKLVRVVEGEVFDVAVDIRRSSPNFGKWVGVTLSADNHWQLWVPPGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD++ EH+ + W D I I WP+ P ++ KD L + +
Sbjct: 128 AAQFLYKTTDYWYPEHERSIVWNDPDIGIEWPI--DFEPLLAAKDAAGKRLAEAE 180
>gi|148643368|ref|YP_001273881.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanobrevibacter smithii
ATCC 35061]
gi|148552385|gb|ABQ87513.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanobrevibacter smithii
ATCC 35061]
Length = 185
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 73/173 (42%), Positives = 102/173 (58%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + +++ + D+RG+F +TY+ K+ G FVQDN S SF G +RGLH Q
Sbjct: 10 DIEGMFVVEPAVYGDNRGYFMETYNENDFKKAGYDLTFVQDNQSQSFK-GVLRGLHLQLK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR I G +FD+ VD+R +SPTYG W +SA N Q+YIP FAHGF+ L
Sbjct: 69 -YPQGKLVRVIKGEVFDVGVDLRADSPTYGKWHGEILSAENKKQLYIPPKFAHGFVVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E +YK T+FY E + G+ W D I + WPL ++S+KD+ L +
Sbjct: 128 EAEFVYKCTEFYHGEDEGGIMWNDPDIAVEWPLEGIDEITLSDKDKKWKSLKE 180
>gi|167903953|ref|ZP_02491158.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
NCTC 13177]
Length = 174
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 69/174 (39%), Positives = 110/174 (63%), Gaps = 5/174 (2%)
Query: 4 NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRPP 62
V+I++ + F D+RG+F ++++++ E F+QDNHS S G +RGLH+Q
Sbjct: 2 PEVKIIEPKVFGDARGFFFESFNAREFAEQVDAGVEFIQDNHSRSAK-GVLRGLHYQIQ- 59
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVR + G +FD+AVDIR++SP +G WV + +SA+N Q+++P GFAHGF+ L
Sbjct: 60 HAQGKLVRVVEGEVFDVAVDIRKSSPNFGKWVGVVLSADNHRQLWVPPGFAHGFVVLSDA 119
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD++ E + +AW D +I I WP+ D P ++ KD L + +
Sbjct: 120 AQFLYKTTDYWFPEFERSIAWNDPAIGIDWPIDDE--PLLAAKDAAGKLLAEAE 171
>gi|167623420|ref|YP_001673714.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella halifaxensis
HAW-EB4]
gi|167353442|gb|ABZ76055.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella halifaxensis
HAW-EB4]
Length = 184
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 79/179 (44%), Positives = 110/179 (61%), Gaps = 6/179 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 SIPDVKIIEPSVFGDERGFFMETWNQKKFEELVTGKPTQFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR+ SPT+G WV +SA+N Q+++P GFAHGF
Sbjct: 66 IEN-TQGKLVRVVSGEVFDVAVDIRKGSPTFGQWVGEYLSADNKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
E +YK TDFY+ + + + W D+S+ I WPL +P +SEKD N I S
Sbjct: 125 SNEAEFVYKCTDFYNPKAEISLFWADESLAINWPLSG--IPMLSEKDINGITFETIISN 181
>gi|224184715|gb|ACN39588.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga
canimorsus]
Length = 189
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 71/181 (39%), Positives = 110/181 (60%), Gaps = 3/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ F D RG+F +++S + E + FVQDN S S G +RGLHFQ+P
Sbjct: 7 EIKDVIIIEPEIFGDERGYFFESFSQEKFVEQVCKTTFVQDNESKS-RYGVVRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P++Q+KLVR + G++ D+AVDIR+ SPT+G V++E+SA N Q+++P GFAHGF L
Sbjct: 66 PFSQSKLVRVVVGKVLDVAVDIRKGSPTFGKHVAVELSAENKRQLFVPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK ++Y+ + + V W D ++ I W + + +S+KD+ P L F++
Sbjct: 126 EVIFQYKCDNYYNPKEEGSVLWNDPALQIDWKIPHQDI-ILSQKDKESPLLKDTF-HFDF 183
Query: 182 D 182
D
Sbjct: 184 D 184
>gi|154151293|ref|YP_001404911.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Methanoregula
boonei 6A8]
gi|153999845|gb|ABS56268.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanoregula boonei 6A8]
Length = 191
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 88/184 (47%), Positives = 120/184 (65%), Gaps = 4/184 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+N + I++ F+D RG+F +TY+ + E+G+ D FVQDN S S G +RGLH+Q
Sbjct: 10 KLNDITIIRPTVFKDDRGFFLETYNREEFAEVGITDEFVQDNVSHSAK-GVVRGLHYQSK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVR + G+IFD+ VDIR SPTYG + +E+ A + +++P GFAHGFM L+
Sbjct: 69 N-AQGKLVRVLRGKIFDVVVDIRNGSPTYGHHLGIELDAQDAGMLFVPVGFAHGFMALKD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL--PSVSEKDQNLPFLNQIDSPF 179
TEV+YKVTDFYS ++D+G+ W D + I WP+ + P VS KD LPFL I SPF
Sbjct: 128 ATEVMYKVTDFYSPQYDAGIRWDDPDLRIPWPMKAQEISRPVVSPKDAVLPFLRDIISPF 187
Query: 180 EYDG 183
Y G
Sbjct: 188 NYAG 191
>gi|313496629|gb|ADR57995.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida BIRD-1]
Length = 181
Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 73/175 (41%), Positives = 110/175 (62%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ + F DSRG+F + ++++ ++ G+ FVQDNHS S G +RGLH+Q
Sbjct: 8 IPEVLIIEPKVFADSRGFFFEAFNAREFSQQTGVNVAFVQDNHSRSIK-GVLRGLHYQVA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G I DIAVD+R++SPT+G WV++ +SA+N Q++IP GFAHGF +
Sbjct: 67 N-TQGKLVRVVHGEIRDIAVDVRKSSPTFGKWVAVHLSADNHRQLWIPPGFAHGFAVMSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+Y+ D + W D +DI W L P +S+KD+ L + +
Sbjct: 126 SAEFLYKTTDYYNPGADRCIRWDDPQLDIDWGLQQP--PLLSDKDKVGLPLAEAE 178
>gi|228938436|ref|ZP_04101045.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228971315|ref|ZP_04131942.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228977925|ref|ZP_04138306.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis Bt407]
gi|228781842|gb|EEM30039.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis Bt407]
gi|228788351|gb|EEM36303.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228821173|gb|EEM67189.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326938943|gb|AEA14839.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 181
Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 84/178 (47%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+FS++Y+ ++L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDERGFFSESYNKQVLETLGITYSFVQDNVSYSAKAGTIRGLHFQKK 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R+ SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKKSPTFKQWKGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS +HDSG+ W+DK + I WP+ D P +S+KDQ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSAKHDSGLLWEDKDLAIPWPVTD---PILSDKDQILPLLEEYEDSF 181
>gi|319789558|ref|YP_004151191.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermovibrio ammonificans
HB-1]
gi|317114060|gb|ADU96550.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermovibrio ammonificans
HB-1]
Length = 187
Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 78/182 (42%), Positives = 110/182 (60%), Gaps = 6/182 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I + ++++R F+D RG+F + + + G++ FVQDN S S +RGLH+Q
Sbjct: 8 LPIPGLLLVESRLFKDGRGFFMELFKLPDFEAAGIKGPFVQDNLSLS-RKNVLRGLHYQV 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KLV C+ G++FD+AVD+R+ SPT+G W E+ G +YIP GFAHGF+TL
Sbjct: 67 EPAAQGKLVTCLRGKVFDVAVDLRKGSPTFGRWFGTELFP--GKMLYIPEGFAHGFLTLS 124
Query: 121 MNTEVIYKVTD-FYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
V YKVT YS EHD + W D I I WPL P +SEKD+N P L++ + F
Sbjct: 125 EEALVFYKVTGSPYSPEHDRSLKWNDPQIGIEWPLDGE--PILSEKDRNAPSLSEAEINF 182
Query: 180 EY 181
+
Sbjct: 183 RW 184
>gi|330951118|gb|EGH51378.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae Cit 7]
Length = 181
Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 74/177 (41%), Positives = 109/177 (61%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + + F D RG+F ++++ K +E G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVIVFEPKVFGDDRGFFFESFNQKAFEEAVGRSVTFVQDNHSRSVK-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR G +FD+AVD+R++SPT+G WV L ++A N Q++IP GFAHGF+ L
Sbjct: 65 IQQP-QGKLVRVTVGEVFDVAVDLRKSSPTFGKWVGLHLTAENKKQLWIPEGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+++ EH+ +AW D ++ I WP + PS+S KDQ +
Sbjct: 124 SESAEFLYKTTDYWAPEHERSLAWNDTTVGIDWPFGEA--PSLSAKDQKAVVFEDAE 178
>gi|332702170|ref|ZP_08422258.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio africanus str.
Walvis Bay]
gi|332552319|gb|EGJ49363.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio africanus str.
Walvis Bay]
Length = 177
Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 96/173 (55%), Gaps = 5/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V ++K F D+RG+F +T+ + + G+ FVQDN S S G +RGLHFQR
Sbjct: 8 IAGVLLIKPHVFGDNRGFFLETFQQERYRSAGIALPFVQDNRSRS-RKGILRGLHFQRQ- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLV GR+FD+AVDIR SPT+G W + Q+++P G AHGF L
Sbjct: 66 HPQGKLVSVARGRVFDVAVDIRPESPTFGQWFGAVLDDEKHHQLWVPPGLAHGFCVLSDV 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ +YK TDFY E + V W D I I WP + P +SEKD P L +
Sbjct: 126 ADFVYKCTDFYYSEDEGSVRWDDPEIGIGWPFEE---PILSEKDAKAPLLRDL 175
>gi|213967238|ref|ZP_03395387.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato T1]
gi|301381026|ref|ZP_07229444.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato Max13]
gi|302059365|ref|ZP_07250906.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato K40]
gi|302134882|ref|ZP_07260872.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|213928080|gb|EEB61626.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato T1]
Length = 181
Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 75/177 (42%), Positives = 111/177 (62%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + + F D RG+F ++++ K +E+ G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVIVFEPKTFGDDRGFFFESFNQKAFEEVVGRPVKFVQDNHSRSVK-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR G +FD+AVD+R++SPT+G WV L ++A N Q++IP GFAHGF+ L
Sbjct: 65 IQQP-QGKLVRVTVGEVFDVAVDLRKSSPTFGKWVGLHLTAENKKQLWIPEGFAHGFIVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+++ EH+ +AW D ++ I WP +T PS+S KDQ +
Sbjct: 124 SESAEFLYKTTDYWAPEHERSLAWNDATVGIEWPFSET--PSLSAKDQKAVAFEDAE 178
>gi|91776362|ref|YP_546118.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacillus flagellatus
KT]
gi|91710349|gb|ABE50277.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacillus flagellatus
KT]
Length = 182
Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 78/175 (44%), Positives = 112/175 (64%), Gaps = 4/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V + + + F D+RG+F ++++ K +E G + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVIVFEPKIFGDARGFFFESFNQKAFEEAVGRKYDFVQDNHSKSSK-GVLRGLHYQIQ 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVR +AG +FD+AVDIR++SPT+G WV +SA N Q+++P GFAHGF+ L
Sbjct: 67 -QAQGKLVRVVAGEVFDVAVDIRKSSPTFGQWVGQHLSAENKKQMWVPPGFAHGFLVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TDFY+ H+ ++W D + I WP + T P +S KDQ L+Q +
Sbjct: 126 TAEFLYKTTDFYAPAHERCLSWNDPVVGIEWPDIGT-PPLLSSKDQQGLGLHQTE 179
>gi|229095802|ref|ZP_04226781.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock3-29]
gi|229114753|ref|ZP_04244167.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock1-3]
gi|228668818|gb|EEL24246.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock1-3]
gi|228687635|gb|EEL41534.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock3-29]
Length = 181
Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 84/178 (47%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDERGFFTESYNKKVLETLGVTYSFVQDNVSYSAEAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+RR+SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRRDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS +HDSGV W DK + I WP+ P +S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSADHDSGVLWNDKELAIPWPVTS---PILSDKDRILPLLQECEDSF 181
>gi|298481186|ref|ZP_06999380.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D22]
gi|298272760|gb|EFI14327.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D22]
Length = 189
Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 76/180 (42%), Positives = 112/180 (62%), Gaps = 2/180 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F+D RG+F +++S + E + FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IESVVIIEPRLFKDDRGYFFESFSQREFTEKVRKVDFVQDNESKSS-YGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLVR I G + D+AVDIR+ SPT+G VS+E++ N Q +IP GFAHGF+ L
Sbjct: 67 YAQSKLVRVIKGSVLDVAVDIRKGSPTFGEHVSVELTERNHCQFFIPRGFAHGFVVLTEE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK +FY+ + + +AW D ++ I W + + +SEKD++ L + F+Y+
Sbjct: 127 VIFQYKCDNFYAPQCEGALAWDDPALKIDWKVPADKI-ILSEKDKHHERLEEASWLFDYN 185
>gi|119775372|ref|YP_928112.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella amazonensis SB2B]
gi|119767872|gb|ABM00443.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella amazonensis SB2B]
Length = 176
Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 76/170 (44%), Positives = 101/170 (59%), Gaps = 4/170 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
IN V+++ FED RG+F +++ + EL FVQDN S S GT+RGLH+Q
Sbjct: 8 INEVKLIIPSVFEDERGYFFESWQQQRFAELVAPVTFVQDNQSLS-KRGTLRGLHWQEA- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KL+ ++G IFD+AVDIR SPTYG WV +SA N Q++IP GFAHGF L +
Sbjct: 66 HPQDKLISVLSGTIFDVAVDIRPESPTYGKWVGETLSAENHRQLFIPKGFAHGFYVLSES 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
V YK +DFY E + + W D S+ I WP+ LP +S KD P
Sbjct: 126 AIVSYKCSDFYHPEDERSIRWDDPSLAIQWPIEG--LPLLSAKDAMAPLF 173
>gi|299532674|ref|ZP_07046062.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Comamonas testosteroni S44]
gi|298719309|gb|EFI60278.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Comamonas testosteroni S44]
Length = 183
Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 82/175 (46%), Positives = 111/175 (63%), Gaps = 3/175 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I +++ K D RG F +++ L + G F+QDNHS S G +RGLH+Q P
Sbjct: 8 IPEIKLFKPTIHRDGRGLFVESFRQDLFNQATGTNYEFIQDNHSRSSK-GVLRGLHYQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVR I+G +FD+AVDIRR+S T+G WV E+SA N Q++IP GFAHGF+ L
Sbjct: 67 PHAQGKLVRVISGAVFDVAVDIRRSSLTFGKWVGAELSAENHRQLWIPPGFAHGFVVLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+++YK T +Y+ E D G+ W D I I WP LD I S+SEKDQ+ P Q +
Sbjct: 127 TADLVYKATAYYAPESDRGLLWNDPDIAIAWPQLD-IDFSLSEKDQHQPAFTQAE 180
>gi|54293740|ref|YP_126155.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Legionella pneumophila str.
Lens]
gi|53753572|emb|CAH15027.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Legionella pneumophila str.
Lens]
Length = 187
Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 70/177 (39%), Positives = 104/177 (58%), Gaps = 5/177 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ ++I++ + + D RG+F +++ +K +EL G+ D FVQDN S S G +RGLH+Q
Sbjct: 7 QIDELKIIEPKIYGDERGFFYESFQAKRYEELLGITDRFVQDNFSRS-QKGVLRGLHYQS 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLV + G + D+AVDIR SPT+G WV + +S N Q +IP GFAHGF L
Sbjct: 66 Q-QTQGKLVSVLTGEVLDVAVDIRLGSPTFGQWVGVILSGENKRQFWIPKGFAHGFYVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ YK TD+Y E + + + D + I WPL + + +S KD L+ ID+
Sbjct: 125 AMADFAYKCTDYYHPESEFSIHYLDPQLAIDWPLGEQV--QLSPKDAAAKPLSLIDA 179
>gi|47568422|ref|ZP_00239123.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus G9241]
gi|206977669|ref|ZP_03238561.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus H3081.97]
gi|217958796|ref|YP_002337344.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH187]
gi|222094943|ref|YP_002529003.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Q1]
gi|228984390|ref|ZP_04144569.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229138008|ref|ZP_04266606.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus BDRD-ST26]
gi|229195516|ref|ZP_04322284.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus m1293]
gi|47554970|gb|EAL13320.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus G9241]
gi|206744097|gb|EDZ55512.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus H3081.97]
gi|217065626|gb|ACJ79876.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH187]
gi|221239001|gb|ACM11711.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Q1]
gi|228588056|gb|EEK46106.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus m1293]
gi|228645353|gb|EEL01587.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus BDRD-ST26]
gi|228775359|gb|EEM23746.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 181
Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 83/178 (46%), Positives = 121/178 (67%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDERGFFTESYNKKVLETLGVTYSFVQDNVSYSTEAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS HDSGV W DK + I WP+ P +S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSANHDSGVLWNDKDLAIPWPVTS---PILSDKDRILPSLQECEDSF 181
>gi|265764217|ref|ZP_06092785.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_16]
gi|263256825|gb|EEZ28171.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_16]
Length = 190
Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 76/179 (42%), Positives = 109/179 (60%), Gaps = 2/179 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + IL+ R F+D RG+F ++++ + Q FVQDN S S G IRGLHFQ+P
Sbjct: 7 SIEGLVILEPRLFQDDRGYFFESFNQWEFESNVCQTTFVQDNESKSS-YGVIRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR I G + D+AVDIR+ SPT+G VS+E++ +N Q +IP GFAHGF L
Sbjct: 66 PFAQSKLVRVIKGAVLDVAVDIRKGSPTFGKHVSVELTEDNHRQFFIPRGFAHGFSVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
YK +FY E + +AW D ++I W + + +S KD P L+ I+ F+
Sbjct: 126 EVIFQYKCDNFYHPEAEGAIAWNDPDLNIDWKIPQDRV-ILSGKDYTHPLLHNIELQFD 183
>gi|146343780|ref|YP_001208828.1| dTDP-4,deoxyrhamnose 3,5 epimerase [Bradyrhizobium sp. ORS278]
gi|146196586|emb|CAL80613.1| dTDP-4,deoxyrhamnose 3,5 epimerase [Bradyrhizobium sp. ORS278]
Length = 184
Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 71/180 (39%), Positives = 105/180 (58%), Gaps = 5/180 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V IL+ + F D RG+F +T+ + +ELG+ FVQDN S S G +RGLH Q
Sbjct: 7 DLPEVIILEPKLFGDHRGFFLETFQAARYRELGINGPFVQDNMSRSS-YGVLRGLHLQN- 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLV + GR+ D+AVD+R SP +G V++E+S N Q+++P GFAHGF+ L
Sbjct: 65 PNTQGKLVSAMRGRVLDVAVDVRVGSPNFGKHVAVELSEENRRQLWVPRGFAHGFVVLSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ + YK D+YS + + V W D +I I W + + P +S KD P L + + Y
Sbjct: 125 SADFFYKCDDYYSPKDEMSVRWNDPAIGIDWGVPE---PKLSPKDAEAPLLAEARNLPVY 181
>gi|256420555|ref|YP_003121208.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chitinophaga pinensis DSM
2588]
gi|256035463|gb|ACU59007.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chitinophaga pinensis DSM
2588]
Length = 188
Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 79/181 (43%), Positives = 112/181 (61%), Gaps = 2/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + + + R F D+RG+F ++YS + + GLQ FVQDN + S G +RGLH+Q+
Sbjct: 7 GIPDLLVYEPRVFNDNRGYFFESYSEQAFLQQGLQLKFVQDNQARS-TYGVLRGLHYQQE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVR + GRI D+AVDIR+ SPTYG ++E+SA N Q+ +P GFAHG+ L
Sbjct: 66 PHAQTKLVRVLEGRIIDVAVDIRKGSPTYGKVFTIELSAENKKQLLVPKGFAHGYSVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
EV+YKV +FY + G+ + D +++I W + T VSEKD LP L F Y
Sbjct: 126 TAEVMYKVDNFYHKASEGGIIYNDPALNIDWGISLT-DALVSEKDVILPTLENCTHNFVY 184
Query: 182 D 182
+
Sbjct: 185 N 185
>gi|125654612|ref|YP_001033806.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein [Rhodobacter
sphaeroides 2.4.1]
gi|77386272|gb|ABA81701.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein [Rhodobacter
sphaeroides 2.4.1]
Length = 187
Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 80/181 (44%), Positives = 108/181 (59%), Gaps = 1/181 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V IL R F D+RG F + ++ L+ LG+ FVQDN S S GT+RGLH+Q P
Sbjct: 7 ELPGVLILTPRVFGDARGSFCEAWNRATLQGLGIDLDFVQDNQSISAPVGTVRGLHYQAP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVR G I D+AVD+R SPTYG WV +E++A N Q+ +P GF HGF+T E
Sbjct: 67 PHAQDKLVRVGHGAILDVAVDVRVGSPTYGRWVGVELTAGNARQLLVPKGFLHGFVTREP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+T V+YK TD Y+ + D V + D + I W + D +S+KD P SPF
Sbjct: 127 DTVVLYKTTDVYAPDCDGAVHFADPDLGIDWGI-DPASAVLSDKDARAPRFADWTSPFSI 185
Query: 182 D 182
+
Sbjct: 186 E 186
>gi|255099388|ref|ZP_05328365.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile
QCD-63q42]
Length = 185
Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 73/174 (41%), Positives = 98/174 (56%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ F D RG+F ++Y+ K E GL F+QDN S S G +RG+HFQ
Sbjct: 10 KIEGLYIVEPNVFYDERGYFMESYNKKDFIEQGLDMCFIQDNES-SSRKGVLRGMHFQVK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR G +FD+AVD+R++S T+G W + +S N Q YIP GFAHGF+ L
Sbjct: 69 -YPQGKLVRVTEGEVFDVAVDLRKDSQTFGKWEGVILSDKNKKQFYIPEGFAHGFLVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK T++Y E ++G W DK I I WPL +SEKD+ I
Sbjct: 128 KAVFSYKCTNYYYPEFENGFIWNDKQISIEWPLKGIEEIFLSEKDKKQKSFKDI 181
>gi|218233453|ref|YP_002366001.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus B4264]
gi|229108779|ref|ZP_04238386.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock1-15]
gi|229149524|ref|ZP_04277756.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus m1550]
gi|218161410|gb|ACK61402.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus B4264]
gi|228633870|gb|EEK90467.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus m1550]
gi|228674670|gb|EEL29907.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock1-15]
Length = 181
Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 84/178 (47%), Positives = 121/178 (67%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+FS++Y+ ++L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDERGFFSESYNKQVLETLGITYSFVQDNVSYSAKAGTIRGLHFQKK 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R+ SPT+ W +S +N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKKSPTFKQWKGYILSGDNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS EHDSG+ W+DK + I WP+ D P +S+KDQ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSAEHDSGLLWEDKDLAIPWPVTD---PILSDKDQILPLLEEYEDSF 181
>gi|260174674|ref|ZP_05761086.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D2]
gi|315922937|ref|ZP_07919177.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D2]
gi|313696812|gb|EFS33647.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D2]
Length = 189
Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 75/180 (41%), Positives = 110/180 (61%), Gaps = 2/180 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F+D RG+F +++S + E + FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IEGVVIIEPRLFKDDRGYFFESFSQREFTEKVRKVDFVQDNESKSS-YGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ+KLVR I G + D+AVDIR+ SPT+G VS+E++ N Q +I GFAHGF+ L
Sbjct: 67 YAQSKLVRVIKGSVLDVAVDIRKGSPTFGEHVSVELTEENHRQFFISRGFAHGFVVLTEE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK +FY+ + + +AW D ++ I W + + +S KDQ+ L + F+Y+
Sbjct: 127 VIFQYKCDNFYAPQCEGALAWDDPALKIDWKVPADKV-ILSVKDQHHERLEEAGWLFDYN 185
>gi|160881796|ref|YP_001560764.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium phytofermentans
ISDg]
gi|160430462|gb|ABX44025.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium phytofermentans
ISDg]
Length = 182
Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats.
Identities = 67/175 (38%), Positives = 103/175 (58%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ + +++ F+D+RG+F +TY + + G+ F+QDN S S G +RGLHFQ
Sbjct: 10 GIDGLFVIEPTIFKDNRGYFIETYHKEAYEAAGITAEFIQDNQSMS-KKGVLRGLHFQI- 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y QAKLVR ++G +FD+AVD+R+ S T+G W + +S N Q ++P GFAHG++ L
Sbjct: 68 NYPQAKLVRVLSGEVFDVAVDLRKGSKTFGKWYGVVLSEENQKQFFVPEGFAHGYLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YK TDFY D G+ W D + I WP+ + + ++++DQ L I
Sbjct: 128 TAVFAYKCTDFYHPGDDGGLLWNDPEVGIEWPIPEDMDLVIAQRDQEWGTLADIK 182
>gi|107021949|ref|YP_620276.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia cenocepacia AU
1054]
gi|116688896|ref|YP_834519.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia cenocepacia
HI2424]
gi|170732197|ref|YP_001764144.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia cenocepacia
MC0-3]
gi|105892138|gb|ABF75303.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia cenocepacia AU
1054]
gi|116646985|gb|ABK07626.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia cenocepacia
HI2424]
gi|169815439|gb|ACA90022.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia cenocepacia
MC0-3]
Length = 183
Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats.
Identities = 69/175 (39%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F ++++ K E FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPKVFGDARGFFYESFNGKEFAEQVAPGVEFVQDNHSRSSK-GVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVDIR++SP +G WV + +S +N Q+++P GFAHGF+ L
Sbjct: 69 -HAQGKLVRVVEGEVFDVAVDIRKDSPNFGKWVGVVLSNDNHRQLWVPPGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD++ EH+ + W D I I WP+ P ++ KD L++ +
Sbjct: 128 AAQFLYKTTDYWFPEHERSIVWNDPEIGIEWPI--DFEPLLAAKDAAGKRLSEAE 180
>gi|114326768|ref|YP_743925.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Granulibacter bethesdensis
CGDNIH1]
gi|114314942|gb|ABI61002.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Granulibacter bethesdensis
CGDNIH1]
Length = 188
Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats.
Identities = 85/181 (46%), Positives = 111/181 (61%), Gaps = 1/181 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V ++ +F D+RG+FS+TY + E G+ FVQDNHS S GTIRGLH Q
Sbjct: 6 LAIPEVILVTPDRFGDNRGFFSETYQHRKYAEGGISGTFVQDNHSLSAQRGTIRGLHCQV 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLVRC+ G I+D+AVD R SPTYG WV+ E+SA N Q+++P GF H F TL+
Sbjct: 66 APNVQGKLVRCVRGAIWDVAVDARTGSPTYGQWVAAELSAENWQQLWVPGGFLHAFCTLQ 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+TEVIYKVT Y + GV W D +D+ WP+ + + SEKD LP + F
Sbjct: 126 PDTEVIYKVTGDYDKSAERGVIWNDAELDLPWPVAPEEVVT-SEKDLQLPPFSAAKGWFT 184
Query: 181 Y 181
Y
Sbjct: 185 Y 185
>gi|28170140|gb|AAM34819.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Vibrio vulnificus]
Length = 183
Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 106/176 (60%), Gaps = 6/176 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
I V+I++ F D RG+F +T++ K +EL G FVQDNHS S G +RGLH+Q
Sbjct: 7 KIPDVKIIEPTVFGDERGFFMETWNQKRFEELVTGKPTKFVQDNHSKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SPT+G WV +S+ N Q++IP GFAHGF
Sbjct: 66 TEN-TQGKLVRVVSGEVFDVAVDIRKDSPTFGQWVGEYLSSENKRQLWIPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ + + W D ++I WP I P++S+KD+ Q
Sbjct: 125 SEEAEFVYKCTDYYNPTAEVSLRWDDSYVNIIWPCK--ITPTLSDKDRLGLSWKQF 178
>gi|194334561|ref|YP_002016421.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prosthecochloris aestuarii
DSM 271]
gi|194312379|gb|ACF46774.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prosthecochloris aestuarii
DSM 271]
Length = 195
Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats.
Identities = 67/191 (35%), Positives = 113/191 (59%), Gaps = 3/191 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I + + F D RG+F +++ + ++ Q FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IPDVLIFEPKVFGDERGYFFESFRQDIFEQHVGQVNFVQDNQSKS-KYGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q+KLVR + G + D+AVDIR+ SP +G +V++++ + +++P GFAHGF+ L +
Sbjct: 67 FTQSKLVRVLDGCVIDVAVDIRKGSPWFGQYVTVKLDSVKNNMLWVPQGFAHGFVVLSED 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK ++Y+ ++D+G+ W D + I W + + VS+KD P L++ F Y+
Sbjct: 127 AVFAYKCDNYYAPDYDAGIRWNDPELSIDWAIPVADI-QVSQKDATQPLLDE-SYLFSYE 184
Query: 183 GLPLLSLNMER 193
++ +R
Sbjct: 185 SFKKEAVYPQR 195
>gi|83746220|ref|ZP_00943274.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia solanacearum UW551]
gi|207744129|ref|YP_002260521.1| dtdp-4-dehydrorhamnose 3,5-epimerase protein [Ralstonia
solanacearum IPO1609]
gi|83727186|gb|EAP74310.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia solanacearum UW551]
gi|206595533|emb|CAQ62460.1| dtdp-4-dehydrorhamnose 3,5-epimerase protein [Ralstonia
solanacearum IPO1609]
Length = 183
Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats.
Identities = 71/175 (40%), Positives = 106/175 (60%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++++++ ++ G++ FVQDNHS S G +RGLH+Q
Sbjct: 10 IPEVLILEPKVFGDDRGFFFESFNARTFEQATGVKRTFVQDNHSRSAR-GVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR G +FD+AVD+R+ SPT+G WV + +SA N Q+++P GFAHGF+
Sbjct: 69 QP-QGKLVRVTVGEVFDVAVDLRKRSPTFGKWVGVTLSAENKRQLWVPEGFAHGFVVTSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD++ EH+ + W D + I WP+ T P ++ KD L D
Sbjct: 128 YAEFLYKTTDYWYAEHERSIVWNDPDLGIEWPVQGT--PILAAKDAAGARLAGAD 180
>gi|257791790|ref|YP_003182396.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eggerthella lenta DSM 2243]
gi|257475687|gb|ACV56007.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eggerthella lenta DSM 2243]
Length = 190
Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats.
Identities = 70/172 (40%), Positives = 99/172 (57%), Gaps = 2/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V ++ + D RG+F++TY G+ FVQDN S S G +RGLHFQ
Sbjct: 18 SIEGVLVVDVTAYGDERGYFAETYKRPDFVAGGIDAEFVQDNQS-SSTKGVLRGLHFQIH 76
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q+KLVR ++G +FD+AVD+R S TYG W + +SA N Q ++P GFAHGF+ L
Sbjct: 77 -HPQSKLVRVVSGEVFDVAVDLRPGSATYGAWEGVVLSAENRRQFFVPRGFAHGFLVLSD 135
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
E YK D Y + G+ W D I I WP+ + + +SEKD+ P L+
Sbjct: 136 IAEFCYKCDDVYHPNDEGGLMWNDPEIGIEWPIPEGMELVLSEKDKAHPGLS 187
>gi|33591366|ref|NP_879010.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bordetella pertussis Tohama
I]
gi|33594889|ref|NP_882532.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bordetella parapertussis
12822]
gi|33599164|ref|NP_886724.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bordetella bronchiseptica
RB50]
gi|33564965|emb|CAE39912.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bordetella parapertussis]
gi|33571008|emb|CAE40487.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bordetella pertussis Tohama
I]
gi|33575210|emb|CAE30673.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bordetella bronchiseptica
RB50]
gi|332380767|gb|AEE65614.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bordetella pertussis CS]
Length = 182
Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats.
Identities = 77/179 (43%), Positives = 111/179 (62%), Gaps = 4/179 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ + F D RG F ++++ L +LG + FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIADVVLIEPQVFGDERGCFFESFNQDRLDAQLGRRIRFVQDNHSCS-RAGVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ QAKLVR +AG +D+AVD+RR SPT+G W +SA N Q++IP GFAHGF+ L
Sbjct: 65 IL-HPQAKLVRVVAGEAYDVAVDLRRGSPTFGRWTGAYLSARNRHQLWIPEGFAHGFLAL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
+TE +YK TD+Y+ EH+ V W D + + WPL P +S KD+ L + D+
Sbjct: 124 SDDTECLYKATDYYAPEHERCVRWDDPQLKVDWPLQGQA-PILSVKDRQGVALARADTY 181
>gi|294645676|ref|ZP_06723363.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides ovatus SD CC 2a]
gi|292638955|gb|EFF57286.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides ovatus SD CC 2a]
Length = 179
Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats.
Identities = 74/177 (41%), Positives = 111/177 (62%), Gaps = 2/177 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I++ R F+D RG+F +++S + E + FVQDN S S G +RGLHFQ+PPYAQ
Sbjct: 1 VVIIEPRLFKDDRGYFFESFSQREFTEKVRKVDFVQDNESKSS-YGVLRGLHFQKPPYAQ 59
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
+KLVR I G + D+AVDIR+ SPT+G V++E++ N Q +IP GFAHGF+ L
Sbjct: 60 SKLVRVIKGSVLDVAVDIRKGSPTFGEHVAVELTEENHRQFFIPRGFAHGFVVLTEEVIF 119
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK +FY+ + + +AW D ++ I W + + +SEKD++ L + F+Y+
Sbjct: 120 QYKCDNFYAPQCEGALAWDDPALKIDWKVPADKI-ILSEKDKHHERLEEASWLFDYN 175
>gi|255036724|ref|YP_003087345.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dyadobacter fermentans DSM
18053]
gi|254949480|gb|ACT94180.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dyadobacter fermentans DSM
18053]
Length = 181
Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats.
Identities = 79/172 (45%), Positives = 102/172 (59%), Gaps = 5/172 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + + R F D RG F ++++ + +LGL FVQDN SFS G +RGLHFQ
Sbjct: 7 SIAGLVEIFPRVFGDDRGMFFESFNEEAFTKLGLPVNFVQDNQSFS-KKGVVRGLHFQNA 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVR I GR+ D+AVDIR SPT+G E+S YIP GFAHGF+ LE
Sbjct: 66 PFAQGKLVRVITGRVLDVAVDIRPGSPTFGKHEVFELSGEQNNIAYIPEGFAHGFVALED 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
T YK T+ Y+ E +SG+ W D ++I W + D P VSEKD LP
Sbjct: 126 -TIFSYKCTNLYNKESESGILWNDPDLNIDWGIAD---PIVSEKDLVLPTFR 173
>gi|42780410|ref|NP_977657.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus ATCC 10987]
gi|42736329|gb|AAS40265.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus ATCC 10987]
Length = 181
Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats.
Identities = 83/178 (46%), Positives = 121/178 (67%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDGRGFFTESYNKKVLETLGITYSFVQDNVSYSAEAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS HDSGV W DK + I WP+ P +S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSANHDSGVLWNDKDLAIPWPVTS---PILSDKDRILPSLQECEDSF 181
>gi|30261324|ref|NP_843701.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str. Ames]
gi|47526494|ref|YP_017843.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str. 'Ames
Ancestor']
gi|49184156|ref|YP_027408.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
Sterne]
gi|65318592|ref|ZP_00391551.1| COG1898: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Bacillus anthracis str. A2012]
gi|118476792|ref|YP_893943.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis str.
Al Hakam]
gi|165872831|ref|ZP_02217457.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0488]
gi|167636119|ref|ZP_02394424.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0442]
gi|167641195|ref|ZP_02399449.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0193]
gi|170686788|ref|ZP_02878008.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0465]
gi|170708891|ref|ZP_02899325.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0389]
gi|177654415|ref|ZP_02936312.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0174]
gi|196036175|ref|ZP_03103574.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus W]
gi|196037366|ref|ZP_03104677.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus NVH0597-99]
gi|196044277|ref|ZP_03111513.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus 03BB108]
gi|218902415|ref|YP_002450249.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH820]
gi|227815935|ref|YP_002815944.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str. CDC
684]
gi|228913891|ref|ZP_04077516.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228926356|ref|ZP_04089428.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228932594|ref|ZP_04095473.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228944926|ref|ZP_04107287.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229120841|ref|ZP_04250083.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus 95/8201]
gi|229599940|ref|YP_002865745.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0248]
gi|254682614|ref|ZP_05146475.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
CNEVA-9066]
gi|254725412|ref|ZP_05187194.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A1055]
gi|254734032|ref|ZP_05191746.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
Western North America USA6153]
gi|254740821|ref|ZP_05198510.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
Kruger B]
gi|254753664|ref|ZP_05205700.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
Vollum]
gi|254758761|ref|ZP_05210788.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
Australia 94]
gi|301052860|ref|YP_003791071.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis CI]
gi|30255178|gb|AAP25187.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str. Ames]
gi|47501642|gb|AAT30318.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str. 'Ames
Ancestor']
gi|49178083|gb|AAT53459.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
Sterne]
gi|118416017|gb|ABK84436.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis str.
Al Hakam]
gi|164711408|gb|EDR16959.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0488]
gi|167510836|gb|EDR86228.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0193]
gi|167528473|gb|EDR91238.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0442]
gi|170126207|gb|EDS95100.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0389]
gi|170669311|gb|EDT20054.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0465]
gi|172080699|gb|EDT65781.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0174]
gi|195991150|gb|EDX55119.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus W]
gi|196024916|gb|EDX63587.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus 03BB108]
gi|196031608|gb|EDX70204.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus NVH0597-99]
gi|218537776|gb|ACK90174.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH820]
gi|227007473|gb|ACP17216.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str. CDC
684]
gi|228662501|gb|EEL18099.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus 95/8201]
gi|228814595|gb|EEM60855.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228827063|gb|EEM72818.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228833180|gb|EEM78745.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228845830|gb|EEM90856.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|229264348|gb|ACQ45985.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis str.
A0248]
gi|300375029|gb|ADK03933.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus biovar
anthracis str. CI]
Length = 181
Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats.
Identities = 83/178 (46%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDDRGFFTESYNKKVLETLGVTHSFVQDNVSYSAEAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS +HDSGV W DK + I WP+ P +S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSADHDSGVLWNDKELAIPWPVTS---PILSDKDRILPLLQECEDSF 181
>gi|255524619|ref|ZP_05391572.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium carboxidivorans
P7]
gi|255511643|gb|EET87930.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium carboxidivorans
P7]
Length = 181
Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats.
Identities = 81/167 (48%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V I+ F D RG+F +TY+ K +GL VFVQDN S S G +RGLHFQ+
Sbjct: 10 EIDGVYIIDVEIFSDKRGYFIETYNYDDFKSVGLDMVFVQDNQS-SSKKGVLRGLHFQKT 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR I G +FD+AVDIR+NS T+G WV + +S N Q YIP GFAHGF+ L
Sbjct: 69 -HPQGKLVRVIKGEVFDVAVDIRKNSKTFGKWVGVTLSEGNKRQFYIPQGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+E+ YK TDFY E + G+AW D I I WP+ +S+KD N
Sbjct: 128 ESEICYKCTDFYHSEDEGGIAWDDPEIGIEWPMEGIDEIILSDKDGN 174
>gi|300692300|ref|YP_003753295.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia solanacearum PSI07]
gi|299079360|emb|CBJ52032.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia solanacearum PSI07]
Length = 183
Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats.
Identities = 71/175 (40%), Positives = 107/175 (61%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++++++ ++ G++ FVQDNHS S +RGLH+Q
Sbjct: 10 IPEVLILEPKVFGDDRGFFFESFNARAFEQATGVKRTFVQDNHSRSAR-NVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G +FD+AVD+R++SPT+G WV + +SA N Q+++P GFAHGF+
Sbjct: 69 -HPQGKLVRVTVGEVFDVAVDLRKSSPTFGKWVGVTLSAENKRQLWVPEGFAHGFVVTSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD++ EH+ V W D + I WP+ T P ++ KD L D
Sbjct: 128 YAEFLYKTTDYWYAEHERSVVWNDPDLGIEWPVQGT--PILAAKDAAGARLAGAD 180
>gi|29726036|gb|AAO88960.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]
Length = 177
Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats.
Identities = 73/174 (41%), Positives = 103/174 (59%), Gaps = 5/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+I++ + F D RG+F +T+ K +E LG+ FVQDNHS S G +RGLHFQ+
Sbjct: 8 IPDVKIIEPKVFGDERGFFLETFHLKRYQEMLGINLDFVQDNHSRS-TKGVLRGLHFQKT 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVDIR+ SPT+G W + +S N Q ++P GFAHGF+ L
Sbjct: 67 -KPQGKLVRVVRGEVFDVAVDIRKGSPTFGKWEGVILSEENKRQFWVPPGFAHGFLVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK TD+Y + + W D +DI WP + I S+KD L+ +
Sbjct: 126 IADFEYKCTDYYDASDEGSLLWSDPELDIDWPNVSEIKT--SQKDSAAGLLSDL 177
>gi|148360590|ref|YP_001251797.1| dTDP-6-deoxy-D-glucose-3,5-epimerase RmlC [Legionella pneumophila
str. Corby]
gi|296106344|ref|YP_003618044.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Legionella pneumophila
2300/99 Alcoy]
gi|148282363|gb|ABQ56451.1| dTDP-6-deoxy-D-glucose-3,5-epimerase RmlC [Legionella pneumophila
str. Corby]
gi|295648245|gb|ADG24092.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Legionella pneumophila
2300/99 Alcoy]
Length = 187
Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats.
Identities = 72/177 (40%), Positives = 106/177 (59%), Gaps = 5/177 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ ++I++ + + D RG+F +++ +K +EL G+ D FVQDN S S G +RGLH+Q
Sbjct: 7 QIDELKIIEPKIYGDERGFFYESFQAKRYEELLGITDRFVQDNFSRS-QKGVLRGLHYQS 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLV +AG +FD+AVDIR SPT+G WV + +S N Q +IP GFAHGF L
Sbjct: 66 Q-QTQGKLVSVLAGEVFDVAVDIRLGSPTFGQWVGVILSGENKRQFWIPKGFAHGFYVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ YK TD+Y E + + + D + I WPL + + +S KD L+ ID+
Sbjct: 125 AMADFAYKCTDYYYPESEFSIHYLDPQLAIDWPLGEQV--QLSPKDAAAKPLSLIDA 179
>gi|89901454|ref|YP_523925.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodoferax ferrireducens
T118]
gi|89346191|gb|ABD70394.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodoferax ferrireducens
T118]
Length = 183
Score = 254 bits (651), Expect = 3e-66, Method: Composition-based stats.
Identities = 69/175 (39%), Positives = 106/175 (60%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V IL+ R F D+RG+F ++++ + + GL FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVLILEPRVFGDARGFFFESFNQRDFAQATGLDVEFVQDNHSRSVK-GVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G +FD+ VD+RR+SP +G W + +SA+N Q+++P GFAHGF+
Sbjct: 69 -HPQGKLVRVTQGEVFDVVVDLRRDSPNFGKWDGVLLSADNKRQLWVPPGFAHGFVVTSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD++ EH+ + W D ++ + WPL T P ++ KD L + +
Sbjct: 128 TAEFLYKTTDYWYPEHERSLLWNDPTVGVRWPL--TGEPQLAAKDSAAKTLAEAE 180
>gi|225863169|ref|YP_002748547.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus 03BB102]
gi|229183519|ref|ZP_04310743.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus BGSC 6E1]
gi|225790174|gb|ACO30391.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus 03BB102]
gi|228599929|gb|EEK57525.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus BGSC 6E1]
Length = 181
Score = 254 bits (651), Expect = 3e-66, Method: Composition-based stats.
Identities = 83/178 (46%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDDRGFFTESYNKKVLETLGVTHSFVQDNVSYSAEAGTIRGLHFQKS 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS +HDSGV W DK + I WP+ P +S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSADHDSGVLWNDKELAIPWPVTS---PILSDKDRILPLLQECEDSF 181
>gi|229154885|ref|ZP_04282999.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus ATCC 4342]
gi|228628443|gb|EEK85156.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus ATCC 4342]
Length = 181
Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats.
Identities = 83/178 (46%), Positives = 120/178 (67%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDERGFFTESYNKKVLETLGVTYSFVQDNVSYSTEAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS HDSGV W DK + I WP+ P +S+KD+ LP L + F
Sbjct: 127 HTIVMYKVDEYYSANHDSGVLWNDKDLAIPWPVTS---PILSDKDRILPSLQDCEDSF 181
>gi|241204008|ref|YP_002975104.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240857898|gb|ACS55565.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 192
Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats.
Identities = 85/177 (48%), Positives = 115/177 (64%), Gaps = 1/177 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + + +F D RG+FS+ + +E F+QDN S S GT+RGLHFQ PP
Sbjct: 8 IEGIIAITPPRFGDHRGYFSEVFKDAWFRENVADVTFIQDNESLSAQTGTVRGLHFQIPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVRC+AGRI DI VDIR SP++G W+S E+S NG+Q+++P GFAHGF TLE N
Sbjct: 68 FAQGKLVRCLAGRIMDIVVDIREGSPSFGKWLSQELSPENGMQLWVPAGFAHGFATLEPN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ + YKVT YS +HD G+AW D +I I WP + + +S+KD+ LP L + F
Sbjct: 128 SVISYKVTAPYSPQHDRGIAWNDPAIGIRWPFYERDM-VLSDKDKTLPRLADLPGHF 183
>gi|91782044|ref|YP_557250.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia xenovorans
LB400]
gi|91685998|gb|ABE29198.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia xenovorans
LB400]
Length = 183
Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 107/176 (60%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V IL+ + F D RG+F ++++++ +EL G++ FVQDNHS S +RGLH+Q
Sbjct: 9 EIPDVLILEPKVFGDDRGFFYESFNARRFEELTGVKREFVQDNHSRSAR-NVLRGLHYQI 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G +FD+AVD+R+ SPT+G WV + +SA N Q+++P GFAHGF+
Sbjct: 68 QNP-QGKLVRVVTGEVFDVAVDLRKQSPTFGRWVGVTLSAENKRQLWVPEGFAHGFVVTS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD++ EH+ + W D I I WP++ P++S KD +
Sbjct: 127 EYAEFLYKTTDYWYAEHERSIVWNDPQIGIQWPIVGQ--PALSGKDAAGVSFESAE 180
>gi|251780228|ref|ZP_04823148.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243084543|gb|EES50433.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 179
Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats.
Identities = 76/178 (42%), Positives = 112/178 (62%), Gaps = 5/178 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V I++ + F D RGWF +TYS E + FVQDN S+S + G +RG+HFQ
Sbjct: 7 KLDGVYIVEPQVFGDERGWFMETYSKIKTPE--IACDFVQDNQSYSKEKGILRGIHFQNG 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQAKLVRC++G + D+AVD+R+ S TY WV++E+SA N Q++IP GF HGF+TL
Sbjct: 65 EHAQAKLVRCVSGAVLDVAVDLRKKSLTYKQWVAVELSAENKKQLFIPRGFGHGFVTLTN 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ E +YK ++Y+ E D + + D I + W + + P +SEKD+ P L D F
Sbjct: 125 DVEFVYKTDNYYNYESDRSIRFDDPEIGVEWGIEN---PILSEKDKKAPLLQDSDCTF 179
>gi|229171963|ref|ZP_04299528.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus MM3]
gi|228611306|gb|EEK68563.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus MM3]
Length = 181
Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats.
Identities = 83/178 (46%), Positives = 124/178 (69%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDERGFFTESYNKKVLEALGVTYSFVQDNVSYSAEAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQAMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS +HDSGV W+DK + I WP+ + P +S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSADHDSGVLWEDKDLAIPWPVTN---PILSDKDRILPLLQECEDSF 181
>gi|254788158|ref|YP_003075587.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Teredinibacter turnerae
T7901]
gi|237683821|gb|ACR11085.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Teredinibacter turnerae
T7901]
Length = 182
Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats.
Identities = 69/165 (41%), Positives = 106/165 (64%), Gaps = 2/165 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ R F D RG+F +T+ + E + FVQDNHS S G +RGLH+Q
Sbjct: 8 IPDVVIIEPRVFGDERGFFMETFRADAFAEHCTERPFVQDNHSASRQ-GILRGLHYQME- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR ++G++FD+AVD+R++S T+G WV +E+SA+N Q+++P GFAHGF +
Sbjct: 66 QTQGKLVRVVSGKVFDVAVDLRQSSATFGQWVGVELSADNKRQLWVPEGFAHGFYVMSEF 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
E +YK TD+Y + + + W D ++ + WPL++ P++S KD
Sbjct: 126 AEFVYKCTDYYHPQSERSLRWDDPTVGVEWPLVNGEAPALSAKDA 170
>gi|186477068|ref|YP_001858538.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia phymatum STM815]
gi|184193527|gb|ACC71492.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia phymatum STM815]
Length = 183
Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats.
Identities = 68/175 (38%), Positives = 109/175 (62%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F ++++++ E FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPKVFGDARGFFYESFNAREFAEKVEAGVEFVQDNHSRSAK-GVLRGLHYQIE 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVD+R++SPT+G W + +S +N Q++IP GFAHGF+ L
Sbjct: 69 -HAQGKLVRVVEGEVFDVAVDVRKSSPTFGKWEGVLLSGDNHRQLWIPPGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD++ EH+ + W D I I WP+ P ++ KD L++ +
Sbjct: 128 AAQFLYKTTDYWFPEHERSIVWNDPEIGIEWPI--DFEPVLAAKDAAGKRLSEAE 180
>gi|332561399|ref|ZP_08415714.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides WS8N]
gi|332274198|gb|EGJ19515.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides WS8N]
Length = 187
Score = 254 bits (650), Expect = 4e-66, Method: Composition-based stats.
Identities = 80/182 (43%), Positives = 107/182 (58%), Gaps = 1/182 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V IL R F D+RG F + + L+ LG+ FVQDN S S GT+RGLH+Q P
Sbjct: 7 ELPGVLILTPRVFGDARGSFCEAWKRATLQGLGIDLDFVQDNQSISAPVGTVRGLHYQAP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVR G I D+AVD+R SPTYG WV +E++A N Q+ +P GF HGF+T E
Sbjct: 67 PHAQDKLVRVGHGAILDVAVDVRVGSPTYGRWVGVELTAGNARQLLVPKGFLHGFVTREP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+T V+YK TD Y+ + D V + D + I W + D +S+KD P SPF
Sbjct: 127 DTVVLYKTTDVYAPDCDGAVHFADPDLGIDWGI-DPASAVLSDKDARAPRFADWTSPFSI 185
Query: 182 DG 183
+
Sbjct: 186 EA 187
>gi|296531723|ref|ZP_06894552.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseomonas cervicalis ATCC
49957]
gi|296267955|gb|EFH13753.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseomonas cervicalis ATCC
49957]
Length = 208
Score = 254 bits (650), Expect = 4e-66, Method: Composition-based stats.
Identities = 85/171 (49%), Positives = 115/171 (67%), Gaps = 1/171 (0%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKL 68
+ TR+F D+RG+FS+++S++ L GL FVQDN S S GT+RGLHFQ P QAKL
Sbjct: 39 IGTRRFGDARGYFSESWSARDLAACGLVAEFVQDNFSTSAQVGTLRGLHFQIAPEPQAKL 98
Query: 69 VRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128
VR + GR+ D+AVD+RR SPTYG V++E++A G Q+++P GFAHGF TLE + V YK
Sbjct: 99 VRVLRGRVLDVAVDLRRASPTYGQHVAVELTAEAGNQLFVPEGFAHGFCTLEPDCAVAYK 158
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
VT +Y+ D GVAW D + I WPL P +S+KD P L ++ + F
Sbjct: 159 VTGYYAPACDKGVAWDDPDLAIAWPLPPGG-PVLSDKDARQPKLAELPAYF 208
>gi|154247475|ref|YP_001418433.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthobacter autotrophicus
Py2]
gi|154161560|gb|ABS68776.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthobacter autotrophicus
Py2]
Length = 188
Score = 254 bits (650), Expect = 4e-66, Method: Composition-based stats.
Identities = 82/180 (45%), Positives = 111/180 (61%), Gaps = 2/180 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+++ V ++ R+F D+RG+F +TY L G+ FVQDN S S GT+RGLH Q
Sbjct: 7 LDLPEVILVTPRRFGDARGYFCETYVKPLYAANGIVADFVQDNESLSALPGTVRGLHMQA 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQAKLVR ++G IFD+AVD+R+ SPTYG W ++A G Q+++P GFAHGF TL
Sbjct: 67 PPFAQAKLVRVLSGAIFDVAVDVRKGSPTYGRWAGARLTAEGGEQLFVPQGFAHGFCTLA 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T V YKV FY + G+ W D + I W +S+KD+ LP L DSPF
Sbjct: 127 PDTRVAYKVDAFYDRASECGIIWNDPDLAIDWRFTGET--ILSDKDRILPRLKDFDSPFV 184
>gi|330972799|gb|EGH72865.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 181
Score = 254 bits (650), Expect = 4e-66, Method: Composition-based stats.
Identities = 74/177 (41%), Positives = 110/177 (62%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + + F D RG+F ++++ K +E+ G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVIVFEPKTFGDDRGFFFESFNQKAFEEVVGRPVKFVQDNHSRSVK-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR G +FD+AVD+R++SPT+G WV L ++A N Q++IP GFAHGF+ L
Sbjct: 65 IQQP-QGKLVRVTVGEVFDVAVDLRKSSPTFGKWVGLHLTAENKKQLWIPEGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+++ EH+ +AW D ++ I WP + PS+S KDQ +
Sbjct: 124 SESAEFLYKTTDYWAPEHERSLAWNDATVGIDWPFGEA--PSLSAKDQKAVVFEDAE 178
>gi|297538358|ref|YP_003674127.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylotenera sp. 301]
gi|297257705|gb|ADI29550.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylotenera sp. 301]
Length = 180
Score = 254 bits (650), Expect = 4e-66, Method: Composition-based stats.
Identities = 71/175 (40%), Positives = 103/175 (58%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +++ F D RG+F ++++ + G FVQDNHS S + +RG+H+Q
Sbjct: 8 IADVLVIEPNVFGDDRGFFFESFNHAKFEAAIGKPVKFVQDNHSKSAE-NVLRGMHYQIQ 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVDIR+NS T+G WV +SA N Q+++P GFAHGF+ L
Sbjct: 67 QP-QGKLVRVVQGIVFDVAVDIRKNSSTFGQWVGEILSAENKKQLWVPEGFAHGFVVLSK 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ E + +AW D IDI WP+ L +S KDQ + +
Sbjct: 126 TAEFLYKTTDYYAPEFERCIAWNDPEIDIKWPINGAAL--LSAKDQLGKSFAEAE 178
>gi|88604302|ref|YP_504480.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanospirillum hungatei
JF-1]
gi|88189764|gb|ABD42761.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanospirillum hungatei
JF-1]
Length = 190
Score = 254 bits (650), Expect = 4e-66, Method: Composition-based stats.
Identities = 84/181 (46%), Positives = 117/181 (64%), Gaps = 4/181 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ + ++ + F+DSRG+F ++Y+ K G+ D FVQDNHS S G +RGLH+Q P
Sbjct: 11 LAGILLVVPQYFKDSRGFFVESYNKKDFSHAGITDEFVQDNHSKS-QKGVLRGLHYQY-P 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVR + G I+D+AVDIR SPTYG ++ + N+ +YIP GFAHGF+ LE +
Sbjct: 69 HAQGKLVRVLKGSIYDVAVDIRIGSPTYGKPFAVTLRENDPAMLYIPVGFAHGFLALEDD 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL--DTILPSVSEKDQNLPFLNQIDSPFE 180
TEV+YKVTD Y D+G+ W D ++I WPL P +SEKD P L+++ SPF
Sbjct: 129 TEVMYKVTDLYYPSGDAGLLWNDPDLNIPWPLDIIGIKEPILSEKDTKHPILSELRSPFT 188
Query: 181 Y 181
Y
Sbjct: 189 Y 189
>gi|189500820|ref|YP_001960290.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium phaeobacteroides
BS1]
gi|189496261|gb|ACE04809.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium phaeobacteroides
BS1]
Length = 201
Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats.
Identities = 77/182 (42%), Positives = 114/182 (62%), Gaps = 3/182 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V + + R F DSRG+F +++ +L+E + FVQDN S S G +RGLHFQ+PP
Sbjct: 10 IPDVLVFEPRVFGDSRGYFFESFRKDILQEHVGKVDFVQDNQSKSG-YGVLRGLHFQKPP 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q+KLVR IAG + D+AVDIR SP YG V++++ + ++IP GFAHGF+ L
Sbjct: 69 FTQSKLVRVIAGAVLDVAVDIREGSPWYGRHVAVKLDSERNNMLWIPQGFAHGFIVLSKE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK ++Y+ ++D+G+ W DK++ I W L + + VS+KD +LPFL + F YD
Sbjct: 129 AIFSYKCDNYYAPDYDAGIRWNDKALGIDWTLPEEDI-QVSDKDASLPFLKEA-YHFSYD 186
Query: 183 GL 184
Sbjct: 187 DF 188
>gi|237799712|ref|ZP_04588173.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331022567|gb|EGI02624.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 181
Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats.
Identities = 74/177 (41%), Positives = 109/177 (61%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + + F D RG+F ++++ K +E+ G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVIVFEPKTFGDERGFFFESFNQKAFEEVVGRPVKFVQDNHSRSVK-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR G +FD+AVD+R++SPT+G WV L ++A N Q++IP GFAHGF+ L
Sbjct: 65 IQQP-QGKLVRVTVGEVFDVAVDLRKSSPTFGKWVGLHLTAENKKQLWIPEGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+++ EH+ + W D S+ I WP + PS+S KDQ +
Sbjct: 124 SESAEFLYKTTDYWAPEHERSLVWNDASVGIEWPFSEA--PSLSAKDQKAVAFEDAE 178
>gi|28868292|ref|NP_790911.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato str. DC3000]
gi|28851529|gb|AAO54606.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
tomato str. DC3000]
gi|331019588|gb|EGH99644.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 181
Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats.
Identities = 75/177 (42%), Positives = 111/177 (62%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + + F D RG+F ++++ K +E+ G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVIVFEPKTFGDDRGFFFESFNQKAFEEVVGRSVKFVQDNHSRSVK-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR G +FD+AVD+R++SPT+G WV L ++A N Q++IP GFAHGF+ L
Sbjct: 65 IQQP-QGKLVRVTVGEVFDVAVDLRKSSPTFGKWVGLHLTAENKKQLWIPEGFAHGFIVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+++ EH+ +AW D ++ I WP +T PS+S KDQ +
Sbjct: 124 SESAEFLYKTTDYWAPEHERSLAWNDATVGIEWPFSET--PSLSAKDQKAVAFEDAE 178
>gi|313747666|gb|ADR74245.1| RmlC [Escherichia coli]
Length = 181
Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats.
Identities = 70/179 (39%), Positives = 104/179 (58%), Gaps = 10/179 (5%)
Query: 1 MNIN-----PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M I +++ + F D+RG+F +TY + +E+G+ + FVQDN S S G +RG
Sbjct: 1 MKITKTHLLGCIVIEPKVFRDARGFFVETYQKEKYQEIGITEDFVQDNRSRSAK-GVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LHFQ Q KLV +G ++D+AVD+R S T+G + L +SA Q+YIP GFAHG
Sbjct: 60 LHFQTNQP-QGKLVSVTSGAVYDVAVDLRPESATFGSYFGLVLSAELNNQLYIPPGFAHG 118
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
F L + + +YK T +Y+ +SG+ W D ++ I WP+ + P +SEKD LP
Sbjct: 119 FCVLSDSADFLYKCTQYYNPASESGIQWNDPTLKINWPISN---PFISEKDSTLPSFKD 174
>gi|320535548|ref|ZP_08035648.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Treponema phagedenis F0421]
gi|320147609|gb|EFW39125.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Treponema phagedenis F0421]
Length = 181
Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats.
Identities = 72/170 (42%), Positives = 101/170 (59%), Gaps = 3/170 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ + ++ + F D+RG+F +++S K G+ FVQDN S S G +RGLHFQ
Sbjct: 10 IDGLYKIQPKIFSDNRGYFFESWSKKEFAAAGITYDFVQDNQSKSLK-GVLRGLHFQNE- 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR ++G +FD+AVDIR+NS ++G W + +SA Q +I GFAHGF+ L
Sbjct: 68 HPQGKLVRVLSGEVFDVAVDIRKNSSSFGKWFGVILSAEKQNQFFISPGFAHGFLVLSDE 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
YK TDFY E + G+ W D +I I WP LD + +SEKD P
Sbjct: 128 AIFAYKCTDFYHPEDEGGIMWNDPAIGIEWPKLD-VPYILSEKDTKYPTF 176
>gi|295102107|emb|CBK99652.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Faecalibacterium prausnitzii
L2-6]
Length = 188
Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats.
Identities = 70/180 (38%), Positives = 95/180 (52%), Gaps = 5/180 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +++ + F D RG+F +TY E G+ FVQDN S S G +RGLHFQ+
Sbjct: 10 EIPGVVVIEPQVFGDDRGYFMETYQKDQFAEAGIDKEFVQDNQSRS-TRGVLRGLHFQK- 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G ++D+AVD R NS T+G WV + +S N YIP GFAHGF+ L
Sbjct: 68 NHTQGKLVRVTRGEVYDVAVDCRPNSATFGKWVGVILSEENKKMFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
E YK TD Y + G+ + D ++++ WP S KD+ FEY
Sbjct: 128 VAEFCYKCTDVYDPTSEGGIPYDDPTVNVQWP-DCGCEHKTSAKDKLHEPFAA--QKFEY 184
>gi|325261285|ref|ZP_08128023.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium sp. D5]
gi|324032739|gb|EGB94016.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium sp. D5]
Length = 202
Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats.
Identities = 79/184 (42%), Positives = 103/184 (55%), Gaps = 18/184 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
IN + I++ DSRG+F +TY+ K ++E GL FVQDN S S G +RGLH+Q+
Sbjct: 12 GINGLCIIEPAVHGDSRGYFMETYNQKDMEEAGLGMNFVQDNQS-SSSKGVLRGLHYQKE 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR I G +FD+AVD+R S TYG W +E++ +N Q YIP GFAHGF+ L
Sbjct: 71 -FPQGKLVRVIKGNVFDVAVDLRSGSETYGKWFGVELTEDNKKQFYIPEGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YK TDFY + G+AW D I + WP L D +SEK
Sbjct: 130 VAEFCYKCTDFYHPGDEGGLAWNDPEIGVCWPQVVGEYKGNASAEGYRLEDGTGLMLSEK 189
Query: 166 DQNL 169
DQ
Sbjct: 190 DQKW 193
>gi|237654463|ref|YP_002890777.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thauera sp. MZ1T]
gi|237625710|gb|ACR02400.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thauera sp. MZ1T]
Length = 178
Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats.
Identities = 70/174 (40%), Positives = 101/174 (58%), Gaps = 5/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V I++ + F D RG+F +T+ + +E G+ FVQDNHS S G +RGLHFQ+
Sbjct: 8 LPGVLIIEPKAFGDHRGFFLETFQVERYREAGITLPFVQDNHSRS-QRGVLRGLHFQKT- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV G ++D+AVDI S TYG +V +E++ +N Q+++P G+AHGF L
Sbjct: 66 RPQGKLVSVSRGAVYDVAVDIDPASATYGKFVGVELNDDNHRQMWVPPGYAHGFCVLSEV 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ YK TDFY + G+AW D + I WP+ P +S KD N P L +
Sbjct: 126 ADFQYKCTDFYLPADEGGLAWNDPDVGIPWPIE---APQLSAKDMNNPRLRDLK 176
>gi|229090264|ref|ZP_04221509.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock3-42]
gi|228693044|gb|EEL46760.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus Rock3-42]
Length = 181
Score = 254 bits (649), Expect = 5e-66, Method: Composition-based stats.
Identities = 83/178 (46%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDDRGFFTESYNKKVLETLGVTHSFVQDNVSYSAEAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFKRWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS +HDSGV W DK + I WP+ P +S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSADHDSGVLWNDKELAIPWPVTS---PILSDKDRILPLLQECEDSF 181
>gi|220925351|ref|YP_002500653.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium nodulans ORS
2060]
gi|219949958|gb|ACL60350.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium nodulans ORS
2060]
Length = 184
Score = 254 bits (649), Expect = 5e-66, Method: Composition-based stats.
Identities = 82/178 (46%), Positives = 117/178 (65%), Gaps = 2/178 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+++ ++F D RGWFS+T+ + +L + G+ F+QDN SFS GT+RG+HFQ P
Sbjct: 8 IPEVKLVIPKRFGDERGWFSETFRADILAQAGITAPFIQDNQSFSAHPGTVRGIHFQTHP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQAKLVR +AG I D+AVD+RR SP+YG V++ + A G Q+YIP GF H F TLE N
Sbjct: 68 HAQAKLVRVLAGAILDVAVDLRRASPSYGRHVAVRLDAEAGHQLYIPIGFGHAFCTLEPN 127
Query: 123 TEVIYKVT-DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
T V YKV +Y+ EHD + W D ++ I WP+ +S+KD+ P L+ + + F
Sbjct: 128 TMVAYKVAGGYYNREHDGNLLWNDPALGIDWPVSAEA-AVLSDKDRAAPRLSDLPALF 184
>gi|189424897|ref|YP_001952074.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geobacter lovleyi SZ]
gi|189421156|gb|ACD95554.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geobacter lovleyi SZ]
Length = 181
Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats.
Identities = 71/175 (40%), Positives = 109/175 (62%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V IL+ + F D RG+F ++++ ++ ++ GL+ FVQ NHS S +RGLH+Q
Sbjct: 8 LPGVLILEPKVFGDDRGFFFESFNERVWQKATGLKRSFVQHNHSRSAR-NVLRGLHYQIQ 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR I+G +FD+AVDIRR+SPT G W +SA N Q+++P GFAHGF
Sbjct: 67 -HPQGKLVRVISGEVFDVAVDIRRSSPTCGKWFGTTLSAENKRQMWVPEGFAHGFCVTSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +Y TD+++ E + +AW D +I+I+WPL P +S KD L++ +
Sbjct: 126 HAEFLYLTTDYWAPEFERTIAWDDPAINISWPLCGE--PLLSAKDLAGKPLSEAE 178
>gi|149277136|ref|ZP_01883278.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pedobacter sp. BAL39]
gi|149232013|gb|EDM37390.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pedobacter sp. BAL39]
Length = 184
Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats.
Identities = 78/178 (43%), Positives = 117/178 (65%), Gaps = 2/178 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ + ++D+RG+F +++++K+L + G+ FVQDN SFS G +RGLH Q+ P
Sbjct: 8 IKGLLIVEPKVWKDNRGYFYESFNAKILSDAGIDVTFVQDNQSFS-QKGALRGLHAQKDP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVR I GR+ D+AVDIR++SPT+G +LE+S N LQ+++P GF HGF+TLE +
Sbjct: 67 FAQGKLVRVIQGRVMDVAVDIRKSSPTFGQHFALELSGENHLQLWVPPGFLHGFITLEDD 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL-DTILPSVSEKDQNLPFLNQIDSPF 179
T YKV+++Y + GV W D ++I W +S+KDQ LP SPF
Sbjct: 127 TIFTYKVSNYYDKNSEIGVIWNDADLNIEWGKEVPESEFLLSDKDQVLPAFKDFSSPF 184
>gi|299067777|emb|CBJ38987.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia solanacearum CMR15]
Length = 183
Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 107/175 (61%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++++++ +++ G++ FVQDNHS S +RGLH+Q
Sbjct: 10 IPEVLILEPKVFGDDRGFFFESFNARAFEQVTGVKRNFVQDNHSRSAR-NVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G +FD+AVD+R++SPT+G WV + +SA N Q+++P GFAHGF+
Sbjct: 69 -HPQGKLVRVTVGEVFDVAVDLRKSSPTFGKWVGVTLSAENKRQLWVPEGFAHGFVVTSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD++ EH+ + W D I I WP+ T P ++ KD D
Sbjct: 128 YAEFLYKTTDYWYAEHERSIVWNDPDIGIEWPVQGT--PILAAKDAAGARFASAD 180
>gi|49477139|ref|YP_035453.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|49328695|gb|AAT59341.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar konkukian str. 97-27]
Length = 181
Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats.
Identities = 83/178 (46%), Positives = 121/178 (67%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F++ Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDERGFFTEIYNKKVLETLGVTYSFVQDNVSYSTEAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS +HDSGV W DK + I WP+ P +S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSADHDSGVLWNDKELAIPWPVTS---PILSDKDRILPLLQECEDSF 181
>gi|188588490|ref|YP_001922380.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum E3 str.
Alaska E43]
gi|188498771|gb|ACD51907.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum E3 str.
Alaska E43]
Length = 179
Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats.
Identities = 76/178 (42%), Positives = 112/178 (62%), Gaps = 5/178 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V I++ + F D RGWF +TYS E + FVQDN S+S + G +RG+HFQ
Sbjct: 7 KLDGVYIVEPQVFGDERGWFMETYSKIKTPE--IACDFVQDNQSYSKEKGILRGIHFQNG 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQAKLVRC++G + D+AVD+R+ S TY WV++E+SA N Q++IP GF HGF+TL
Sbjct: 65 EHAQAKLVRCVSGAVLDVAVDLRKKSLTYKQWVAVELSAENKKQLFIPRGFGHGFVTLTK 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ E +YK ++Y+ E D + + D I + W + + P +SEKD+ P L D F
Sbjct: 125 DVEFVYKTDNYYNYESDRSIRFDDPEIGVEWGIEN---PILSEKDKKAPLLQDSDCTF 179
>gi|126175090|ref|YP_001051239.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS155]
gi|125998295|gb|ABN62370.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS155]
Length = 187
Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats.
Identities = 74/174 (42%), Positives = 108/174 (62%), Gaps = 6/174 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
I V+I++ + D RG+F +T++ + +EL G FVQDNHS S G +RGLH+Q
Sbjct: 13 KIPEVKIIEPAVYGDERGFFMETWNQQKFEELVTGKLTRFVQDNHSKS-KKGILRGLHYQ 71
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVDIR++SP+YG WV +SA N Q+++P GFAHGF
Sbjct: 72 TEN-TQGKLVRVVSGEVFDVAVDIRKDSPSYGYWVGEYLSAENKRQLWVPEGFAHGFYVT 130
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
E +YK T++Y+ + + W DKS+DI WP+ + P +S+KDQ L
Sbjct: 131 SEEAEFVYKCTNYYNPNSEVSILWSDKSLDIKWPIQSS--PELSKKDQQGVLLQ 182
>gi|218531920|ref|YP_002422736.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium
chloromethanicum CM4]
gi|218524223|gb|ACK84808.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium
chloromethanicum CM4]
Length = 184
Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats.
Identities = 85/178 (47%), Positives = 112/178 (62%), Gaps = 1/178 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+ + ++ D RGWFS+ Y + LL E G+ + FVQDN SFS GTIRGLHFQ
Sbjct: 8 EIPAVKRVIPKRHGDDRGWFSEVYRADLLAEHGIANAFVQDNQSFSAPAGTIRGLHFQVA 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKLVR +AG I D+AVD+R +SPTYG V++ + A G Q+++P GFAHGF TLE
Sbjct: 68 PNAQAKLVRVLAGAILDVAVDLRSDSPTYGRHVAVRLDATGGEQLFVPAGFAHGFCTLEP 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V YKV +YS D + W D +I I WP+ + +S KD+ P L + F
Sbjct: 128 DTMVAYKVDAYYSPADDRNLRWNDPAIGIAWPVAE-ADAILSGKDKAAPLLADLGRVF 184
>gi|330887883|gb|EGH20544.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv. mori
str. 301020]
Length = 286
Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats.
Identities = 72/189 (38%), Positives = 110/189 (58%), Gaps = 7/189 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + F D RG+F ++++ ++ + + FVQDNHS S G +RG+H+Q
Sbjct: 96 LAIPDVILFTPKVFGDERGFFYESFNQQVFDSAVNRKVNFVQDNHSKSA-GGVVRGMHYQ 154
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR I G +FD+AVD+RR+SP +G WV +S N Q+++P GFAHGF+ L
Sbjct: 155 IQNP-QGKLVRVIKGEVFDVAVDLRRDSPFFGKWVGEYLSEENKKQLWVPEGFAHGFIVL 213
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ E +YK T++Y + + W D I I WP L T P++S KDQN +Q++
Sbjct: 214 SDSAEFLYKTTNYYDPRSERSLRWDDADIGIKWPALST-QPTLSVKDQNALPFSQLE--- 269
Query: 180 EYDGLPLLS 188
++ LL
Sbjct: 270 YFEDSSLLP 278
>gi|53712099|ref|YP_098091.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides fragilis YCH46]
gi|52214964|dbj|BAD47557.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides fragilis YCH46]
Length = 189
Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats.
Identities = 75/180 (41%), Positives = 108/180 (60%), Gaps = 2/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V I++ R F D RG F ++++ + E + +FVQDN S S G IRGLHFQ+P
Sbjct: 7 DIKGVMIIEPRLFSDERGHFFESFNQNIFVEEVCKTMFVQDNESKSS-YGVIRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR + G + D+AVDIRRNSP +G +VS+E++ +N Q++IP GFAHGF L
Sbjct: 66 PFAQSKLVRVVKGAVLDVAVDIRRNSPFFGKYVSVELTEDNHRQLFIPRGFAHGFSVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK + Y+ + + +AW D + I W + +SEKD L D F+Y
Sbjct: 126 EVVFQYKCDNLYAPQCEGAIAWNDPDLGIDWKIP-MEKVVLSEKDSCHSVLKDTDWLFDY 184
>gi|118580534|ref|YP_901784.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pelobacter propionicus DSM
2379]
gi|118503244|gb|ABK99726.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pelobacter propionicus DSM
2379]
Length = 181
Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 110/176 (62%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I++ + F D RG+F ++++ ++ +EL GL FVQ NHS S G +RGLH+Q
Sbjct: 7 SIPDVLIVEPKVFGDERGFFFESFNQRIWRELTGLDGCFVQHNHSRS-TAGVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR ++G +FD+AVDIRR+S T+G W +SA+N Q+++P GFAHGF
Sbjct: 66 HNP-QGKLVRVVSGEVFDVAVDIRRSSATFGRWFGAALSADNKRQLWVPPGFAHGFYVTS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +Y TDF++ EH+ +AW D + I WPL PS+S+KD+ P + +
Sbjct: 125 PVAEFLYLTTDFWAPEHERCIAWNDPDLAIQWPLAGE--PSLSDKDRAAPPFRKAE 178
>gi|5545320|dbj|BAA82535.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase [Actinobacillus
actinomycetemcomitans]
Length = 179
Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats.
Identities = 69/174 (39%), Positives = 102/174 (58%), Gaps = 4/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++L+ + F D RG+F +T+ + +E FVQ+NHS S G +RGLH+Q
Sbjct: 7 KIPDVKLLELQVFGDERGFFMETFRDEWFRENVADRTFVQENHSKSIK-GVLRGLHYQTE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR I+G +FD+AVD+R NS T+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 N-TQGKLVRVISGAVFDVAVDMRENSLTFGQWVGEVLSAENKHQLWVPEGFAHGFYVLTD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YK TD+Y+ + + W D+++ + WP+ P++S KD L +
Sbjct: 125 EAEFTYKCTDYYNPRAEHSLIWNDQTVGVEWPIYSE--PNLSAKDLGGKMLAEA 176
>gi|304310335|ref|YP_003809933.1| dTDP-4-dehydrorhamnose 3,5-epimerase [gamma proteobacterium HdN1]
gi|301796068|emb|CBL44272.1| dTDP-4-dehydrorhamnose 3,5-epimerase [gamma proteobacterium HdN1]
Length = 181
Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V IL+ R F DSRG+F ++Y++ +EL GL FVQDNHS S G +RGLH+Q
Sbjct: 7 GLPEVLILEPRVFGDSRGFFYESYNAARFRELTGLTVDFVQDNHSRSGR-GVLRGLHYQV 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G ++D+AVD+RR+SP++G WV +E+S N +++IP GFAHGF+ L
Sbjct: 66 QQP-QGKLVRVVRGSVWDVAVDVRRSSPSFGRWVGVELSEENQKEMWIPPGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
+ + +YK TD+Y+ +H+ + W D+ + + W + P +SEKD+ L + + P
Sbjct: 125 ESADFLYKTTDYYAPQHERCIVWDDRDLGVNW--MYEGDPILSEKDKAGASLKEAELP 180
>gi|313114790|ref|ZP_07800290.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622845|gb|EFQ06300.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 197
Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats.
Identities = 70/180 (38%), Positives = 95/180 (52%), Gaps = 5/180 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +++ + F D RG+F +TY E G+ FVQDN S S G +RGLHFQ+
Sbjct: 19 EIPGVVVIEPQVFGDDRGYFMETYQKDQFAEAGIDKEFVQDNQSRS-TRGVLRGLHFQK- 76
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G +FD+AVD R +S T+G WV + +S N YIP GFAHGF+ L
Sbjct: 77 NHTQGKLVRVTKGEVFDVAVDCRPHSATFGKWVGVTLSEENKKMFYIPEGFAHGFLVLSD 136
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
E YK TD Y + G+ + D ++++ WP S KD+ FEY
Sbjct: 137 VAEFCYKCTDVYDPTSEGGIPYDDPTVNVQWP-DCGCEHKTSAKDKLHEPFAA--QKFEY 193
>gi|220924209|ref|YP_002499511.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium nodulans ORS
2060]
gi|219948816|gb|ACL59208.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium nodulans ORS
2060]
Length = 184
Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats.
Identities = 83/178 (46%), Positives = 117/178 (65%), Gaps = 2/178 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+++ ++F D RGWFS+T+ + +L + G+ F+QDN SFS GT+RG+HFQ P
Sbjct: 8 IPEVKLVIPKRFGDERGWFSETFRADILAQAGITAPFIQDNQSFSAHPGTVRGIHFQTHP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQAKLVR +AG I D+AVD+RR SP+YG V++ + A G Q+YIP GF H F TLE N
Sbjct: 68 HAQAKLVRVLAGAILDVAVDLRRASPSYGRHVAVRLDAEAGHQLYIPIGFGHAFCTLEPN 127
Query: 123 TEVIYKVT-DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
T V YKV +YS EHD + W D ++ I WP+ +S+KD+ P L+ + + F
Sbjct: 128 TMVAYKVAGGYYSREHDGNLLWNDPALGIDWPVSAEA-AVLSDKDRAAPRLSDLPALF 184
>gi|253581530|ref|ZP_04858755.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium varium ATCC
27725]
gi|251836600|gb|EES65135.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium varium ATCC
27725]
Length = 203
Score = 253 bits (648), Expect = 7e-66, Method: Composition-based stats.
Identities = 82/177 (46%), Positives = 109/177 (61%), Gaps = 6/177 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + IL+ F D RG+F +TY+ K +E+G+ + FVQDNHS S G +RGLHFQ
Sbjct: 10 GIEGLYILEPTVFGDERGFFLETYNKKEFEEIGIFEEFVQDNHSKS-KKGVLRGLHFQTK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
++Q KLVR I G ++D+AVDIR+ SPTYG W +E++A N +IP GFAHGF+TLE
Sbjct: 69 -HSQGKLVRVIKGAVYDVAVDIRKGSPTYGKWYGIELNAVNKKMFFIPKGFAHGFLTLED 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPFLNQ 174
TE YK TD Y E+DSG+ W DK I+I W +SEKD+ +
Sbjct: 128 ETEFQYKCTDLYHPEYDSGIMWNDKDININWNFEKYGLKEENMVLSEKDKKHQSFKE 184
>gi|288926984|ref|ZP_06420879.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella buccae D17]
gi|315608741|ref|ZP_07883719.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella buccae ATCC 33574]
gi|288336230|gb|EFC74616.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella buccae D17]
gi|315249591|gb|EFU29602.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella buccae ATCC 33574]
Length = 182
Score = 253 bits (648), Expect = 7e-66, Method: Composition-based stats.
Identities = 73/175 (41%), Positives = 105/175 (60%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I+ + FED RG+F + + +E + F+QDN S S G +RGLH+Q
Sbjct: 7 EIKGVWIMTPKVFEDRRGYFFEAWKKAEFEEHVGKVDFIQDNESKSS-FGVLRGLHYQTG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
YAQAKLVR I GR+ D+AVD+R++SPT+G V++E+S N Q +IP GFAHGF+ L
Sbjct: 66 DYAQAKLVRVIKGRVLDVAVDLRKSSPTFGRHVAVELSEENKRQFFIPRGFAHGFLVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YKV + Y+ +H++G+ W D+ + I WP+ D S+KD P L +
Sbjct: 126 EAVFTYKVDNAYAPQHEAGIRWDDEQVAIKWPI-DPGDVVTSDKDLKAPALKDAE 179
>gi|228946127|ref|ZP_04108462.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228813540|gb|EEM59826.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 194
Score = 253 bits (648), Expect = 7e-66, Method: Composition-based stats.
Identities = 85/179 (47%), Positives = 112/179 (62%), Gaps = 3/179 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V I++ K D RG+F +T + K + L LQ FVQDN S S GTIRGLH+Q P
Sbjct: 14 LDGVFIIELDKCSDKRGYFIETCNKKKFELLDLQGDFVQDNQSLSVHTGTIRGLHYQLNP 73
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ K+V CI+G I+D+ VDIR+ SPTYG W +S N + +P GFAHGF T E N
Sbjct: 74 KAQMKVVSCISGSIYDVVVDIRKGSPTYGQWFGTILSEYNNRLLTVPKGFAHGFCTTEPN 133
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
T V YKV ++YS +H+ G+ W D++I I WP T P +SEKD+ LP L + F Y
Sbjct: 134 TIVQYKVDEYYSPKHEGGILWNDETIGIFWP---TNQPILSEKDRKLPRLKDTNVNFVY 189
>gi|227874476|ref|ZP_03992651.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oribacterium sinus F0268]
gi|227839665|gb|EEJ50120.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oribacterium sinus F0268]
Length = 246
Score = 253 bits (648), Expect = 7e-66, Method: Composition-based stats.
Identities = 78/189 (41%), Positives = 105/189 (55%), Gaps = 18/189 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + I+ +DSRG+F ++Y+ + +E GL FVQDN S S G +RGLHFQ+
Sbjct: 56 DIEGLCIITPTIHQDSRGYFMESYNERDFQEQGLNLRFVQDNQSMSVK-GVLRGLHFQKQ 114
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + GR++D+AVD+R+NS TYG + +S N YIP GFAHGF+ L
Sbjct: 115 -YPQGKLVRVLKGRVYDVAVDLRKNSKTYGKHFGITLSEENKKMFYIPEGFAHGFLVLSD 173
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YKVTDFY + G+AW D SI I WP + D +SEK
Sbjct: 174 TAEFAYKVTDFYHPGDEGGLAWNDPSIGIRWPELKGTYAGNAKKDGYTMEDGSPLLLSEK 233
Query: 166 DQNLPFLNQ 174
D+ L +
Sbjct: 234 DELWLPLAE 242
>gi|261856083|ref|YP_003263366.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Halothiobacillus neapolitanus
c2]
gi|261836552|gb|ACX96319.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Halothiobacillus neapolitanus
c2]
Length = 184
Score = 253 bits (648), Expect = 7e-66, Method: Composition-based stats.
Identities = 73/173 (42%), Positives = 99/173 (57%), Gaps = 5/173 (2%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
+L+ + F D RG+F +T++++ +E GL++ FVQDN S S G +RGLHFQ P
Sbjct: 10 GTLLLEPKVFGDERGFFMETWNAQRYREFGLEENFVQDNLSRS-RRGVLRGLHFQ-EPNP 67
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLV + G +FD+AVDIRR SPT+G W +SA N LQ YIP GFAHGF
Sbjct: 68 QGKLVSVLDGEVFDVAVDIRRGSPTFGQWEGYTLSAQNKLQFYIPPGFAHGFCVTSDTAL 127
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
YK T+ Y ++ +AW D ++I WP+ P +S KD L S
Sbjct: 128 FAYKCTELYQPANEGAIAWDDPDLNIPWPID---QPELSAKDAKGIRLADYPS 177
>gi|241761596|ref|ZP_04759683.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|241373904|gb|EER63437.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 183
Score = 253 bits (648), Expect = 7e-66, Method: Composition-based stats.
Identities = 83/179 (46%), Positives = 112/179 (62%), Gaps = 1/179 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I V ++ K+ DSRG+FS+TY+ +K++G+ FVQDN S S + G +RGLH Q
Sbjct: 6 LSIPEVIVIAPPKYIDSRGFFSETYNENSMKKMGIDTPFVQDNQSLSRNKGVVRGLHCQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PY Q KLVRC G I+D+AVD R SPTYG WV+ EIS N QI+IP GF HGF+TL
Sbjct: 66 SPYIQGKLVRCPKGAIWDVAVDARFGSPTYGKWVAAEISEENWSQIWIPPGFLHGFVTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
NTEV YK T FY+ + V W ++I WP+ + +SEKD+ P ++ F
Sbjct: 126 ENTEVQYKCTSFYNKASERAVIWNCHRLNIPWPI-NHAEILLSEKDKTAPSFDETKKWF 183
>gi|228912334|ref|ZP_04076029.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis IBL
200]
gi|228847317|gb|EEM92276.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis IBL
200]
Length = 194
Score = 253 bits (648), Expect = 7e-66, Method: Composition-based stats.
Identities = 85/179 (47%), Positives = 111/179 (62%), Gaps = 3/179 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V I++ K D RG+F +T + K + L LQ FVQDN S S GTIRGLH+Q P
Sbjct: 14 LDGVFIIELDKCSDKRGYFIETCNKKKFELLDLQGDFVQDNQSLSVHTGTIRGLHYQLNP 73
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ K+V CI+G I+D+ VDIR+ SPTYG W +S N + +P GFAHGF T E N
Sbjct: 74 KAQMKVVSCISGSIYDVVVDIRKGSPTYGQWFGTILSEYNNRLLTVPKGFAHGFCTTEPN 133
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
T V YKV ++YS H+ G+ W D++I I WP T P +SEKD+ LP L + F Y
Sbjct: 134 TIVQYKVDEYYSPNHEGGILWNDETIGIFWP---TNQPILSEKDKKLPRLKDTNVNFVY 189
>gi|220935510|ref|YP_002514409.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thioalkalivibrio sp.
HL-EbGR7]
gi|219996820|gb|ACL73422.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thioalkalivibrio sp.
HL-EbGR7]
Length = 189
Score = 253 bits (648), Expect = 7e-66, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 99/173 (57%), Gaps = 5/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V +++ R F D RG+F +TY + E G+ FVQDN S S G +RGLH Q P
Sbjct: 8 LPGVLLIEPRVFGDERGFFMETYQASRYAEAGIAGPFVQDNLSLS-RHGILRGLHLQH-P 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLV + G +FD+AVD+R +SPT+G WV +S N Q+++P GFAHGF
Sbjct: 66 GAQGKLVSVLKGEVFDVAVDVRTDSPTFGQWVGEYLSETNKRQLWVPEGFAHGFCVTSDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK T YS + + + W D +I I WP+ P++S+KDQ FL I
Sbjct: 126 ALFAYKCTRLYSPQTEISIRWDDPAIGIQWPVD---APALSQKDQAGLFLADI 175
>gi|91789857|ref|YP_550809.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Polaromonas sp. JS666]
gi|91699082|gb|ABE45911.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Polaromonas sp. JS666]
Length = 183
Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats.
Identities = 74/177 (41%), Positives = 109/177 (61%), Gaps = 3/177 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +L+ + F D+RG+F ++++ + G Q FVQDNHS S +RGLH+Q
Sbjct: 6 LAIPDVILLEPQVFGDARGFFFESFNQAKFEAAIGRQASFVQDNHSRSARK-VLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR + G +FD+AVDIR++SPT+G WV +SA+N QI++P GFAHGF+ +
Sbjct: 65 VQQP-QGKLVRVVQGEVFDVAVDIRKSSPTFGQWVGEILSADNKRQIWVPEGFAHGFVVM 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ E + +AW D +I I WPL P +S KDQ ++ +
Sbjct: 124 SDTAEFLYKTTDYYAPEFERCIAWNDPAIGIQWPLPLNTPPLLSSKDQMGLTMHDAE 180
>gi|21227268|ref|NP_633190.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanosarcina mazei Go1]
gi|20905616|gb|AAM30862.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanosarcina mazei Go1]
Length = 183
Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats.
Identities = 74/178 (41%), Positives = 110/178 (61%), Gaps = 3/178 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + IL+ + + D RG+F ++Y+ K L+ L G + F+QDN S S G IRGLH+Q
Sbjct: 8 IKDLLILEAKVYADGRGYFFESYNKKTLESLTGKEYNFIQDNESRSS-YGVIRGLHYQLA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY+QAKLVR + GR++D+AVD+R++SPT+G W +E+S N Q IP GFAHGF L
Sbjct: 67 PYSQAKLVRVLEGRVYDVAVDLRKDSPTFGKWEGVELSGENKKQFLIPKGFAHGFSVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
YK ++Y E ++G+ + D +++I W + + +SEKD+ LP L F
Sbjct: 127 TAVFAYKCDEYYHPEAEAGIIYNDPALNIDWKIPER-DAKLSEKDKLLPELKNARMNF 183
>gi|313904869|ref|ZP_07838241.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium cellulosolvens 6]
gi|313470302|gb|EFR65632.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium cellulosolvens 6]
Length = 193
Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats.
Identities = 68/169 (40%), Positives = 98/169 (57%), Gaps = 5/169 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + +++ F D+RG+F +TY+ G+ FVQDN S S G +RGLHFQ
Sbjct: 12 GIEGLYVIEPSVFGDNRGYFMETYNYNDFAAAGIDCKFVQDNQSAS-KKGVLRGLHFQI- 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR I G +FD+AVD+R S T+G W +E++A N Q +IP FAHGF+ L
Sbjct: 70 NHPQDKLVRVIVGSVFDVAVDLRPGSKTFGKWFGVELTAENKKQFFIPKNFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILP---SVSEKDQ 167
E YKVTDFY + G+ W D + + WP+ + + +S+KD+
Sbjct: 130 YAEFCYKVTDFYHPNDEGGIMWNDPQVGVEWPMPEGMTAGDLILSDKDK 178
>gi|300114908|ref|YP_003761483.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosococcus watsonii C-113]
gi|299540845|gb|ADJ29162.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosococcus watsonii C-113]
Length = 181
Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats.
Identities = 72/175 (41%), Positives = 105/175 (60%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V +++ R F D RG+F ++Y+ +Q FVQDNHS+S +RGLH+Q
Sbjct: 8 LPGVLLIEPRVFGDERGFFFESYNRVAFAAATDIQAEFVQDNHSYSAK-HVLRGLHYQIH 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR IAG +FD+AVD+RR+SP +G WV +SA N Q++IP GFAHGF+ L
Sbjct: 67 QP-QGKLVRVIAGEVFDVAVDLRRHSPGFGRWVGYRLSAENRRQLWIPGGFAHGFLVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK T +Y+ E++ + W D + I WPL + +P +S KDQ + +
Sbjct: 126 YAEFLYKTTAYYAPEYERCIRWDDPDLAIDWPLEE--VPLISAKDQAGCAFKEAE 178
>gi|255654312|ref|ZP_05399721.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile
QCD-23m63]
gi|296452602|ref|ZP_06894296.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile NAP08]
gi|296880986|ref|ZP_06904932.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile NAP07]
gi|296258563|gb|EFH05464.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile NAP08]
gi|296428007|gb|EFH13908.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium difficile NAP07]
Length = 185
Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats.
Identities = 72/174 (41%), Positives = 98/174 (56%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ F D RG+F ++Y+ + E GL F+QDN S S G +RG+HFQ
Sbjct: 10 KIEGLYIVEPSVFCDERGYFMESYNKRDFIEQGLDMCFIQDNES-SSRKGVLRGMHFQVR 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR G +FD+AVD+R++S T+G W + +S N Q YIP GFAHGF+ L
Sbjct: 69 -YPQGKLVRVTEGEVFDVAVDLRKDSKTFGEWEGVILSDKNKKQFYIPEGFAHGFLVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK T++Y E ++G W DK I I WPL +SEKD+ I
Sbjct: 128 KAVFNYKCTNYYYPEFENGFIWNDKQISIEWPLKGIEEIFLSEKDKKQKSFKDI 181
>gi|75909560|ref|YP_323856.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anabaena variabilis ATCC
29413]
gi|75703285|gb|ABA22961.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anabaena variabilis ATCC
29413]
Length = 181
Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats.
Identities = 79/176 (44%), Positives = 109/176 (61%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ + +L+ + F DSRG+F ++Y+ + +LG+ FVQDNHSFS +RGLH+Q
Sbjct: 7 EISDILLLEPQVFTDSRGFFFESYNQQNFTDKLGITVNFVQDNHSFS-QHNVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR I G IFD+AVDIR++SPT+G WV E+SA N Q++IP GFAHGF+ L
Sbjct: 66 IQP-QGKLVRAIVGTIFDVAVDIRKSSPTFGQWVGYELSAENKRQLWIPPGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EV+YK TD+Y+ D + W D + I WPL + P +S KD L +
Sbjct: 125 EVAEVVYKTTDYYAPGGDRTILWNDPDLAINWPLKEP--PILSAKDSQGQPLKSAE 178
>gi|325203205|gb|ADY98658.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
M01-240355]
Length = 179
Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats.
Identities = 75/180 (41%), Positives = 105/180 (58%), Gaps = 9/180 (5%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
MNI V++LK + F D RG+F +T+ K + FVQ+NHS S G +RG
Sbjct: 1 MNIIDTALPDVKLLKPQVFTDGRGFFMETFRDGWFKTQVCERTFVQENHSKSGK-GVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHG
Sbjct: 60 LHYQTEN-TQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHG 118
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F L TE+ YK TD+Y E + + W D ++ I WPL P++S KD L +
Sbjct: 119 FYVLSDTTELTYKCTDYYKPEAEHSLIWNDPTVGIDWPLQGE--PNLSPKDLAGKVLAEA 176
>gi|332827873|gb|EGK00595.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dysgonomonas gadei ATCC
BAA-286]
Length = 182
Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats.
Identities = 65/173 (37%), Positives = 105/173 (60%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI V I++ R F D RG+F ++Y +E + F+QDN S S G +RGLH+Q
Sbjct: 7 NIKGVWIIEPRVFTDERGYFMESYRKDAFEEHIGRVEFIQDNESKS-TRGVLRGLHYQTG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
YAQAKLVR + G + D+ VD+R++SPT+G +++E++ +N Q+++P GFAHGF+ L
Sbjct: 66 KYAQAKLVRVLKGSVLDVVVDLRKSSPTFGKSLAVELTEDNKKQLFVPRGFAHGFLVLSP 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
YKV + Y+ +++ + W D +I+I W + + L +S KD+ +
Sbjct: 126 EAIFSYKVDNMYAPGYEASLLWNDPTININWGIKEEEL-ILSAKDKAGKLFTE 177
>gi|238916051|ref|YP_002929568.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium eligens ATCC
27750]
gi|238871411|gb|ACR71121.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium eligens ATCC
27750]
Length = 203
Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats.
Identities = 76/197 (38%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ D+RG+F +TYS + ++E G+ FVQDN S S G +RGLHFQ+
Sbjct: 12 GIEGLCVITPAVHGDNRGYFMETYSQRDMEEAGININFVQDNQSMS-TKGVLRGLHFQKH 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR I G +FD+AVD+R +S TYG W + ++ N Q IP GFAHGF+ L
Sbjct: 71 -FPQTKLVRAIKGAVFDVAVDLRTDSETYGKWYGILLTEENKKQFLIPKGFAHGFLVLTD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YK DFY + G+AW D +I I WP L D ++S+K
Sbjct: 130 TAEFCYKCDDFYHPNDEGGLAWNDPAIGIEWPELTGTYNGSASGEGYALSDGTKLNLSDK 189
Query: 166 DQNLPFLNQIDSPFEYD 182
DQ L ++ F++D
Sbjct: 190 DQLWDTL---ENTFKFD 203
>gi|9957858|gb|AAG09533.1|AF279623_4 dTDP-6-deoxy-D-glucose-3,5-epimerase [Salmonella enterica]
Length = 182
Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats.
Identities = 77/176 (43%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQR 60
I V IL+ F + RG+F ++++ ++ + L FVQDNHS S +RGLH+Q
Sbjct: 7 EIPDVFILEPLVFVNERGFFMESFNHRVFETLLDTKVNFVQDNHSKS-TKNVVRGLHYQT 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRCI+G ++D+AVD+R S TYGCWV +E+SA N Q++IP GFAHGF+TL
Sbjct: 66 EPYAQGKLVRCISGAVYDVAVDLRSTSQTYGCWVGVELSALNMRQLWIPEGFAHGFLTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
N E +YK T++Y+ E + + + D +DI WP+ + VS+KD+ I
Sbjct: 126 DNVEFLYKTTNYYNKESERCIRYNDPDLDIIWPISNKDNIIVSDKDKKGILFRDIK 181
>gi|307130156|ref|YP_003882172.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dickeya dadantii 3937]
gi|306527685|gb|ADM97615.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dickeya dadantii 3937]
Length = 178
Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats.
Identities = 70/174 (40%), Positives = 101/174 (58%), Gaps = 6/174 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+I++ + F D+RG+F +T+ +E+ + FVQDNHS S G +RGLHFQ
Sbjct: 8 IQGVKIIQPKVFGDARGFFLETFEKNRYQEMLDIDLDFVQDNHSRSAK-GVLRGLHFQTT 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+ VDIR +SP+YG W + +S N Q +IP G AHGF+ L
Sbjct: 67 NP-QGKLVRVVRGEVFDVVVDIRPDSPSYGRWEGVVLSEENKTQFWIPPGLAHGFVVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK TD+Y+ H+ + W D I I WP+ P +SEKD+ ++
Sbjct: 126 LADFEYKCTDYYNPAHEGCLLWNDADIAIDWPI---ATPLLSEKDKKGKAFKEL 176
>gi|332705308|ref|ZP_08425386.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lyngbya majuscula 3L]
gi|332355668|gb|EGJ35130.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lyngbya majuscula 3L]
Length = 181
Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats.
Identities = 82/176 (46%), Positives = 112/176 (63%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V IL+ R F D RG+F ++Y+ ++L + G+ FVQDN+S S G +RGLH+Q
Sbjct: 7 KIPEVLILEPRVFGDDRGFFFESYNKRVLADKAGITAEFVQDNYSRSAQ-GVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G IFD+AVDIR++SPT+G WVS +SA N QI+IP GFAHGF+ +
Sbjct: 66 QQP-QGKLVRVLLGTIFDVAVDIRKSSPTFGQWVSCLLSAENKQQIWIPAGFAHGFLVVS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EV+YK TDFY+ +H+ + W D + I WPL D+ PS+S KDQ +
Sbjct: 125 EFAEVLYKTTDFYAPDHERTIVWNDPDLAIHWPLTDS--PSLSAKDQAGKSFKTAE 178
>gi|17545404|ref|NP_518806.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia solanacearum
GMI1000]
gi|17427696|emb|CAD14215.1| probable dtdp-4-dehydrorhamnose 3,5-epimerase protein [Ralstonia
solanacearum GMI1000]
Length = 183
Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats.
Identities = 69/175 (39%), Positives = 107/175 (61%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++++++ +++ G++ FVQDNHS S +RGLH+Q
Sbjct: 10 IPEVLILEPKVFGDDRGFFFESFNARAFEQVTGVKRTFVQDNHSRSAR-NVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G +FD+AVD+R+ SPT+G WV + +SA N Q+++P GFAHGF+
Sbjct: 69 -HPQGKLVRVTVGEVFDVAVDLRKRSPTFGKWVGVTLSAENKRQLWVPEGFAHGFVVTSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD++ EH+ + W D + I WP+ T P ++ KD D
Sbjct: 128 HAEFLYKTTDYWYAEHERSIVWNDPDLGIEWPVQGT--PVLAAKDAAGARFASAD 180
>gi|254281914|ref|ZP_04956882.1| dTDP-4-dehydrorhamnose 3,5-epimerase [gamma proteobacterium
NOR51-B]
gi|219678117|gb|EED34466.1| dTDP-4-dehydrorhamnose 3,5-epimerase [gamma proteobacterium
NOR51-B]
Length = 183
Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 106/173 (61%), Gaps = 2/173 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V +LK R F D RG+F + ++ + + G+ FVQDNHS S G +RGLHFQ
Sbjct: 8 LSGVMLLKPRVFGDERGFFLEAWNQRTYADAGIDVHFVQDNHSRSRQ-GILRGLHFQTE- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR +G +FD+ VD+R +SPT G W +SA+N Q++IP GFAHGF L +
Sbjct: 66 QTQGKLVRVTSGSVFDVVVDLRADSPTCGQWYGATLSASNHEQLWIPPGFAHGFYVLSES 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ +YK +D+Y E + +AW D S+ I WPL++ P +S KD ++Q+
Sbjct: 126 ADFLYKCSDYYHPESELTLAWNDPSVGIEWPLVNDQPPQLSAKDATGLPIDQV 178
>gi|221213794|ref|ZP_03586768.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase) (dTDP-L-rhamnose synthetase)
[Burkholderia multivorans CGD1]
gi|221166583|gb|EED99055.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase) (dTDP-L-rhamnose synthetase)
[Burkholderia multivorans CGD1]
Length = 183
Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats.
Identities = 76/175 (43%), Positives = 112/175 (64%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F +++++K E FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPKVFGDARGFFFESFNAKEFVEYIEPGVEFVQDNHSRSSK-GVLRGLHYQLQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KL+R IAG + D++VDIRR+SPT+G WV++ +SA+N Q+++P GFAHGF+ L
Sbjct: 69 -RPQGKLLRVIAGEVLDVSVDIRRSSPTFGRWVAVNVSADNKRQVWVPRGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EV+YK TD++ EH+ +AW D + I WPL PS+S KD P L +
Sbjct: 128 YAEVLYKTTDYWYPEHERQIAWNDPELGIEWPLDAP--PSLSAKDAAAPLLVNAE 180
>gi|291527356|emb|CBK92942.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium rectale M104/1]
Length = 216
Score = 253 bits (647), Expect = 9e-66, Method: Composition-based stats.
Identities = 82/196 (41%), Positives = 115/196 (58%), Gaps = 21/196 (10%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ D+RG+F +TY+SK ++E G+ VFVQDN S S G +RGLHFQ+
Sbjct: 26 GIEGLCIIEPTVHGDNRGYFMETYNSKDMQEAGIDRVFVQDNQSCS-TKGVLRGLHFQKE 84
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y QAKLVR + G +FD+AVD+R +S TYG W +E++ N Q IP GFAHGF+ L
Sbjct: 85 -YPQAKLVRAVKGSVFDVAVDLRSDSKTYGKWFGVELTEENKKQFLIPEGFAHGFLVLSD 143
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YKVTDF+ + +SG+AW D +I I WP L D ++S+K
Sbjct: 144 VAEFCYKVTDFWHLGDESGLAWNDPAIGIEWPQLVGEYPGSADGSGYTLEDGTPINLSDK 203
Query: 166 DQNLPFLNQIDSPFEY 181
DQ L ++ F++
Sbjct: 204 DQKWETL---ENTFKF 216
>gi|282881317|ref|ZP_06289997.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella timonensis CRIS
5C-B1]
gi|281304793|gb|EFA96873.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella timonensis CRIS
5C-B1]
Length = 184
Score = 253 bits (647), Expect = 9e-66, Method: Composition-based stats.
Identities = 71/174 (40%), Positives = 108/174 (62%), Gaps = 2/174 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ + F D+RG+F + + + F+QDN S S G +RGLH+Q+
Sbjct: 8 IQGVWIIEPKVFNDARGYFFEAWKQAEFNAHIGEVNFIQDNESQSS-YGVLRGLHYQKGA 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+QAKLVR I G + D+AVD+R++SPT+G V++E+SA+N Q++IP GFAHGF+ L
Sbjct: 67 YSQAKLVRVIQGSVLDVAVDLRKSSPTFGKHVAVELSADNKRQLFIPRGFAHGFLVLSQE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YKV + Y+ +H++G+ W D+ ++I WPL D SEKD N + +
Sbjct: 127 AIFTYKVDNVYAPQHEAGIRWNDEDLNIQWPL-DPACFITSEKDLNACSFREAE 179
>gi|241203189|ref|YP_002974285.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240857079|gb|ACS54746.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 188
Score = 253 bits (647), Expect = 9e-66, Method: Composition-based stats.
Identities = 87/181 (48%), Positives = 116/181 (64%), Gaps = 2/181 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V+ + +F D RG+FS+ + + FVQDN S S GT+RGLHFQ
Sbjct: 9 LEIGDVKKVTPARFGDPRGYFSEVFKDFWFRTNVADVSFVQDNESLSAQPGTVRGLHFQS 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVRC+ G + D+AVDIR SPTYG WVS E+S NG Q+++P GFAHGF+TLE
Sbjct: 69 PPFAQGKLVRCLRGALLDVAVDIRHGSPTYGKWVSAELSPENGSQLWVPAGFAHGFVTLE 128
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T + YKVT YS EHD GV W D I I WP +D +S+KD P L+++ + F+
Sbjct: 129 PDTIISYKVTALYSAEHDCGVRWNDAEIGIEWPQMDGY--VLSDKDNKQPRLSELPTYFQ 186
Query: 181 Y 181
+
Sbjct: 187 F 187
>gi|332297029|ref|YP_004438951.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Treponema brennaborense DSM
12168]
gi|332180132|gb|AEE15820.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Treponema brennaborense DSM
12168]
Length = 193
Score = 253 bits (647), Expect = 9e-66, Method: Composition-based stats.
Identities = 75/184 (40%), Positives = 105/184 (57%), Gaps = 3/184 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I+ + ++ + F DSRG+F +TYS K GL FVQDN S S G +RGLHFQ+
Sbjct: 9 SISGLYEIQPKLFGDSRGYFLETYSEKDFFAAGLTMRFVQDNQS-SSSKGVLRGLHFQKR 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR ++G ++D+AVD+R SPT+G + + +SA Q YIP GFAHGF L
Sbjct: 68 -FPQGKLVRALSGEVYDVAVDLRVGSPTFGQYHGVVLSAEKQNQFYIPAGFAHGFFVLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP-LLDTILPSVSEKDQNLPFLNQIDSPFE 180
YK TDFY E + G+ W D + I W L P +S KD P + + F+
Sbjct: 127 TAVFAYKCTDFYHPEDEGGIPWNDPAFGIDWRALAPGTEPILSAKDTAHPAFDPAAAYFD 186
Query: 181 YDGL 184
+G+
Sbjct: 187 ENGV 190
>gi|189347269|ref|YP_001943798.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium limicola DSM 245]
gi|189341416|gb|ACD90819.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium limicola DSM 245]
Length = 192
Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats.
Identities = 73/187 (39%), Positives = 114/187 (60%), Gaps = 3/187 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ + F D RG+F +TY +++ + FVQDN S S G +RGLH+Q+PP
Sbjct: 8 IPDVLIIEPKVFGDERGYFLETYRQDVIESRIGKVGFVQDNESKSS-YGVLRGLHYQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q+KLVR ++G + DIAVD+R+ SP +G +V +E+SA ++IP GFAHGF+ L
Sbjct: 67 FTQSKLVRAVSGSVLDIAVDLRKGSPWFGKYVGVELSAERKNMLWIPKGFAHGFVVLSTE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK ++Y+ +HD+GV W D+ + I W + ++ + VS+KD ++D F YD
Sbjct: 127 AVFAYKCDNYYAPDHDAGVLWNDRELAIDWQIPESDI-RVSDKDAKQQLFAEVDC-FIYD 184
Query: 183 GLPLLSL 189
+L
Sbjct: 185 EFKRETL 191
>gi|88705326|ref|ZP_01103037.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Congregibacter
litoralis KT71]
gi|88700416|gb|EAQ97524.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Congregibacter
litoralis KT71]
Length = 182
Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats.
Identities = 68/173 (39%), Positives = 98/173 (56%), Gaps = 2/173 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V +L + F D RG+F ++++++ KE G FVQDNHS S G +RGLH+Q
Sbjct: 8 LPGVYLLTPQVFGDERGFFVESWNAEAFKEAGFDLHFVQDNHSRSAQ-GILRGLHYQTA- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR AG ++D+AVD+RR+SPT G W + + A +++P GFAHGF
Sbjct: 66 HTQGKLVRVTAGSVYDVAVDLRRDSPTLGQWYGVTLDAKTQQMLWVPPGFAHGFYVTSEY 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK TD Y + +AW D + I WPL+D P++S KDQ
Sbjct: 126 ADFQYKCTDKYDPGSEVSIAWDDPELAIDWPLVDGKEPALSAKDQTGLAFRDA 178
>gi|213023410|ref|ZP_03337857.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 165
Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats.
Identities = 73/151 (48%), Positives = 100/151 (66%), Gaps = 2/151 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ + +E +G + FVQDNHS S +RGLHFQR
Sbjct: 9 IPDVLILEPKVFGDERGFFFESYNQQTFEESIGRKVTFVQDNHSKS-KKNVLRGLHFQRG 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVRC G +FD+AVDIR+ SPT+G WV + +SA N Q++IP GFAHGF+TL
Sbjct: 68 ENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW 152
E +YK T++YS + + W D++I I W
Sbjct: 128 YAEFLYKATNYYSPSSEGSILWNDETIGIEW 158
>gi|190569148|ref|ZP_03022046.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis
Tsiankovskii-I]
gi|190559731|gb|EDV13718.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus anthracis
Tsiankovskii-I]
Length = 181
Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats.
Identities = 83/178 (46%), Positives = 121/178 (67%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDDRGFFTESYNKKVLETLGVTHSFVQDNVSYSAEAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V YKV ++YS +HDSGV W DK + I WP+ P +S+KD+ LP L + + F
Sbjct: 127 HTIVRYKVDEYYSADHDSGVLWNDKELAIPWPVTS---PILSDKDRILPLLQECEDSF 181
>gi|307302365|ref|ZP_07582123.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica BA175]
gi|306914403|gb|EFN44824.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica BA175]
Length = 184
Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats.
Identities = 72/179 (40%), Positives = 101/179 (56%), Gaps = 5/179 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ + F D RG+F +T+ + K G+ D FVQDN S S G +RGLHFQ+
Sbjct: 7 KIKDLLIIEPKVFGDDRGFFYETFQKERYKAAGIIDDFVQDNRSRS-TKGVLRGLHFQKT 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLV G +FD+AVD+R NS T+G + ++ ++ N LQ Y+P GF HGF L
Sbjct: 66 -KPQGKLVTVTEGEVFDVAVDLRPNSETFGQYEAIILTGANKLQFYVPPGFGHGFCVLSD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ YK TD+Y +SG+ W D ++I WP+ P +SEKD LP L I
Sbjct: 125 IADFQYKCTDYYDPADESGLLWSDAELNIQWPID---APLLSEKDAQLPTLMDIKDKLV 180
>gi|167763054|ref|ZP_02435181.1| hypothetical protein BACSTE_01420 [Bacteroides stercoris ATCC
43183]
gi|167699394|gb|EDS15973.1| hypothetical protein BACSTE_01420 [Bacteroides stercoris ATCC
43183]
Length = 182
Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats.
Identities = 68/175 (38%), Positives = 108/175 (61%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V I++ + F D+RG+F + + + + FVQDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWIIEPKVFNDARGYFMEAFKEEEFRANIGDVHFVQDNESKSS-FGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR I G++ D+AVD+RR+SPT+G +VS+E+S N Q +IP GFAHGF+ L
Sbjct: 66 EYSQAKLVRVIKGKVLDVAVDLRRSSPTFGKYVSVELSEENKRQFFIPRGFAHGFLVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YKV + Y+ + ++ + + D++I I WP+ ++ +SEKD + +
Sbjct: 126 EAIFTYKVDNGYAPQAEASIRFNDETIGIDWPVAESQF-ILSEKDGHAVSFKDAE 179
>gi|271499224|ref|YP_003332249.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dickeya dadantii Ech586]
gi|270342779|gb|ACZ75544.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dickeya dadantii Ech586]
Length = 183
Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats.
Identities = 72/176 (40%), Positives = 103/176 (58%), Gaps = 4/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
NI V+I++ F D RG+F +T+ K ++L G FVQDNHS S +RGLH Q
Sbjct: 7 NIPDVKIIEPTVFGDERGFFMETWQQKKFEDLVVGHACSFVQDNHSKSNK-NILRGLHIQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR ++G +FD+AVD+R++S T G WV + +SA N Q++IP GFAHGF
Sbjct: 66 TEN-TQGKLVRVVSGEVFDVAVDVRKDSATLGKWVGVYLSAENKRQLWIPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK T++Y + + W D +DI WPLL+ P +S+KD+ +
Sbjct: 125 SEEAEFVYKCTNYYHPASEISILWSDSFLDIHWPLLNNQEPLLSDKDKKGMSFEKF 180
>gi|329962830|ref|ZP_08300715.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides fluxus YIT 12057]
gi|328529387|gb|EGF56300.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides fluxus YIT 12057]
Length = 182
Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats.
Identities = 68/174 (39%), Positives = 107/174 (61%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
IN V +++ + F D+RG+F + + + + F+QDN S S G +RGLH+Q+
Sbjct: 7 EINGVWLIEPKVFRDARGYFMEAFKEEEFRAHIGDVHFIQDNESKSS-FGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR + GR+ D+AVD+RR+SPT+G +VS+E+S N Q +IP GFAHGF+ L
Sbjct: 66 EYSQAKLVRVLKGRVLDVAVDLRRSSPTFGKYVSVELSEENKRQFFIPRGFAHGFLVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YKV + Y+ + ++ + + D++I I WP+ + L +SEKD +
Sbjct: 126 EAVFTYKVDNAYAPQAEASIRFNDETIGIEWPVAEEQL-LLSEKDGHAVSFKDA 178
>gi|312142996|ref|YP_003994442.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Halanaerobium sp.
'sapolanicus']
gi|311903647|gb|ADQ14088.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Halanaerobium sp.
'sapolanicus']
Length = 183
Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats.
Identities = 81/175 (46%), Positives = 110/175 (62%), Gaps = 3/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + IL F D RGWF ++YS K +ELG+ F+QDN+S+S G +RGLHFQ
Sbjct: 7 KIQGLYILSADVFADQRGWFMESYSLKKFRELGIDINFIQDNYSYSKKRGVLRGLHFQTE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ+KLVRCI GRI DIAVD+R+ S TY + +S N Q+ IP GFAHGF+ LE
Sbjct: 67 PKAQSKLVRCIKGRILDIAVDLRKESLTYKKHCKVLLSQKNKKQLLIPKGFAHGFICLED 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
TEV YKV ++Y EH+ + + D ++I W + + I +S KD+N P L ++
Sbjct: 127 ETEVYYKVDEYYFPEHEKSIFYNDPELNIDWEIENVI---LSNKDKNAPLLKDLE 178
>gi|254673656|emb|CBA09229.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
alpha275]
Length = 190
Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats.
Identities = 73/174 (41%), Positives = 102/174 (58%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLHYQTEN 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R SPT+G WV +SA N Q++IP GFAHGF L
Sbjct: 72 -TQGKLVRVVVGEVFDVAVDMREGSPTFGKWVGEILSAQNQCQLWIPEGFAHGFCVLGDA 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EV+YK TD+Y E + + W D ++ I WPL P +S KD Q +
Sbjct: 131 AEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPL--QTAPLLSPKDLAGKAWAQAE 182
>gi|218530621|ref|YP_002421437.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium
chloromethanicum CM4]
gi|218522924|gb|ACK83509.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium
chloromethanicum CM4]
Length = 183
Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats.
Identities = 85/178 (47%), Positives = 112/178 (62%), Gaps = 1/178 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+ + ++ D RGWFS+ Y + LL E G+ + FVQDN SFS GTIRGLHFQ
Sbjct: 7 EIPAVKRVIPKRHGDDRGWFSEVYRADLLAEHGIANAFVQDNQSFSAPAGTIRGLHFQVA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKLVR +AG I D+AVD+R +SPTYG V++ + A G Q+++P GFAHGF TLE
Sbjct: 67 PNAQAKLVRVLAGAILDVAVDLRSDSPTYGRHVAVRLDATGGEQLFVPAGFAHGFCTLEP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V YKV +YS D + W D +I I WP+ + +S KD+ P L + F
Sbjct: 127 DTMVAYKVDAYYSPADDRNLRWNDPAIGIAWPVAE-ADAILSGKDKAAPLLADLGRVF 183
>gi|307728805|ref|YP_003906029.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. CCGE1003]
gi|307583340|gb|ADN56738.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. CCGE1003]
Length = 183
Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats.
Identities = 68/175 (38%), Positives = 109/175 (62%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F ++++++ E D FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPKVFGDARGFFYESFNAREFAEKVQPDVEFVQDNHSRSAK-GVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR G +FD+AVDIR++SP +G W + +S +N Q++IP GFAHGF+ L
Sbjct: 69 -HAQGKLVRVTEGDVFDVAVDIRKSSPNFGKWEGVVLSGDNHRQLWIPPGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD++ EH+ + W D +I + WP+ P ++ KD L++ +
Sbjct: 128 TAQFLYKTTDYWYPEHERSIVWNDPAIGVEWPI--DFEPVLAAKDAAGKRLSEAE 180
>gi|300717500|ref|YP_003742303.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Erwinia billingiae Eb661]
gi|299063336|emb|CAX60456.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Erwinia billingiae Eb661]
Length = 181
Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++ V I + F D+RG+F +++S + E +G FVQDNHS S G +RGLH+Q
Sbjct: 7 SLTDVLIFEPTVFGDTRGFFFESFSQRFFDESVGRHVNFVQDNHSKSAK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KLVRC+ G + DIAVDIR++S ++G WV + ++A N Q++IP GFAHGF+TL
Sbjct: 66 DPDAQGKLVRCVQGEVLDIAVDIRKSSSSFGKWVGVILNAENKRQLWIPEGFAHGFVTLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK T++Y+ + + W D I I W D +S+KD +
Sbjct: 126 DTAEFVYKTTNYYAKNSERSILWNDPEIGIDWKTED---VLLSDKDLLASEFKNAE 178
>gi|295675698|ref|YP_003604222.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. CCGE1002]
gi|295435541|gb|ADG14711.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. CCGE1002]
Length = 183
Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats.
Identities = 68/176 (38%), Positives = 108/176 (61%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQR 60
++ V+I++ + F D+RG+F +++++ E FVQDNHS S G +RGLH+Q
Sbjct: 9 SLPEVKIIEPKVFGDARGFFFESFNALEFAEKVEAGVEFVQDNHSRSAR-GVLRGLHYQI 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AQ KLVR + G +FD+AVDIR++SP +G WV + +S N Q+++P GFAHGF+ L
Sbjct: 68 Q-HAQGKLVRVVEGEVFDVAVDIRKSSPNFGKWVGVTLSVENHRQLWVPPGFAHGFVVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + +YK TD++ EH+ + W D +I I WP+ P ++ KD L +
Sbjct: 127 ESAQFLYKTTDYWFPEHERSIVWNDPAIGIEWPI--DFEPLLAAKDAAGKRLADAE 180
>gi|167623434|ref|YP_001673728.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella halifaxensis
HAW-EB4]
gi|167353456|gb|ABZ76069.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella halifaxensis
HAW-EB4]
Length = 189
Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats.
Identities = 77/183 (42%), Positives = 106/183 (57%), Gaps = 8/183 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-----DVFVQDNHSFSFDCGTIRGLH 57
I V + + + F D RG+F +T+ + L + FVQ+N S S +RGLH
Sbjct: 9 IPDVLLFEPKVFGDERGFFMETFRQSEFEALFAKVGMACPSFVQENMSRS-QKHVLRGLH 67
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
+Q + Q KLVR AG IFD+AVDIR+ S TYG W +SA N LQ+YIP GFAHGF+
Sbjct: 68 YQET-HPQGKLVRVTAGSIFDVAVDIRKASKTYGQWFGQVLSAENRLQMYIPPGFAHGFL 126
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL-PFLNQID 176
TL + ++IYK T +Y+ E + + W D ++I WPL + + P +SEKD FL
Sbjct: 127 TLSDHADIIYKCTAYYAAEFEKCITWNDPQLNIQWPLEEGVEPILSEKDGKADKFLGPRK 186
Query: 177 SPF 179
S F
Sbjct: 187 SRF 189
>gi|158605286|gb|ABW74896.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Sphingomonas sp. ATCC 53159]
Length = 188
Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats.
Identities = 83/182 (45%), Positives = 114/182 (62%), Gaps = 1/182 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V K+ D RG+FS+ + +L G++ +VQDN SFS GTIRGLH Q P
Sbjct: 8 ELSGVIEFTPPKYGDHRGFFSEVFKQSVLDAEGVEARWVQDNQSFSAAPGTIRGLHLQAP 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQAKLVR + G IFD+AVDIRR SPTYG WV +E+SA Q+ +P G+AHGFMTL
Sbjct: 68 PFAQAKLVRVLRGAIFDVAVDIRRGSPTYGKWVGVELSAEKWNQLLVPAGYAHGFMTLVP 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ E++YKV+ YS + + + W D + I WP + P +SEKD + ++PF Y
Sbjct: 128 DCEILYKVSAKYSKDSEMAIRWDDPDLAIAWP-DIGVEPVLSEKDAVATPFAEFNTPFFY 186
Query: 182 DG 183
G
Sbjct: 187 QG 188
>gi|225376959|ref|ZP_03754180.1| hypothetical protein ROSEINA2194_02601 [Roseburia inulinivorans DSM
16841]
gi|225211280|gb|EEG93634.1| hypothetical protein ROSEINA2194_02601 [Roseburia inulinivorans DSM
16841]
Length = 190
Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats.
Identities = 72/176 (40%), Positives = 106/176 (60%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I +++++ F D+RG+F +TY+ KE G+ FVQDN S S G +RGLHFQ
Sbjct: 12 GIAGLKVIEPTVFGDARGYFMETYNYNDFKEAGIDCEFVQDNQSAS-KKGVLRGLHFQI- 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G +FD+AVD+R S T+G W + +SA N Q +IP GFAHGF+ L
Sbjct: 70 NYPQDKLVRVVNGEVFDVAVDLREGSETFGKWFGVTLSAENKKQFFIPKGFAHGFIVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILP---SVSEKDQNLPFLNQ 174
E YKVTDFY + G+ W+D I + WP+ + + ++S+KD+ +++
Sbjct: 130 YAEFCYKVTDFYHPNDEGGLLWKDPEIGVEWPMPEGMTEADLTLSDKDKVWSGISE 185
>gi|240144742|ref|ZP_04743343.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseburia intestinalis L1-82]
gi|257203263|gb|EEV01548.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseburia intestinalis L1-82]
Length = 194
Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats.
Identities = 69/171 (40%), Positives = 101/171 (59%), Gaps = 5/171 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I +++++ F D+RG+F +TY+ KE G+ FVQDN S S G +RGLHFQ
Sbjct: 12 GIEGLKVIEPAVFGDARGYFMETYNYNDFKEAGIDCQFVQDNQSAS-KKGVLRGLHFQI- 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R S T+G W + +SA N Q ++P FAHGF+ L
Sbjct: 70 NHPQDKLVRVVNGEVFDVAVDLREGSETFGKWFGIVLSAENKKQFFVPKNFAHGFIVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL---PSVSEKDQNL 169
E YKVTDFY + G+ W D +I + WP+ + + +S+KD+
Sbjct: 130 YAEFCYKVTDFYHPNDEGGILWNDPAIGVEWPMPEGMTQADLILSDKDKVH 180
>gi|52144117|ref|YP_082711.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus E33L]
gi|51977586|gb|AAU19136.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus E33L]
Length = 181
Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats.
Identities = 83/178 (46%), Positives = 121/178 (67%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDDRGFFTESYNKKVLETLGVTHSFVQDNVSYSAEAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS +HDSGV W DK + I WP+ P +S+KD+ LP L + F
Sbjct: 127 HTIVMYKVDEYYSADHDSGVIWDDKELAIPWPVTS---PILSDKDRILPLLQECKDSF 181
>gi|260576534|ref|ZP_05844523.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sp. SW2]
gi|259021257|gb|EEW24564.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sp. SW2]
Length = 185
Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats.
Identities = 86/184 (46%), Positives = 110/184 (59%), Gaps = 7/184 (3%)
Query: 1 MNIN-----PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M I V IL +F D+RGWFS+T+++ + GL+ FVQDNHS S GT+RG
Sbjct: 1 MQIEPTALADVMILTPARFGDARGWFSETWNAARMAAAGLRADFVQDNHSMSAAVGTLRG 60
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LHFQ PP+AQ KLVRC G IFD+AVDIRR S YG WV +E++ N Q+ +P GF HG
Sbjct: 61 LHFQAPPHAQDKLVRCTRGAIFDVAVDIRRGSKGYGKWVGVELTPENRRQLLVPKGFLHG 120
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F+T +TEV YK +DFY+ + D V W ++ I W L P +S KD
Sbjct: 121 FVTRLPDTEVQYKCSDFYAPDCDGAVRWDSAALAIDWGLDCP--PILSHKDAQAVDFADF 178
Query: 176 DSPF 179
SPF
Sbjct: 179 SSPF 182
>gi|110640208|ref|YP_680418.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cytophaga hutchinsonii ATCC
33406]
gi|110282889|gb|ABG61075.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cytophaga hutchinsonii ATCC
33406]
Length = 181
Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats.
Identities = 76/181 (41%), Positives = 109/181 (60%), Gaps = 5/181 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + V ++ F D RG+F +TY+ + + GL FVQDNHS S G +RGLHFQ+
Sbjct: 6 LELKDVILISPNVFGDERGFFMETYNKAVFSKAGLDREFVQDNHSKSS-AGVLRGLHFQK 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVR G I+DI VD+R+NS TY + + + + +Y+P GFAHGF+++E
Sbjct: 65 NPYAQGKLVRATKGSIWDIVVDLRKNSATYKKAIKILLDDKDKRMLYVPEGFAHGFISIE 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
EV YK T+ Y+ E + G+ W D + I W + + P VS KDQ LP+L I+S
Sbjct: 125 D-CEVQYKCTNLYNKESEGGIRWNDPELGIDWGIEN---PVVSTKDQELPYLKDIESALN 180
Query: 181 Y 181
+
Sbjct: 181 F 181
>gi|289668426|ref|ZP_06489501.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 185
Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats.
Identities = 71/187 (37%), Positives = 104/187 (55%), Gaps = 9/187 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ F D RG+F +T++++ + GL FVQ N S S G +RGLH+Q P
Sbjct: 8 LPGCVVIEPAVFGDERGYFFETWNAERFGQHGLPTQFVQSNVSTSAK-GVLRGLHYQW-P 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV + G ++D+AVD+R SP +G W ++ +SA N Q +IP GFAHGF L
Sbjct: 66 RPQGKLVSVLEGEVYDVAVDVRHGSPNFGQWAAVVLSAENKKQFWIPEGFAHGFAVLSER 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
Y TD Y E D+GV W D +I I WP+ + P +S KD PFL + + +
Sbjct: 126 AVFSYLCTDVYVKEADAGVRWDDAAIGIDWPISN---PLLSAKDAAAPFLADVPA----E 178
Query: 183 GLPLLSL 189
LP+ +
Sbjct: 179 RLPVYTP 185
>gi|7592818|dbj|BAA94405.1| dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase [Actinobacillus
actinomycetemcomitans]
Length = 180
Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats.
Identities = 70/167 (41%), Positives = 102/167 (61%), Gaps = 4/167 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++L+ + F D RG+F +T+ + ++ FVQ+NHS S G +RGLH+Q
Sbjct: 7 KIPDVKLLEPQVFGDERGFFMETFRDEWFRKNVADRTFVQENHSKSIK-GVLRGLHYQTE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR ++G +FD+AVD+R NSPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 66 N-TQGKLVRVVSGAVFDVAVDMRENSPTFGQWVGEVLSAENKHQLWVPEGFAHGFYVLTG 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E YK TD+Y+ + + + W D+++ I WPL PS+S KD
Sbjct: 125 EAEFTYKCTDYYNPKAEYSLIWNDETVGIEWPLYGE--PSLSAKDLA 169
>gi|302028134|gb|ADK90948.1| RfbC [Neisseria meningitidis]
gi|302028155|gb|ADK90968.1| RfbC [Neisseria meningitidis]
gi|319411443|emb|CBY91858.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase; dTDP-L-rhamnose synthetase) [Neisseria
meningitidis WUE 2594]
Length = 190
Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats.
Identities = 72/174 (41%), Positives = 101/174 (58%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCNRTFVQENHSKSGK-GVLRGLHYQTEN 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L
Sbjct: 72 -TQGKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFCVLGDA 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EV+YK TD+Y E + + W D ++ I WPL P++S KD Q +
Sbjct: 131 AEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPLQGE--PNLSPKDLAGKTWAQAE 182
>gi|317153812|ref|YP_004121860.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio aespoeensis
Aspo-2]
gi|316944063|gb|ADU63114.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio aespoeensis
Aspo-2]
Length = 190
Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats.
Identities = 77/180 (42%), Positives = 115/180 (63%), Gaps = 1/180 (0%)
Query: 4 NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPY 63
+ +L+ R F+D RG+F ++YS + +G+ FVQDNH++S D +RG HFQ PP+
Sbjct: 9 PGLLVLEPRVFQDERGFFLESYSRETFSRVGIDCEFVQDNHAYSRDVCVLRGFHFQLPPH 68
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
AQAKLV G + D+ VD+R+ SPT+G + +SA N +++IP GF H ++T+ +T
Sbjct: 69 AQAKLVWVTRGAVLDVVVDLRKGSPTFGKCQHVILSAANFKRMFIPRGFGHAYVTIMPDT 128
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITW-PLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
E +YKV Y +H+ G+AW D I W P LD +P +SEKD+ L FL + DSPF ++
Sbjct: 129 EFLYKVDAPYRPDHECGLAWNDPDIGFDWSPALDGRMPVLSEKDRRLGFLAEFDSPFTHE 188
>gi|1098480|gb|AAC37051.1| rfbC [Neisseria meningitidis]
Length = 333
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 74/175 (42%), Positives = 102/175 (58%), Gaps = 4/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLHYQTEN 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R SPT+G WV +SA N Q++IP GFAHGF L
Sbjct: 72 -TQGKLVRVVVGEVFDVAVDMREGSPTFGKWVGEILSAQNQCQLWIPEGFAHGFCVLGDA 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
EV+YK TD+Y E + + W D ++ I WPL P +S KD Q S
Sbjct: 131 AEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPL--QTAPLLSPKDLAGKAWAQAKS 183
>gi|325203189|gb|ADY98642.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
M01-240355]
Length = 185
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 75/181 (41%), Positives = 104/181 (57%), Gaps = 9/181 (4%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
MNI V++LK + F D RG+F +T+ K + FVQ+NHS S G +RG
Sbjct: 1 MNIIDTALPDVKLLKPQVFTDGRGFFMETFRDGWFKTQVCERTFVQENHSKSGK-GVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHG
Sbjct: 60 LHYQTEN-TQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHG 118
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F L TE+ YK TD+Y E + + W D ++ I WPL P +S KD Q
Sbjct: 119 FYVLSDTTELTYKCTDYYKPEAEHSLIWNDPTVGIGWPL--QTAPLLSPKDLAGKTWAQA 176
Query: 176 D 176
+
Sbjct: 177 E 177
>gi|1314580|gb|AAC44073.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Sphingomonas sp. S88]
Length = 188
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 84/181 (46%), Positives = 115/181 (63%), Gaps = 1/181 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V K+ D RG+FS+ + L G++ +VQDN SFS GTIRGLH Q PP
Sbjct: 9 LSGVIEFTPPKYGDHRGFFSEVFKQSTLDAEGVEARWVQDNQSFSAAPGTIRGLHLQAPP 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQAKLVR + G I+D+AVDIRR SPTYG WV +E+SA+ Q+ +P G+AHGFMTL +
Sbjct: 69 FAQAKLVRVLRGAIYDVAVDIRRGSPTYGQWVGVELSADKWNQLLVPAGYAHGFMTLVPD 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
E++YKV+ YS E + + W D + ITWP + P +SEKD + ++PF Y
Sbjct: 129 CEILYKVSAKYSKESEMAIRWDDPDLAITWP-DIGVEPVLSEKDAVATPFAEFNTPFFYQ 187
Query: 183 G 183
G
Sbjct: 188 G 188
>gi|253583524|ref|ZP_04860722.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Fusobacterium varium ATCC
27725]
gi|251834096|gb|EES62659.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Fusobacterium varium ATCC
27725]
Length = 475
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 78/193 (40%), Positives = 116/193 (60%), Gaps = 6/193 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N+ + I++ F D RG+F ++Y+ +++G+ + FVQDNHS S G +RGLHFQ
Sbjct: 10 NLQGIYIIEPLVFGDDRGFFLESYNKSEFEKIGIFEEFVQDNHSKS-KKGVLRGLHFQTR 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
++QAKL+R I G+IFDI VDIR++S TYG W E+SA N +YI GFAHGF+ LE
Sbjct: 69 -HSQAKLIRVIKGKIFDIVVDIRKSSFTYGKWCGTELSAENKKMLYISKGFAHGFLALED 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPFLNQIDS 177
+TE+ YK +FY+ ++DSG+ W DK I+I W +SEKD+ +
Sbjct: 128 DTEIEYKCDEFYNAQYDSGIMWNDKDININWNFEKYGIKEEDIILSEKDKKHQSFKEYTE 187
Query: 178 PFEYDGLPLLSLN 190
+ + + L +
Sbjct: 188 KYIGENVLLTGGD 200
>gi|227824676|ref|ZP_03989508.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidaminococcus sp. D21]
gi|226905175|gb|EEH91093.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidaminococcus sp. D21]
Length = 203
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 76/189 (40%), Positives = 104/189 (55%), Gaps = 18/189 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ + ++ + D RG+F +TY+ ++E G+ FVQDN S S G +RGLHFQ+
Sbjct: 12 KIDGLCVITPTQHGDERGYFMETYNEHDMEEAGIHVKFVQDNQSMS-TKGVLRGLHFQKH 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR I GR+FD+AVD+R S TYG W +E++ N Q IP GFAHGF+ L
Sbjct: 71 -FPQCKLVRVIRGRVFDVAVDLRAQSKTYGKWYGVELTEENKKQFLIPEGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YKV DF+ + + G+AW D I I WP L D +SEK
Sbjct: 130 VAEFCYKVNDFWHPDDEGGLAWNDPEIGIDWPEVGGVYPGNASAEGYTLQDGTKLMLSEK 189
Query: 166 DQNLPFLNQ 174
DQ L++
Sbjct: 190 DQKWLGLDE 198
>gi|319411428|emb|CBY91840.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase; dTDP-L-rhamnose synthetase) [Neisseria
meningitidis WUE 2594]
Length = 184
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K FVQ+NHS S G +RGLH+Q
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCNRTFVQENHSKSGK-GVLRGLHYQTEN 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L
Sbjct: 72 -TQGKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFCVLGDA 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
EV+YK TD+Y E + + W D ++ I WPL P++S KD L +
Sbjct: 131 AEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPLQGE--PNLSPKDLAGKVLAEA 181
>gi|119475336|ref|ZP_01615689.1| dTDP-4-dehydrorhamnose 3,5-epimerase [marine gamma proteobacterium
HTCC2143]
gi|119451539|gb|EAW32772.1| dTDP-4-dehydrorhamnose 3,5-epimerase [marine gamma proteobacterium
HTCC2143]
Length = 184
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 73/174 (41%), Positives = 102/174 (58%), Gaps = 5/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I + F D RG+F +TY++ KE G+ + F+QDN SFS G +RGLH+Q
Sbjct: 7 ELPGVIIFEPTVFGDDRGYFLETYNADRYKEAGISENFIQDNLSFS-RKGILRGLHYQT- 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLV+ I G ++D+AVD+R SPT+G W +S +N QIY+P GFAHGF+
Sbjct: 65 PMEQGKLVQVIKGEVYDVAVDVRAGSPTFGHWYGSVLSESNKRQIYVPAGFAHGFVVTSD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK T+ Y+ ++ +AW D + I WP+ D P VSEKDQ L +
Sbjct: 125 TALFSYKCTELYNPTNERRIAWNDTDLAINWPITD---PLVSEKDQQAVLLKDL 175
>gi|77920189|ref|YP_358004.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pelobacter carbinolicus DSM
2380]
gi|77546272|gb|ABA89834.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pelobacter carbinolicus DSM
2380]
Length = 168
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 77/169 (45%), Positives = 109/169 (64%), Gaps = 5/169 (2%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
++ + F D RG+F ++++ K + GL FVQDNHS S G +RGLH+Q QAK
Sbjct: 2 IEPKIFGDQRGFFFESFNQKQWQNTTGLSTRFVQDNHSRSAR-GVLRGLHYQIE-QVQAK 59
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LVR I G +FD+AVDIRR+SPT+G WV + +SA N Q++IP GFAHGF+ L E +Y
Sbjct: 60 LVRVIVGEVFDVAVDIRRHSPTFGKWVGVRLSAENKRQLWIPEGFAHGFLVLSEVAEFLY 119
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
K TD+Y+ EH+ + W D + I WP + P++SEKD+ LN+ +
Sbjct: 120 KTTDYYAPEHERAIIWNDPDLAIHWPTDEE--PTLSEKDKRALPLNEAE 166
>gi|325261283|ref|ZP_08128021.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium sp. D5]
gi|324032737|gb|EGB94014.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium sp. D5]
Length = 193
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 76/171 (44%), Positives = 104/171 (60%), Gaps = 2/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + +++ DSRG+F +TY+ + E GL VFVQDN S S G +RGLHFQ
Sbjct: 21 IEGLYVIEPTVHRDSRGYFIETYNQNDMHEAGLDLVFVQDNQSMS-TKGVLRGLHFQNQ- 78
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q KLVR I G ++D+AVD+R+NS TYG W LE+S N Q YI GFAHGF+ +
Sbjct: 79 YPQGKLVRVIQGSVYDVAVDVRKNSKTYGQWFGLELSEENNKQFYISEGFAHGFLVMSDV 138
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+KVTDF+ +++ G+ W D +I + WPL P +SEKD++ P
Sbjct: 139 ARFCFKVTDFWHPDNEIGIPWDDSAIGVEWPLKKGQEPIISEKDKHYPGFA 189
>gi|206561477|ref|YP_002232242.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase [Burkholderia
cenocepacia J2315]
gi|198037519|emb|CAR53456.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase [Burkholderia
cenocepacia J2315]
Length = 183
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 72/175 (41%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ R F D+RG+F ++++ K E FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPRVFGDARGFFYESFNGKEFAERVEPGVEFVQDNHSRSSK-GVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVDIR+NSP +G WV + +S +N Q+++P GFAHGF+ L
Sbjct: 69 -HAQGKLVRVVEGEVFDVAVDIRKNSPNFGKWVGVVLSDDNHRQLWVPPGFAHGFVVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD++ EH+ + W D I I WP+ P ++ KD L++ D
Sbjct: 128 AAQFLYKTTDYWFPEHERSIVWNDPEIGIEWPI--DFEPLLAVKDAAGKQLSEAD 180
>gi|161869080|ref|YP_001598246.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
053442]
gi|161594633|gb|ABX72293.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
053442]
Length = 185
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 72/174 (41%), Positives = 101/174 (58%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLHYQTEN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L
Sbjct: 67 -TQGKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFCVLGDA 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EV+YK TD+Y E + + W D ++ I WPL P +S KD Q +
Sbjct: 126 AEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPL--QTAPLLSPKDLAGKTWAQAE 177
>gi|288942437|ref|YP_003444677.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Allochromatium vinosum DSM
180]
gi|288897809|gb|ADC63645.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Allochromatium vinosum DSM
180]
Length = 189
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 79/173 (45%), Positives = 104/173 (60%), Gaps = 3/173 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V IL+ + + D RG+F +TY + ELG+ VQDN SFS G +RGLH Q P
Sbjct: 8 IPGVLILEPKVWGDERGYFLETYRANQYAELGIPAPLVQDNQSFS-RRGVLRGLHAQH-P 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLV+ +AG +FD+AVDIRR SP +G WV + +S N Q +IP GFAHGF+ N
Sbjct: 66 RAQGKLVQVLAGEVFDVAVDIRRGSPHFGHWVGVTLSGENKRQFWIPPGFAHGFLVTGEN 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+YK TD+YS E + V W D + I WPL + P +S KD++ L I
Sbjct: 126 ALFVYKNTDYYSPETEFSVRWDDPDLGIDWPLA-GMTPELSAKDRDAARLRDI 177
>gi|158333602|ref|YP_001514774.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acaryochloris marina
MBIC11017]
gi|158303843|gb|ABW25460.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acaryochloris marina
MBIC11017]
Length = 187
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 79/188 (42%), Positives = 112/188 (59%), Gaps = 10/188 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V +++ R F D RG+F +TY + G+ ++FVQDNHS S GT+RGLHFQ
Sbjct: 8 LPGVLVIEPRVFSDQRGFFLETYHRQRYTASGIDEIFVQDNHSRSAH-GTLRGLHFQLKS 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR AG +FD+AVDIRR SP +G W +S N Q+Y+P GFAHGF L
Sbjct: 67 P-QGKLVRVSAGEVFDVAVDIRRGSPYFGQWFGEYLSGENNKQMYVPPGFAHGFCVLSET 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
+ +YK +DFY + GVAW D ++ I WP+ P +S+KD LP ++++ D
Sbjct: 126 ADFMYKCSDFYDPTDEQGVAWDDPALAIDWPID---QPILSKKDAALPKMSEL-----MD 177
Query: 183 GLPLLSLN 190
LP +++
Sbjct: 178 CLPRFAMS 185
>gi|296136994|ref|YP_003644236.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thiomonas intermedia K12]
gi|295797116|gb|ADG31906.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thiomonas intermedia K12]
Length = 187
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 74/179 (41%), Positives = 106/179 (59%), Gaps = 7/179 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V IL+ + F D RG+F ++Y+ K + GL FVQDNHS S G +RGLH+Q
Sbjct: 8 LPEVLILEPKVFGDERGFFFESYNRKTFALDTGLDVEFVQDNHSKSAQ-GVLRGLHYQLV 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G ++D+AVD+RR+SP + WV +E+SA N +++P GF HGF+ L
Sbjct: 67 -KPQGKLVRAVTGTVWDVAVDLRRSSPRFKQWVGVELSAQNQRLLWVPPGFGHGFVVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPFLNQID 176
+ +YK TD++ EHD +AW D + I WPL PS++ KD P L Q +
Sbjct: 126 TADFLYKTTDYWYPEHDRNLAWNDPELAIAWPLKGLHLPGGQPSLAAKDAAAPRLAQAE 184
>gi|58580417|ref|YP_199433.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58425011|gb|AAW74048.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 185
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 71/187 (37%), Positives = 104/187 (55%), Gaps = 9/187 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ F D RG+F +T++++ + GL FVQ N S S G +RGLH+Q P
Sbjct: 8 LPGCVVIEPAVFGDERGYFFETWNAERFGQHGLPTQFVQSNVSTSAK-GVLRGLHYQW-P 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV + G ++D+AVD+R SP +G W ++ +SA N Q +IP GFAHGF L
Sbjct: 66 RPQGKLVSVLEGEVYDVAVDVRHGSPNFGQWAAVVLSAENKKQFWIPEGFAHGFAVLSER 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
Y TD Y E D+GV W D +I I WP+ + P +S KD PFL + + +
Sbjct: 126 AVFSYLCTDVYVKEADAGVRWDDAAIGIDWPISN---PLLSAKDAAAPFLADVPA----E 178
Query: 183 GLPLLSL 189
LP+ +
Sbjct: 179 RLPVYTP 185
>gi|84386903|ref|ZP_00989927.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Vibrio splendidus
12B01]
gi|84378193|gb|EAP95052.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Vibrio splendidus
12B01]
Length = 181
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 100/166 (60%), Gaps = 6/166 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ F D RG+F +T++ K + L G FVQDNHS S G +RGLH+Q
Sbjct: 8 ITDVKIIEPSVFGDERGFFMETWNQKQFEGLVTGKPTQFVQDNHSKS-KKGILRGLHYQT 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR ++G +FD+AVDIR SPT+G WV +SA N Q+++P GFAHGF
Sbjct: 67 EN-TQGKLVRVVSGEVFDVAVDIREGSPTFGQWVGEYLSAENKRQLWVPEGFAHGFYVTS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y+ + + W DK I I WPLL +S+KD
Sbjct: 126 EEAEFVYKCTDYYNPNAEVSICWSDKDIGIEWPLLGEAF--LSKKD 169
>gi|16331184|ref|NP_441912.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechocystis sp. PCC 6803]
gi|1653678|dbj|BAA18590.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechocystis sp. PCC 6803]
Length = 182
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 79/180 (43%), Positives = 114/180 (63%), Gaps = 6/180 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ + F D RG+F ++Y+ K+ + +G++ FVQDNHSFS G +RGLH+Q
Sbjct: 8 IADVLILEPKVFGDERGFFFESYNDKVFQQAVGIEPHFVQDNHSFSRQ-GVVRGLHYQIQ 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G IFD+AVD+RRNSP++G WV ++ +N Q++IP GFAHGF L
Sbjct: 67 -HPQGKLVRVARGEIFDVAVDLRRNSPSFGQWVGCVLNDHNKRQLWIPAGFAHGFAVLSP 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
EV+YK TD+Y+ ++ + W D +I I W L T P +S KDQ L + + F++
Sbjct: 126 EAEVLYKATDYYAPSYERTLLWNDPAIGIDWSL--TTTPLLSLKDQRGLPLAEAEV-FDF 182
>gi|116687025|ref|YP_840272.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia cenocepacia
HI2424]
gi|116652740|gb|ABK13379.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia cenocepacia
HI2424]
Length = 193
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 65/175 (37%), Positives = 100/175 (57%), Gaps = 3/175 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V +++ F D+RG+F +++ + L++ G+ FVQDN S S G +RGLH+QR
Sbjct: 9 LPGVLLIEPGVFGDARGFFVESFRASWLRDAGVDATFVQDNQSRS-RRGVLRGLHYQRVN 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV G ++D+AVDIRR SP++G W + + ++IP GFAHGF L
Sbjct: 68 P-QGKLVHASRGAVYDVAVDIRRGSPSFGRWFGALLDDVSHRMLWIPPGFAHGFCVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ YK T +Y + D+GV W D +I I WP +S+KD+ P L ++ +
Sbjct: 127 ADFAYKCTQYYDPDSDAGVRWDDPAIGIDWP-DSGAPYQLSDKDRRQPPLAELAA 180
>gi|166713451|ref|ZP_02244658.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 185
Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats.
Identities = 72/187 (38%), Positives = 104/187 (55%), Gaps = 9/187 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ F D RG+F +T++++ + GL FVQ N S S G +RGLH+Q P
Sbjct: 8 LPGCVVIEPAVFGDERGYFFETWNAERFGQHGLPTQFVQSNVSTSAK-GVLRGLHYQW-P 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV + G ++D+AVD+R SP +G W ++ +SA N Q +IP GFAHGF L
Sbjct: 66 RPQGKLVSVLEGEVYDVAVDVRHGSPNFGQWAAVVLSAENNKQFWIPEGFAHGFAVLSER 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
Y TD Y E D+GV W D +I I WP+ D P +S KD PFL + + +
Sbjct: 126 AVFSYLCTDVYVKEADAGVRWDDAAIGIDWPISD---PLLSAKDAAAPFLADVPA----E 178
Query: 183 GLPLLSL 189
LP+ +
Sbjct: 179 RLPVYTP 185
>gi|163814426|ref|ZP_02205815.1| hypothetical protein COPEUT_00577 [Coprococcus eutactus ATCC 27759]
gi|158450061|gb|EDP27056.1| hypothetical protein COPEUT_00577 [Coprococcus eutactus ATCC 27759]
Length = 202
Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats.
Identities = 77/189 (40%), Positives = 103/189 (54%), Gaps = 18/189 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + +++ D+RG+F +TY+ K +KE G+ FVQDN S S G +RGLHFQ+
Sbjct: 12 GIEGLCVIEPAVHGDARGYFMETYNEKDMKEAGIDIHFVQDNQSMS-TKGVLRGLHFQKQ 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G +FD+AVD+R +S TYG W + +SA N Q IP GFAHGF+ L
Sbjct: 71 -YPQCKLVRAVRGTVFDVAVDLRSDSATYGKWYGVALSAENKKQFLIPEGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YKV DF+ + G+AW D I I WP L D ++S+K
Sbjct: 130 EAEFCYKVNDFWHPNDEGGMAWNDPEIGIVWPKLKGEYKGSASVEGYTLEDGTALNLSDK 189
Query: 166 DQNLPFLNQ 174
DQ L
Sbjct: 190 DQKWLGLKD 198
>gi|237718562|ref|ZP_04549043.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_2_4]
gi|229452022|gb|EEO57813.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_2_4]
Length = 182
Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats.
Identities = 64/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V +++ R F D RG+F + Y + + F+QDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPRVFSDERGYFMEAYKKEEFEANIGPVNFIQDNESKSS-FGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
++QAKLVR + G + D+AVD+R++SPT+G V + +S N Q +IP GFAHGF L
Sbjct: 66 EHSQAKLVRVLKGEVLDVAVDLRKSSPTFGKHVCVLLSEENKRQFFIPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
YKV + Y+ + ++ + + D+++ I WPL ++ + +S KD+ + FE
Sbjct: 126 EAVFTYKVDNKYAPQAEASILYNDETLGIDWPLAESQM-LLSAKDREGTAFKDA-AYFE 182
>gi|146294971|ref|YP_001185395.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella putrefaciens
CN-32]
gi|145566661|gb|ABP77596.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella putrefaciens
CN-32]
gi|319424481|gb|ADV52555.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella putrefaciens 200]
Length = 181
Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 108/176 (61%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ + F D RG+F ++++ + + G Q FVQDNHS S G +RGLH+Q
Sbjct: 7 KIADVKIIEPKVFGDERGFFFESFNQQQFEAAIGRQVQFVQDNHSKSSK-GVLRGLHYQG 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+AQAKLVRC+ G +FD+ VDIR+NS T+G W+ + ++A N Q++IP GFAHGF+TL
Sbjct: 66 SPHAQAKLVRCVVGEVFDVVVDIRKNSSTFGEWLGVSLTAENKRQLWIPQGFAHGFLTLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y + + W D ++I WP+ P +S KDQ
Sbjct: 126 DTAECLYKTTDYYHQASEGAIRWDDPQLNIQWPIKS---PLLSLKDQQAQTFLDFK 178
>gi|171463076|ref|YP_001797189.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171192614|gb|ACB43575.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 186
Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats.
Identities = 75/167 (44%), Positives = 111/167 (66%), Gaps = 3/167 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V I++ + F D RGWF+++++++ + GL FVQDNHSFS T+RGLH+Q
Sbjct: 12 IHDVFIVEPKVFGDERGWFTESFNAEDFAKATGLDVRFVQDNHSFSRQ-WTLRGLHYQME 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR +AG +FD+AVDIR++SPT+G WV +E+SA N Q++IP AHGF+ L
Sbjct: 71 -KTQGKLVRVVAGSVFDVAVDIRKDSPTFGKWVGVELSAENHKQLWIPAQLAHGFLVLSP 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E +YK TD+Y + ++ +AW D ++ I WPL I P+++ KD
Sbjct: 130 TAEFLYKTTDYYHPQSEACLAWSDPTVGIEWPLPSGIQPNMNAKDAA 176
>gi|291550905|emb|CBL27167.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruminococcus torques L2-14]
Length = 202
Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats.
Identities = 75/189 (39%), Positives = 99/189 (52%), Gaps = 18/189 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ D+RG+F +TY+ +KE G+ FVQDN S S G +RGLHFQ+
Sbjct: 12 GIEGLCVITPAVHGDARGYFMETYNENDMKEAGIDIKFVQDNQSMS-TKGVLRGLHFQKQ 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G +FD+AVD+R S TYG W +E++ N Q IP GFAHGF+ L
Sbjct: 71 -YPQCKLVRTVRGSVFDVAVDLRLGSETYGKWYGVELTEENKKQFLIPKGFAHGFLVLSE 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YK DFY + G+AW D + I WP L D ++SEK
Sbjct: 130 IAEFCYKCDDFYHPNDEGGMAWNDPEMGIEWPQVKGEYLGNALAEGYELEDGTKLNLSEK 189
Query: 166 DQNLPFLNQ 174
DQ L
Sbjct: 190 DQKWLGLKD 198
>gi|91774154|ref|YP_566846.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanococcoides burtonii DSM
6242]
gi|91713169|gb|ABE53096.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein
[Methanococcoides burtonii DSM 6242]
Length = 183
Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats.
Identities = 74/179 (41%), Positives = 107/179 (59%), Gaps = 3/179 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I + ILK + F D RG+F ++Y++++L EL G + FVQDN S S G IRGLH+Q
Sbjct: 7 KIEDLYILKPKVFGDERGYFFESYNARVLDELVGKKYNFVQDNESRSS-YGVIRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PY+Q KLVR I G ++D+ VD+R+ S T+G WV +E+S +N Q IP GFAHGF L
Sbjct: 66 EPYSQTKLVRVIQGTVYDVVVDLRKESCTFGEWVGVELSEDNKKQFLIPKGFAHGFSVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
YK D+Y+ E + G+ + D +++I W + V++KD+ LP F
Sbjct: 126 ETAIFAYKCDDYYNPESEGGIMYDDPTLNIDWKVKKE-DAIVADKDKELPTFENTKISF 183
>gi|255691874|ref|ZP_05415549.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides finegoldii DSM
17565]
gi|260622427|gb|EEX45298.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides finegoldii DSM
17565]
Length = 182
Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats.
Identities = 63/174 (36%), Positives = 100/174 (57%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V +++ + F D RG+F + + + + FVQDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPKVFSDERGYFMEAFKKEEFEANIGPVDFVQDNESKSS-FGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
++QAKLVR I G + D+AVD+RR+SPT+G V + +S N Q +IP GFAHGF L
Sbjct: 66 EHSQAKLVRVIKGEVLDVAVDLRRSSPTFGKHVCVLLSEENKRQFFIPRGFAHGFAVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YKV + Y+ + ++ + + D ++ I WPL ++ + +S KD+
Sbjct: 126 EAIFTYKVDNKYAPQSEASIIYNDATLGIDWPLAESQM-LLSPKDKEGMAFKDA 178
>gi|163939116|ref|YP_001644000.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus weihenstephanensis
KBAB4]
gi|163861313|gb|ABY42372.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus weihenstephanensis
KBAB4]
Length = 181
Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats.
Identities = 83/178 (46%), Positives = 124/178 (69%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R FED RG+F+++Y+ K+L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFEDERGFFTESYNKKMLESLGITHSFVQDNVSYSAHSGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFKKWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS +HDSG+ W+DK + I WP+ + P +S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSADHDSGLLWEDKELSIPWPVTN---PILSDKDRILPLLQEYEDSF 181
>gi|218131068|ref|ZP_03459872.1| hypothetical protein BACEGG_02672 [Bacteroides eggerthii DSM 20697]
gi|217986772|gb|EEC53105.1| hypothetical protein BACEGG_02672 [Bacteroides eggerthii DSM 20697]
Length = 182
Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats.
Identities = 68/175 (38%), Positives = 107/175 (61%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ + F D+RG+F + + + FVQDN S S G +RGLH+Q+
Sbjct: 7 EIEGVWIIEPKVFNDARGYFMEAFKEGEFRANIGNVHFVQDNESKSS-FGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR I G++ D+AVD+R++SPT+G +VS+E+S N Q +IP GFAHGF+ L
Sbjct: 66 EYSQAKLVRVIKGKVLDVAVDLRQSSPTFGKYVSVELSEENKRQFFIPRGFAHGFLVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YKV + Y+ E ++ + + D+++ I WP+ ++ L +SEKD + +
Sbjct: 126 EAIFTYKVDNGYAPEAEASIRFNDETVGIDWPVAESQL-LLSEKDGHAVSFKDAE 179
>gi|323525016|ref|YP_004227169.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. CCGE1001]
gi|323382018|gb|ADX54109.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. CCGE1001]
Length = 183
Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats.
Identities = 68/175 (38%), Positives = 106/175 (60%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F +++++ E FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPKVFGDARGYFYESFNAVEFAEHVEAGVTFVQDNHSRSAK-GVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVDIR++SP +G WV + +S N Q+++P GFAHGF+ L
Sbjct: 69 -HAQGKLVRVVEGEVFDVAVDIRKSSPNFGKWVGVTLSVENHRQLWVPPGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + +YK TD++ EH+ + W D I I WP+ P ++ KD L +
Sbjct: 128 SAQFLYKTTDYWFPEHERSIVWNDPEIGIEWPI--DFEPLLAAKDAAGKRLGDAE 180
>gi|330815727|ref|YP_004359432.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia gladioli BSR3]
gi|327368120|gb|AEA59476.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia gladioli BSR3]
Length = 183
Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats.
Identities = 72/175 (41%), Positives = 110/175 (62%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V+I++ + F D+RG+F ++++ + E VFVQDNHS S G +RGLH+Q
Sbjct: 10 LSEVKIIEPKVFGDARGFFYESFNGREFAEKVDPQAVFVQDNHSRSAR-GVLRGLHYQIE 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR IAG + D+AVDIR++SP +G WV + +SA N Q+++P GFAHGF+TL
Sbjct: 69 -HAQGKLVRVIAGEVLDVAVDIRKSSPNFGKWVGVRLSAENARQLWVPPGFAHGFVTLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD++ E + + W D ++ I W + P ++ KD L Q D
Sbjct: 128 SAEFLYKTTDYWYPEFERSIVWNDPALGIDWQI--DFEPQLAAKDAAGSRLAQAD 180
>gi|261379149|ref|ZP_05983722.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria cinerea ATCC 14685]
gi|269144374|gb|EEZ70792.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria cinerea ATCC 14685]
Length = 185
Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats.
Identities = 73/174 (41%), Positives = 99/174 (56%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++LK + F+D RG+F +T+ KE FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLKPQVFKDGRGFFMETFRDGWFKENIADRTFVQENHSKSSK-GVLRGLHYQTEN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L
Sbjct: 67 -TQGKLVRVVVGEVFDVAVDMREGSPTFGKWAGTTLSAQNQYQLWIPEGFAHGFYVLSDT 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E+ YK TD+Y + + + W D +I I WPL P +S KD Q +
Sbjct: 126 AELTYKCTDYYKPKAEQVLIWNDPAIGIGWPL--QTSPLLSPKDLAGKTWAQAE 177
>gi|125973881|ref|YP_001037791.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum ATCC
27405]
gi|125714106|gb|ABN52598.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum ATCC
27405]
gi|316939921|gb|ADU73955.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum DSM
1313]
Length = 183
Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats.
Identities = 75/174 (43%), Positives = 113/174 (64%), Gaps = 3/174 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + +++ + F D+RG+F ++Y+ K E GL FVQDNH S G +RG+HFQR
Sbjct: 11 IEGLVVVEPKVFTDTRGFFFESYNKKAFCEFGLTMEFVQDNHIKS-RIGVLRGIHFQRK- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q +LVR I G+++D+AVD+R+NSPT+G W +E+SA N YIP F H F+TLE +
Sbjct: 69 FPQGRLVRVIKGKVYDVAVDLRKNSPTFGKWYGIELSAENKKMFYIPENFGHAFLTLEDD 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
TEV+ K T+ Y E +SG+ + D ++I WP ++ + +SEKD+NLP +
Sbjct: 129 TEVLCKTTNVYRPEFESGIIYNDPELNIDWPQIEGDI-VLSEKDKNLPTFKNAE 181
>gi|291540647|emb|CBL13758.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseburia intestinalis XB6B4]
Length = 194
Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats.
Identities = 68/171 (39%), Positives = 102/171 (59%), Gaps = 5/171 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I +++++ F D+RG+F +TY+ KE G+ FVQDN S S G +RGLHFQ
Sbjct: 12 GIEGLKVIEPAVFGDARGYFMETYNYNDFKEAGIDCQFVQDNQSAS-KKGVLRGLHFQI- 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR ++G +FD+AVD+R S T+G W + ++A N Q ++P FAHGF+ L
Sbjct: 70 NHPQDKLVRVVSGEVFDVAVDLREGSETFGKWFGIVLTAENKKQFFVPKNFAHGFIVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL---PSVSEKDQNL 169
E YKVTDFY + G+ W D +I + WP+ + + +S+KD+
Sbjct: 130 YAEFCYKVTDFYHPNDEGGILWNDPAIGVEWPMPEGMTRADLILSDKDKVH 180
>gi|291534628|emb|CBL07740.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseburia intestinalis M50/1]
Length = 194
Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats.
Identities = 68/171 (39%), Positives = 101/171 (59%), Gaps = 5/171 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I +++++ F D+RG+F +TY+ KE G+ FVQDN S S G +RGLHFQ
Sbjct: 12 GIEGLKVIEPAVFGDARGYFMETYNYNDFKEAGIDCQFVQDNQSAS-KKGVLRGLHFQI- 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R S T+G W + ++A N Q ++P FAHGF+ L
Sbjct: 70 NHPQDKLVRVVNGEVFDVAVDLREGSETFGKWFGIVLTAENKKQFFVPKNFAHGFIVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL---PSVSEKDQNL 169
E YKVTDFY + G+ W D +I + WP+ + + +S+KD+
Sbjct: 130 YAEFCYKVTDFYHPNDEGGILWNDPAIGVEWPMPEGMTRADLILSDKDKVH 180
>gi|281354883|ref|ZP_06241377.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Victivallis vadensis ATCC
BAA-548]
gi|281317763|gb|EFB01783.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Victivallis vadensis ATCC
BAA-548]
Length = 184
Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats.
Identities = 68/179 (37%), Positives = 102/179 (56%), Gaps = 2/179 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++++ R F DSRG+F + Y L G+ F+QDN SFS G +RGLH+Q PP
Sbjct: 8 IAGVKVIEPRLFGDSRGYFFEAYRKDLFAGAGIDARFIQDNESFS-TGGVLRGLHYQIPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y QAKLVR ++GR+ D+ VDIR SPT+G V++E+S + Q+++P G AHGF L
Sbjct: 67 YTQAKLVRVVSGRVLDVVVDIRLGSPTFGKHVAIELSGESKRQLFLPRGMAHGFAVLSPE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+YK +FY + + + D ++ I W L + +S +D+ + EY
Sbjct: 127 AVFVYKCDNFYCPASERCIRFDDPALGIDWRLPPETV-KLSPRDRRGVLFKDAELFEEY 184
>gi|114332204|ref|YP_748426.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosomonas eutropha C91]
gi|114309218|gb|ABI60461.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosomonas eutropha C91]
Length = 181
Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats.
Identities = 67/177 (37%), Positives = 106/177 (59%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + +++ + + D RG+F ++++ +E+ G FVQDNHS S +RGLH+Q
Sbjct: 6 LAIPDIYLIEPKVYGDERGFFFESFNQASFEEIIGRPVQFVQDNHSRSMK-NVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR + G +FD+A+D+R++S T+G W +SA N Q++IP GFAHGF+ L
Sbjct: 65 IQQP-QGKLVRVVQGEVFDVAIDLRKSSATFGQWTGEILSAENKYQLWIPEGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ H+ + W D ++DI WP I P++S KD +Q +
Sbjct: 124 SNTAEFLYKTTDYYAPVHERCILWNDPTLDIAWPA--GIQPALSTKDALGTPFDQAE 178
>gi|282801708|gb|ADB02818.1| RmlC [Escherichia coli]
Length = 180
Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats.
Identities = 73/178 (41%), Positives = 107/178 (60%), Gaps = 4/178 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+I+K ED RG+F ++++ K+ E+ + +FVQDNHS S+ GT+RGLHFQ
Sbjct: 7 KIEDVKIIKPIIHEDERGFFMESWNQKVFNEVIGKTIFVQDNHSKSYK-GTLRGLHFQTS 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR I G +FD+ VD+R S T+G WV + +S+ N Q++IP GFAHGF +
Sbjct: 66 NP-QGKLVRVINGEVFDVVVDLRHQSKTFGKWVGVYLSSVNNYQLWIPEGFAHGFYVVSD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ E +YK TD+Y+ ++W D + I WPL P +SEKD++ + F
Sbjct: 125 HAEFVYKCTDYYNPYSQQTLSWDDPELGILWPL--DTAPILSEKDKSGSSFKNLKGLF 180
>gi|303257171|ref|ZP_07343185.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderiales bacterium
1_1_47]
gi|331000814|ref|ZP_08324460.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Parasutterella
excrementihominis YIT 11859]
gi|302860662|gb|EFL83739.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderiales bacterium
1_1_47]
gi|329570342|gb|EGG52075.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Parasutterella
excrementihominis YIT 11859]
Length = 185
Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats.
Identities = 76/173 (43%), Positives = 103/173 (59%), Gaps = 2/173 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + ++ + F D RG+F +T+ K +E G+ FVQDN SFS GT+RGLHFQ+
Sbjct: 8 IQGLLEIQPKVFGDKRGFFLETWQKKRYEEAGIHYQFVQDNRSFSSR-GTLRGLHFQKR- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLV I G +FD+AVD+RR S TYG W L +SA Q++IP GFAHGF L
Sbjct: 66 FPQGKLVSVIFGEVFDVAVDLRRGSNTYGNWFGLVLSAEKCNQLWIPPGFAHGFYVLSET 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK TD+Y E ++G+ W DK I + WP+ +SEKD+N +I
Sbjct: 126 AFFEYKCTDYYHPEDEAGILWNDKDIGVDWPIPPASTVLLSEKDRNGLPFKEI 178
>gi|302337208|ref|YP_003802414.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Spirochaeta smaragdinae DSM
11293]
gi|301634393|gb|ADK79820.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Spirochaeta smaragdinae DSM
11293]
Length = 180
Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats.
Identities = 70/174 (40%), Positives = 105/174 (60%), Gaps = 4/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V I+K R F D RG+F +TY + G+ FVQDNHS+S G +RG+HFQ+
Sbjct: 9 KISGVMIVKPRIFPDERGFFMETYKKSDFESAGICADFVQDNHSYSA-FGVLRGIHFQKA 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLV + G ++D+AVD+R +SPT+ WV + +++ G +Y+P G HGF+ L
Sbjct: 68 SHAQGKLVHAVEGSVWDVAVDLRPSSPTFKQWVGITLNSEEGTMLYLPPGCGHGFVVLSH 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+YK T Y+ + D G+ W D + + WP+ P VSEKD LPF +++
Sbjct: 128 TVHFLYKCTTEYAPQADGGIRWNDPDLAVAWPVDH---PQVSEKDAALPFFSEV 178
>gi|167570967|ref|ZP_02363841.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia oklahomensis
C6786]
Length = 183
Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats.
Identities = 68/175 (38%), Positives = 109/175 (62%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F ++++++ E F+QDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPKVFGDARGFFFESFNAREFAEQVDAGVEFIQDNHSRSAK-GVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVDIR++SP +G WV + +SA+N Q+++P GFAHGF+ L
Sbjct: 69 -HAQGKLVRVVGGEVFDVAVDIRKSSPNFGKWVGVVLSADNHRQLWVPPGFAHGFVVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD++ E + +AW D +I I WP+ P ++ KD L +
Sbjct: 128 AAQFLYKTTDYWFPEFERSIAWNDPAIGIDWPI--DFEPLLAAKDAAGKRLGDAE 180
>gi|260174899|ref|ZP_05761311.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D2]
gi|315923142|ref|ZP_07919382.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313697017|gb|EFS33852.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 182
Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats.
Identities = 62/174 (35%), Positives = 101/174 (58%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V +++ R F D RG+F + Y + + F+QDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPRVFSDERGYFMEAYKKEEFEANIGPVNFIQDNESKSS-FGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
++QAKLVR + G + D+AVD+R++SPT+G V + +S N Q +IP GFAHGF L
Sbjct: 66 EHSQAKLVRVLKGEVLDVAVDLRKSSPTFGKHVCVLLSEENKRQFFIPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YKV + Y+ + ++ + + D+++ I WPL ++ + +S KD+
Sbjct: 126 EAVFTYKVDNKYAPQAEASILYNDETLGIDWPLAESQM-LLSAKDREGTAFKDA 178
>gi|317477045|ref|ZP_07936287.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides eggerthii
1_2_48FAA]
gi|316906838|gb|EFV28550.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides eggerthii
1_2_48FAA]
Length = 182
Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats.
Identities = 67/175 (38%), Positives = 107/175 (61%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ + F D+RG+F + + + FVQDN S S G +RGLH+Q+
Sbjct: 7 EIEGVWIIEPKVFNDARGYFMEAFKEGEFRANIGNVHFVQDNESKSS-FGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR I G++ D+AVD+R++SPT+G +VS+E+S N Q +IP GFAHGF+ L
Sbjct: 66 EYSQAKLVRVIKGKVLDVAVDLRQSSPTFGKYVSVELSEENKRQFFIPRGFAHGFLVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YKV + Y+ + ++ + + D+++ I WP+ ++ L +SEKD + +
Sbjct: 126 EAIFTYKVDNGYAPQAEASIRFNDETVGIDWPVAESQL-LLSEKDGHAVSFKDAE 179
>gi|160884576|ref|ZP_02065579.1| hypothetical protein BACOVA_02563 [Bacteroides ovatus ATCC 8483]
gi|293373077|ref|ZP_06619445.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides ovatus SD CMC 3f]
gi|156110315|gb|EDO12060.1| hypothetical protein BACOVA_02563 [Bacteroides ovatus ATCC 8483]
gi|292631963|gb|EFF50573.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides ovatus SD CMC 3f]
Length = 182
Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats.
Identities = 62/174 (35%), Positives = 101/174 (58%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V +++ R F D RG+F + Y + + F+QDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPRVFSDERGYFMEAYKKEEFEANIGPVNFIQDNESKSS-FGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
++QAKLVR + G + D+AVD+R++SPT+G V + +S N Q +IP GFAHGF L
Sbjct: 66 EHSQAKLVRVLKGEVLDVAVDLRKSSPTFGKHVCVLLSEENKRQFFIPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YKV + Y+ + ++ + + D+++ I WPL ++ + +S KD+
Sbjct: 126 EAVFTYKVDNKYAPQAEASILYNDEALGIDWPLAESQM-LLSAKDREGTAFKDA 178
>gi|169836770|ref|ZP_02869958.1| dTDP-4-dehydrorhamnose 3,5-epimerase [candidate division TM7
single-cell isolate TM7a]
Length = 168
Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats.
Identities = 75/154 (48%), Positives = 104/154 (67%), Gaps = 2/154 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ + F D RG+F +TY+ K +ELGL FVQDNHS S G +RGLHFQ
Sbjct: 11 IKDLVIIEPKVFGDERGFFMETYNQKSFEELGLTMNFVQDNHSKS-KKGVLRGLHFQTK- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLV I G ++D+AVD+R+ S T+G W ++++S+ N L YIP GFAHGF+TLE
Sbjct: 69 HTQGKLVCVIKGSVYDVAVDLRKGSKTFGKWYAVKLSSENKLMFYIPEGFAHGFLTLEDE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD 156
TE YK TD Y+ E+DSG+ W D++I+I W +
Sbjct: 129 TEFTYKCTDLYAPEYDSGILWNDETINIDWKFEE 162
>gi|324325334|gb|ADY20594.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 181
Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats.
Identities = 83/178 (46%), Positives = 121/178 (67%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFGDGRGFFTESYNKKVLETLGITYSFVQDNVSYSAEAGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFRQWRGYILSADNHRQLLVPKGFAHGFCTLVS 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS HDSGV W DK + I WP+ P +S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSANHDSGVLWSDKELAIPWPVTS---PILSDKDRILPSLQECEDSF 181
>gi|119503620|ref|ZP_01625703.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [marine gamma
proteobacterium HTCC2080]
gi|119460682|gb|EAW41774.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [marine gamma
proteobacterium HTCC2080]
Length = 183
Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats.
Identities = 71/179 (39%), Positives = 110/179 (61%), Gaps = 3/179 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V ++K + F D RG+F ++++ E G+ FVQDNHS S G +RGLHFQ
Sbjct: 8 LSGVMLIKPKVFGDDRGFFLESWNRCAFAEAGIPSDFVQDNHSRSRQ-GILRGLHFQTQQ 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR I+G ++D+ VD+R NS T+G W +SA N Q+++P+GFAHGF + +
Sbjct: 67 P-QGKLVRVISGSVYDVTVDLRTNSATFGQWFGCLLSAENKTQLWVPSGFAHGFYVVSES 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ +YK TD+Y + + +AW D I+I WPL++ P +S KD + ++I FE+
Sbjct: 126 ADFLYKCTDYYHPQSEVSLAWNDAHINIQWPLVNGENPELSAKDASALSWSEIP-KFEF 183
>gi|388935|gb|AAA63159.1| TDP-deoxyglucose-epimerase [Neisseria meningitidis]
Length = 180
Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats.
Identities = 76/180 (42%), Positives = 104/180 (57%), Gaps = 9/180 (5%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
MNI V+ILK + F+D RG+F +T+ KE FVQ+NHS S G +RG
Sbjct: 1 MNIIDTALPDVKILKPQVFKDGRGFFMETFRDGWFKENIADCSFVQENHSKSGK-GVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHG
Sbjct: 60 LHYQTEN-TQGKLVRVVVGEVFDVAVDMREGSPTFGKWTGATLSAQNQYQLWIPEGFAHG 118
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F L EV+YK TD+Y+ + + + W D ++ I WPL P++S KD L +
Sbjct: 119 FCVLGDAAEVVYKCTDYYNPKAEHSLIWNDPTVGIDWPLQGE--PNLSPKDLAGKVLAEA 176
>gi|282898610|ref|ZP_06306598.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein
[Cylindrospermopsis raciborskii CS-505]
gi|281196478|gb|EFA71387.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein
[Cylindrospermopsis raciborskii CS-505]
Length = 181
Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 110/176 (62%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V +++ + F D RG+F ++++ KL E G+ FVQDNHS S +RGLH+Q
Sbjct: 7 EIPDVLLIEPQVFGDERGFFYESFNEKLFTEKTGISPHFVQDNHSRSGK-NVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR AG +FDIAVD+R++SPT+ WV + +S+ N Q++IP GFAHGF+ L
Sbjct: 66 QQP-QGKLVRVAAGEVFDIAVDLRKSSPTFSQWVGVYLSSANKHQLWIPPGFAHGFLVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD+Y+ E+D G+ W D + I+WP+ + P VS KD++ Q +
Sbjct: 125 EYADFLYKTTDYYAPEYDRGILWNDPDLAISWPIGNE--PIVSSKDKSGKLFFQAE 178
>gi|53804351|ref|YP_113746.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylococcus capsulatus str.
Bath]
gi|53758112|gb|AAU92403.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylococcus capsulatus str.
Bath]
Length = 185
Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats.
Identities = 72/174 (41%), Positives = 102/174 (58%), Gaps = 4/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V ++ + F D+RG+F +T+S + ++ GL FVQDN S+S G +RGLHFQ
Sbjct: 7 DLPGVLLISPKVFGDARGYFKETWSRQRYQDAGLPGDFVQDNLSYS-RKGILRGLHFQN- 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLV+ + G +FD+AVDIR SP +G W +SA N LQ+Y+P GFAHGF L
Sbjct: 65 PRPQGKLVQVLQGEVFDVAVDIRYGSPHFGRWFGTVLSAENHLQMYVPEGFAHGFCVLTE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK T++Y + + W D I I WPL P +S KD++ P L +
Sbjct: 125 AALFAYKCTEYYEPSSEFSLRWDDPDIGIAWPLDSA--PELSAKDRDAPRLRDL 176
>gi|325981019|ref|YP_004293421.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosomonas sp. AL212]
gi|325530538|gb|ADZ25259.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosomonas sp. AL212]
Length = 181
Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats.
Identities = 69/177 (38%), Positives = 107/177 (60%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +++ + F D RG+F ++++ + + +G FVQ NHS S +RGLH+Q
Sbjct: 6 LAIPDVLLIEPKVFGDERGFFYESFNQRSFESVIGRSVQFVQSNHSRSAR-NVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
AQ KL R +AG +FDIAVDIRR+SPT+G WV ++A N Q++IP GFAHGF+ L
Sbjct: 65 IK-QAQGKLARVVAGEVFDIAVDIRRSSPTFGKWVGGILNAENKNQLWIPPGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +Y TD+++ EH+ + W D + I WP++ + P +S+KD + +
Sbjct: 124 SDYAEFLYNTTDYWAPEHERCIVWNDPMLAIDWPIIGS--PVLSDKDACGTTFEKAE 178
>gi|148549129|ref|YP_001269231.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida F1]
gi|148513187|gb|ABQ80047.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida F1]
Length = 181
Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats.
Identities = 72/177 (40%), Positives = 110/177 (62%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + + F D RG+F ++++ K+ +E+ G FVQDNHS S G +RGLH+Q
Sbjct: 6 LAIPDVVLFEPKVFGDQRGFFYESFNQKVFEEVVGRSVTFVQDNHSKSVK-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+AQ KLVR G +FD+AVD+R++SPT+G WV +S+ N Q++IP GFAHGF+ L
Sbjct: 65 IK-HAQGKLVRVTHGEVFDVAVDLRKSSPTFGQWVGAHLSSTNQHQLWIPEGFAHGFVVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+++ + + +AW D ++ I WP D P++S KD L +
Sbjct: 124 SETAEFLYKTTDYWAPKFERSLAWNDPTVAIEWPYTDA--PTLSAKDDIAALLQDAE 178
>gi|296315137|ref|ZP_06865078.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria polysaccharea ATCC
43768]
gi|296837942|gb|EFH21880.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria polysaccharea ATCC
43768]
Length = 185
Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats.
Identities = 81/181 (44%), Positives = 104/181 (57%), Gaps = 9/181 (4%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
MNI V+ILK + F+D RG+F +T+ KE FVQ+NHS S G +RG
Sbjct: 1 MNIIDTALPDVKILKPQVFKDGRGFFMETFRDGWFKENIADRNFVQENHSQS-RKGVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q Q KLVR IAG +FD+AVD+R SPT+G W +SA N Q++IP GFAHG
Sbjct: 60 LHYQTEN-TQGKLVRAIAGEVFDVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHG 118
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F L EV+YK TD+Y E + + W D +I I WPL T P +S KD Q
Sbjct: 119 FYVLSDTAEVMYKCTDYYKPEAEQVLIWNDPAIGIGWPLQTT--PLLSPKDLAGKTWAQA 176
Query: 176 D 176
+
Sbjct: 177 E 177
>gi|317492479|ref|ZP_07950907.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316919471|gb|EFV40802.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 173
Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats.
Identities = 70/178 (39%), Positives = 105/178 (58%), Gaps = 6/178 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQ 59
M + +I++ + F DSRG+F +T+ K +E+ + FVQDNHS S +RGLHFQ
Sbjct: 1 MKLLGTKIIRPKVFGDSRGFFLETFEKKRYQEMLEIDLDFVQDNHSRSSK-NVLRGLHFQ 59
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR + G +FD+AVDIR SPT+G W + ++ N Q +IP G AHGF+ L
Sbjct: 60 TSNP-QGKLVRVVRGEVFDVAVDIRPESPTFGQWEGVLLNEENKTQFWIPPGLAHGFVVL 118
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ YK TD+Y+ +++ + W D + I+WP+ P +SEKD+ L ++ S
Sbjct: 119 SDIADFEYKCTDYYNPANEACLIWNDPDVGISWPVD---CPKLSEKDKLGKTLKELFS 173
>gi|160943814|ref|ZP_02091045.1| hypothetical protein FAEPRAM212_01312 [Faecalibacterium prausnitzii
M21/2]
gi|158444988|gb|EDP21991.1| hypothetical protein FAEPRAM212_01312 [Faecalibacterium prausnitzii
M21/2]
gi|295104041|emb|CBL01585.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Faecalibacterium prausnitzii
SL3/3]
Length = 188
Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats.
Identities = 69/180 (38%), Positives = 96/180 (53%), Gaps = 5/180 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +++ + F D RG+F +TY E G+ FVQDN S S G +RGLHFQ+
Sbjct: 10 EIPGVVVIEPQVFGDDRGYFMETYQKDQFAEAGIDKEFVQDNQSRS-TRGVLRGLHFQK- 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G ++D+AVD R +S T+G WV + +S +N YIP GFAHGF+ L
Sbjct: 68 NHTQGKLVRVTKGEVYDVAVDCRPHSATFGKWVGVTLSEDNKKMFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
E YK TD Y + G+ + D ++++ WP S KD+ FEY
Sbjct: 128 VAEFCYKCTDVYDPTSEGGIPYDDPTVNVQWP-DCGCEHKTSAKDKLHEPFAA--QKFEY 184
>gi|148241181|ref|YP_001226338.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. RCC307]
gi|147849491|emb|CAK26985.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. RCC307]
Length = 193
Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats.
Identities = 74/174 (42%), Positives = 103/174 (59%), Gaps = 3/174 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ ++ R F D RGWF ++++ + + G F QDNHS S G +RGLH+Q P
Sbjct: 14 VEGPLLITPRVFGDERGWFFESWNQRRFDEAAGEAVTFAQDNHSRSAQ-GVLRGLHYQLP 72
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P QAKLVR G IFD+ VD+R++SPT G WV ++SA N Q+++P GFAHGF+TL
Sbjct: 73 PEPQAKLVRVTVGEIFDVVVDLRQSSPTCGQWVGAQLSAENHQQLWVPEGFAHGFLTLSA 132
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
EV YK F++ + + W D ++ I WPL + + VSEKD P L Q
Sbjct: 133 VAEVQYKTRGFWNKGCERAIRWDDPALAIAWPL-EGLTVQVSEKDGLAPSLAQA 185
>gi|78357970|ref|YP_389419.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78220375|gb|ABB39724.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 185
Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats.
Identities = 80/180 (44%), Positives = 112/180 (62%), Gaps = 3/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ ++ R F DSRG+F +++ ++L E GL + FVQDNH+ S G +RGLH Q P
Sbjct: 7 EFPGLTCIRPRVFHDSRGFFLESFRARLFAEQGLPEEFVQDNHACSAQAGVVRGLHMQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLV G +FD+A+D+R SPTYG + +SA N L+++IP GFAHG+MTLE
Sbjct: 67 PAAQGKLVWVTRGSVFDVALDLRTGSPTYGKAYTAVLSAANFLRLFIPRGFAHGYMTLEP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+TE YKV +Y+ + ++G+ W D +DI WP + +S KD LP L SPF Y
Sbjct: 127 HTEFQYKVDAYYAPQAEAGIRWDDPDLDIPWP---DMEAVLSPKDAELPRLCDFASPFVY 183
>gi|152994871|ref|YP_001339706.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Marinomonas sp. MWYL1]
gi|150835795|gb|ABR69771.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Marinomonas sp. MWYL1]
Length = 178
Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats.
Identities = 73/175 (41%), Positives = 106/175 (60%), Gaps = 5/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
NI+ V I++ + F D RG+F +T+ ++ K+ G+ FVQDNHS S +RGLHFQ+
Sbjct: 7 NIDGVVIIEPKVFGDERGFFLETFQAERYKDFAGIDLPFVQDNHSRSGK-NVLRGLHFQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G +FD+ VDIR++S TYG WV +S N Q ++P GFAHGF+ L
Sbjct: 66 T-KPQGKLVRVVRGEVFDVVVDIRKDSLTYGLWVGALLSEENKRQFWVPPGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK TD+Y + + W D ++DI WP + I P +S KDQ+ L ++
Sbjct: 125 DVADFEYKCTDYYDQTDEGCLMWNDPTVDIEWP--EGIEPILSAKDQDGMALGEL 177
>gi|171319432|ref|ZP_02908538.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria MEX-5]
gi|171095361|gb|EDT40340.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria MEX-5]
Length = 183
Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 107/175 (61%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F ++++ K E FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPKVFGDARGFFYESFNGKEFAEQVEPGVEFVQDNHSRSSK-GVLRGLHYQIE 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVDIR+ SP +G WV + +S +N Q+++P GFAHGF+ L
Sbjct: 69 -HAQGKLVRVVEGEVFDVAVDIRKRSPNFGRWVGVILSNDNHRQLWVPPGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD++ +H+ + W D I I WP+ P ++ KD LN+ D
Sbjct: 128 AAQFLYKTTDYWFPKHERSLLWNDPEIGIEWPI--DFEPLLAAKDAAGKRLNEAD 180
>gi|115358135|ref|YP_775273.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria AMMD]
gi|115283423|gb|ABI88939.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria AMMD]
Length = 193
Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats.
Identities = 65/175 (37%), Positives = 100/175 (57%), Gaps = 3/175 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V +++ F D+RG+F +++ L++ G+ FVQDN S S G +RGLH+QR
Sbjct: 9 LPGVLVIEPGVFGDARGFFVESFRESWLRDAGVDATFVQDNQSRS-RRGVLRGLHYQRVN 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV G ++D+AVDIRR SP++G W ++ + ++IP GFAHGF L
Sbjct: 68 P-QGKLVHAARGTVYDVAVDIRRGSPSFGRWFGAQLDDISHRMLWIPPGFAHGFCVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ YK T +Y + D+GV W D +I I WP +S+KD+ P L ++ +
Sbjct: 127 ADFAYKCTQYYDPDSDAGVRWDDPAIGIDWP-ASGAPYQLSDKDRRQPPLAELAA 180
>gi|309378566|emb|CBX22838.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 185
Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats.
Identities = 79/181 (43%), Positives = 102/181 (56%), Gaps = 9/181 (4%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
MNI V+ILK + F D RG+F +T+ KE FVQ+NHS S G +RG
Sbjct: 1 MNIIDTALPDVKILKPQVFTDGRGFFMETFRDGWFKENIADRTFVQENHSQS-RKGVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHG
Sbjct: 60 LHYQTEN-TQGKLVRVVVGEVFDVAVDMREGSPTFGKWTGATLSAQNQYQLWIPEGFAHG 118
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F L EV+YK TD+Y E + + W D +I I WPL T P +S KD Q
Sbjct: 119 FYVLSDTAEVVYKCTDYYKPEAEQVLIWNDPAIGIGWPLQTT--PLLSPKDLAGKTWAQA 176
Query: 176 D 176
+
Sbjct: 177 E 177
>gi|260911475|ref|ZP_05918064.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella sp. oral taxon 472
str. F0295]
gi|260634404|gb|EEX52505.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella sp. oral taxon 472
str. F0295]
Length = 213
Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats.
Identities = 64/175 (36%), Positives = 107/175 (61%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V +++ + F D RG+F + + + ++ + FVQDN S S G +RGLH+Q+
Sbjct: 38 ELQGVFVIEPKVFNDERGYFLEAWKKEEFEKHVGKVDFVQDNESKSS-FGVLRGLHYQKG 96
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+QAKLVR I G++ D+AVD+R++SPT+G +V++E+S N Q++IP GFAHGF+ L
Sbjct: 97 DASQAKLVRVIKGKVLDVAVDLRKSSPTFGKYVAVELSEENKRQLFIPRGFAHGFLVLSP 156
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YKV + Y + ++ + W D+++ I WP+ + S KD N L++ +
Sbjct: 157 EAVFTYKVDNVYCPQSETSIRWNDETLGIQWPI-EYDKIITSPKDLNGKSLSEAE 210
>gi|268593347|ref|ZP_06127568.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Providencia rettgeri DSM
1131]
gi|291311044|gb|EFE51497.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Providencia rettgeri DSM
1131]
Length = 182
Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 98/176 (55%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE--LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
NI V+I++ + F D RG+F + + + +E FVQDN S S G +RGLH+Q
Sbjct: 7 NIPEVKIIEPQVFGDDRGFFLEIWQQEKFEEKITNKPTDFVQDNISKS-RKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLV I G +FD+AVDIR NSPT+G WV + +S N Q+++P GFAHGF
Sbjct: 66 TKN-TQGKLVSVILGEVFDVAVDIRANSPTFGQWVGVYLSDKNKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK T++Y + + W D ++ I WPL T P +SEKD+ NQ
Sbjct: 125 SDEAVFHYKCTNYYDPLSEQTIMWNDSNLSIEWPLC-TEHPVLSEKDKKGILFNQA 179
>gi|167757831|ref|ZP_02429958.1| hypothetical protein CLOSCI_00162 [Clostridium scindens ATCC 35704]
gi|167664485|gb|EDS08615.1| hypothetical protein CLOSCI_00162 [Clostridium scindens ATCC 35704]
Length = 202
Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats.
Identities = 78/184 (42%), Positives = 103/184 (55%), Gaps = 18/184 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + +++ DSRG+F +TY+ + ++E GL FVQDN S S G +RGLHFQ+
Sbjct: 12 GIQGLCVIEPAVHGDSRGYFMETYNQRDMEEAGLTMNFVQDNQSCS-TKGVLRGLHFQKE 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR I G +FD+AVD+R NS TYG W +E++ N Q YIP GFAHGF+ L
Sbjct: 71 -FPQGKLVRAIKGSVFDVAVDLRSNSETYGKWFGIELTEENKKQFYIPEGFAHGFLVLSE 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YK TDFY + G+AW D I I WP L D ++S+K
Sbjct: 130 IAEFCYKCTDFYHPGDEGGLAWNDPEIGIKWPQLVGEYQGSASAEGYHLEDGTALNLSDK 189
Query: 166 DQNL 169
DQ
Sbjct: 190 DQLW 193
>gi|161869099|ref|YP_001598265.1| dTDP-D-glucose 4,6-dehydratase [Neisseria meningitidis 053442]
gi|161594652|gb|ABX72312.1| dTDP-D-glucose 4,6-dehydratase [Neisseria meningitidis 053442]
Length = 179
Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 102/173 (58%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLHYQTEN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L
Sbjct: 67 -TQGKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFCVLGDA 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
EV+YK TD+Y E + + W D ++ I WPL P++S KD L +
Sbjct: 126 AEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPLQGE--PNLSPKDLAGKVLAEA 176
>gi|82701401|ref|YP_410967.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosospira multiformis ATCC
25196]
gi|82409466|gb|ABB73575.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosospira multiformis ATCC
25196]
Length = 183
Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats.
Identities = 73/176 (41%), Positives = 109/176 (61%), Gaps = 3/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I++ + F DSRG+F ++++ + ++ GL FVQDNHS S G +RGLH+Q
Sbjct: 7 SIPEVMIIEPKVFGDSRGFFFESFNQENFRQATGLDVRFVQDNHSRSVK-GVLRGLHYQV 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G +FD+AVDIRR+SPT+G WV +E++ +N Q+++P GFAHGF L
Sbjct: 66 R-RPQGKLVRVVRGAVFDVAVDIRRSSPTFGHWVGVELTEDNYRQLWLPPGFAHGFYVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK T++Y + D + W D I I WP+ + P VS KD+ L +
Sbjct: 125 DIADFLYKTTEYYFSDFDRSILWNDPGIAIGWPIEAGVSPVVSSKDEKAARLVHAE 180
>gi|294341170|emb|CAZ89571.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase) (dTDP-L-rhamnose synthetase) [Thiomonas
sp. 3As]
Length = 187
Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats.
Identities = 74/179 (41%), Positives = 106/179 (59%), Gaps = 7/179 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V IL+ + F D RG+F ++Y+ K + GL FVQDNHS S G +RGLH+Q
Sbjct: 8 LPEVLILEPKVFGDDRGFFFESYNRKTFALDTGLDVEFVQDNHSKSAQ-GVLRGLHYQLV 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G ++D+AVD+RR+SP + WV +E+SA N +++P GF HGF+ L
Sbjct: 67 -KPQGKLVRAVTGTVWDVAVDLRRSSPRFKQWVGVELSAQNQRLLWVPPGFGHGFVVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPFLNQID 176
+ +YK TD++ EHD +AW D + I WPL PS++ KD P L Q +
Sbjct: 126 TADFLYKTTDYWYPEHDRNLAWNDPELAIAWPLKGLHLPGGQPSLAAKDAAAPRLAQAE 184
>gi|320101333|ref|YP_004176925.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfurococcus mucosus DSM
2162]
gi|319753685|gb|ADV65443.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfurococcus mucosus DSM
2162]
Length = 187
Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats.
Identities = 73/181 (40%), Positives = 110/181 (60%), Gaps = 4/181 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I + +++ +D RG+F++ Y + G+ FVQ N S S G +RGLH+Q
Sbjct: 9 LSIPDLMLVEPFVHQDRRGFFTELYKRTVFLSEGIPYSFVQVNMSES-RKGVVRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLV + GRI+D+AVDIR+ SP +G ++ +E+S +N ++IP GFAHGF LE
Sbjct: 68 KPMEQGKLVTVLRGRIYDVAVDIRKGSPWFGRYLGVELSEHNKYLLWIPPGFAHGFQALE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NT V+Y VT YS EH+ ++++D I I WPL +SEKD+ P L + ++ F
Sbjct: 128 DNTVVLYMVTKEYSPEHERCISYRDPDIGIEWPLE---TIFLSEKDEKCPPLKKAETNFN 184
Query: 181 Y 181
Y
Sbjct: 185 Y 185
>gi|237748596|ref|ZP_04579076.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oxalobacter formigenes
OXCC13]
gi|229379958|gb|EEO30049.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oxalobacter formigenes
OXCC13]
Length = 191
Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats.
Identities = 67/173 (38%), Positives = 101/173 (58%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+++ V I++ + F DSRG+F ++Y+ + K+ GL FVQDN S S GTIRG+HFQ+
Sbjct: 7 SLDGVLIIEPKVFADSRGYFFESYNQESFKKAGLDYSFVQDNESKSVH-GTIRGIHFQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
++QAKLVR + G + D+ VD+R S T+G V++E+S N Q+ IP GF HGF L
Sbjct: 66 EFSQAKLVRVLEGNVLDVVVDLRMGSHTFGQHVAVELSGENKRQLLIPRGFGHGFSVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
YK +FY + + + D + I W + + +SEKD+ P Q
Sbjct: 126 TAVFSYKCDNFYMPASEGSILFNDPELAIDWQIPPDDI-LLSEKDKKSPGFQQ 177
>gi|20092576|ref|NP_618651.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanosarcina acetivorans
C2A]
gi|19917852|gb|AAM07131.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanosarcina acetivorans
C2A]
Length = 183
Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats.
Identities = 74/179 (41%), Positives = 107/179 (59%), Gaps = 3/179 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I + IL+ F D RG+F ++Y+ L L G FVQDN S S G IRGLH+Q
Sbjct: 7 EIKDLFILEPDVFGDDRGYFFESYNKMKLDALIGKMYHFVQDNESKSS-YGVIRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P++Q KLVR + G+++D+AVD+R++SPT+G W +E+S N Q IP GFAHGF L
Sbjct: 66 APFSQTKLVRVLQGKVYDVAVDLRKDSPTFGKWFGVELSGENKRQFIIPKGFAHGFSVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+YK ++Y E ++G+A+ D S++I W + D + VS KD LP + + F
Sbjct: 126 ETAVFVYKCDEYYHPETEAGIAYNDPSLNIDWKVRDEDI-KVSPKDGLLPRFEKAEINF 183
>gi|329954898|ref|ZP_08295915.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides clarus YIT 12056]
gi|328527002|gb|EGF54013.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides clarus YIT 12056]
Length = 182
Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats.
Identities = 69/175 (39%), Positives = 108/175 (61%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V I++ R F D+RG+F + + + + FVQDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWIIEPRVFNDARGYFMEAFKEEEFRANIGDVHFVQDNESKSS-FGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR I G++ D+AVD+RR+SPT+G +VS+E+S N Q +IP GFAHGF+ L
Sbjct: 66 EYSQAKLVRVIKGKVLDVAVDLRRSSPTFGKYVSVELSEENKRQFFIPRGFAHGFLVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YKV + Y+ + ++ + + D+++ I WP+ ++ VSEKD + +
Sbjct: 126 EAIFTYKVDNGYAPQAEASIRFNDETVGIDWPVAESQF-IVSEKDGHAVSFKDAE 179
>gi|291525903|emb|CBK91490.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium rectale DSM
17629]
Length = 202
Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats.
Identities = 81/196 (41%), Positives = 114/196 (58%), Gaps = 21/196 (10%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ D+RG+F +TY+S ++E G+ VFVQDN S S G +RGLHFQ+
Sbjct: 12 GIEGLCIIEPTVHGDNRGYFMETYNSNDMQEAGIDRVFVQDNQSCS-TKGVLRGLHFQKE 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y QAKLVR + G +FD+AVD+R +S TYG W +E++ N Q IP GFAHGF+ L
Sbjct: 71 -YPQAKLVRAVKGSVFDVAVDLRSDSKTYGKWFGVELTEENKKQFLIPEGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YKVTDF+ + +SG+AW D +I I WP L D ++S+K
Sbjct: 130 VAEFCYKVTDFWHLGDESGLAWNDPAIGIEWPQLVGEYPGSADGSGYTLEDGTPINLSDK 189
Query: 166 DQNLPFLNQIDSPFEY 181
DQ L ++ F++
Sbjct: 190 DQKWETL---ENTFKF 202
>gi|254673889|emb|CBA09672.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
alpha275]
Length = 180
Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats.
Identities = 76/180 (42%), Positives = 104/180 (57%), Gaps = 9/180 (5%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
MNI V+ILK + F+D RG+F +T+ KE FVQ+NHS S G +RG
Sbjct: 1 MNIIDTALPDVKILKPQVFKDGRGFFMETFRDGWFKENIADCSFVQENHSKSGK-GVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHG
Sbjct: 60 LHYQTEN-TQGKLVRVVVGEVFDVAVDMREGSPTFGKWTGATLSAQNQYQLWIPEGFAHG 118
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F L EV+YK TD+Y+ + + + W D ++ I WPL P++S KD L +
Sbjct: 119 FYVLGDAAEVVYKCTDYYNPKAEHSLIWNDPTVGIDWPLQGE--PNLSPKDLAGKVLAEA 176
>gi|227113156|ref|ZP_03826812.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 178
Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats.
Identities = 69/175 (39%), Positives = 98/175 (56%), Gaps = 6/175 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ +I++ + F D+RG+F +T+ K ++ L + FVQDNHS S G +RGLHFQ+
Sbjct: 7 KIHGAKIIQPKVFGDARGFFLETFEKKRYQQMLNIDVDFVQDNHSRSGK-GVLRGLHFQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLV + G +FD+AVDIR SPTYG W + +S N Q ++P G AHGF L
Sbjct: 66 T-KPQGKLVHVVRGEVFDVAVDIRPGSPTYGVWEGVILSEENKTQFWLPPGLAHGFAVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK TD+Y + + W D I I WP+ P +SEKD+ +
Sbjct: 125 DIADFEYKCTDYYDPSDEGCLLWNDPEIGIEWPISS---PLLSEKDKLGKLFKDL 176
>gi|229056954|ref|ZP_04196349.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH603]
gi|228720343|gb|EEL71917.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH603]
Length = 181
Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats.
Identities = 82/178 (46%), Positives = 124/178 (69%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R FED RG+F+++Y+ K+L+ LG+ FVQDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFEDERGFFTESYNKKMLESLGITHSFVQDNVSYSAHSGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF T+
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFKKWRGYILSADNHRQLLVPKGFAHGFCTMVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS +HDSG+ W+DK + I WP+ + P +S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSADHDSGLLWEDKELSIPWPVTN---PILSDKDRILPLLQEYEDSF 181
>gi|78186305|ref|YP_374348.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Chlorobium luteolum
DSM 273]
gi|78166207|gb|ABB23305.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium luteolum DSM 273]
Length = 194
Score = 250 bits (640), Expect = 6e-65, Method: Composition-based stats.
Identities = 73/182 (40%), Positives = 106/182 (58%), Gaps = 3/182 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V L+ D RG+F +++ +++E + FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IPDVLELEPEVLGDQRGYFLESFRQDVIEESVGRVSFVQDNESKS-RRGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q+KLVR ++GR+ D+A+DIR SP YG V+ E+ +++P GFAHGF+ L
Sbjct: 67 YTQSKLVRVVSGRVLDVALDIRIGSPWYGRHVACELDGERKNMLWVPKGFAHGFVVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK ++Y H+ G+ W D ++ I W L D L VS +D +LP L+ DS F Y+
Sbjct: 127 AVFAYKCDNYYMPSHEGGIHWNDPALGIDWKL-DPSLILVSARDSSLPGLSSADS-FRYE 184
Query: 183 GL 184
Sbjct: 185 EF 186
>gi|84622379|ref|YP_449751.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|188578646|ref|YP_001915575.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|84366319|dbj|BAE67477.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|188523098|gb|ACD61043.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 185
Score = 250 bits (640), Expect = 6e-65, Method: Composition-based stats.
Identities = 70/187 (37%), Positives = 103/187 (55%), Gaps = 9/187 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ F D RG+F +T++++ + GL F+Q N S S G +RGLH+Q P
Sbjct: 8 LPGCVVIEPAVFGDERGYFFETWNAERFGQHGLPTQFLQSNVSTSAK-GVLRGLHYQW-P 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV + G ++D+AVD+R SP +G W ++ +SA N Q +IP GFAHGF L
Sbjct: 66 RPQGKLVSVLEGEVYDVAVDVRHGSPNFGQWAAVVLSAENKKQFWIPEGFAHGFAVLSER 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
Y TD Y E D+GV W D +I I WP+ + P +S KD PFL + + +
Sbjct: 126 AVFSYLCTDVYVKEADAGVRWDDAAIGIDWPISN---PLLSAKDAAAPFLADVPA----E 178
Query: 183 GLPLLSL 189
LP+
Sbjct: 179 RLPVYKP 185
>gi|116749695|ref|YP_846382.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Syntrophobacter fumaroxidans
MPOB]
gi|116698759|gb|ABK17947.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Syntrophobacter fumaroxidans
MPOB]
Length = 184
Score = 250 bits (640), Expect = 6e-65, Method: Composition-based stats.
Identities = 82/195 (42%), Positives = 115/195 (58%), Gaps = 18/195 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ + +L+ R F DSRG+F ++Y+ L++ G+ FVQDNHS S G +RGLH+Q
Sbjct: 8 DLPGLLVLEPRVFGDSRGFFFESYNQNTLRQWGIVLPFVQDNHSGS-RKGVLRGLHYQVG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KL+R +AG +FD+AVD+R SP +G W + +SA QIYIP GFAHGF+T+
Sbjct: 67 -HAQGKLIRVVAGEVFDVAVDLRTKSPAFGRWFGMILSAAERKQIYIPPGFAHGFLTVSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
EV+YK TDFY+ E + + W D I I WPL P++S KD
Sbjct: 126 WAEVLYKTTDFYAPECERCIIWNDPDIGIDWPLECP--PTLSSKDS-------------- 169
Query: 182 DGLPLLSLNMERDLL 196
+GLPL + DL
Sbjct: 170 EGLPLSKADRYEDLF 184
>gi|261391607|emb|CAX49045.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase; dTDP-L-rhamnose synthetase) [Neisseria
meningitidis 8013]
Length = 185
Score = 250 bits (640), Expect = 6e-65, Method: Composition-based stats.
Identities = 76/181 (41%), Positives = 104/181 (57%), Gaps = 9/181 (4%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
MNI V+ILK + F+D RG+F +T+ KE FVQ+NHS S G +RG
Sbjct: 1 MNIIDTALPDVKILKPQVFKDGRGFFMETFRDGWFKENIADCSFVQENHSKSGK-GVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHG
Sbjct: 60 LHYQTEN-TQGKLVRVVVGEVFDVAVDMREGSPTFGKWTGATLSAQNQYQLWIPEGFAHG 118
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F L EV+YK TD+Y+ + + + W D ++ I WPL P++S KD Q
Sbjct: 119 FYVLGDAAEVVYKCTDYYNPKAEHSLIWNDPTVGIDWPLQGE--PNLSPKDLAGKAWAQA 176
Query: 176 D 176
+
Sbjct: 177 E 177
>gi|88813324|ref|ZP_01128562.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Nitrococcus mobilis Nb-231]
gi|88789382|gb|EAR20511.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Nitrococcus mobilis Nb-231]
Length = 182
Score = 250 bits (640), Expect = 6e-65, Method: Composition-based stats.
Identities = 70/174 (40%), Positives = 108/174 (62%), Gaps = 2/174 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V ++K + D+RG+F +T+ + ++ GL FVQDNHS S G +RGLH+Q
Sbjct: 8 LPDVILIKPQVAGDARGYFMETWHERKFQDAGLDVRFVQDNHSRS-RHGILRGLHYQIRQ 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR ++G +FD+AVD+RR+SP++G WV +E+S N ++IP GFAHGF +
Sbjct: 67 P-QGKLVRVVSGAVFDVAVDLRRSSPSFGQWVGVELSEENKHMLWIPPGFAHGFYVSAEH 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TDF++ +H+ + W D +DI WP+ P +SEKD+ + +
Sbjct: 126 AEFVYKCTDFWAPQHERTIRWDDSELDIAWPIPTHAAPLLSEKDRAGVAFSDAE 179
>gi|281418043|ref|ZP_06249063.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum
JW20]
gi|281409445|gb|EFB39703.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum
JW20]
Length = 183
Score = 250 bits (640), Expect = 6e-65, Method: Composition-based stats.
Identities = 75/174 (43%), Positives = 113/174 (64%), Gaps = 3/174 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + +++ + F D+RG+F ++Y+ K E GL FVQDNH S G +RG+HFQR
Sbjct: 11 IEGLVVVEPKIFTDTRGFFFESYNKKAFCEFGLTMEFVQDNHIKS-RIGVLRGIHFQRK- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q +LVR I G+++D+AVD+R+NSPT+G W +E+SA N YIP F H F+TLE +
Sbjct: 69 FPQGRLVRVIKGKVYDVAVDLRKNSPTFGKWYGIELSAENKKMFYIPENFGHAFLTLEDD 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
TEV+ K T+ Y E +SG+ + D ++I WP ++ + +SEKD+NLP +
Sbjct: 129 TEVLCKTTNVYRPEFESGIIYNDPELNIDWPQIEGDI-VLSEKDKNLPTFKNAE 181
>gi|261391624|emb|CAX49066.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase; dTDP-L-rhamnose synthetase) [Neisseria
meningitidis 8013]
Length = 179
Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats.
Identities = 76/180 (42%), Positives = 104/180 (57%), Gaps = 9/180 (5%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
MNI V+ILK + F+D RG+F +T+ KE FVQ+NHS S G +RG
Sbjct: 1 MNIIDTALPDVKILKPQVFKDGRGFFMETFRDGWFKENIADCSFVQENHSKSGK-GVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHG
Sbjct: 60 LHYQTEN-TQGKLVRVVVGEVFDVAVDMREGSPTFGKWTGATLSAQNQYQLWIPEGFAHG 118
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F L EV+YK TD+Y+ + + + W D ++ I WPL P++S KD L +
Sbjct: 119 FYVLGDAAEVVYKCTDYYNPKAEHSLIWNDPTVGIDWPLQGE--PNLSPKDLAGKVLAEA 176
>gi|240140508|ref|YP_002964988.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
AM1]
gi|240010485|gb|ACS41711.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
AM1]
Length = 183
Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats.
Identities = 83/178 (46%), Positives = 111/178 (62%), Gaps = 1/178 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+ + ++ D RGWFS+ Y + +L E G+ + FVQDN SFS GTIRGLHFQ
Sbjct: 7 EIPAVKRVIPKRHGDDRGWFSEVYRADILSEHGIANAFVQDNQSFSAPAGTIRGLHFQVA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKL+R +AG I D+AVD+R +SPTYG V++ + A G Q+++P GFAHGF TLE
Sbjct: 67 PNAQAKLIRVLAGAILDVAVDLRSDSPTYGRHVAVRLDATGGEQLFVPAGFAHGFCTLEP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
T V YKV +YS D + W D +I I WP+ + +S KD+ P L + F
Sbjct: 127 ETMVAYKVDAYYSPADDRNLRWNDPAIGIEWPVAEAG-AILSGKDKAAPLLADLGRVF 183
>gi|237713247|ref|ZP_04543728.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D1]
gi|262406613|ref|ZP_06083162.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_22]
gi|294646163|ref|ZP_06723819.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides ovatus SD CC 2a]
gi|294807867|ref|ZP_06766649.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides xylanisolvens SD
CC 1b]
gi|299145719|ref|ZP_07038787.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_1_23]
gi|229446714|gb|EEO52505.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D1]
gi|262355316|gb|EEZ04407.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_22]
gi|292638492|gb|EFF56854.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides ovatus SD CC 2a]
gi|294444929|gb|EFG13614.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides xylanisolvens SD
CC 1b]
gi|298516210|gb|EFI40091.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_1_23]
Length = 182
Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats.
Identities = 65/179 (36%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V +++ + F D RG+F + Y + F+QDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPKVFSDERGYFMEAYKKEEFDANIGPVDFIQDNESKSS-FGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR + G++ D+AVD+R++SPT+G V + +S N Q +IP GFAHGF L
Sbjct: 66 EYSQAKLVRVLKGKVLDVAVDLRKSSPTFGKHVCVLLSEENKRQFFIPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
YKV + Y+ + ++ + + D+++ I WPL D+ + +S KD+ + FE
Sbjct: 126 EAVFTYKVDNKYAPQAEASILYNDETLGIDWPLADSQM-VLSAKDREGTAFKDA-AYFE 182
>gi|127514631|ref|YP_001095828.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella loihica PV-4]
gi|126639926|gb|ABO25569.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella loihica PV-4]
Length = 182
Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats.
Identities = 69/175 (39%), Positives = 103/175 (58%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V++L+ + F D RG F +T+ + KE + FVQ+N S S GT+RGLH+Q
Sbjct: 7 SIPDVKLLEPQVFGDERGCFFETFRQQWFKEHLMDLDFVQENQSHSLQ-GTLRGLHYQLR 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KL+R ++G IFD+ VD+RR SP++G W +SA+N Q+++P GFAHGF +
Sbjct: 66 QP-QGKLIRVVSGEIFDVCVDLRRTSPSFGQWTGHHLSADNKHQLWVPPGFAHGFYVVSP 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YK TD+Y+ + + W D ++ I WPLL T P +S KD+ + D
Sbjct: 125 EAHCFYKCTDYYAPNDEHSIRWDDDTLAIDWPLLSTQSPLLSPKDKAAGTFAEAD 179
>gi|304314129|ref|YP_003849276.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanothermobacter
marburgensis str. Marburg]
gi|302587588|gb|ADL57963.1| predicted dTDP-4-dehydrorhamnose 3,5-epimerase [Methanothermobacter
marburgensis str. Marburg]
Length = 185
Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats.
Identities = 74/172 (43%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ I++ + D RG+F +T++ L ++ GL FVQDN S S G +RGLHFQ
Sbjct: 11 LDGAIIIEPEVYGDERGYFMETFNQALFRDHGLDITFVQDNESMS-RRGVLRGLHFQLK- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KL+R + G IFD+AVD+RR+S TYG WV + +S N + +IP GFAHGF+ L
Sbjct: 69 RPQGKLIRAVKGEIFDVAVDLRRDSETYGEWVGVHLSEENRREFFIPEGFAHGFLALADE 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
V YK T+ Y E+DSG+ W D I I WPL +S+KD N L +
Sbjct: 129 CIVNYKCTELYLPEYDSGIPWDDPDIGIEWPLELVDELIISDKDMNWKPLRE 180
>gi|88860050|ref|ZP_01134689.1| dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase [Pseudoalteromonas
tunicata D2]
gi|88818044|gb|EAR27860.1| dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase [Pseudoalteromonas
tunicata D2]
Length = 181
Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats.
Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 2/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+I+ + F D RG+F +T+ K FVQ+NHS S G +RGLH+Q
Sbjct: 8 IADVKIIVPKIFGDERGYFMETFRDDWFKREVADVDFVQENHS-SSKQGILRGLHYQTE- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KL+R G IFD+ VD+RR S T+G W ++A N Q+++P GFAHGF + +
Sbjct: 66 HAQGKLIRVTQGEIFDVVVDLRRQSSTFGQWFGCYLNAENKHQLWVPAGFAHGFYVVSQS 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
E+IYK TD+Y+ H+ + W D + I WPLL LP++S KD
Sbjct: 126 AEIIYKCTDYYAPAHEHSICWNDTDLAIDWPLLKGTLPTLSLKDSAATPFK 176
>gi|253572901|ref|ZP_04850299.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 1_1_6]
gi|251837533|gb|EES65626.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 1_1_6]
Length = 190
Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats.
Identities = 70/179 (39%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ + ++D RG+F +++++ E G+ FVQDN S S G +RGLH+Q+
Sbjct: 8 IESVLIIEPKVYQDERGYFFESFNANEFSEKTGMDIHFVQDNESMSS-YGVMRGLHYQKM 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY Q+KLVRC+ G + D+AVDIR SPT+G V++E++ N Q ++P GFAHGF L
Sbjct: 67 PYTQSKLVRCVKGAVLDVAVDIRYGSPTFGQHVAVELTEENHRQFFVPRGFAHGFAVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
YK +FY E D+G+ +D+S+ I W + +SEKD L F+
Sbjct: 127 TALFQYKCDNFYHPEADAGINIKDESLGIDWKVPVE-HAILSEKDLKHACLKDASYDFD 184
>gi|89094080|ref|ZP_01167023.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Oceanospirillum sp. MED92]
gi|89081555|gb|EAR60784.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Oceanospirillum sp. MED92]
Length = 178
Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats.
Identities = 73/174 (41%), Positives = 104/174 (59%), Gaps = 6/174 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I ++I++ R F D RG+F +T+ K E G+ FVQDNHS S G +RGLHFQR
Sbjct: 8 IADLKIIEPRVFGDERGFFLETFQEKRYATEAGISLPFVQDNHSRSSK-GVLRGLHFQRT 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR ++G +FD+AVD+R S TYG W +E+SA N Q ++P GFAHGF+ L
Sbjct: 67 -KPQGKLVRVVSGSVFDVAVDLRAGSNTYGNWFGVELSAENKKQFWVPPGFAHGFIVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK TD+Y ++ + W D + + WP + P +SEKD+ L ++
Sbjct: 126 RADFEYKCTDYYDPSDEACLKWNDPEVGVVWP---DLEPLLSEKDKQGLPLGEL 176
>gi|282877916|ref|ZP_06286725.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella buccalis ATCC
35310]
gi|281299917|gb|EFA92277.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella buccalis ATCC
35310]
Length = 182
Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats.
Identities = 72/175 (41%), Positives = 110/175 (62%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ + FED+RG+F + + ++ Q F+QDN S S G +RGLH+Q+
Sbjct: 7 KIKGVWIIEPKVFEDARGYFFEAWKQADFQKQIGQVDFIQDNESKSS-FGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR I GR+ D+AVD+R++SPT+ +VS+E+S +N Q++IP GFAHGF+ L
Sbjct: 66 EYSQAKLVRVIKGRVLDVAVDLRKSSPTFSQYVSVELSEDNKRQLFIPRGFAHGFLVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YKV + Y+ ++G+ W D++I+I+WP+ D SEKD L +
Sbjct: 126 EAIFTYKVDNPYAPAQEAGIRWDDETINISWPI-DKDKIVTSEKDLKACSLADAE 179
>gi|251771903|gb|EES52477.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospirillum
ferrodiazotrophum]
Length = 184
Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats.
Identities = 69/173 (39%), Positives = 103/173 (59%), Gaps = 5/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V +L + DSRG+F +++ +K LGL +FVQDNHS S G RGLH+Q+
Sbjct: 8 LPGVLLLVPKVHGDSRGFFLESFHAKTFSRLGLPQLFVQDNHSRSVR-GVTRGLHYQKR- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR + G +FD+AVD+R +SPT+ W +S N +YIP GFAHGF +
Sbjct: 66 HGQGKLVRVVRGSVFDVAVDLRPDSPTFSRWFGTTLSEENHAMLYIPEGFAHGFQVTSES 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ +YK TDFY + + G+ W D + + WP+ + +S+KD LP L+ +
Sbjct: 126 ADFLYKCTDFYDPQDEGGILWNDPEVGVVWPIAEAA---LSKKDAALPLLSAV 175
>gi|190572701|ref|YP_001970546.1| putative DTDP-dehydrorhamnose 3,5-epimerase [Stenotrophomonas
maltophilia K279a]
gi|190010623|emb|CAQ44232.1| putative DTDP-dehydrorhamnose 3,5-epimerase [Stenotrophomonas
maltophilia K279a]
Length = 185
Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats.
Identities = 73/174 (41%), Positives = 103/174 (59%), Gaps = 5/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ +++ F D+RG+F +T++++ LGL D FVQ N S S G +RGLH+Q
Sbjct: 7 KLPGCVVIEPAVFGDARGYFFETWNAERFAALGLPDRFVQSNVSTSAK-GVLRGLHYQW- 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLV + G ++D+AVDIRR SPT+G W ++ +SA N Q +IP GFAHGF L
Sbjct: 65 PRPQGKLVSVLEGEVYDVAVDIRRGSPTFGQWEAVVLSAENKKQFWIPEGFAHGFAVLSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y T+ Y + D+GV W D I + WP+ P++S KD+N PFL I
Sbjct: 125 RAVFSYLCTEVYLKDFDAGVRWNDADIAVDWPIS---APTLSAKDENAPFLKDI 175
>gi|218708291|ref|YP_002415912.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio splendidus LGP32]
gi|218321310|emb|CAV17260.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio splendidus LGP32]
Length = 182
Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 105/173 (60%), Gaps = 2/173 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V+I++ F D RG+F +T+ + + FVQDNHS S G +RGLHFQ+
Sbjct: 8 ISDVKIVEVSVFGDERGFFMETFRADEFMKQTGAKPFVQDNHSKS-TKGILRGLHFQQG- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR +G ++D+AVD+R++SPT+G V +E+SA N Q+++P GFAHGF + +
Sbjct: 66 QTQGKLVRVTSGAVYDVAVDMRQSSPTFGKAVGVELSAENKRQLWVPEGFAHGFYVITDS 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y E + V W D + I WPL+D LP +S KD +
Sbjct: 126 AEFVYKCTDYYHPESEVSVRWDDVELAIEWPLVDGELPQLSAKDADAFSFKDA 178
>gi|229010610|ref|ZP_04167811.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus mycoides DSM 2048]
gi|229132118|ref|ZP_04260977.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus BDRD-ST196]
gi|229166160|ref|ZP_04293920.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH621]
gi|228617258|gb|EEK74323.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH621]
gi|228651338|gb|EEL07314.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus BDRD-ST196]
gi|228750654|gb|EEM00479.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus mycoides DSM 2048]
Length = 181
Score = 250 bits (639), Expect = 8e-65, Method: Composition-based stats.
Identities = 82/178 (46%), Positives = 124/178 (69%), Gaps = 3/178 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N ++L+ R FED RG+F+++Y+ K+L+ LG+ F+QDN S+S GTIRGLHFQ+
Sbjct: 7 NFTDAKLLEPRLFEDERGFFTESYNKKMLESLGITHSFLQDNVSYSAHSGTIRGLHFQKN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL++ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL
Sbjct: 67 PKAQTKLIQVMQGAIYDVIVDLRKDSPTFKKWRGYILSADNHRQLLVPKGFAHGFCTLVP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V+YKV ++YS +HDSG+ W+DK + I WP+ + P +S+KD+ LP L + + F
Sbjct: 127 HTIVMYKVDEYYSADHDSGLLWEDKELSIPWPVTN---PILSDKDRILPLLQEYEDSF 181
>gi|170702909|ref|ZP_02893751.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria
IOP40-10]
gi|170132189|gb|EDT00675.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria
IOP40-10]
Length = 193
Score = 250 bits (639), Expect = 8e-65, Method: Composition-based stats.
Identities = 64/175 (36%), Positives = 100/175 (57%), Gaps = 3/175 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V +++ F D+RG+F +++ L++ G+ FVQDN S S G +RGLH+QR
Sbjct: 9 LPGVLVIEPGVFGDARGFFVESFRESWLRDAGVDATFVQDNQSRS-RRGVLRGLHYQRVN 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV G ++D+AVDIRR SP++G W ++ + +++P GFAHGF L
Sbjct: 68 P-QGKLVHAARGTVYDVAVDIRRGSPSFGRWFGAQLDDISHRMLWVPPGFAHGFCVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ YK T +Y + D+GV W D +I I WP +S+KD+ P L ++ +
Sbjct: 127 ADFAYKCTQYYDPDSDAGVRWDDPAIGIDWP-ASGAPYQLSDKDRRQPPLAELAA 180
>gi|149175092|ref|ZP_01853715.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Planctomyces maris DSM
8797]
gi|148846070|gb|EDL60410.1| dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase [Planctomyces maris DSM
8797]
Length = 182
Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats.
Identities = 75/181 (41%), Positives = 110/181 (60%), Gaps = 9/181 (4%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M+I + I+ R F D RG+F +T+ + ++ G+ FVQDNHS S G +RG
Sbjct: 1 MDIQQTEFPGLVIITPRVFSDDRGFFKETFQQERYEQAGIPGPFVQDNHSRSS-AGILRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LHFQ QAKLV + G I D+ VD+R+NSPT+G +S+ +SA N Q+++P GFAHG
Sbjct: 60 LHFQIH-RPQAKLVFAVEGEILDVCVDLRKNSPTFGKSISVLLSAENHKQLFVPAGFAHG 118
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F L + +YK TD+Y EH+ + W D +++I WPL D P +SEKD+ L++
Sbjct: 119 FYVLSPRADFMYKCTDYYFPEHERTLLWNDPALEIEWPLSDE--PILSEKDRKGLPLSEC 176
Query: 176 D 176
+
Sbjct: 177 E 177
>gi|159042035|ref|YP_001541287.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caldivirga maquilingensis
IC-167]
gi|157920870|gb|ABW02297.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caldivirga maquilingensis
IC-167]
Length = 188
Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats.
Identities = 66/181 (36%), Positives = 103/181 (56%), Gaps = 3/181 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +++ ++F D RG+F++ + G+ F Q + S S G +RGLH+Q
Sbjct: 9 LEIPDVILIEYQRFPDHRGFFAELWKRTDFLANGVFYDFTQLSTSVS-RRGVVRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLV + GR+ D+AVD+R+ SP +G V++E+S N +++P GFAHGF LE
Sbjct: 68 KPMEQGKLVTVLRGRVIDVAVDVRKGSPWFGKHVAVELSTNEPRLLWVPPGFAHGFQALE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T +Y +T YS +H+ V W D + I WP+ + +SEKD P L ++ F
Sbjct: 128 DDTVFLYLMTKEYSPQHERCVKWDDPELGIEWPIRSNV--IISEKDSKCPPLKAAETNFN 185
Query: 181 Y 181
Y
Sbjct: 186 Y 186
>gi|28377962|ref|NP_784854.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus plantarum
WCFS1]
gi|28270796|emb|CAD63701.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus plantarum
WCFS1]
Length = 182
Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats.
Identities = 73/174 (41%), Positives = 105/174 (60%), Gaps = 1/174 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ F D RG+F++TYS + KE G+ F+QDN S S + G +RGLHFQR
Sbjct: 10 KLQDVKIIEPAVFGDKRGFFTETYSDRDFKEAGIDFDFIQDNQSLSAEAGVLRGLHFQRG 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G + D+ VD+R SPTYG W IS +N Q+ +P GFAHGF+TL
Sbjct: 70 KAAQTKLIRVVTGAVLDVIVDVRAGSPTYGEWEGYIISESNHRQLLVPRGFAHGFVTLTD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
N +YK ++Y+ E D G+ + DK ++I WP+ D S+KD +I
Sbjct: 130 NVNFLYKCDNYYNAEADGGITFMDKDLNINWPI-DYDQAITSDKDAKQQTFQRI 182
>gi|323697532|ref|ZP_08109444.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio sp. ND132]
gi|323457464|gb|EGB13329.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio desulfuricans
ND132]
Length = 189
Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats.
Identities = 76/183 (41%), Positives = 112/183 (61%), Gaps = 1/183 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ +L + F+D RG+F ++Y++ +ELG+ F+QDNH++S D G +RG HFQRP
Sbjct: 7 EFPGLLVLVPQVFQDERGFFLESYNANHFRELGITCTFIQDNHAYSRDVGVLRGFHFQRP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKLV G + D+ VD+R SPTYG W + +SA N +++IP GF H ++T+
Sbjct: 67 PQAQAKLVWVTRGAVLDVVVDLRIGSPTYGRWQHVILSAANFKRMFIPRGFGHAYVTIMP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP-LLDTILPSVSEKDQNLPFLNQIDSPFE 180
+TE YKV Y+ + G+AW D I + W L P +SEKD+ L L +SPF
Sbjct: 127 DTEFQYKVDAPYAPALEGGLAWDDPDIGMDWDAALHGQEPILSEKDRRLSGLAGFESPFT 186
Query: 181 YDG 183
++G
Sbjct: 187 FEG 189
>gi|281423225|ref|ZP_06254138.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella oris F0302]
gi|281402561|gb|EFB33392.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella oris F0302]
Length = 182
Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 106/175 (60%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ F D+RG+F + + ++ + + F+QDN S S G +RGLH+Q+
Sbjct: 7 EIKGVYIIEPHVFNDARGYFFEAWKNEEFQRNVGKINFIQDNESKSS-YGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR I G++ D+AVDIR++SPT+G +V +E+S N Q +IP GFAHGF+ L
Sbjct: 66 EYSQAKLVRVIKGKVLDVAVDIRKSSPTFGKYVMVELSDENKRQFFIPRGFAHGFLVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YKV + Y+ +H++ + W D+ I I WP+ +T SEKD L +
Sbjct: 126 EAIFTYKVDNVYAPQHEASIRWNDEDIHIEWPI-ETKDVLTSEKDLKASSLKDAE 179
>gi|325920446|ref|ZP_08182374.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas gardneri ATCC
19865]
gi|325549093|gb|EGD20019.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas gardneri ATCC
19865]
Length = 185
Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats.
Identities = 71/173 (41%), Positives = 101/173 (58%), Gaps = 5/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ F D RG+F +T++++ + GL FVQ N S S G +RGLH+Q P
Sbjct: 8 LPGCVVIEPAVFGDERGYFFETWNAERFGQHGLPTNFVQSNVSTSAR-GVLRGLHYQW-P 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV + G ++D+AVDIR SP +G W ++ +SA N Q++IP GFAHGF L
Sbjct: 66 RPQGKLVSVLEGEVYDVAVDIRSGSPHFGHWTAVLLSAENRRQVWIPEGFAHGFAVLSEK 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y TD Y E D+GV W D I I WP+ D P +S KD + PFL+++
Sbjct: 126 ALFSYLCTDVYVREADAGVRWNDAEIGIDWPISD---PLLSAKDASAPFLSEV 175
>gi|262275864|ref|ZP_06053673.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Grimontia hollisae CIP
101886]
gi|262219672|gb|EEY70988.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Grimontia hollisae CIP
101886]
Length = 182
Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats.
Identities = 71/177 (40%), Positives = 108/177 (61%), Gaps = 4/177 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI V++++ F D RG+F +TY + L + + VFVQ+NHS S G +RGLH+Q
Sbjct: 7 NIPDVKLIEPTVFGDERGFFMETYRTALFNDHCGERVFVQENHSKS-KKGILRGLHYQTE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR ++G +FD+A+D+R+ SP +G WV +SA N Q+++P GFAHGF
Sbjct: 66 N-TQGKLVRVVSGEVFDVAIDMRKRSPYFGQWVGAYLSAENKRQLWVPEGFAHGFYVTSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
E +YK TD+Y+ + + + W D ++ I WP+ D PS+S KD+ + D+P
Sbjct: 125 EAEFVYKCTDYYNPDVEVSIKWNDAALGIDWPIADAGPPSLSAKDEAG--FSFFDAP 179
>gi|163859123|ref|YP_001633421.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bordetella petrii DSM 12804]
gi|163262851|emb|CAP45154.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bordetella petrii]
Length = 181
Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats.
Identities = 76/179 (42%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I V +++ D+RG+F ++Y++ L LG +FVQDN S S +RGLH+Q
Sbjct: 6 LSIPDVLLIEPEVHADARGYFFESYNAARLQAALGRAPMFVQDNQSRSLR-HVVRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
QAKLVR +AG +FD+AVD+RR SPT+G W +SA N Q+++P GFAHGFM L
Sbjct: 65 IRQP-QAKLVRVVAGEVFDVAVDLRRASPTFGQWAGAVLSAENKCQLWVPEGFAHGFMAL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
E +YK +D+Y+ H+ V W D I I WP D + VSEKD+ L D+
Sbjct: 124 SDVAETLYKASDYYAPAHERCVRWDDPDIGIAWPARDDV--IVSEKDRRGVALRDADTY 180
>gi|257456603|ref|ZP_05621798.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Treponema vincentii ATCC
35580]
gi|257446023|gb|EEV21071.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Treponema vincentii ATCC
35580]
Length = 178
Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats.
Identities = 73/170 (42%), Positives = 100/170 (58%), Gaps = 3/170 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + ++ + F D+RG+F +++S + G+ FVQDN S S G +RGLHFQ+
Sbjct: 10 IAGLYEIQPKVFSDNRGYFFESWSQRDFAAAGITYTFVQDNQSKSSK-GVLRGLHFQKE- 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+Q KLVR ++G +FD+AVDIRR S T+G W + +SA Q +I GFAHGF+ L
Sbjct: 68 YSQGKLVRVLSGEVFDVAVDIRRGSATHGKWYGVVLSAERKNQFFISPGFAHGFLVLSDE 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
YK TDFY E + G+ W D +I I WP LD + SEKD P
Sbjct: 128 AVFAYKCTDFYHPEDEGGIMWNDPAIGIEWPKLD-VPYIFSEKDTKYPAF 176
>gi|323340991|ref|ZP_08081240.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Lactobacillus
ruminis ATCC 25644]
gi|323091653|gb|EFZ34276.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Lactobacillus
ruminis ATCC 25644]
Length = 202
Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats.
Identities = 73/189 (38%), Positives = 98/189 (51%), Gaps = 18/189 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ D RG+F +TY+ +KE G+ FVQDN S S G +RGLHFQ+
Sbjct: 12 GIEGLCVITPAVHGDDRGYFMETYNENDMKEAGIDVKFVQDNQSMS-TKGVLRGLHFQKH 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD VD+R++S TYG W + +SA N Q IP GFAHGF+ L
Sbjct: 71 -FPQCKLVRAVRGTVFDAVVDLRQDSKTYGKWYGVTLSAENKKQFLIPEGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YKV DF+ + G+AW D I I WP L D ++S+K
Sbjct: 130 EAEFCYKVNDFWHPNDEGGMAWNDPEIGIEWPELVGEYKGTPSAEGYTLEDGTKITLSDK 189
Query: 166 DQNLPFLNQ 174
DQ
Sbjct: 190 DQKWLGFKD 198
>gi|281419878|ref|ZP_06250877.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella copri DSM 18205]
gi|281406005|gb|EFB36685.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella copri DSM 18205]
Length = 184
Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats.
Identities = 70/177 (39%), Positives = 105/177 (59%), Gaps = 4/177 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V +++ R FED+RG+F + + G VFVQDN S S G +RGLH+Q+
Sbjct: 7 EIEGVWLIEPRVFEDARGYFFEAWKQADFDAHVGGHVVFVQDNESMSAR-GVLRGLHYQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
++QAKLVR I GR+ D+AVD+R+ S T+G +V +E+S N Q +IP GFAHGF+ L
Sbjct: 66 GEFSQAKLVRVIKGRVLDVAVDLRKGSKTFGKYVMVELSGENKRQFFIPRGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ-NLPFLNQID 176
YKV + Y+ ++++ + W D +I I WP+ + + SEKD+ + D
Sbjct: 126 DEAIFTYKVDNVYAPDYEASIHWDDPTIGIKWPI-EGVEVLTSEKDRTKAKSFEEAD 181
>gi|160888244|ref|ZP_02069247.1| hypothetical protein BACUNI_00653 [Bacteroides uniformis ATCC 8492]
gi|156862190|gb|EDO55621.1| hypothetical protein BACUNI_00653 [Bacteroides uniformis ATCC 8492]
Length = 182
Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats.
Identities = 64/174 (36%), Positives = 105/174 (60%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V +++ + F D+RG+F + + + + F+QDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPKVFHDARGYFMEAFKEEEFRAHVGNVHFIQDNESKSS-FGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+QAKLVR I G++ D+AVD+R++SPT+G +VS+E+S N Q +IP GFAHGF+ L
Sbjct: 66 DCSQAKLVRVIKGKVLDVAVDLRKSSPTFGKYVSVELSEENKRQFFIPRGFAHGFLVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YKV + Y+ + ++ + + D++I I WP+ L +S+KD +
Sbjct: 126 EAVFTYKVDNVYAPQSEASIRFDDETIGIEWPVATEQL-LLSDKDGHAVSFKDA 178
>gi|270296766|ref|ZP_06202965.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D20]
gi|317480124|ref|ZP_07939234.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 4_1_36]
gi|270272753|gb|EFA18616.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D20]
gi|316903671|gb|EFV25515.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 4_1_36]
Length = 182
Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats.
Identities = 64/174 (36%), Positives = 105/174 (60%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V +++ + F D+RG+F + + + + F+QDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPKVFHDARGYFMEAFKEEEFRAHVGNVHFIQDNESKSS-FGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+QAKLVR I G++ D+AVD+R++SPT+G +VS+E+S N Q +IP GFAHGF+ L
Sbjct: 66 DCSQAKLVRVIKGKVLDVAVDLRKSSPTFGKYVSVELSEENKRQFFIPRGFAHGFLVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YKV + Y+ + ++ + + D++I I WP+ L +S+KD +
Sbjct: 126 EAVFTYKVDNVYAPQSEASIRFDDEAIGIEWPVATEQL-LLSDKDGHAVSFKDA 178
>gi|325275469|ref|ZP_08141397.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas sp. TJI-51]
gi|324099400|gb|EGB97318.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas sp. TJI-51]
Length = 181
Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats.
Identities = 70/176 (39%), Positives = 106/176 (60%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I++ + DSRG+F + ++++ + G+ FVQDNHS S G +RGLHFQ
Sbjct: 7 EIPDVLIIEPTVYGDSRGFFFEAFNAREFARQTGVNVEFVQDNHSSSVK-GVLRGLHFQV 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G I D+A+D+R++SPT+G WV++++SA N Q++IP GFAHGF L
Sbjct: 66 EN-TQGKLVRVVQGEIRDVALDVRKSSPTFGQWVAVDLSAANHRQLWIPAGFAHGFAVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD+Y+ D + W D + I W L P +S+KD+ + +
Sbjct: 125 ESAEFLYKTTDYYNPGADRCIRWDDPHLAIDWGLQQP--PLLSDKDKLGRAWAEAE 178
>gi|261400014|ref|ZP_05986139.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria lactamica ATCC
23970]
gi|269210232|gb|EEZ76687.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria lactamica ATCC
23970]
Length = 185
Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats.
Identities = 77/181 (42%), Positives = 102/181 (56%), Gaps = 9/181 (4%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
MNI V++LK + F+D RG+F +T+ KE FVQ+NHS S G +RG
Sbjct: 1 MNIIDTALPDVKLLKPQVFKDGRGFFMETFRDGWFKENIADRTFVQENHSQS-RKGVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHG
Sbjct: 60 LHYQTEN-TQGKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNRYQLWIPEGFAHG 118
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F L EV+YK TD+Y E + + W D +I I WPL P +S KD Q
Sbjct: 119 FYVLGDTAEVVYKCTDYYKPEAEQVLIWNDPAIGIGWPL--QTAPLLSPKDLAGKTWAQA 176
Query: 176 D 176
+
Sbjct: 177 E 177
>gi|21244308|ref|NP_643890.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas axonopodis pv.
citri str. 306]
gi|21109959|gb|AAM38426.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas axonopodis pv.
citri str. 306]
Length = 185
Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats.
Identities = 71/187 (37%), Positives = 104/187 (55%), Gaps = 9/187 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ F D RG+F +T++++ + GL FVQ N S S G +RGLH+Q P
Sbjct: 8 LPGCVVIEPAVFGDERGYFFETWNAERFGQHGLPTKFVQSNVSTSAK-GVLRGLHYQW-P 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV + G ++D+AVD+R SP +G W ++ +SA N Q +IP GFAHGF L
Sbjct: 66 RPQGKLVSVLEGEVYDVAVDVRHGSPNFGQWAAVVLSAENKKQFWIPEGFAHGFAVLSER 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
Y TD Y E D+GV W D +I I WP+ + P +S KD PFL + + +
Sbjct: 126 AVFSYLCTDVYVKEADAGVRWDDAAIGIDWPISN---PLLSAKDSAAPFLGDVPA----E 178
Query: 183 GLPLLSL 189
LP+ +
Sbjct: 179 RLPVYTP 185
>gi|254561587|ref|YP_003068682.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
DM4]
gi|254268865|emb|CAX24826.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
DM4]
Length = 183
Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats.
Identities = 82/178 (46%), Positives = 111/178 (62%), Gaps = 1/178 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+ + ++ D RGWFS+ Y + +L E G+ + FVQDN SFS GTIRGLHFQ
Sbjct: 7 EIPAVKRVIPKRHGDDRGWFSEIYRADILSEHGIANAFVQDNQSFSAPAGTIRGLHFQVA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKL+R +AG I D+AVD+R SP+YG V++ + A G Q+++P GFAHGF TLE
Sbjct: 67 PNAQAKLIRVLAGAILDVAVDLRSGSPSYGRHVAVRLDATGGEQLFVPAGFAHGFCTLEP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V YKV +YS D + W D +I I WP+ + +S KD+ P L + F
Sbjct: 127 DTMVAYKVDAYYSPADDRNLRWNDPAIGIAWPVAE-ADAILSGKDKAAPLLADLGRVF 183
>gi|212634444|ref|YP_002310969.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella piezotolerans WP3]
gi|212555928|gb|ACJ28382.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella piezotolerans WP3]
Length = 182
Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats.
Identities = 80/176 (45%), Positives = 110/176 (62%), Gaps = 7/176 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL----KELG-LQDVFVQDNHSFSFDCGTIRGLH 57
I V +++ + F D RG+F +TY E G + FVQ+N S S +RGLH
Sbjct: 8 IADVLLIEPKVFGDERGFFMETYRESEFKILFAEAGLIAPHFVQENMSRSAK-HVLRGLH 66
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
FQ+ Q KL+R ++G IFD+AVDIR++S T+G WV +SANN LQ+YIP GFAHGF+
Sbjct: 67 FQKS-KPQGKLIRVVSGEIFDVAVDIRQDSATFGQWVGQVLSANNRLQMYIPPGFAHGFL 125
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
TL ++IYK TD+Y E + VAW D +I I WPL ++LP +S+KD L+
Sbjct: 126 TLSEYADIIYKCTDYYVPEDEGHVAWDDANIGIDWPLSKSVLPILSDKDSGSSKLS 181
>gi|50120380|ref|YP_049547.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Pectobacterium atrosepticum
SCRI1043]
gi|49610906|emb|CAG74351.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Pectobacterium atrosepticum
SCRI1043]
Length = 178
Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats.
Identities = 67/172 (38%), Positives = 99/172 (57%), Gaps = 6/172 (3%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQRPPY 63
+I++ + F D+RG+F +T+ + +E+ + FVQDNHS S G +RGLHFQ+
Sbjct: 10 GAKIIQPKVFGDARGFFLETFEKRRYQEMLDIDVDFVQDNHSRSSK-GVLRGLHFQKTNP 68
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
Q KLVR + G +FD+AVDIR++SPTYG W +S N Q ++P G AHGF+ L
Sbjct: 69 -QGKLVRVVRGEVFDVAVDIRQDSPTYGKWYGALLSEENKTQFWLPPGLAHGFVVLSDIA 127
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK TD+Y + + W D + I WP+ P +SEKD+ +
Sbjct: 128 DFEYKCTDYYDPSDEGCLLWNDPDLGIEWPIS---TPQLSEKDKVGKLFKDL 176
>gi|319788036|ref|YP_004147511.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudoxanthomonas suwonensis
11-1]
gi|317466548|gb|ADV28280.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudoxanthomonas suwonensis
11-1]
Length = 185
Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats.
Identities = 72/174 (41%), Positives = 102/174 (58%), Gaps = 5/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ +++ F D RG F +T++++ + GL FVQ N S S G +RGLH+Q
Sbjct: 7 SLPGCVVIEPAVFGDERGVFFETWNAERFGQQGLPTRFVQSNVSTS-TRGVLRGLHYQW- 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLV + G ++D+AVDIRR SPT+G W ++ +SA N Q +IP GFAHGF L
Sbjct: 65 PRPQGKLVSVLEGEVYDVAVDIRRGSPTFGRWEAVVLSAENRRQFWIPEGFAHGFAVLSG 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ Y TD Y E+D+ V W D I + WP+ + P +S KD N PFL +I
Sbjct: 125 HAVFNYMCTDVYVKENDAAVRWNDGDIGVDWPIAE---PVLSAKDANAPFLAEI 175
>gi|329897709|ref|ZP_08272187.1| dTDP-4-dehydrorhamnose 3,5-epimerase [gamma proteobacterium
IMCC3088]
gi|328921056|gb|EGG28468.1| dTDP-4-dehydrorhamnose 3,5-epimerase [gamma proteobacterium
IMCC3088]
Length = 185
Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats.
Identities = 76/174 (43%), Positives = 107/174 (61%), Gaps = 6/174 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V I++ R F D RG+F +TYS++ K G+ FVQDNHS S G +RGLHFQ
Sbjct: 8 LPGVLIIEPRVFGDDRGFFLETYSAERYKTAGIP-EFVQDNHSRSSK-GVLRGLHFQL-N 64
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q KLVR ++G +FD+AVDIR SPT+G +E+SA N Q Y+P GFAHGF+ +
Sbjct: 65 YPQGKLVRVVSGSVFDVAVDIRVGSPTFGKAAWVELSAENKRQFYVPPGFAHGFVVTSVT 124
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ YK TD+Y E + + W D +++I WP+ +P +S KD + L I+
Sbjct: 125 ADFEYKCTDYYHPEDEGALLWSDAALNIPWPID---IPQLSAKDASAKRLADIN 175
>gi|167627477|ref|YP_001677977.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Francisella philomiragia
subsp. philomiragia ATCC 25017]
gi|167597478|gb|ABZ87476.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Francisella philomiragia
subsp. philomiragia ATCC 25017]
Length = 190
Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats.
Identities = 84/180 (46%), Positives = 111/180 (61%), Gaps = 3/180 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKL-LKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
IN + I + D RG+F +T+ LG + F QDN S S G +RGLH+Q
Sbjct: 8 INDIIICEPTVHSDDRGYFVETFRQDKLFDFLGYKINFCQDNESKSS-YGVLRGLHYQLA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVR I GR+ D+AVDIR+ SPT+G +V++E+SA N QI IP GFAHGF+ LE
Sbjct: 67 PHAQTKLVRVIQGRVLDVAVDIRKGSPTFGQYVAVELSAENKKQILIPRGFAHGFVVLED 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+T YKV +YS E D G+A+ DKSI I W + +L +S KD+ P L+ FEY
Sbjct: 127 DTVFAYKVDSYYSPECDRGIAFDDKSIAIDWQVPVDML-KLSAKDRGQPKLDDTVDLFEY 185
>gi|257440395|ref|ZP_05616150.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Faecalibacterium prausnitzii
A2-165]
gi|257197144|gb|EEU95428.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Faecalibacterium prausnitzii
A2-165]
Length = 188
Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats.
Identities = 65/172 (37%), Positives = 91/172 (52%), Gaps = 3/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +++ + F D RG+F +TY G+ FVQDN S S G +RGLHFQ+
Sbjct: 10 EIPGVVVIEPQVFGDDRGYFMETYQKDQFAAAGIDKEFVQDNQSRS-TRGVLRGLHFQK- 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G ++D+AVD R +S T+G WV + +S N YIP GFAHGF+ L
Sbjct: 68 NHTQGKLVRVTKGEVYDVAVDCRPHSATFGKWVGVTLSEENKKMFYIPEGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
E YK TD Y + G+ + D ++++ WP S KD+
Sbjct: 128 VAEFCYKCTDVYDPTSEGGIPYDDPTVNVQWP-DCGCEHKTSAKDKLHEPFA 178
>gi|282898469|ref|ZP_06306459.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein [Raphidiopsis
brookii D9]
gi|281196635|gb|EFA71541.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein [Raphidiopsis
brookii D9]
Length = 181
Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats.
Identities = 72/176 (40%), Positives = 109/176 (61%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V +++ + F D RG+F ++++ KL + G+ FVQDNHS S +RGLH+Q
Sbjct: 7 EIPDVLLIEPQVFGDERGFFYESFNEKLFAQKTGISPHFVQDNHSRSGK-NVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR AG +FDIAVD+R++SPT+ WV + IS+ N Q++IP GFAHGF+ L
Sbjct: 66 QQP-QGKLVRVTAGEVFDIAVDLRKSSPTFSQWVGVYISSANKHQLWIPPGFAHGFLVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD+Y+ + + + W D + I+WP+ D P VS KD++ +Q +
Sbjct: 125 EYADFLYKTTDYYAQKSERTILWNDPDLAISWPIGDE--PIVSSKDKSAQLFSQAE 178
>gi|307720179|ref|YP_003891319.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfurimonas autotrophica DSM
16294]
gi|306978272|gb|ADN08307.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfurimonas autotrophica DSM
16294]
Length = 192
Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats.
Identities = 76/182 (41%), Positives = 115/182 (63%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V +++ D RG+F +T+ + L+E LG + F QDN S S G +RGLH+Q
Sbjct: 7 EIPDVVLIEPVVHGDERGYFVETFRADKLEEFLGYKINFCQDNESKSSR-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KLVR I GR+ D+AVDIR+ S T+G V++E++A N Q+ +P GFAHGF+ LE
Sbjct: 66 HPAAQTKLVRVIQGRVLDVAVDIRKESLTFGKHVAVELNAENKHQLLVPRGFAHGFVVLE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T YKV ++YS E+D G+ + D++++I W + + L +S KD+ P L + + F+
Sbjct: 126 DDTIFAYKVDNYYSPENDRGILFSDEALNIDWTIPYSEL-KLSAKDKVQPKLTETNDIFD 184
Query: 181 YD 182
Y
Sbjct: 185 YK 186
>gi|298484051|ref|ZP_07002220.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D22]
gi|295084261|emb|CBK65784.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides xylanisolvens
XB1A]
gi|298269832|gb|EFI11424.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D22]
Length = 182
Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats.
Identities = 64/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V +++ + F D RG+F + Y + F+QDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPKVFSDERGYFMEAYKKEEFDANIGPVDFIQDNESKSS-FGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR + G++ D+AVD+R++SPT+G + + +S N Q +IP GFAHGF L
Sbjct: 66 EYSQAKLVRVLKGKVLDVAVDLRKSSPTFGKHICVLLSEENKRQFFIPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
YKV + Y+ + ++ + + D+++ I WPL D+ + +S KD+ + FE
Sbjct: 126 EAVFTYKVDNKYAPQAEASILYNDETLGIDWPLADSQM-VLSAKDREGTAFKDA-AYFE 182
>gi|78188492|ref|YP_378830.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Chlorobium
chlorochromatii CaD3]
gi|78170691|gb|ABB27787.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium chlorochromatii
CaD3]
Length = 197
Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats.
Identities = 71/181 (39%), Positives = 108/181 (59%), Gaps = 3/181 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V +L+ + F D RG+F +++ +++E Q FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IPEVLMLEPKVFGDERGYFFESFRQDVIEEHIGQVHFVQDNESKSS-YGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q+KLVR + G++ D+AVD+R SPT+G ++ + + +++P GFAHGF+ L
Sbjct: 67 YTQSKLVRALFGKVLDVAVDVRHGSPTFGQHITCLLDSERKNMLWVPKGFAHGFVVLSPE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK ++Y+ HD+G+AW D ++ I W L +S KD P L+ +D F YD
Sbjct: 127 AVFAYKCDNYYTPSHDAGIAWNDPALGIDWQLP-LADVRLSSKDAAQPSLSSVDC-FPYD 184
Query: 183 G 183
Sbjct: 185 A 185
>gi|333030494|ref|ZP_08458555.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides coprosuis DSM
18011]
gi|332741091|gb|EGJ71573.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides coprosuis DSM
18011]
Length = 184
Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats.
Identities = 68/179 (37%), Positives = 109/179 (60%), Gaps = 3/179 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ + I++ + F+D RG+F ++Y+ K E + F+QDN S S G +RGLHFQR
Sbjct: 8 LQGLYIIEPKVFKDQRGYFFESYNKKEFDEKVGRVEFIQDNESKSI-YGVVRGLHFQRGE 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+QAKLVR + G++ D+ VD+R++SP++G ++E+SA N Q+++P GFAHGF L
Sbjct: 67 YSQAKLVRVVQGKVLDVCVDLRKSSPSFGQIFTVELSAENHRQLFVPRGFAHGFSVLSEE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI-DSPFE 180
YK + Y+ E + +AW D + I W + + +SEKD++ L +I D F+
Sbjct: 127 VIFQYKCDNLYAPESEGAIAWNDPKLGIDWGIPANDI-ILSEKDKHHKPLAEISDWLFD 184
>gi|237745879|ref|ZP_04576359.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oxalobacter formigenes
HOxBLS]
gi|229377230|gb|EEO27321.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oxalobacter formigenes
HOxBLS]
Length = 189
Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats.
Identities = 70/171 (40%), Positives = 96/171 (56%), Gaps = 2/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V I++ + F D RG+F ++Y+ K+ GL VFVQDN S S GTIRG+HFQ
Sbjct: 8 LEGVYIIEPKVFSDPRGYFFESYNQDKFKKAGLDYVFVQDNQSKSS-YGTIRGIHFQTGK 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLV + G + DIAVD+R SPT+G V++E+S N Q+ IP GF HGF L
Sbjct: 67 HAQTKLVWVLQGTVLDIAVDLRVGSPTFGQHVAVELSGENYRQLLIPRGFGHGFSVLSET 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
YK +FY + V + D + I W + D +SEKD+ P
Sbjct: 127 AVFSYKCDNFYMPSSEGSVRFDDPDLAIDWRV-DRKRALLSEKDKTAPDFQ 176
>gi|83720588|ref|YP_442017.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia thailandensis
E264]
gi|167618956|ref|ZP_02387587.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia thailandensis
Bt4]
gi|257138200|ref|ZP_05586462.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia thailandensis
E264]
gi|83654413|gb|ABC38476.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia thailandensis
E264]
Length = 183
Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 111/175 (63%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F ++++++ EL FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPKVFGDARGFFFESFNAREFSELVEPGVEFVQDNHSRSAR-GVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVD+RR+SP +G WV + +SA N Q+++P GFAHGF+ L
Sbjct: 69 -HAQGKLVRVVDGEVFDVAVDVRRSSPNFGKWVGVRLSAENKRQLWVPAGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + +YK TD++ E + + W D+ I I WP+ P V+ KD L++ +
Sbjct: 128 SADFLYKTTDYWYPEFERSILWSDEQIGIEWPI--DREPLVAAKDAAGKTLSEAE 180
>gi|269793219|ref|YP_003318123.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100854|gb|ACZ19841.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 186
Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats.
Identities = 73/185 (39%), Positives = 111/185 (60%), Gaps = 7/185 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+++ + ++ F DSRG+F QT+ ++ ++ G+ + FVQDN S S GT+RGLH+Q+
Sbjct: 6 LSLPGLLHIEPVFFGDSRGYFLQTWQARQYRDAGISEFFVQDNLSLS-RKGTLRGLHYQK 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLV + G ++D+AVD+R SPT+G W + + Q+YIP GFAHGF +
Sbjct: 65 -PNTQGKLVFVLKGEVWDVAVDLRVGSPTFGKWEGVTLKGQTHNQLYIPPGFAHGFCVIS 123
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI--DSP 178
YK TDFY+ +++ G+ W D +DI WP+ D P +S KD P L I +S
Sbjct: 124 DEALFTYKCTDFYAPQNEHGIIWNDPDLDIPWPVKD---PILSAKDGRYPRLRDIPGESL 180
Query: 179 FEYDG 183
F ++G
Sbjct: 181 FRWEG 185
>gi|585831|sp|P37763|RMLC_NEIGO RecName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; AltName:
Full=Thymidine diphospho-4-keto-rhamnose 3,5-epimerase;
AltName: Full=dTDP-4-keto-6-deoxyglucose 3,5-epimerase;
AltName: Full=dTDP-6-deoxy-D-xylo-4-hexulose
3,5-epimerase; AltName: Full=dTDP-L-rhamnose synthase
gi|520898|emb|CAA83654.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae]
gi|1333795|emb|CAA79720.1| rfbC [Neisseria gonorrhoeae]
Length = 328
Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats.
Identities = 76/181 (41%), Positives = 102/181 (56%), Gaps = 9/181 (4%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M+I V++LK + F D RG+F +T+ KE FVQ+NHS S G +RG
Sbjct: 1 MDIIDTALPDVKLLKPQVFTDGRGFFMETFRDGWFKENIADRTFVQENHSNSSK-GVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHG
Sbjct: 60 LHYQTEN-TQGKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNRYQLWIPEGFAHG 118
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F L EV+YK TD+Y+ E + + W D +I I WPL P +S KD Q
Sbjct: 119 FCVLGDAAEVVYKCTDYYNPETEQVLIWNDPAIGIGWPL--QTAPLLSPKDLAGKTWAQA 176
Query: 176 D 176
+
Sbjct: 177 E 177
>gi|299140529|ref|ZP_07033667.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella oris C735]
gi|298577495|gb|EFI49363.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella oris C735]
Length = 182
Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 107/175 (61%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ F D+RG+F + + ++ ++ + F+QDN S S G +RGLH+Q+
Sbjct: 7 EIKGVYIIEPHVFNDARGYFFEAWKNEEFQQYVGKINFIQDNESKSS-YGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR I G++ D+AVDIR++SPT+G +V +E+S N Q +IP GFAHGF+ L
Sbjct: 66 EYSQAKLVRVIKGKVLDVAVDIRKSSPTFGKYVMVELSDENKRQFFIPRGFAHGFLVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YKV + Y+ +H++ + W D+ I I WP+ +T SEKD L +
Sbjct: 126 EAIFTYKVDNVYAPQHEASIRWNDEDIHIEWPI-ETKDVLTSEKDLKASSLKDAE 179
>gi|170019636|ref|YP_001724590.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli ATCC 8739]
gi|169754564|gb|ACA77263.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli ATCC 8739]
Length = 177
Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 107/166 (64%), Gaps = 3/166 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + +KFEDSRG+F ++++ +L + +G + +FVQDN S+S +RGLH+Q
Sbjct: 7 EIPEVLIFEPKKFEDSRGYFFESFNQRLFEDAVGKEILFVQDNQSYSSK-NVLRGLHYQS 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRCI G +FD+AVDIR+ S +YG WV + +S +N Q++IP GFAHGF+
Sbjct: 66 EPYAQGKLVRCIMGEVFDVAVDIRKESESYGQWVGVFLSEDNNRQLWIPEGFAHGFLVKS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK T+FY+ ++ + W + I WPL D L +SEKD
Sbjct: 126 DKAIFAYKCTNFYNPSAENTIRWDSPDLAIEWPLDDEDL-LISEKD 170
>gi|257468314|ref|ZP_05632410.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium ulcerans ATCC
49185]
gi|317062592|ref|ZP_07927077.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium ulcerans ATCC
49185]
gi|313688268|gb|EFS25103.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium ulcerans ATCC
49185]
Length = 193
Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats.
Identities = 83/177 (46%), Positives = 110/177 (62%), Gaps = 6/177 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + IL+ F D RG+F +TY+ K +E+G+ + FVQDNHS S G +RGLHFQ
Sbjct: 10 GIEGLYILEPTIFGDERGFFLETYNKKEFEEIGIFEEFVQDNHSKS-KKGVLRGLHFQTK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G ++D+AVDIR+NS TYG W +E+SA N +IP GFAHGF+TLE
Sbjct: 69 -HPQGKLVRVLKGSVYDVAVDIRKNSSTYGKWYGIELSAENKKIFFIPKGFAHGFLTLED 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL----PSVSEKDQNLPFLNQ 174
TE YK TDFY ++DSG+ W DK I+I W L +SEKD+ +
Sbjct: 128 ETEFQYKCTDFYMPQYDSGIMWNDKEININWNFEKYGLKEEGIVLSEKDKKHQTFKE 184
>gi|291520149|emb|CBK75370.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Butyrivibrio fibrisolvens
16/4]
Length = 192
Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats.
Identities = 69/176 (39%), Positives = 102/176 (57%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ + F D RG+F +TY+ +K GL FVQDN S S G +RGLHFQ+
Sbjct: 11 GIEGLCVITPKVFGDDRGYFMETYNENDMKAEGLDYEFVQDNQSAS-KKGVLRGLHFQK- 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR I+G ++D+AVD+R S T+G + +SA N Q IP GFAHGF+ +
Sbjct: 69 NFPQDKLVRVISGEVYDVAVDLREGSKTFGQHYGILLSAENKKQFMIPKGFAHGFLVVSD 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILP---SVSEKDQNLPFLNQ 174
E YKVTDFY + G+A+ D I++ WP+ + + +S+KD+ +
Sbjct: 129 YAEFCYKVTDFYHPNDEGGLAFDDPDINVQWPIPEGMTKEDLILSDKDKVNASFKE 184
>gi|167580855|ref|ZP_02373729.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia thailandensis
TXDOH]
Length = 183
Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 111/175 (63%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F ++++++ EL FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPKVFGDARGFFFESFNAREFSELVEPGVEFVQDNHSRSAR-GVLRGLHYQIE 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVD+RR+SP +G WV + +SA N Q+++P GFAHGF+ L
Sbjct: 69 -HAQGKLVRVVDGEVFDVAVDVRRSSPNFGKWVGVRLSAENKRQLWVPAGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + +YK TD++ E + + W D+ I I WP+ P V+ KD L++ +
Sbjct: 128 SADFLYKTTDYWYPEFERSILWSDEQIGIEWPI--DREPLVAAKDAAGKTLSEAE 180
>gi|319788849|ref|YP_004090164.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruminococcus albus 7]
gi|315450716|gb|ADU24278.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruminococcus albus 7]
Length = 194
Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats.
Identities = 68/176 (38%), Positives = 101/176 (57%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + +++ D+RG+F +TY+ K ++ GL FVQDN S S G +RGLH+Q
Sbjct: 12 GIEGLCVIEPAVHGDNRGYFMETYNQKDMEAEGLNYTFVQDNQS-SSTKGVLRGLHYQF- 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR I G +FD+AVD+R+ S T+G W ++++ N Q IP FAHGF+ L
Sbjct: 70 NHPQDKLVRVIRGEVFDVAVDLRKGSKTFGKWFGIKLTEENKKQFLIPKNFAHGFIVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL---PSVSEKDQNLPFLNQ 174
E YKVTDF+ + G+ W D +I I W + + + ++SEKD N+
Sbjct: 130 EAEFCYKVTDFWYPNDEGGLMWNDPTIGIEWEMPEGMTDADLNLSEKDTKNLSFNE 185
>gi|124004205|ref|ZP_01689051.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Microscilla marina ATCC
23134]
gi|123990275|gb|EAY29774.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Microscilla marina ATCC
23134]
Length = 183
Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 3/178 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ + + + R FED RG+F ++++ K G+ F+QDNHSFS G +RGLHFQ+P
Sbjct: 8 LKDLWLFEPRIFEDDRGYFYESFNQNEFTKATGITSPFIQDNHSFS-KKGVLRGLHFQKP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQAKL++ I G I+D+ VD+R++SPT+ + E+SA N Q+Y+P GFAHGF+ L
Sbjct: 67 PHAQAKLIKVIQGTIWDVVVDLRKDSPTFSQHLGFELSAGNKKQLYVPQGFAHGFIVLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ EV+YK +FY+ + +SG+ + D + I W + D+ +SEKD L + PF
Sbjct: 127 SAEVLYKCDNFYAPQAESGIIYNDSDLAIDWKI-DSSNIIISEKDAVLATFQPSNIPF 183
>gi|220909658|ref|YP_002484969.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 7425]
gi|219866269|gb|ACL46608.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 7425]
Length = 181
Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats.
Identities = 75/168 (44%), Positives = 109/168 (64%), Gaps = 5/168 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V IL+ + + D RGWF ++++++ +E GL FVQDNHS+S +RGLH+Q
Sbjct: 7 EIPEVLILEPQVYGDQRGWFYESFNTRTFQEKTGLAVDFVQDNHSYS-QHHVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR +AG +FD+AVD+R++S T+G WV +E+S N Q++IP+GFAHGF+ L
Sbjct: 66 QQP-QGKLVRAVAGMVFDVAVDLRKSSRTFGQWVGVELSGENHRQLWIPSGFAHGFLVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
EV+YK TD+Y+ ++D + W D + I WPL T +S KDQ
Sbjct: 125 ETAEVLYKTTDYYAPQYDRCLLWNDPDLAIAWPLTGTA--ILSAKDQA 170
>gi|186684649|ref|YP_001867845.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nostoc punctiforme PCC 73102]
gi|186467101|gb|ACC82902.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nostoc punctiforme PCC 73102]
Length = 181
Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats.
Identities = 76/176 (43%), Positives = 105/176 (59%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V L+ + F D RG+F + Y+ + E G+ FVQDNHS S +RGLH+Q
Sbjct: 7 KIPEVLQLEPKVFADDRGFFFEAYNDRKFAQETGIVANFVQDNHSCS-KQNVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G IFD+AVDIR++S T+G WV+ E+SA N ++IP GFAHGF+ L
Sbjct: 66 QQP-QGKLVRAVVGTIFDVAVDIRKSSTTFGKWVAYELSAENKRLLWIPPGFAHGFLVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EV+YK TD+Y+ + D + W D + I WPL + P +S KDQ +L +
Sbjct: 125 EVAEVLYKATDYYAPQGDRTILWNDPDLAIDWPL--SASPILSAKDQAGKYLRTAE 178
>gi|254374810|ref|ZP_04990291.1| hypothetical protein FTDG_00986 [Francisella novicida GA99-3548]
gi|151572529|gb|EDN38183.1| hypothetical protein FTDG_00986 [Francisella novicida GA99-3548]
Length = 193
Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats.
Identities = 85/190 (44%), Positives = 115/190 (60%), Gaps = 4/190 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKL-LKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + D RG+F +++ LG + F QDN S S G IRGLH+Q
Sbjct: 7 KIADVVICEPILHGDERGYFIESFREDRLFDFLGYKINFCQDNESKSS-YGVIRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PPYAQ KLVR I G++ D+AVDIR+ SPT+G V +E+SA+N Q+ +P GFAHGF+ LE
Sbjct: 66 PPYAQTKLVRVIQGKVLDVAVDIRKGSPTFGQHVVVELSAHNKRQLLVPRGFAHGFVVLE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T YKV ++YS E D G+A+ DK I I W L L +S KD+ P L++ D FE
Sbjct: 126 NDTIFSYKVDNYYSPECDRGIAFDDKDIAIDWQLPMGSL-KLSTKDKTQPKLSETDDLFE 184
Query: 181 YDGLPLLSLN 190
+ G+ + N
Sbjct: 185 F-GVDYYTNN 193
>gi|254458145|ref|ZP_05071571.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacterales bacterium
GD 1]
gi|207084981|gb|EDZ62267.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacterales bacterium
GD 1]
Length = 191
Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats.
Identities = 83/180 (46%), Positives = 116/180 (64%), Gaps = 3/180 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I + D+RG+F +T+ L+E LG + F QDN S S G +RGLH+Q P
Sbjct: 8 IKDIIICEPEIHGDTRGYFVETFRQDKLEEFLGFKINFCQDNESKSSK-GVLRGLHYQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY+Q KL+R I GR+ DIAVDIR++SPT+G VS+E++A N Q+ IP GFAHGF+ LE
Sbjct: 67 PYSQTKLLRVIQGRVLDIAVDIRKDSPTFGEHVSIELTAENKKQLLIPHGFAHGFVVLED 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+T YKV ++YS E+D G+A+ D + I W + D L ++S+KD P L + FEY
Sbjct: 127 DTIFAYKVDNYYSPENDRGIAFDDPDLGIDWQV-DFSLLNLSQKDTKQPRLKATNDLFEY 185
>gi|113868861|ref|YP_727350.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia eutropha H16]
gi|113527637|emb|CAJ93982.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia eutropha H16]
Length = 183
Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats.
Identities = 71/175 (40%), Positives = 111/175 (63%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V +++ + F D RG+F +T++++ ++ G++ FVQDNHS S +RGLH+Q
Sbjct: 10 LPEVLVIEPQVFSDQRGFFMETFNAQAFEQATGIRRTFVQDNHSGSVR-NVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KL+R IAG +FD+AVD+R SPTYG WV + +SA + Q++IP GFAHGF+ L
Sbjct: 69 -HPQGKLIRVIAGEVFDVAVDVRLGSPTYGKWVGVTVSAADKKQLWIPEGFAHGFLVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ EV+YK TD++ EH+ + W D ++ + WPL P ++ KD L + D
Sbjct: 128 HAEVLYKTTDYWYPEHERTLLWNDPAVGVRWPLNGA--PLLTAKDAAGKLLTEAD 180
>gi|167586360|ref|ZP_02378748.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ubonensis Bu]
Length = 183
Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats.
Identities = 73/175 (41%), Positives = 111/175 (63%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F ++++++ E FVQDNHS S + G +RGLH+Q
Sbjct: 10 LPEVKIIEPKVFGDARGYFYESFNAREFAEQVEPGVEFVQDNHSRS-EKGVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR I G +FD+AVDIR++SPT+G WV + +SA N Q+++P GFAHGF+ L
Sbjct: 69 -HAQGKLVRVIQGEVFDVAVDIRKSSPTFGEWVGVYLSAANHRQLWVPAGFAHGFLALTA 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TDF+ E++ + W D + ITWPL P ++ KD L +
Sbjct: 128 SCEFLYKTTDFWYPEYERCLQWNDPDVGITWPLDTP--PVLATKDAAGVRLVDAE 180
>gi|46579112|ref|YP_009920.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio vulgaris str.
Hildenborough]
gi|120603309|ref|YP_967709.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio vulgaris DP4]
gi|46448525|gb|AAS95179.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio vulgaris str.
Hildenborough]
gi|120563538|gb|ABM29282.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio vulgaris DP4]
gi|311232955|gb|ADP85809.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio vulgaris RCH1]
Length = 190
Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats.
Identities = 78/180 (43%), Positives = 106/180 (58%), Gaps = 3/180 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ +R+L + D RG+F +TY L FVQDNH+ S D G +RGLHFQ P
Sbjct: 7 GLPGLRLLTPQAHRDERGFFLETYRESFFDTLTHGQRFVQDNHARSEDAGVLRGLHFQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P QAKLV + G I+D+AVD+R SPT+G W ++A + +IY+P GFAHG+MTLE
Sbjct: 67 PMTQAKLVWAVQGSIYDVAVDLREGSPTFGRWFGCTLTAASFQRIYVPRGFAHGYMTLEP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
TEV+YKV +Y+ + G+ W D I ITWP + P +S KDQ +PF +
Sbjct: 127 GTEVMYKVDAYYAPALEQGLPWNDPDIGITWP---DMTPILSAKDQRHGTFRDFRTPFSF 183
>gi|93115472|gb|ABE98432.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli]
Length = 177
Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats.
Identities = 75/165 (45%), Positives = 107/165 (64%), Gaps = 3/165 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I + +KFEDSRG+F ++++ +L + +G + +FVQDN S+S +RGLH+Q
Sbjct: 8 IPEVLIFEPKKFEDSRGYFFESFNQRLFEDAVGKETLFVQDNQSYSSK-NVLRGLHYQSE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ KLVRCI G +FD+AVDIR+ S +YG WV + +S +N Q++IP GFAHGF+
Sbjct: 67 PYAQGKLVRCIMGEVFDVAVDIRKESESYGQWVGVFLSEDNNRQLWIPEGFAHGFLVKSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK T+FY+ ++ + W + I WPL D L +SEKD
Sbjct: 127 KAIFAYKCTNFYNPSAENTIRWDSPDLAIEWPLDDEDL-LISEKD 170
>gi|188581603|ref|YP_001925048.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium populi
BJ001]
gi|179345101|gb|ACB80513.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium populi
BJ001]
Length = 183
Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats.
Identities = 85/178 (47%), Positives = 112/178 (62%), Gaps = 1/178 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+ + ++ D RGWFS+ Y + +L E G+ + FVQDN SFS GTIRGLHFQ
Sbjct: 7 EIPAVKRVIPKRHGDGRGWFSEVYRADVLAEHGIANAFVQDNQSFSAPAGTIRGLHFQVA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKLVR +AG I D+AVD+R +SP+YG V++ + A G Q+++P GFAHGF TLE
Sbjct: 67 PNAQAKLVRVLAGAILDVAVDLRSDSPSYGRHVAVRLDAAGGEQLFVPAGFAHGFCTLEP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
NT V YKV +YS D + W D +I I WP+ D +S KD+ P L + F
Sbjct: 127 NTMVAYKVDAYYSPADDRNLRWNDPAIGIEWPVAD-ADAILSGKDKGAPLLADLGRVF 183
>gi|83859876|ref|ZP_00953396.1| hypothetical protein OA2633_07744 [Oceanicaulis alexandrii
HTCC2633]
gi|83852235|gb|EAP90089.1| hypothetical protein OA2633_07744 [Oceanicaulis alexandrii
HTCC2633]
Length = 186
Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats.
Identities = 81/182 (44%), Positives = 110/182 (60%), Gaps = 3/182 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V+++ ++F D RGWF++T+SS L LG FVQDN S+S GT+RGLH Q
Sbjct: 6 LQIPDVKLISPKRFRDDRGWFNETWSSDKLAGLGFVQSFVQDNLSYSSASGTLRGLHCQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP AQ KLV + G I+D VD+R SPT+G V +E+ N Q++IP GF HGF+T
Sbjct: 66 PPCAQGKLVSVVTGAIWDFVVDVRTGSPTFGQSVRIELDENTPHQLWIPEGFLHGFLTRA 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T V YKVT YS HD +AW D + + W + D P +S+KD+ P L D F
Sbjct: 126 PDTRVSYKVTAPYSPAHDRSIAWNDPFLGLAWGVAD---PVLSDKDRQAPQLKNSDVHFT 182
Query: 181 YD 182
Y+
Sbjct: 183 YE 184
>gi|167563827|ref|ZP_02356743.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia oklahomensis
EO147]
Length = 183
Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 109/175 (62%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F ++++++ EL FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPKAFGDARGFFFESFNAREFAELVEPGVEFVQDNHSRSAR-GVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVD+R++SP +G WV + +SA N Q+++P GFAHGF+ L
Sbjct: 69 -HAQGKLVRVVEGEVFDVAVDVRKSSPNFGKWVGVNLSAENKRQLWVPAGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD++ E + + W DK I I WP+ P V+ KD L + +
Sbjct: 128 TADFLYKTTDYWYPEFERSILWSDKQIGIDWPM--DREPLVAAKDAAGKLLGEAE 180
>gi|75674744|ref|YP_317165.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Nitrobacter
winogradskyi Nb-255]
gi|74419614|gb|ABA03813.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrobacter winogradskyi
Nb-255]
Length = 198
Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats.
Identities = 69/176 (39%), Positives = 99/176 (56%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I + R F D RG+F +TY E G+ FVQDN S S G +RGLH Q
Sbjct: 21 EVPEVVIFEPRLFGDQRGFFLETYQFPRYAEHGVTRPFVQDNLSRSAR-GVLRGLHLQN- 78
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLV + G++ D+AVD+R SP +G V++E+S N Q+++P GFAHGF+ L
Sbjct: 79 PSPQGKLVTVLRGKVLDVAVDVRAGSPNFGRHVAVELSEENRRQLWVPRGFAHGFVVLSE 138
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ YK D YS +++ + W D +I I W + PS+S KD + P L + +
Sbjct: 139 TADFFYKCDDLYSPKNELSIRWNDPTIGIDWGVE---TPSLSAKDADAPLLADVKN 191
>gi|170734748|ref|YP_001773862.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia cenocepacia
MC0-3]
gi|169820786|gb|ACA95367.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia cenocepacia
MC0-3]
Length = 193
Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats.
Identities = 65/175 (37%), Positives = 100/175 (57%), Gaps = 3/175 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V +++ F D+RG+F +++ + L++ G+ FVQDN S S G +RGLH+QR
Sbjct: 9 LPGVLLIEPGVFGDARGFFVESFRASWLRDAGVDATFVQDNQSRS-RRGVLRGLHYQRVN 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV G ++D+AVDIR SP +GCW ++ + ++IP GFAHGF L
Sbjct: 68 P-QGKLVHAARGAVYDVAVDIRYGSPFFGCWFGAQLDDVSHRMLWIPPGFAHGFCVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ YK T +Y + D+GV W D +I I WP +S+KD+ P L ++ +
Sbjct: 127 ADFAYKCTQYYDPDSDAGVRWDDPAIGIDWP-DSGAPYQLSDKDRRQPPLAELAA 180
>gi|224539908|ref|ZP_03680447.1| hypothetical protein BACCELL_04819 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518462|gb|EEF87567.1| hypothetical protein BACCELL_04819 [Bacteroides cellulosilyticus
DSM 14838]
Length = 182
Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats.
Identities = 68/179 (37%), Positives = 106/179 (59%), Gaps = 3/179 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V +++ + D RG+F + + + K F+QDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPKVLRDERGYFMEAFKEEEFKMHIGDVHFIQDNESKSS-FGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q+KLVR I G++ D+AVD+R++SPT+G +VS E+S N Q +IP GFAHGF+ L
Sbjct: 66 EYCQSKLVRVIKGKVLDVAVDLRQSSPTFGKYVSAELSEENQRQFFIPRGFAHGFLVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
IYKV + Y + ++ + + D++I I WP+ + L +S KD+ P + FE
Sbjct: 126 EAIFIYKVDNAYVPQAEASIRFNDETIGIEWPIAEEQL-LLSPKDKTAPSFRDA-TYFE 182
>gi|262066767|ref|ZP_06026379.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium periodonticum
ATCC 33693]
gi|291379570|gb|EFE87088.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium periodonticum
ATCC 33693]
Length = 187
Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats.
Identities = 73/177 (41%), Positives = 109/177 (61%), Gaps = 5/177 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + IL+ R FEDSRG+F ++Y+ KE+G+ ++FVQDN S S +RGLHFQ+
Sbjct: 7 EIKDLLILEPRVFEDSRGFFMESYNYNTFKEIGIDNIFVQDNISKSSKA-VLRGLHFQKD 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
YAQAKLV + G + D+ VD+R NS T+G + ++E++ N ++IP GFAH F+TLE
Sbjct: 66 EYAQAKLVYVLRGAVLDVTVDLRENSETFGKYEAVELNEKNKRMLFIPRGFAHAFLTLEN 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPFLNQ 174
+TE IYK +FY+ + + G+ W D ++I W L +SEKD+ +
Sbjct: 126 DTEFIYKCDNFYNPKSEVGIVWNDVDLNINWNLEKYNIKEEELIISEKDKKNITFKE 182
>gi|266620081|ref|ZP_06113016.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium hathewayi DSM
13479]
gi|288868310|gb|EFD00609.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium hathewayi DSM
13479]
Length = 221
Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats.
Identities = 68/173 (39%), Positives = 99/173 (57%), Gaps = 2/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI + +++ + F D RG+ + Y + +E GL VFVQDN S S GT+RG+HFQ+
Sbjct: 11 NIEGLYLVEPQVFADERGYNFEAYHAGSFREAGLDMVFVQDNLSMSAK-GTLRGMHFQK- 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLV + G +FD VDIR S TYG W +SA +Y+P GFAHGF+ L
Sbjct: 69 NYQQGKLVCVVCGEVFDAVVDIREGSRTYGQWFGTVLSAEKKNMLYVPEGFAHGFLVLSD 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
YK+++ Y E +SG+ W D+++ I WP+ + + SE+D P +
Sbjct: 129 TAVFSYKLSEHYHPEDESGIPWNDETVGIRWPIPEDMTVLTSERDSCHPAFGE 181
>gi|297718756|gb|ADI50280.1| sugar 3,5-epimerase [Streptomyces sp. MK730-62F2]
Length = 201
Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats.
Identities = 56/177 (31%), Positives = 89/177 (50%), Gaps = 4/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I +L+ + F D RG F + Y +E G Q N S S G +RG+HF
Sbjct: 4 LAIEGAWVLEPKIFPDDRGSFHEWYRGAEFREATGHDLSLAQANCSVS-RRGVLRGVHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G + D+ +DIR SPTYG W ++ + + +++ G H FM L
Sbjct: 63 DVPPGQAKYVTCVRGAVLDVVIDIRVGSPTYGTWEAVRLDDDTRHAVFLAEGLGHAFMAL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ V+Y ++ Y+ + G+ D ++ I WP + I P +S KD+ P L + +
Sbjct: 123 TDDATVVYLCSEGYAPGREHGIHPLDPALGIEWP--EGITPLLSPKDEQAPTLAEAE 177
>gi|240138979|ref|YP_002963454.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
AM1]
gi|240008951|gb|ACS40177.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
AM1]
Length = 183
Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats.
Identities = 82/178 (46%), Positives = 112/178 (62%), Gaps = 1/178 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+ + ++ D RGWFS+ Y + +L E G+ + FVQDN SFS GTIRGLHFQ
Sbjct: 7 EIPAVKRVIPKRHGDDRGWFSEIYRADILSEHGIANAFVQDNQSFSAPAGTIRGLHFQVA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKL+R +AG I D+AVD+R +SP+YG V++ + A G Q+++P GFAHGF TLE
Sbjct: 67 PNAQAKLIRVLAGAILDVAVDLRSDSPSYGRHVAVRLDATGGEQLFVPAGFAHGFCTLEP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V YKV +YS D + W D +I I WP+ + +S KD+ P L + F
Sbjct: 127 DTMVAYKVDAYYSPADDRNLRWNDPAIGIAWPVAE-ADAILSGKDKAAPLLADLGRVF 183
>gi|332306499|ref|YP_004434350.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332173828|gb|AEE23082.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 182
Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats.
Identities = 65/173 (37%), Positives = 100/173 (57%), Gaps = 2/173 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+N V I + + F D RG+F +T+ + L E VQDNHS S G +RGLH+Q
Sbjct: 8 LNDVLIFEPKVFGDERGFFMETFRADLFTETTGVQTLVQDNHSKSRQ-GILRGLHYQLE- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR G ++D+ VD+R++S T+G LE+S N Q+++P GFAHGF
Sbjct: 66 HTQGKLVRVTQGSVYDVVVDLRQSSSTFGQSFGLELSVQNNKQLWVPAGFAHGFYVTSET 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK +D+Y + + + W D ++I WPL++ +P++SEKD+
Sbjct: 126 AEFVYKCSDYYHPQSEVSILWNDPDLNIEWPLVNGDVPALSEKDKVGCLFKDA 178
>gi|120555539|ref|YP_959890.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Marinobacter aquaeolei VT8]
gi|120325388|gb|ABM19703.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Marinobacter aquaeolei VT8]
Length = 186
Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats.
Identities = 72/172 (41%), Positives = 106/172 (61%), Gaps = 4/172 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V IL+ R F D RGWF ++++++ +G FVQDNHS S G +RG+HFQ
Sbjct: 8 LEGVLILEPRVFGDDRGWFYESFNAERFADAVGKPVAFVQDNHSRSAK-GVLRGIHFQTG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVR G +FDIAVD+R++SPT+G W + +SA N Q+++P GF H F+
Sbjct: 67 RAAQGKLVRATFGEVFDIAVDLRKSSPTFGQWTGVLLSAENKRQLWVPAGFGHAFLVTSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
EV YKV ++S EH+ + W D ++ + WP + + +SEKD++ P LN
Sbjct: 127 VAEVQYKVDAYWSAEHERSLRWDDPAVAVEWPEVGEV--QLSEKDRHAPDLN 176
>gi|313683244|ref|YP_004060982.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Sulfuricurvum kujiense DSM
16994]
gi|313156104|gb|ADR34782.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfuricurvum kujiense DSM
16994]
Length = 197
Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats.
Identities = 79/181 (43%), Positives = 109/181 (60%), Gaps = 4/181 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V ++ + D RG+F +T+ + L+ LG F QDN S S G +RGLH+Q
Sbjct: 7 EIPDVIVIDPKVHGDERGYFVETFRADKLEAFLGFTIPFCQDNESKSS-YGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ+KLVR I G + D+AVDIR+ SPT+G VS+ +S N Q++IP GFAHGF+ L
Sbjct: 66 PPHAQSKLVRVIDGEVLDVAVDIRKGSPTFGRHVSVRLSGENKRQLFIPRGFAHGFVVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
YKV ++YS E D G+A+ D SI I W + + L +S KD P LN D F+
Sbjct: 126 ETCTFAYKVDNYYSPECDRGIAFDDPSIGIDWHVNHSDL-QLSPKDTEQPLLNAAD-LFD 183
Query: 181 Y 181
+
Sbjct: 184 F 184
>gi|218779339|ref|YP_002430657.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfatibacillum
alkenivorans AK-01]
gi|218760723|gb|ACL03189.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfatibacillum
alkenivorans AK-01]
Length = 184
Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats.
Identities = 72/177 (40%), Positives = 97/177 (54%), Gaps = 5/177 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V I++ F D RG F +TY S GL FVQDN S S + +RGLH+Q
Sbjct: 7 SLPGVLIIEPSVFSDHRGLFMETYHSGRFAAHGLDVKFVQDNLSISGE-NVLRGLHYQIT 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ QAKLV+ + GRIFD+AVD+R+ SPT+G W + + Q++IP GFAHGF L
Sbjct: 66 -HVQAKLVQAVQGRIFDVAVDVRKGSPTFGQWTGAVLDDESHRQMFIPAGFAHGFCVLSK 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
V YK Y+ + + W D + + WPL D P +SEKDQ P L I
Sbjct: 125 EARVCYKCDALYAPGDEGTLLWSDPDVGVEWPLSD---PILSEKDQAGPRLKDIPPN 178
>gi|323345500|ref|ZP_08085723.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella oralis ATCC 33269]
gi|323093614|gb|EFZ36192.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella oralis ATCC 33269]
Length = 182
Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 105/175 (60%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I++ F D+RG+F + + + + F+QDN S S G +RGLH+QR
Sbjct: 7 EIQGVWIIEPEVFNDTRGYFFEVWKQSDFNKHIGEIHFIQDNESKSA-FGVLRGLHYQRG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR I G++ D+AVDIRR+SPT+G ++ +E+S +N Q +IP GFAHGF+ L
Sbjct: 66 TYSQAKLVRVIKGKVLDVAVDIRRSSPTFGKYIMVELSDDNKKQFFIPRGFAHGFLVLSN 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YKV + Y+ +H++ + W D ++I WP+ D S+KD P L +
Sbjct: 126 EAIFTYKVDNAYAPQHEANICWNDPELNIKWPI-DPAKIITSQKDLAAPLLKNAE 179
>gi|269121010|ref|YP_003309187.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sebaldella termitidis ATCC
33386]
gi|268614888|gb|ACZ09256.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sebaldella termitidis ATCC
33386]
Length = 189
Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats.
Identities = 80/185 (43%), Positives = 114/185 (61%), Gaps = 13/185 (7%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ FED RG+F ++Y+ ++LGL+ F+QDNHS S G +RGLH+Q
Sbjct: 10 GIADLVIIEPLVFEDERGFFLESYNKNHFEKLGLKMEFIQDNHSKS-KKGVLRGLHYQSK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
++Q KLVR G ++D+AVD+R SPT+G W LE++ N Y+P GFAHGF+TLE
Sbjct: 69 -HSQGKLVRVTKGAVWDVAVDLRTESPTFGKWYGLELNEKNKKMFYVPEGFAHGFLTLED 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS----VSEKDQNLPFLNQIDS 177
TE YK TDFY E+DSG+ W D + I WP+ D + +S+KD+NL
Sbjct: 128 ETEFQYKCTDFYYPEYDSGIFWNDDILKIEWPISDYGILINELVISDKDKNL-------E 180
Query: 178 PFEYD 182
F+Y+
Sbjct: 181 KFDYE 185
>gi|109898447|ref|YP_661702.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudoalteromonas atlantica
T6c]
gi|109700728|gb|ABG40648.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudoalteromonas atlantica
T6c]
Length = 182
Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats.
Identities = 64/173 (36%), Positives = 101/173 (58%), Gaps = 2/173 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+N V I + + F D RG+F +T+ + L E VQDNHS S G +RGLH+Q
Sbjct: 8 LNDVLIFEPKVFGDERGFFMETFRADLFTEATGVKALVQDNHSKSRQ-GILRGLHYQLE- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR G ++D+ VD+R++S ++G +E+SA N Q+++P GFAHGF
Sbjct: 66 HTQGKLVRVTQGSVYDVVVDLRQSSSSFGQSYGIELSAQNNKQLWVPAGFAHGFYVTSET 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK +D+Y + + + W D ++ I WPL++ P++SEKD+ +
Sbjct: 126 AEFVYKCSDYYHPQSEVSILWNDPALSIQWPLVNGETPALSEKDKVGCLFSDA 178
>gi|153806362|ref|ZP_01959030.1| hypothetical protein BACCAC_00623 [Bacteroides caccae ATCC 43185]
gi|149131039|gb|EDM22245.1| hypothetical protein BACCAC_00623 [Bacteroides caccae ATCC 43185]
Length = 182
Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats.
Identities = 66/174 (37%), Positives = 103/174 (59%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V +++ + F D RG+F + + + + FVQDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPKVFFDERGYFMEAFKKEEFESHIGPVNFVQDNESKSS-FGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR I G + D+AVD+R++SPT+G +VS+ +S N Q +IP GFAHGF L
Sbjct: 66 EYSQAKLVRVIKGEVLDVAVDLRKSSPTFGQYVSVLLSEENKRQFFIPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YKV + Y+ + ++ + + DK++ I WPL +T + +S KD+
Sbjct: 126 EAIFTYKVDNKYAPQAEASILFNDKTLGIDWPLSETQM-LLSSKDREGTAFKDA 178
>gi|315178427|gb|ADT85341.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Vibrio furnissii NCTC
11218]
Length = 183
Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats.
Identities = 68/176 (38%), Positives = 108/176 (61%), Gaps = 4/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+N V +++ F D RG+F ++++ +G+ +FVQDNHS S G +RGLH+Q
Sbjct: 8 QLNDVFVIEMPVFGDERGFFMESFNQSKFNDAIGIPTIFVQDNHSKSSQ-GVLRGLHYQV 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR +AGR+FD+ +D+R++S T+G W E+S +N Q++IP GFAHGF++L
Sbjct: 67 SS-TQGKLVRVMAGRVFDVVLDLRKSSTTFGKWQGFELSGDNKKQLWIPEGFAHGFLSLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
N E +YK TD+Y+ + + W D + I WP+ + + +SEKDQ + +
Sbjct: 126 DNVEFVYKTTDYYNPNAERTIMWNDSELGIDWPI-EGLELVISEKDQAGVSFSDAE 180
>gi|313667388|ref|YP_004047672.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria lactamica ST-640]
gi|313004850|emb|CBN86276.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria lactamica 020-06]
Length = 185
Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats.
Identities = 79/181 (43%), Positives = 103/181 (56%), Gaps = 9/181 (4%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
MNI V++LK + F+D RG+F +T+ KE FVQ+NHS S G +RG
Sbjct: 1 MNIIDTALPDVKLLKPQVFKDGRGFFMETFRDGWFKENIADRTFVQENHSQS-RKGVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q Q KLVR IAG +FD+AVD+R SPT+G W +SA N Q++IP GFAHG
Sbjct: 60 LHYQTEN-TQGKLVRAIAGEVFDVAVDMREGSPTFGKWAGATLSAQNQYQLWIPEGFAHG 118
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F L EV+YK TD+Y E + + W D +I I WPL P +S KD Q
Sbjct: 119 FYVLGDTAEVVYKCTDYYKPEAEQVLIWNDPAIGIGWPL--QTAPLLSPKDLAGKTWAQA 176
Query: 176 D 176
+
Sbjct: 177 E 177
>gi|78065445|ref|YP_368214.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. 383]
gi|77966190|gb|ABB07570.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. 383]
Length = 183
Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats.
Identities = 68/175 (38%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V++++ + F D+RG+F ++++++ E FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKLIEPKVFGDARGYFYESFNAREFAEHVAPGIEFVQDNHSRSAK-GVLRGLHYQIE 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+RR+SP +G WV + +SA+N Q+++P GFAHGF+ +
Sbjct: 69 -HTQGKLVRVVEGEVFDVAVDVRRSSPNFGKWVGVTLSADNHRQLWVPPGFAHGFLVVSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + +YK TD++ EH+ + W D I I WPL P ++ KD L D
Sbjct: 128 SAQFLYKTTDYWFPEHERSIVWNDPDIGIVWPLDGE--PLLAVKDAAGMRLMDAD 180
>gi|18309599|ref|NP_561533.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens str.
13]
gi|18144276|dbj|BAB80323.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium perfringens str.
13]
Length = 160
Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats.
Identities = 76/162 (46%), Positives = 101/162 (62%), Gaps = 2/162 (1%)
Query: 22 SQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAV 81
+TYS K +E GL FVQDN S S G +RGLHFQ + Q KLVR G ++D+AV
Sbjct: 1 METYSQKAFEEAGLTMKFVQDNESKS-KKGVLRGLHFQTK-HTQGKLVRVTQGEVWDVAV 58
Query: 82 DIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGV 141
D+R+ SPT+G W + +SA N Q Y+P GFAHGF+ L YK TDFY+ E+DSG+
Sbjct: 59 DLRKGSPTFGQWEGVHLSAENKRQFYVPEGFAHGFVVLSDEAVFNYKCTDFYAPEYDSGL 118
Query: 142 AWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDG 183
W DK +++ WPL +SEKD+ L ++D PF Y+G
Sbjct: 119 LWNDKYVNVEWPLEGIEEIILSEKDKKQKTLKELDIPFIYEG 160
>gi|134294919|ref|YP_001118654.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia vietnamiensis
G4]
gi|134138076|gb|ABO53819.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia vietnamiensis
G4]
Length = 183
Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats.
Identities = 68/175 (38%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V++++ + F D+RG+F ++++++ E FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKLIEPKVFGDARGYFYESFNAREFAEHVAPGIEFVQDNHSRSAK-GVLRGLHYQIE 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+RR+SP +G WV + +SA+N Q+++P GFAHGF+ +
Sbjct: 69 -HTQGKLVRVVEGEVFDVAVDVRRSSPNFGKWVGVSLSADNHRQLWVPPGFAHGFLVVSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + +YK TD++ EH+ + W D I I WPL P ++ KD L D
Sbjct: 128 SAQFLYKTTDYWFPEHERSIVWNDPDIGIAWPLDGE--PLLAVKDAAGMRLMDAD 180
>gi|194099848|ref|YP_002002985.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae
NCCP11945]
gi|240017601|ref|ZP_04724141.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae FA6140]
gi|240081745|ref|ZP_04726288.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae FA19]
gi|240114021|ref|ZP_04728511.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae MS11]
gi|240116757|ref|ZP_04730819.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae PID18]
gi|240118978|ref|ZP_04733040.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae PID1]
gi|240124514|ref|ZP_04737470.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae PID332]
gi|240129194|ref|ZP_04741855.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae
SK-93-1035]
gi|254494779|ref|ZP_05107950.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae 1291]
gi|260439482|ref|ZP_05793298.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae DGI2]
gi|268597843|ref|ZP_06132010.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria gonorrhoeae FA19]
gi|268600087|ref|ZP_06134254.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae MS11]
gi|268602428|ref|ZP_06136595.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae PID18]
gi|268604692|ref|ZP_06138859.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae PID1]
gi|268683148|ref|ZP_06150010.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae PID332]
gi|268687577|ref|ZP_06154439.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae
SK-93-1035]
gi|291042716|ref|ZP_06568457.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae DGI2]
gi|293398258|ref|ZP_06642463.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria gonorrhoeae F62]
gi|193935138|gb|ACF30962.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae
NCCP11945]
gi|226513819|gb|EEH63164.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae 1291]
gi|268551631|gb|EEZ46650.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria gonorrhoeae FA19]
gi|268584218|gb|EEZ48894.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae MS11]
gi|268586559|gb|EEZ51235.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae PID18]
gi|268588823|gb|EEZ53499.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae PID1]
gi|268623432|gb|EEZ55832.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae PID332]
gi|268627861|gb|EEZ60261.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae
SK-93-1035]
gi|291013150|gb|EFE05116.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae DGI2]
gi|291611521|gb|EFF40591.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria gonorrhoeae F62]
Length = 185
Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats.
Identities = 76/181 (41%), Positives = 102/181 (56%), Gaps = 9/181 (4%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M+I V++LK + F D RG+F +T+ KE FVQ+NHS S G +RG
Sbjct: 1 MDIIDTALPDVKLLKPQVFTDGRGFFMETFRDGWFKENIADRTFVQENHSNSSK-GVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHG
Sbjct: 60 LHYQTEN-TQGKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNRYQLWIPEGFAHG 118
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F L EV+YK TD+Y+ E + + W D +I I WPL P +S KD Q
Sbjct: 119 FCVLGDAAEVVYKCTDYYNPETEQVLIWNDPAIGIGWPL--QTAPLLSPKDLAGKTWAQA 176
Query: 176 D 176
+
Sbjct: 177 E 177
>gi|254250563|ref|ZP_04943882.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Burkholderia
cenocepacia PC184]
gi|124879697|gb|EAY67053.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Burkholderia
cenocepacia PC184]
Length = 192
Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats.
Identities = 65/175 (37%), Positives = 99/175 (56%), Gaps = 3/175 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V +++ F D+RG+F +++ + L++ G+ FVQDN S S G +RGLH+QR
Sbjct: 9 LPGVLLIEPGVFGDARGFFVESFRASWLRDAGVDATFVQDNQSRS-RRGVLRGLHYQRVN 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV G ++D+AVDIR SP +GCW ++ + ++IP GFAHGF L
Sbjct: 68 P-QGKLVHAARGAVYDVAVDIRHGSPFFGCWFGAQLDDVSHRMLWIPPGFAHGFCVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ YK T +Y + D+GV W D I I WP +S+KD+ P L ++ +
Sbjct: 127 ADFAYKCTQYYDPDSDAGVRWDDPEIGIEWP-DPGAPYQLSDKDRRQPPLAELAA 180
>gi|313201256|ref|YP_004039914.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylovorus sp. MP688]
gi|312440572|gb|ADQ84678.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylovorus sp. MP688]
Length = 181
Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 107/166 (64%), Gaps = 5/166 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V I + + F D+RG+F ++Y+ + L GL+ FVQDNHS S G +RGLH+Q
Sbjct: 7 GLPDVLIFEPKVFGDARGFFFESYNQNTFEALTGLKRTFVQDNHSASAK-GVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR +AG + D+AVD+R+NSP++G W S +SA N Q+++P GFAHGF+ L
Sbjct: 66 RQP-QGKLVRVVAGEVLDVAVDMRKNSPSFGRWTSAILSAENRRQMWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TDFY+ EH+ + W D +++I W L T P++S KD
Sbjct: 125 EFAEFLYKTTDFYAPEHECCIRWDDPTLNIDWQL--TAPPALSAKD 168
>gi|189502419|ref|YP_001958136.1| hypothetical protein Aasi_1062 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497860|gb|ACE06407.1| hypothetical protein Aasi_1062 [Candidatus Amoebophilus asiaticus
5a2]
Length = 186
Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats.
Identities = 78/189 (41%), Positives = 109/189 (57%), Gaps = 8/189 (4%)
Query: 1 MNIN-----PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M I + I+ D RG+F + Y + L +LG+ + FVQ+N SFS GTIRG
Sbjct: 1 MQITKTPTLGLTIIGPELKTDQRGYFMECYHQEKLTQLGIHNQFVQENQSFS-KKGTIRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q PYAQAKL+R I G I+DI VD+R+ S T+G W + +SA N Q+ IP G+AHG
Sbjct: 60 LHYQLNPYAQAKLIRVIDGAIWDIIVDLRQGSTTFGQWEGIMLSAENNKQLLIPRGYAHG 119
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F + +IYK +FY E ++G+ W D + I W + P +S +DQ LP L +
Sbjct: 120 FAVMSQEATIIYKCDNFYHPEAEAGIHWLDPELAIDWKI--NAPPLLSARDQQLPCLEKA 177
Query: 176 DSPFEYDGL 184
F+Y L
Sbjct: 178 IINFDYQSL 186
>gi|158521029|ref|YP_001528899.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfococcus oleovorans
Hxd3]
gi|158509855|gb|ABW66822.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfococcus oleovorans
Hxd3]
Length = 187
Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats.
Identities = 80/176 (45%), Positives = 106/176 (60%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I VRI++ FED+RG+F +TY + G+ FVQDN SFS GT+RGLH+Q
Sbjct: 7 DITGVRIIEPDVFEDARGFFMETYQRQRYAGYGVDVDFVQDNLSFSS-AGTLRGLHYQY- 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLV I+G I+D+AVD+RR SPT+G WV +S+ N Q +IP GFAHGF+ +
Sbjct: 65 PFAQEKLVHVISGEIYDVAVDVRRGSPTFGRWVGTALSSANRRQFFIPKGFAHGFLVVSD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
V YK D+Y E D + W D ++ I W T P +S KD P L I S
Sbjct: 125 TALVTYKCGDYYHPEADRTLRWDDPALIIDW---GTKTPLLSPKDAAAPSLKDIPS 177
>gi|145588444|ref|YP_001155041.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145046850|gb|ABP33477.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 184
Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats.
Identities = 73/165 (44%), Positives = 109/165 (66%), Gaps = 3/165 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V +++ F D RGWF++++++ + GL FVQDNHSFS T+RGLH+Q
Sbjct: 10 IHDVLVIEPTVFGDERGWFTESFNAVDFADATGLTVNFVQDNHSFSRQW-TLRGLHYQLE 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR +AG +FD+AVDIR+ SPTYG WV +E+SA N Q+++P G AHGF+ L
Sbjct: 69 -KTQGKLVRVVAGSVFDVAVDIRKESPTYGKWVGIELSAQNHKQLWVPPGLAHGFLVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TD+Y + ++ + W D ++ I WPL + + P+++ KD
Sbjct: 128 TAEFLYKTTDYYHPQSEACLVWNDPTVAIAWPLPEGVNPNMNAKD 172
>gi|329848964|ref|ZP_08263992.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Asticcacaulis biprosthecum
C19]
gi|328844027|gb|EGF93596.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Asticcacaulis biprosthecum
C19]
Length = 181
Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats.
Identities = 79/176 (44%), Positives = 111/176 (63%), Gaps = 1/176 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I +++ + D RG+F + + +E FVQDN S S GTIRGLH+Q
Sbjct: 7 DIEGPALIRPKMIGDERGFFMEAFKDAWFRENVEDVSFVQDNQSLSRQVGTIRGLHYQTA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ Q KLVRC+ G IFD+AVDIRR S T+G WV ++A G Q+++P GFAH F TLE
Sbjct: 67 PFGQGKLVRCLKGSIFDVAVDIRRGSATFGKWVGATLTAEKGEQLWVPDGFAHAFCTLEP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+TEV YKVT+ YS +D+G+A+ D I I WP+ D + +S+KD+ P L+ + S
Sbjct: 127 DTEVFYKVTNPYSKPNDAGLAFDDPDIGIIWPI-DIAMAVLSDKDRLQPPLSSLIS 181
>gi|159154696|gb|ABW93681.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis]
gi|159154713|gb|ABW93697.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis]
Length = 185
Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats.
Identities = 78/181 (43%), Positives = 103/181 (56%), Gaps = 9/181 (4%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
MNI V+ILK + F+D RG+F +T+ KE FVQ+NHS S G +RG
Sbjct: 1 MNIIDTALPDVKILKPQVFKDGRGFFMETFRDGWFKENIADCSFVQENHSKSGK-GVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q Q KLVR + G +FD+AVD+R SPT+G WV +SA N Q++IP GFAHG
Sbjct: 60 LHYQTEN-TQGKLVRVVVGEVFDVAVDMREGSPTFGKWVGEILSAQNQCQLWIPEGFAHG 118
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F L EV+YK TD+Y E + + W D ++ I WPL P +S KD Q
Sbjct: 119 FCVLGDAAEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPL--QTAPLLSPKDLAGKAWAQA 176
Query: 176 D 176
+
Sbjct: 177 E 177
>gi|319942931|ref|ZP_08017214.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lautropia mirabilis ATCC
51599]
gi|319743473|gb|EFV95877.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lautropia mirabilis ATCC
51599]
Length = 190
Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats.
Identities = 76/178 (42%), Positives = 105/178 (58%), Gaps = 6/178 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V +++ + F DSRG+F ++Y+ K+ E G FVQDN S S G +RGLH+Q
Sbjct: 8 LPDVFLIEPKVFGDSRGYFYESYNQKVFDEMAGSHVEFVQDNQSRSAK-GVLRGLHYQIQ 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KL+R + G IFD+AVDIRR SPT+G +SA N +IP GFAHGF++LE
Sbjct: 67 -QAQGKLIRVMEGAIFDVAVDIRRGSPTFGKSAGFVLSAENKRMAWIPPGFAHGFLSLED 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDT---ILPSVSEKDQNLPFLNQID 176
T V+YK +DFY+ H+ + W D + I WPL VS+KD+ L + D
Sbjct: 126 GTTVLYKASDFYAPAHERSLLWSDPVLGIEWPLDQVGGLSAVLVSDKDKIGKPLAEAD 183
>gi|221194744|ref|ZP_03567801.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Atopobium rimae ATCC 49626]
gi|221185648|gb|EEE18038.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Atopobium rimae ATCC 49626]
Length = 207
Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats.
Identities = 72/182 (39%), Positives = 97/182 (53%), Gaps = 8/182 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V + + + D RG+F +TY G+ FVQDN S S G +RGLHFQ
Sbjct: 28 SIEGVMAVDVKTYGDRRGYFMETYRRDNFVAAGIDAEFVQDNQS-SSSQGVLRGLHFQIA 86
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ QAKLVR I G +FD+AVD+R SPT+G W + +S N Q ++P GFAHGF+ L
Sbjct: 87 -HPQAKLVRVIRGTVFDVAVDLRVGSPTWGKWEGIVLSEENHRQFFVPRGFAHGFLVLSD 145
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL------LDTILPSVSEKDQNLPFLNQI 175
E YK D Y + GV W D I I WP D +S+KD+ P L+ +
Sbjct: 146 EAEFCYKCDDTYHPGDEGGVMWNDPEIGIVWPAFLGEKNFDPARVILSDKDKVHPPLSAL 205
Query: 176 DS 177
+
Sbjct: 206 KN 207
>gi|149185655|ref|ZP_01863971.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Erythrobacter sp. SD-21]
gi|148830875|gb|EDL49310.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Erythrobacter sp. SD-21]
Length = 181
Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats.
Identities = 69/174 (39%), Positives = 106/174 (60%), Gaps = 3/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ +++ + F D RG+F +++++ KE+GL FVQDNHS S G +RGLH+Q
Sbjct: 7 KLADAVVIEPQVFGDERGFFLESWNNSSFKEVGLNLDFVQDNHSCSSS-GVLRGLHYQL- 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLVR + G ++D+ VD+RR+SP++G + EISA N +++P GFAHGF+TL
Sbjct: 65 PNPQGKLVRVVRGAVYDVIVDLRRSSPSFGLHEAFEISAANKRILWVPPGFAHGFLTLCD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+T +YK T +Y + + W D + I WPL + P VS+KD+N +
Sbjct: 125 DTHFLYKCTAYYEPSSEHSLVWNDPDLAIDWPLSEGA-PDVSDKDRNGITFREA 177
>gi|300776431|ref|ZP_07086289.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chryseobacterium gleum ATCC
35910]
gi|300501941|gb|EFK33081.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chryseobacterium gleum ATCC
35910]
Length = 181
Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats.
Identities = 73/173 (42%), Positives = 106/173 (61%), Gaps = 3/173 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ I++ FED RG+F + ++ K +EL G+ FVQDN S S G +RGLH Q+
Sbjct: 8 LKDCYIIEPTIFEDERGYFFEKFNEKKFEELTGMNGHFVQDNISKSS-YGVLRGLHLQKG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQAKLV C+ G ++D+AVD+R +SPT+G W +E++A N LQ+Y+P GF HGF L
Sbjct: 67 EHAQAKLVSCLEGSVWDVAVDLREDSPTFGKWFGIELTAENKLQLYVPRGFGHGFSVLST 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ YK +FYS E + V + D ++I W + D +SEKDQN P +
Sbjct: 127 HAVFSYKCDNFYSKESEGSVKFNDPDLNIDWKV-DEKDAILSEKDQNAPGFKE 178
>gi|257784799|ref|YP_003180016.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Atopobium parvulum DSM 20469]
gi|257473306|gb|ACV51425.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Atopobium parvulum DSM 20469]
Length = 201
Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats.
Identities = 71/178 (39%), Positives = 102/178 (57%), Gaps = 8/178 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V+++ + + D+RG F +TY + G+ FVQDN S+S G +RGLHFQ
Sbjct: 22 SIEGVKVVDVKLYGDARGGFMETYREENFVAGGIGASFVQDNQSYSVQ-GVLRGLHFQIE 80
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ QAKLVR I+G +FD+AVD+R SPT+G W + +SA N Q ++P GFAHGF+ L
Sbjct: 81 -HPQAKLVRVISGTVFDVAVDLREGSPTWGQWEGVILSAENRRQFFVPRGFAHGFLVLSE 139
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL------LDTILPSVSEKDQNLPFLN 173
E YK D Y + G+ W D + + WP LD +S+KD+ P L+
Sbjct: 140 TAEFCYKCDDIYHPGDEGGIMWNDPELGVEWPAFLGEKNLDPAKVILSDKDKIHPALS 197
>gi|171316144|ref|ZP_02905369.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria MEX-5]
gi|171098748|gb|EDT43542.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia ambifaria MEX-5]
Length = 190
Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats.
Identities = 69/172 (40%), Positives = 97/172 (56%), Gaps = 3/172 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V +++ F D+RG+F ++Y L++ G+ FVQDNHS S G +RGLH+Q
Sbjct: 9 LPGVLLIEPASFGDARGFFVESYRESWLRDAGVDARFVQDNHSRS-RRGVLRGLHYQFR- 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR G ++D+AVDIR SP G W + + Q++IP GFAHGF L
Sbjct: 67 HPQGKLVRVSRGAVYDVAVDIRPGSPHLGHWFGTVLDDVSHRQLWIPPGFAHGFCVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ YK T +Y D+GV W D I I WP LD + +S+KD+ P L
Sbjct: 127 ADFAYKCTAYYDPSSDAGVLWDDPDIGIEWPALD-VPFELSDKDRRQPRLRD 177
>gi|189500840|ref|YP_001960310.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium phaeobacteroides
BS1]
gi|189496281|gb|ACE04829.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium phaeobacteroides
BS1]
Length = 197
Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats.
Identities = 72/193 (37%), Positives = 110/193 (56%), Gaps = 3/193 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V + + D RG+F +++ +++E + FVQDN S S G +RGLHFQ+P
Sbjct: 7 SIPDVLEFVPKIYGDERGYFFESFRKDIVEEHVGKVDFVQDNQSKSG-YGVLRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ Q+KLVR I G + D+AVDIR SP YG +V++++ + +++P GFAHGF+ L
Sbjct: 66 PFTQSKLVRVIEGSVLDVAVDIREGSPWYGQYVAVKLDSQTNNMLWVPQGFAHGFIVLSK 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK ++Y+ E+D+G+ W D I I W + + + VSEKD PFL F Y
Sbjct: 126 EAIFSYKCDNYYAPEYDAGIKWNDPDIGIDWGIAEEQV-QVSEKDAGQPFLKDAF-HFSY 183
Query: 182 DGLPLLSLNMERD 194
+ + RD
Sbjct: 184 NDFKKEKVYHRRD 196
>gi|310780093|ref|YP_003968425.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ilyobacter polytropus DSM
2926]
gi|309749416|gb|ADO84077.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ilyobacter polytropus DSM
2926]
Length = 190
Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats.
Identities = 77/177 (43%), Positives = 106/177 (59%), Gaps = 6/177 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I+ D RG+F +TY+ + ++LG FVQDNHS S G +RGLHFQ+
Sbjct: 10 KIKDLIIIDPVVLSDQRGFFMETYNKRYFEKLGFNLEFVQDNHSKS-KKGVLRGLHFQKE 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
++Q KL+R G I+D+AVD+R+ SPT+G W L +S N YIP GFAHGF+TL+
Sbjct: 69 -HSQGKLIRVTRGSIWDVAVDLRKKSPTFGVWHGLILSQENKKLFYIPEGFAHGFLTLDD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPFLNQ 174
+TE+ YK TDFY E DSG+ W D I I WP + +SE+D + P +
Sbjct: 128 DTEIQYKCTDFYYPEFDSGINWDDPDIGIKWPFKEFGLEEENLILSERDMDQPSFKE 184
>gi|261366442|ref|ZP_05979325.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Subdoligranulum variabile DSM
15176]
gi|282571706|gb|EFB77241.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Subdoligranulum variabile DSM
15176]
Length = 188
Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats.
Identities = 69/180 (38%), Positives = 97/180 (53%), Gaps = 5/180 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++++ F D RG+F +TY G+ FVQDN S S G +RGLHFQ+
Sbjct: 10 EIPEVQVIEPTVFGDDRGYFMETYQIDDFAAAGIDKPFVQDNQSRS-TKGVLRGLHFQK- 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR G +FD+AVD R +S T+G WV + +SA N +YIP GFAHGF+ L
Sbjct: 68 NHTQGKLVRVTLGEVFDVAVDCRPHSATFGKWVGVTLSAENKKMLYIPEGFAHGFVVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
E YK TD Y + G+ + D ++++ WP S KD+ + FE+
Sbjct: 128 VAEFCYKCTDVYDPTSEGGIPYDDPTVNVQWP-DCGCEHKTSAKDKEHTPFAE--QKFEF 184
>gi|291519959|emb|CBK75180.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Butyrivibrio fibrisolvens
16/4]
Length = 196
Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats.
Identities = 69/176 (39%), Positives = 102/176 (57%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ + F D RG+F +TY+ +K GL FVQDN S S G +RGLHFQ+
Sbjct: 11 GIEGLCVITPKVFGDDRGYFMETYNENDMKAEGLDYEFVQDNQSAS-KKGVLRGLHFQK- 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR I+G ++D+AVD+R S T+G + +SA N Q IP GFAHGF+ +
Sbjct: 69 NFPQDKLVRVISGEVYDVAVDLREGSKTFGQHYGILLSAENKKQFMIPKGFAHGFLVVSD 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILP---SVSEKDQNLPFLNQ 174
E YKVTDFY + G+A+ D I++ WP+ + + +S+KD+ +
Sbjct: 129 YAEFCYKVTDFYHPNDEGGLAFDDPDINVQWPIPEGMTKEDLILSDKDKVNASFKE 184
>gi|253563860|ref|ZP_04841317.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_2_5]
gi|251947636|gb|EES87918.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_2_5]
Length = 195
Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats.
Identities = 74/186 (39%), Positives = 113/186 (60%), Gaps = 8/186 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL------GLQDVFVQDNHSFSFDCGTIRGL 56
I V +++ + F+DSRG+F +++S + E G +FVQDN S S G +RGL
Sbjct: 8 IEGVVVIEPKVFKDSRGYFVESFSQREFDEKVAIPQYGKPILFVQDNESMSS-YGVMRGL 66
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
HFQ PP+ Q+KLVRC+ G++ D+AVDIR+ SPTYG V++E++ +N Q+++P GFAHGF
Sbjct: 67 HFQLPPFTQSKLVRCVRGKVLDVAVDIRKGSPTYGHHVAVELTEDNHRQLFVPRGFAHGF 126
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
L YK +FY+ + D G++ +D+S+ I W + +SEKD L
Sbjct: 127 AVLSETAVFQYKCDNFYAPQADGGISIKDESLGIDW-CIPMDKVILSEKDTQHECLKDFT 185
Query: 177 SPFEYD 182
PF+ +
Sbjct: 186 PPFDIE 191
>gi|194337317|ref|YP_002019111.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pelodictyon
phaeoclathratiforme BU-1]
gi|194309794|gb|ACF44494.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pelodictyon
phaeoclathratiforme BU-1]
Length = 206
Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats.
Identities = 69/182 (37%), Positives = 103/182 (56%), Gaps = 3/182 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I + + F D RG+F +++ L ++ FVQDN S S G +RGLHFQ+PP
Sbjct: 19 IPDVLIFEPKVFGDDRGYFFESFRQDLFEQHVGHVAFVQDNESKSG-YGVLRGLHFQKPP 77
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q+KLVR + G + D+AVD+R SP YG VS + +++P GFAHGF+ L
Sbjct: 78 FTQSKLVRALYGSVLDVAVDLRLGSPWYGRHVSCLLDTERKRMLWVPKGFAHGFLVLSQE 137
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK ++Y+ HD+G+ W D S+ + W L ++ VS KD P + +D+ F Y+
Sbjct: 138 AVFAYKCDNYYTPSHDAGIRWNDPSLAVDWQLPPEVI-RVSGKDAEQPAFSSVDT-FAYE 195
Query: 183 GL 184
Sbjct: 196 AF 197
>gi|289662630|ref|ZP_06484211.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 185
Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats.
Identities = 70/187 (37%), Positives = 105/187 (56%), Gaps = 9/187 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ ++D RG+F ++++++ + GL FVQ N S S G +RGLH+Q P
Sbjct: 8 LPGCLLIEPAVYDDGRGYFFESWNAERFAKHGLPANFVQSNVS-SSSKGVLRGLHYQW-P 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV + G ++D+A+DIR SP +G WV+ +SA N Q +IP GFAHGF L
Sbjct: 66 RPQGKLVSVLEGEVYDVAIDIRHGSPHFGQWVAALLSAENNRQFWIPEGFAHGFAVLSER 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
Y TD Y E D+GV W D +I I WP+ + P +S KD PFL + + +
Sbjct: 126 AVFSYLCTDVYVKEADAGVRWDDAAIGIDWPISN---PLLSAKDAAAPFLADVPA----E 178
Query: 183 GLPLLSL 189
LP+ +
Sbjct: 179 RLPVYTP 185
>gi|91202740|emb|CAJ72379.1| strongly sinmilar to dTDP-4-deoxyrhamnose 3,5 epimerase [Candidatus
Kuenenia stuttgartiensis]
Length = 187
Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats.
Identities = 77/173 (44%), Positives = 109/173 (63%), Gaps = 5/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V ++K + F D RG+F +T+ E+G+ FVQDNHS+S T+RGLH+Q
Sbjct: 10 LPEVVLIKPQVFRDDRGFFLETFHKNKYAEVGISGNFVQDNHSYS-KKNTLRGLHYQLL- 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLV I+G IFD+AVDIRR SP++G W + +SA N Q+YIP GFAHGF+ L
Sbjct: 68 HPQGKLVYVISGEIFDVAVDIRRGSPSFGKWTGVHLSAENKYQLYIPEGFAHGFLVLSET 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+V+YK T+ Y+ + D G+ W D +I+ITW + P +S+KDQ L I
Sbjct: 128 ADVLYKCTEIYTPDDDYGILWSDPAINITW---QSSSPILSKKDQEYQTLKNI 177
>gi|288927846|ref|ZP_06421693.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella sp. oral taxon 317
str. F0108]
gi|288330680|gb|EFC69264.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella sp. oral taxon 317
str. F0108]
Length = 182
Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats.
Identities = 64/175 (36%), Positives = 106/175 (60%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V +++ + F D RG+F +++ + ++ + FVQDN S S G +RGLH+Q+
Sbjct: 7 ELQGVFVIQPKVFNDERGYFFESWKKEEFEKHVGKVDFVQDNESKSS-FGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+QAKLVR I GR+ D+AVD+R++SPT+G +V++E+S N Q++IP GFAHGF+ L
Sbjct: 66 EASQAKLVRVIKGRVLDVAVDLRKSSPTFGKYVAVELSDENKKQLFIPRGFAHGFLVLSP 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YKV + Y + ++ + W D+++ I WP+ + S KD L + +
Sbjct: 126 EAVFTYKVDNVYCPQSETSIRWNDETLGIEWPI-EYDKIVTSAKDLKGKSLGEAE 179
>gi|303233353|ref|ZP_07320022.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Atopobium vaginae PB189-T1-4]
gi|302480482|gb|EFL43573.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Atopobium vaginae PB189-T1-4]
Length = 205
Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats.
Identities = 70/178 (39%), Positives = 96/178 (53%), Gaps = 8/178 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V I+ T+++ D+RG+F +TY G+ FVQDN S S G +RGLHFQ
Sbjct: 22 SIRDVIIVDTKQYGDARGYFMETYKESDFAAGGISTTFVQDNQS-SSTKGVLRGLHFQIE 80
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ QAKLVR + G +FD+AVD+R S T+G W +E+SA N Q +IP GFAHGF L
Sbjct: 81 -HPQAKLVRVVRGCVFDVAVDLRAGSDTFGMWEGVELSAENHRQFFIPRGFAHGFFVLSD 139
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL------DTILPSVSEKDQNLPFLN 173
E YK D Y + G+ W D + I+WP +S+KD +
Sbjct: 140 EAEFCYKCDDVYHPGDEGGLMWNDPDLAISWPAPCGCDRFSPSQVILSDKDTHHESFA 197
>gi|283795741|ref|ZP_06344894.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium sp. M62/1]
gi|291076679|gb|EFE14043.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium sp. M62/1]
Length = 201
Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats.
Identities = 74/188 (39%), Positives = 102/188 (54%), Gaps = 17/188 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ D+RG+F +TYS + ++E G+ FVQDN S S G +RGLHFQ+
Sbjct: 12 GIEGLCVITPAVHGDARGYFMETYSQRDMEENGININFVQDNQSMSVK-GVLRGLHFQK- 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR I G +FD+AVD+R S TYG W +E++ +N Q IP GFAHGF+ L
Sbjct: 70 NFPQTKLVRVIKGSVFDVAVDLRSGSETYGKWYGIELTEDNKKQFLIPRGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL---------------LDTILPSVSEKD 166
E YK DFY + G+AW D I I WP +D + ++S+KD
Sbjct: 130 TAEFCYKCDDFYHASDEGGLAWNDPEICIVWPKVEGTYQGTASAEGYSVDGVALNLSDKD 189
Query: 167 QNLPFLNQ 174
Q L
Sbjct: 190 QKWLGLKD 197
>gi|46202496|ref|ZP_00053128.2| COG1898: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Magnetospirillum magnetotacticum MS-1]
Length = 186
Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats.
Identities = 80/178 (44%), Positives = 118/178 (66%), Gaps = 3/178 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V++L ++F D RG+F++TY++ +L E G+ VFVQDN SFS G +RGLHFQR
Sbjct: 6 LAIPEVKVLTPKRFGDDRGFFAETYNAHILAEHGITAVFVQDNQSFSRPAGVVRGLHFQR 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KL+R + G I D VDIR SP++G V++E+S+ + I++P GFAHGFMTLE
Sbjct: 66 EPYAQDKLLRVVRGAILDAVVDIRPGSPSFGQAVTVELSSEDSASIFVPKGFAHGFMTLE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL---DTILPSVSEKDQNLPFLNQI 175
+TEV YKV+ Y+ E + G+ W+D + I+WPL +++ +DQ+ L +
Sbjct: 126 PDTEVFYKVSYRYTPEAEGGIHWRDPDLAISWPLDRIGGEGAVTIAARDQSFGLLRDL 183
>gi|238026393|ref|YP_002910624.1| DTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme [Burkholderia
glumae BGR1]
gi|237875587|gb|ACR27920.1| DTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme [Burkholderia
glumae BGR1]
Length = 183
Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats.
Identities = 67/175 (38%), Positives = 106/175 (60%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V++++ + F D+RG+F ++++++ + FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKLIEPKVFGDARGFFYESFTAREFAASVCEGVEFVQDNHSRSAR-GVLRGLHYQIE 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVDIR++SP +G WV E+S N LQ+++P GFAHGF+ L
Sbjct: 69 -HAQGKLVRVVEGSVFDVAVDIRKHSPNFGKWVGAELSGENHLQMWVPPGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TD++ E + + W D I I WP+ P ++ KD Q +
Sbjct: 128 TAQFLYKTTDYWYPEFERSIIWNDPEIGIEWPI--DFEPKLAAKDAAGTRFAQAE 180
>gi|291543267|emb|CBL16376.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruminococcus sp. 18P13]
Length = 202
Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats.
Identities = 77/183 (42%), Positives = 99/183 (54%), Gaps = 17/183 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ DSRG+F +TY+ ++E GL FVQDN S S G +RGLHFQ+
Sbjct: 12 GIQGLCIIQPAVHGDSRGYFMETYNQNDMQEAGLDIAFVQDNQSCS-TKGVLRGLHFQKQ 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR I G +FD+AVD+R NS TYG W +E++A N Q IP GFAHGF+
Sbjct: 71 -FPQTKLVRVIRGSVFDVAVDLRSNSATYGKWFGVELTAENKKQFLIPKGFAHGFLVRSE 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP---------------LLDTILPSVSEKD 166
E YK DFY + G+AW D +I I W L D +SEKD
Sbjct: 130 IAEFCYKCDDFYHPGDEGGLAWNDPAIGIDWGVTGTYPGSASGSGYTLPDGTGLMLSEKD 189
Query: 167 QNL 169
Q
Sbjct: 190 QLW 192
>gi|187880625|gb|ACD37131.1| RmlC [Shigella boydii]
Length = 176
Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats.
Identities = 66/174 (37%), Positives = 104/174 (59%), Gaps = 6/174 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V+I++ + D+RG+F + Y + + L ++ FVQDN+S S +RGLHFQ+
Sbjct: 8 LDGVKIIEPVVYGDNRGFFLEVYQKQRYQNLLNIEFDFVQDNYSRSSK-NVLRGLHFQKT 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVDIR+ SP YG W+ + +S N Q ++P GFAHGF+ L
Sbjct: 67 -KPQGKLVRVVRGEVFDVAVDIRKESPNYGQWIGVLLSEMNKKQFWVPPGFAHGFVVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK T++Y E + + W D ++I WPL + P +S+KD L ++
Sbjct: 126 MADFEYKCTEYYDPEDECCLLWNDPELNIQWPLSN---PILSDKDMKGCLLKEL 176
>gi|221134347|ref|ZP_03560652.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Glaciecola sp. HTCC2999]
Length = 179
Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats.
Identities = 74/171 (43%), Positives = 104/171 (60%), Gaps = 5/171 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V I++ F D RG+F +T+ ++ +ELG+ FVQDN+S S G +RGLHFQ+
Sbjct: 8 LPGVLIIEPAIFGDDRGFFKETFQAQRYRELGISQDFVQDNYSRSS-YGVLRGLHFQQQ- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q KLV C G +FD+ VDI S T+ VS+EIS N Q+YIP G+AHGF L
Sbjct: 66 YPQGKLVSCTHGSVFDVIVDIDPGSATFTQHVSIEISGENHRQVYIPPGYAHGFCVLSDT 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ +YK TD+Y + ++G+ W D IDI WP+ I P++S KD L+
Sbjct: 126 ADFMYKCTDYYRPDDEAGILWNDPQIDIAWPI---IHPTLSPKDTVNMTLD 173
>gi|325859589|ref|ZP_08172722.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella denticola CRIS
18C-A]
gi|327314390|ref|YP_004329827.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella denticola F0289]
gi|325482869|gb|EGC85869.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella denticola CRIS
18C-A]
gi|326945833|gb|AEA21718.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella denticola F0289]
Length = 184
Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 107/168 (63%), Gaps = 3/168 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V +++ + F D+RG+F +++ + E G F+QDN S S G +RGLH+Q+
Sbjct: 7 DIEGVWVIEPKVFNDARGYFFESFKQREFDEHIGHHVEFIQDNESKSG-YGVLRGLHYQQ 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
++QAKLVR I G++ D+AVDIR++SPT+G +V +E+S +N Q +IP GFAHGF+ L
Sbjct: 66 GEFSQAKLVRVIKGKVVDVAVDIRKSSPTFGKYVMVELSEDNKRQFFIPRGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YKV + Y + ++ + W D++I I WP+ D +S+KD N
Sbjct: 126 DEAIFTYKVDNAYDPQSEASIRWDDETIGINWPV-DAKDVVLSDKDLN 172
>gi|319902158|ref|YP_004161886.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides helcogenes P
36-108]
gi|319417189|gb|ADV44300.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides helcogenes P
36-108]
Length = 182
Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats.
Identities = 66/174 (37%), Positives = 108/174 (62%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V +++ + F D+RG+F + + + + F+QDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPKVFSDARGYFMEAFKEEEFRIHVGDVHFIQDNESKSS-FGVLRGLHYQQG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR + GR+ D+AVD+RR+S T+G +VS+E+S N Q +IP GFAHGF+ L
Sbjct: 66 EYSQAKLVRVLKGRVLDVAVDLRRSSSTFGKYVSVELSEENKRQFFIPRGFAHGFLVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YKV + Y+ + ++ + + D++I I WP+ + L +S+KD++ N
Sbjct: 126 EAVFTYKVDNAYAPQAEASIRFNDETIGIEWPVSEKQL-LLSDKDEHAVSFNDA 178
>gi|284047955|ref|YP_003398294.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidaminococcus fermentans
DSM 20731]
gi|283952176|gb|ADB46979.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidaminococcus fermentans
DSM 20731]
Length = 201
Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats.
Identities = 72/189 (38%), Positives = 101/189 (53%), Gaps = 18/189 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ + I++ D+RG+F +TY+ K ++E G FVQDN S S G +RGLHFQ+
Sbjct: 11 GIDGLCIIEPAVHGDARGYFMETYNKKDMEEAGFHIDFVQDNQSMS-TKGVLRGLHFQKH 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVD+R +S TYG W +E++ N Q IP GFAHGF+ L
Sbjct: 70 -CPQCKLVRAVRGSVFDVAVDLRADSKTYGKWYGVELTDENKKQFLIPEGFAHGFLVLSD 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YKV D++ + G+AW D I I WP + D ++SEK
Sbjct: 129 EAEFCYKVNDYWHPNDEGGMAWNDPEIGIKWPQVVGEYPGSASSEGYQMEDGTPLNLSEK 188
Query: 166 DQNLPFLNQ 174
D +
Sbjct: 189 DTKWLGIRD 197
>gi|284035367|ref|YP_003385297.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Spirosoma linguale DSM 74]
gi|283814660|gb|ADB36498.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Spirosoma linguale DSM 74]
Length = 181
Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats.
Identities = 76/174 (43%), Positives = 106/174 (60%), Gaps = 5/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + L R FED RG F ++Y+ L + LGL FVQDN SFS G +RGLH Q
Sbjct: 7 SIQGLIELTPRVFEDERGHFFESYNKPLFESLGLPMDFVQDNQSFS-TKGVLRGLHMQNQ 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVR I+G++ DIAVD+R +SPT+G + + + A YIP GFAHGF+ LE
Sbjct: 66 PFAQGKLVRVISGQVLDIAVDLRPDSPTFGQYEAFLLDAKRANMAYIPEGFAHGFVALED 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK T+ Y+ +SG+ W D ++I W + + P VSEKD+ L ++
Sbjct: 126 -SVFSYKCTNVYNKAAESGIIWNDPDLNIDWGIAN---PIVSEKDKELKLFREV 175
>gi|296121781|ref|YP_003629559.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Planctomyces limnophilus DSM
3776]
gi|296014121|gb|ADG67360.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Planctomyces limnophilus DSM
3776]
Length = 181
Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats.
Identities = 76/176 (43%), Positives = 105/176 (59%), Gaps = 4/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V ++ R F DSRG+F + + + GL FVQDN S S GT+RGLHFQ
Sbjct: 8 KLPDVLKIEPRVFGDSRGFFFEVFQQERYSSSGLSQAFVQDNVSRSSR-GTLRGLHFQLV 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
QAKL++ I G IFD+AVD+R++SPT+G W +S N Q+YIP GFAHGF +
Sbjct: 67 -RPQAKLIQVIRGEIFDVAVDVRKSSPTFGQWTGYRLSDVNHHQLYIPAGFAHGFCVISE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+V+YK TD+Y +H+ + W D ++ I WPL D P +S KDQ L ++S
Sbjct: 126 TADVLYKCTDYYFPQHERCLLWNDPAVGIAWPLED--FPILSAKDQQGQTLANLES 179
>gi|71044437|gb|AAZ20757.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli]
gi|324019199|gb|EGB88418.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 117-3]
Length = 183
Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats.
Identities = 70/174 (40%), Positives = 99/174 (56%), Gaps = 5/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ + + D RG+F + Y+ ELG+ FVQDN S S +RGLHFQ+
Sbjct: 7 KIEDLVIIEPKIYNDERGYFYEFYNKNKFTELGINLDFVQDNRS-SSSQNVLRGLHFQKT 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLV G +FD+AVD+R++S T+G + S+ ++ N YIP GFAHGF L
Sbjct: 66 -KPQGKLVTVTKGEVFDVAVDLRKDSRTFGQYESVILTEENKKIFYIPPGFAHGFCVLSN 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ +YK TDFY + G+ W D S+ I WP+ P +S+KD LP L I
Sbjct: 125 KADFLYKCTDFYDPNDEGGIIWNDSSLSIEWPV---NAPILSKKDMELPTLKNI 175
>gi|2828670|gb|AAC00178.1| putative dTDP-4-dehydrorhamnose 3,5 epimerase [Serratia marcescens]
Length = 177
Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 99/175 (56%), Gaps = 6/175 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V++++ + F D RG+F +T+ +EL G+ FVQDNHS S G +RGLHFQ
Sbjct: 7 QVEGVKLIEPKVFGDQRGFFLETFQKSRYQELLGIDAEFVQDNHSRSAR-GVLRGLHFQT 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G ++D+ VDIR SPT+ V + +S N Q+++P G AHGF+ +
Sbjct: 66 A-KPQGKLVRVVRGEVYDVVVDIRPESPTFKKRVGVYLSEENKNQLWVPPGLAHGFVVVS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + YK TD+Y ++ + W D + + WP+ + P +S KD ++
Sbjct: 125 DSVDFEYKCTDYYDPSNEGCLLWNDPEVGVEWPVSE---PLLSPKDLQGKLFREL 176
>gi|325915780|ref|ZP_08178082.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas vesicatoria ATCC
35937]
gi|325538044|gb|EGD09738.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas vesicatoria ATCC
35937]
Length = 185
Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats.
Identities = 71/173 (41%), Positives = 99/173 (57%), Gaps = 5/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ F D+RG F +T++++ + GL FVQ N S S G +RGLH+Q P
Sbjct: 8 LPGCVVIEPAVFGDARGQFFETWNAERFGQHGLPTSFVQSNVSTSAK-GVLRGLHYQW-P 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV + G ++D+AVDIR SP +G W ++ +SA N Q++IP GFAHGF L
Sbjct: 66 RPQGKLVSVLEGEVYDVAVDIRAGSPHFGRWTAVLLSAENRRQVWIPEGFAHGFAVLSER 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y TD Y E D+GV W D +I I WP+ D P +S KD PFL +
Sbjct: 126 ALFSYLCTDVYVKEADAGVRWDDAAIGIDWPISD---PVLSAKDAAAPFLADV 175
>gi|301162535|emb|CBW22081.1| putative LPS biosynthesis related dTDP-4-dehydrorhamnose
3,5-epimerase [Bacteroides fragilis 638R]
Length = 195
Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats.
Identities = 74/186 (39%), Positives = 112/186 (60%), Gaps = 8/186 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL------GLQDVFVQDNHSFSFDCGTIRGL 56
I V +++ + F+DSRG+F +++S + E G +FVQDN S S G +RGL
Sbjct: 8 IEGVVVIEPKVFKDSRGYFVESFSQREFDEKVAIPQYGKPILFVQDNESMSS-YGVMRGL 66
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
HFQ PP+ Q+KLVRC+ G++ D+AVDIR+ SPTYG V++E++ +N Q ++P GFAHGF
Sbjct: 67 HFQLPPFTQSKLVRCVRGKVLDVAVDIRKGSPTYGHHVAVELTEDNHRQFFVPRGFAHGF 126
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
L YK +FY+ + D G++ +D+S+ I W + +SEKD L
Sbjct: 127 AVLSETAVFQYKCDNFYAPQADGGISIKDESLGIDW-CIPMDKVILSEKDTQHECLKDFT 185
Query: 177 SPFEYD 182
PF+ +
Sbjct: 186 PPFDIE 191
>gi|331677945|ref|ZP_08378620.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli H591]
gi|331074405|gb|EGI45725.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli H591]
Length = 186
Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats.
Identities = 74/174 (42%), Positives = 94/174 (54%), Gaps = 5/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ I++ + F D RG+F + Y K +ELG FVQDN S S +RGLHFQ+
Sbjct: 8 LKDAVIIEPKIFGDERGYFFEVYQKKRYQELGFALEFVQDNRSKS-TKNVLRGLHFQKT- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV G +FD+AVD+R S T+G S+ +S N LQ YIP GFAHGF L
Sbjct: 66 KPQGKLVSVTQGAVFDVAVDLRPESLTFGQHHSVILSEENFLQFYIPPGFAHGFCVLSDT 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YK TD+Y +SG+ W D + I WP+ P VS KD LP L I
Sbjct: 126 ASFQYKCTDYYDPTDESGLIWNDPDLGIEWPVSH---PVVSAKDCFLPSLASIK 176
>gi|254516003|ref|ZP_05128063.1| dTDP-4-dehydrorhamnose 3,5-epimerase [gamma proteobacterium NOR5-3]
gi|219675725|gb|EED32091.1| dTDP-4-dehydrorhamnose 3,5-epimerase [gamma proteobacterium NOR5-3]
Length = 182
Score = 246 bits (630), Expect = 8e-64, Method: Composition-based stats.
Identities = 68/173 (39%), Positives = 101/173 (58%), Gaps = 2/173 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V +L F D RG+F +++++++ ++ G FVQDNHS S G +RGLH+Q
Sbjct: 8 LAGVYLLTPSVFGDERGFFVESWNAEVFRDAGFDLNFVQDNHSRSAQ-GILRGLHYQT-N 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR +G +FD+AVD+RR+SPT G W + + A + +++P GFAHGF
Sbjct: 66 HTQGKLVRVTSGSVFDVAVDMRRDSPTLGQWYGVTLDAKSQQMLWVPPGFAHGFYVTSEF 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK TD Y + + +AW D SI I WPL++ PS+S KDQ
Sbjct: 126 ADFQYKCTDKYDPKSEVSIAWDDPSIGIEWPLIEGKAPSLSAKDQTGLAFADA 178
>gi|255009344|ref|ZP_05281470.1| putative LPS biosynthesis related dTDP-4-dehydrorhamnose
3,5-epimerase [Bacteroides fragilis 3_1_12]
gi|313147099|ref|ZP_07809292.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides fragilis 3_1_12]
gi|313135866|gb|EFR53226.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides fragilis 3_1_12]
Length = 182
Score = 246 bits (630), Expect = 9e-64, Method: Composition-based stats.
Identities = 66/175 (37%), Positives = 105/175 (60%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V I++ + F D RG+F + + + Q F+QDN S S GT+RGLH+Q+
Sbjct: 7 EIDGVWIIEPKVFSDPRGYFMEAFKQQEFDATIGQINFIQDNESKSS-FGTLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y QAKLVR I G + D+AVD+R++SPT+G +S+ +S +N Q++IP GFAHGF+
Sbjct: 66 DYCQAKLVRVIKGEVLDVAVDLRKSSPTFGKHISVLLSDDNKRQLFIPRGFAHGFLVKSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YKV + Y+ + ++ + + D ++ I WP+ D+ L +SEKD+ +
Sbjct: 126 EAVFTYKVDNIYAPQAEASIIYNDPALGIDWPIADSQL-VMSEKDRQAGNFRAAE 179
>gi|77164293|ref|YP_342818.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosococcus oceani ATCC
19707]
gi|254434100|ref|ZP_05047608.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosococcus oceani AFC27]
gi|76882607|gb|ABA57288.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosococcus oceani ATCC
19707]
gi|207090433|gb|EDZ67704.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosococcus oceani AFC27]
Length = 181
Score = 246 bits (630), Expect = 9e-64, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 101/176 (57%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQR 60
++ V +++ R F D RG+F ++Y+ FVQDNHS S +RGLH+Q
Sbjct: 7 SLPGVLLIEPRVFGDERGFFFESYNRAAFAAATDTQVEFVQDNHSRSLQ-HVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR +AG +FD+AVD+RR SP +G WV +SA N Q++IP GFAHGF+ L
Sbjct: 66 CQP-QGKLVRVVAGEVFDVAVDLRRRSPGFGRWVGYRLSAENRHQLWIPGGFAHGFLVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK T +Y+ E++ + W D + I WPL P +S KDQ N+ +
Sbjct: 125 EYAEFLYKTTAYYAPEYERCIRWDDSDLAIDWPLDG--RPLISAKDQAGCAFNEAE 178
>gi|85713612|ref|ZP_01044602.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Nitrobacter sp.
Nb-311A]
gi|85699516|gb|EAQ37383.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Nitrobacter sp.
Nb-311A]
Length = 184
Score = 246 bits (630), Expect = 9e-64, Method: Composition-based stats.
Identities = 69/180 (38%), Positives = 102/180 (56%), Gaps = 5/180 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ I++ R F D RG+F +TY E G+ FVQDN S S G +RGLH Q
Sbjct: 7 GVPEAVIIEPRLFGDQRGFFLETYQFPRYSEHGVACPFVQDNLSRSAR-GVLRGLHLQN- 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ Q KLV + G++ D+AVD+R SP +G V++E+S N Q+++P GFAHGF+ L
Sbjct: 65 PFPQGKLVTVLRGKVLDVAVDVRVGSPNFGRHVAVELSDENRRQLWVPRGFAHGFVVLSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ YK D YS +++ + W D +I I W + PS+S KD + P L ++ + Y
Sbjct: 125 TADFFYKCDDLYSPKNELSIRWNDPAIGIDWGVE---TPSLSAKDADAPLLAEVKNLPLY 181
>gi|265763212|ref|ZP_06091780.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_16]
gi|263255820|gb|EEZ27166.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_16]
Length = 187
Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats.
Identities = 77/181 (42%), Positives = 112/181 (61%), Gaps = 6/181 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ R F+D RG+F ++++ + Q FVQDN S S G IRGLHFQ+PP
Sbjct: 8 IEGLVIIEPRLFQDDRGYFFESFNQGEFESKVCQTTFVQDNESKSS-YGVIRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ+KLVR I G + D+AVDIR++SPT+G +S+E++ +N Q +IP GFAHGF L
Sbjct: 67 FAQSKLVRVIKGAVLDVAVDIRKDSPTFGKHISVELTGDNHRQFFIPRGFAHGFCVLSKE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW--PLLDTILPSVSEKDQNLPFLNQIDSPFE 180
YK +FY E + +AW D ++I+W PL D + +S KD+N L ++ S
Sbjct: 127 VVFQYKCDNFYHPESEGTIAWNDIDLNISWRIPLEDVV---LSRKDKNALPLKEMYSDVN 183
Query: 181 Y 181
Y
Sbjct: 184 Y 184
>gi|229028989|ref|ZP_04185088.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH1271]
gi|228732269|gb|EEL83152.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus AH1271]
Length = 168
Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats.
Identities = 81/170 (47%), Positives = 118/170 (69%), Gaps = 3/170 (1%)
Query: 10 KTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLV 69
+ R F D RG+F+++Y+ K+L+ LG+ FVQDN S+S + GTIRGLHFQ+ P AQ KL+
Sbjct: 2 EPRLFGDERGFFTESYNKKVLETLGVTYSFVQDNVSYSAEAGTIRGLHFQKNPKAQTKLI 61
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKV 129
+ + G I+D+ VD+R++SPT+ W +SA+N Q+ +P GFAHGF TL +T V+YKV
Sbjct: 62 QVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVAHTIVMYKV 121
Query: 130 TDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
++YS +HDSGV W DK + I WP+ P +S+KD+ LP L + + F
Sbjct: 122 DEYYSADHDSGVIWDDKELAIPWPVTS---PILSDKDRILPLLQEYEDSF 168
>gi|117620166|ref|YP_857409.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117561573|gb|ABK38521.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 187
Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats.
Identities = 77/182 (42%), Positives = 113/182 (62%), Gaps = 5/182 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + + + R F D RG+F ++++ KL + +G FVQDNHS S G +RGLH+Q
Sbjct: 7 ELPDILLFEPRVFSDERGFFFESFNHKLFEDAVGYPVTFVQDNHSKSSK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVRCI G IFD+AVDIR++SPT+G WV +S N Q++IP GFAHGF+T
Sbjct: 66 PPHAQGKLVRCIIGEIFDVAVDIRKSSPTFGRWVGAHLSDTNKRQLWIPEGFAHGFITRT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
EV+YK T++Y + ++ + W D+ + I W + +LP +S KD + F
Sbjct: 126 ETAEVLYKATNYYQPDFENSICWNDQQLSIKW--DNDMLPVLSRKDASAKSFMMAK-KFN 182
Query: 181 YD 182
Y+
Sbjct: 183 YN 184
>gi|254805864|ref|YP_003084085.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
alpha14]
gi|254669406|emb|CBA08595.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
alpha14]
gi|254671743|emb|CBA09562.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
alpha153]
Length = 185
Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats.
Identities = 77/181 (42%), Positives = 101/181 (55%), Gaps = 9/181 (4%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
MNI V+ILK + F D RG+F +T+ KE FVQ+NHS S G +RG
Sbjct: 1 MNIIDTALPDVKILKPQVFTDGRGFFMETFRDGWFKENIADRTFVQENHSKSGK-GVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHG
Sbjct: 60 LHYQTEN-TQGKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHG 118
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F L EV+YK TD+Y E + + W D ++ I WPL P +S KD Q
Sbjct: 119 FCVLGDAAEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPL--QTAPLLSPKDLAGKAWAQA 176
Query: 176 D 176
+
Sbjct: 177 E 177
>gi|254195983|ref|ZP_04902408.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
S13]
gi|169652727|gb|EDS85420.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
S13]
Length = 215
Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 111/175 (63%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F ++++++ EL FVQDNHS S G +RGLH+Q
Sbjct: 42 LPEVKIIEPKVFGDARGFFFESFNAREFTELVEPGIEFVQDNHSRSAR-GVLRGLHYQIQ 100
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVD+RR+SP +G WV + +SA N Q+++P GFAHGF+ L
Sbjct: 101 -HAQGKLVRVVDGEVFDVAVDVRRSSPNFGKWVGVRLSAENKRQLWVPAGFAHGFVVLSE 159
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + +YK TD++ E + + W DK I I WP+ P V+ KD +++ +
Sbjct: 160 SADFLYKTTDYWYPEFERSILWSDKQIGIEWPI--DREPLVAAKDAAGKAISEAE 212
>gi|146298097|ref|YP_001192688.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Flavobacterium johnsoniae
UW101]
gi|146152515|gb|ABQ03369.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Flavobacterium johnsoniae
UW101]
Length = 182
Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats.
Identities = 78/177 (44%), Positives = 111/177 (62%), Gaps = 2/177 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ F D RG+F ++YS ++L + FVQDN SFS GT+RGLH+Q PP
Sbjct: 8 IKDLLIVEPTIFGDERGYFFESYSKTKFEDLDIHIDFVQDNQSFS-KRGTLRGLHYQNPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVR + G I D+AVD+R++S TYG S+ +S+ N Q+ +P GFAHGF +
Sbjct: 67 FAQTKLVRVLEGEIIDVAVDLRKDSATYGKVFSVLLSSENKKQLLVPQGFAHGFSVISET 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
V+YK FY+ + G+ + D S++I W + D VSEKDQ LPFL+ +S F
Sbjct: 127 ASVMYKCDQFYNKASEGGIRFDDSSLNIDWGM-DLKDAIVSEKDQKLPFLDNCNSLF 182
>gi|150026507|ref|YP_001297333.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Flavobacterium psychrophilum
JIP02/86]
gi|149773048|emb|CAL44532.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Flavobacterium psychrophilum
JIP02/86]
Length = 183
Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats.
Identities = 70/176 (39%), Positives = 104/176 (59%), Gaps = 3/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
N+ +L+ + F D RG+F ++++ ++ +G F+QDN S+S G +RGLH+Q
Sbjct: 7 NLAGCFVLEPKIFHDDRGYFMESFNENTFEKGIGQNVHFIQDNQSYSSK-GVLRGLHYQT 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AQAKLVR + G + D+AVDIR SPTYG S+ +SA N Q+YIP GFAHGF+
Sbjct: 66 GAHAQAKLVRVLQGEVLDVAVDIRPQSPTYGQSFSILLSAENQKQLYIPRGFAHGFLVTS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YK +FY+ E + G+ + D +++I W + L +SEKD LP L
Sbjct: 126 ETATFFYKCDNFYNKESEGGLIYNDPTLNIDWNFPEKEL-IISEKDIILPTLENAK 180
>gi|148658186|ref|YP_001278391.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseiflexus sp. RS-1]
gi|148570296|gb|ABQ92441.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseiflexus sp. RS-1]
Length = 193
Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats.
Identities = 61/182 (33%), Positives = 102/182 (56%), Gaps = 6/182 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ I++ F D RG+F ++++ + G+ FVQDNHS S +RG H+Q
Sbjct: 10 LPGAIIIEPACFRDERGFFLESWNRRDFAAHGITIDFVQDNHSRSVK-HVLRGFHYQDMT 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
KLVRC G + D+ VD+R SPT+G W ++E++A N LQ+ +P GF H F+TL
Sbjct: 69 APMVKLVRCTLGSVLDVIVDLRVGSPTFGRWHAVELTAENMLQLLVPVGFGHAFLTLSDV 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ-IDSP-FE 180
E+ YK + +Y+ + + W D I + WP+ + P +S++D+ L + ++ P F
Sbjct: 129 AEIQYKCSAYYTPSAEGVITWNDPDIGVDWPVTE---PILSQRDRRGMRLAEYLERPAFR 185
Query: 181 YD 182
++
Sbjct: 186 FE 187
>gi|91794011|ref|YP_563662.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella denitrificans
OS217]
gi|91716013|gb|ABE55939.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella denitrificans
OS217]
Length = 179
Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats.
Identities = 72/170 (42%), Positives = 106/170 (62%), Gaps = 6/170 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE--LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
I V+I++ + D RG+F +T+ +E FVQDNH+ S G +RGLH+Q
Sbjct: 7 KIPDVKIIEPLVYGDERGFFMETWRQNEFEEKVAKKPCSFVQDNHTKS-KKGILRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
AQ KLVR ++G +FD+AVDIR++S TYG WV + +SA N Q+++P GFAHGF
Sbjct: 66 TEN-AQGKLVRVVSGEVFDVAVDIRKDSLTYGQWVGVYLSAENKRQLWVPEGFAHGFYVT 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
E +YK T++Y+ + + W DKS++I WPL+D P +S KD++L
Sbjct: 125 SDEAEFVYKCTEYYNPSSEVSIFWDDKSLNIHWPLID--RPLLSSKDESL 172
>gi|218699370|ref|YP_002406999.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli IAI39]
gi|253773030|ref|YP_003035861.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162030|ref|YP_003045138.1| dTDP-4-dehydrorhamnose 3,5-epimerase RmlC [Escherichia coli B str.
REL606]
gi|297520371|ref|ZP_06938757.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli OP50]
gi|300930355|ref|ZP_07145766.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 187-1]
gi|218369356|emb|CAR17114.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli IAI39]
gi|224613067|dbj|BAH24286.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli B]
gi|242377690|emb|CAQ32450.1| ybl99 [Escherichia coli BL21(DE3)]
gi|253324074|gb|ACT28676.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253973931|gb|ACT39602.1| dTDP-4-dehydrorhamnose 3,5-epimerase (RmlC) [Escherichia coli B
str. REL606]
gi|253978125|gb|ACT43795.1| dTDP-4-dehydrorhamnose 3,5-epimerase (RmlC) [Escherichia coli
BL21(DE3)]
gi|300461755|gb|EFK25248.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli MS 187-1]
Length = 181
Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats.
Identities = 73/175 (41%), Positives = 107/175 (61%), Gaps = 5/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G IRGLHFQ
Sbjct: 7 EIPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKS-TKGVIRGLHFQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PPY+QAKLVRC+ G ++D+ VDIR++S T+G WV + +SA N Q++IP GFAHGF +
Sbjct: 66 PPYSQAKLVRCVVGEVYDVVVDIRKDSKTFGKWVGVNLSAENKRQLWIPEGFAHGFEVIS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+YK ++Y+ + G+ W D+ + I W +SEKD P ++
Sbjct: 126 EVAHFLYKTNNYYNATMEKGIRWDDEYLAINW---KEKKAIISEKDMKQPSFREL 177
>gi|167837611|ref|ZP_02464494.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia thailandensis
MSMB43]
Length = 183
Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats.
Identities = 67/175 (38%), Positives = 107/175 (61%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F ++++++ E FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPKVFGDARGFFFESFNAREFAEQVEAGVEFVQDNHSRSAK-GVLRGLHYQIR 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVDIR++SP +G WV + +SA N Q+++P GFAHGF+ L
Sbjct: 69 -HAQGKLVRVVEGEVFDVAVDIRKSSPNFGKWVGVALSAENHRQLWVPPGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + +YK TD++ E + + W D +I I WP+ P ++ KD +
Sbjct: 128 SAQFLYKTTDYWYPEFERSIVWNDPTIGIEWPI--DFEPLLAVKDAAGKRFVDAE 180
>gi|29726017|gb|AAO88944.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]
Length = 186
Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats.
Identities = 67/179 (37%), Positives = 108/179 (60%), Gaps = 7/179 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGL---QDVFVQDNHSFSFDCGTIRGLHF 58
I V+I++ FED+RG+F +T+ +++ + FVQDNHS S G +RGLH+
Sbjct: 7 KIPDVKIIEPIVFEDARGFFMETWQQNKFEKMVGSDKEITFVQDNHSSSIK-GVLRGLHY 65
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
Q+ Q KLVR G++FD+AVD+R++S T+G WV + +S +N +++P GFAHGF
Sbjct: 66 QKIN-TQGKLVRVTKGKVFDVAVDVRKDSVTFGEWVGVILSEDNRRMLWVPEGFAHGFYV 124
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
L E +YK TD+Y+ E + ++W D+ I+I WP+ + +S+ D+ L +
Sbjct: 125 LSKEAEFLYKCTDYYNAESNVTISWNDEDINIDWPIEGQV--VLSDTDREGISLEDARN 181
>gi|285808321|gb|ADC35851.1| dTDP-4-dehydrorhamnose 35-epimerase [uncultured bacterium 92]
Length = 180
Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats.
Identities = 73/175 (41%), Positives = 106/175 (60%), Gaps = 3/175 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+++ + +++ + FED RG+F +TY S G+ Q+NHS S GT+RGLH QR
Sbjct: 8 LDLPDIILIEPKVFEDPRGFFMETYKSSDFTAAGITAPLKQENHSRSIR-GTLRGLHAQR 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KL+ + G IFD+A+DIRR SPT+G W + +S N Q++IP G+AHGF L
Sbjct: 67 APKAQGKLISVLEGEIFDVALDIRRESPTFGRWTTATLSRANRYQLFIPPGYAHGFAVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
EV+YK T+ Y+ E + GV W D + I WPL P +S +D++ P L +
Sbjct: 127 DVAEVVYKTTEEYAPELEYGVRWDDPELAIPWPLRGE--PILSSRDRSWPRLRDL 179
>gi|323152428|gb|EFZ38716.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli EPECa14]
Length = 152
Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats.
Identities = 69/145 (47%), Positives = 97/145 (66%), Gaps = 2/145 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G +RGLH+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKSSK-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLVRC+ G +FD+AVDIR++SPT+G WV + +SA N Q++IP GFAHGF+ L
Sbjct: 66 EPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVNLSAENKRQLWIPEGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQD 145
E +YK T++Y E + + W D
Sbjct: 126 EIAEFVYKTTNYYHPESEGCIKWDD 150
>gi|312131997|ref|YP_003999337.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Leadbetterella byssophila DSM
17132]
gi|311908543|gb|ADQ18984.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leadbetterella byssophila DSM
17132]
Length = 177
Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats.
Identities = 74/175 (42%), Positives = 103/175 (58%), Gaps = 5/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V + R FED RG+F ++Y+ +L K G+ + F+QDN SFS G IRGLHFQR
Sbjct: 7 KLPGVFEIIPRIFEDDRGYFYESYNIELFKANGIPEEFLQDNQSFS-KKGVIRGLHFQRA 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KLVR I G + D+ VDIR SPT+G + S ++ N +Y+P GFAHGF TLE
Sbjct: 66 PFAQGKLVRVIKGAVLDVVVDIRPESPTFGQYESFLLTEENKKMVYLPEGFAHGFSTLED 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YK T+ Y + G+ + D ++I W + + P VS+KD LP +
Sbjct: 126 -AIFSYKCTNVYHKASEGGIIYNDPDLNIDWQVSN---PVVSDKDLELPSWKEFK 176
>gi|313124556|ref|YP_004034815.1| dtdp-4-keto-6-deoxy-d-glucose 3,5-epimerase rmlc [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
gi|312281119|gb|ADQ61838.1| Putative dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC
[Lactobacillus delbrueckii subsp. bulgaricus ND02]
Length = 202
Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats.
Identities = 74/189 (39%), Positives = 100/189 (52%), Gaps = 18/189 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ D RG+F +TY+ +KE G FVQDN S S G +RGLHFQ+
Sbjct: 12 GIEGLAVITPAVHGDDRGYFMETYNENDMKEAGFDINFVQDNQS-SSTKGVLRGLHFQKH 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R +S TYG W +E++A N Q IP GFAHGF+ L
Sbjct: 71 -FPQCKLVRAVRGDVFDVAVDLRSDSKTYGKWYGVELTAENKKQFLIPEGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YKV DF+ + G+AW D I I WP L D ++S++
Sbjct: 130 VAEFCYKVNDFWHPNDEGGMAWNDPEIGIEWPKLVGEYPGSADASGYSLEDGTKLTLSDR 189
Query: 166 DQNLPFLNQ 174
DQ L
Sbjct: 190 DQKWAGLKD 198
>gi|298481049|ref|ZP_06999243.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D22]
gi|298272623|gb|EFI14190.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. D22]
Length = 193
Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats.
Identities = 75/181 (41%), Positives = 112/181 (61%), Gaps = 2/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V +++ + F+D+RG+F +++S + ++ + FVQDN S S G +RG HFQ P
Sbjct: 7 KIDGVVVIEPKVFKDTRGYFLESFSLREFEKKVRKISFVQDNESMSS-YGVMRGFHFQFP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY Q+KLVRC+ GR+ D+AVDIR+ S TYG V++E+S N Q ++P GFAHGF L
Sbjct: 66 PYTQSKLVRCVKGRVLDVAVDIRKGSSTYGQHVAVELSEENHHQFFVPRGFAHGFAVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +FY+ + D G++ +D+ + I W + + +SEKD FL DSPF
Sbjct: 126 IAVFQYKCDNFYNPQADGGISIKDEGLGINWMIPSESI-ILSEKDTRHTFLKNFDSPFSI 184
Query: 182 D 182
D
Sbjct: 185 D 185
>gi|332529613|ref|ZP_08405569.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Hylemonella gracilis ATCC
19624]
gi|332040963|gb|EGI77333.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Hylemonella gracilis ATCC
19624]
Length = 182
Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats.
Identities = 70/172 (40%), Positives = 105/172 (61%), Gaps = 4/172 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V IL+ + F DSRG+F ++++ K+ E+ G FVQD HS S G +RGLH+Q
Sbjct: 8 LPGVLILEPQVFGDSRGFFFESFNQKVFVEITGANFNFVQDGHSKSGK-GVLRGLHYQIQ 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q K+VR G +FD+AVDIR++S +G WV +E+S N Q++IP GFAHGF
Sbjct: 67 -QTQGKIVRVTRGSVFDVAVDIRKSSANFGKWVGVELSEENRRQLWIPPGFAHGFAVTSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ +V+YK+T+ Y+ +H+ + W D +I I WP+ + +S KDQ L
Sbjct: 126 SADVLYKMTENYAPQHERCILWNDPAIGIRWPVQ-GLEVQLSAKDQQGVPLA 176
>gi|239997866|ref|ZP_04717790.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae 35/02]
gi|240015153|ref|ZP_04722066.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae DGI18]
gi|240122224|ref|ZP_04735186.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae
PID24-1]
gi|240124613|ref|ZP_04737499.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae
SK-92-679]
gi|268593712|ref|ZP_06127879.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria gonorrhoeae 35/02]
gi|268683180|ref|ZP_06150042.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae
SK-92-679]
gi|268547101|gb|EEZ42519.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria gonorrhoeae 35/02]
gi|268623464|gb|EEZ55864.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae
SK-92-679]
gi|317165316|gb|ADV08857.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 185
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats.
Identities = 76/181 (41%), Positives = 102/181 (56%), Gaps = 9/181 (4%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M+I V++LK + F D RG+F +T+ KE FVQ+NHS S G +RG
Sbjct: 1 MDIIDTALPDVKLLKPQVFTDGRGFFMETFRDGWFKENIADRTFVQENHSNSSK-GVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHG
Sbjct: 60 LHYQTEN-TQGKLVRIVVGEVFDVAVDMREGSPTFGKWAGATLSAQNRYQLWIPEGFAHG 118
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F L EV+YK TD+Y+ E + + W D +I I WPL P +S KD Q
Sbjct: 119 FCVLGDAAEVVYKCTDYYNPETEQVLIWNDPAIGIGWPL--QTAPLLSPKDLAGKTWAQA 176
Query: 176 D 176
+
Sbjct: 177 E 177
>gi|312797097|ref|YP_004030019.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia rhizoxinica HKI
454]
gi|303399367|emb|CBK52867.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia rhizoxinica HKI
454]
gi|312168872|emb|CBW75875.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia rhizoxinica HKI
454]
Length = 183
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 112/176 (63%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQR 60
++ V++++ + F+D+RG+ ++++++ L VFVQDNHS S G +RGLH+Q
Sbjct: 9 SLPDVKLIEPQVFDDARGFLFESFNARDFARLVDANAVFVQDNHSRSAK-GVLRGLHYQI 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AQ KLVR + G +FD+AVDIRR+SP +G WV + +SA N Q+++P GFAHGF+TL
Sbjct: 68 E-HAQGKLVRVVHGEVFDVAVDIRRSSPHFGQWVGVYLSAANRRQLWVPPGFAHGFLTLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD++ E + + W D + I WPL P V+ KD L++ +
Sbjct: 127 DSAEFLYKTTDYWFPEFERSILWNDPELGIEWPLQGD--PVVAAKDAGGKQLSEAE 180
>gi|21230098|ref|NP_636015.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66769911|ref|YP_244673.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas campestris pv.
campestris str. 8004]
gi|188993127|ref|YP_001905137.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas campestris pv.
campestris str. B100]
gi|14090389|gb|AAK53465.1|AF204145_5 dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas campestris pv.
campestris]
gi|21111625|gb|AAM39939.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66575243|gb|AAY50653.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas campestris pv.
campestris str. 8004]
gi|167734887|emb|CAP53099.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas campestris pv.
campestris]
Length = 185
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 101/173 (58%), Gaps = 5/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ F D RG F +T++++ + GL FVQ N S S G +RGLH+Q P
Sbjct: 8 LPGCVVIEPAVFGDERGQFFETWNAERFGQHGLPTSFVQSNVSTSAR-GVLRGLHYQW-P 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV + G ++D+AVDIR SP +G W ++ +SA N Q++IP GFAHGF L
Sbjct: 66 RPQGKLVSVLEGEVYDVAVDIRAGSPHFGRWTAVLLSAENRRQVWIPEGFAHGFAVLSEK 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y TD Y E D+GV W D +I I WP+ D PS+S KD PFL+++
Sbjct: 126 ALFSYLCTDVYVKEADAGVRWDDAAIGIDWPVSD---PSLSAKDAKAPFLDEV 175
>gi|325685364|gb|EGD27471.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
Length = 202
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats.
Identities = 74/189 (39%), Positives = 100/189 (52%), Gaps = 18/189 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ D RG+F +TY+ +KE G FVQDN S S G +RGLHFQ+
Sbjct: 12 GIEGLAVITPAVHGDDRGYFMETYNENDMKEAGFDINFVQDNQS-SSTKGVLRGLHFQKH 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R +S TYG W +E++A N Q IP GFAHGF+ L
Sbjct: 71 -FPQCKLVRAVRGDVFDVAVDLRSDSKTYGKWYGVELTAENKKQFLIPEGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YKV DF+ + G+AW D I I WP L D ++S++
Sbjct: 130 VAEFCYKVNDFWHPNDEGGMAWNDPEIGIEWPQLVGEYPGSADASGYALEDGTKLTLSDR 189
Query: 166 DQNLPFLNQ 174
DQ L
Sbjct: 190 DQKWLGLKD 198
>gi|261822264|ref|YP_003260370.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pectobacterium wasabiae
WPP163]
gi|261606277|gb|ACX88763.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pectobacterium wasabiae
WPP163]
Length = 178
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats.
Identities = 66/172 (38%), Positives = 100/172 (58%), Gaps = 6/172 (3%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQRPPY 63
+I++ + F D+RG+F +T+ K +++ + FVQDNHS S G +RGLHFQ+
Sbjct: 10 GAKIIQPKVFGDARGFFLETFEKKRYQKMLDIDLDFVQDNHSRSSK-GVLRGLHFQKTNP 68
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
Q KLVR + G +FD+ VDIR++SPTYG W + +S N Q ++P G AHGF+ L
Sbjct: 69 -QGKLVRVVRGEVFDVVVDIRQDSPTYGKWCGVTLSEENKTQFWLPPGLAHGFVVLSDIV 127
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK TD+Y + + W D + I WP+ + P +SEKD+ +
Sbjct: 128 DFEYKCTDYYDPSDEGCLLWNDPKVGIKWPISE---PLLSEKDKLGKLFKDV 176
>gi|293407678|gb|ADE44332.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia
pseudomallei]
gi|312100406|gb|ADQ27802.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei]
gi|312100442|gb|ADQ27836.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei]
gi|312100472|gb|ADQ27858.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei]
Length = 183
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats.
Identities = 68/175 (38%), Positives = 109/175 (62%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F ++++++ E F+QDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPKVFGDARGFFFESFNAREFAEQVEAGVEFIQDNHSRSAK-GVLRGLHYQIR 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVDIRR+SP + WV + +SA+N Q+++P GFAHGF+ L
Sbjct: 69 -HAQGKLVRVVEGEVFDVAVDIRRSSPNFDKWVGVVLSADNHRQLWVPPGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + +YK TD++ E + + W D +I I WP+ P ++ KD LN +
Sbjct: 128 SAQFLYKTTDYWYPEFERSIVWNDPTIGIEWPI--DFEPLLAAKDAAGAKLNDAE 180
>gi|163851815|ref|YP_001639858.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
PA1]
gi|163663420|gb|ABY30787.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
PA1]
Length = 183
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats.
Identities = 82/178 (46%), Positives = 111/178 (62%), Gaps = 1/178 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+ + ++ D RGWFS+ Y + LL E G+ + FVQDN SFS GTIRGLHFQ
Sbjct: 7 EIPAVKRVIPKRHGDDRGWFSEVYRADLLAERGIANAFVQDNQSFSAPAGTIRGLHFQVA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKL+R +AG I D+AVD+R NS +YG V++ + A G Q+++P GFAHGF TLE
Sbjct: 67 PNAQAKLIRVLAGAILDVAVDLRSNSSSYGRHVAVRLDATGGEQLFVPAGFAHGFCTLEP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
++ V YKV +YS D + W D +I I WP+ + +S KD+ P L + F
Sbjct: 127 DSMVAYKVDAYYSPADDRNLRWNDPAIGIAWPVAE-ADAILSGKDKAAPLLADLGRVF 183
>gi|42518976|ref|NP_964906.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus johnsonii NCC
533]
gi|41583263|gb|AAS08872.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus johnsonii NCC
533]
gi|120400366|gb|ABM21421.1| sugar biosynthesis protein [Lactobacillus johnsonii]
Length = 202
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats.
Identities = 72/189 (38%), Positives = 100/189 (52%), Gaps = 18/189 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ D RG+F +T++ + + + G FVQDN S S G +RGLHFQ+
Sbjct: 12 GIEGLAVITPTVHGDDRGYFMETFNQRDMMDAGFSINFVQDNQS-SSTKGVLRGLHFQKK 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G +FD+AVD+R +S TYG W +E++A N Q IP GFAHGF+ L
Sbjct: 71 -YPQIKLVRAVRGSVFDVAVDLRSDSKTYGKWYGVELTAENKKQFLIPQGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YKV DF+ + G+AW D I I WP L D ++S++
Sbjct: 130 EAEFCYKVNDFWHPNDEGGMAWNDPEIGIEWPHLKGDYPGSPDASGYTLDDGTKLTLSDR 189
Query: 166 DQNLPFLNQ 174
DQ L
Sbjct: 190 DQEWKGLKD 198
>gi|46445758|ref|YP_007123.1| dTDP-4-dehydrorhamnose 3,5-epimerase, rfbC [Candidatus
Protochlamydia amoebophila UWE25]
gi|46399399|emb|CAF22848.1| probable dTDP-4-dehydrorhamnose 3,5-epimerase, rfbC [Candidatus
Protochlamydia amoebophila UWE25]
Length = 184
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats.
Identities = 71/174 (40%), Positives = 108/174 (62%), Gaps = 5/174 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + ++++K F+D+RG+F +++ L +++G+Q+ F+QDNHSFS G IRG+HFQ
Sbjct: 6 LQLKGLKLVKPNVFKDNRGFFLESFQQPLYQKMGIQETFLQDNHSFS-QKGCIRGMHFQS 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P QAKLVR G+I+D+AVDIR SPT+G W + + Q++IP GFAHGF L
Sbjct: 65 FP-GQAKLVRVAVGKIYDVAVDIRPESPTFGQWEGIILDDKKHHQLFIPVGFAHGFCVLS 123
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
V+YKV+ Y ++ G W D ++I WP+ P VSE+D+ P +
Sbjct: 124 QEAHVMYKVSTPYDPLYEKGFRWNDSQLNIQWPIE---QPIVSERDKQSPSFRE 174
>gi|299137000|ref|ZP_07030183.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidobacterium sp. MP5ACTX8]
gi|298601515|gb|EFI57670.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidobacterium sp. MP5ACTX8]
Length = 192
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats.
Identities = 74/181 (40%), Positives = 107/181 (59%), Gaps = 2/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V++++ +K D RGWFS+ +++K GL D FVQDN SFS G +RGLH+Q
Sbjct: 12 SLRDVKLVRPKKHGDERGWFSEVFNAKSFSAAGLPDRFVQDNQSFS-RRGVLRGLHYQLG 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR ++G I+D+AVD+R NSP +G W ++ ++IP GF HGF+ L
Sbjct: 71 EQ-QGKLVRALSGHIWDVAVDLRPNSPDFGKWAGFDLKGEEIEFLWIPEGFGHGFVVLSE 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
V+YK T+FY + V W D +++ITWPL +PSVS KD L + + P Y
Sbjct: 130 TANVLYKTTNFYYPAGERCVRWDDPTLNITWPLDGIGVPSVSAKDAIGNLLAEAELPPPY 189
Query: 182 D 182
Sbjct: 190 Q 190
>gi|53720294|ref|YP_109280.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Burkholderia pseudomallei
K96243]
gi|53725972|ref|YP_103575.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei ATCC
23344]
gi|124385294|ref|YP_001028707.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei NCTC
10229]
gi|126452584|ref|YP_001067377.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
1106a]
gi|134280426|ref|ZP_01767137.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
305]
gi|167000834|ref|ZP_02266639.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei PRL-20]
gi|167720870|ref|ZP_02404106.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
DM98]
gi|167739852|ref|ZP_02412626.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei 14]
gi|167817074|ref|ZP_02448754.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei 91]
gi|167825484|ref|ZP_02456955.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei 9]
gi|167846974|ref|ZP_02472482.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
B7210]
gi|167895556|ref|ZP_02482958.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
7894]
gi|167912205|ref|ZP_02499296.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
112]
gi|167920166|ref|ZP_02507257.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
BCC215]
gi|226193862|ref|ZP_03789464.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
Pakistan 9]
gi|237813506|ref|YP_002897957.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
MSHR346]
gi|238560979|ref|ZP_04609372.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei GB8 horse
4]
gi|242316360|ref|ZP_04815376.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
1106b]
gi|254175405|ref|ZP_04882065.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei ATCC
10399]
gi|254180916|ref|ZP_04887514.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
1655]
gi|254191761|ref|ZP_04898264.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
Pasteur 52237]
gi|254202265|ref|ZP_04908628.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei FMH]
gi|254207598|ref|ZP_04913948.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei JHU]
gi|254261524|ref|ZP_04952578.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
1710a]
gi|254298971|ref|ZP_04966421.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
406e]
gi|254356500|ref|ZP_04972776.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei
2002721280]
gi|262193266|ref|YP_001081387.2| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei NCTC
10247]
gi|284159929|ref|YP_001060114.2| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
668]
gi|3135676|gb|AAD05456.1| putative dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase [Burkholderia
pseudomallei 1026b]
gi|13518095|gb|AAK27393.1| putative dTDP-4-keto-6-deoxy-D-glucose [Burkholderia mallei]
gi|52210708|emb|CAH36692.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Burkholderia pseudomallei
K96243]
gi|52429395|gb|AAU49988.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei ATCC
23344]
gi|124293314|gb|ABN02583.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei NCTC
10229]
gi|126226226|gb|ABN89766.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
1106a]
gi|134248433|gb|EBA48516.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
305]
gi|147746512|gb|EDK53589.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei FMH]
gi|147751492|gb|EDK58559.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei JHU]
gi|148025497|gb|EDK83651.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei
2002721280]
gi|157809171|gb|EDO86341.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
406e]
gi|157939432|gb|EDO95102.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
Pasteur 52237]
gi|160696449|gb|EDP86419.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei ATCC
10399]
gi|184211455|gb|EDU08498.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
1655]
gi|225934167|gb|EEH30152.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
Pakistan 9]
gi|237506837|gb|ACQ99155.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
MSHR346]
gi|238525295|gb|EEP88723.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei GB8 horse
4]
gi|242139599|gb|EES26001.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
1106b]
gi|243063264|gb|EES45450.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei PRL-20]
gi|254220213|gb|EET09597.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
1710a]
gi|261835086|gb|ABO07153.2| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei NCTC
10247]
gi|283775101|gb|ABN83873.2| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia pseudomallei
668]
Length = 183
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 111/175 (63%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F ++++++ EL FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPKVFGDARGFFFESFNAREFTELVEPGIEFVQDNHSRSAR-GVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVD+RR+SP +G WV + +SA N Q+++P GFAHGF+ L
Sbjct: 69 -HAQGKLVRVVDGEVFDVAVDVRRSSPNFGKWVGVRLSAENKRQLWVPAGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + +YK TD++ E + + W DK I I WP+ P V+ KD +++ +
Sbjct: 128 SADFLYKTTDYWYPEFERSILWSDKQIGIEWPI--DREPLVAAKDAAGKAISEAE 180
>gi|253999154|ref|YP_003051217.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylovorus sp. SIP3-4]
gi|253985833|gb|ACT50690.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylovorus sp. SIP3-4]
Length = 181
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats.
Identities = 73/166 (43%), Positives = 106/166 (63%), Gaps = 5/166 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V I + + F D+RG+F ++Y+ + L GL FVQDNHS S G +RGLH+Q
Sbjct: 7 GLPDVLIFEPKVFGDARGFFFESYNQNTFQALTGLSPNFVQDNHSASAK-GVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR +AG + D+AVD+R++SP++G W S +SA N Q+++P GFAHGF+ L
Sbjct: 66 RQP-QGKLVRVVAGEVLDVAVDMRKSSPSFGRWTSAILSAENRRQMWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E +YK TDFY+ EH+ + W D +++I W L T P++S KD
Sbjct: 125 EFAEFLYKTTDFYAPEHECCIRWDDPTLNIDWQL--TAPPALSAKD 168
>gi|256375866|ref|YP_003099526.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinosynnema mirum DSM
43827]
gi|255920169|gb|ACU35680.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinosynnema mirum DSM
43827]
Length = 200
Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats.
Identities = 77/172 (44%), Positives = 104/172 (60%), Gaps = 4/172 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ VR+++ FED RG+F ++YS + ++ GL FVQDNHS S G +RGLHFQ
Sbjct: 19 EIDGVRVVQPEWFEDERGFFFESYSKRRWEQHGLHLDFVQDNHSRSSR-GVLRGLHFQTG 77
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q +LVRC G I+D+ VDIR SPT+G W +E+SA N Q+ + GFAHGF L
Sbjct: 78 LAPQHRLVRCTVGAIWDVVVDIRVGSPTFGKWFGIELSATNRTQLLMGPGFAHGFAVLSD 137
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
EV YK T F++ E + +AW D + I WP+ D P++S KD P L
Sbjct: 138 VAEVQYKTTGFHTPEAEGLLAWDDPDVGIPWPIED---PTLSAKDSANPSLA 186
>gi|1073093|pir||D49906 rfbD homolog - Xanthomonas campestris pv. campestris
Length = 183
Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 101/173 (58%), Gaps = 5/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ F D RG F +T++++ + GL FVQ N S S G +RGLH+Q P
Sbjct: 6 LPGCVVIEPAVFGDERGQFFETWNAERFGQHGLPTSFVQSNVSTSAR-GVLRGLHYQW-P 63
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV + G ++D+AVDIR SP +G W ++ +SA N Q++IP GFAHGF L
Sbjct: 64 RPQGKLVSVLEGEVYDVAVDIRAGSPHFGRWTAVLLSAENRRQVWIPEGFAHGFAVLSEK 123
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y TD Y E D+GV W D +I I WP+ D PS+S KD PFL+++
Sbjct: 124 ALFSYLCTDVYVKEADAGVRWDDAAIGIDWPVSD---PSLSAKDAKAPFLDEV 173
>gi|237739562|ref|ZP_04570043.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 2_1_31]
gi|229423170|gb|EEO38217.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 2_1_31]
Length = 187
Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats.
Identities = 74/177 (41%), Positives = 111/177 (62%), Gaps = 5/177 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + +++ + FEDSRG+F ++Y+ KELG+ +VFVQDN S S G +RGLHFQR
Sbjct: 7 KIKNLLLIEPKIFEDSRGFFMESYNYNTFKELGIDNVFVQDNISKSSK-GVLRGLHFQRD 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
YAQAKLV + G + DI VD+R++S T+G + ++E++ N ++IP GFAHGF+TLE
Sbjct: 66 EYAQAKLVYVLRGAVLDITVDLRKDSETFGRYEAVELNDKNKRMLFIPRGFAHGFLTLED 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPFLNQ 174
NTE +YK +FY+ + + G+ W D ++ W L +SEKD+ +
Sbjct: 126 NTEFVYKCDNFYNPKSEVGIIWNDTDLNTDWNLDKYNIKEEELIISEKDKKNITFKE 182
>gi|32170823|gb|AAP57699.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Sphingomonas elodea]
Length = 188
Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats.
Identities = 83/182 (45%), Positives = 113/182 (62%), Gaps = 1/182 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V KF D RG+FS+ + L G++ +VQDN SFS GTIRGLH Q P
Sbjct: 8 ELSGVIEFTPPKFGDHRGFFSEVFKQSQLDAEGVEARWVQDNQSFSAAAGTIRGLHLQAP 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQAKLVR + G I+D+AVDIRR SPTYG WV +E+SA Q+ +P G+AHGFMTL
Sbjct: 68 AFAQAKLVRVLPGAIYDVAVDIRRGSPTYGRWVGVELSAEKWNQLLVPAGYAHGFMTLVP 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ E++YKV+ YS + + + W D + ITWP + P +SEKD + ++PF Y
Sbjct: 128 DCEILYKVSAKYSKDSEMAIRWDDPDLAITWP-DIGVEPVLSEKDAVATPFVEFNTPFFY 186
Query: 182 DG 183
G
Sbjct: 187 QG 188
>gi|292492257|ref|YP_003527696.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosococcus halophilus Nc4]
gi|291580852|gb|ADE15309.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosococcus halophilus Nc4]
Length = 181
Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 103/176 (58%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V +++ R F D RG+F ++Y+ +Q FVQDNHS S +RGLH+Q
Sbjct: 7 KLPEVLLIEPRVFGDKRGFFFESYNKIAFAAATDIQAEFVQDNHSCSAR-HVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR +AG +FD+AVD+RR+S ++G WV +SA N Q+++P GFAHGF+ L
Sbjct: 66 RQP-QGKLVRVVAGEVFDVAVDLRRSSSSFGHWVGCHLSAENKHQLWVPEGFAHGFLVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK TD+Y+ E++ + W D + I WPL P VS KDQ + +
Sbjct: 125 EYAEFLYKTTDYYAPEYERCIRWDDPELAIDWPLEKA--PLVSTKDQAGVAFKEAE 178
>gi|59710775|ref|YP_203551.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Vibrio fischeri ES114]
gi|59478876|gb|AAW84663.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Vibrio fischeri ES114]
Length = 185
Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats.
Identities = 75/177 (42%), Positives = 111/177 (62%), Gaps = 6/177 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I+K + F D RG+F +T+ S+ KE G+++ FVQDN S S +RGLHFQ+
Sbjct: 7 KLADCIIIKPKVFGDERGFFLETFHSQRYKEVAGIKEQFVQDNRSQSSK-NVLRGLHFQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLV I+G +FD+AVD+R S T+G + ++ +S +N LQ Y+P GFAHGF L
Sbjct: 66 T-KPQGKLVTVISGEVFDVAVDLRPESETFGQYEAVVLSGDNKLQFYVPPGFAHGFCVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ + YK TD+Y + +SG+ W D I+I WPL P +SEKD+ P L++I++
Sbjct: 125 ESADFQYKCTDYYDPDDESGLLWSDPIINIQWPLK---TPLLSEKDKIQPLLSEIEA 178
>gi|163853094|ref|YP_001641137.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
PA1]
gi|163664699|gb|ABY32066.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
PA1]
Length = 183
Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats.
Identities = 81/178 (45%), Positives = 113/178 (63%), Gaps = 1/178 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V+ + ++ D RGWFS+ Y + +L E G+ + F+QDN SFS GTIRGLHFQ
Sbjct: 7 EISAVKRVIPKRHGDDRGWFSEIYRADILSEHGIANAFLQDNQSFSAPAGTIRGLHFQVA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKL+R +AG I D+AVD+R +SP+YG V++ + A G Q+++P GFAHGF TLE
Sbjct: 67 PNAQAKLIRVLAGAILDVAVDLRSDSPSYGRHVAVRLDATGGEQLFVPAGFAHGFCTLEP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+T V YKV +YS D + W D +I I WP+ + +S KD+ P L + F
Sbjct: 127 DTMVAYKVDAYYSPADDRNLRWNDPAIGIAWPVAE-ADAILSGKDKAAPLLADLGRVF 183
>gi|224826608|ref|ZP_03699709.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lutiella nitroferrum 2002]
gi|224601209|gb|EEG07391.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lutiella nitroferrum 2002]
Length = 180
Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats.
Identities = 66/174 (37%), Positives = 103/174 (59%), Gaps = 5/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+N + +L+ F D RG F +T++++ L G + FVQDN S S +RGLH+Q
Sbjct: 8 LNGLLLLEPVVFADERGEFCETFNARRFAALIGREVCFVQDNRSCS-RPNVLRGLHYQHA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLV+ G ++D+AVD+RR SP++G W + +SA N Q++IP GFAHGF+ L+
Sbjct: 67 -HPQGKLVQVTQGAVWDVAVDLRRASPSFGQWYGVTLSAENRRQLWIPEGFAHGFLALQD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YKV+D++ + + W D ++ I WPL T P +S+KD+ +
Sbjct: 126 GAEFCYKVSDYWHAGDEYCIRWDDPALGIDWPL--TQPPVLSDKDRQGLSFAEA 177
>gi|148252643|ref|YP_001237228.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bradyrhizobium sp. BTAi1]
gi|146404816|gb|ABQ33322.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bradyrhizobium sp. BTAi1]
Length = 191
Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats.
Identities = 81/179 (45%), Positives = 113/179 (63%), Gaps = 1/179 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + L K D+RG+FS+ Y ++ GL FVQ+NH FS G +RGLHFQRPP
Sbjct: 8 ILGILSLTPVKHGDARGFFSEVYRREIASAAGLPVDFVQENHVFSAQRGVLRGLHFQRPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLVRCI G I D+AVDIR SPT+G V++E+S+ N Q+++P GFAHG+ LE
Sbjct: 68 RAQGKLVRCIRGAILDVAVDIRTGSPTFGRHVAVELSSANWTQLWVPEGFAHGYAVLEAP 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
EV+YKVTD+++ + G+AW D + I W L +S+KD+ P L+ + F++
Sbjct: 128 CEVLYKVTDYWAPSSELGLAWDDPDLGIDWRL-GRDEVILSDKDRVHPRLSGLAPVFQF 185
>gi|154253743|ref|YP_001414567.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Parvibaculum lavamentivorans
DS-1]
gi|154157693|gb|ABS64910.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Parvibaculum lavamentivorans
DS-1]
Length = 189
Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats.
Identities = 88/183 (48%), Positives = 122/183 (66%), Gaps = 1/183 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V+++ + + D RG+F++TYS + E+G+ FVQDN S++ GTIRGLHFQRP
Sbjct: 8 SIPEVKVMTSSRAIDGRGFFAETYSRRDFIEIGITADFVQDNESWNSAAGTIRGLHFQRP 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQAKLVR ++G I D+AVDIR SPTY V+LE+ A + QI+IP GFAHGF TL
Sbjct: 68 DFAQAKLVRVLSGAILDVAVDIRVGSPTYAQHVALELDAADNKQIFIPRGFAHGFCTLAP 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
T V YKV +YS H+SG+ W D ++ I WP+ D+ +SEKD +LP +SPF +
Sbjct: 128 ATHVTYKVDAYYSEAHESGLLWNDPNLAIKWPV-DSAAAILSEKDADLPGFAAFESPFMF 186
Query: 182 DGL 184
+
Sbjct: 187 EAA 189
>gi|253565574|ref|ZP_04843029.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_2_5]
gi|251945853|gb|EES86260.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_2_5]
Length = 182
Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats.
Identities = 66/175 (37%), Positives = 106/175 (60%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V I++ + F D RG+F + + + Q F+QDN S S GT+RGLH+Q+
Sbjct: 7 EIDGVWIIEPKIFFDPRGYFMEAFKQQEFDATIGQINFIQDNESQSS-FGTLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR I G + D+AVD+R++SPT+G +S+ +S N Q++IP GFAHGF+
Sbjct: 66 TYSQAKLVRVIKGEVLDVAVDLRKSSPTFGKHISVLLSDENKRQLFIPRGFAHGFLVKSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YKV + Y+ + ++ + + D ++ I WP+ D+ L +SEKD+ + +
Sbjct: 126 IAIFTYKVDNIYAPQSEASILYNDPALAIDWPIADSQL-VMSEKDKQAGAFREAE 179
>gi|92118532|ref|YP_578261.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrobacter hamburgensis X14]
gi|91801426|gb|ABE63801.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrobacter hamburgensis X14]
Length = 207
Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats.
Identities = 84/180 (46%), Positives = 118/180 (65%), Gaps = 1/180 (0%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V++++T +F D+RG+F +T+ GL F+QDN S S GT+RGLHFQR
Sbjct: 29 LAIPDVKLIRTPRFSDTRGYFCETFQRADFAAQGLDCDFLQDNQSSSDRPGTVRGLHFQR 88
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVR + G I D+AVD+RR+S ++G V++E+S+ + Q+ +P GFAHGF TLE
Sbjct: 89 PPFAQTKLVRVLRGSILDVAVDLRRSSSSFGRHVAMELSSESNEQLLVPAGFAHGFCTLE 148
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T V YKV YS HDSGV W D + I WP+ + ++SEKD+ LP L + FE
Sbjct: 149 PDTVVFYKVDQVYSAAHDSGVNWADSRLGIEWPVA-SAEANLSEKDRGLPMLVDLAPVFE 207
>gi|6688599|emb|CAB65208.1| RmlC protein [Legionella pneumophila]
Length = 188
Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats.
Identities = 66/177 (37%), Positives = 100/177 (56%), Gaps = 4/177 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ ++I++ + + D RG+F +++ +K +E LG+ D FVQDN S + + +
Sbjct: 7 QIDELKIIEPKIYGDERGFFYESFQAKRYEELLGITDRFVQDNFSK-ITKRCTKEVCIIK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLV +AG +FD+AVDIR SPT+G WV + +S N Q +IP GFAHGF L
Sbjct: 66 VNKTQGKLVSVLAGEVFDVAVDIRLGSPTFGQWVGVILSGENKRQFWIPKGFAHGFYVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ YK TD+Y E + + + D + I WPL + + +S KD LN ID+
Sbjct: 126 AMADFAYKCTDYYHPESEFSIHYLDPQLAIDWPLGEQV--QLSPKDAAAKLLNLIDA 180
>gi|238560602|gb|ACR46366.1| TDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces peucetius ATCC
27952]
Length = 199
Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats.
Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 4/178 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I + + + F DSRG F + + + + G Q N S S GT+RG+HF
Sbjct: 4 LSIAGAWVHEPKIFPDSRGSFHEWFRAPEFTEAAGHGLNLAQANCSVSSR-GTLRGIHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V+C+ G + D+ VDIR SPT+G W ++ + + +Y+ G H FM L
Sbjct: 63 DVPPSQAKYVKCVRGAVLDVIVDIRVGSPTFGQWEAVRLDDADHHSVYLSEGLGHAFMAL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ V+Y ++ YS + G+ D + I WP + I P +SEKD+ P L + +
Sbjct: 123 TDDATVVYLCSEGYSPGREHGITPLDPELGIEWP--EGITPLLSEKDEAAPTLAEAKA 178
>gi|194290475|ref|YP_002006382.1| dtdp-4,deoxyrhamnose 3,5 epimerase [Cupriavidus taiwanensis LMG
19424]
gi|193224310|emb|CAQ70321.1| dTDP-4,deoxyrhamnose 3,5 epimerase [Cupriavidus taiwanensis LMG
19424]
Length = 183
Score = 244 bits (625), Expect = 3e-63, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 109/176 (61%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++ V IL+ + F DSRG+F ++++ + +E G + FVQDNHS S +RGLH+Q
Sbjct: 9 SLPEVLILEPKVFGDSRGFFFESFNQRDFEEAIGQRCTFVQDNHSRSAR-NVLRGLHYQI 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
++Q KLVR + G +FD+AVD+R++SP G WV + +SA N Q++IP GFAHGF+
Sbjct: 68 Q-HSQGKLVRVVDGEVFDVAVDMRKSSPNLGKWVGVTLSAKNKRQLWIPAGFAHGFVVTS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YKVTD++ EH+ + W D + I WP+ + P ++ KD L + D
Sbjct: 127 DVAEFLYKVTDYWHPEHERSLVWNDPHVGIEWPIDGS--PFLAAKDSAGKLLTEAD 180
>gi|78049263|ref|YP_365438.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78037693|emb|CAJ25438.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 185
Score = 244 bits (625), Expect = 3e-63, Method: Composition-based stats.
Identities = 70/173 (40%), Positives = 101/173 (58%), Gaps = 5/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ F D+RG+F +T++++ K+ GL FVQ N S S +RGLH+Q P
Sbjct: 8 LPGCVVIEPSVFGDARGYFFETWNAERFKQHGLPQNFVQSNVSTSAKS-VLRGLHYQW-P 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV +AG ++D+AVD+R SP +G W ++ +SA N Q++IP GFAHGF L
Sbjct: 66 RPQGKLVSVLAGEVYDVAVDLRSGSPHFGRWTAVLLSAENRRQVWIPEGFAHGFAVLSET 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y TD Y E D+GV W D +I I WP+ + P +S KD PFL +
Sbjct: 126 ALFSYLCTDIYVNEADAGVRWDDAAIGIDWPISN---PVLSTKDAAAPFLADV 175
>gi|304382458|ref|ZP_07364956.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella marshii DSM 16973]
gi|304336411|gb|EFM02649.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella marshii DSM 16973]
Length = 182
Score = 244 bits (625), Expect = 3e-63, Method: Composition-based stats.
Identities = 67/175 (38%), Positives = 105/175 (60%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V I++ + F D RG+F + + + ++ + F+QDN S S G +RGLH+Q+
Sbjct: 7 KIDGVFIIEPKVFYDERGYFFEAFKQEEFEQNVGKVTFIQDNESKSS-YGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR I GR+ D+AVDIR++SPT+G +V +E++ N Q +IP GFAHGF+ L
Sbjct: 66 EYSQAKLVRVIKGRVIDVAVDIRKSSPTFGQYVMVELNDENKRQFFIPKGFAHGFLVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YKV Y+ + ++ + + D I I WP+ + + VS+KD L +
Sbjct: 126 EAVFTYKVDAAYAPQAEASIRFNDSDIAIPWPISEKEI-MVSQKDLLAGGLRDSE 179
>gi|92116639|ref|YP_576368.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrobacter hamburgensis X14]
gi|91799533|gb|ABE61908.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrobacter hamburgensis X14]
Length = 184
Score = 244 bits (625), Expect = 3e-63, Method: Composition-based stats.
Identities = 69/180 (38%), Positives = 98/180 (54%), Gaps = 5/180 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I++ R F D RG+F +TY E G+ F+QDN S S G +RGLH Q
Sbjct: 7 ELPEVIIIEPRLFGDQRGFFLETYQFHRYAEYGVSRPFIQDNLSRSAR-GVLRGLHLQN- 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLV + G++ D+AVD+R SP +G V++E+S N Q+++P GFAHGF+ L
Sbjct: 65 PLTQGKLVTALRGKVLDVAVDVRVGSPNFGRHVAVELSEENRRQLWVPRGFAHGFVVLSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ YK D YS + + + W D +I I W L P +S KD P L + + Y
Sbjct: 125 TADFFYKCDDLYSPKDELSIRWDDPAIGIDWGLE---TPFLSAKDAGAPLLADVKNLPVY 181
>gi|241662193|ref|YP_002980553.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia pickettii 12D]
gi|240864220|gb|ACS61881.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia pickettii 12D]
Length = 183
Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats.
Identities = 71/174 (40%), Positives = 102/174 (58%), Gaps = 5/174 (2%)
Query: 4 NPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
V IL+ + FED RG+F +++++K + G FVQDNHS S +RGLH+Q
Sbjct: 11 PEVLILEPKVFEDQRGFFHESFNAKDFEAATGSSHAFVQDNHSRSLR-NVLRGLHYQVRQ 69
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR AG +FD+AVDIR+ SP +G WV +SA N Q++IP GFAHGF+
Sbjct: 70 P-QGKLVRVTAGEVFDVAVDIRKKSPNFGRWVGAILSAENKRQLWIPEGFAHGFVVTSEQ 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+++YK TD++ E++ +AW D + I WP+ + VS KD L +
Sbjct: 129 ADLLYKTTDYWHPEYERAIAWNDPQLGIAWPIQGEV--IVSAKDAAASLLENAE 180
>gi|294783375|ref|ZP_06748699.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 1_1_41FAA]
gi|294480253|gb|EFG28030.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 1_1_41FAA]
Length = 187
Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats.
Identities = 72/177 (40%), Positives = 109/177 (61%), Gaps = 5/177 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + +++ + FEDSRG+F ++Y+ KELG+ ++FVQDN S S G +RGLHFQ+
Sbjct: 7 KIKNLLLIEPKVFEDSRGFFIESYNYNTFKELGINNIFVQDNFSKSSK-GVLRGLHFQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
YAQAKLV + G + D+ VD+R++S T+G +E++ N ++IP GFAHGF+TLE
Sbjct: 66 EYAQAKLVNVLRGAVLDVTVDLRKDSETFGKCFIIELNEKNKRMLFIPRGFAHGFLTLED 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPFLNQ 174
NTE YK +FY+ + + G+ W D ++I W L +SEKD+ +
Sbjct: 126 NTEFFYKCDNFYNPKSEVGIIWNDIDLNIDWNLDKYNIKEDELIISEKDKKNITFKE 182
>gi|194364283|ref|YP_002026893.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stenotrophomonas maltophilia
R551-3]
gi|194347087|gb|ACF50210.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stenotrophomonas maltophilia
R551-3]
Length = 185
Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats.
Identities = 70/173 (40%), Positives = 101/173 (58%), Gaps = 5/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ F D+RG+F +T++++ LGL F Q N S S G +RGLH+Q P
Sbjct: 8 LPGCVVIEPAVFGDARGYFFETWNAERFAALGLPHRFAQSNVSTSAQ-GVLRGLHYQW-P 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV + G ++D+AVDIRR SPT+G W ++ +SA N Q +IP GFAHGF L
Sbjct: 66 RPQGKLVSVLEGEVYDVAVDIRRGSPTFGQWEAVVLSAENKKQFWIPDGFAHGFAVLSER 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y T+ Y + D+GV W D I + WP+ P++S KD++ PFL I
Sbjct: 126 AVFSYLCTEVYLKDFDAGVRWNDADIAVDWPIS---APTLSAKDESAPFLKDI 175
>gi|253583715|ref|ZP_04860913.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium varium ATCC
27725]
gi|251834287|gb|EES62850.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium varium ATCC
27725]
Length = 189
Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats.
Identities = 85/176 (48%), Positives = 109/176 (61%), Gaps = 6/176 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + IL+ F D RG+F +TY+ K +E+G+ + FVQDNHS S G +RGLHFQ
Sbjct: 10 GIEGLYILEPTVFGDERGFFLETYNKKEFEEIGIFEEFVQDNHSKS-KRGVLRGLHFQTK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
++Q KLVR I G ++D+AVDIR+ SPTYG W +E+SA N +IP GFAHGF+TLE
Sbjct: 69 -HSQGKLVRVIRGAVYDVAVDIRKGSPTYGKWYGIELSAKNKKMFFIPKGFAHGFLTLED 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPFLN 173
TE YK TD Y E+DSG+ W DK IDI W +SEKD+N
Sbjct: 128 ETEFQYKCTDLYHSEYDSGIMWNDKDIDINWNFEKYGLKEDDVVLSEKDKNHQIFK 183
>gi|206601950|gb|EDZ38432.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Leptospirillum sp. Group II
'5-way CG']
Length = 183
Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats.
Identities = 73/173 (42%), Positives = 105/173 (60%), Gaps = 5/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + ++ D RG+F +++ +K LG+ +FVQDNHS S G +RGLHFQ+
Sbjct: 8 IGGLLRIRPDVHGDERGFFLESFHAKKFAALGIPQLFVQDNHSRSAR-GVLRGLHFQKR- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR ++G +FD+AVD+R SPT+G W L +SA + +Y+P G AHGF+ LE
Sbjct: 66 HPQGKLVRVLSGSLFDVAVDLRHGSPTFGHWFGLTLSAGDPEFLYLPEGMAHGFLALEDR 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
TE+ YK TDFY + G+ W D +I I WP ++ +S KD P L +I
Sbjct: 126 TELFYKCTDFYDPADEGGLRWNDPAIGIAWPERPSV---LSPKDAAFPVLAEI 175
>gi|258653357|ref|YP_003202513.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nakamurella multipartita DSM
44233]
gi|258556582|gb|ACV79524.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nakamurella multipartita DSM
44233]
Length = 181
Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 109/176 (61%), Gaps = 3/176 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V I++ + D RG+F++++ GL VQ N S++ GT+RG+HFQ P
Sbjct: 8 IDGVAIVELEERRDDRGFFARSFCQDEFAAHGLLPEVVQCNLSYNHRAGTLRGMHFQLEP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AKLVRCI+G I DI VD+R SPTY V++E+SA N Y+P FAHGF TL N
Sbjct: 68 ATEAKLVRCISGAIVDIIVDLRPGSPTYRQHVAVELSAANRRSFYVPPMFAHGFQTLVDN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
TEV+Y+V++ Y+ + G+ + D ++ ++WPL + +S+KD + P L + +P
Sbjct: 128 TEVLYQVSERYTPGQERGLRYDDPALGLSWPLPVSA---ISDKDASWPLLEPVGAP 180
>gi|59803196|gb|AAX07743.1| dTDP-4-dehydrorhamnose-3,5-epimerase0 [Escherichia coli]
Length = 179
Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats.
Identities = 68/174 (39%), Positives = 101/174 (58%), Gaps = 5/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ I++ + F DSRG+F + + + + G++ FVQDN S S +RGLHFQ+
Sbjct: 8 LKDCVIIEPKVFGDSRGFFLEAWHKEKYENAGIKGNFVQDNRSRSSR-NVLRGLHFQKT- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV I+G ++D+AVD+R +S T+G +VS+ +S Q+Y+P GFAHGF L
Sbjct: 66 KPQGKLVSVISGEVYDVAVDLRHDSETFGQYVSVLLSGKKNNQLYVPPGFAHGFCVLSEY 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ YK TDFY + + G+ W D I I WP+ + P +SEKD L L +
Sbjct: 126 ADFHYKCTDFYDPKDEGGIIWNDPDIAIDWPVTE---PLLSEKDIKLITLAEYK 176
>gi|94264209|ref|ZP_01288005.1| dTDP-4-dehydrorhamnose 3,5-epimerase [delta proteobacterium MLMS-1]
gi|93455384|gb|EAT05585.1| dTDP-4-dehydrorhamnose 3,5-epimerase [delta proteobacterium MLMS-1]
Length = 188
Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats.
Identities = 77/176 (43%), Positives = 113/176 (64%), Gaps = 3/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I + +L+ + + D RG+F +T+ LL E LG + FVQDN S S G +RGLH+Q
Sbjct: 7 EIPDLLLLQPQVWGDERGYFMETFRLDLLTEVLGYRLDFVQDNESKSVR-GVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ+KLVR + G ++D+AVDIR +SPT+G V LE+S N Q++IP GFAH F+ L
Sbjct: 66 PPFAQSKLVRVVEGVVWDVAVDIRPSSPTFGRHVGLELSGANKRQLFIPRGFAHAFVVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ YKV ++Y+ E D G++ +D ++ I WPL L +S+KD +LP L +
Sbjct: 126 DHAFFQYKVDNYYAPECDRGISCRDPALAIDWPLPFEQL-RLSDKDSHLPLLQDAE 180
>gi|302039315|ref|YP_003799637.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Nitrospira
defluvii]
gi|300607379|emb|CBK43712.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Nitrospira
defluvii]
Length = 185
Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats.
Identities = 69/175 (39%), Positives = 99/175 (56%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ + ++ F D+RG F + + G+ FVQDN S+S GT+RGLH+Q
Sbjct: 8 LKGLFQIEPDVFGDARGKFVEIFRESRYDAAGIDKPFVQDNFSWSVR-GTLRGLHYQLA- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV + G +FD+AVDIR+ SPT+G W +E+S +N Q+YIP GFAHGF L +
Sbjct: 66 RPQGKLVMVVKGTVFDVAVDIRQGSPTFGQWYGVELSDSNMRQLYIPPGFAHGFCVLSED 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+YK TD YS + G+ W D ++ I WP+ P +S KDQ L + +
Sbjct: 126 AGFLYKCTDVYSPPDERGILWNDPALAIAWPVK---TPLLSAKDQAYKCLADMRT 177
>gi|118467223|ref|YP_883542.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium avium 104]
gi|118168510|gb|ABK69407.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium avium 104]
Length = 201
Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats.
Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 2/178 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + D+RG F + + K + G + Q N S S G +RGLHF
Sbjct: 6 LKIPGAWEITPTVHGDARGHFFEWLTDKGFRSFAGHRLDVRQANCSVSA-AGVLRGLHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P +QAK V C+ G +FD+ VDIR SPT+G W S+ + IYI G HGF+ L
Sbjct: 65 QVPPSQAKYVTCVRGSVFDVVVDIRVGSPTFGQWDSVLLDDAEHRTIYISEGLGHGFLAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ N+ V+Y + Y+ + + D ++ I WPL+ P++SE+D P L ++ +
Sbjct: 125 QDNSTVMYLCSAEYNPGREHTICATDPALGIDWPLVAGAAPTLSERDAAAPSLEEVRA 182
>gi|255536063|ref|YP_003096434.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Flavobacteriaceae bacterium
3519-10]
gi|255342259|gb|ACU08372.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Flavobacteriaceae bacterium
3519-10]
Length = 181
Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats.
Identities = 74/180 (41%), Positives = 108/180 (60%), Gaps = 8/180 (4%)
Query: 1 MNIN-----PVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIR 54
MNI I++ D RG+F + ++ K ++L GL FVQDN S S G +R
Sbjct: 1 MNIKKTPLKDCYIIEPTIIGDERGYFYEKFNEKKWEDLTGLNGHFVQDNISKS-TYGVLR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
G+H Q+ +AQAKLV C+ G++FD+AVD+R +SPT+G W +E+S N LQ+Y+P GF H
Sbjct: 60 GIHLQKGDHAQAKLVSCLEGKVFDVAVDLRESSPTFGQWFGVELSPENKLQLYVPRGFGH 119
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
GF L YK +FY E + V W DK ++I W L + + +SEKD++LP ++
Sbjct: 120 GFSVLSETAVFSYKCDNFYHKESEGSVIWNDKDLNIDWKLPENDI-LLSEKDRHLPTFSE 178
>gi|318042943|ref|ZP_07974899.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. CB0101]
Length = 205
Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats.
Identities = 73/188 (38%), Positives = 106/188 (56%), Gaps = 14/188 (7%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL----GLQ-DVFVQDNHSFSFDCGTIRG 55
+ + ++ R F D RG+F ++++ + G FVQDNHS S G +RG
Sbjct: 12 LPLAGPLLITPRVFGDDRGFFFESWNQRAFAAALEADGQPVPEFVQDNHSRSSQ-GVLRG 70
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q PP+ Q KLVRC+ G IFD+AVD+RR S ++G WV +SA N Q+++P GFAHG
Sbjct: 71 LHYQLPPHPQGKLVRCVLGEIFDVAVDLRRGSASFGQWVGARLSAANHQQLWVPAGFAHG 130
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDT--------ILPSVSEKDQ 167
F TL + EV+YK TDF+S + + + W D + I W + P +S+KD
Sbjct: 131 FFTLSEHAEVLYKTTDFWSRDCERAIRWDDPQLAIAWQQEQGAAADAPPPVAPLLSDKDA 190
Query: 168 NLPFLNQI 175
P L +
Sbjct: 191 IAPLLADL 198
>gi|282861853|ref|ZP_06270917.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp. ACTE]
gi|282563669|gb|EFB69207.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp. ACTE]
Length = 199
Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats.
Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 4/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I + + + F DSRG F + + + E G + Q N S S GT+RG+HF
Sbjct: 4 LSIPGALVHEPKIFPDSRGSFHEWFQASAFAEATGHRLSLEQANCSVSSR-GTLRGIHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V+C+ G + D+ VDIR SPTY W ++ + +Y+ G H FM L
Sbjct: 63 DVPPSQAKYVKCVRGAVLDVIVDIRVGSPTYRQWEAVRLDDVEHRSVYLSEGLGHAFMAL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ V+Y ++ YS + G+ D ++ I WP + P +S+KD P L + +
Sbjct: 123 TDDATVVYLCSEGYSPGREHGINPLDPALGIEWPA--DVPPLLSDKDAAAPTLAEAE 177
>gi|325928551|ref|ZP_08189739.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas perforans 91-118]
gi|325541090|gb|EGD12644.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas perforans 91-118]
Length = 174
Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats.
Identities = 71/182 (39%), Positives = 103/182 (56%), Gaps = 9/182 (4%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+++ F D RG+F +T++++ + GL FVQ N S S G +RGLH+Q P Q K
Sbjct: 2 VIEPAVFGDERGYFFETWNAERFGQHGLPTKFVQSNVSTSAK-GVLRGLHYQW-PRPQGK 59
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
LV + G ++D+AVD+R SP +G W ++ +SA N Q +IP GFAHGF L Y
Sbjct: 60 LVSVLEGEVYDVAVDVRHGSPNFGQWAAVVLSAENKKQFWIPEGFAHGFAVLSERAVFSY 119
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLPLL 187
TD Y E D+GV W D +I I WP+ + P +S KD PFL + + + LP+
Sbjct: 120 LCTDVYVKEADAGVRWDDAAIGIDWPISN---PLLSAKDSAAPFLGDVPA----ERLPVY 172
Query: 188 SL 189
+
Sbjct: 173 TP 174
>gi|17231981|ref|NP_488529.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nostoc sp. PCC 7120]
gi|17133625|dbj|BAB76188.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nostoc sp. PCC 7120]
Length = 181
Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats.
Identities = 76/176 (43%), Positives = 106/176 (60%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I + +L+ + F DSRG F ++Y+ + +LG+ FVQDNHSFS +RGLH+Q
Sbjct: 7 KIPAISLLEPQVFSDSRGLFFESYNQQNFTDKLGITVNFVQDNHSFS-QHNVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G IFD+AVDIR++SP++G WV E+SA N Q+++P GFAHGF+ L
Sbjct: 66 IQP-QGKLVRAVVGTIFDVAVDIRKSSPSFGQWVGYELSAENKRQLWVPPGFAHGFLVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EVIYK TD+Y+ D + W D + I WPL + P +S KD +
Sbjct: 125 EVAEVIYKTTDYYAPGGDRTILWNDPDLAINWPLKEP--PILSAKDSQGQPFKSAE 178
>gi|53713585|ref|YP_099577.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides fragilis YCH46]
gi|60681865|ref|YP_212009.1| putative LPS biosynthesis related dTDP-4-dehydrorhamnose
3,5-epimerase [Bacteroides fragilis NCTC 9343]
gi|265763906|ref|ZP_06092474.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_16]
gi|52216450|dbj|BAD49043.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides fragilis YCH46]
gi|60493299|emb|CAH08083.1| putative LPS biosynthesis related dTDP-4-dehydrorhamnose
3,5-epimerase [Bacteroides fragilis NCTC 9343]
gi|263256514|gb|EEZ27860.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_16]
gi|301163357|emb|CBW22907.1| putative LPS biosynthesis related dTDP-4-dehydrorhamnose
3,5-epimerase [Bacteroides fragilis 638R]
Length = 182
Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats.
Identities = 66/175 (37%), Positives = 106/175 (60%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V I++ + F D RG+F + + + Q F+QDN S S GT+RGLH+Q+
Sbjct: 7 EIDGVWIIEPKIFFDPRGYFMEAFKQQEFDATIGQINFIQDNESQSS-FGTLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR I G + D+AVD+R++SPT+G +S+ +S N Q++IP GFAHGF+
Sbjct: 66 AYSQAKLVRVIKGEVLDVAVDLRKSSPTFGKHISVLLSDENKRQLFIPRGFAHGFLVKSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YKV + Y+ + ++ + + D ++ I WP+ D+ L +SEKD+ + +
Sbjct: 126 IAIFTYKVDNIYAPQSEASILYNDPALAIDWPIADSQL-VMSEKDKQAGAFREAE 179
>gi|325270260|ref|ZP_08136867.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella multiformis DSM
16608]
gi|324987561|gb|EGC19537.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella multiformis DSM
16608]
Length = 184
Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats.
Identities = 69/168 (41%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I+ V +++ + F D+RG+F +++ G F+QDN S S G +RGLH+Q+
Sbjct: 7 DIDGVWVIEPKVFNDARGYFFESFKQAEFDAHIGHHVEFIQDNESKSG-YGVLRGLHYQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
++QAKLVR I GR+ D+AVDIR+NSPT+G +V +E+S +N Q +IP GFAHGF+ L
Sbjct: 66 GDFSQAKLVRVIKGRVVDVAVDIRKNSPTFGRYVMVELSEDNKRQFFIPRGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YKV + Y+ + ++ + W D +I I WP+ D +S+KD N
Sbjct: 126 DEAIFTYKVDNVYAPQAEASIRWNDGTIGIEWPV-DAKDVVLSDKDLN 172
>gi|317401446|gb|EFV82078.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Achromobacter xylosoxidans
C54]
Length = 184
Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats.
Identities = 70/177 (39%), Positives = 97/177 (54%), Gaps = 4/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + V +++ D RG F +TY +L +G + FVQDN S S +RGLH+Q
Sbjct: 6 LALPDVLLIEPEVHRDERGCFLETYRQSVLDAAVGRELRFVQDNQSES-HRNVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KL+R G I+D+AVD+R+ SPT+G WV+ +SA N Q++IP GFAHGF+ L
Sbjct: 65 TVDP-QGKLLRVTQGEIYDVAVDMRQGSPTFGQWVAQRLSAANHRQMWIPEGFAHGFLVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
V YK T +Y H V W D + I WPL P +S D+N L + D
Sbjct: 124 SARAVVSYKATSYYQPMHQQCVLWNDPVLGIEWPL-GQEAPLLSAADRNGRLLAEAD 179
>gi|225350728|ref|YP_002720717.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brachyspira hyodysenteriae
WA1]
gi|225216412|gb|ACN85145.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brachyspira hyodysenteriae
WA1]
Length = 192
Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats.
Identities = 80/183 (43%), Positives = 114/183 (62%), Gaps = 3/183 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++IN + I + R F DSRG+F +TYS K E G+++ FVQDN S S +RGLH+Q+
Sbjct: 8 LDINGLFIAEPRIFGDSRGYFLETYSEKDFFEAGIKEKFVQDNQSKS-TKNVLRGLHYQK 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Y QAKLVR + G +FD+AVD+R +SPT+G + + ++ N Q +IP GFAHGF+ L
Sbjct: 67 K-YCQAKLVRVLEGEVFDVAVDLRNDSPTFGKYYGVLLTEENKKQFFIPKGFAHGFIVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ YK +DFY E + G+ + DK+I+I W DT VS+KD LP ++ F
Sbjct: 126 ESAVFAYKCSDFYHPEEEGGIIYNDKNINIDW-TCDTKDVLVSDKDLKLPEFDKNKKYFS 184
Query: 181 YDG 183
DG
Sbjct: 185 LDG 187
>gi|71065772|ref|YP_264499.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Psychrobacter arcticus 273-4]
gi|71038757|gb|AAZ19065.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Psychrobacter arcticus 273-4]
Length = 190
Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats.
Identities = 82/179 (45%), Positives = 114/179 (63%), Gaps = 7/179 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLK----ELGLQ-DVFVQDNHSFSFDCGTIRGL 56
I + IL+ R FED RGWF ++++ K E G + FVQDNHS S G +RGL
Sbjct: 7 KIPELLILEPRVFEDDRGWFMESFNHKSFTTLLNERGFEAPNFVQDNHS-SSQKGALRGL 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H+Q P+AQAKLVR + GR +D+AVDIR++SPT+G WV +E++A N Q +IP GFAHGF
Sbjct: 66 HYQLNPFAQAKLVRVVQGRAWDVAVDIRQHSPTFGQWVGIELTATNHRQFWIPAGFAHGF 125
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ LE NT+ +YK T +Y E + + W D S+DI WP+ + + ++EKD Q
Sbjct: 126 IALEDNTQFLYKTTSYYHKESERTILWNDDSLDINWPV-EGLELKLTEKDHQGATFTQA 183
>gi|225023509|ref|ZP_03712701.1| hypothetical protein EIKCOROL_00367 [Eikenella corrodens ATCC
23834]
gi|224943749|gb|EEG24958.1| hypothetical protein EIKCOROL_00367 [Eikenella corrodens ATCC
23834]
Length = 180
Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats.
Identities = 70/173 (40%), Positives = 105/173 (60%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V+I++ D RG+F +T+ +E F+Q+NHS S + G +RGLH+Q
Sbjct: 8 LPDVKIIEPEVHGDERGFFMETFRDNWFREHIGHHTFMQENHSRS-EHGVLRGLHYQTV- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR +AG +FD+AVD+RR+SPT+G WV +SA N Q++IP GFAHGF T + +
Sbjct: 66 CPQGKLVRVVAGSVFDVAVDLRRSSPTFGHWVGAVLSAENRYQMWIPPGFAHGFYTTDSH 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+++YK T++Y +H+ + W D ++ I WPL P +S KD L Q
Sbjct: 126 ADIVYKCTNYYQPDHEHTLFWHDPAVGIDWPL--AAPPLLSGKDAAGSLLAQA 176
>gi|34541218|ref|NP_905697.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas gingivalis W83]
gi|34397534|gb|AAQ66596.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas gingivalis W83]
Length = 196
Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats.
Identities = 74/192 (38%), Positives = 114/192 (59%), Gaps = 2/192 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ R F D RG+F +++S + ++ FVQDN S S G +RGLHFQ+P
Sbjct: 7 EIPEVVILEPRLFRDDRGYFFESFSRQEIETGIRPINFVQDNESAS-RYGVLRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR + G + D AVDIR SPT+G +V++E+S N Q++IP GFAHGF+ L
Sbjct: 66 PHAQSKLVRVVRGCVIDYAVDIRFGSPTFGKYVAVELSDTNFRQLFIPRGFAHGFVVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK ++Y+ + + +AW D ++DI W + + +S KDQ P ++ S ++
Sbjct: 126 EVVFQYKCDNYYAPQSEGAIAWNDPNLDIEWKIPAEDI-ILSAKDQANPSWTELISSEDF 184
Query: 182 DGLPLLSLNMER 193
L + ++
Sbjct: 185 RNLFPYNQDLYE 196
>gi|163754602|ref|ZP_02161724.1| putative LPS biosynthesis related dTDP-4-dehydrorhamnose
3,5-epimerase [Kordia algicida OT-1]
gi|161325543|gb|EDP96870.1| putative LPS biosynthesis related dTDP-4-dehydrorhamnose
3,5-epimerase [Kordia algicida OT-1]
Length = 177
Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats.
Identities = 71/178 (39%), Positives = 105/178 (58%), Gaps = 10/178 (5%)
Query: 1 MNIN-----PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
MNI +++ + F D+RG F ++Y+ + FVQDN S S G +RG
Sbjct: 1 MNITHTPLAGCFVIEPQVFGDARGSFMESYNEQKFPA---DVHFVQDNQSVS-QKGVLRG 56
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LHFQ +AQAKLVR I G + D+AVD+R NS T+G S+ ++A N Q+++P GFAHG
Sbjct: 57 LHFQTGEHAQAKLVRVIRGEVLDVAVDVRPNSETFGQHFSIILNAENNKQLFVPRGFAHG 116
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
F L+ +T YK +FY+ + +SG+ + D I I W +L+ +S+KD+ LP L
Sbjct: 117 FAVLQDDTIFAYKCDNFYNKDAESGIIYNDPEIAIDW-MLNEDEIILSDKDKLLPNLK 173
>gi|110597108|ref|ZP_01385397.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium ferrooxidans DSM
13031]
gi|110341299|gb|EAT59764.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium ferrooxidans DSM
13031]
Length = 199
Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats.
Identities = 68/180 (37%), Positives = 104/180 (57%), Gaps = 3/180 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V ++ F D RG+F +++ L++E + FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IPDVLFIEPEVFGDDRGYFFESFRQDLMEEHVGRVEFVQDNESKSG-YGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q+KLVR + GR+ D+AVD+R SP YG V + +++P GFAHGF+ L +
Sbjct: 67 FTQSKLVRVVRGRVLDVAVDVRLGSPWYGRHVYSLLDGERKNMMWVPKGFAHGFLVLSED 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK ++Y+ HD+G+ W D ++ I W L ++++ VSE+D D F Y+
Sbjct: 127 AVFSYKCDNYYAPSHDTGIMWNDPALGIDWQLPESVI-RVSERDSKQGKFGLADC-FPYE 184
>gi|124515990|gb|EAY57499.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Leptospirillum rubarum]
Length = 183
Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats.
Identities = 73/173 (42%), Positives = 103/173 (59%), Gaps = 5/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + ++ D RG+F +++ +K LG+ +FVQDNHS S G +RGLHFQ+
Sbjct: 8 IRGLLRIRPDVHGDERGFFLESFHAKKFAALGIPHLFVQDNHSRSAR-GVLRGLHFQKR- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR ++G +FD+AVD+R SPT+G W L +SA + +Y+P G AHGF+ LE
Sbjct: 66 HPQGKLVRVLSGSLFDVAVDLRHGSPTFGHWFGLTLSAGDPEFLYLPEGMAHGFLALEDR 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
TE+ YK TDFY + G+ W D +I I WP +S KD P L +I
Sbjct: 126 TELFYKCTDFYDPADEGGLRWNDPAIGIAWP---ETPAVLSPKDAAFPVLAKI 175
>gi|312113624|ref|YP_004011220.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodomicrobium vannielii ATCC
17100]
gi|311218753|gb|ADP70121.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodomicrobium vannielii ATCC
17100]
Length = 183
Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats.
Identities = 72/177 (40%), Positives = 107/177 (60%), Gaps = 3/177 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ F D RG+F++T+ ++ + GL FVQ + S + GT+RG+HFQ PP
Sbjct: 8 LEGAFMIEPEPFRDERGFFARTFCTREFEARGLVCNFVQHSISSTIRKGTVRGMHFQTPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ + K+V C G IFD+ VD+RR +PT+ W E++A N ++YIP GFAHGF +L +
Sbjct: 68 HGEVKVVTCTRGAIFDVIVDLRRAAPTFLRWQGFELTAENRRRLYIPEGFAHGFQSLTDD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
EV Y ++ FY+ E GV D I I WPL + S+SEKD+N P N +PF
Sbjct: 128 VEVSYLISAFYAPESAGGVPHDDPLIGIEWPLS---ISSISEKDRNWPPFNASAAPF 181
>gi|187251274|ref|YP_001875756.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Elusimicrobium minutum
Pei191]
gi|186971434|gb|ACC98419.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Elusimicrobium minutum
Pei191]
Length = 185
Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats.
Identities = 70/172 (40%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ + F+D RG+F ++Y+ K+ ++ G+ FVQDN SFS IRGLHFQ P
Sbjct: 7 EIEGLIVITPKIFKDERGYFFESYNKKVFEDAGIVSNFVQDNQSFSVK-NVIRGLHFQAP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQAKLVR G+++D+AVD+R S T+G W +E+S N YIP GFAHGF L
Sbjct: 66 PHAQAKLVRAQRGKVWDVAVDLRPQSKTFGQWFGVELSEENQKMFYIPRGFAHGFSVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ YK +FY+ E + G+ + D ++I W + V+EKD++ P+
Sbjct: 126 SAVFQYKCDNFYNKESEGGILYNDAVLNIDWKVPFGGE-IVNEKDKSYPWFE 176
>gi|87303233|ref|ZP_01086026.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Synechococcus sp. WH
5701]
gi|87282128|gb|EAQ74089.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Synechococcus sp. WH
5701]
Length = 191
Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats.
Identities = 69/174 (39%), Positives = 97/174 (55%), Gaps = 4/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V + + + F D RG+F +T +L E G+ VQ N S S CG +RGLH+Q
Sbjct: 7 SIPEVLLFQPKVFGDERGFFVETARQSVLDEAGIPP-LVQHNQSRS-RCGVLRGLHYQLV 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVRC G +FD+AVD+RR S T+G WV + + Q+++P GFAHGF+ L
Sbjct: 65 -QTQGKLVRCSRGAVFDVAVDVRRGSATFGQWVGAILDDVSHHQLWVPPGFAHGFLVLSE 123
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP-LLDTILPSVSEKDQNLPFLNQ 174
+ Y +D+Y + G+AW D + I WP L D + +S KD P L Q
Sbjct: 124 VADFCYLCSDYYHPPSEQGIAWDDPELGIAWPDLPDGVEAQLSAKDLVNPRLAQ 177
>gi|327394237|dbj|BAK11659.1| dTDP-4-dehydrorhamnose 3,5-epimerase RfbC [Pantoea ananatis
AJ13355]
Length = 177
Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats.
Identities = 68/175 (38%), Positives = 101/175 (57%), Gaps = 6/175 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ + D RG+F +T+ + +EL FVQDN+S S +RGLHFQ+
Sbjct: 7 KIADVKIIQPAVYGDDRGFFLETFEKRRYQELLETHLEFVQDNYSRSGR-HVLRGLHFQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G +FD+AVDIR SPT+G W S+ +S N Q++IP G AHGF+ L
Sbjct: 66 TEP-QGKLVRVVRGEVFDVAVDIRPGSPTFGQWESILLSEENKTQLWIPPGLAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK T +Y+ + ++ + W D + I WP+ P +S KDQ L ++
Sbjct: 125 DVADFEYKCTQYYNPKDEACLMWNDPDVAIQWPVE---QPILSVKDQQGLSLQEL 176
>gi|320332782|ref|YP_004169493.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Deinococcus maricopensis DSM
21211]
gi|319754071|gb|ADV65828.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Deinococcus maricopensis DSM
21211]
Length = 185
Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats.
Identities = 69/172 (40%), Positives = 100/172 (58%), Gaps = 3/172 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ I+ ED RG F++TY + E GL+ Q N SF+ GT+RG+HFQ PP
Sbjct: 8 LRGAFIIDVDVREDERGGFARTYCGREFAEHGLKVDVAQANLSFNHKAGTLRGMHFQLPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+A+ KLVRC G I D+ VD+R +SPTY V++E+SA N +Y+P FAHG+ L
Sbjct: 68 FAETKLVRCTRGAILDVIVDLRPDSPTYLQHVAVELSAENRRALYVPELFAHGYQALTDG 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
EV+Y+V ++Y+ H+ G+ D + + WPL T+ +S KD P L
Sbjct: 128 AEVVYQVGEYYTPGHERGLRHDDPRLGLQWPLPVTV---ISAKDAAWPLLTD 176
>gi|187927734|ref|YP_001898221.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia pickettii 12J]
gi|187724624|gb|ACD25789.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia pickettii 12J]
Length = 184
Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats.
Identities = 69/161 (42%), Positives = 104/161 (64%), Gaps = 4/161 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V IL+ + + DSRG+F ++++ + + L G+ FVQDNHS S G +RG+H+Q
Sbjct: 10 LPGVLILEPKVYGDSRGFFFESFNGREFETLTGVSTPFVQDNHSMS-RKGVLRGMHYQIE 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR I+G +FD+AVD+R++S T+G W + +SA N Q+++P GFAHGF+ L
Sbjct: 69 -HAQGKLVRVISGEVFDVAVDLRKSSSTFGKWAGVRLSAENKRQLWVPPGFAHGFLVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSV 162
E +YK TD++ EH+ V W D +I I WPL P +
Sbjct: 128 TAEFLYKTTDYWYPEHERSVVWNDPTIAIDWPLA-GAEPIL 167
>gi|302346399|ref|YP_003814697.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella melaninogenica
ATCC 25845]
gi|302150921|gb|ADK97182.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella melaninogenica
ATCC 25845]
Length = 184
Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats.
Identities = 70/177 (39%), Positives = 107/177 (60%), Gaps = 4/177 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ V I++ + F D RG+F +++ K +G F+QDN S S G +RGLH+Q
Sbjct: 7 EIDGVWIIEPKVFNDDRGYFFESFKQAEFDKNVGYHVDFIQDNESKSS-YGVLRGLHYQE 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQAKLVR I G++ D+AVD+R++SPT+G +V +E+S +N Q ++P GFAHGF+ L
Sbjct: 66 SDTAQAKLVRVIKGKVVDVAVDLRKSSPTFGKYVMVELSEDNKRQFFVPRGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN-LPFLNQID 176
YKV + YS + ++ + W D+++ I WP+ DT +S+KD N L
Sbjct: 126 DEAIFTYKVDNVYSPQTEASLRWNDETVGIKWPI-DTKDVILSDKDLNKGLSLKDAK 181
>gi|312891211|ref|ZP_07750732.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mucilaginibacter paludis DSM
18603]
gi|311296290|gb|EFQ73438.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mucilaginibacter paludis DSM
18603]
Length = 182
Score = 243 bits (622), Expect = 7e-63, Method: Composition-based stats.
Identities = 78/177 (44%), Positives = 109/177 (61%), Gaps = 2/177 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ R F D RG+F ++Y+ + E G+ FVQDN S S GT+RGLH Q PP
Sbjct: 8 IEGLLIIEPRVFPDDRGYFYESYNQQKYIEAGINVNFVQDNQS-SSSKGTLRGLHAQAPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q KLVR I G + D+AVDIR+ SPTYG ++ +++SA N LQ++IP GF HGF LE +
Sbjct: 67 YGQDKLVRVIKGSVIDVAVDIRKGSPTYGQYLKIKLSAQNNLQLWIPQGFLHGFFALEDD 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ YK+T+FY + GV D + I W + + ++S KD+ LP SPF
Sbjct: 127 SIFAYKITNFYDKASEIGVKITDPELGIDWGFPISDI-TLSPKDEALPDFKSFVSPF 182
>gi|317052620|ref|YP_004113736.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfurispirillum indicum
S5]
gi|316947704|gb|ADU67180.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfurispirillum indicum
S5]
Length = 189
Score = 243 bits (622), Expect = 7e-63, Method: Composition-based stats.
Identities = 85/176 (48%), Positives = 112/176 (63%), Gaps = 3/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V +L+ R EDSRG+F +T+ L LG Q FVQDN S S CG +RGLH+Q
Sbjct: 7 QIADVLLLEPRVLEDSRGYFMETFRLDALHAALGFQVGFVQDNESCS-RCGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ+KLVR +AG + D+AVDIRR SPT+G VS E+SA N QI+IP GFAHGF+ L
Sbjct: 66 PPFAQSKLVRVVAGCVLDVAVDIRRESPTFGACVSTELSAENKRQIFIPRGFAHGFVVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
V YKV ++YS + D G+ + D + I W L L +S+KD + P L + +
Sbjct: 126 EVAVVQYKVDNYYSSKSDRGIVYNDPHLGIDWRLPADQL-LLSDKDSHQPSLKEAE 180
>gi|312882944|ref|ZP_07742676.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309369463|gb|EFP96983.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 184
Score = 243 bits (622), Expect = 7e-63, Method: Composition-based stats.
Identities = 70/173 (40%), Positives = 102/173 (58%), Gaps = 5/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
N++ +++ + D RG+F +++ + +E+G+++ FVQDN S S G +RGLH Q
Sbjct: 7 NLDGCIVIEPDVYGDERGYFFESFHEEKYREIGIKETFVQDNFSKSSK-GILRGLHSQL- 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLV G +FD+AVD+R SPT+G S+ +S N Q+YIP GFAHGF+TL
Sbjct: 65 NKPQGKLVSVTKGEVFDVAVDLRETSPTFGKHFSIVLSDKNHKQLYIPPGFAHGFLTLSD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
YK TDFY E + G+ W D +DI WP T P +S+KD+ P +
Sbjct: 125 VVHFGYKCTDFYDPEDELGILWNDADLDIDWP---TDTPQLSKKDKEQPSFQE 174
>gi|309779481|ref|ZP_07674242.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia sp. 5_7_47FAA]
gi|308921722|gb|EFP67358.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia sp. 5_7_47FAA]
Length = 197
Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats.
Identities = 71/190 (37%), Positives = 107/190 (56%), Gaps = 8/190 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V + + D RG+F++ + + L G Q NHS+S GT+RGLHFQ PP
Sbjct: 11 LAGVVEINRKVIGDHRGYFTRFFCADELAAAGFDRPIAQINHSYSAKRGTVRGLHFQYPP 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+A+ KLV C+ GR+FD+AVD+R SPT+ W ++E+SA + +P GFAHGF LE +
Sbjct: 71 HAEIKLVSCVRGRVFDVAVDLRAGSPTFLQWHAVELSAERHNSLLVPRGFAHGFQALEDD 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
E++Y + Y+ + G+ D + I WPL T S++D+N P L +
Sbjct: 131 CELLYLTSTPYAQAAEDGLNPTDSRLGIAWPLDMTEC---SDRDRNHPPLTDA-----FA 182
Query: 183 GLPLLSLNME 192
G+ L +LN E
Sbjct: 183 GIALRALNPE 192
>gi|93005456|ref|YP_579893.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Psychrobacter cryohalolentis
K5]
gi|92393134|gb|ABE74409.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Psychrobacter cryohalolentis
K5]
Length = 177
Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats.
Identities = 66/173 (38%), Positives = 103/173 (59%), Gaps = 6/173 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V I++ + F D RG+F +T++++ KE G+ FVQDNHS S G +RGLHFQ+
Sbjct: 7 KLAGVLIIEPKIFGDYRGFFKETFNAERYKELAGIDLTFVQDNHSRSGK-GVLRGLHFQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLV G ++D+A DI S TYG +V +E+S +N Q+++P G+AHGF+ +
Sbjct: 66 T-KPQGKLVSVTLGAVYDVAADINPESSTYGEYVGVELSEDNHRQLWVPPGYAHGFLVMS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ +YK TD+Y + G+AW ++I WP+ D +S+KD+ L
Sbjct: 125 DEVDFVYKCTDYYDPTDEGGIAWNCPLLNIDWPISD---VKLSDKDKAYAGLE 174
>gi|297199641|ref|ZP_06917038.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sviceus ATCC
29083]
gi|197713431|gb|EDY57465.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sviceus ATCC
29083]
Length = 197
Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 4/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I+ + + + F D RG F + + + + E G Q N S S GT+RG+HF
Sbjct: 4 LSISGAWVFEPKVFPDGRGSFHEWFKAPVFAEAAGHSLGLAQANMSVSSR-GTLRGIHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V+C+ G + D+ VDIR SPT+G W + + + +Y+ G HGFM L
Sbjct: 63 DVPPGQAKYVKCVRGAVLDVIVDIRVGSPTFGQWEIVRLDDQDHHAVYLSEGLGHGFMAL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ V+Y ++ Y+ E + G+ D I I WP D + P +S KD+ P L +
Sbjct: 123 TDDATVVYLCSEGYAPEREHGIHPLDPEIGIEWP--DGVAPLLSPKDEQAPTLAEA 176
>gi|297194408|ref|ZP_06911806.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces
pristinaespiralis ATCC 25486]
gi|197718783|gb|EDY62691.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces
pristinaespiralis ATCC 25486]
Length = 210
Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats.
Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 4/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I + + + F DSRG F + + G Q N S S GT+RG+HF
Sbjct: 15 LSITGAWVHEPKIFPDSRGSFHEWFKEGDFAKAAGHGLRLAQANCSVSSR-GTLRGVHFA 73
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V+C+ G + D+ VDIR SPT+G W ++ + + +Y+ G H FM L
Sbjct: 74 DVPPSQAKYVKCVRGTVLDVVVDIRVGSPTFGKWEAVRLDDVDHRSVYLSEGLGHAFMAL 133
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ V+Y ++ Y+ E + G+ D + I WP I P +S+KD P L + +
Sbjct: 134 TDDATVVYLCSEGYAPEREHGIDPLDPGLGIEWP--QDITPVLSDKDAAAPSLAEAE 188
>gi|254420592|ref|ZP_05034316.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brevundimonas sp. BAL3]
gi|196186769|gb|EDX81745.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brevundimonas sp. BAL3]
Length = 170
Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats.
Identities = 93/168 (55%), Positives = 116/168 (69%), Gaps = 1/168 (0%)
Query: 22 SQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAV 81
+TYS G+ FVQDN SFS GTIRGLHFQRPP+AQAKLVRC+ G I D AV
Sbjct: 1 METYSEASATAAGVNARFVQDNQSFSAFQGTIRGLHFQRPPHAQAKLVRCVRGSIMDYAV 60
Query: 82 DIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGV 141
DIRR SPTYG V+ +++A G Q+++P GFAH F+TLE + EV YKV+D Y+ + D G+
Sbjct: 61 DIRRGSPTYGQHVAAKLTAVGGEQLFVPVGFAHAFVTLEPDVEVAYKVSDVYAPDCDGGI 120
Query: 142 AWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLPLLSL 189
W D I I WPL ++ +S+KD+ LP L + DSPFEYDGLPL L
Sbjct: 121 VWSDPIIGIDWPLPESG-AVLSDKDKILPTLAEFDSPFEYDGLPLAPL 167
>gi|9957843|gb|AAG09521.1|AF279620_5 dTDP-6-deoxy-D-glucose-3,5-epimerase [Salmonella enterica]
gi|226290775|gb|ACO40474.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Salmonella enterica subsp.
enterica serovar Dakar]
gi|298353037|gb|ADI77016.1| RmlC [Salmonella enterica]
Length = 183
Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats.
Identities = 76/177 (42%), Positives = 116/177 (65%), Gaps = 5/177 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ I++ + D+RG+F ++Y+ + ++L + F QDN S S G +RGLHFQ
Sbjct: 7 KIHEALIIEPIIYSDARGFFFESYNQLIFEDLIERKINFCQDNQSLS-HKGVLRGLHFQV 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P AQ KLVRC+ G+I+D+ VD+R +SPTY W +SA+N Q++IP G AHGF++LE
Sbjct: 66 NPKAQGKLVRCLHGKIYDVIVDLRVDSPTYKKWEGFVLSASNKKQLWIPEGCAHGFLSLE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
NTE+ YK T++YS++H+ + W D S+ I WPL D I +SEKD+N ++ ++
Sbjct: 126 DNTELAYKATEYYSLQHERCIRWNDPSLKIEWPLSDYI---ISEKDKNGISFSEWEN 179
>gi|300812685|ref|ZP_07093095.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|300496345|gb|EFK31457.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
Length = 202
Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats.
Identities = 73/189 (38%), Positives = 100/189 (52%), Gaps = 18/189 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ D RG+F +TY+ +KE G FVQDN S S G +RGLHFQ+
Sbjct: 12 GIEGLAVITPAVHGDDRGYFMETYNENDMKEAGFDINFVQDNQS-SSTKGVLRGLHFQKH 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R +S TYG W +E++A N Q IP GFAHGF+ L
Sbjct: 71 -FPQCKLVRAVRGDVFDVAVDLRSDSKTYGKWYGVELTAENKKQFLIPEGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YKV DF+ + G+AW D I I WP L D ++S++
Sbjct: 130 VAEFCYKVNDFWHPNDEGGMAWNDPEIGIEWPQLVGEYPGSADASGYALEDGTKLTLSDR 189
Query: 166 DQNLPFLNQ 174
DQ +
Sbjct: 190 DQKWLGIKD 198
>gi|260590770|ref|ZP_05856228.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella veroralis F0319]
gi|260537256|gb|EEX19873.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella veroralis F0319]
Length = 184
Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats.
Identities = 69/181 (38%), Positives = 108/181 (59%), Gaps = 5/181 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V +++ + F D RG+F + + E G F+QDN S S G +RGLH+Q+
Sbjct: 7 EIEGVWVIEPKVFNDQRGYFFEAFKQAEFDEHIGHHVEFIQDNESKSS-FGVLRGLHYQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
++QAKLVR I G++ D+AVD+R++SPT+G +V++E+S +N Q +IP GFAHGF+ L
Sbjct: 66 GEHSQAKLVRVIKGKVIDVAVDLRKSSPTFGKYVAVELSEDNKRQFFIPRGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN-QIDSPF 179
YKV + Y+ + ++ + W D+ + I W +D +SEKD N L+ + F
Sbjct: 126 DEAIFTYKVDNVYAPQSEASIRWNDEHVGIKW-AIDPKDILLSEKD-NAKSLSWEAAEKF 183
Query: 180 E 180
E
Sbjct: 184 E 184
>gi|63054926|gb|AAY29003.1| dTDP-dehydrorhamnose 3,5-epimerase [Stenotrophomonas maltophilia]
Length = 185
Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats.
Identities = 76/187 (40%), Positives = 105/187 (56%), Gaps = 9/187 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +L+ F D RG+F +T+++ ELGL FVQ N S S G +RGLH+Q P
Sbjct: 8 LPGCVVLEPAVFGDDRGFFFETWNAARFGELGLPTKFVQSNVSSSAK-GVLRGLHYQW-P 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV + G ++D+AVDIR+ SPT+G W ++ +SA N Q +IP GFAHGF L
Sbjct: 66 RPQGKLVSVLEGEVYDVAVDIRQGSPTFGRWEAVLLSAENKRQFWIPEGFAHGFAVLSER 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
Y T+ Y E D+ V W D + + WP+ PS+S KD+ PFL I + D
Sbjct: 126 AIFSYLCTEVYLREFDAAVRWNDADLAVDWPVS---APSLSPKDEQAPFLKDIAA----D 178
Query: 183 GLPLLSL 189
LP+ S
Sbjct: 179 RLPVYSP 185
>gi|254521791|ref|ZP_05133846.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stenotrophomonas sp. SKA14]
gi|219719382|gb|EED37907.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stenotrophomonas sp. SKA14]
Length = 185
Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats.
Identities = 71/174 (40%), Positives = 101/174 (58%), Gaps = 5/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ +++ F D+RG+F +T++++ LGL D FVQ N S S +RGLH+Q
Sbjct: 7 KLPGCVVIEPAVFGDARGYFFETWNAERFASLGLPDRFVQSNVSTSAQ-DVLRGLHYQW- 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLV + G ++D+AVDIRR SPT+G W ++ +SA N Q +IP GFAHGF L
Sbjct: 65 PRPQGKLVSVLEGEVYDVAVDIRRGSPTFGQWEAVVLSAENKKQFWIPEGFAHGFAVLSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y T+ Y + D+GV W D I + WP+ P++S KD+ PFL I
Sbjct: 125 RAVFSYLCTEVYLKDFDAGVRWNDADIAVDWPVS---APTLSAKDETAPFLKDI 175
>gi|254819210|ref|ZP_05224211.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium intracellulare
ATCC 13950]
Length = 209
Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats.
Identities = 59/178 (33%), Positives = 94/178 (52%), Gaps = 2/178 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + + DSRG F + + K + G + Q N S S G +RGLHF
Sbjct: 10 LKVPGAWEITPAVHGDSRGHFFEWLTDKGFRSFAGHRLDVRQANCSVSS-AGVLRGLHFA 68
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P +QAK V C+ G +FD+ VDIR SPT+G W S+ + IYI G HGF+ L
Sbjct: 69 QVPPSQAKYVTCVRGAVFDVVVDIRVGSPTFGQWDSVLLDDTEHRTIYISEGLGHGFLAL 128
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ N+ V+Y + Y+ + + + D ++ I WPL+D P++S++D P L+ + +
Sbjct: 129 QDNSTVMYLCSAEYNPQREHTICATDPALGIDWPLVDGAPPTLSDRDAAAPSLDDVRA 186
>gi|325143318|gb|EGC65653.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis
961-5945]
Length = 155
Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats.
Identities = 64/150 (42%), Positives = 95/150 (63%), Gaps = 2/150 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH+Q
Sbjct: 8 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLHYQTEN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 67 -TQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDE 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW 152
E +YK TD+Y+ E + + W D ++ I W
Sbjct: 126 AEFVYKCTDYYNPEAEHSLIWNDPTVGIDW 155
>gi|86144024|ref|ZP_01062362.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leeuwenhoekiella blandensis
MED217]
gi|85829484|gb|EAQ47948.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leeuwenhoekiella blandensis
MED217]
Length = 178
Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats.
Identities = 69/172 (40%), Positives = 103/172 (59%), Gaps = 3/172 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ IL+ R F+D RG+F ++++ K +EL G FVQDN SFS G IRG+HFQ+
Sbjct: 8 LKGCFILEPRVFKDDRGYFFESFNQKTFEELVGQPVHFVQDNQSFS-QYGVIRGIHFQKG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQAKLVR + G + D+AVD+R SPTYG V+++++A N Q+++P GF HGF L
Sbjct: 67 AHAQAKLVRVLEGEVLDVAVDLREGSPTYGQHVAVKLNAENNRQLFVPRGFGHGFSVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
YK ++Y + G+ + D ++ I W + + + VSEKD L
Sbjct: 127 TAVFAYKCDNYYHKASEGGIVYNDPTLAIDWGIPEEKI-QVSEKDLVLEHFK 177
>gi|329667487|gb|AEB93435.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus johnsonii DPC
6026]
Length = 202
Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats.
Identities = 72/189 (38%), Positives = 100/189 (52%), Gaps = 18/189 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ D RG+F +T++ + + + G FVQDN S S G +RGLHFQ+
Sbjct: 12 GIEGLAVITPTVHGDDRGYFMETFNQRDMMDAGFSINFVQDNQS-SSTKGVLRGLHFQKK 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G +FD+AVD+R +S TYG W +E++A N Q IP GFAHGF+ L
Sbjct: 71 -YPQIKLVRAVRGSVFDVAVDLRSDSKTYGKWYGVELTAENKKQFLIPQGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YKV DF+ + G+AW D I I WP L D ++S++
Sbjct: 130 EAEFCYKVNDFWHQNDEGGMAWNDPEIGIEWPHLKGDYPGSPDASGYTLDDGTKLTLSDR 189
Query: 166 DQNLPFLNQ 174
DQ L
Sbjct: 190 DQEWKGLKD 198
>gi|113867830|ref|YP_726319.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia eutropha H16]
gi|113526606|emb|CAJ92951.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia eutropha H16]
Length = 183
Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats.
Identities = 66/169 (39%), Positives = 105/169 (62%), Gaps = 5/169 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I++ + F D RG+F ++++ +L +E G++ FVQDNHS S +RGLH+Q
Sbjct: 9 DIPEVLIIEPKVFGDDRGFFYESFNGRLFEEATGVKRTFVQDNHSRS-TRNVLRGLHYQI 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+ Q KLVR + G++FD AVD+R +SP +G WV + +SA N ++++P GFAHGF+ +
Sbjct: 68 K-HPQGKLVRVVVGQVFDAAVDLRMSSPNFGKWVGVMLSAENKRELWVPEGFAHGFVVIS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
E +YK TD++ EH+ + W D + I WP+ P ++ KD
Sbjct: 127 EYAEFLYKTTDYWYPEHERSLLWNDTRVGIDWPIHGE--PVLAAKDAAA 173
>gi|315039055|ref|YP_004032623.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus amylovorus GRL
1112]
gi|312277188|gb|ADQ59828.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus amylovorus GRL
1112]
Length = 202
Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats.
Identities = 74/189 (39%), Positives = 100/189 (52%), Gaps = 18/189 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ D RG+F +T++ + + E G FVQDN S S G +RGLHFQ+
Sbjct: 12 GIEGLAVITPTVHGDDRGYFMETFNQRDMMEAGFSINFVQDNQS-SSTKGVLRGLHFQKH 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G +FD+AVD+R NS TYG W +E++A N Q IP GFAHGF+ L
Sbjct: 71 -YPQVKLVRAVRGSVFDVAVDLRSNSKTYGKWYGVELTAENKKQFLIPQGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YKV DF+ + G+AW D I I WP L D +++E+
Sbjct: 130 VAEFCYKVNDFWHPNDEGGMAWNDPEIGIEWPHLKGDYPGSADASGYTLDDGTKLNMAER 189
Query: 166 DQNLPFLNQ 174
DQ L
Sbjct: 190 DQEWKGLKD 198
>gi|284044611|ref|YP_003394951.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Conexibacter woesei DSM
14684]
gi|283948832|gb|ADB51576.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Conexibacter woesei DSM
14684]
Length = 182
Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats.
Identities = 68/173 (39%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ +L+ + F D RG+F++T+ G+ F QDNHS S GT+RG+HFQ P
Sbjct: 8 ISGPVLLEPQVFGDHRGFFAETFREDAWSAAGVDVAFAQDNHSRS-RRGTLRGMHFQMTP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
QAKLVRC G I D+ VD+RR S T+G W + E+ + Q+++P GFAHGF
Sbjct: 67 -GQAKLVRCARGAIVDVVVDLRRASSTFGEWEAFELDDESMRQLFVPIGFAHGFCVTSEV 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+V+YK + +Y ++G+A+ D ++ I WP + P VSE+D P L +
Sbjct: 126 ADVVYKCSSYYDPATEAGIAYDDPAVGIVWP--SDVEPVVSERDAQAPRLADV 176
>gi|28897003|ref|NP_796608.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio parahaemolyticus RIMD
2210633]
gi|153839162|ref|ZP_01991829.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio parahaemolyticus
AQ3810]
gi|260362303|ref|ZP_05775270.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio parahaemolyticus
K5030]
gi|260897618|ref|ZP_05906114.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio parahaemolyticus
Peru-466]
gi|260899548|ref|ZP_05907943.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio parahaemolyticus
AQ4037]
gi|28805211|dbj|BAC58492.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio parahaemolyticus RIMD
2210633]
gi|149747334|gb|EDM58312.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio parahaemolyticus
AQ3810]
gi|308087540|gb|EFO37235.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio parahaemolyticus
Peru-466]
gi|308108810|gb|EFO46350.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio parahaemolyticus
AQ4037]
gi|308111319|gb|EFO48859.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio parahaemolyticus
K5030]
Length = 187
Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats.
Identities = 70/178 (39%), Positives = 109/178 (61%), Gaps = 4/178 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I + +++ + F DSRG+F ++++ E G++ FVQDNHS S GT+RGLH Q
Sbjct: 7 EIEGLLVVEPKVFGDSRGFFLESWNKLKFDEATGMEVSFVQDNHSKSES-GTLRGLHIQT 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQ KLVR + G ++D+AVD+R++S TYG W L +SA N Q++IP GFAHGF+ LE
Sbjct: 66 KN-AQGKLVRVVKGAVYDVAVDLRKDSKTYGKWFGLILSAENKKQLWIPKGFAHGFLALE 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS-VSEKDQNLPFLNQIDS 177
+TE +YK +Y ++ + W DK++ I W ++ +S+KD L++ +
Sbjct: 125 DDTEFLYKCDGYYDPLYEVSIDWNDKALAIDWGQFESFKTLKLSDKDSKGIGLSEFST 182
>gi|282858700|ref|ZP_06267854.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella bivia JCVIHMP010]
gi|282588504|gb|EFB93655.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella bivia JCVIHMP010]
Length = 184
Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats.
Identities = 70/177 (39%), Positives = 108/177 (61%), Gaps = 4/177 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +++ + F+D RG+F +++ + +G F+QDN S S G +RGLH+Q+
Sbjct: 8 IKGVWVIEPKIFKDDRGYFFESFRQDEFDRNVGYHVEFIQDNESKSS-YGVLRGLHYQQG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
++QAKLVR I G++ D+AVD+RR+S TYG +V++E+S N Q +IP GFAHGF+ L
Sbjct: 67 EFSQAKLVRVIKGKVIDVAVDLRRSSLTYGKYVAVELSDENKRQFFIPRGFAHGFLVLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ-NLPFLNQIDS 177
YKV + Y+ + ++ V W D++I I WP+ D +SEKD L + S
Sbjct: 127 EAIFTYKVDNIYAPQSEASVRWNDETIGIDWPI-DPKDVVLSEKDLTKGLSLAEAYS 182
>gi|73667779|ref|YP_303794.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanosarcina barkeri str.
Fusaro]
gi|72394941|gb|AAZ69214.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanosarcina barkeri str.
Fusaro]
Length = 183
Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats.
Identities = 73/179 (40%), Positives = 108/179 (60%), Gaps = 3/179 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQR 60
I + +L+ + FED RG+F ++Y+ K L L + FVQDN S S G IRGLH+Q
Sbjct: 7 KIKDLYMLEPKVFEDDRGYFLESYNKKTLDSLLEKEYTFVQDNESKSS-YGVIRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P++QAKL+R + G+++D+AVD+R+NSPT+ WV +E+SA N Q IP GFAHGF L
Sbjct: 66 GPFSQAKLIRVVQGKVYDVAVDLRKNSPTFLDWVGVELSAENKRQFLIPKGFAHGFSVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
YK ++Y E ++G+ + D S++I W + + + S KD L L + F
Sbjct: 126 ETAIFQYKCDEYYHPEAEAGIIYNDSSLNIDWKIKAEDIKT-SPKDLLLQKLEEAKMNF 183
>gi|22297999|ref|NP_681246.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermosynechococcus elongatus
BP-1]
gi|22294177|dbj|BAC08008.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermosynechococcus elongatus
BP-1]
Length = 182
Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 105/176 (59%), Gaps = 5/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V +L+ + F D RG+F ++Y+ + GL FVQDNHS S G +RGLH+Q
Sbjct: 7 LAIADVLLLELQVFRDQRGFFLESYNQRAFMAATGLAVTFVQDNHSAS-QQGVLRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ Q KL+R I G+IFD+AVD+RR+SPT G WV +SA N Q++IP GFAHGF
Sbjct: 66 HQ-HPQGKLIRVIEGKIFDVAVDLRRSSPTCGQWVGTWLSAENFQQLWIPPGFAHGFWVQ 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+V+YK TD+Y + + W D ++ I WP+ P +S KDQ N++
Sbjct: 125 SATAQVLYKTTDYYHPGDEHTLLWNDPTVGIQWPIDSE--PLLSAKDQQGKSFNEL 178
>gi|257060586|ref|YP_003138474.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 8802]
gi|256590752|gb|ACV01639.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 8802]
Length = 176
Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats.
Identities = 71/167 (42%), Positives = 108/167 (64%), Gaps = 3/167 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+N +++ ++ ED RG+F++++ K + GL VQ N SF+ GT+RG+H+Q
Sbjct: 7 KLNGAYLIELKRLEDERGFFARSWCQKEFLDYGLDANLVQCNISFNLKKGTLRGMHYQIA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY + KL+RC G I+D+ +D+ NS ++ W+ +E+SA N L IYIP GFAHGF TLE
Sbjct: 67 PYEEVKLLRCTQGAIYDVIIDLNPNSSSFKQWIGVELSAENRLMIYIPKGFAHGFQTLED 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+TEV Y++++FY E GV W D + I WP+ D+I +SEKD+
Sbjct: 127 HTEVFYQMSEFYHPECARGVRWNDPTFAIEWPIEDSI---ISEKDRQ 170
>gi|182415800|ref|YP_001820866.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Opitutus terrae PB90-1]
gi|177843014|gb|ACB77266.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Opitutus terrae PB90-1]
Length = 181
Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats.
Identities = 68/176 (38%), Positives = 101/176 (57%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ I++ + F D RG+F +++S + G+ FVQDN SFS GT+RG+H Q
Sbjct: 7 ELDGPLIIEPKVFGDQRGFFLESWSRPRYRAAGIALDFVQDNFSFS-RRGTLRGMHAQN- 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ Q KLV G ++D+ VD+RRNSPT+G W L +SA N Q ++P GFAHGF+
Sbjct: 65 PHPQGKLVSVWQGEVWDVVVDLRRNSPTFGRWFGLTLSAENKRQFWVPPGFAHGFVVTSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
YKVTD Y+ + + + D ++ I WP+ D P +S +D P L + S
Sbjct: 125 TALFHYKVTDAYAPQDEIAFRFDDPAVGIRWPVSD---PILSTRDTQAPLLRDVPS 177
>gi|126662749|ref|ZP_01733748.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Flavobacteria bacterium
BAL38]
gi|126626128|gb|EAZ96817.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Flavobacteria bacterium
BAL38]
Length = 183
Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats.
Identities = 66/176 (37%), Positives = 107/176 (60%), Gaps = 3/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I++ + +D RG+F ++++ ++ +G FVQDN SFS G +RGLH+Q
Sbjct: 7 KLKGCFIIEPKIIQDERGYFMESFNHNTFQKGVGQNVNFVQDNQSFSSK-GVLRGLHYQC 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AQAKLVR + G + D+AVD+R +S TYG + ++ +SA N +Q ++P GFAHGF+ L
Sbjct: 66 DEHAQAKLVRVLQGEVLDVAVDLRPDSETYGQYEAILLSAENQMQFFVPRGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ YK +FY+ E + G+ + D++I+I W L +S+KD+ LP L
Sbjct: 126 DSATFFYKCDNFYNKESEGGIIYNDETINIDWNFPLQEL-IISDKDKVLPNLQNAK 180
>gi|253568329|ref|ZP_04845740.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 1_1_6]
gi|251842402|gb|EES70482.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 1_1_6]
Length = 182
Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats.
Identities = 62/174 (35%), Positives = 101/174 (58%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V +++ + D RG+F + + + + FVQDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPNVYSDERGYFMEAFKKEEFEAKIGPVDFVQDNESKSS-FGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR + G++ D+AVD+RR+SPT+G VS +S N Q +IP GFAHGF+ L
Sbjct: 66 EYSQAKLVRVLKGKVLDVAVDLRRSSPTFGKHVSALLSEENKRQFFIPRGFAHGFVVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+YKV + Y+ + ++ + + D+++ I W +L +S KD+ +
Sbjct: 126 EAVFMYKVDNKYAPQAEASIVYNDETLGIDW-MLGESQMLLSPKDKEGMAFREA 178
>gi|303237108|ref|ZP_07323678.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella disiens
FB035-09AN]
gi|302482495|gb|EFL45520.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella disiens
FB035-09AN]
Length = 182
Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 105/176 (59%), Gaps = 3/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
NI V I++ + F D+RG+F + + K +G FVQDN S S G +RGLH+Q+
Sbjct: 7 NIEGVWIMEPKVFNDNRGYFYEVWKQSDFDKNIGKHVEFVQDNESKS-TFGVLRGLHYQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Y+QAKLVR + G++ D+AVD+R++SPT G +V E+S N Q +IP GFAHGF+ L
Sbjct: 66 GEYSQAKLVRVLKGKVLDVAVDLRKDSPTLGKYVMAELSDENKRQFFIPRGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YKV + Y+ + ++G+ W D++I I WP+ D SEKD + +
Sbjct: 126 DEAIFTYKVDNVYAPQSEAGIRWDDETIGIEWPI-DMNKVITSEKDNHAAAWKDAE 180
>gi|187926902|ref|YP_001893247.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia pickettii 12J]
gi|241665231|ref|YP_002983590.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia pickettii 12D]
gi|187728656|gb|ACD29820.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia pickettii 12J]
gi|240867258|gb|ACS64918.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia pickettii 12D]
Length = 197
Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats.
Identities = 70/190 (36%), Positives = 107/190 (56%), Gaps = 8/190 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V + + D RG+F++ + + L G Q NHS+S GT+RGLHFQ PP
Sbjct: 11 LAGVVEISRKVIGDHRGYFTRFFCADELAAAGFDSPIAQINHSYSAKRGTVRGLHFQYPP 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+A+ KLV C+ GR+FD+AVD+R SPT+ W ++E+SA + +P GFAHGF LE +
Sbjct: 71 HAEIKLVSCVRGRVFDVAVDLRAGSPTFLQWHAVELSAERHNSLLVPRGFAHGFQALEDD 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
E++Y + Y+ + G+ D + I WPL + S++D+N P L +
Sbjct: 131 CELLYLTSTPYAQAAEDGINPTDSRLGIAWPLD---ITECSDRDRNHPPLTNA-----FA 182
Query: 183 GLPLLSLNME 192
G+ L +LN E
Sbjct: 183 GIALRALNPE 192
>gi|302551386|ref|ZP_07303728.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces
viridochromogenes DSM 40736]
gi|302469004|gb|EFL32097.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces
viridochromogenes DSM 40736]
Length = 198
Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats.
Identities = 60/176 (34%), Positives = 94/176 (53%), Gaps = 4/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I+ + + + F DSRG F + + + L E G Q N S S GT+RG+HF
Sbjct: 5 LSISGAWVHEPKVFPDSRGSFHEWFKAPLFTEAVGHPLKLAQANMSVSAR-GTLRGIHFA 63
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V+C+ G + D+ VDIR SPT+G W + + + +Y+ G HGFM L
Sbjct: 64 DVPPSQAKYVKCVRGAVLDVVVDIRTGSPTFGQWELVRLDDRDHHALYLSEGLGHGFMAL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ V+Y ++ Y+ E + G+ D ++ I WP I P +S KD+ P L +
Sbjct: 124 TDDATVVYLCSEGYAPEREHGIQPLDPALGIDWPA--DITPLLSGKDEQAPTLAEA 177
>gi|258649191|ref|ZP_05736660.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella tannerae ATCC
51259]
gi|260850455|gb|EEX70324.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella tannerae ATCC
51259]
Length = 185
Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats.
Identities = 70/168 (41%), Positives = 105/168 (62%), Gaps = 2/168 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
IN V IL+ R FED+RG+F +T+ K +G + F+QDN S S G +RGLH+Q+
Sbjct: 8 INGVYILEPRVFEDARGYFMETWRKADFDKAIGYEVNFIQDNQSKSS-LGVLRGLHYQKG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+QAKLVR + G + D+AVD+RR+SPT+G +V++E+S N Q++IP GFAHGF
Sbjct: 67 DTSQAKLVRVLQGCVVDVAVDLRRSSPTFGKYVAVELSDKNQRQLFIPRGFAHGFQVTSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
YKV + YS ++ + + D ++ I WP+ D + +S+KD
Sbjct: 127 TAVFAYKVDNIYSPTTEASIRFDDPTLAIEWPIQDQNIIKLSDKDLQH 174
>gi|296242299|ref|YP_003649786.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermosphaera aggregans DSM
11486]
gi|296094883|gb|ADG90834.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermosphaera aggregans DSM
11486]
Length = 183
Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats.
Identities = 70/181 (38%), Positives = 107/181 (59%), Gaps = 6/181 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I + +++ +F D RG+F++ Y + FVQ N SFS G IRGLH+Q
Sbjct: 9 LDIPGIVLVEYTRFPDERGFFAELYKRTDFLANDIPYDFVQTNLSFS-RRGVIRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLV I+GR++D+AVDIR+ SP +G +V + + G ++IP GFAHGF LE
Sbjct: 68 KPMEQGKLVYVISGRVYDVAVDIRKGSPWFGKYVGVFL--EPGYALWIPPGFAHGFQALE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+Y VT YS +H+ + W D+ I + WP+ + + +SEKD+ P L + ++ FE
Sbjct: 126 D-AYFLYLVTKEYSPQHERCIKWDDQEIGVQWPVKENV--ILSEKDKKCPPLREAETNFE 182
Query: 181 Y 181
Y
Sbjct: 183 Y 183
>gi|119357790|ref|YP_912434.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium phaeobacteroides
DSM 266]
gi|119355139|gb|ABL66010.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium phaeobacteroides
DSM 266]
Length = 193
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 75/182 (41%), Positives = 107/182 (58%), Gaps = 3/182 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I + F D RG+F +T+ S L+++ + FVQDN S S G +RGLHFQ+PP
Sbjct: 8 IPDVLIFEPVVFGDERGYFLETFRSDLIEKHIGRVDFVQDNESKSG-YGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q+KLVR + GR+ D+AVD+RR SP YG V+ + ++IP GFAHGF+ L
Sbjct: 67 FTQSKLVRVVKGRVLDVAVDLRRGSPWYGKSVTCLLDDKRRSMLWIPKGFAHGFVVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
+YK +Y+ E+D GV W D+++ I W L + + VS KD LP +D F Y+
Sbjct: 127 AVFVYKCDAYYAPEYDGGVRWNDETLGIDWQLSSSDI-RVSGKDALLPAFGDVDC-FAYE 184
Query: 183 GL 184
Sbjct: 185 AF 186
>gi|332519462|ref|ZP_08395929.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lacinutrix algicola 5H-3-7-4]
gi|332045310|gb|EGI81503.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lacinutrix algicola 5H-3-7-4]
Length = 182
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 108/176 (61%), Gaps = 3/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ IL+ F DSRG+F +++++K E + VF+QDN SFS G +RGLH+Q
Sbjct: 7 KLKDCFILEPNVFNDSRGYFFESFNAKTFIEHVNSKTVFLQDNESFS-TKGVLRGLHYQT 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
YAQAKLVR + G + D+AVD+R++S T+G V++E+SA N Q+++P GFAHGF+ L
Sbjct: 66 GEYAQAKLVRVVQGSVLDVAVDLRQDSKTFGQHVAVELSAENKKQLFVPRGFAHGFIVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YK ++Y+ ++G+ + DK + I W L ++ VS+KD LP L
Sbjct: 126 DTAIFSYKCDNYYNKASEAGIIYNDKDLKIDWKLNESDF-LVSDKDLVLPTLKNAK 180
>gi|291566907|dbj|BAI89179.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Arthrospira platensis
NIES-39]
Length = 178
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 3/167 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ I++ +D RG+FS+++ K E GL VQ N SF+ GT+RG+H+Q
Sbjct: 7 ELKGAYIVELEPIQDERGFFSRSWCQKEFAERGLTSNLVQCNISFNRHKGTLRGMHYQAK 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ +AK+VRC G I+D+ +DIR +S T+ WV++E++A N +YIP G AHGF TL
Sbjct: 67 PHEEAKVVRCTMGAIYDVIIDIRPDSATFKQWVAVELTAENRKMLYIPEGMAHGFQTLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
NTEV Y++++FY E G+ W D ITW P +S+KD+N
Sbjct: 127 NTEVFYQMSEFYHPESARGLRWDDPRFGITW---IHNNPIMSDKDKN 170
>gi|315502242|ref|YP_004081129.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Micromonospora sp. L5]
gi|315408861|gb|ADU06978.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Micromonospora sp. L5]
Length = 202
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 5/178 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I + R+ D+RG F + Y L E G Q N S S G +RG+HF
Sbjct: 6 LSIEGAWEVTPRRHGDARGLFLEWYRFDRLAEAVGRPLRLAQANLSVSAR-GVVRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G + D+ VD+R SPTYG W ++ + + +Y+ G HGF L
Sbjct: 65 DVPPGQAKYVTCVRGAVLDVVVDVRAGSPTYGRWEAVRLDDTDRRAVYLAEGLGHGFCAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ + Y + Y+ + V D + I WP P +SE+D P L + +
Sbjct: 125 TDDATLSYLCSATYNPAAEHTVHPLDPDLGIDWP---AATPLLSERDAAAPRLAEARA 179
>gi|220910533|ref|YP_002485844.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 7425]
gi|219867144|gb|ACL47483.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 7425]
Length = 181
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 65/172 (37%), Positives = 105/172 (61%), Gaps = 3/172 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ I+ + D RG+F++TY ++ E GL+ Q N S+++ GT+RG+H+Q P
Sbjct: 8 LKGAFIIDVEQRWDDRGFFARTYCAQEFLEQGLKPTIAQTNISYNYQKGTLRGMHYQTSP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ K+VRC G I+D+ +D+R +SPTY + +E++A N +YIP FAHG+ TL +
Sbjct: 68 ATEVKVVRCTWGAIYDVIIDMRPDSPTYLSHIGVELTAENHRALYIPEMFAHGYQTLTDD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
EV Y V++FY+ ++ GV + D +I I WPL + +S+KD + P L Q
Sbjct: 128 AEVSYLVSEFYAPGYERGVRYDDPAIGIAWPLPVKV---ISDKDAHWPLLQQ 176
>gi|124025562|ref|YP_001014678.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prochlorococcus marinus str.
NATL1A]
gi|123960630|gb|ABM75413.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prochlorococcus marinus str.
NATL1A]
Length = 193
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 76/175 (43%), Positives = 110/175 (62%), Gaps = 3/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I +L F D RG+F ++++ K+ LG + F QDN S S G +RGLH+Q
Sbjct: 12 EIEGPLLLTPNVFNDERGYFYESWNEKIFNSILGKEVRFKQDNISHSIK-GVLRGLHYQL 70
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P +Q KLVRC G IFD+AVDIR+ S T+G W+S E+S+ N Q++IP GFAHGF+T+
Sbjct: 71 KPESQGKLVRCSYGSIFDVAVDIRKESKTFGKWLSAELSSENKKQLWIPVGFAHGFLTIS 130
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD-TILPSVSEKDQNLPFLNQ 174
+ EV YK T F++ + + + W DK + ITWP+ + P ++EKD + PFL +
Sbjct: 131 DHAEVNYKATGFWNKDCEHSIRWNDKDLKITWPIKEFGFEPVINEKDASAPFLKE 185
>gi|19550671|gb|AAL91483.1|AF479753_4 putative dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC
[Lactobacillus gasseri]
Length = 202
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 73/189 (38%), Positives = 99/189 (52%), Gaps = 18/189 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ D RG+F +T++ + + E G FVQDN S S G +RGLHFQ+
Sbjct: 12 GIEGLAVITPTVHGDDRGYFMETFNQRDMMEAGFSINFVQDNQS-SSTKGVLRGLHFQKK 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G +FD+AVD+R S TYG W +E++A N Q IP GFAHGF+ L
Sbjct: 71 -YPQIKLVRAVRGSVFDVAVDLRSESKTYGKWYGVELTAENKKQFLIPQGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YKV DF+ + G+AW D I I WP L D +++E+
Sbjct: 130 VAEFCYKVNDFWHPNDEGGMAWNDPEIGIEWPHLKGDYPGSPDASGYTLDDGTKLNMAER 189
Query: 166 DQNLPFLNQ 174
DQ L
Sbjct: 190 DQEWKGLKD 198
>gi|302865678|ref|YP_003834315.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Micromonospora aurantiaca
ATCC 27029]
gi|302568537|gb|ADL44739.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Micromonospora aurantiaca
ATCC 27029]
Length = 202
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 5/178 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I + R+ D+RG F + Y L E G Q N S S G +RG+HF
Sbjct: 6 LSIEGAWEVTPRRHGDARGLFLEWYRFDRLAEAVGRPLRLAQANLSVSAR-GVVRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G + D+ VD+R SPTYG W ++ + + +Y+ G HGF L
Sbjct: 65 DVPPGQAKYVTCVRGAVLDVVVDVRAGSPTYGRWEAVRLDDTDRRAVYLTEGLGHGFCAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ + Y + Y+ + V D + I WP P +SE+D P L + +
Sbjct: 125 TDDATLSYLCSATYNPAAEHTVHPLDPDLGIDWP---AATPLLSERDAAAPRLAEARA 179
>gi|320107280|ref|YP_004182870.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Terriglobus saanensis SP1PR4]
gi|319925801|gb|ADV82876.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Terriglobus saanensis SP1PR4]
Length = 199
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 75/182 (41%), Positives = 105/182 (57%), Gaps = 8/182 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V++++ D RGWF++ ++++ +E GL FVQDN S S G +RGLH+Q
Sbjct: 8 LRDVKLIEPTLHRDGRGWFAEAFNARSFREQGLPSDFVQDNQSMS-QRGVLRGLHYQLGQ 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEI----SANNGLQIYIPTGFAHGFMT 118
Q KLVRC++G I+D+AVD+RR SP +G W + S ++IP GF HGF+
Sbjct: 67 P-QGKLVRCVSGHIWDVAVDLRRTSPDFGKWAGFHLRPLTSEGKLQMLWIPEGFGHGFLV 125
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQID 176
L E++YK T+ Y + D V W D I I WPL LD + P VS KD PFLN +
Sbjct: 126 LSETAELLYKTTNHYFPQGDRAVRWNDPEIAIEWPLAELDGLEPIVSAKDTVAPFLNSAE 185
Query: 177 SP 178
P
Sbjct: 186 LP 187
>gi|332663275|ref|YP_004446063.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Haliscomenobacter hydrossis
DSM 1100]
gi|332332089|gb|AEE49190.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Haliscomenobacter hydrossis
DSM 1100]
Length = 182
Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats.
Identities = 67/172 (38%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + + + + D RG+F + +++ K G+ FVQDN + S G +RGLH+Q P
Sbjct: 8 IPDLLVFEPTVWADERGYFFEAFNAHTFKAAGIDVQFVQDNQARS-TFGVLRGLHYQLAP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YAQ KLVR + G + D+ VDIR SP YG S+ +SA N Q+Y+P GFAHG++ L
Sbjct: 67 YAQGKLVRVLEGEVLDVVVDIRPESPAYGQSYSIRLSAANKKQLYVPRGFAHGYLVLSPT 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E YK ++Y+ H+ G+ + D ++I W + D +SEKDQ LP +
Sbjct: 127 AEFFYKCDNYYAKAHEGGIHYNDPQLNIDWEI-DLSQVILSEKDQVLPNFGE 177
>gi|307564467|ref|ZP_07627008.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella amnii CRIS 21A-A]
gi|307346827|gb|EFN92123.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella amnii CRIS 21A-A]
Length = 184
Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats.
Identities = 75/178 (42%), Positives = 112/178 (62%), Gaps = 4/178 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
NI V ++K + F+D RG+F +++ K +G F+QDN S S G +RGLH+Q+
Sbjct: 7 NIKGVWLIKPKIFKDDRGYFFESFRQDEFDKNIGHHVEFIQDNESKSS-YGVLRGLHYQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
++QAKLVR I G++ D+AVD+RR+S TYG +V++E+S N Q++IP GFAHGF+ L
Sbjct: 66 GEFSQAKLVRIITGKVIDVAVDLRRSSTTYGKYVAVELSEENKCQLFIPRGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ-NLPFLNQIDS 177
YKV + Y+ + ++ + W DK+I I WP+ DT +SEKD N L + S
Sbjct: 126 KEAIFSYKVDNIYAPQSEASIKWNDKTIGIEWPI-DTKDIVLSEKDLNNALSLEEAYS 182
>gi|209883772|ref|YP_002287629.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oligotropha carboxidovorans
OM5]
gi|209871968|gb|ACI91764.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oligotropha carboxidovorans
OM5]
Length = 188
Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats.
Identities = 67/171 (39%), Positives = 106/171 (61%), Gaps = 3/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ ++ K D RG+F++ + + + GL+ FVQ N+S + GT+RGLH+Q PP
Sbjct: 8 LRGACTIELEKRGDDRGFFARMFCEREFADAGLETRFVQVNNSLTAKRGTLRGLHYQLPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
A+ K+VRC+ G ++D+ VD+R +SPT+ W E++A+N +Y+P GFAH F+TL +
Sbjct: 68 AAEVKVVRCVRGALYDVIVDLRPDSPTFRKWFGAELTADNRTMMYVPRGFAHAFLTLTDD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
E +Y V+ FYS E++ GV + D + I WP+ VS+KD+N P N
Sbjct: 128 AEAMYLVSAFYSPENERGVRYNDPAFSIAWPVDP---LEVSDKDRNWPDFN 175
>gi|254776839|ref|ZP_05218355.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 201
Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats.
Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 2/178 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + + D+RG F + + K + G + Q N S S G +RGLHF
Sbjct: 6 LKVPGAWEITPTVHGDARGHFFEWLTDKGFRSFAGHRLDVRQANCSVSA-AGVLRGLHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P +QAK V C+ G +FD+ VDIR SPT+G W S+ + IYI G HGF+ L
Sbjct: 65 QVPPSQAKYVTCVRGSVFDVVVDIRVGSPTFGQWDSVLLDDAEHRTIYISEGLGHGFLAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ N+ V+Y + Y+ + + D ++ I WPL+ P++SE+D P L ++ +
Sbjct: 125 QDNSTVMYLCSAEYNPGREHTICATDPALGIDWPLVAGAAPTLSERDAAAPSLEEVRA 182
>gi|29346238|ref|NP_809741.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides thetaiotaomicron
VPI-5482]
gi|298385615|ref|ZP_06995173.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 1_1_14]
gi|29338133|gb|AAO75935.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides thetaiotaomicron
VPI-5482]
gi|298261756|gb|EFI04622.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 1_1_14]
Length = 182
Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats.
Identities = 62/174 (35%), Positives = 100/174 (57%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V +++ + D RG+F + + + + FVQDN S S G +RGLH+Q+
Sbjct: 7 EIDGVWLIEPNVYSDERGYFMEAFKKEEFEAKIGPVDFVQDNESKSS-FGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR + G++ D+AVD+RR+SPT+G VS +S N Q +IP GFAHGF+ L
Sbjct: 66 EYSQAKLVRVLKGKVLDVAVDLRRSSPTFGKHVSALLSEENKRQFFIPRGFAHGFVVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+YKV + Y+ + ++ + + D+++ I W +L +S KD+
Sbjct: 126 EAVFMYKVDNKYAPQAEASIVYNDETLGIDW-MLGESQMLLSPKDKEGMAFRDA 178
>gi|188994411|ref|YP_001928663.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas gingivalis ATCC
33277]
gi|47080240|dbj|BAD18849.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas gingivalis]
gi|188594091|dbj|BAG33066.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas gingivalis ATCC
33277]
Length = 196
Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats.
Identities = 74/192 (38%), Positives = 114/192 (59%), Gaps = 2/192 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V IL+ R F D RG+F +++S + ++ FVQDN S S G +RGLHFQ+P
Sbjct: 7 EIPEVVILEPRLFRDDRGYFFESFSRQEIETGIRPINFVQDNESAS-RYGVLRGLHFQKP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+KLVR + G + D AVDIR SPT+G +V++E+S N Q++IP GFAHGF+ L
Sbjct: 66 PHAQSKLVRVVRGCVIDYAVDIRFGSPTFGKYVAVELSDTNFRQLFIPRGFAHGFVVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK ++Y+ + + +AW D ++DI W + + +S KDQ P ++ S ++
Sbjct: 126 EVVFQYKCDNYYAPQSEGAIAWNDSNLDIDWKIPVEDI-ILSAKDQANPSWTELISSEDF 184
Query: 182 DGLPLLSLNMER 193
L + ++
Sbjct: 185 RNLFPYNQDLYE 196
>gi|220903819|ref|YP_002479131.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219868118|gb|ACL48453.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 179
Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats.
Identities = 67/173 (38%), Positives = 99/173 (57%), Gaps = 5/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V ++K R + D RG+F +T+ + G+ FVQDNHS S G +RGLHFQ+
Sbjct: 8 LAGVMLIKPRVWGDRRGYFVETWQHERYAAAGIDAAFVQDNHSMS-TYGILRGLHFQKT- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV GR+FD+AVDIR SPT+G W +E++ +N Q+++P G AHGF
Sbjct: 66 RPQGKLVSVSLGRVFDVAVDIRPGSPTFGQWYGVELTQDNQWQLWVPPGMAHGFAVTSQV 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK TD+Y E + G+ W D + + WP+ P +S+KD++ P +
Sbjct: 126 AHFHYKCTDYYCPEDEGGIRWNDPDLAVAWPV---AQPLLSDKDRHTPSWREF 175
>gi|313206230|ref|YP_004045407.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Riemerella anatipestifer DSM
15868]
gi|312445546|gb|ADQ81901.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Riemerella anatipestifer DSM
15868]
Length = 181
Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats.
Identities = 73/171 (42%), Positives = 108/171 (63%), Gaps = 4/171 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ I++ FED RG+F + ++ K ++L G+ FVQDN S S G +RGLH Q+
Sbjct: 8 LKDCYIIEPTIFEDERGYFYEKFNEKKFEDLTGMNGHFVQDNISKSS-YGVLRGLHLQKG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQAKLV C+ G+++D+AVD+R +SP++G W +E++A N LQ Y+P GFAHGF L
Sbjct: 67 EHAQAKLVSCLEGKVWDVAVDLREDSPSFGKWYGVELTAENKLQFYVPRGFAHGFAVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ-NLPF 171
YK +FY+ E + G+ W D + I W L +T + +SEKD+ LPF
Sbjct: 127 MAVFAYKCDNFYNKESEGGILWNDADLAIDWKLDETDV-ILSEKDKVQLPF 176
>gi|222087846|ref|YP_002546384.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Agrobacterium radiobacter
K84]
gi|221725294|gb|ACM28450.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Agrobacterium radiobacter
K84]
Length = 183
Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats.
Identities = 76/179 (42%), Positives = 102/179 (56%), Gaps = 5/179 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V +L+ R+F D RG F++T+ +ELG FVQDN S S G +RGLH+Q P
Sbjct: 10 IPDVLLLEHREFGDDRGSFTETFRDSAFQELGFP-QFVQDNQSRSSK-GVVRGLHYQVNP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
A KLVRC+ GRIFD+AVD+R SPTYG W E++ + Y+P GFAHGFM LE +
Sbjct: 68 NAVGKLVRCVHGRIFDVAVDLRLGSPTYGKWTGTELAGTDNHMFYVPEGFAHGFMALEDD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
T V Y+ T ++ + + W D + I WP + +S KD N +D F Y
Sbjct: 128 TLVSYRQTGYWDAASERSLLWNDPDVAIDWP---KLAVLLSPKDANATRFADVDHNFRY 183
>gi|332971548|gb|EGK10498.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Kingella kingae ATCC 23330]
Length = 187
Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats.
Identities = 70/174 (40%), Positives = 103/174 (59%), Gaps = 4/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I +++L+ + + D RG+F +T+ ++ FVQ+NHS S +RGLH+Q
Sbjct: 14 SILDIKLLEPQIWRDERGFFMETFRDDWFRQHVADCAFVQENHSQSSK-NVLRGLHYQTE 72
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVR +AG IFD+AVD+RR+SPT+G WV+ +S +N Q++IP GFAHGF L
Sbjct: 73 N-AQGKLVRAVAGCIFDVAVDLRRSSPTFGQWVAEILSGDNARQMWIPGGFAHGFYVLSD 131
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
V YK TD+Y+ + + W D ++ I W L P +S KDQ L +
Sbjct: 132 GAAVAYKCTDYYNPSAEHTLLWNDPAVSIDWRLNGK--PVLSPKDQAGKRLADL 183
>gi|327184175|gb|AEA32622.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus amylovorus GRL
1118]
Length = 202
Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats.
Identities = 73/189 (38%), Positives = 99/189 (52%), Gaps = 18/189 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ D RG+F +T++ + + E G FVQDN S S G +RGLHFQ+
Sbjct: 12 GIEGLAVITPTVHGDDRGYFMETFNQRDMMEAGFSINFVQDNQS-SSTKGVLRGLHFQKH 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G +FD+AVD+R S TYG W +E++A N Q IP GFAHGF+ L
Sbjct: 71 -YPQVKLVRAVRGSVFDVAVDLRSESKTYGKWYGVELTAENKKQFLIPQGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YKV DF+ + G+AW D I I WP L D +++E+
Sbjct: 130 VAEFCYKVNDFWHPNDEGGMAWNDPEIGIEWPHLKGDYPGSADASGYTLDDGTKLNMAER 189
Query: 166 DQNLPFLNQ 174
DQ L
Sbjct: 190 DQEWKGLKD 198
>gi|88800557|ref|ZP_01116119.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Reinekea sp. MED297]
gi|88776702|gb|EAR07915.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Reinekea sp. MED297]
Length = 185
Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats.
Identities = 67/174 (38%), Positives = 97/174 (55%), Gaps = 3/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V +L + D RG+F +T+ +E FVQDNHS S G +RGLH+Q
Sbjct: 7 SIPDVVLLTPEVYGDERGFFMETFRQSEFEEHCGNYQFVQDNHSKS-KKGILRGLHYQLE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR G +FD+AVD+R++SPT+G WV L ++ +N +++P GFAHGF
Sbjct: 66 -KPQGKLVRVTKGEVFDVAVDMRQSSPTFGKWVGLYLNESNKQMLWVPPGFAHGFYVTSD 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E YK TD+YS + + W D S+ I WP + P ++EKD ++
Sbjct: 125 EAEFQYKCTDYYSPGDEYSLFWSDSSLAIGWPGIGG-CPQLAEKDAQGKSFIEL 177
>gi|24214359|ref|NP_711840.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira interrogans
serovar Lai str. 56601]
gi|45657974|ref|YP_002060.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
gi|5814318|gb|AAD52186.1|AF144879_25 unknown [Leptospira interrogans]
gi|17940024|gb|AAL49431.1|AF316500_18 RmlC [Leptospira interrogans]
gi|24195292|gb|AAN48858.1|AE011344_2 dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira interrogans
serovar Lai str. 56601]
gi|1666505|gb|AAB47840.1| RmlC [Leptospira interrogans]
gi|45601215|gb|AAS70697.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
gi|289450993|gb|ADC93910.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira interrogans
serovar Canicola]
gi|289451077|gb|ADC93993.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira interrogans
serovar Autumnalis]
gi|289451156|gb|ADC94071.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira interrogans
serovar Grippotyphosa]
Length = 186
Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats.
Identities = 74/181 (40%), Positives = 109/181 (60%), Gaps = 2/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I +++ + F D RG+F +T+ + + ++ + F QDNHS S G +RG+H Q P
Sbjct: 7 QIEGPVLIEPKVFGDERGFFLETFKASIFEKENIPFQFSQDNHSRSSR-GVLRGMHLQIP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY Q KLVR + G++ D+ VD+R SP YG W+S+E+S N ++P GFAHGF+TLE
Sbjct: 66 PYDQGKLVRVVRGKVIDVVVDVRVGSPNYGKWLSVELSEENKNIFWVPPGFAHGFLTLED 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP-LLDTILPSVSEKDQNLPFLNQIDSPFE 180
T+ +YKVT YS +++ G+ W D ++ I W L VS++DQ PF SPF
Sbjct: 126 KTDFLYKVTGEYSPQNEVGIRWDDPALGIPWKTWLSDSEFIVSQRDQVTPFFADFKSPFV 185
Query: 181 Y 181
Y
Sbjct: 186 Y 186
>gi|254303462|ref|ZP_04970820.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
gi|148323654|gb|EDK88904.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
Length = 191
Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats.
Identities = 74/179 (41%), Positives = 113/179 (63%), Gaps = 5/179 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ + FEDSRG F ++Y+ K++G+ ++FVQDNHS S G +RGLHFQ+
Sbjct: 8 EIENLFIIEPQIFEDSRGCFFESYNYNTFKKIGIDNIFVQDNHSKSLK-GVLRGLHFQKE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKL+ + G I DI VD+R+NS T+G + ++EI+ NN ++IP GFAHGF+TLE
Sbjct: 67 DYSQAKLISVLKGGILDIVVDLRKNSKTFGKYFAMEINENNKKMLFIPKGFAHGFLTLED 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPFLNQID 176
TE+ YK +FY+ + + G+ W D+ ++I W D +SEKD+ +
Sbjct: 127 GTEIFYKCDNFYNPQSEGGIIWNDRDLNIDWNFKKYNIDKNELIISEKDKKNISFKEYK 185
>gi|298353050|gb|ADI77028.1| RmlC [Escherichia coli]
Length = 182
Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats.
Identities = 73/176 (41%), Positives = 112/176 (63%), Gaps = 5/176 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I ++ F DSRG+F ++++ + + + + VF QDN S S G +RGLHFQ
Sbjct: 8 IQDAIVITPEVFADSRGYFFESFNYRDFQRIINREIVFCQDNQSLS-HKGVVRGLHFQVN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P QAKLVRCI G ++D+ VD+R+NSP+Y CW + +S++N Q++IP G AHGF++LE
Sbjct: 67 PKEQAKLVRCINGSVYDVIVDLRKNSPSYKCWFGILLSSDNKKQLWIPEGCAHGFISLED 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
NTE++YK T+FYS +H+ + W D + I+WP +S+KD+N + +S
Sbjct: 127 NTELLYKTTEFYSPDHERCIIWNDPDLGISWP---EYSYIISDKDKNGISFAEWES 179
>gi|218248087|ref|YP_002373458.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 8801]
gi|218168565|gb|ACK67302.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanothece sp. PCC 8801]
Length = 176
Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats.
Identities = 70/167 (41%), Positives = 106/167 (63%), Gaps = 3/167 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+N +++ ++ ED RG+F++++ K + GL VQ N SF+ GT+RG+H+Q
Sbjct: 7 KLNGAYLIELKRLEDERGFFARSWCQKEFLDYGLDANLVQCNISFNLKKGTLRGMHYQIA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY + KL+RC G I+D+ +D+ S ++ W+ +E+SA N L IYIP GFAHGF TLE
Sbjct: 67 PYEEVKLLRCTQGAIYDVIIDLNLESSSFKQWIGVELSAENRLMIYIPKGFAHGFQTLED 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+TEV Y++++FY E GV W D + I WP+ D P +SEKD+
Sbjct: 127 HTEVFYQMSEFYHPECARGVRWNDPTFAIEWPIED---PIISEKDRQ 170
>gi|37521774|ref|NP_925151.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gloeobacter violaceus PCC
7421]
gi|35212772|dbj|BAC90146.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gloeobacter violaceus PCC
7421]
Length = 182
Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats.
Identities = 62/172 (36%), Positives = 101/172 (58%), Gaps = 3/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ I++ + ED RG+F++T+ ++ + GL F Q N S++ GT+RGLH+Q
Sbjct: 7 KLAGAWIIELERREDERGFFARTFCAREFEAQGLAGTFAQSNLSYNHRAGTLRGLHYQVA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P + KLVRC G I+D+ VD+R S TY + +E+S +N +Y+P FAHG+ L
Sbjct: 67 PALETKLVRCTRGAIYDVIVDLRPGSRTYLQHIGVELSEDNRWALYVPGLFAHGYQALTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
EV+Y+V +FY+ ++ G+ + D ++ I WPL ++ +S KD P L
Sbjct: 127 GAEVLYQVGEFYTPGYERGLRYDDPALAIDWPLPVSV---LSTKDNGWPLLA 175
>gi|254294496|ref|YP_003060519.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hirschia baltica ATCC 49814]
gi|254043027|gb|ACT59822.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hirschia baltica ATCC 49814]
Length = 176
Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats.
Identities = 72/171 (42%), Positives = 105/171 (61%), Gaps = 3/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +L+ K D RG+F++T+ + +E G++ FVQ N SFS + GT+RG+H Q P
Sbjct: 8 LQDAYLLEVEKRGDDRGFFTRTFCAAEFREQGIEISFVQQNSSFSAEKGTLRGMHKQNAP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+A+ KLVRCI G I DI VD+R S T+ W + E+S N ++ +P GF HGF TLE N
Sbjct: 68 HAEDKLVRCIKGSIVDIIVDLRPESSTFKKWEAFELSETNRKELLVPRGFGHGFQTLEDN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
EV Y V+++Y+ E +SGV D + I WPL + +S+KD+N P
Sbjct: 128 VEVTYLVSNYYTPEAESGVRHDDPAFGIEWPLP---ITVMSDKDRNWPLFE 175
>gi|148557436|ref|YP_001265018.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingomonas wittichii RW1]
gi|148502626|gb|ABQ70880.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingomonas wittichii RW1]
Length = 182
Score = 241 bits (615), Expect = 5e-62, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 107/176 (60%), Gaps = 3/176 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ R+++ D RG F++T+ + + GL FVQ N S S GTIRG+H+QRPP
Sbjct: 8 LKDARLIEVEPRGDERGMFARTFCRQEFEAHGLLTDFVQQNMSVSAQAGTIRGMHYQRPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ +AKLVRC+ GRI D+ VD+R SPTY E+SA+N Q+Y+P GFAH F TL +
Sbjct: 68 FTEAKLVRCVRGRILDVIVDMRSGSPTYLRHEGFELSADNRRQLYVPPGFAHSFQTLVDD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
EV Y VT Y+ + + GV + D + I+WPL T ++S+KD P +++ P
Sbjct: 128 IEVSYLVTAPYTPDAEGGVRYSDPLLAISWPLPVT---TISDKDAGWPLIDRSAEP 180
>gi|87123105|ref|ZP_01078956.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. RS9917]
gi|86168825|gb|EAQ70081.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. RS9917]
Length = 196
Score = 241 bits (615), Expect = 5e-62, Method: Composition-based stats.
Identities = 74/173 (42%), Positives = 107/173 (61%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ +L ++F D RGWF ++++ + +G FVQDNHS S G +RGLH+Q P
Sbjct: 14 LSGPLLLTPQRFGDDRGWFFESWNQRRFDAAVGEHVAFVQDNHSRSSQ-GVLRGLHYQLP 72
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
QAKLVR GRIFD+ VD+R +SP+ G W +E+SA+N Q+++P GFAHGF+TL
Sbjct: 73 AAPQAKLVRASVGRIFDVVVDLRTSSPSNGQWAGVELSADNQQQLWVPEGFAHGFLTLSA 132
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL--DTILPSVSEKDQNLPFL 172
EV YK ++S E + + W D ++ I+WPL + S+SEKD P L
Sbjct: 133 VAEVQYKTRGYWSREQERAIRWDDPALAISWPLENLEGTAVSLSEKDAQAPTL 185
>gi|218558919|ref|YP_002391832.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli S88]
gi|160419866|emb|CAN87671.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli S88]
gi|218365688|emb|CAR03424.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Escherichia coli S88]
Length = 180
Score = 241 bits (615), Expect = 5e-62, Method: Composition-based stats.
Identities = 68/174 (39%), Positives = 100/174 (57%), Gaps = 5/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ I++ + F DSRG+F + + K ++G+ + FVQDN S S +RGLHFQ+
Sbjct: 8 LAGCVIIEPKVFGDSRGFFLEAWHQKKYHDIGITEAFVQDNRSRSAR-NVLRGLHFQKNN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV I+G +FD+AVD+R S ++G V + +S + QIYIP GFAHGF L
Sbjct: 67 P-QGKLVSVISGEVFDVAVDLRPGSSSFGKHVGVILSGDKNNQIYIPPGFAHGFCVLSEY 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ YK TDFY + G+ W DK ++I WP+ +P +S KD L ++
Sbjct: 126 ADFHYKCTDFYDPTDEGGIIWNDKELNIQWPID---MPIMSSKDNALISFSEFK 176
>gi|148238439|ref|YP_001223826.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. WH 7803]
gi|147846978|emb|CAK22529.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. WH 7803]
Length = 205
Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats.
Identities = 77/187 (41%), Positives = 110/187 (58%), Gaps = 13/187 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLK----ELGLQ------DVFVQDNHSFSFDCGT 52
+ ++ R F D RG+F ++++ + + E G+ VF QDNHS S G
Sbjct: 14 LPGPLLITPRVFADERGFFYESWNERRFRAELIEAGVPAAEAEALVFRQDNHSRSSR-GV 72
Query: 53 IRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGF 112
+RGLH+Q PP Q KLVRC G IFD+AVD+RR SPTYG WV E+SA N Q+++P GF
Sbjct: 73 LRGLHYQLPPEPQGKLVRCSLGAIFDVAVDLRRASPTYGQWVGAELSAANHQQLWVPVGF 132
Query: 113 AHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL--DTILPSVSEKDQNLP 170
AHGF+TL EV YK + F++ + + + W D ++ I WPL P ++ KD + P
Sbjct: 133 AHGFLTLTDVAEVQYKASGFWNRDCERSLRWDDSALAIAWPLEQAGVSEPLLAPKDADAP 192
Query: 171 FLNQIDS 177
L +D+
Sbjct: 193 LLASLDA 199
>gi|296168674|ref|ZP_06850423.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295896583|gb|EFG76224.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 203
Score = 240 bits (614), Expect = 6e-62, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 2/178 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + DSRG F + + E G + Q N S S G +RGLHF
Sbjct: 7 LAIPGAWEITPTIHGDSRGLFFEWLTDHGFTEFAGHRLDVRQANCSVSS-AGVLRGLHFA 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P +QAK V C+ G +FD+ VDIR SPT+G W S+ + + IY+ G AHGF+ L
Sbjct: 66 QLPPSQAKYVTCVRGSVFDVVVDIREGSPTFGQWDSVLLDDKDRRTIYLSEGLAHGFLAL 125
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ ++ V+Y + Y+ + + + D +I + WPL++ P++S++D P ++ +
Sbjct: 126 QDDSTVMYLCSAEYNPQRERTICATDPAIGVDWPLVNGAAPTLSDRDAAAPMFEEVRA 183
>gi|187476639|ref|YP_784662.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Bordetella avium 197N]
gi|115421225|emb|CAJ47730.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Bordetella avium 197N]
Length = 190
Score = 240 bits (614), Expect = 6e-62, Method: Composition-based stats.
Identities = 74/187 (39%), Positives = 109/187 (58%), Gaps = 10/187 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE----LGLQDV--FVQDNHSFSFDCGTIRGL 56
+ V +L + F D+RGWF++ + + + LGL FVQ+NHS S G +RGL
Sbjct: 8 LPGVVLLDPKVFADARGWFAERFRQDVFEAGLRALGLPVPAPFVQENHSCSRQ-GVLRGL 66
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H+Q P+AQ KLV G IFD+ VDIR +SPT+G W + +SA N ++IP G+AHGF
Sbjct: 67 HYQLAPHAQGKLVSVAVGEIFDVTVDIRPDSPTFGRWQGVTLSAVNRRSLWIPAGYAHGF 126
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
++L +EV YK T +YS H+ + W D + I WP + +SE+D+ P L +
Sbjct: 127 LSLSGPSEVHYKTTAYYSPAHERSLRWNDPFMGIVWPAE---VSLLSERDERAPGLQEAL 183
Query: 177 SPFEYDG 183
+ + DG
Sbjct: 184 ASGQLDG 190
>gi|116629771|ref|YP_814943.1| dTDP-4-dehydrorhamnose 3,5-epimerase related enzyme [Lactobacillus
gasseri ATCC 33323]
gi|300361535|ref|ZP_07057712.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus gasseri JV-V03]
gi|311110586|ref|ZP_07711983.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus gasseri MV-22]
gi|116095353|gb|ABJ60505.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus gasseri ATCC
33323]
gi|300354154|gb|EFJ70025.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus gasseri JV-V03]
gi|311065740|gb|EFQ46080.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus gasseri MV-22]
Length = 202
Score = 240 bits (614), Expect = 7e-62, Method: Composition-based stats.
Identities = 72/189 (38%), Positives = 99/189 (52%), Gaps = 18/189 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ D RG+F +T++ + + + G FVQDN S S G +RGLHFQ+
Sbjct: 12 GIEGLAVITPTVHGDDRGYFMETFNQRDMMDAGFSINFVQDNQS-SSTKGVLRGLHFQKK 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G +FD+AVD+R S TYG W +E++A N Q IP GFAHGF+ L
Sbjct: 71 -YPQIKLVRAVRGSVFDVAVDLRSESKTYGKWYGVELTAENKKQFLIPQGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YKV DF+ + G+AW D I I WP L D +++E+
Sbjct: 130 VAEFCYKVNDFWHPNDEGGMAWNDPEIGIEWPHLKGDYPGSPDASGYTLDDGTKLNMAER 189
Query: 166 DQNLPFLNQ 174
DQ L
Sbjct: 190 DQEWKGLKD 198
>gi|289451236|gb|ADC94150.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira interrogans
serovar Hebdomadis]
Length = 186
Score = 240 bits (614), Expect = 7e-62, Method: Composition-based stats.
Identities = 74/180 (41%), Positives = 109/180 (60%), Gaps = 2/180 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I +++ + F D RG+F +T+ + + ++ + F QDNHS S G +RG+H Q PP
Sbjct: 8 IEGPVLIEPKVFGDERGFFLETFKASIFEKENIPFQFSQDNHSRSSR-GVLRGMHLQIPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y Q KLVR + G++ D+ VD+R SP YG W+S+E+S N ++P GFAHGF+TLE
Sbjct: 67 YDQGKLVRVVRGKVIDVVVDVRVGSPNYGKWLSVELSEENKNIFWVPPGFAHGFLTLEDK 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWP-LLDTILPSVSEKDQNLPFLNQIDSPFEY 181
T+ +YKVT YS +++ G+ W D ++ I W L VS++DQ PF SPF Y
Sbjct: 127 TDFLYKVTGEYSPQNEVGIRWDDPALGIPWKTWLSDSEFIVSQRDQVTPFFADFKSPFVY 186
>gi|41410322|ref|NP_963158.1| RmlC [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41399156|gb|AAS06774.1| RmlC [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 201
Score = 240 bits (614), Expect = 7e-62, Method: Composition-based stats.
Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 2/178 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + + D+RG F + + K + G + Q N S S G +RGLHF
Sbjct: 6 LKVPGAWEITPTVHGDARGHFFEWLTDKGFRSFAGHRLDVRQANCSVSA-AGVLRGLHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P +QAK V C+ G +FD+ VDIR SPT+G W S+ + IYI G HGF+ L
Sbjct: 65 QVPLSQAKYVTCVRGSVFDVVVDIRVGSPTFGQWDSVLLDDAEHRTIYISEGLGHGFLAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ N+ V+Y + Y+ + + D ++ I WPL+ P++SE+D P L ++ +
Sbjct: 125 QDNSTVMYLCSAEYNPGREHTICATDPALGIDWPLVAGAAPTLSERDAAAPSLEEVRA 182
>gi|116514775|ref|YP_813681.1| dTDP-4-dehydrorhamnose 3,5-epimerase related enzyme [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|116094090|gb|ABJ59243.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
Length = 204
Score = 240 bits (614), Expect = 7e-62, Method: Composition-based stats.
Identities = 74/189 (39%), Positives = 101/189 (53%), Gaps = 18/189 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ D RG+F +TY+ +KE G FVQDN S S G +RGLHFQ+
Sbjct: 14 GIEGLAVITPAVHGDDRGYFMETYNENDMKEAGFDINFVQDNQS-SSTKGVLRGLHFQKH 72
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+R +S TYG W +E++A N Q IP GFAHGF+ L
Sbjct: 73 -FPQCKLVRAVRGDVFDVAVDLRSDSKTYGKWYVVELTAENKKQFLIPEGFAHGFLVLSD 131
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YKV DF+ + G+AW D +I I WP L D ++S++
Sbjct: 132 VAEFCYKVNDFWHSNDEGGMAWNDPAIGIEWPQLVGEYPGSADASGYALEDGTKLTLSDR 191
Query: 166 DQNLPFLNQ 174
DQ L
Sbjct: 192 DQKWLGLKD 200
>gi|307594677|ref|YP_003900994.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vulcanisaeta distributa DSM
14429]
gi|307549878|gb|ADN49943.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vulcanisaeta distributa DSM
14429]
Length = 188
Score = 240 bits (614), Expect = 7e-62, Method: Composition-based stats.
Identities = 74/181 (40%), Positives = 107/181 (59%), Gaps = 3/181 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +++ F D RG+F++ Y G+ FVQ + S S G +RGLH+Q
Sbjct: 9 LEIPDVILVEPVVFPDVRGFFAELYKRTDFLAGGIPYDFVQVSLSKS-RRGVVRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLV I GR+ D+AVD+RR SP +G +V +E+SA+N +++P GFAHGF LE
Sbjct: 68 KPMEQGKLVTVIRGRVVDVAVDVRRGSPWFGKYVMVELSADNPRLLWVPPGFAHGFQALE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T +Y T YS +H+ VAW D I I WP+ + + +SEKD P L Q ++ F+
Sbjct: 128 DDTLFLYLQTKEYSPQHERCVAWNDPEIGIPWPIRENV--IISEKDSKCPPLRQAETNFD 185
Query: 181 Y 181
Y
Sbjct: 186 Y 186
>gi|317968490|ref|ZP_07969880.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. CB0205]
Length = 196
Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats.
Identities = 75/175 (42%), Positives = 109/175 (62%), Gaps = 8/175 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQD-----VFVQDNHSFSFDCGTIRGL 56
++ ++ R F DSRG+F ++++ + + D FVQDNHS S G +RGL
Sbjct: 13 QLSGPLLITPRVFGDSRGFFYESWNQRSFNAVLEADGQSSADFVQDNHSRSTQ-GVLRGL 71
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
HFQ+ P+ Q KLVRCI G IFD+AVD R++SPT+G W+S +S++N Q+++P GFAHGF
Sbjct: 72 HFQKDPHGQGKLVRCIQGEIFDVAVDCRQSSPTFGQWISARLSSDNQQQLWVPVGFAHGF 131
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPF 171
+TL EV+YK TDF+ E + + W D + I WP + P ++EKD P
Sbjct: 132 LTLSAQAEVLYKTTDFWDRESERSLLWSDPDLAIAWP--QSTAPLLAEKDAAAPS 184
>gi|313676578|ref|YP_004054574.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Marivirga tractuosa DSM 4126]
gi|312943276|gb|ADR22466.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Marivirga tractuosa DSM 4126]
Length = 192
Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats.
Identities = 76/185 (41%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIR 54
MNI + + I++ +EDSRG+F +++ K ++ G++ FVQDN S S G IR
Sbjct: 10 MNITPTDFDDLFIIEPTVYEDSRGYFFESFHQKKFEDATGIKCEFVQDNQSRSLH-GVIR 68
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
GLH Q PP AQAKLVR + G + D+ VD+R++ PT+G S+ +SA N Q++IP GFAH
Sbjct: 69 GLHMQVPPMAQAKLVRVLRGEVLDVVVDLRKDKPTFGKSFSIHLSAENKQQLFIPRGFAH 128
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
G L E YK ++YS E++ G+ + D S++I W + D+ +SEKDQ
Sbjct: 129 GIAVLSKEAEFFYKCDNYYSPENERGIIYNDASLNIDWKI-DSEKRIISEKDQKNLDFFS 187
Query: 175 IDSPF 179
SPF
Sbjct: 188 FSSPF 192
>gi|152974748|ref|YP_001374265.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152023500|gb|ABS21270.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus cytotoxicus NVH
391-98]
Length = 182
Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats.
Identities = 84/185 (45%), Positives = 120/185 (64%), Gaps = 8/185 (4%)
Query: 1 MNINP-----VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M I +L+ R FED RG+F+++Y+ K ++LG+ F+QDN SFS GT+RG
Sbjct: 1 MEIVETHFQHALLLQPRLFEDHRGFFTESYNWKEFQKLGVSYSFIQDNLSFSAKAGTVRG 60
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LHFQ+ P AQ KL++ + G I+D+ VD+R +SPTY W +S N Q+ +P GFAHG
Sbjct: 61 LHFQKEPKAQTKLIQVLKGAIYDVIVDLRVSSPTYKEWKGFILSEENHRQLLVPKGFAHG 120
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F TL NT V+YKV ++YS +HD G+ W D+S+ ITWP+ + P +SEKD+ LP +Q
Sbjct: 121 FCTLVPNTLVMYKVDEYYSSDHDDGLYWNDESLAITWPVSE---PILSEKDKALPTFDQY 177
Query: 176 DSPFE 180
F+
Sbjct: 178 HDCFK 182
>gi|145219284|ref|YP_001129993.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prosthecochloris vibrioformis
DSM 265]
gi|145205448|gb|ABP36491.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium phaeovibrioides
DSM 265]
Length = 194
Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats.
Identities = 72/179 (40%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V + D RG+F +++ L++E + FVQDN S S G +RGLHFQRPP
Sbjct: 8 IPDVLEFEPDVLGDERGYFFESFRRDLIEEHIGRVDFVQDNESKSSR-GVLRGLHFQRPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q+KLVR + GR+ D+AVDIRR SP YG +V+ E+ ++++P GFAHGF+ L
Sbjct: 67 HTQSKLVRVVRGRVLDVAVDIRRGSPWYGRYVACELDGERKNELWVPKGFAHGFVVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
YK +Y + G+ W D ++ I W L +T + VS KD LP + I+ F Y
Sbjct: 127 AVFSYKCDSYYQPSSEGGLLWNDPALGIDWRLEETDI-RVSGKDGGLPGFSGIED-FPY 183
>gi|325108167|ref|YP_004269235.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Planctomyces brasiliensis DSM
5305]
gi|324968435|gb|ADY59213.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Planctomyces brasiliensis DSM
5305]
Length = 180
Score = 240 bits (613), Expect = 8e-62, Method: Composition-based stats.
Identities = 65/174 (37%), Positives = 92/174 (52%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I ++ D RG+F + Y E FVQDN+S S GT+RGLH+Q
Sbjct: 8 IADCLLITPAIHGDERGFFMEIYQQNRYAEEAKLPDFVQDNYSRSVQ-GTLRGLHYQLE- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLV+ I G +FD+AVD+RR SPT+G V++ ++ Q Y+P G AHGF + +
Sbjct: 66 QAQGKLVQVIRGEVFDVAVDLRRKSPTFGKHVAVRLNDQTRQQFYVPPGCAHGFYVVSES 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +YK TDFY + + W D I I WP+ + P +S KDQ +
Sbjct: 126 ADFLYKCTDFYHPASERTLQWNDPEIGIDWPVEEE--PILSAKDQAGVSFADCE 177
>gi|323144443|ref|ZP_08079047.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Succinatimonas hippei YIT
12066]
gi|322415782|gb|EFY06512.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Succinatimonas hippei YIT
12066]
Length = 183
Score = 240 bits (613), Expect = 8e-62, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V ++ +KF D+RGWFS+ + + +G Q FVQ N SFS +RG+H+Q
Sbjct: 7 SIPEVLLITNKKFGDNRGWFSEVFRLSEFEKAIGGQYKFVQINESFSMH-NILRGIHYQN 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ Q KLVR ++G +FD+AVD+R+NSPT+ WV + +SA NG Q+++P GF HGF
Sbjct: 66 -PHPQGKLVRVVSGEVFDVAVDLRKNSPTFKQWVGVTLSAQNGQQLWVPPGFGHGFFVTG 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ +Y TD+Y+ + + +A+ D +DI WP++ +P VSEKD+ N
Sbjct: 125 EHAHFVYACTDYYAPQTEHCIAYDDPELDIKWPIILGKMPLVSEKDRKGKAFNDA 179
>gi|156743590|ref|YP_001433719.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseiflexus castenholzii DSM
13941]
gi|156234918|gb|ABU59701.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseiflexus castenholzii DSM
13941]
Length = 193
Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats.
Identities = 62/172 (36%), Positives = 99/172 (57%), Gaps = 4/172 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ I++ F D RG+F ++++S+ G+ FVQDNHS S +RG H+Q
Sbjct: 10 LPGAVIIEPVCFRDERGFFLESWNSRDFAARGIAIDFVQDNHSRSVK-NVLRGFHYQDMT 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
KLVRC G + D+ VD+R SPT+G W ++E++A+N LQ+ +P GF H F+TL
Sbjct: 69 APMVKLVRCTLGNVLDVIVDLRVGSPTFGRWHAVELTADNMLQLLVPIGFGHAFLTLSDV 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E+ YK + +Y+ + +AW D I + WP+ D P +S++D+ L +
Sbjct: 129 AEIQYKCSIYYTPAAEGVIAWNDPDIGVPWPVTD---PILSQRDRKGMRLAE 177
>gi|187922882|ref|YP_001894524.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia phytofirmans
PsJN]
gi|187714076|gb|ACD15300.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia phytofirmans
PsJN]
Length = 183
Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats.
Identities = 64/156 (41%), Positives = 101/156 (64%), Gaps = 3/156 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F +++++K E FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPKVFGDARGFFFESFNAKEFAEQVEPGVEFVQDNHSRSAK-GVLRGLHYQVQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVR + G +FD+AVDIR++SP +G W + +S +N Q+++P GFAHGF+ L
Sbjct: 69 N-AQGKLVRVVEGEVFDVAVDIRKSSPNFGKWAGVVLSVDNHRQLWVPPGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDT 157
+ + +YK TD++ EH+ + W D +I I WP+ +
Sbjct: 128 SAQFLYKTTDYWYPEHERSIVWNDPAIGIEWPIDEE 163
>gi|301060779|ref|ZP_07201594.1| dTDP-4-dehydrorhamnose 3,5-epimerase [delta proteobacterium NaphS2]
gi|300445176|gb|EFK09126.1| dTDP-4-dehydrorhamnose 3,5-epimerase [delta proteobacterium NaphS2]
Length = 187
Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats.
Identities = 77/172 (44%), Positives = 104/172 (60%), Gaps = 5/172 (2%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V +++ R FED RG+F +T+ S+ ++G+ F+QDNHS S GT+RGLH+Q Q
Sbjct: 13 VILIEPRVFEDDRGFFMETFHSEKYAKMGMSKPFLQDNHSHS-RRGTLRGLHYQLENP-Q 70
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
KLV + G IFD+AVDIR SP +G W +S N Q+Y+P GFAHGF L +V
Sbjct: 71 GKLVYVVRGEIFDVAVDIRAGSPDFGKWTGNLLSEKNRRQLYVPGGFAHGFCVLSETADV 130
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
IYK TD Y+ + GV W D +++I WPL P +S+KD P L ID
Sbjct: 131 IYKCTDHYAPGDEYGVFWADNAVNIKWPL---ARPILSKKDSENPLLADIDD 179
>gi|332884076|gb|EGK04356.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dysgonomonas mossii DSM
22836]
Length = 182
Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats.
Identities = 64/174 (36%), Positives = 106/174 (60%), Gaps = 2/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V +++ + F D RG+F ++Y L E + F+QDN S S G +RGLH+Q
Sbjct: 7 SIKGVWVIEPKVFNDERGYFMESYKKNLFDEHIGKIDFIQDNESKS-TRGVLRGLHYQIG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y+QAKLVR + G + D+ VD+R++SPT+G ++++E++ N Q+++P G AHGF+ L
Sbjct: 66 EYSQAKLVRALNGSVLDVVVDLRKSSPTFGEYLAVELTDENKKQLFMPRGIAHGFLVLSQ 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YKV + Y+ H++ + W D S+ I W + + L +S KD+ FL++
Sbjct: 126 EAVFSYKVDNVYAPAHEASLLWSDPSVAINWGIDEKEL-ILSPKDKAGKFLSEA 178
>gi|330446536|ref|ZP_08310188.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328490727|dbj|GAA04685.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 180
Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats.
Identities = 74/178 (41%), Positives = 111/178 (62%), Gaps = 4/178 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V I++ + D RG++S+ YS + L + G+ VQDNH S GT+R +HFQ
Sbjct: 7 ELDGVLIIEPKIHRDDRGYYSEIYSERSLSDKGISFRAVQDNHIKS-KKGTLRAIHFQNN 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKLVRC G++ D VD+R++SPT+ W+ +E++ N LQ+ IP+GF HG + LE
Sbjct: 66 PKAQAKLVRCTKGKVHDFIVDLRKDSPTFKKWIMVELNTENNLQVLIPSGFGHGVLALED 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+TEV+YKV + Y EHD + W D ++I W + P +SEKD+ P+L D +
Sbjct: 126 DTEVMYKVDELYYPEHDRAIFWADPELNIEWGIES---PLLSEKDKTAPYLKDSDVNY 180
>gi|256843714|ref|ZP_05549202.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus crispatus
125-2-CHN]
gi|256615134|gb|EEU20335.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus crispatus
125-2-CHN]
Length = 202
Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats.
Identities = 73/189 (38%), Positives = 99/189 (52%), Gaps = 18/189 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ D RG+F +T++ + + E G FVQDN S S G +RGLHFQ+
Sbjct: 12 GIEGLAVITPTVHGDDRGYFMETFNQRDMMEAGFSINFVQDNQS-SSTKGVLRGLHFQKH 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G +FD+AVD+R NS TYG W +E++A N Q IP GFAHGF+ L
Sbjct: 71 -YPQIKLVRAVRGSVFDVAVDLRSNSKTYGKWYGVELTAENKKQFLIPQGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YKV DF+ + G+AW D I I WP + D ++ E+
Sbjct: 130 VAEFCYKVNDFWHPNDEGGMAWNDPEIGIKWPHVKGDYPGSADASGYTMDDGTKLNLVER 189
Query: 166 DQNLPFLNQ 174
DQ L
Sbjct: 190 DQEWKGLKD 198
>gi|240167774|ref|ZP_04746433.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium
kansasii ATCC 12478]
Length = 202
Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats.
Identities = 58/178 (32%), Positives = 96/178 (53%), Gaps = 2/178 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I + DSRG F + + + G + Q N S S G +RGLHF
Sbjct: 6 LDIPGAWEITPTIHGDSRGLFFEWLTERGFSAFAGHRLDVRQANCSVSA-AGVLRGLHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V C++G +FD+ VDIR SPT+G W ++ + + +YI G AHGF+ L
Sbjct: 65 ELPPSQAKYVTCVSGSVFDVVVDIRLGSPTFGRWDAVVLDDVDRRSVYISEGLAHGFLAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ N+ V+Y + Y+ + + + D ++ I WPL+D + S+S++D P L ++ +
Sbjct: 125 QDNSTVMYLCSAEYNPQREHTICATDPTLAIDWPLVDGVAASLSDRDAAAPSLQEVRA 182
>gi|297171712|gb|ADI22705.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[uncultured Rhodospirillales bacterium HF0500_23A22]
Length = 204
Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats.
Identities = 73/184 (39%), Positives = 107/184 (58%), Gaps = 1/184 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + + D RG F++T+ + ++ VQ+N S S T+RGLH+Q
Sbjct: 9 EIQGPVLFVPNRHRDPRGIFAETFRADEFRDAIGDVDLVQENQSISHPINTVRGLHYQAE 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ KL+R + G + D+AVDIR +SPT+G + +E+SA N Q++IP GFAHGF TL
Sbjct: 69 PHAQGKLMRVVQGAVLDVAVDIRPHSPTFGRHIKIELSAENWYQLWIPPGFAHGFKTLRP 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+T VIYKV+D+YS HD G+AW D + I W L +S+KD+ P ++ F
Sbjct: 129 DTHVIYKVSDYYSPSHDHGMAWNDPDLGIDWELYGQ-QAVLSDKDRQQPRFCEVTPLFAG 187
Query: 182 DGLP 185
+P
Sbjct: 188 GAIP 191
>gi|297171427|gb|ADI22429.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[uncultured Rhodospirillales bacterium HF0500_02H05]
Length = 205
Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats.
Identities = 72/197 (36%), Positives = 109/197 (55%), Gaps = 1/197 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + + D+RG F++T+ ++ VQ+N S S T+RGLH+Q
Sbjct: 9 EIQGPVLFVPNRHRDARGVFAETFRVDEFRDAIGDVDLVQENQSISHPINTVRGLHYQAE 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ Q KL+R + G + D+AVDIR +SPT+G + +E+SA N Q++IP GFAHGF TL
Sbjct: 69 PHVQGKLMRVLQGAVLDVAVDIRPHSPTFGRHIKIELSAENWYQLWIPPGFAHGFKTLRP 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+T V+YKV+D+YS HD G+AW D + I W L VS+KD+ P + + F
Sbjct: 129 DTHVMYKVSDYYSPSHDHGIAWNDADLGIDWELYGQ-QAVVSDKDRQQPRFCDVTAQFMA 187
Query: 182 DGLPLLSLNMERDLLCV 198
+P +++
Sbjct: 188 GSIPPSDATLQQGRYAA 204
>gi|187920919|ref|YP_001889951.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia phytofirmans
PsJN]
gi|187719357|gb|ACD20580.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia phytofirmans
PsJN]
Length = 182
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 73/175 (41%), Positives = 105/175 (60%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++++ + F DSRG F +T++ +E + FVQDNHS S G +RGLH+Q
Sbjct: 10 IPDVKVIEPQVFGDSRGAFLETFNQVEFEEKVARGYTFVQDNHSISAQ-GVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G +FD+AVD+RR S T+G WV + +SA+N Q++IP GFAHGF+ L
Sbjct: 69 -HPQGKLVRVVVGEVFDVAVDLRRWSSTFGRWVGVRLSASNRRQLWIPPGFAHGFVVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK T F+ EH+ + W D I + W L +P VS KD N+ +
Sbjct: 128 VAEFLYKATAFWHPEHERTLRWDDPDIAVEWELNG--VPFVSSKDAAGSRFNEAE 180
>gi|219849033|ref|YP_002463466.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chloroflexus aggregans DSM
9485]
gi|219543292|gb|ACL25030.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chloroflexus aggregans DSM
9485]
Length = 176
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 74/172 (43%), Positives = 109/172 (63%), Gaps = 3/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ I++ ED+RG+F++ ++ E GL D VQ N S++ GT+RG+HFQ
Sbjct: 7 ELKDAHIIELEPREDNRGFFARVWAKDEFAEHGLVDRVVQMNLSYNRLAGTLRGMHFQHA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYA+ KLVRCI G I+D+ +D+R +SPTY W+ + ++A N L +Y+P GFAHGF TLE
Sbjct: 67 PYAETKLVRCIRGAIYDVIIDLRPDSPTYKRWIGVTLTAANRLALYVPEGFAHGFQTLED 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+TEV Y+V+ +Y+ + GV + D + I WPL T +SEKD+ P N
Sbjct: 127 DTEVFYQVSQYYTPSAEGGVRYDDPAFGIEWPLPVT---EMSEKDKRWPLFN 175
>gi|94972402|ref|YP_595620.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Lawsonia intracellularis
PHE/MN1-00]
gi|94731939|emb|CAJ53956.1| dTDP-6-deoxy-D-glucose-3,5-epimerase [Lawsonia intracellularis
PHE/MN1-00]
Length = 180
Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 103/173 (59%), Gaps = 5/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V ++K + +EDSRG+F +T++ + E+GLQ FVQDNHS S T+RGLHFQ+
Sbjct: 7 SLEGVLLIKPKVWEDSRGYFLETWNKQRYIEIGLQLPFVQDNHS-SSTLHTLRGLHFQQQ 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLV G +FD+AVD+R NSPT+G W + +S N Q++IP G AHGF L
Sbjct: 66 -YPQGKLVSVSLGEVFDVAVDLRINSPTFGSWFGVILSEKNHYQMWIPPGLAHGFCVLSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
YK T++Y + +S + W D I I WP+ P++S KD+
Sbjct: 125 RAHFHYKCTEYYYPQDESCICWNDPDIGIDWPVQH---PNLSHKDKIAQSWAD 174
>gi|302560674|ref|ZP_07313016.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces griseoflavus
Tu4000]
gi|302478292|gb|EFL41385.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces griseoflavus
Tu4000]
Length = 197
Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats.
Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 4/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ + + + F D RG F + + + + + G Q N S S GT+RG+HF
Sbjct: 4 LSLPGAWVHEPKIFPDGRGSFHEWFKAPVFTEAAGHPLTLAQANMSVSSR-GTLRGIHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V+C+ G + D+ VDIR SP +G W ++ + + +Y+ G HGFM L
Sbjct: 63 DVPPGQAKYVKCVRGAVLDVIVDIRTGSPAFGQWEAVRLDDRDHHAVYLSEGLGHGFMAL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ V+Y ++ Y+ E + G+ D ++ I WP + + P +S KD+ P L Q
Sbjct: 123 TDDATVVYLCSEGYAPEREHGIHPLDPALGIEWP--EGLTPLLSAKDEQAPTLAQA 176
>gi|212691379|ref|ZP_03299507.1| hypothetical protein BACDOR_00871 [Bacteroides dorei DSM 17855]
gi|212665989|gb|EEB26561.1| hypothetical protein BACDOR_00871 [Bacteroides dorei DSM 17855]
Length = 189
Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats.
Identities = 75/180 (41%), Positives = 112/180 (62%), Gaps = 2/180 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V IL+ R F D+RG+F +++S + +E + FVQDN SFS G +RGLHFQ+PP
Sbjct: 8 IDGVFILEPRIFNDARGYFFESFSEREFEEKVCRTTFVQDNESFS-TYGVLRGLHFQKPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q+KLVR I G + D+AVDIR+ SPT+G V++E++ N Q +IP GFAHGF L
Sbjct: 67 FTQSKLVRVIKGAVLDVAVDIRKGSPTFGKHVAVELTGENHRQFFIPRGFAHGFAVLSDE 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
YK +Y+ + + G+AW D + I W L + +S+KD+ P L + F+++
Sbjct: 127 VLFQYKCDHYYAPQSEGGIAWDDPDLGIDWRLPADKV-ILSDKDKKHPRLKDYQTDFDFN 185
>gi|332667357|ref|YP_004450145.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Haliscomenobacter hydrossis
DSM 1100]
gi|332336171|gb|AEE53272.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Haliscomenobacter hydrossis
DSM 1100]
Length = 183
Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats.
Identities = 72/172 (41%), Positives = 106/172 (61%), Gaps = 3/172 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ ++ F D RG F++T+ + +G FVQ NHS + GT+RG+HFQ+ P
Sbjct: 8 LRGAYLIDLEPFTDERGMFARTFCKQEFAAIGHNKEFVQFNHSQNQRQGTLRGMHFQKAP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+++ KL+RCI GR+FD+ VD+R SPT+ + +E+S +N IY+P GFAHGF TLE +
Sbjct: 68 FSEIKLIRCIRGRVFDVIVDLRAQSPTFLQYYGVELSESNLRMIYVPEGFAHGFQTLEDH 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
TE+IY T FY+ + G+ ++D I I WP +SEKDQN PF+
Sbjct: 128 TELIYHHTAFYTPGQERGIHYKDPRIKIEWP---AATSIISEKDQNYPFIAD 176
>gi|239931312|ref|ZP_04688265.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces ghanaensis ATCC
14672]
gi|291439686|ref|ZP_06579076.1| 3,5-epimerase [Streptomyces ghanaensis ATCC 14672]
gi|291342581|gb|EFE69537.1| 3,5-epimerase [Streptomyces ghanaensis ATCC 14672]
Length = 197
Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats.
Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 4/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++++ + + + F D RG F + + + + E G Q N S S GT+RG+HF
Sbjct: 4 LSLSGAWVHEPKLFPDGRGSFHEWFKAPVFNEAVGHPLTLAQANMSVSSR-GTLRGIHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V+C+ G + D+ VDIR SPT+G W ++ + + +Y+ G HGFM L
Sbjct: 63 DVPPGQAKYVKCVRGAVLDVIVDIRTGSPTFGRWEAVRLDDRDHHAVYLSEGLGHGFMAL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ V+Y ++ Y+ E + G+ D ++ I WP + P +S KD+ P L +
Sbjct: 123 TEDATVVYLCSEGYAPEREHGIHPLDPALGIDWP--GDLTPLLSAKDEQAPTLAEA 176
>gi|124265818|ref|YP_001019822.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylibium petroleiphilum
PM1]
gi|124258593|gb|ABM93587.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylibium petroleiphilum
PM1]
Length = 184
Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats.
Identities = 75/179 (41%), Positives = 106/179 (59%), Gaps = 3/179 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V + + F D+RG+ ++++ + + G FV D HS S G +RGLH+QRP
Sbjct: 8 LPEVLLFEPDMFRDARGFVVESFNQRAFEAAVGHAANFVLDVHSRS-QRGVLRGLHYQRP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ QAKLVR G ++D+AVD+RR+S +G W +E+SA Q++IP GFAHGF+ L
Sbjct: 67 PHTQAKLVRVSVGSVYDVAVDLRRSSRCFGQWTGIELSAERAQQLWIPQGFAHGFLVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ EV YK T++Y + + W D IDI WP LD I P +S KD P L Q FE
Sbjct: 127 SAEVQYKATNYYESHAEGAIRWDDPLIDIKWPALD-IQPLLSLKDAAAPTLAQASVLFE 184
>gi|288802553|ref|ZP_06407992.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella melaninogenica
D18]
gi|288335081|gb|EFC73517.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella melaninogenica
D18]
Length = 184
Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 68/177 (38%), Positives = 105/177 (59%), Gaps = 4/177 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ V I++ + F D RG+F +++ K +G F+QDN S S G +RGLH+Q
Sbjct: 7 EIDGVWIIEPKVFNDDRGYFFESFKQSEFDKNVGYHVDFIQDNESKSS-YGVLRGLHYQE 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQAKLVR I G++ D+AVD+R++SPT+G +V +E+S N Q ++P GFAHGF+ L
Sbjct: 66 GDTAQAKLVRVIKGKVVDVAVDLRKSSPTFGKYVMVELSDKNKRQFFVPRGFAHGFLVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN-LPFLNQID 176
YKV + YS + ++ + W D+++ + WP+ D +S+KD N L
Sbjct: 126 DEAIFTYKVDNVYSPQTEASLRWNDETVAVKWPI-DAKDVILSDKDLNKGLSLKDAK 181
>gi|322433405|ref|YP_004210622.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidobacterium sp. MP5ACTX9]
gi|321165794|gb|ADW71495.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidobacterium sp. MP5ACTX9]
Length = 200
Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats.
Identities = 67/179 (37%), Positives = 107/179 (59%), Gaps = 2/179 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V++L+ +++ D RGWFS+ ++ K LGL + FVQ+N S+S G +RGLH+Q
Sbjct: 21 LQDVKLLRPKQYPDERGWFSEVFTGKGFSALGLPEHFVQENQSYSSR-GVLRGLHYQLG- 78
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR ++G I+D+AVD+R SP +G W E++ + ++IP GF HGF+ +
Sbjct: 79 KQQGKLVRVLSGTIWDVAVDLRPGSPDFGQWAGFELTGDELELLWIPEGFGHGFLVTSES 138
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
V+YK T +Y + + W D S+ I WPL +P++S KD +++Q + P Y
Sbjct: 139 ANVLYKTTGYYYPAGERCIRWDDPSLKIDWPLEGLGVPNISAKDATGSYMSQAELPPAY 197
>gi|296163282|ref|ZP_06846044.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. Ch1-1]
gi|295886464|gb|EFG66320.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. Ch1-1]
Length = 183
Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats.
Identities = 65/156 (41%), Positives = 101/156 (64%), Gaps = 3/156 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F +++++K E FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPKVFGDARGFFFESFNAKEFAEQVEPGAEFVQDNHSRSAK-GVLRGLHYQVQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQ KLVR + G +FD+AVDIR++SP +G W + +S +N Q+++P GFAHGF+ L
Sbjct: 69 N-AQGKLVRVVEGEVFDVAVDIRKSSPNFGKWAGVVLSVDNHRQLWVPPGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDT 157
+ + +YK TD++ EH+ + W D +I I WP+ D
Sbjct: 128 SAQFLYKTTDYWYPEHERSIVWNDPTIGIGWPIDDE 163
>gi|118595004|ref|ZP_01552351.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylophilales bacterium
HTCC2181]
gi|118440782|gb|EAV47409.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylophilales bacterium
HTCC2181]
Length = 182
Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats.
Identities = 78/177 (44%), Positives = 107/177 (60%), Gaps = 4/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQ 59
++I V+IL + F+D RG F +T++ K E +D FVQDN S S G +RGLH+Q
Sbjct: 6 LSIPEVKILDPKIFKDERGLFYETFNQKNFNEFVDEDAIFVQDNISQSIS-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P+ Q KLV + G +FD+AVDIRR+S T+G +VS +SA N QI+IP GFAHGF+TL
Sbjct: 65 KSPFPQGKLVSVLQGEVFDVAVDIRRSSSTFGRYVSATLSAENKKQIWIPEGFAHGFLTL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
V YK T+FYS + +AW D ++I WP D + S KD + D
Sbjct: 125 SDTALVYYKATNFYSPIDERCIAWNDSVLNINWPNKDRLFF--SAKDSLGKLFKEAD 179
>gi|146312295|ref|YP_001177369.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterobacter sp. 638]
gi|145319171|gb|ABP61318.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterobacter sp. 638]
Length = 186
Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats.
Identities = 66/170 (38%), Positives = 93/170 (54%), Gaps = 5/170 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ I++ + F+D RG+F + Y + L + FVQDN S S +RGLHFQ+
Sbjct: 8 LKDAVIIEPQVFKDERGYFFEVYKKNRYQSLDINAEFVQDNRSKS-TKNVLRGLHFQK-N 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KL+ G +FD+AVD+R +S T+G + S+ +S N Q YIP GFAHGF L
Sbjct: 66 KPQGKLISVSEGVVFDVAVDLRPDSATFGQYHSVILSDENFQQFYIPPGFAHGFCVLSDT 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
YK TD+Y + G+ W D ++I WP+ I P +S KD LP
Sbjct: 126 ATFQYKCTDYYDPSDEGGIIWNDPVLNIDWPI---IEPIISAKDCALPDF 172
>gi|315023084|gb|EFT36097.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Riemerella anatipestifer
RA-YM]
gi|325336323|gb|ADZ12597.1| dTDP-4-dehydrorhamnose 3,5-epimerase related enzyme [Riemerella
anatipestifer RA-GD]
Length = 181
Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats.
Identities = 74/171 (43%), Positives = 108/171 (63%), Gaps = 4/171 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ I++ FED RG+F Q ++ K ++L G+ FVQDN S S G +RGLH Q+
Sbjct: 8 LKDCYIIEPTIFEDERGYFYQKFNEKKFEDLTGMNGHFVQDNISKSS-YGVLRGLHLQKG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQAKLV C+ G+++D+AVD+R +SP++G W +E++A N LQ Y+P GFAHGF L
Sbjct: 67 EHAQAKLVSCLEGKVWDVAVDLREDSPSFGKWYGVELTAENKLQFYVPRGFAHGFAVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ-NLPF 171
YK +FY+ E + G+ W D + I W L +T + +SEKD+ LPF
Sbjct: 127 MAVFAYKCDNFYNKESEGGILWNDADLAIDWKLDETDV-ILSEKDKVQLPF 176
>gi|114799033|ref|YP_759507.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hyphomonas neptunium ATCC
15444]
gi|114739207|gb|ABI77332.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hyphomonas neptunium ATCC
15444]
Length = 193
Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats.
Identities = 80/172 (46%), Positives = 108/172 (62%), Gaps = 1/172 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V + + D RGWFS+TY+ G+ FVQDN S S GT+RGLHFQ+PP
Sbjct: 9 LPEVLHVLPARHTDGRGWFSETYNRSAFFAAGIDFEFVQDNQSRSEKAGTVRGLHFQKPP 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVRC+ GRI D+ VDIR SP +G + ++E+SA NG Q+ IP GFAHGF +L+
Sbjct: 69 HEQVKLVRCLQGRILDLVVDIRPGSPRFGKFTAVELSAINGRQLLIPAGFAHGFCSLDDG 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E+ YKV+ Y+ + D+GVA+ D I I WP L +S+KD+ LP L
Sbjct: 129 CEIYYKVSAHYAPQSDAGVAFDDPEIGIHWPFPTDSL-ILSDKDRRLPALKD 179
>gi|295693596|ref|YP_003602206.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Lactobacillus crispatus ST1]
gi|295031702|emb|CBL51181.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus crispatus ST1]
Length = 202
Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats.
Identities = 72/189 (38%), Positives = 98/189 (51%), Gaps = 18/189 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ D RG+F +T++ + + + G FVQDN S S G +RGLHFQ+
Sbjct: 12 GIEGLAVITPTVHGDDRGYFMETFNQRDMMDAGFSINFVQDNQS-SSTKGVLRGLHFQKH 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G +FD+AVD+R S TYG W +E++A N Q IP GFAHGF+ L
Sbjct: 71 -YPQIKLVRAVRGSVFDVAVDLRSESKTYGKWYGVELTAENKKQFLIPQGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YKV DF+ + G+AW D I I WP L D ++ E+
Sbjct: 130 VAEFCYKVNDFWHPNDEGGMAWNDPEIGIKWPHVKGDYPGSADASGYTLDDGTKLNLVER 189
Query: 166 DQNLPFLNQ 174
DQ L
Sbjct: 190 DQEWKGLKD 198
>gi|163846788|ref|YP_001634832.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chloroflexus aurantiacus
J-10-fl]
gi|222524606|ref|YP_002569077.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chloroflexus sp. Y-400-fl]
gi|163668077|gb|ABY34443.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chloroflexus aurantiacus
J-10-fl]
gi|222448485|gb|ACM52751.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chloroflexus sp. Y-400-fl]
Length = 176
Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats.
Identities = 73/171 (42%), Positives = 109/171 (63%), Gaps = 3/171 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ I++ ED+RG+F++ ++ E GL D VQ N S++ GT+RG+HFQ
Sbjct: 7 ELKDAHIIELEPREDNRGFFARVWAKDEFAEHGLVDRVVQMNLSYNRVAGTLRGMHFQHA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYA+ KLVRCI G I+D+ +D+R +SPTY W+ ++++A N L +Y+P GFAHGF TLE
Sbjct: 67 PYAETKLVRCIRGAIYDVIIDLRPDSPTYKRWIGVKLTAANRLALYVPEGFAHGFQTLED 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+TEV Y+V+ +Y+ + GV + D + I WPL T +SEKD+ P
Sbjct: 127 DTEVFYQVSQYYTPSAEGGVRYDDPAFGIEWPLPVT---EMSEKDKRWPLF 174
>gi|116327946|ref|YP_797666.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116330828|ref|YP_800546.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|4234801|gb|AAD12969.1| RmlC [Leptospira borgpetersenii]
gi|116120690|gb|ABJ78733.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116124517|gb|ABJ75788.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 186
Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats.
Identities = 77/181 (42%), Positives = 109/181 (60%), Gaps = 2/181 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I ++K + F D RG+F +T+ + L + + F QDNHS S G +RG+H Q P
Sbjct: 7 SIEGPVLIKPKVFGDERGFFFETFKTSLFESESIPTHFSQDNHSRSSR-GVLRGMHLQVP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY Q KLVR + G++ D+ VD+R SP YG W S+E+S N ++P GFAHGF+TLE
Sbjct: 66 PYEQGKLVRVVRGKVIDVVVDVRIGSPNYGKWFSVELSEENKNIFWVPPGFAHGFLTLED 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP-LLDTILPSVSEKDQNLPFLNQIDSPFE 180
T+ +YKVT YS +++ G+ W D ++ I W L VS++DQ PFL SPF
Sbjct: 126 KTDFLYKVTKEYSPQNEVGIRWDDPTLGIPWKTWLSDSEFIVSQRDQETPFLASFKSPFV 185
Query: 181 Y 181
Y
Sbjct: 186 Y 186
>gi|269794231|ref|YP_003313686.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sanguibacter keddieii DSM
10542]
gi|269096416|gb|ACZ20852.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sanguibacter keddieii DSM
10542]
Length = 204
Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats.
Identities = 57/180 (31%), Positives = 85/180 (47%), Gaps = 6/180 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ + ++F D RG F + + E G Q N S S G +RG+HF
Sbjct: 6 LSVPGAWEITPKQFGDPRGVFLEWFKGAPFAEEAGHALALAQANLSVSA-AGVLRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C G + D+ VDIR SPTYG W S+ + + IY+ G H F++L
Sbjct: 65 DVPPGQAKYVTCARGAVLDVVVDIRVGSPTYGQWDSVLLDDVDRRAIYLSEGLGHAFLSL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPFLNQI 175
E ++ V+Y + Y+ + G+ D I I WP + +SEKD P L +
Sbjct: 125 EDDSTVLYLCSAPYAPGREHGIHPLDPEIGIDWPTTARDGSPLQYELSEKDSVAPTLAEA 184
>gi|149925740|ref|ZP_01914004.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Limnobacter sp. MED105]
gi|149825857|gb|EDM85065.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Limnobacter sp. MED105]
Length = 185
Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats.
Identities = 71/169 (42%), Positives = 105/169 (62%), Gaps = 4/169 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ + +L + D+RG F +++++K K+ G+Q FVQ N S S G +RGLH+Q
Sbjct: 10 LQGLLLLTPTVYTDARGHFFESFNAKTFKQVAGIQPEFVQTNESLS-KRGVLRGLHWQTA 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVR + G +FD+AVD+R NS T+G W E+S N +Q++IP GFAHGF+TL
Sbjct: 69 PKAQGKLVRVVHGAVFDVAVDLRENSETFGQWYGCELSDINHVQLWIPPGFAHGFLTLTD 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQN 168
Y+VT+ +S EH+ +AW D ++I WPL P++S KD+
Sbjct: 129 TAITSYQVTEHHSPEHEHCMAWNDPVLNIEWPLRRAGVATPTLSPKDEQ 177
>gi|50882471|gb|AAT85650.1| RmlC [Escherichia coli]
Length = 154
Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats.
Identities = 66/147 (44%), Positives = 94/147 (63%), Gaps = 2/147 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S +RG+H+Q
Sbjct: 7 EIPDVLIFEPKVFGDERGFFFESFNQKVFEEAAGRKVEFVQDNHSKS-KINVLRGMHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR I+G ++D+AVD+R S T+G WV +E+S NN Q++IP GFAHGF LE
Sbjct: 66 TQNTQGKLVRVISGSVYDVAVDLREKSKTFGKWVGVELSGNNKRQLWIPEGFAHGFYVLE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKS 147
NTE +YK TD Y+ H+ + W D +
Sbjct: 126 ENTEFVYKCTDTYNPAHEHTLLWNDPT 152
>gi|271962204|ref|YP_003336400.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptosporangium roseum DSM
43021]
gi|270505379|gb|ACZ83657.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptosporangium roseum DSM
43021]
Length = 216
Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats.
Identities = 56/176 (31%), Positives = 91/176 (51%), Gaps = 4/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I+ R D RG F ++Y + L+E +G + Q N S S G +RG+HF
Sbjct: 4 LSIDGTWCHTPRIHADPRGSFLESYRAADLEESVGHRLDLAQVNCSVS-RRGVLRGIHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C++G + D+ VDIR SPT+G W ++ + + +Y+ G HGF+TL
Sbjct: 63 DVPPGQAKYVTCVSGAVLDVVVDIRVGSPTFGRWETVLLDDESRRGLYVAEGLGHGFLTL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
V+Y + ++ + G+ D ++ I WP + P +S+KD P L +
Sbjct: 123 SEQATVVYLCSRPFTPGREHGIHPLDPALGIDWPA--GVEPLLSDKDAAAPTLKEA 176
>gi|158056586|emb|CAP11386.1| 3,5-epimerase [Streptomyces olivaceus]
Length = 201
Score = 237 bits (606), Expect = 5e-61, Method: Composition-based stats.
Identities = 58/176 (32%), Positives = 85/176 (48%), Gaps = 4/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I ++F D+RG F + Y ++ + E G Q N S S G +RG+HF
Sbjct: 6 LGIEGAWEFVPQQFGDARGLFLEWYKAERMAEAVGHPLNLKQGNLSVSS-AGVVRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G + DI VD+R SPT+G W ++ + + +Y+ G HGF L
Sbjct: 65 DVPPGQAKYVTCVRGAVLDIIVDVRVGSPTFGKWEAVRLDDKDRKAVYLSEGLGHGFCAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ V Y ++ Y+ E + V D I I WP+ P +S KD P L Q
Sbjct: 125 TDDATVTYLCSEGYAPERERTVYPLDPEIGIEWPVDGE--PELSAKDAQGPTLAQA 178
>gi|83310573|ref|YP_420837.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzyme
[Magnetospirillum magneticum AMB-1]
gi|82945414|dbj|BAE50278.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzyme
[Magnetospirillum magneticum AMB-1]
Length = 184
Score = 237 bits (606), Expect = 5e-61, Method: Composition-based stats.
Identities = 79/172 (45%), Positives = 109/172 (63%), Gaps = 1/172 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V +L+ +F DSRGWF +++S + +E GL ++DN S SF GT+RGLHFQRP
Sbjct: 7 DLPGVLLLRPARFSDSRGWFMESWSHQAFREAGLDTEVIKDNVSLSFKTGTVRGLHFQRP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQAKL+ +GR+ D+AVD+R S TYG +S+E+SA G ++IP GFAHGF TLE
Sbjct: 67 PMAQAKLISVYSGRVLDVAVDLRPGSATYGRHLSVELSAAEGTMLFIPKGFAHGFCTLED 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
NT V YKV YS EH+ + W+D + I WP+ + +S KD
Sbjct: 127 NTLVGYKVDAPYSPEHEGAIHWRDPDLGIVWPVSED-QAELSPKDLAAGPFA 177
>gi|269957344|ref|YP_003327133.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylanimonas cellulosilytica
DSM 15894]
gi|269306025|gb|ACZ31575.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylanimonas cellulosilytica
DSM 15894]
Length = 205
Score = 237 bits (606), Expect = 5e-61, Method: Composition-based stats.
Identities = 60/180 (33%), Positives = 84/180 (46%), Gaps = 6/180 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I L R+F D RG F + + E G Q N S S G +RG+HF
Sbjct: 6 LKIEGAWELTPRQFGDDRGVFLEWFKGDAFAEAVGHGIDLRQANLSVSA-AGVLRGVHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V C+ G + D+ VDIR SPTYG W S+ + + IY+ G H F +L
Sbjct: 65 DVPPSQAKYVTCVKGAVLDVVVDIRVGSPTYGQWDSVLLDDVDRRAIYLSEGLGHAFCSL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQI 175
E + V Y + Y+ + G+ D I I WP + P +S+KD P L +
Sbjct: 125 EDGSTVTYLCSAPYAPGREHGIHPLDPEIGIVWPTTGRDGSPLAPLLSDKDAAAPTLAEA 184
>gi|188991707|ref|YP_001903717.1| NDP-hexulose epimerase [Xanthomonas campestris pv. campestris str.
B100]
gi|167733467|emb|CAP51668.1| NDP-hexulose epimerase [Xanthomonas campestris pv. campestris]
Length = 193
Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats.
Identities = 69/172 (40%), Positives = 108/172 (62%), Gaps = 3/172 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ I++ D+RGWF++ + ++ + + GL D FVQ N+SF+ + GT+RG+H+Q PP
Sbjct: 8 LSGAFIIEPEPRGDARGWFARVFCTQEMAQAGLVDQFVQVNNSFNAEAGTLRGMHYQLPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ K+VRCI G ++D VD+R +SPTY W +E+SA+N L +Y+P GFAHGF+TL+
Sbjct: 68 APEVKIVRCIRGALWDAIVDLRPDSPTYLQWYGVELSADNRLALYVPRGFAHGFITLQAQ 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
TE +Y + Y+ + G+ W D I I WP +S+KD P N+
Sbjct: 128 TEALYFASAMYTPAAERGLRWDDARIGIRWPCTPA---LLSDKDAAWPEFNE 176
>gi|255530275|ref|YP_003090647.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pedobacter heparinus DSM
2366]
gi|255343259|gb|ACU02585.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pedobacter heparinus DSM
2366]
Length = 184
Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats.
Identities = 66/150 (44%), Positives = 101/150 (67%), Gaps = 1/150 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ + +++ + ++D+RG+F ++Y++KL E G+ FVQDN SFS G +RG+H Q PP
Sbjct: 8 LAGLLVIEPKVWKDNRGYFYESYNAKLFAEAGISANFVQDNQSFS-QKGALRGMHAQSPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q KLVR + G ++DIAVDIR+ SPTYG +E+S+ N Q+++P GF HGF+TLE
Sbjct: 67 FEQGKLVRVLQGAVWDIAVDIRKASPTYGQHFGVELSSENHKQLWVPPGFLHGFLTLEDQ 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW 152
T YKV+++Y + GV W D ++I W
Sbjct: 127 TIFTYKVSNYYDKASEIGVMWNDPDLNINW 156
>gi|33865182|ref|NP_896741.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. WH 8102]
gi|33638866|emb|CAE07163.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. WH 8102]
Length = 195
Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats.
Identities = 77/178 (43%), Positives = 105/178 (58%), Gaps = 4/178 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I ++ + F D RGWF ++++ + E G VF QDNHS S G +RGLH+Q
Sbjct: 14 IEGPLLISPQAFGDERGWFFESWNQRRFDEAVGEAVVFSQDNHSRSVQ-GVLRGLHYQLE 72
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P QAKLVR G+IFD+AVDIR+ S T+G WV ++SA N Q+++P GFAHGF+TL
Sbjct: 73 PEPQAKLVRASVGKIFDVAVDIRQGSATFGQWVGAQLSAENKQQLWVPEGFAHGFLTLSA 132
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL--DTILPSVSEKDQNLPFLNQIDS 177
EV YK F++ + + W D SI+I WPL S+S KD P L+Q +
Sbjct: 133 VAEVQYKARGFWNKSCERAIRWDDASINIRWPLDLLGGAEVSLSGKDAEAPTLDQAKA 190
>gi|328948422|ref|YP_004365759.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Treponema succinifaciens DSM
2489]
gi|328448746|gb|AEB14462.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Treponema succinifaciens DSM
2489]
Length = 199
Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats.
Identities = 72/183 (39%), Positives = 103/183 (56%), Gaps = 3/183 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ ++ + F DSRG+F +TYS K E GL+ FVQDN S S G +RGLHFQ
Sbjct: 14 EFAGLYEIQPKVFGDSRGYFLETYSEKDFFEAGLKMKFVQDNQS-SSSKGVLRGLHFQTR 72
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KLVR + G++FD+AVD+R+ S T+G + + + + Q YIP GFAHGF +
Sbjct: 73 -HPQGKLVRSLQGKVFDVAVDLRKGSATFGKYYGVVLDSEKQNQFYIPEGFAHGFYVISD 131
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP-LLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ YK TDFY E + G+ W D SI + W + P +SEKD+ + F+
Sbjct: 132 SAVFAYKCTDFYHPEDEDGLMWNDSSIGVDWKSVGAGETPLLSEKDKKHLAFSFDADYFD 191
Query: 181 YDG 183
+G
Sbjct: 192 LNG 194
>gi|14601228|ref|NP_147761.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aeropyrum pernix K1]
gi|5104850|dbj|BAA80164.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aeropyrum pernix K1]
Length = 187
Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats.
Identities = 70/181 (38%), Positives = 106/181 (58%), Gaps = 4/181 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I + ++K +F D RG+F++ Y G+ F+Q N S+S+ G +RGLH+Q
Sbjct: 9 LEIPDIVLIKYERFSDPRGFFAELYKRTPFLAEGIPYDFIQVNLSYSYK-GVVRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ Q KLV + GR+ D+AVDIR+ SP YG VS E+ G+ ++IP GFAHGF LE
Sbjct: 68 KPHEQGKLVYVLYGRVLDVAVDIRKGSPWYGKHVSAEL--KPGMALWIPPGFAHGFQALE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+Y VT Y + + + W D +++I WP++D VS KD+N P L + ++ F
Sbjct: 126 D-ALFLYLVTKEYFKDSERCIKWNDPNLEIKWPIIDDDKVIVSGKDRNCPPLKEAETNFS 184
Query: 181 Y 181
Y
Sbjct: 185 Y 185
>gi|285019455|ref|YP_003377166.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Xanthomonas albilineans GPE
PC73]
gi|283474673|emb|CBA17172.1| probable dtdp-4-dehydrorhamnose 3,5-epimerase protein [Xanthomonas
albilineans]
Length = 185
Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats.
Identities = 68/174 (39%), Positives = 97/174 (55%), Gaps = 5/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ ++ F D+RG+F + ++++ + GL FVQ N S S G +RGLH+Q
Sbjct: 7 SLPGCLAIEPAVFGDARGYFFEAWNAERFGQHGLPTHFVQSNVSTSAK-GVLRGLHYQW- 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLV + G ++D+AVDIRR SP +G WV+ +S N Q +IP GFAHGF L
Sbjct: 65 PRPQGKLVSVLEGEVYDVAVDIRRGSPYFGRWVAAILSGENRKQFWIPEGFAHGFAVLSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y TD Y E D+ V W D +I + WP+ T+ +S+KD P L I
Sbjct: 125 RAVFSYLCTDVYVKEADAVVRWDDPAIAVDWPINATV---LSQKDAVAPCLADI 175
>gi|227894122|ref|ZP_04011927.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus ultunensis DSM
16047]
gi|227864067|gb|EEJ71488.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus ultunensis DSM
16047]
Length = 202
Score = 236 bits (604), Expect = 9e-61, Method: Composition-based stats.
Identities = 71/189 (37%), Positives = 100/189 (52%), Gaps = 18/189 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ D RG+F +T++ + + + G FVQDN S S G +RGLHFQ+
Sbjct: 12 GIEGLAVITPTVHGDDRGYFMETFNQRDMMDAGFSINFVQDNQS-SSTKGVLRGLHFQKH 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y Q KLVR + G +FD+AVD+R +S TYG W +E++A N Q IP GFAHGF+ L
Sbjct: 71 -YPQVKLVRAVRGDVFDVAVDLRSDSKTYGKWYGVELTAENKKQFLIPQGFAHGFLVLSD 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP----------------LLDTILPSVSEK 165
E YKV DF+ + G+AW D I I WP L D ++ ++
Sbjct: 130 VAEFCYKVNDFWHPNDEGGMAWNDPEIGIKWPHVKGDYPGSADASGYTLDDGTKLNLVDR 189
Query: 166 DQNLPFLNQ 174
DQ L +
Sbjct: 190 DQEWKGLKE 198
>gi|297620313|ref|YP_003708450.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Waddlia chondrophila WSU
86-1044]
gi|297375614|gb|ADI37444.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Waddlia chondrophila WSU
86-1044]
Length = 175
Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats.
Identities = 73/170 (42%), Positives = 110/170 (64%), Gaps = 3/170 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V ++ K ED RG+F++T+ S+ +E GL+ FVQ N SFS + GT+RG+H+Q PP
Sbjct: 8 LEGVFLINLEKREDERGFFARTFCSEEFREKGLETAFVQANDSFSIEQGTLRGMHYQLPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+A+ KLVRCI G ++D +D+R +SPT+G +SA+N +Y+P GFAHGF+TLE
Sbjct: 68 FAETKLVRCIKGSLYDAVLDLREDSPTFGQSFGTILSADNRTMMYVPRGFAHGFLTLEPY 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
TEV Y V+ YS + + G+ W D +I+WP + +SE+D + P
Sbjct: 128 TEVYYLVSAPYSPKFERGIRWNDPRFNISWPEPPRV---ISERDNSHPDF 174
>gi|288800122|ref|ZP_06405581.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella sp. oral taxon 299
str. F0039]
gi|288333370|gb|EFC71849.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella sp. oral taxon 299
str. F0039]
Length = 181
Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats.
Identities = 71/175 (40%), Positives = 106/175 (60%), Gaps = 3/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I++++ F D RG+F ++++SK E F+QDN S S G +RGLH+Q+
Sbjct: 7 ELKGVWIIESKVFNDDRGYFFESWNSKSFTEHIGAINFIQDNESKSS-YGVLRGLHYQKG 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
AQAKLVR I G + D+AVD+RR+SPT+G +V++E+S N Q++IP GFAHGF+ L
Sbjct: 66 DAAQAKLVRVIKGNVLDVAVDLRRSSPTFGKYVAVELSETNKRQLFIPRGFAHGFLVLSP 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YKV + Y+ E ++ + W D S+ I WP+ D + S KD L +
Sbjct: 126 EAIFCYKVDNVYAPEKEATLMWNDDSVSINWPIKDGL--IFSVKDLKGTSLKDAE 178
>gi|260436113|ref|ZP_05790083.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. WH 8109]
gi|260413987|gb|EEX07283.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. WH 8109]
Length = 196
Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats.
Identities = 72/180 (40%), Positives = 104/180 (57%), Gaps = 4/180 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + ++ + F D RGWF ++++ + E G +F QDNHS S G +RGLH+Q
Sbjct: 12 LVLQGPLLITPQAFGDDRGWFYESWNQRKFDEAVGESVLFSQDNHSRSVQ-GVLRGLHYQ 70
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAKLVR G I+D+AVDIRR+SPT+G WV +E+SA+N Q++IP GFAHGF+TL
Sbjct: 71 LAPEPQAKLVRATVGVIYDVAVDIRRHSPTFGTWVGVELSADNKCQLWIPEGFAHGFLTL 130
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL--DTILPSVSEKDQNLPFLNQIDS 177
EV YK F++ + + W D + I WP+ S+S KD ++
Sbjct: 131 SDVAEVQYKARGFWNKSCERAILWNDPDLAIAWPIDQLQGAEVSLSGKDAEAAGFKVAEA 190
>gi|157373249|ref|YP_001471849.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sediminis HAW-EB3]
gi|157315623|gb|ABV34721.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sediminis HAW-EB3]
Length = 190
Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats.
Identities = 69/182 (37%), Positives = 99/182 (54%), Gaps = 10/182 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I ++I++ F D RG+F +++ +E FVQ+NHS S G +RGLH+Q
Sbjct: 8 IADLKIIEPNLFGDERGFFFESFRDSWFREHVSDVHFVQENHSRS-KRGILRGLHYQSS- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR I+G +FD+AVD+RR S TYG W +S N Q++IP GFAHGF + +
Sbjct: 66 QTQGKLVRVISGEVFDVAVDLRRESTTYGQWFGTYLSEENRRQLWIPAGFAHGFYVISES 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--------LDTILPSVSEKDQNLPFLNQ 174
+ IYK TD+Y+ E + + W D + + WPL D P +S KD N
Sbjct: 126 ADCIYKCTDYYAPEFEKTIIWNDTELSVDWPLSRVNRSKTDDIAQPILSAKDSAGLAFNS 185
Query: 175 ID 176
+
Sbjct: 186 RE 187
>gi|170692120|ref|ZP_02883284.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia graminis C4D1M]
gi|170143404|gb|EDT11568.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia graminis C4D1M]
Length = 183
Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats.
Identities = 64/154 (41%), Positives = 100/154 (64%), Gaps = 3/154 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ + F D+RG+F +++++ E FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPKVFGDARGYFYESFNAVEFAEHVEAGVTFVQDNHSRSAK-GVLRGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ KLVR + G +FD+AVDIR++SP +G WV + +S N Q+++P GFAHGF+ L
Sbjct: 69 -HAQGKLVRVVEGEVFDVAVDIRKSSPNFGKWVGVTLSMENHRQLWVPPGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL 155
+ + +YK TD++ EH+ + W D +I I WP+
Sbjct: 128 SAQFLYKTTDYWFPEHERSILWNDPAIGIKWPVD 161
>gi|124021807|ref|YP_001016114.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prochlorococcus marinus str.
MIT 9303]
gi|123962093|gb|ABM76849.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prochlorococcus marinus str.
MIT 9303]
Length = 201
Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats.
Identities = 76/184 (41%), Positives = 115/184 (62%), Gaps = 10/184 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-----DVFVQDNHSFSFDCGTIRGLH 57
+N +L + D RG+F ++++ + +E+ FVQDNHS S CG +RGLH
Sbjct: 14 LNGPLLLSPQVHGDERGFFFESWNQRRWQEVLASHRQEAPEFVQDNHSRSS-CGVLRGLH 72
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
+Q PP+ Q KLVRC+ G IFD+A+D+RR+S TYG W +SA N Q++IP GFAHGF+
Sbjct: 73 YQLPPHPQGKLVRCVVGEIFDVAIDLRRSSATYGQWAGAHLSAENHQQLWIPVGFAHGFL 132
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPFLN 173
TL + EV+YK TDF+S + + + W D + I+WP++ D I S+S+KD +
Sbjct: 133 TLSESAEVLYKATDFWSRDCERAIRWDDPRLGISWPVVHVDGDQIPASLSQKDAVASLME 192
Query: 174 QIDS 177
++ +
Sbjct: 193 ELSA 196
>gi|325968735|ref|YP_004244927.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vulcanisaeta moutnovskia
768-28]
gi|323707938|gb|ADY01425.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Vulcanisaeta moutnovskia
768-28]
Length = 202
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 73/181 (40%), Positives = 105/181 (58%), Gaps = 3/181 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +++ F D RG+F++ Y G+ FVQ + S S G +RGLH+Q
Sbjct: 23 LEIPDVILVEPVVFPDIRGFFAELYKRTDFLAGGVPHDFVQVSLSKS-RRGVVRGLHYQL 81
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLV + GR+ D+AVD+RR SP +G +V +E+SA+N ++IP GFAHGF LE
Sbjct: 82 KPMEQGKLVTVVKGRVVDVAVDVRRGSPWFGKYVMVELSADNPRLLWIPPGFAHGFQALE 141
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T +Y T YS +H+ V W D I I WP+ + + VSEKD P L ++ F+
Sbjct: 142 DDTLFLYLQTKEYSPQHERCVVWNDPEIGIPWPIRENV--IVSEKDGKCPPLKLAETNFD 199
Query: 181 Y 181
Y
Sbjct: 200 Y 200
>gi|325673208|ref|ZP_08152901.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus equi ATCC 33707]
gi|325556043|gb|EGD25712.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus equi ATCC 33707]
Length = 209
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I+ + ++F D RG F + + E G Q N S S G +RG+HF
Sbjct: 8 LAISGAWEVTPKQFGDDRGVFLEWFKEPTFSEAVGHPLDLQQANCSVSA-AGVLRGIHFA 66
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G + D+ VDIR SPT+G W S+ + + +Y+ G H F++L
Sbjct: 67 DVPPGQAKYVTCLKGAVLDVVVDIRVGSPTFGKWDSVLLDDVDRRAVYLSEGLGHAFLSL 126
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQI 175
E ++ V+Y + Y+ + G+ D +I I WP L + +SEKD P L +
Sbjct: 127 EDSSTVVYLCSSGYAPGREHGINPLDPAIGIEWPKLSRSGQPLEFVLSEKDCEAPSLAEA 186
>gi|218662620|ref|ZP_03518550.1| dTDP-4-dehydrorhamnose 3,5-epimerase protein [Rhizobium etli
IE4771]
Length = 155
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 77/152 (50%), Positives = 101/152 (66%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M I + + +F D RG+FS+ + +E FVQDN S S GT+RGLHFQ
Sbjct: 1 MAIEGIVAITPPRFGDHRGYFSEVFKDAWFRENVADVTFVQDNESLSAQAGTVRGLHFQI 60
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+AQ KLVRC+AGRI D+ VDIR SP++G W+S E+S + G Q++IP GFAHGF T+E
Sbjct: 61 PPFAQGKLVRCLAGRIMDVVVDIRVGSPSFGKWLSQELSPDTGKQLWIPPGFAHGFATIE 120
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITW 152
N+ + YKVT YS +HD G+AW D +I I W
Sbjct: 121 PNSVISYKVTAPYSPQHDRGIAWNDPAIGIRW 152
>gi|325922242|ref|ZP_08184027.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas gardneri ATCC
19865]
gi|325547276|gb|EGD18345.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas gardneri ATCC
19865]
Length = 193
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 67/172 (38%), Positives = 105/172 (61%), Gaps = 3/172 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ + D+RGWF++ + ++ + + GL D FVQ N+SF+ GT+RG+H+Q PP
Sbjct: 8 LAGAFVIEPEQRGDARGWFARVFCTQEMAQAGLVDQFVQVNNSFNAQAGTLRGMHYQLPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
A+ K+VRCI G ++D VD+R +S TY W E++A N L +Y+P GFAHGF+TL+
Sbjct: 68 AAEVKIVRCIRGALWDAIVDLRPDSRTYLQWYGTELTAENRLALYVPRGFAHGFITLQPQ 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
TE Y Y+ + + G+ W D + + WPL VS+KD P N+
Sbjct: 128 TEAFYFANAMYTPQAERGLRWNDPRLGLQWPLEPQ---LVSDKDAAWPDFNE 176
>gi|227538986|ref|ZP_03969035.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingobacterium spiritivorum
ATCC 33300]
gi|227241189|gb|EEI91204.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingobacterium spiritivorum
ATCC 33300]
Length = 182
Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 69/175 (39%), Positives = 104/175 (59%), Gaps = 3/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ IL+ K+ DSRG+F ++++ K +L G FVQDN S+S G +RGLH Q
Sbjct: 7 KLQGCFILEPAKYGDSRGYFMESFNEKTFNDLTGTNTHFVQDNQSYS-TRGVLRGLHAQA 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AQAKLVR + G + DIAVD+R S T+G +V++ +SA N LQ+++P GF HGF+ L
Sbjct: 66 GDHAQAKLVRVLEGEVIDIAVDVRAGSSTFGQYVAVRLSAENNLQLFVPRGFLHGFVVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK +FY+ E + GV DK + + W + + +S+KD+ P +I
Sbjct: 126 ETATFFYKCDNFYNKESECGVHPLDKDLAVDWQIPIEEM-VLSDKDKAAPGFKEI 179
>gi|78184213|ref|YP_376648.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Synechococcus sp.
CC9902]
gi|78168507|gb|ABB25604.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. CC9902]
Length = 196
Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 75/173 (43%), Positives = 100/173 (57%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ ++ R F D RGWF ++++ K E G F QDNHS S G +RGLH+Q
Sbjct: 14 ISGPLLITPRAFGDDRGWFFESWNQKRFNEAVGQSVEFSQDNHSRSIQ-GVLRGLHYQLA 72
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P QAKLVR G IFD+A+DIR+ SPT G WV +SA N Q++IP GFAHGF+TL
Sbjct: 73 PEPQAKLVRSSVGSIFDVAIDIRQTSPTCGQWVGAVLSAENKAQLWIPEGFAHGFLTLSP 132
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP--LLDTILPSVSEKDQNLPFL 172
EV YK F++ + + W D ++ I WP L+ S+S+KD P
Sbjct: 133 VAEVQYKARGFWNKACERAIRWDDPNLAIDWPQAELNGTAISLSDKDAEAPDF 185
>gi|260428729|ref|ZP_05782707.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Citreicella sp. SE45]
gi|260420323|gb|EEX13575.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Citreicella sp. SE45]
Length = 202
Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 79/178 (44%), Positives = 108/178 (60%), Gaps = 1/178 (0%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V I+ +F D+RG FS+ ++ L+ + FVQDN S S D G +RGLH Q PP
Sbjct: 21 LPGVVIVTPNRFGDARGHFSEVWNRDTLRGHAIDIEFVQDNQSLSRDVGVVRGLHCQAPP 80
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLVR G IFD+AVD+RR+S TYG WV +E+SA NG Q+ +P GF HGF+T E +
Sbjct: 81 RAQDKLVRVAQGAIFDVAVDVRRDSETYGQWVGVELSAENGRQLLVPRGFLHGFVTREPD 140
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
T VIYK +D Y+ + + V W D + I W + D +S KD P ++PF+
Sbjct: 141 TLVIYKCSDSYAPDTERPVFWADPDLAIDWGI-DPAQAILSAKDAEAPAFAAFETPFD 197
>gi|170726036|ref|YP_001760062.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella woodyi ATCC 51908]
gi|169811383|gb|ACA85967.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella woodyi ATCC 51908]
Length = 182
Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats.
Identities = 68/180 (37%), Positives = 101/180 (56%), Gaps = 5/180 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V+IL + F D RG F + + E FVQ+N S S T+RGLH+Q
Sbjct: 8 ISDVKILAPQVFTDERGSFHEIFRDDWFIEHVADVRFVQENQS-SSKQSTLRGLHYQTA- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KL+R I+G +FD+ VD+RR+SPT+G S +SANN Q+++P GFAHGF +
Sbjct: 66 QTQGKLIRVISGEVFDVVVDLRRSSPTFGHCFSTTLSANNKHQLWVPIGFAHGFYVTSES 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
E++YK TD+Y+ + + + W D + I WP+ P +SEKD+ F ++
Sbjct: 126 AELVYKCTDYYAPQFECSILWNDPELAIDWPIASDCNPLLSEKDRKGVLFQDA---FVFE 182
>gi|21231461|ref|NP_637378.1| strX protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66768485|ref|YP_243247.1| strX protein [Xanthomonas campestris pv. campestris str. 8004]
gi|21113134|gb|AAM41302.1| strX protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66573817|gb|AAY49227.1| strX protein [Xanthomonas campestris pv. campestris str. 8004]
Length = 193
Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats.
Identities = 69/172 (40%), Positives = 108/172 (62%), Gaps = 3/172 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ I++ D+RGWF++ + ++ + + GL D FVQ N+SF+ + GT+RG+H+Q PP
Sbjct: 8 LSGAFIIEPEPRGDARGWFARVFCTQEMAQAGLVDQFVQVNNSFNAEAGTLRGMHYQLPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ K+VRCI G ++D VD+R +SPTY W +E++A+N L +Y+P GFAHGF+TL+
Sbjct: 68 APEVKIVRCIRGALWDAIVDLRPDSPTYLQWYGVELTADNRLALYVPRGFAHGFITLQAQ 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
TE +Y + Y+ + G+ W D I I WP VS+KD P N+
Sbjct: 128 TEALYFASAMYTPAAERGLRWDDARIGIRWPCTPA---LVSDKDAAWPEFNE 176
>gi|332671010|ref|YP_004454018.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cellulomonas fimi ATCC 484]
gi|332340048|gb|AEE46631.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cellulomonas fimi ATCC 484]
Length = 206
Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats.
Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 10/197 (5%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ + R+F D RG F + ++ + +G Q N S S G +RG+HF
Sbjct: 6 LSVPGALEITPRQFADDRGVFLEWFAGAAFGEAVGHDLTLAQANCSVSA-AGVLRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C G + D+ VDIR SPT+G W S+ + + IY+P G H FM+L
Sbjct: 65 DVPPGQAKYVTCARGAVLDVVVDIRVGSPTFGQWDSVLLDDVDRRAIYVPEGLGHAFMSL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQI 175
E ++ V+Y + Y+ + GV D + I WP + P +S KD P L
Sbjct: 125 EDDSTVLYLCSAPYAPGREHGVHPLDADLAIAWPTQGRDGRPLTPLLSPKDAEAPSLADA 184
Query: 176 DSPFEYDGLPLLSLNME 192
+ GL ++ ++E
Sbjct: 185 QA----QGLLPVAADVE 197
>gi|322433923|ref|YP_004216135.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidobacterium sp. MP5ACTX9]
gi|321161650|gb|ADW67355.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidobacterium sp. MP5ACTX9]
Length = 184
Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats.
Identities = 74/178 (41%), Positives = 106/178 (59%), Gaps = 7/178 (3%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V++++ R+F D RGWF++ ++++ GL FVQDN SFS G +RGLH+Q
Sbjct: 10 DVKLIRPRRFGDDRGWFAEMFNTQAFAANGLPAQFVQDNQSFSAK-GVLRGLHYQLE-RP 67
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEI----SANNGLQIYIPTGFAHGFMTLE 120
Q KLVRC++G I+D+AVD+RR SP +G W + ++ A ++IP GFAHGF+ L
Sbjct: 68 QGKLVRCLSGHIWDVAVDLRRESPDFGKWAAFDLKPLNDAGELELLWIPEGFAHGFLVLS 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
EV+YK TD Y + V W D ++ I WPL + I PS+S KD + D P
Sbjct: 128 ETAEVLYKTTDLYHPLGERCVKWDDPTLAIPWPL-EGITPSISGKDALGKTFAEADLP 184
>gi|306845701|ref|ZP_07478270.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella sp. BO1]
gi|306274022|gb|EFM55849.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella sp. BO1]
Length = 174
Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats.
Identities = 69/172 (40%), Positives = 107/172 (62%), Gaps = 3/172 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NI+ ++ + +D RGWF++ Y E L+ F Q + SFS + GT+RGLH+Q
Sbjct: 6 LNIDGAWSIEPERLKDERGWFARVYCEAAFAERKLETHFPQHSLSFSREKGTLRGLHYQN 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ + KLV C+ G ++D+ VDIR +SPTY W +E+SA NG Q+YIP G AHGF TL
Sbjct: 66 EPHCETKLVTCLQGIVWDVLVDIRPHSPTYRRWAGVELSAENGAQLYIPEGCAHGFQTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ + Y ++ Y+ +H +G+ + D ++DI WP ++ +S+KD PFL
Sbjct: 126 DDVLIRYMISKPYAPDHAAGIRYDDPALDIPWPDKPSV---ISQKDLGWPFL 174
>gi|23500186|ref|NP_699626.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella suis 1330]
gi|161620506|ref|YP_001594392.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella canis ATCC 23365]
gi|163844603|ref|YP_001622258.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella suis ATCC 23445]
gi|254699693|ref|ZP_05161521.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella suis bv. 5 str. 513]
gi|254702829|ref|ZP_05164657.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella suis bv. 3 str. 686]
gi|254706050|ref|ZP_05167878.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella pinnipedialis
M163/99/10]
gi|254712263|ref|ZP_05174074.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella ceti M644/93/1]
gi|254715334|ref|ZP_05177145.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella ceti M13/05/1]
gi|256015220|ref|YP_003105229.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella microti CCM 4915]
gi|256059351|ref|ZP_05449553.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella neotomae 5K33]
gi|256157869|ref|ZP_05455787.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella ceti M490/95/1]
gi|256253170|ref|ZP_05458706.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella ceti B1/94]
gi|260167195|ref|ZP_05754006.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella sp. F5/99]
gi|260568258|ref|ZP_05838727.1| dTDP-4-dehydrorhamnose reductase [Brucella suis bv. 4 str. 40]
gi|261217064|ref|ZP_05931345.1| dTDP-4-dehydrorhamnose reductase [Brucella ceti M13/05/1]
gi|261220277|ref|ZP_05934558.1| dTDP-4-dehydrorhamnose reductase [Brucella ceti B1/94]
gi|261313487|ref|ZP_05952684.1| dTDP-4-dehydrorhamnose reductase [Brucella pinnipedialis
M163/99/10]
gi|261319934|ref|ZP_05959131.1| dTDP-4-dehydrorhamnose reductase [Brucella ceti M644/93/1]
gi|261323310|ref|ZP_05962507.1| dTDP-4-dehydrorhamnose reductase [Brucella neotomae 5K33]
gi|261750158|ref|ZP_05993867.1| dTDP-4-dehydrorhamnose reductase [Brucella suis bv. 5 str. 513]
gi|261753431|ref|ZP_05997140.1| dTDP-4-dehydrorhamnose reductase [Brucella suis bv. 3 str. 686]
gi|261756599|ref|ZP_06000308.1| dTDP-4-dehydrorhamnose reductase [Brucella sp. F5/99]
gi|265996377|ref|ZP_06108934.1| dTDP-4-dehydrorhamnose reductase [Brucella ceti M490/95/1]
gi|23463787|gb|AAN33631.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella suis 1330]
gi|161337317|gb|ABX63621.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella canis ATCC 23365]
gi|163675326|gb|ABY39436.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella suis ATCC 23445]
gi|255997880|gb|ACU49567.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella microti CCM 4915]
gi|260154923|gb|EEW90004.1| dTDP-4-dehydrorhamnose reductase [Brucella suis bv. 4 str. 40]
gi|260918861|gb|EEX85514.1| dTDP-4-dehydrorhamnose reductase [Brucella ceti B1/94]
gi|260922153|gb|EEX88721.1| dTDP-4-dehydrorhamnose reductase [Brucella ceti M13/05/1]
gi|261292624|gb|EEX96120.1| dTDP-4-dehydrorhamnose reductase [Brucella ceti M644/93/1]
gi|261299290|gb|EEY02787.1| dTDP-4-dehydrorhamnose reductase [Brucella neotomae 5K33]
gi|261302513|gb|EEY06010.1| dTDP-4-dehydrorhamnose reductase [Brucella pinnipedialis
M163/99/10]
gi|261736583|gb|EEY24579.1| dTDP-4-dehydrorhamnose reductase [Brucella sp. F5/99]
gi|261739911|gb|EEY27837.1| dTDP-4-dehydrorhamnose reductase [Brucella suis bv. 5 str. 513]
gi|261743184|gb|EEY31110.1| dTDP-4-dehydrorhamnose reductase [Brucella suis bv. 3 str. 686]
gi|262550674|gb|EEZ06835.1| dTDP-4-dehydrorhamnose reductase [Brucella ceti M490/95/1]
Length = 174
Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats.
Identities = 69/172 (40%), Positives = 109/172 (63%), Gaps = 3/172 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NIN ++ + +D RGWF++ Y E L+ F Q + SFS + GT+RGLH+Q
Sbjct: 6 LNINGAWSIEPERLKDERGWFARVYCEAAFAERKLETHFPQHSLSFSREKGTLRGLHYQN 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+++ KLV C+ G ++D+ VD+R +SPTY W +E+SA NG+Q+YIP G AHGF TL
Sbjct: 66 EPHSETKLVTCLQGIVWDVLVDLRPHSPTYRRWAGVELSAENGVQLYIPEGCAHGFQTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ + Y ++ Y+ +H +G+ + D ++DI WP ++ +S+KD PFL
Sbjct: 126 DDVLIRYMISKPYAPDHAAGIRYDDPALDIPWPEKPSV---ISQKDLGWPFL 174
>gi|116074424|ref|ZP_01471686.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. RS9916]
gi|116069729|gb|EAU75481.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. RS9916]
Length = 195
Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats.
Identities = 73/177 (41%), Positives = 105/177 (59%), Gaps = 4/177 (2%)
Query: 4 NPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ F D RGWF ++++ + +G VF QDNHS S G +RGLH+Q P
Sbjct: 15 DGPLLIQPSVFGDDRGWFFESWNQQRFDDAVGSPVVFSQDNHSRSSR-GVLRGLHYQLAP 73
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
QAKLVR G +FD+AVD+R+ SPT+G WV E++A N Q++IP GFAHGF+TL
Sbjct: 74 QPQAKLVRVSLGAVFDVAVDLRQKSPTFGHWVGAELTAENKAQLWIPEGFAHGFLTLSEV 133
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQIDS 177
EV YK F++ + + + W D S+ ITWP+ L S+S+KD + S
Sbjct: 134 AEVQYKARGFWNKDCERAIRWDDPSLAITWPVHQLKGTAVSLSDKDADAASFQAATS 190
>gi|78213549|ref|YP_382328.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. CC9605]
gi|78198008|gb|ABB35773.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. CC9605]
Length = 193
Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 100/176 (56%), Gaps = 4/176 (2%)
Query: 7 RILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
++ + F D RGWF ++++ + +G +F QDNHS S G +RGLH+Q P Q
Sbjct: 18 LLITPQAFGDDRGWFYESWNQRKFDDAVGESVLFSQDNHSRSIQ-GVLRGLHYQLAPEPQ 76
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AKLVR G I+D+AVDIRRNSPT+G WV E+SA N Q++IP GFAHGF+TL EV
Sbjct: 77 AKLVRATVGAIYDVAVDIRRNSPTFGAWVGAELSAENKCQLWIPEGFAHGFLTLSDVAEV 136
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLL--DTILPSVSEKDQNLPFLNQIDSPF 179
YK F++ + G+ W D + I WP+ S+S KD F
Sbjct: 137 QYKARGFWNKSCERGIIWNDSDLAIAWPIDRLQGAEVSLSGKDAEAASFKAAGDVF 192
>gi|75907336|ref|YP_321632.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anabaena variabilis ATCC
29413]
gi|75701061|gb|ABA20737.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anabaena variabilis ATCC
29413]
Length = 189
Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats.
Identities = 62/172 (36%), Positives = 106/172 (61%), Gaps = 3/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ I+ + D RG+F++T+ + GL+ V Q N S+++ GT+RG+H+Q
Sbjct: 7 SLQDAFIIDLEEKPDHRGFFARTFCANEFAAHGLKPVVAQCNLSYNYKKGTLRGMHYQLR 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P A+ KL+RCI G I+D+ +D+R SPT+ + +E++A+N +Y+P FAHG+ L
Sbjct: 67 PAAETKLIRCIKGAIYDVIIDMRPESPTFLSHIGVELTADNRRALYVPEMFAHGYQALTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ EV+Y+V +FY+ ++ G+ + D +I WPL T+ +S+KD N P L
Sbjct: 127 DAEVVYQVGEFYTPGYEKGLRYNDPFFNIEWPLDVTV---ISDKDANWPLLE 175
>gi|83814948|ref|YP_444733.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salinibacter ruber DSM 13855]
gi|83756342|gb|ABC44455.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salinibacter ruber DSM 13855]
Length = 186
Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats.
Identities = 69/174 (39%), Positives = 100/174 (57%), Gaps = 5/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ VR+++ + D RG F++ ++ + GL FVQDN S S + G +RGLHFQ
Sbjct: 7 SLPGVRLIEPDVYTDDRGSFAELWNVRDYGHHGLDVTFVQDNLSRSRE-GVLRGLHFQN- 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL+ + G ++D+ VD+R + T+G W +SA N Q+Y+P G+AHGF+
Sbjct: 65 PRAQGKLISVLEGAVYDVVVDVRAGADTFGAWEGQVLSAENARQLYVPEGYAHGFVATSG 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK TDFY E D V W D ++ I WP D P +SEKD P L++I
Sbjct: 125 EVLFHYKCTDFYHPEADRTVRWDDPALGIDWPTED---PILSEKDAGAPALDEI 175
>gi|239833694|ref|ZP_04682022.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ochrobactrum intermedium LMG
3301]
gi|239821757|gb|EEQ93326.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ochrobactrum intermedium LMG
3301]
Length = 181
Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats.
Identities = 65/172 (37%), Positives = 107/172 (62%), Gaps = 3/172 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NI+ ++ + +D RGWF++ + E ++ F Q + SFS + GT+RGLH+Q
Sbjct: 13 LNIDGAWSIEPERLKDERGWFARVFCEGAFAERQMETHFPQHSLSFSREKGTLRGLHYQS 72
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+++ KLV C+ G I+D+ VD+R +SPTY W +E+SA NG+Q+YIP G AHGF TL
Sbjct: 73 EPHSETKLVTCLQGVIWDVLVDLRPHSPTYRRWTGVELSAENGVQLYIPEGCAHGFQTLT 132
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ V Y ++ Y+ ++ +G+ + D ++ I WP ++ +S+KD P L
Sbjct: 133 PDVLVRYMISKPYAPDYATGLRYDDPALGIPWPNRPSV---ISDKDLAWPLL 181
>gi|332286406|ref|YP_004418317.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Pusillimonas sp. T7-7]
gi|330430359|gb|AEC21693.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Pusillimonas sp. T7-7]
Length = 193
Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats.
Identities = 68/184 (36%), Positives = 96/184 (52%), Gaps = 16/184 (8%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+ ++ F D RG F ++Y + LG FVQDN S S G +RGLH+Q
Sbjct: 8 LAGVKRIELAVFRDDRGCFLESYQQERYAQALGDAVRFVQDNCSHS-HRGVLRGLHYQVE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANN----------GLQIYIPTG 111
+ Q KLVR G IFD+AVD+R SPT+G W +S+ +Q++IP G
Sbjct: 67 -HPQGKLVRVAQGEIFDVAVDLRPGSPTFGQWEGHTLSSAQLALPAAGTVSHIQLWIPPG 125
Query: 112 FAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPF 171
FAHGF TL V YK TD+Y ++ + W D + I WP + P +S+KD+
Sbjct: 126 FAHGFFTLSETAMVEYKCTDYYHPGDEACLLWNDPELAIAWP---DVQPRLSDKDRAGLS 182
Query: 172 LNQI 175
L +
Sbjct: 183 LRAL 186
>gi|300313694|ref|YP_003777786.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Herbaspirillum seropedicae
SmR1]
gi|226726337|gb|ACO81758.1| RfbC [Herbaspirillum seropedicae SmR1]
gi|300076479|gb|ADJ65878.1| dTDP-6-deoxy-D-glucose-3,5 epimerase protein [Herbaspirillum
seropedicae SmR1]
Length = 181
Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats.
Identities = 71/175 (40%), Positives = 101/175 (57%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V +L+ FED+RG F + ++++ K L GL FVQDN S S G +RGLH+Q
Sbjct: 8 LPGVLVLEPTVFEDARGHFFEAFNARQFKALTGLSPEFVQDNQSHS-KAGVLRGLHYQLH 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR I G I D+ VD+RR SP++G W S+ +SA N Q++IP GFAHGF
Sbjct: 67 QP-QGKLVRVIQGEITDVVVDLRRQSPSFGQWASVTLSAQNRRQLWIPEGFAHGFHVRSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+V YK T ++S + + W D + I W L T P +S+KD+ + Q +
Sbjct: 126 IADVQYKTTAYWSAPDERCIRWDDPDLAIDWQL--TAPPLLSDKDRQGVYWRQAE 178
>gi|88808162|ref|ZP_01123673.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. WH 7805]
gi|88788201|gb|EAR19357.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. WH 7805]
Length = 195
Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats.
Identities = 76/178 (42%), Positives = 103/178 (57%), Gaps = 4/178 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I ++ R F D RGWF ++++ + + G VF QDNHS S G +RGLH+Q
Sbjct: 14 IAGPLLISPRAFGDERGWFFESWNQRKFDEAAGETVVFSQDNHSRSVQ-GVLRGLHYQLA 72
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLVR G IFD+AVDIR+ S T+G WV +SA N Q+++P GFAHGF+TL
Sbjct: 73 PEPQGKLVRASIGEIFDVAVDIRQGSATFGQWVGAHLSAENKQQLWVPEGFAHGFLTLSP 132
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL--DTILPSVSEKDQNLPFLNQIDS 177
EV YK F++ E + + W D SI+I WPL S+S KD + L+Q +
Sbjct: 133 VAEVQYKARGFWNKECERAIVWNDASINIQWPLDQLGGAEVSLSGKDADAASLDQAKA 190
>gi|296274085|ref|YP_003656716.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Arcobacter nitrofigilis DSM
7299]
gi|296098259|gb|ADG94209.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Arcobacter nitrofigilis DSM
7299]
Length = 189
Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats.
Identities = 73/183 (39%), Positives = 112/183 (61%), Gaps = 1/183 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V IL F D RG+F ++YS + E GL F+QDN S++ T RG H+Q
Sbjct: 7 KLDGVLILNPHVFNDERGFFYESYSKRKFLENGLDYNFIQDNQSYNKYKHTFRGFHYQMN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P +Q LVR ++G I D +DIR+ SPTYG +VS +S++N Q+ IP GFAHG++TL
Sbjct: 67 PKSQTTLVRVVSGEIIDYVIDIRKKSPTYGQYVSQILSSDNHKQMLIPKGFAHGYLTLTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
N ++YK+ + YS HD + + D +I+I + + L +++KD + P L QID+ F Y
Sbjct: 127 NVTILYKMDELYSPNHDRILNFMDSTINIKLNIDKSEL-IIADKDNSAPMLAQIDNNFLY 185
Query: 182 DGL 184
+ +
Sbjct: 186 EEM 188
>gi|282900183|ref|ZP_06308139.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein
[Cylindrospermopsis raciborskii CS-505]
gi|281194932|gb|EFA69873.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein
[Cylindrospermopsis raciborskii CS-505]
Length = 181
Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats.
Identities = 63/174 (36%), Positives = 106/174 (60%), Gaps = 3/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ I++ + D RG+F++T+ ++ E GL+ Q N SF+ GT+RG+H+Q
Sbjct: 7 SLAGAFIIELEEKPDHRGFFARTFCAQEFAEHGLKPTVAQCNLSFNHQKGTLRGMHYQIT 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P + KL+RC G I+D+ VD+R SPTY ++ +E++A N +Y+P FAHG+ L
Sbjct: 67 PATETKLIRCTQGAIYDVIVDMRPESPTYLSYIGVELTATNRRALYVPEMFAHGYQALTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
EV+Y+V +FY+ ++ G+ + D +DI WPL T +S+KD++ P L +
Sbjct: 127 GAEVVYQVGEFYTPGYERGLRYDDPILDIVWPLNVT---EISQKDRSWPLLESV 177
>gi|306840751|ref|ZP_07473499.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella sp. BO2]
gi|306289257|gb|EFM60504.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella sp. BO2]
Length = 174
Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats.
Identities = 68/172 (39%), Positives = 107/172 (62%), Gaps = 3/172 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NI+ ++ + +D RGWF++ Y E L+ F Q + SFS + GT+RGLH+Q
Sbjct: 6 LNIDGAWSIEPERLKDERGWFARVYCEAAFAERKLETHFPQHSLSFSREKGTLRGLHYQS 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ + KLV C+ G ++D+ VD+R +SPTY W +E+SA NG Q+YIP G AHGF TL
Sbjct: 66 EPHCETKLVTCLQGIVWDVLVDLRPHSPTYRRWAGVELSAENGAQLYIPEGCAHGFQTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ + Y ++ Y+ +H +G+ + D ++DI WP ++ +S+KD PFL
Sbjct: 126 DDVLIRYMISKPYAPDHAAGIRYDDPALDIPWPDKPSV---ISQKDLGWPFL 174
>gi|312194700|ref|YP_004014761.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EuI1c]
gi|311226036|gb|ADP78891.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EuI1c]
Length = 205
Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 93/178 (52%), Gaps = 4/178 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ + R+ DSRG F + + + L+ LG Q NHS S GT+RG+H+
Sbjct: 6 LSVPDAWVFTPRQHTDSRGTFLEWFRADALEKALGHPLGLAQGNHSIS-RAGTLRGVHYA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V C++GR+ D +DIR SPT+G W ++++ + IY+ G H F+ L
Sbjct: 65 DVPPSQAKYVTCVSGRVLDCVIDIRVGSPTFGQWAAVQLDDVDRKGIYLAEGLGHAFIAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+V Y + Y+ + G+ D + + WP + P +S+KD P L + ++
Sbjct: 125 TDGAQVSYLCSTPYTPGRERGINPLDPDLGLPWPA--DLTPLLSDKDAVAPTLKEAEA 180
>gi|86130453|ref|ZP_01049053.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dokdonia donghaensis MED134]
gi|85819128|gb|EAQ40287.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dokdonia donghaensis MED134]
Length = 184
Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats.
Identities = 72/176 (40%), Positives = 105/176 (59%), Gaps = 3/176 (1%)
Query: 4 NPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ I + FED RG+F +++++K G + FVQDN S S G +RGLHFQ
Sbjct: 9 KDLIICTPKVFEDDRGYFYESFNAKAFHSFAGFEPEFVQDNQSQS-TYGVLRGLHFQIGE 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ+KLVR +AG + D+ VD+R+N PTY S+ +SA N Q+++P G AHGF+TL
Sbjct: 68 FAQSKLVRVVAGEVLDVVVDLRKNEPTYKKAYSIHLSAENKKQLFVPKGMAHGFVTLSDT 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
IYK ++Y+ E + G+A+ D S+ I W LLD +SEKD+ L + S
Sbjct: 128 ATFIYKCDNYYNKESERGLAYNDPSLQIDW-LLDKQDVILSEKDKENTMLADLPSN 182
>gi|167950764|ref|ZP_02537838.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 162
Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats.
Identities = 66/161 (40%), Positives = 101/161 (62%), Gaps = 5/161 (3%)
Query: 17 SRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
+RG+F +++++K ++ G FVQDNHS S +RGLH+Q Q KLVR G
Sbjct: 3 ARGFFLESFNAKAFQQATGSDVRFVQDNHSRS-QRNVLRGLHYQIQQP-QGKLVRVAQGA 60
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVDIRR+SP++G WV +E++ N Q+++P GFAHGF+ L + + +YK TD+Y+
Sbjct: 61 VFDVAVDIRRSSPSFGQWVGVELTEENHRQLWVPAGFAHGFVVLSESADFLYKTTDYYAP 120
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EH+ + W D I I WP+ + +S KD+ L Q +
Sbjct: 121 EHERCIRWDDPEIGIEWPINADL--QLSSKDKEGLLLRQAE 159
>gi|294624435|ref|ZP_06703123.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292601258|gb|EFF45307.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 185
Score = 234 bits (597), Expect = 6e-60, Method: Composition-based stats.
Identities = 67/174 (38%), Positives = 96/174 (55%), Gaps = 5/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ +++ R F D RG F + ++++ + G F+Q N S S G +RGLH+Q
Sbjct: 7 SLPGCFVVEPRVFGDERGQFFEAWNAERFDQHGFSARFLQSNISTS-TKGVLRGLHYQW- 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLV + G ++D+AVDIRR SP +G W + +SA N Q +IP GFAHGF L
Sbjct: 65 PRPQGKLVSVLEGEVYDVAVDIRRGSPYFGQWTAAILSAENNRQFWIPEGFAHGFAVLSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y TD Y + D+ V W D +I + WP+ P +S KD+ PFL I
Sbjct: 125 RAVFSYLCTDIYVHDADASVRWDDATIGVDWPISS---PILSAKDRAAPFLEDI 175
>gi|294665241|ref|ZP_06730538.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292604992|gb|EFF48346.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 185
Score = 234 bits (597), Expect = 6e-60, Method: Composition-based stats.
Identities = 67/174 (38%), Positives = 96/174 (55%), Gaps = 5/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ +++ R F D RG F + ++++ + G F+Q N S S G +RGLH+Q
Sbjct: 7 SLPGCFVVEPRVFGDERGQFFEAWNAERFDQHGFSARFLQSNISTS-TKGVLRGLHYQW- 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLV + G ++D+AVDIRR SP +G W + +SA N Q +IP GFAHGF L
Sbjct: 65 PRPQGKLVSVLEGEVYDVAVDIRRGSPYFGQWTAAILSAENNRQFWIPEGFAHGFAVLSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y TD Y + D+ V W D +I + WP+ P +S KD+ PFL I
Sbjct: 125 RAVFSYLCTDIYVHDADASVRWDDATIGVDWPISS---PILSAKDRAAPFLEDI 175
>gi|110589476|gb|ABG77247.1| dTDP-4-dehydrorhamnose 35-epimerase RbfC [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 163
Score = 234 bits (597), Expect = 6e-60, Method: Composition-based stats.
Identities = 66/161 (40%), Positives = 101/161 (62%), Gaps = 5/161 (3%)
Query: 17 SRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
+RG+F +++++K ++ G FVQDNHS S +RGLH+Q Q KLVR G
Sbjct: 4 ARGFFLESFNAKAFQQATGSDVRFVQDNHSRS-QRNVLRGLHYQIQQP-QGKLVRVAQGA 61
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+AVDIRR+SP++G WV +E++ N Q+++P GFAHGF+ L + + +YK TD+Y+
Sbjct: 62 VFDVAVDIRRSSPSFGQWVGVELTEENHRQLWVPAGFAHGFVVLSESADFLYKTTDYYAP 121
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EH+ + W D I I WP+ + +S KD+ L Q +
Sbjct: 122 EHERCIRWDDPEIGIEWPINADL--QLSSKDKEGLLLRQAE 160
>gi|296137704|ref|YP_003644948.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salinibacter ruber M8]
gi|295981873|emb|CBH22831.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salinibacter ruber M8]
Length = 193
Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats.
Identities = 68/174 (39%), Positives = 99/174 (56%), Gaps = 5/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ VR+++ + D RG F++ ++ + GL FVQDN S S + G +RGLHFQ
Sbjct: 14 SLPGVRLIEPDVYMDDRGSFAELWNVRDYGHHGLDVTFVQDNLSRSRE-GVLRGLHFQN- 71
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KL+ + G ++D+ VD+R + T+G W +SA N Q+Y+P G+AHGF+
Sbjct: 72 PRPQGKLISVLKGAVYDVVVDVRAGADTFGAWEGQVLSAENARQLYVPEGYAHGFVATSG 131
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK TDFY E D V W D ++ I WP D P +SEKD P L++I
Sbjct: 132 EVLFHYKCTDFYHPEADRTVRWDDPALGIDWPTED---PILSEKDAGAPALDEI 182
>gi|325286259|ref|YP_004262049.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cellulophaga lytica DSM 7489]
gi|324321713|gb|ADY29178.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cellulophaga lytica DSM 7489]
Length = 183
Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGL-QDVFVQDNHSFSFDCGTIRGLHFQR 60
+ +L+ F D RG+F ++Y++ ++ + FVQDN SFS G IR LH+Q+
Sbjct: 9 KLQGCLVLEPTLFNDDRGYFFESYNTNRFNDIVDQEVNFVQDNQSFS-TRGVIRALHYQK 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQAKL+R + G I D+AVD+R +S TYG + S+E+S+ N Q+++P GFAHGF L
Sbjct: 68 GNNAQAKLIRVLNGVILDVAVDLRPHSKTYGEYFSVELSSENKKQLFVPRGFAHGFSVLS 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
EV+YK ++Y+ E + G+ + D +++I W + + VSEKD LP L +I
Sbjct: 128 DTAEVLYKCDNYYNKESEGGIIYNDVTLNIDWKVSPEEI-KVSEKDLILPTLKEI 181
>gi|71898670|ref|ZP_00680840.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa Ann-1]
gi|71731617|gb|EAO33678.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa Ann-1]
Length = 185
Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats.
Identities = 70/173 (40%), Positives = 103/173 (59%), Gaps = 5/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ R F+D+RG F + ++++ + G+ FVQ N S S G +RGLH+Q P
Sbjct: 8 LPGCLVIEPRVFDDARGEFFEAWNAECFERQGMSSRFVQSNVSISM-YGVLRGLHYQW-P 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV + G ++D+AVDIRR SP YG WV++ +SA N Q++IP GFAHGF+ L
Sbjct: 66 RPQGKLVGVLEGEVYDVAVDIRRGSPHYGRWVAVLLSAKNKRQLWIPEGFAHGFVVLSER 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y TD Y E D+G+ W D I + WP+ P +S KDQ PF+ ++
Sbjct: 126 AVFNYLCTDVYVKEADAGIRWNDAVIGVDWPI---AAPLLSAKDQKAPFMEEV 175
>gi|111225335|ref|YP_716129.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia alni ACN14a]
gi|111152867|emb|CAJ64614.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase) (dTDP-L-rhamnose synthetase) [Frankia
alni ACN14a]
Length = 208
Score = 233 bits (596), Expect = 8e-60, Method: Composition-based stats.
Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 4/178 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ + R+ DSRG F + + S L E+ G Q NHS S GT+RG+H+
Sbjct: 6 LSVPDAWVFTPRQHSDSRGTFLEWFRSDALAEVVGHPLTLSQANHSVS-RAGTLRGVHYA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P +QAK V C+ GR+ D VDIR SPT+G + ++ + + +Y+ G H FM L
Sbjct: 65 QVPPSQAKYVTCVRGRVLDCVVDIRTGSPTFGTFAAVLLDDVDRRGLYVSEGLGHAFMAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ + Y + Y+ + GV D + + WP D + P +SEKD P L + +S
Sbjct: 125 TDDAAISYLCSTPYTPGREHGVDPLDPDLALPWP--DDLTPLLSEKDAAAPSLKEAES 180
>gi|15836862|ref|NP_297550.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa 9a5c]
gi|9105072|gb|AAF83070.1|AE003879_5 dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa 9a5c]
Length = 185
Score = 233 bits (596), Expect = 8e-60, Method: Composition-based stats.
Identities = 70/173 (40%), Positives = 104/173 (60%), Gaps = 5/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ R F+D+RG F + ++++ + G+ FVQ N S S G +RGLH+Q P
Sbjct: 8 LPGCLVIEPRVFDDARGEFFEAWNAECFQRQGMSSRFVQSNVSISM-YGVLRGLHYQW-P 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV + G ++D+AVDIRR SP YG WV++ +SA N Q++IP GFAHGF+ L
Sbjct: 66 RPQGKLVGVLEGEVYDVAVDIRRGSPHYGRWVAVLLSAKNKRQLWIPEGFAHGFVVLSER 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y TD Y E D+G+ W D I + WP+ +P +S KDQ PF+ ++
Sbjct: 126 AVFNYLCTDVYVKEADAGIRWNDALIGVDWPI---AVPLLSAKDQKAPFMEEV 175
>gi|254711650|ref|ZP_05173461.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella pinnipedialis B2/94]
gi|256029716|ref|ZP_05443330.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella pinnipedialis
M292/94/1]
gi|261319274|ref|ZP_05958471.1| dTDP-4-dehydrorhamnose reductase [Brucella pinnipedialis B2/94]
gi|265986727|ref|ZP_06099284.1| dTDP-4-dehydrorhamnose reductase [Brucella pinnipedialis M292/94/1]
gi|261298497|gb|EEY01994.1| dTDP-4-dehydrorhamnose reductase [Brucella pinnipedialis B2/94]
gi|264658924|gb|EEZ29185.1| dTDP-4-dehydrorhamnose reductase [Brucella pinnipedialis M292/94/1]
Length = 174
Score = 233 bits (596), Expect = 8e-60, Method: Composition-based stats.
Identities = 70/172 (40%), Positives = 109/172 (63%), Gaps = 3/172 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NIN L+ + +D RGWF++ Y E L+ F Q + SFS + GT+RGLH+Q
Sbjct: 6 LNINGAWSLEPERLKDERGWFARVYCEAAFAERKLETHFPQHSLSFSREKGTLRGLHYQN 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+++ KLV C+ G ++D+ VD+R +SPTY W +E+SA NG+Q+YIP G AHGF TL
Sbjct: 66 EPHSETKLVTCLQGIVWDVLVDLRPHSPTYRRWAGVELSAENGVQLYIPEGCAHGFQTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ + Y ++ Y+ +H +G+ + D ++DI WP ++ +S+KD PFL
Sbjct: 126 DDVLIRYMISKPYAPDHAAGIRYDDPALDIPWPEKPSV---ISQKDLGWPFL 174
>gi|157413784|ref|YP_001484650.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Prochlorococcus marinus str. MIT 9215]
gi|157388359|gb|ABV51064.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Prochlorococcus marinus str. MIT 9215]
Length = 192
Score = 233 bits (596), Expect = 8e-60, Method: Composition-based stats.
Identities = 70/182 (38%), Positives = 107/182 (58%), Gaps = 3/182 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+IN V ++K F D RG+F ++++S K++ F QDNHS S G +RG+H+Q
Sbjct: 13 SINEVILIKPDIFSDKRGFFYESWNSNSFKKIIGNTNFCQDNHSNSIK-GVLRGIHYQLN 71
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLVRC G I+D+AVD+R+ S TY W+ ++++ N +IP GF HGF+TL
Sbjct: 72 PTAQGKLVRCTKGEIYDVAVDLRKRSNTYKEWIGVKLNELNKNLFWIPEGFGHGFLTLSD 131
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS-PFE 180
EV YKVT + + + W D ++I WPL + I P +S+KD + + ++ F
Sbjct: 132 IAEVQYKVTKPWDKLSEKSLLWNDSDLNIDWPL-NKISPIISKKDALGITIKEAENMDFV 190
Query: 181 YD 182
+
Sbjct: 191 FQ 192
>gi|294053939|ref|YP_003547597.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coraliomargarita akajimensis
DSM 45221]
gi|293613272|gb|ADE53427.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Coraliomargarita akajimensis
DSM 45221]
Length = 178
Score = 233 bits (596), Expect = 8e-60, Method: Composition-based stats.
Identities = 66/173 (38%), Positives = 109/173 (63%), Gaps = 3/173 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + +++ D RG+F++TY ++ L+ G++ VQ N S+S GT+RGLH Q+
Sbjct: 6 LPLEGAWLIELEPRGDDRGYFARTYCAQELEAHGIESRVVQSNTSYSRYAGTMRGLHMQQ 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ ++KL+R +AG D+ VD+R SPTY +E+SA N +Y+P GFAHGF+TL
Sbjct: 66 APHEESKLMRAVAGSFLDVMVDLRPQSPTYLQHYKIELSAQNRRMVYVPGGFAHGFLTLV 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+TE +Y V+++Y+ ++GV + D ++ I WP+ + VSEKD+ P L+
Sbjct: 126 DHTEALYMVSEYYTPGAETGVRYDDPALGIEWPIP---VREVSEKDRTWPLLS 175
>gi|282897183|ref|ZP_06305185.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein [Raphidiopsis
brookii D9]
gi|281197835|gb|EFA72729.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein [Raphidiopsis
brookii D9]
Length = 181
Score = 233 bits (596), Expect = 9e-60, Method: Composition-based stats.
Identities = 63/174 (36%), Positives = 105/174 (60%), Gaps = 3/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ I++ + D RG+F++T+ ++ E GL+ Q N SF+ GT+RG+H+Q
Sbjct: 7 GLAGAFIIELEEKPDHRGFFARTFCAQEFAEHGLKPTVAQCNLSFNHQKGTLRGMHYQIT 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P + KL+RC G I+D+ VD+R SPTY ++ +E++A N +Y+P FAHG+ L
Sbjct: 67 PATETKLIRCTQGAIYDVIVDMRPESPTYLSYIGVELTATNRCALYVPEMFAHGYQALTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
EV+Y+V +FY+ ++ G+ + D +DI WPL T +S+KD++ P L +
Sbjct: 127 GAEVVYQVGEFYTPGYERGLRYDDPILDIVWPLNVT---EISQKDRSWPLLKSV 177
>gi|28198138|ref|NP_778452.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa Temecula1]
gi|182680768|ref|YP_001828928.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa M23]
gi|28056198|gb|AAO28101.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa Temecula1]
gi|182630878|gb|ACB91654.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa M23]
gi|307579234|gb|ADN63203.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 185
Score = 233 bits (596), Expect = 9e-60, Method: Composition-based stats.
Identities = 70/173 (40%), Positives = 103/173 (59%), Gaps = 5/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ R F+D+RG F + ++++ + G+ FVQ N S S G +RGLH+Q P
Sbjct: 8 LPGCLVIEPRVFDDARGEFFEVWNAECFEHQGMSSRFVQSNVSISI-YGVLRGLHYQW-P 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV + G ++D+AVDIRR SP YG WV++ +SA N Q++IP GFAHGF+ L
Sbjct: 66 RPQGKLVGVLEGEVYDVAVDIRRGSPHYGRWVAVLLSAKNKRQLWIPEGFAHGFVVLSER 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y TD Y E D+G+ W D I + WP+ P +S KDQ PF+ ++
Sbjct: 126 AVFNYLCTDVYVKEADAGIRWNDAVIGVDWPI---AAPLLSAKDQKAPFMEEV 175
>gi|120437611|ref|YP_863297.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gramella forsetii KT0803]
gi|117579761|emb|CAL68230.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gramella forsetii KT0803]
Length = 181
Score = 233 bits (596), Expect = 9e-60, Method: Composition-based stats.
Identities = 67/173 (38%), Positives = 102/173 (58%), Gaps = 3/173 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ ++K R FED RG F +TY K EL G+ + FVQDN S S G +RG+H+Q+
Sbjct: 8 LKDCFLIKPRIFEDHRGIFLETYQRKRFAELSGIDEEFVQDNQSVS-QFGVLRGMHYQKG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ K+VR I G++ D+ VD+R +SPT+ S + N Q+Y+PTGF HGF+TL
Sbjct: 67 EFAQTKIVRVIYGKVLDVVVDLRPDSPTFKKTFSTILDDQNLNQLYVPTGFGHGFLTLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ YK +Y+ ++G+ + D ++I W + + +SEKD+ LP Q
Sbjct: 127 KSVFAYKCDQYYTPGSEAGIIFNDPDLNINWNFPEREM-ILSEKDRVLPTFKQ 178
>gi|148558245|ref|YP_001257420.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella ovis ATCC 25840]
gi|148369530|gb|ABQ62402.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella ovis ATCC 25840]
Length = 174
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 69/172 (40%), Positives = 109/172 (63%), Gaps = 3/172 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NIN ++ + +D RGWF++ Y E L+ F Q + SFS + GT+RGLH+Q
Sbjct: 6 LNINGAWSIEPGRLKDERGWFARVYCEAAFAERKLETHFPQHSLSFSREKGTLRGLHYQN 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+++ KLV C+ G ++D+ VD+R +SPTY W +E+SA NG+Q+YIP G AHGF TL
Sbjct: 66 EPHSETKLVTCLQGIVWDVLVDLRPHSPTYRRWAGVELSAENGVQLYIPEGCAHGFQTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ + Y ++ Y+ +H +G+ + D ++DI WP ++ +S+KD PFL
Sbjct: 126 DDVLIRYMISKPYAPDHAAGIRYDDPALDIPWPEKPSV---ISQKDLGWPFL 174
>gi|71276345|ref|ZP_00652622.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa Dixon]
gi|71901359|ref|ZP_00683453.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa Ann-1]
gi|170729450|ref|YP_001774883.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa M12]
gi|71162807|gb|EAO12532.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa Dixon]
gi|71728858|gb|EAO30995.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa Ann-1]
gi|167964243|gb|ACA11253.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylella fastidiosa M12]
Length = 185
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 68/173 (39%), Positives = 102/173 (58%), Gaps = 5/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ R F+D+RG F + ++++ + G+ FVQ N S S G +RGLH+Q P
Sbjct: 8 LPGCLVIEPRVFDDARGEFFEAWNAECFERQGMSSRFVQSNVSISM-YGVLRGLHYQW-P 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLV + G ++D+AVDIR SP YG WV++ +SA N Q++IP GFAHGF+ L
Sbjct: 66 RPQGKLVGVLEGEVYDVAVDIRLGSPHYGRWVAVLLSAKNKRQLWIPEGFAHGFVVLSER 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y TD Y E D+G+ W D + + WP+ P +S KDQ PF+ ++
Sbjct: 126 AVFNYLCTDVYVKEADAGIRWNDAVLGVDWPI---ATPLLSAKDQKAPFMEEV 175
>gi|294853750|ref|ZP_06794422.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella sp. NVSL 07-0026]
gi|294819405|gb|EFG36405.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella sp. NVSL 07-0026]
Length = 174
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 68/172 (39%), Positives = 108/172 (62%), Gaps = 3/172 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NIN ++ + +D RGWF++ Y E L+ F Q + SFS + GT+RGLH+Q
Sbjct: 6 LNINGAWSIEPERLKDERGWFARVYCEAAFAERKLETHFPQHSLSFSREKGTLRGLHYQN 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+++ KLV C+ G ++D+ D+R +SPTY W +E+SA NG+Q+YIP G AHGF TL
Sbjct: 66 EPHSETKLVTCLQGIVWDVLADLRPHSPTYRRWAGVELSAENGVQLYIPEGCAHGFQTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ + Y ++ Y+ +H +G+ + D ++DI WP ++ +S+KD PFL
Sbjct: 126 DDVLIRYMISKPYAPDHAAGIRYDDPALDIPWPEKPSV---ISQKDLGWPFL 174
>gi|17230322|ref|NP_486870.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nostoc sp. PCC 7120]
gi|17131924|dbj|BAB74529.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nostoc sp. PCC 7120]
Length = 189
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 61/172 (35%), Positives = 106/172 (61%), Gaps = 3/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ I+ + D RG+F++T+ + GL+ V Q N S+++ GT+RG+H+Q
Sbjct: 7 SLKDAFIIDLEEKPDHRGFFARTFCANEFANHGLKPVVAQCNLSYNYKKGTLRGMHYQLR 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P A+ KL+RCI G I+D+ +D+R SPT+ + +E++A+N +Y+P FAHG+ L
Sbjct: 67 PAAETKLIRCIKGAIYDVIIDMRPESPTFLSHIGVELTADNRRALYVPEMFAHGYQALTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ EV+Y+V +FY+ ++ G+ + D +I WPL T+ +S+KD + P L
Sbjct: 127 DAEVVYQVGEFYTPGYEKGLRYNDPFFNIEWPLDVTV---ISDKDASWPLLE 175
>gi|799235|gb|AAC63615.1| RmlC [Escherichia coli]
Length = 183
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 72/177 (40%), Positives = 106/177 (59%), Gaps = 7/177 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + + F D RG+F ++++ K+ +E G + FVQDNHS S G IRGLHFQ
Sbjct: 7 EIPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVEFVQDNHSKS-TKGVIRGLHFQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVS-LEISANNGLQIYIPTGFA-HGFMT 118
PPY+QAKLVRC+ G ++D+ VDIR++S T+G WV + +SA N Q++IP GF HGF
Sbjct: 66 PPYSQAKLVRCVVGEVYDVVVDIRKDSKTFGKWVRLVNLSAENKRQLWIPEGFGSHGFEV 125
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ +YK ++Y+ + G+ W D+ + I W +SEKD P ++
Sbjct: 126 ISEVASFLYKTNNYYNATMEKGIRWDDEYLAINW---KEKKAIISEKDMKQPSFREL 179
>gi|186681547|ref|YP_001864743.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nostoc punctiforme PCC 73102]
gi|186463999|gb|ACC79800.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nostoc punctiforme PCC 73102]
Length = 184
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 61/171 (35%), Positives = 101/171 (59%), Gaps = 3/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ I+ + D RG+F++++ ++ + GL+ Q N SF++ GTIRG+H+Q P
Sbjct: 8 LKDAFIIDLEEKPDHRGFFARSFCAQEFEAHGLKPTVAQCNLSFNYKKGTIRGMHYQILP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
A+ KL+RC G I+D+ +D+R SP++ + +E++ N +Y+P FAHG+ L
Sbjct: 68 AAETKLIRCTKGAIYDVIIDMRPESPSFLSHIGVELTPENRRALYVPEMFAHGYQALTDE 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
TEV+Y+V +FY+ ++ G+ + D I WPL T +SEKD N P L
Sbjct: 128 TEVVYQVGEFYTPGYERGLRYDDPFFAIDWPLDVT---EISEKDLNWPLLR 175
>gi|153010710|ref|YP_001371924.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ochrobactrum anthropi ATCC
49188]
gi|151562598|gb|ABS16095.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ochrobactrum anthropi ATCC
49188]
Length = 174
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 68/172 (39%), Positives = 107/172 (62%), Gaps = 3/172 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NI+ ++ + ED RGWF++ Y E ++ F Q + SFS + GT+RGLH+Q
Sbjct: 6 LNIDGAWSIEPERLEDERGWFARVYCEAAFAERQMETHFPQHSLSFSREEGTLRGLHYQN 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+++ KLV C+ G I+D+ VD+R +SPTY W +E+SA NG+Q+YIP G AHGF TL
Sbjct: 66 EPHSETKLVTCLQGVIWDVLVDLRPHSPTYRRWAGVELSAENGVQLYIPEGCAHGFQTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ V Y ++ Y+ ++ +G+ + D S+ I WP ++ +S+KD P L
Sbjct: 126 SDVLVRYMISKPYAPDYATGLRYDDPSLGIPWPNRPSV---ISDKDLAWPLL 174
>gi|24940618|gb|AAN65245.1|AF329398_35 dTDP-4-keto-6-deoxyglucose 3,5-epimerase [Streptomyces
roseochromogenes subsp. oscitans]
Length = 198
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 54/176 (30%), Positives = 80/176 (45%), Gaps = 5/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + R+ D+RG F Y E+G Q N S S G +RG+HF
Sbjct: 6 LGIEGVWEITPRQHADARGVFLDWYCVDRFAAEVGRPLRLAQANLSVSAR-GVLRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G +FD+ VD+R S TYG W + + +Y+ G HGF +
Sbjct: 65 DVPPGQAKYVTCVRGAVFDVVVDLRVGSSTYGRWEGTRLDDVSRRAVYLSEGIGHGFCAI 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ Y + Y+ + GV D + I WP P +S +DQ+ L++
Sbjct: 125 SDEATLCYLCSQTYNPASEHGVHPLDPELAINWP---AGTPLLSARDQDALLLSEA 177
>gi|256397295|ref|YP_003118859.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Catenulispora acidiphila DSM
44928]
gi|256363521|gb|ACU77018.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Catenulispora acidiphila DSM
44928]
Length = 200
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 58/176 (32%), Positives = 84/176 (47%), Gaps = 5/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I+ + R D RG F++ Y LL E G Q N S S G +RG+HF
Sbjct: 6 LSIDGAWEITPRLHGDPRGLFTEWYRFDLLAEAVGHPLDLRQGNLSVSA-AGVVRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C G + D+ DIR SPT+G W + + + +YI G HGF L
Sbjct: 65 DVPPGQAKYVTCTRGAVLDVIADIRVGSPTFGQWQGVRLDEDTRKAVYIAEGLGHGFCAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + Y + Y+ H+ GV D + I WP +P +SE+D+ P L +
Sbjct: 125 TDDATLTYLCSATYNPGHEHGVYPLDAELGIDWPAE---VPHLSERDEKSPSLAEA 177
>gi|294506497|ref|YP_003570555.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Salinibacter ruber
M8]
gi|294342825|emb|CBH23603.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Salinibacter ruber
M8]
Length = 186
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 68/174 (39%), Positives = 98/174 (56%), Gaps = 5/174 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ VR+++ + D RG F++ ++ + GL FVQDN S S + G +RGLHFQ
Sbjct: 7 SLPGVRLIEPDVYLDDRGSFAEMWNVRDYGHHGLDVTFVQDNLSRSRE-GVLRGLHFQN- 64
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL+ + G ++D+ VD+R S T+G W +SA +G Q+Y P G+AHGF+
Sbjct: 65 PRAQGKLISVLEGAVYDVVVDVRTGSDTFGDWEGQVLSAESGRQLYAPEGYAHGFVATSG 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK TDFY E D V W D ++ I WP D P +S KD P L ++
Sbjct: 125 EVLFHYKCTDFYHPEADRTVRWDDPALAIDWPTED---PILSAKDAGAPALEEL 175
>gi|254468688|ref|ZP_05082094.1| dTDP-4-dehydrorhamnose 3,5-epimerase [beta proteobacterium KB13]
gi|207087498|gb|EDZ64781.1| dTDP-4-dehydrorhamnose 3,5-epimerase [beta proteobacterium KB13]
Length = 174
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 72/170 (42%), Positives = 108/170 (63%), Gaps = 5/170 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V++++ FED RG+F ++++ +G + FVQDN S S G +RGLH+Q
Sbjct: 6 LKIPEVKLIEPDVFEDERGFFYESFNQHEFNNAIGQEISFVQDNQSKS-KKGVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P++Q KLVR I+G++FD+AVDIR S TYG WV+ ++ N Q++IP GFAHGF++L
Sbjct: 65 KSPFSQGKLVRVISGQVFDVAVDIREGSETYGNWVAEVLTGENKKQLWIPEGFAHGFLSL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
E +T YKV+++YS H+ + K ITWP LD +S+KD
Sbjct: 125 ENDTVFSYKVSNYYSSYHEVSINPFLKEFSITWPQLDY---LLSDKDLKA 171
>gi|887635|emb|CAA61415.1| strX [Streptomyces glaucescens]
gi|3256045|emb|CAA07373.1| StrX [Streptomyces glaucescens]
Length = 182
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 58/175 (33%), Positives = 105/175 (60%), Gaps = 3/175 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ + D RG+FS+++ + + GL+ VQ N SF+ G++RG H+Q P
Sbjct: 8 LAGAALIELSELRDERGFFSRSFCREEFERAGLEPAVVQCNLSFNHRAGSLRGFHYQTEP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
A+AK +RC G I+D+ VD+R +SPT+ E++A+N L +++P FAH ++TL +
Sbjct: 68 NAEAKTIRCTRGAIYDVIVDLRPDSPTFLRHFGAELTADNRLALHVPRNFAHAYLTLADD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
TE +Y+V+ Y+ + G+ W D ++ + WP + VS+KD P L+++ +
Sbjct: 128 TETVYQVSAAYTPGAERGLRWNDPALGVEWPAP---VKLVSDKDAGWPLLSEVPA 179
>gi|163789264|ref|ZP_02183706.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Flavobacteriales bacterium
ALC-1]
gi|159875479|gb|EDP69541.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Flavobacteriales bacterium
ALC-1]
Length = 181
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 69/176 (39%), Positives = 104/176 (59%), Gaps = 3/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I+K + +D RG+F + Y+ K + LG++ FVQDN S S G +RGLH+Q
Sbjct: 7 KLKGCFIIKPQVIKDKRGYFIENYNQKTFNEALGIEINFVQDNESLS-TKGVLRGLHYQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
YAQAKLVR I G++ D+ VD+R S T+G +++E+S N +++P GFAHGF+ LE
Sbjct: 66 GKYAQAKLVRVIKGKVLDVVVDLRPKSSTFGEHLTIELSEKNMTHLFVPRGFAHGFLVLE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
T YK +FY+ ++G+ + DK ++I W L L +S KD+ LP
Sbjct: 126 NQTIFSYKCDNFYNKTSEAGIIYNDKDLNINWELSKKEL-IISNKDKILPKFKDAK 180
>gi|294138870|ref|YP_003554848.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella violacea DSS12]
gi|293325339|dbj|BAJ00070.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella violacea DSS12]
Length = 181
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 71/173 (41%), Positives = 103/173 (59%), Gaps = 3/173 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I +++L R ED RG F +T+ ++ FVQ+NHS S G +RGLHFQ P
Sbjct: 8 IADLKLLSPRVHEDERGCFCETFRDSWFRQQIADVTFVQENHSRSIK-GCLRGLHFQ-SP 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+Q KL+R + G IFD+AVD+R++SP+ G W +SA N Q+++P GFAHGF +
Sbjct: 66 RSQGKLIRVVVGEIFDVAVDLRKHSPSLGQWFGTYLSAKNRQQMWLPAGFAHGFYVTSDS 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E+IYK TD+Y+ E + + W D ++ I WPL LP +S KD+ + I
Sbjct: 126 AEIIYKCTDYYAPEFEKTLTWDDDTLAIDWPLRGQ-LPILSSKDKIGLSFDDI 177
>gi|108798038|ref|YP_638235.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium sp. MCS]
gi|119867133|ref|YP_937085.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium sp. KMS]
gi|126433699|ref|YP_001069390.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium sp. JLS]
gi|108768457|gb|ABG07179.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium sp. MCS]
gi|119693222|gb|ABL90295.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium sp. KMS]
gi|126233499|gb|ABN96899.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium sp. JLS]
Length = 195
Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats.
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 4/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + + DSRG F + ++ + G + Q N S S G +RGLHF
Sbjct: 6 LAVPGAWEITPTVHADSRGSFMEWFTDREFTAFAGHRLDVRQANCSVS-RAGVLRGLHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G +FD+AVDIR SPT+G W ++ + + IY+ G H F+ L
Sbjct: 65 AVPPGQAKYVTCVRGAVFDVAVDIRVGSPTFGRWDAVLLDDRDRRSIYLSEGLGHAFLAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ ++ V+Y + Y + V+ D ++ I WP + +S++D P L+Q
Sbjct: 125 QDDSTVMYLCSTGYDPAREHTVSPTDPALGIEWPFDGEL--VLSDRDAAAPTLDQA 178
>gi|309780789|ref|ZP_07675530.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia sp. 5_7_47FAA]
gi|308920471|gb|EFP66127.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ralstonia sp. 5_7_47FAA]
Length = 183
Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats.
Identities = 67/157 (42%), Positives = 98/157 (62%), Gaps = 3/157 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++ V IL+ + F D+RG+F +++++K + G Q FVQDNHS S +RGLH+Q
Sbjct: 9 SLPEVLILEPKVFGDARGFFFESFNAKSFEVATGCQRAFVQDNHSRSAHK-VLRGLHYQV 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR +AG +FD+AVD+R++SP +G W +SA N Q+++P GFAHGF+ L
Sbjct: 68 V-RPQGKLVRVVAGEVFDVAVDLRKSSPNFGKWAGAVLSAENKRQLWVPEGFAHGFVVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDT 157
+ E +YK TD++ EH+ V W D I I WP
Sbjct: 127 DSAEFLYKTTDYWYPEHERSVLWNDSDIGIEWPFKGE 163
>gi|319953124|ref|YP_004164391.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Cellulophaga algicola DSM
14237]
gi|319421784|gb|ADV48893.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cellulophaga algicola DSM
14237]
Length = 181
Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 104/175 (59%), Gaps = 3/175 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ +++ +KFED RG+F ++++ + EL + FVQDN S+S G IR +H+Q+
Sbjct: 8 LKGCFVIEPKKFEDDRGYFFESFNEEKFNELTETETKFVQDNQSYS-TRGVIRAIHYQKG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
YAQAKLVR + G + DIAVD+RR+S T+G ++E+S N Q+YIP GF HGF L
Sbjct: 67 IYAQAKLVRVLKGTVLDIAVDLRRDSSTFGKHYAIELSEKNNKQLYIPRGFGHGFSVLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YK +FY+ + G+ + D+ ++I W + D L VS KD LP N
Sbjct: 127 TAVFFYKCDNFYNAASEGGIIYNDEELNIDWKVEDKYL-KVSSKDLILPKFNNAK 180
>gi|227819574|ref|YP_002823545.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium fredii NGR234]
gi|227338573|gb|ACP22792.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium fredii NGR234]
Length = 179
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 70/176 (39%), Positives = 103/176 (58%), Gaps = 3/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V +++ D RG F++ + K + + GL FVQ + S S GT+RGLHFQ
Sbjct: 7 ELKGVWLIEPTPVIDDRGSFTRVFCEKEMADFGLATRFVQHSRSHSVRKGTLRGLHFQEE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ + KLV C G IFD+ VD+R NSPT W+ E++ N Q+YIP GFAHGF TL
Sbjct: 67 PHTEVKLVSCACGAIFDVVVDLRPNSPTRNRWLGFELTPENMKQVYIPAGFAHGFQTLTE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ EV Y ++ FY+ +GV + D + I WPL+ T +SE+D+ P + ++ S
Sbjct: 127 DAEVSYLISQFYTPHAATGVRFNDPAFSINWPLMPTA---MSERDRTWPLVRKLVS 179
>gi|315654769|ref|ZP_07907674.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus curtisii ATCC
51333]
gi|315490730|gb|EFU80350.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus curtisii ATCC
51333]
Length = 205
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 62/180 (34%), Positives = 90/180 (50%), Gaps = 6/180 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + ++F D RG F + Y E+ G VQ N S S G +RG+HF
Sbjct: 6 LKIAGAWEITPKQFPDERGAFMEMYKMGEFAEVVGHPLNLVQANCSIS-KAGVVRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V C G + D AVDIR SPT+G W S+ + + IY+ G H F+ L
Sbjct: 65 EVPPSQAKYVMCPRGAVLDFAVDIRVGSPTFGQWDSVLLEGEHRRAIYLSEGLGHCFVAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQI 175
E N+ V+Y ++ Y+ H+ GV+ D + + WP D + +SEKD P L +
Sbjct: 125 EDNSTVVYLCSEGYNPGHEHGVSPVDPEVALKWPDHDLAGRPLEVILSEKDTAAPSLTEA 184
>gi|311744958|ref|ZP_07718743.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Algoriphagus sp. PR1]
gi|126577465|gb|EAZ81685.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Algoriphagus sp. PR1]
Length = 184
Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats.
Identities = 69/174 (39%), Positives = 104/174 (59%), Gaps = 5/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V + + FED RG+F +++ S L++ G ++ ++QDN SFS GT+RGLHFQR
Sbjct: 9 ISGVLEIFPKVFEDQRGYFFESFRSDWLEQHGCKENWIQDNQSFS-QKGTVRGLHFQRGD 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQAKLVR I G++ D+ VD+R+ S T+G S + +Y+PTGFAHGF LE
Sbjct: 68 HAQAKLVRVIQGKVLDVVVDLRKGSETFGAHYSTILDTEQHNLLYVPTGFAHGFSVLED- 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+YK +++Y E + G+ W D + I W + + P +SEKD L +
Sbjct: 127 AIFVYKCSNYYHKESEGGILWNDSHLGIDWMVDN---PIISEKDAQWQKLQEFK 177
>gi|148380673|ref|YP_001255214.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum A str.
ATCC 3502]
gi|153933465|ref|YP_001384957.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum A str.
ATCC 19397]
gi|153936831|ref|YP_001388427.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum A str.
Hall]
gi|148290157|emb|CAL84276.1| probable DTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium
botulinum A str. ATCC 3502]
gi|152929509|gb|ABS35009.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum A str.
ATCC 19397]
gi|152932745|gb|ABS38244.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum A str.
Hall]
Length = 177
Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats.
Identities = 71/168 (42%), Positives = 103/168 (61%), Gaps = 2/168 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
V IL+ ED RG+F++T+ + K GL VQ N SF+ GT+RG+H+Q P
Sbjct: 7 KFKGVYILEIEPIEDERGFFARTWCEEEFKVYGLNSNLVQCNISFNKRRGTLRGMHYQIP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY +AKLVRC G I+D+ +D+R NS T+ W ++E++ N +YIP GFAHGF TLE
Sbjct: 67 PYEEAKLVRCTKGSIYDVIIDLRPNSKTFKQWTAIELTDENRKMLYIPEGFAHGFQTLED 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
+TEV Y+++ FY E G+ W D + + WP+ + +S KD+N
Sbjct: 127 DTEVFYQMSQFYHPECARGIRWDDLTFSVDWPVRGDV--IISYKDKNW 172
>gi|124486242|ref|YP_001030858.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanocorpusculum labreanum
Z]
gi|124363783|gb|ABN07591.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanocorpusculum labreanum
Z]
Length = 193
Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats.
Identities = 71/172 (41%), Positives = 107/172 (62%), Gaps = 3/172 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ + I++T F D RG F++ + + L + + N S + G+IRG+HFQ+PP
Sbjct: 11 LKGLYIVETNAFIDHRGAFARWFCEEELAAVLGKRHIKNVNFSRTVKKGSIRGMHFQKPP 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+A+ KLVRCI GRI D+ VDIR SPT+ S+E+SA N +P GFAHGF +LE +
Sbjct: 71 HAEMKLVRCIRGRILDVVVDIRAGSPTFLQHYSVELSAENMKMFAVPEGFAHGFQSLEDD 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+E++Y VT+FYS E ++G+ + D ++ I WPL + +SEKD P +N
Sbjct: 131 SEIMYLVTEFYSPESEAGLRFSDPALKIEWPLP---VMDISEKDGKHPLVND 179
>gi|86135157|ref|ZP_01053739.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Polaribacter sp. MED152]
gi|85822020|gb|EAQ43167.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Polaribacter sp. MED152]
Length = 176
Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats.
Identities = 64/166 (38%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ +++ ++D RG F ++++ + + +G FVQDN S S G IR LH Q+
Sbjct: 8 LKGCFVIEPTVYKDERGTFVESFNQQEFEKAIGTTVNFVQDNESVS-KKGVIRALHMQKE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY+QAKLVR + GR+ D+AVD R++SPT+G S+E+S NG Q++IP F HGF TLE
Sbjct: 67 PYSQAKLVRVVKGRVLDVAVDCRKDSPTFGQHFSIELSRENGKQLFIPRNFLHGFSTLED 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
+T YK ++Y + G+ + D ++ I W + + +SEKD
Sbjct: 127 DTIFNYKCDNYYQRGSELGIIYNDATLGIDWKIGSEEI-ILSEKDA 171
>gi|251781241|ref|ZP_04824157.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243081688|gb|EES47749.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 195
Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V +++ F+D +G+ ++ Y+ K + G+ +FVQ+ F G ++G+HFQ+
Sbjct: 8 KIDGVYVIEPGVFKDEKGYCTEMYNKKQFLKAGINMIFVQE-FEFESKKGMLKGIHFQKQ 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q L++ G F +AVD+R S T+G W S ++ N Q+YIP GFAHGF+TL
Sbjct: 67 NN-QGSLIKVTKGEGFIVAVDLRYGSTTFGKWESFILNEENKKQVYIPEGFAHGFLTLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YK T+ Y E + G+ W D I+I WPL +SEKD+ P ++
Sbjct: 126 EATFNYKCTEIYDPEDNWGIMWNDPDINIKWPLEKIENVILSEKDKLYPRFKDLN 180
>gi|149909224|ref|ZP_01897881.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Moritella sp. PE36]
gi|149807748|gb|EDM67694.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Moritella sp. PE36]
Length = 177
Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats.
Identities = 65/175 (37%), Positives = 101/175 (57%), Gaps = 6/175 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I+ +++ F D RG+F +T+ + ++ LG + FVQDN+S S +RGLHFQ+
Sbjct: 7 SIDGALVIEPDVFGDERGFFMETFQAARYRDVLGGEFDFVQDNYSRSSK-NVLRGLHFQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G ++D+AVDIR SPTYG L ++A N LQ ++P G AHGF+ L
Sbjct: 66 T-KQQGKLVRVVLGDVYDVAVDIRLASPTYGQCHGLRLNAENKLQFWLPPGLAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK T++Y + + W D ++I WP + P +S+KD+ N +
Sbjct: 125 DLADFEYKCTNYYDNRDEGCLIWNDPVLNIDWPCDN---PLLSDKDKMGLKFNDL 176
>gi|330816479|ref|YP_004360184.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia gladioli BSR3]
gi|327368872|gb|AEA60228.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia gladioli BSR3]
Length = 183
Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats.
Identities = 68/175 (38%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+I++ F D+RG+F ++++++ +E + FVQDNHS S G +RGLH+Q
Sbjct: 10 LPEVKIIEPAVFGDTRGFFYESFNAREFEESVAQGFEFVQDNHSRSMR-GVLRGLHYQIV 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR +AG +FD+AVD+R +SP +G W + +SA N Q++IP GFAHGF+ L +
Sbjct: 69 -RPQGKLVRVVAGEVFDVAVDLRLSSPHFGKWAGVRLSAKNYRQLWIPPGFAHGFVVLSV 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E +YK TD++ E++ + W D I I WP+ P ++ KD L + +
Sbjct: 128 SAEFVYKATDYWFPEYERSLLWSDPMIKIDWPIE--QAPLLAAKDAEGKPLFEAE 180
>gi|300865163|ref|ZP_07109987.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oscillatoria sp. PCC 6506]
gi|300336853|emb|CBN55137.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oscillatoria sp. PCC 6506]
Length = 184
Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats.
Identities = 74/185 (40%), Positives = 107/185 (57%), Gaps = 9/185 (4%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M I P+++ + +D RG+F + Y + ++ GL ++Q+N SFS G IRG
Sbjct: 4 MEIKPLKLQGTYQITLAPRKDDRGYFMRAYDEAIFRDHGLTTAWLQENQSFS-KKGVIRG 62
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LHFQ+PP+A+ KLVR ++G+I D+ VD+R+NS TYG W S+E+S N YIP GFAHG
Sbjct: 63 LHFQKPPHAETKLVRVVSGKILDVFVDLRKNSNTYGQWDSIELSEENHKIAYIPKGFAHG 122
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F +L V+YKV + Y E + + W D+++ I W + P S KD N
Sbjct: 123 FCSLTETALVLYKVDEIYYPESEGNLRWNDETLAIKWTID---RPLTSSKDAQGESFNDF 179
Query: 176 DSPFE 180
SPF
Sbjct: 180 ISPFV 184
>gi|296130190|ref|YP_003637440.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cellulomonas flavigena DSM
20109]
gi|296022005|gb|ADG75241.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cellulomonas flavigena DSM
20109]
Length = 210
Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats.
Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 6/182 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ + ++ D RG F + + E G Q N S S G +RG+HF
Sbjct: 6 LSVPGAWEITPKQHGDPRGVFLEYFKGGPFAEATGHAFDLQQANCSVSA-AGVLRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C G + D+ VDIR SPT+G W ++ + + IY+ G H FM+L
Sbjct: 65 DVPPGQAKYVTCAKGAVLDVVVDIRVGSPTFGRWDTVLLDDTDRRAIYLGEGLGHAFMSL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPFLNQI 175
E ++ V+Y + Y+ + G+ D I ITWP + P +SEKD P L +
Sbjct: 125 EDDSTVLYLCSTGYAPGREHGIHPLDPEIGITWPTTARDGSPLTPQLSEKDTAAPTLAEA 184
Query: 176 DS 177
+
Sbjct: 185 RA 186
>gi|225873478|ref|YP_002754937.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidobacterium capsulatum
ATCC 51196]
gi|225794039|gb|ACO34129.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidobacterium capsulatum
ATCC 51196]
Length = 181
Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats.
Identities = 66/174 (37%), Positives = 99/174 (56%), Gaps = 3/174 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V +++ R F D RG F +T++ + + E GL + QDN S S +RG+H+Q
Sbjct: 8 LPEVLVIRPRIFRDDRGSFWETWNERTIAEAGLPAEWKQDNTSVS-KKNVVRGIHYQILQ 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR AGRI D+AVD+RR+SP +G +++E+S ++ ++IP GF H F+ L +
Sbjct: 67 P-QGKLVRAAAGRILDVAVDLRRSSPNFGKHIAVELSGDDSAMLWIPVGFGHAFVALTDD 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
V YKVTD+YS + + W D I I WP+ VS KD + L +
Sbjct: 126 ARVAYKVTDYYSPAGERTILWNDPQIGIDWPVR-ADEAIVSAKDADGKRLADAE 178
>gi|300770496|ref|ZP_07080375.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingobacterium spiritivorum
ATCC 33861]
gi|300762972|gb|EFK59789.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sphingobacterium spiritivorum
ATCC 33861]
Length = 182
Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats.
Identities = 67/175 (38%), Positives = 103/175 (58%), Gaps = 3/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ +L+ K+ DSRG+F ++++ K +L G FVQDN S+S G +RGLH Q
Sbjct: 7 KLQGCFVLEPDKYGDSRGYFMESFNEKTFNDLTGTSTHFVQDNQSYS-TRGVLRGLHAQA 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
YAQAKLVR + G + DIAVD+R S T+G V++ +SA+N LQ+++P GF HGF+ L
Sbjct: 66 GDYAQAKLVRVLEGEVIDIAVDVRAGSSTFGQHVAVRLSADNNLQLFVPRGFLHGFVVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK +FY+ E + GV D+ + I W + + +S+KD+ ++
Sbjct: 126 ETATFFYKCDNFYNKESECGVHPLDEDLAIDWKIPVEEM-ILSDKDKEAKGFKEV 179
>gi|187934909|ref|YP_001887609.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum B str.
Eklund 17B]
gi|187723062|gb|ACD24283.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum B str.
Eklund 17B]
Length = 195
Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats.
Identities = 60/175 (34%), Positives = 98/175 (56%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V +++ F+D +G+ ++ Y+ K + G+ +FVQ+ F G ++G+HFQ+
Sbjct: 8 KMDGVYVIEPGVFKDEKGYCTEMYNKKQFLKAGINMIFVQE-FEFESKKGMLKGIHFQKQ 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q L++ G F +AVD+R S T+G W S ++ N Q+YIP GFAHGF+TL
Sbjct: 67 -HNQGSLIKVTKGEGFIVAVDLRYGSLTFGKWESFILNEENKKQVYIPEGFAHGFLTLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YK T+FY E + G+ W D I+I WPL +SE+D+ P ++
Sbjct: 126 EAIFNYKCTEFYDPEDNGGIMWNDPDINIKWPLEKIENVILSERDKLYPRFKDLN 180
>gi|228994849|ref|ZP_04154646.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus pseudomycoides DSM
12442]
gi|228764896|gb|EEM13653.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus pseudomycoides DSM
12442]
Length = 171
Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats.
Identities = 80/171 (46%), Positives = 111/171 (64%), Gaps = 3/171 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F D+RG+F ++Y+ K+L+ LG+ FVQDN S+S + G IRGLHFQ P AQ KLV+ I
Sbjct: 2 FHDARGYFKESYNEKVLRHLGIHHKFVQDNTSYSKEAGVIRGLHFQLEPRAQTKLVQVIQ 61
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G IFD+ VD+R+ SPTY W S ++ +N + +P GFAHGF TL +T V YKV +FY
Sbjct: 62 GAIFDVIVDLRKGSPTYKKWQSFLLTGDNHRLLLVPKGFAHGFCTLVPHTIVHYKVDEFY 121
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGL 184
DSG+AW D+ I+WP+ + P +SEKD LP N+ F++ +
Sbjct: 122 DASCDSGIAWNDEEFAISWPVSN---PVLSEKDGMLPKFNETTHYFQFKEI 169
>gi|298491812|ref|YP_003721989.1| dTDP-4-dehydrorhamnose 3,5-epimerase ['Nostoc azollae' 0708]
gi|298233730|gb|ADI64866.1| dTDP-4-dehydrorhamnose 3,5-epimerase ['Nostoc azollae' 0708]
Length = 181
Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats.
Identities = 66/174 (37%), Positives = 103/174 (59%), Gaps = 3/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ I+ + D RG+F++T+ ++ GL+ Q N SF+ GT+RG+H+Q
Sbjct: 7 ELPGAFIIDLEEKPDQRGFFARTFCAQEFANHGLKPTVAQCNLSFNHIKGTLRGMHYQLL 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P A+ KLVRC G I+D+ VD+R PTY + LE+SA N +Y+P FAHG+ L
Sbjct: 67 PAAETKLVRCTQGAIYDVIVDMRPEFPTYLSHIGLELSAENRRALYVPEMFAHGYQALTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
EV+Y+V +FY+ ++ G+ + D ++I+WPL T +S+KD+N P L I
Sbjct: 127 GAEVVYQVGEFYTPGYERGLRYDDPLLEISWPLAAT---EMSDKDRNWPLLESI 177
>gi|86742432|ref|YP_482832.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. CcI3]
gi|86569294|gb|ABD13103.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. CcI3]
Length = 207
Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats.
Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 4/178 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ + R+ DSRG F + + S L E G Q NHS S GT+RG+H+
Sbjct: 6 LSVPDAWVFTPRQHSDSRGTFLEWFRSDALAEAVGHPLTLSQANHSVS-RAGTLRGVHYA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P +QAK V C+ GR+ D VDIR SPTYG + ++ + + +Y+ G H FM L
Sbjct: 65 QVPPSQAKYVTCVHGRVLDCVVDIRVGSPTYGTFAAVVLDDVDRRGLYVAEGLGHAFMAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ + Y + Y+ + GV D + + WP D + P +S+KD P L + ++
Sbjct: 125 TDDAAISYLCSTPYTPGREYGVHPLDPDLALPWP--DDLAPLLSDKDTAAPSLKEAEA 180
>gi|149369374|ref|ZP_01889226.1| dTDP-4-dehydrorhamnose 3,5-epimerase [unidentified eubacterium
SCB49]
gi|149356801|gb|EDM45356.1| dTDP-4-dehydrorhamnose 3,5-epimerase [unidentified eubacterium
SCB49]
Length = 182
Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats.
Identities = 69/174 (39%), Positives = 103/174 (59%), Gaps = 3/174 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ +L+ FED RG F +T++ K E+ GL+ FVQDN S S G +RGLH+Q+
Sbjct: 8 LKDCFVLQPNVFEDERGIFIETFNEKTFNEITGLKTAFVQDNQSRS-TRGVLRGLHYQKG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQ+KLVR GR+ DI VD+R++SPT+G S+ + Q+++P GFAHGF+TL
Sbjct: 67 DFAQSKLVRVAKGRVLDIVVDLRKDSPTFGQHFSIILDDLTHQQLFVPRGFAHGFITLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK + Y E + G+ + D ++ + W L L VSEKD+ LP +
Sbjct: 127 TSVFAYKCDNLYHKEAEGGIIYNDATLQLDWHLPQEEL-IVSEKDKALPSFEKA 179
>gi|298372513|ref|ZP_06982503.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroidetes oral taxon 274
str. F0058]
gi|298275417|gb|EFI16968.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroidetes oral taxon 274
str. F0058]
Length = 182
Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats.
Identities = 68/172 (39%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + ++ F DSRG+F++ Y+ + G+ + FVQDN S S G +RGLH Q+
Sbjct: 8 IKDLIVVCPDVFADSRGYFTELYNENRYRAYGIDNNFVQDNLSRSS-YGVVRGLHLQKGE 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQAKLV+ I G+++D+AVD+R+ S TYG W +E+S N LQ IP GFAHGF L
Sbjct: 67 SAQAKLVKVIVGKVWDVAVDLRQGSSTYGEWFGVELSDENHLQFLIPRGFAHGFSVLSPT 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
YK + Y + + G+ + D ++ I W + + VS+KD LP +Q
Sbjct: 127 AIFSYKCDNIYDKQAEGGIIYNDPTLAIDWKVPVGEM-IVSDKDLLLPTFDQ 177
>gi|282891818|ref|ZP_06300298.1| hypothetical protein pah_c198o003 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281498251|gb|EFB40590.1| hypothetical protein pah_c198o003 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 185
Score = 230 bits (588), Expect = 7e-59, Method: Composition-based stats.
Identities = 70/171 (40%), Positives = 108/171 (63%), Gaps = 3/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ ++ K D RG+F++ + K + GL+ VQ N+S+S + GT+RGLH+Q PP
Sbjct: 8 LKDAFLIDLNKLGDERGFFARLFCQKEFTQQGLEPAVVQVNNSYSVEKGTLRGLHYQLPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ + KLVRCI G ++D+ VD+R +SPT+ +SA N L +Y+P GFAHGFMTL+ N
Sbjct: 68 FEETKLVRCIQGSLYDVIVDLRVDSPTFKKSFGAVLSAENRLMMYVPKGFAHGFMTLQPN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+E++Y V+ FYS E + GV W D + I WP+ + +SE+D+ P +
Sbjct: 128 SEIMYFVSQFYSKECERGVRWDDPTFSIEWPVKPS---LISERDKMHPNFD 175
>gi|315657310|ref|ZP_07910192.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315491782|gb|EFU81391.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 205
Score = 230 bits (588), Expect = 8e-59, Method: Composition-based stats.
Identities = 60/180 (33%), Positives = 89/180 (49%), Gaps = 6/180 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + ++F D RG F + Y E+ G VQ N S S G +RG+HF
Sbjct: 6 LKIAGAWEITPKQFPDERGAFMEMYKMGEFAEVVGHPLNLVQANCSIS-KAGVVRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V C G + D AVDIR SPT+G W S+ + + IY+ G H F+ L
Sbjct: 65 EVPPSQAKYVMCPRGAVLDFAVDIRVGSPTFGQWDSVLLEGEHRRAIYLSEGLGHCFVAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQI 175
E ++ V+Y ++ Y+ + GV+ D + + WP D + +SEKD P L +
Sbjct: 125 EDDSTVVYLCSEGYNPGREHGVSPVDPEVALKWPDHDLAGRPLEVILSEKDTAAPSLTEA 184
>gi|91215488|ref|ZP_01252459.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Psychroflexus torquis ATCC
700755]
gi|91186440|gb|EAS72812.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Psychroflexus torquis ATCC
700755]
Length = 182
Score = 230 bits (588), Expect = 8e-59, Method: Composition-based stats.
Identities = 78/172 (45%), Positives = 106/172 (61%), Gaps = 3/172 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+N I++ + FED RG F +T++SK K+ GL VFVQDN S S GTIRGLHFQ
Sbjct: 8 LNDCFIIEPKVFEDERGSFFETFNSKDFKKNTGLNIVFVQDNQSIS-HYGTIRGLHFQEG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQAKL+R G + D+ VD+R NS TY S +S N Q+++P GFAHGF +L
Sbjct: 67 EFAQAKLIRVAKGEVLDVVVDMRPNSSTYLKQFSYLLSGENNHQLFVPRGFAHGFTSLSN 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
YK +FY+ +SG+ + DK+++I W + VSEKDQNLP L+
Sbjct: 127 EVVFDYKCDNFYNKASESGIVFNDKALNIDWKIPKDDQ-IVSEKDQNLPSLD 177
>gi|260206836|ref|ZP_05774327.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis K85]
gi|289576201|ref|ZP_06456428.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis K85]
gi|289540632|gb|EFD45210.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis K85]
Length = 202
Score = 230 bits (587), Expect = 9e-59, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 2/178 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ + DSRG F + + + G Q N S S G +RGLHF
Sbjct: 6 LDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSS-AGVLRGLHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P +QAK V C++G +FD+ VDIR SPT+G W S+ + + IY+ G AHGF+ L
Sbjct: 65 QLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ N+ V+Y + Y+ + + + D ++ + WPL+D PS+S++D P + +
Sbjct: 125 QDNSTVMYLCSAEYNPQREHTICAADPTLAVDWPLVDGAAPSLSDRDAAAPSFEDVRA 182
>gi|254458121|ref|ZP_05071547.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacterales bacterium
GD 1]
gi|207084957|gb|EDZ62243.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacterales bacterium
GD 1]
Length = 187
Score = 230 bits (587), Expect = 9e-59, Method: Composition-based stats.
Identities = 78/186 (41%), Positives = 113/186 (60%), Gaps = 6/186 (3%)
Query: 1 MNIN-----PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M I V +L + F D RG+F ++YS E G+ F+QDNHS+S D T RG
Sbjct: 1 MKIEQTKLSGVLVLTPKIFNDERGFFYESYSKNSFLEHGVNHDFIQDNHSYSRDKYTFRG 60
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q P AQ L+R ++G I D AVD+R+NSPTYG + S+ +SA N Q+ IP GFAHG
Sbjct: 61 LHYQMNPKAQTTLIRVVSGEIMDFAVDLRKNSPTYGQYTSVLLSAENHKQLLIPKGFAHG 120
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F+TL N ++YK+ D Y+ E+D + +D +DI + D ++++KD+ P L I
Sbjct: 121 FLTLTDNVNILYKMDDIYAPEYDRILNVRDHQVDIKLGV-DFDKITIAKKDEKAPMLENI 179
Query: 176 DSPFEY 181
++ F Y
Sbjct: 180 ENNFIY 185
>gi|163757897|ref|ZP_02164986.1| strX protein [Hoeflea phototrophica DFL-43]
gi|162285399|gb|EDQ35681.1| strX protein [Hoeflea phototrophica DFL-43]
Length = 182
Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats.
Identities = 70/176 (39%), Positives = 107/176 (60%), Gaps = 3/176 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I + + D RG F++ + + GL + Q N S S GT+RGLHFQR
Sbjct: 6 LSIEGAFRIDPERIGDERGSFARMFCTSEFSAHGLATSWAQMNVSHSARVGTLRGLHFQR 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP A+AKLVRC+ G +FD+ VD+R SP +G W S+E++ +G +Y+P G AHGF TL
Sbjct: 66 PPAAEAKLVRCLKGAMFDVLVDLRSGSPGFGQWTSVELTPESGAMVYVPEGVAHGFQTLL 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+TEV+Y + Y EH+ G+ + D+S+ + WPL + ++SE+D+ P L +D
Sbjct: 126 PDTEVLYCHSVPYQREHEGGLRFDDESVGVAWPLP---VSTLSERDKAHPGLLALD 178
>gi|15610601|ref|NP_217982.1| dTDP-4-dehydrorhamnose 3,5-epimerase RmlC [Mycobacterium
tuberculosis H37Rv]
gi|15843060|ref|NP_338097.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
CDC1551]
gi|31794641|ref|NP_857134.1| dTDP-4-dehydrorhamnose 3,5-epimerase RmlC [Mycobacterium bovis
AF2122/97]
gi|121639385|ref|YP_979609.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|148663330|ref|YP_001284853.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
H37Ra]
gi|167966768|ref|ZP_02549045.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
H37Ra]
gi|215413379|ref|ZP_03422063.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
94_M4241A]
gi|215428972|ref|ZP_03426891.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
T92]
gi|215432435|ref|ZP_03430354.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
EAS054]
gi|219559533|ref|ZP_03538609.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
T17]
gi|224991881|ref|YP_002646570.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium bovis
BCG str. Tokyo 172]
gi|253800510|ref|YP_003033511.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis KZN 1435]
gi|254234056|ref|ZP_04927381.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis C]
gi|254366066|ref|ZP_04982111.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
str. Haarlem]
gi|254552569|ref|ZP_05143016.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
gi|260188520|ref|ZP_05765994.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis CPHL_A]
gi|260202648|ref|ZP_05770139.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis T46]
gi|289445065|ref|ZP_06434809.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
T46]
gi|289449169|ref|ZP_06438913.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis CPHL_A]
gi|289555735|ref|ZP_06444945.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis KZN 605]
gi|289571698|ref|ZP_06451925.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis T17]
gi|289752189|ref|ZP_06511567.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis T92]
gi|289755598|ref|ZP_06514976.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
EAS054]
gi|297636124|ref|ZP_06953904.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
KZN 4207]
gi|297733124|ref|ZP_06962242.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
KZN R506]
gi|298526949|ref|ZP_07014358.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis 94_M4241A]
gi|306777813|ref|ZP_07416150.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu001]
gi|306782531|ref|ZP_07420868.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu002]
gi|306786350|ref|ZP_07424672.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu003]
gi|306790719|ref|ZP_07429041.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu004]
gi|306795248|ref|ZP_07433550.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu005]
gi|306799437|ref|ZP_07437739.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu006]
gi|306805284|ref|ZP_07441952.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu008]
gi|306809469|ref|ZP_07446137.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu007]
gi|306969577|ref|ZP_07482238.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu009]
gi|306973931|ref|ZP_07486592.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu010]
gi|307081640|ref|ZP_07490810.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu011]
gi|307086246|ref|ZP_07495359.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu012]
gi|313660455|ref|ZP_07817335.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
KZN V2475]
gi|81668709|sp|O06330|RMLC_MYCTU RecName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; AltName:
Full=Thymidine diphospho-4-keto-rhamnose 3,5-epimerase;
AltName: Full=dTDP-4-keto-6-deoxyglucose 3,5-epimerase;
AltName: Full=dTDP-6-deoxy-D-xylo-4-hexulose
3,5-epimerase; AltName: Full=dTDP-L-rhamnose synthase
gi|40889319|pdb|1PM7|A Chain A, Rmlc (Dtdp-6-Deoxy-D-Xylo-4-Hexulose 3,5-Epimerase)
Structure From Mycobacterium Tuberculosis And Inhibitor
Design. The Apo Structure.
gi|40889320|pdb|1PM7|B Chain B, Rmlc (Dtdp-6-Deoxy-D-Xylo-4-Hexulose 3,5-Epimerase)
Structure From Mycobacterium Tuberculosis And Inhibitor
Design. The Apo Structure.
gi|118138539|pdb|2IXC|A Chain A, Rmlc M. Tuberculosis With Dtdp-Rhamnose
gi|118138540|pdb|2IXC|B Chain B, Rmlc M. Tuberculosis With Dtdp-Rhamnose
gi|118138541|pdb|2IXC|C Chain C, Rmlc M. Tuberculosis With Dtdp-Rhamnose
gi|118138542|pdb|2IXC|D Chain D, Rmlc M. Tuberculosis With Dtdp-Rhamnose
gi|2104388|emb|CAB08731.1| dTDP-4-DEHYDRORHAMNOSE 3,5-EPIMERASE RMLC
(dTDP-4-KETO-6-DEOXYGLUCOSE 3,5-EPIMERASE)
(dTDP-L-RHAMNOSE SYNTHETASE) (THYMIDINE
DIPHOSPHO-4-KETO-RHAMNOSE 3,5-EPIMERASE) [Mycobacterium
tuberculosis H37Rv]
gi|13883404|gb|AAK47911.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
CDC1551]
gi|31620238|emb|CAD95681.1| PROBABLE DTDP-4-DEHYDRORHAMNOSE 3,5-EPIMERASE RMLC
(DTDP-4-KETO-6-DEOXYGLUCOSE 3,5-EPIMERASE)
(DTDP-L-RHAMNOSE SYNTHETASE) (THYMIDINE
DIPHOSPHO-4-KETORHAMNOSE 3,5-EPIMERASE) [Mycobacterium
bovis AF2122/97]
gi|121495033|emb|CAL73519.1| Probable dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|124599585|gb|EAY58689.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis C]
gi|134151579|gb|EBA43624.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
str. Haarlem]
gi|148507482|gb|ABQ75291.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
H37Ra]
gi|224774996|dbj|BAH27802.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium bovis
BCG str. Tokyo 172]
gi|253322013|gb|ACT26616.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis KZN 1435]
gi|289417984|gb|EFD15224.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
T46]
gi|289422127|gb|EFD19328.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis CPHL_A]
gi|289440367|gb|EFD22860.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis KZN 605]
gi|289545452|gb|EFD49100.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis T17]
gi|289692776|gb|EFD60205.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis T92]
gi|289696185|gb|EFD63614.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
EAS054]
gi|298496743|gb|EFI32037.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis 94_M4241A]
gi|308213897|gb|EFO73296.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu001]
gi|308324848|gb|EFP13699.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu002]
gi|308329102|gb|EFP17953.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu003]
gi|308332910|gb|EFP21761.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu004]
gi|308336570|gb|EFP25421.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu005]
gi|308340445|gb|EFP29296.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu006]
gi|308344309|gb|EFP33160.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu007]
gi|308348200|gb|EFP37051.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu008]
gi|308352924|gb|EFP41775.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu009]
gi|308356767|gb|EFP45618.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu010]
gi|308360712|gb|EFP49563.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu011]
gi|308364327|gb|EFP53178.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis SUMu012]
gi|323717949|gb|EGB27138.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis CDC1551A]
gi|328460241|gb|AEB05664.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis KZN 4207]
Length = 202
Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 2/178 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ + DSRG F + + + G Q N S S G +RGLHF
Sbjct: 6 LDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSS-AGVLRGLHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P +QAK V C++G +FD+ VDIR SPT+G W S+ + + IY+ G AHGF+ L
Sbjct: 65 QLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ N+ V+Y + Y+ + + + D ++ + WPL+D PS+S++D P + +
Sbjct: 125 QDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDVRA 182
>gi|289672184|ref|ZP_06493074.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
syringae FF5]
Length = 149
Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats.
Identities = 66/145 (45%), Positives = 95/145 (65%), Gaps = 3/145 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V IL+ + F D RG+F +++++K + GL FVQDNHS S G +RGLH+Q
Sbjct: 7 KLPEVLILEPKVFGDERGFFYESFNAKAFQAATGLTREFVQDNHSRS-QRGVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQ KLVR G++ D+AVDIRR+SP +G WV +E+SA N Q+++P GFAHGF+ L
Sbjct: 66 EN-AQGKLVRVTVGKVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLS 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQD 145
+ E +YK TD+Y+ + +AW D
Sbjct: 125 EHAEFLYKTTDYYTPSAERCIAWDD 149
>gi|183981101|ref|YP_001849392.1| dTDP-4-dehydrorhamnose 3,5-epimerase, RmlC [Mycobacterium marinum
M]
gi|183174427|gb|ACC39537.1| dTDP-4-dehydrorhamnose 3,5-epimerase, RmlC [Mycobacterium marinum
M]
Length = 201
Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats.
Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 3/178 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + + DSRG F + + G + Q N S S G +RGLHF
Sbjct: 6 LKVPGAWEITPTIHGDSRGMFFEWLTDSGFTAFCGHRFDVRQANCSVSS-AGVLRGLHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V C++G +FD+ VDIR SPT+G W S+ + + IYI G AHGF+ L
Sbjct: 65 ELPPSQAKYVTCVSGAVFDVVVDIRLGSPTFGQWDSVLLD-DRHRSIYISEGLAHGFLAL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ + V+Y + Y+ + + + D + I WPL+D PS+SE+D L+++ +
Sbjct: 124 QDKSTVMYMCSAEYNPQREHTICATDPELAIDWPLVDGAPPSLSERDAAAGSLDEVRA 181
>gi|215405504|ref|ZP_03417685.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
02_1987]
gi|289747298|ref|ZP_06506676.1| dtdp-4-dehydrorhamnose 3,5-epimerase rmlc [Mycobacterium
tuberculosis 02_1987]
gi|289687826|gb|EFD55314.1| dtdp-4-dehydrorhamnose 3,5-epimerase rmlc [Mycobacterium
tuberculosis 02_1987]
Length = 202
Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats.
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 2/178 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ + DSRG F + + + G Q N S S G +RGLHF
Sbjct: 6 LDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSS-AGVLRGLHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P +QAK V C++G +FD+ VDIR SPT+G W S+ + + IY+ G AHGF+ L
Sbjct: 65 QLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ N+ V+Y + Y+ + + + D ++ + WPL++ PS+S++D P + +
Sbjct: 125 QDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVNGAAPSLSDRDAAAPSFEDVRA 182
>gi|189218516|ref|YP_001939157.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylacidiphilum infernorum
V4]
gi|189185374|gb|ACD82559.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylacidiphilum infernorum
V4]
Length = 181
Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats.
Identities = 67/170 (39%), Positives = 101/170 (59%), Gaps = 3/170 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + ++ K ED RG+F++ + + + GL Q N S S GT+RGLH+Q
Sbjct: 6 LPLAGAFLIDLEKKEDPRGFFARVFCRREYEAHGLDPDIAQINTSLSLKKGTLRGLHYQV 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P A+ K++RC+ G ++D+ VD+R S TY C E++ N +Y+P GFAHGF+TL
Sbjct: 66 FPKAETKVIRCLRGALWDVIVDLRPESKTYLCHYGCELNEENRRMVYVPRGFAHGFLTLA 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
NTE Y V +FYS EH+ G+ + D +++ITWP +SEKD+N P
Sbjct: 126 DNTEAYYLVGEFYSPEHERGIRYNDPALNITWPFEP---LVISEKDRNYP 172
>gi|325675109|ref|ZP_08154795.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus equi ATCC 33707]
gi|325554070|gb|EGD23746.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus equi ATCC 33707]
Length = 201
Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats.
Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 6/180 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + + R+F D RG F + + +G Q N S S G +RG+HF
Sbjct: 9 LKVPGAWEITPRQFGDHRGVFLEWFKDPGFSANVGRTLDLAQANCSVSA-AGVLRGIHFA 67
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G I D+ VD+R SPT+G W S+ + + ++I G HGF++L
Sbjct: 68 DVPPGQAKYVTCVRGAILDVVVDLRVGSPTFGQWDSVLLDDVDRRAVFISEGLGHGFLSL 127
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQI 175
E ++ VIY + Y+ + + V+ D I I WP++ ++ ++S+KD P L Q
Sbjct: 128 EDDSTVIYLCSTGYAPDREHEVSPLDPGIGIDWPVVGRDGSSLQWTLSDKDLAAPTLQQA 187
>gi|313673123|ref|YP_004051234.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Calditerrivibrio
nitroreducens DSM 19672]
gi|312939879|gb|ADR19071.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Calditerrivibrio
nitroreducens DSM 19672]
Length = 187
Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats.
Identities = 72/171 (42%), Positives = 106/171 (61%), Gaps = 3/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I ++I++T + D+RG F++ Y L E+ VQ NHS + GT+RGLHFQ PP
Sbjct: 12 IEGLKIVETASYIDTRGAFTRLYCECELAEIIGSRRIVQINHSCTQQVGTVRGLHFQYPP 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+A+ KLVRC+ GR++D+AVD+R NSPT+ W + E++ NG I IP GFAHGF LE
Sbjct: 72 HAEMKLVRCLRGRVWDVAVDLRANSPTFLHWHAEELTPENGRMIIIPEGFAHGFQVLEAA 131
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+E++Y T +Y+ ++G + D + I WPL + +S +D N P L
Sbjct: 132 SELLYLHTAYYAPSAEAGFRYDDPCLGIKWPLP---VSELSPRDANHPLLK 179
>gi|152993302|ref|YP_001359023.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfurovum sp. NBC37-1]
gi|151425163|dbj|BAF72666.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfurovum sp. NBC37-1]
Length = 191
Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats.
Identities = 82/182 (45%), Positives = 118/182 (64%), Gaps = 3/182 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
M I+ V +++ + +D RG+F +T+ L+ LG + F QDN S S G +RGLH+Q
Sbjct: 6 MEISDVIVIEPKIHKDERGYFIETFRVDKLESFLGYKIDFCQDNESKSSK-GVLRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
PP+AQ KLVR + GR+ DIAVDIR+ SPT+G V++E+S N Q+ +P GFAH F+ L
Sbjct: 65 LPPFAQTKLVRVVVGRVLDIAVDIRKGSPTFGKHVAVELSGENRKQLLVPRGFAHAFVVL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
E NT YKV +YS E+D G+++ DK + I+WPL L +S +D + P L++ D F
Sbjct: 125 EDNTIFAYKVDSYYSPEYDRGISYADKELAISWPLPSEEL-KLSTRDTSQPKLHETDEIF 183
Query: 180 EY 181
EY
Sbjct: 184 EY 185
>gi|148824675|ref|YP_001289429.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis F11]
gi|148723202|gb|ABR07827.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis F11]
Length = 202
Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats.
Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 2/178 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ + DSRG F + + + G Q N S S G +RGLHF
Sbjct: 6 LDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSS-AGVLRGLHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P +QAK V C++G +FD+ VDIR SPT+G W S+ + + IY+ G AHGF+ L
Sbjct: 65 QLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ N+ VIY + Y+ + + + D ++ + WPL+D PS+S++D P + +
Sbjct: 125 QDNSTVIYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDVRA 182
>gi|218660783|ref|ZP_03516713.1| dTDP-4-dehydrorhamnose 3,5-epimerase protein [Rhizobium etli
IE4771]
Length = 156
Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats.
Identities = 75/148 (50%), Positives = 99/148 (66%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + + +F D RG+FS+ + +E FVQDN S S GT+RGLHFQ PP
Sbjct: 8 IEGIVAITPPRFGDHRGYFSEVFKDAWFRENVADVTFVQDNESLSAQAGTVRGLHFQIPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVRC+AGRI D+ VDIR SP++G W+S E+S + G Q++IP GFAHGF T+E N
Sbjct: 68 FAQGKLVRCLAGRIMDVVVDIRVGSPSFGKWLSQELSPDTGKQLWIPPGFAHGFATIEPN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDI 150
+ + YKVT YS +HD G+AW D +I I
Sbjct: 128 SVISYKVTAPYSPQHDRGIAWNDPAIGI 155
>gi|153868867|ref|ZP_01998601.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Beggiatoa sp. PS]
gi|152074563|gb|EDN71405.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Beggiatoa sp. PS]
Length = 176
Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats.
Identities = 64/166 (38%), Positives = 97/166 (58%), Gaps = 3/166 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ D RG+F++T+ + + GL VQ N SF+ + GT+RG+H+Q P
Sbjct: 8 LPGAYLIEFEPITDERGFFARTWCQQEFEAHGLNPNLVQCNISFNKNKGTLRGMHYQVAP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y +AKLVRC G I+D+ +D+ S T+ W+++E++ANN +YIP FAHGF TL N
Sbjct: 68 YEEAKLVRCTKGAIYDVIIDLHPESSTFKQWLAVELTANNQKMLYIPERFAHGFQTLADN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
TEV Y+++ FY E G+ W D + I W T +S KD
Sbjct: 128 TEVFYQMSTFYHPECARGLRWNDPAFKIKW---ATDKQIISAKDSQ 170
>gi|218755244|ref|ZP_03534040.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis GM
1503]
gi|289763647|ref|ZP_06523025.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis GM
1503]
gi|289711153|gb|EFD75169.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis GM
1503]
Length = 205
Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 2/178 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ + DSRG F + + + G Q N S S G +RGLHF
Sbjct: 6 LDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSS-AGVLRGLHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P +QAK V C++G +FD+ VDIR SPT+G W S+ + + IY+ G AHGF+ L
Sbjct: 65 QLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ N+ V+Y + Y+ + + + D ++ + WPL+D PS+S++D P + +
Sbjct: 125 QDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDVRA 182
>gi|289642891|ref|ZP_06475026.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia symbiont of Datisca
glomerata]
gi|289507274|gb|EFD28238.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia symbiont of Datisca
glomerata]
Length = 216
Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 4/178 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + R+ D RG F + + S+ + + +G Q NHS S GT+RG+H+
Sbjct: 17 LEIAGAWVFTPRQHTDDRGTFLEWFRSETVVEAVGHPLHLAQANHSVS-RRGTLRGIHYA 75
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V C+ GR+ D VDIR SPTYG ++ + + +Y+ G H FM L
Sbjct: 76 AVPPSQAKYVTCVHGRVLDCVVDIRLGSPTYGTHQAVLLDDVDRKGLYLAEGLGHSFMAL 135
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
N + Y + YS + G+ D + + WP + P +SEKD P L + ++
Sbjct: 136 TDNAAISYICSTPYSPAREYGIDPLDPDLTLPWPR--DVAPLLSEKDARAPSLKEAEA 191
>gi|170290461|ref|YP_001737277.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174541|gb|ACB07594.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 180
Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats.
Identities = 72/179 (40%), Positives = 104/179 (58%), Gaps = 7/179 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I + ++ F DSRG+F++ Y G+ FVQ N S+S G +RGLH+Q
Sbjct: 9 LEIPDLLLIDHVLFPDSRGFFTELYKKSDFTGNGIPHDFVQVNLSYS-RKGVVRGLHYQL 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLV I+G++FD+AVDIRR S +G +VS+ + GL ++IP GFAHGF LE
Sbjct: 68 KPMEQGKLVYVISGKVFDVAVDIRRGSKWFGRYVSVLL--EPGLALWIPPGFAHGFQALE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
T +Y VT YS +H+ + W D+ I I WPL + + +SE+D P L ++ F
Sbjct: 126 D-TYFLYLVTKEYSPQHERCIKWDDQEIGIEWPLKEAV---LSERDSKCPPLKSCETNF 180
>gi|312137739|ref|YP_004005075.1| dtdp-4-dehydrorhamnose 3,5-epimerase rmlc [Rhodococcus equi 103S]
gi|311887078|emb|CBH46387.1| dTDP-4-dehydrorhamnose 3,5-epimerase RmlC [Rhodococcus equi 103S]
Length = 198
Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats.
Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 6/180 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + + R+F D RG F + + +G Q N S S G +RG+HF
Sbjct: 6 LKVPGAWEITPRQFGDHRGVFLEWFKDPGFSANVGRTLDLAQANCSVSA-AGVLRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G I D+ VD+R SPT+G W S+ + + ++I G HGF++L
Sbjct: 65 DVPPGQAKYVTCVRGAILDVVVDLRVGSPTFGQWDSVLLDDVDRRAVFISEGLGHGFLSL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQI 175
E ++ VIY + Y+ + + V+ D I I WP++ ++ ++S+KD P L Q
Sbjct: 125 EDDSTVIYLCSTGYAPDREHEVSPLDPGIGIDWPVVGRDGSSLQWTLSDKDLAAPTLQQA 184
>gi|308272531|emb|CBX29135.1| dTDP-4-dehydrorhamnose 3,5-epimerase [uncultured Desulfobacterium
sp.]
Length = 180
Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats.
Identities = 69/180 (38%), Positives = 106/180 (58%), Gaps = 10/180 (5%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
MNI V +++ F D+RG+F++ Y + +G++ FVQDN S S +RG
Sbjct: 1 MNIIPTYLKGVILIEPPVFSDNRGYFTEVYKKSVYDSIGIERNFVQDNLSCSSK-DVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LH+Q QAKLV+ I G IFD+AVD+R S T+G W S +S N +++IP FAHG
Sbjct: 60 LHYQVKQK-QAKLVQVIKGEIFDVAVDLRPYSKTFGKWESFILSDKNNRRVFIPEDFAHG 118
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F L ++YK ++ Y+ + G+ W D +++I WP+ + P VSEKD+ LP +++
Sbjct: 119 FCVLSDTAYLLYKCSEHYAPGDEGGIIWCDGTLNINWPVKN---PIVSEKDRKLPAFSEV 175
>gi|298346186|ref|YP_003718873.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus curtisii ATCC
43063]
gi|298236247|gb|ADI67379.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus curtisii ATCC
43063]
Length = 205
Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats.
Identities = 61/180 (33%), Positives = 89/180 (49%), Gaps = 6/180 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + ++F D RG F + Y E+ G VQ N S S G +RG+HF
Sbjct: 6 LKIAGAWEITPKQFPDERGAFMEMYKMGEFAEVVGHPLNLVQANCSIS-KAGVVRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V C G + D AVDIR SPT+G W S+ + + IY+ G H F+ L
Sbjct: 65 EVPPSQAKYVMCPRGAVLDFAVDIRVGSPTFGQWDSVLLEGEHRRAIYLSEGLGHCFVAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQI 175
E N+ V+Y ++ Y+ + GV+ D + + WP D + +SEKD P L +
Sbjct: 125 EDNSTVVYLCSEGYNPGREHGVSPVDPEVALKWPDHDLAGRPLEVILSEKDTAAPSLVEA 184
>gi|304390054|ref|ZP_07372008.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304326536|gb|EFL93780.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 205
Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats.
Identities = 60/180 (33%), Positives = 89/180 (49%), Gaps = 6/180 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + ++F D RG F + Y E+ G VQ N S S G +RG+HF
Sbjct: 6 LKIAGAWEITPKQFPDERGAFMEMYKMGEFAEVVGHPLNLVQANCSIS-KAGVVRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V C G + D AVDIR SPT+G W S+ + + IY+ G H F+ L
Sbjct: 65 EVPPSQAKYVMCPRGAVLDFAVDIRVGSPTFGQWDSVLLEGEHRRAIYLSEGLGHCFVAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQI 175
E ++ V+Y ++ Y+ + GV+ D + + WP D + +SEKD P L +
Sbjct: 125 EDDSTVVYLCSEGYNPGREHGVSPVDPEVALKWPDHDLAGRPLEVILSEKDTAAPSLVEA 184
>gi|227541663|ref|ZP_03971712.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227182631|gb|EEI63603.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 197
Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats.
Identities = 69/178 (38%), Positives = 102/178 (57%), Gaps = 6/178 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
N+ V + D RG F + + + +E G Q N S S G +RGLH+
Sbjct: 6 NLPGVLLSVPEIHPDDRGTFHEWFKATDFEEAVGFPFDLQQANVSTS-KSGVLRGLHYAD 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P QAK V CI+GRI+D+AVDIR+ S ++G ++ +E+SA N +Y+P GFAHGF+ LE
Sbjct: 65 VPPGQAKFVSCISGRIWDVAVDIRKGSASFGRYIGVELSAENRHSLYLPVGFAHGFVALE 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
+T V Y ++ Y+ H+ G+ D+ + I WP D I +S+KDQN P L ++ P
Sbjct: 125 DST-VAYLCSEGYNPSHEHGINAFDEELGIDWPSRDVI---LSDKDQNAPGLREVKLP 178
>gi|227487169|ref|ZP_03917485.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227092827|gb|EEI28139.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 197
Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats.
Identities = 69/178 (38%), Positives = 102/178 (57%), Gaps = 6/178 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
N+ V + D RG F + + + +E G Q N S S G +RGLH+
Sbjct: 6 NLPGVLLSVPEIHPDDRGTFHEWFKATDFEEAVGFPFDLQQANVSTS-KSGVLRGLHYAD 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P QAK V CI+GRI+D+AVDIR+ S ++G ++ +E+SA N +Y+P GFAHGF+ LE
Sbjct: 65 VPPGQAKFVSCISGRIWDVAVDIRKGSASFGRYIGVELSAENRHSLYLPVGFAHGFVALE 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
+T V Y ++ Y+ H+ G+ D+ + I WP D I +S+KDQN P L ++ P
Sbjct: 125 DST-VAYLCSEGYNPSHEHGINAFDEELGIDWPSRDVI---LSDKDQNAPGLREVKLP 178
>gi|118616616|ref|YP_904948.1| dTDP-4-dehydrorhamnose 3,5-epimerase, RmlC [Mycobacterium ulcerans
Agy99]
gi|118568726|gb|ABL03477.1| dTDP-4-dehydrorhamnose 3,5-epimerase, RmlC [Mycobacterium ulcerans
Agy99]
Length = 201
Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats.
Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 3/178 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + + DSRG F + + G + Q N S S G +RGLHF
Sbjct: 6 LKVPGAWEITPTIHGDSRGMFFEWLTDSGFTAFCGHRFDVRQANCSVSS-AGVLRGLHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +Q+K V C++G +FD+ VDIR SPT+G W S+ + + IYI G AHGF+ L
Sbjct: 65 ELPPSQSKYVTCVSGAVFDVVVDIRLGSPTFGQWDSVLLD-DRHRSIYISEGLAHGFLAL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ + V+Y + Y+ + + + D + I WPL+D PS+SE+D L+++ +
Sbjct: 124 QDKSTVMYMCSAEYNPQREHTICATDPELAIDWPLVDGAPPSLSERDAAAGSLDEVRA 181
>gi|215447804|ref|ZP_03434556.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
T85]
gi|289759628|ref|ZP_06519006.1| dtdp-4-dehydrorhamnose 3,5-epimerase rmlc [Mycobacterium
tuberculosis T85]
gi|294995761|ref|ZP_06801452.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
210]
gi|289715192|gb|EFD79204.1| dtdp-4-dehydrorhamnose 3,5-epimerase rmlc [Mycobacterium
tuberculosis T85]
gi|326905311|gb|EGE52244.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
tuberculosis W-148]
Length = 202
Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 2/178 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ + DSRG F + + + G Q N S S G +RGLHF
Sbjct: 6 LDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSS-AGVLRGLHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P +QAK V C++G +FD+ VDIR SPT+G W S+ + + IY+ G AHGF+ L
Sbjct: 65 QLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSDGLAHGFLAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ N+ V+Y + Y+ + + + D ++ + WPL+D PS+S++D P + +
Sbjct: 125 QDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDVRA 182
>gi|119513241|ref|ZP_01632285.1| dTDP-4-dehydrorhamnose 3,5-epimerase-like protein [Nodularia
spumigena CCY9414]
gi|119462108|gb|EAW43101.1| dTDP-4-dehydrorhamnose 3,5-epimerase-like protein [Nodularia
spumigena CCY9414]
Length = 185
Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats.
Identities = 63/171 (36%), Positives = 99/171 (57%), Gaps = 3/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ I+ K D RG+F++ + ++ GL+ Q N SF+ GT+RG+H+Q P
Sbjct: 8 LKDAFIVDVEKKPDHRGFFARGFCAQEFMAHGLKPTVAQCNISFNHKKGTVRGMHYQVSP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
A+ KLVRC G I+D+ +D+R SPT+ + +E++A N +Y+P FAHG+ TL +
Sbjct: 68 AAETKLVRCTKGAIYDVIIDMRPESPTFLSHIGVELTAENHRALYVPEMFAHGYQTLTDD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
EV+Y+V +FY+ ++ G+ + D I WPL T +SEKD N L
Sbjct: 128 AEVVYQVGEFYTPGYERGLRYNDPFFHIEWPLAVT---EISEKDLNWTLLE 175
>gi|16611773|gb|AAL27354.1|AF402315_9 dTDP-6-deoxy-D-glucose-3,5 epimerase [Shigella boydii]
Length = 177
Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats.
Identities = 67/174 (38%), Positives = 97/174 (55%), Gaps = 5/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+N I++ + D RG+F + Y + K + G FVQDN+S S +RGLHFQ
Sbjct: 8 LNDAFIIEPDVYGDERGFFQEVYHHEKYKNIIGENLTFVQDNYSRS-QKNVLRGLHFQTS 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G +FD+AVD+R+NS TYG W +E++ N Q +IP G AHGF+ L
Sbjct: 67 NP-QGKLVRVVRGSVFDVAVDLRKNSSTYGHWYGIELNEWNKKQFWIPPGMAHGFLVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ YK TDFY E + + W D I++ WP+ + P +S KD+ +
Sbjct: 126 IADFEYKCTDFYHPEFEKCLIWNDPIINVKWPINEE--PILSPKDRKGIRFEDL 177
>gi|226303737|ref|YP_002763695.1| dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase [Rhodococcus
erythropolis PR4]
gi|226182852|dbj|BAH30956.1| dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase [Rhodococcus
erythropolis PR4]
Length = 197
Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats.
Identities = 59/182 (32%), Positives = 88/182 (48%), Gaps = 6/182 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + ++F D RG F + + E+ G Q N S S G +RG+HF
Sbjct: 7 LKVPGAWEFTPKQFGDDRGVFLEWFREPGFSEITGRTLDLQQANCSVSA-AGVLRGIHFA 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G I DIAVD+R SPT+G W S+ + + I++ G H F++L
Sbjct: 66 DVPPGQAKYVTCVKGAILDIAVDLRVGSPTFGQWDSVLLDDVDRRAIFLSEGLGHAFLSL 125
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPFLNQI 175
E N+ V+Y + Y+ E + V D I I WP + + + ++S KD P L
Sbjct: 126 EDNSTVVYLCSTGYAPEREHEVHPLDPDIAIDWPTVGRSGEPLNITLSAKDTAAPSLQDA 185
Query: 176 DS 177
S
Sbjct: 186 VS 187
>gi|325268092|ref|ZP_08134738.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Kingella denitrificans ATCC
33394]
gi|324980477|gb|EGC16143.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Kingella denitrificans ATCC
33394]
Length = 182
Score = 227 bits (581), Expect = 4e-58, Method: Composition-based stats.
Identities = 70/173 (40%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V+ + F DSRG+F +T+ E + FVQ+NHS S G +RGLH+Q
Sbjct: 8 LPDVKRIDPHIFRDSRGFFMETFRHDWFCEHVAERAFVQENHSQSHQ-GVLRGLHYQTEN 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLVR AGR+FD+AVD+R++SPT+G W + +SA NG Q+++P GFAHGF L+
Sbjct: 67 -AQGKLVRVTAGRVFDVAVDMRQDSPTFGQWAAEILSAENGRQLWLPEGFAHGFYVLDGP 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
++Y+ TD+++ + + W D + ITWPL P +S KD Q+
Sbjct: 126 ATLLYRCTDYHNPSAEQTLRWDDPHVGITWPLQGA--PLLSPKDAQGQDWAQV 176
>gi|309789521|ref|ZP_07684104.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oscillochloris trichoides
DG6]
gi|308228487|gb|EFO82132.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oscillochloris trichoides
DG6]
Length = 176
Score = 227 bits (581), Expect = 5e-58, Method: Composition-based stats.
Identities = 69/172 (40%), Positives = 105/172 (61%), Gaps = 3/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ I+ ++FED+RG+F+ T+ + GL VQ N S++ GT+RG+HFQ
Sbjct: 7 ELSGAYIIDLQRFEDNRGFFACTWEANEFAAQGLSTNVVQANLSYNRTKGTLRGMHFQHA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYA+ KL+RC+ G I D+ +D+R +S +Y W+S+E+SA+N +YIP GFAHGF TL
Sbjct: 67 PYAEVKLIRCVRGAIVDVIIDLRPDSESYKRWISVELSADNRRALYIPEGFAHGFQTLVD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ EV+Y+V+ FY+ GV + D + ITWPL + +S KD
Sbjct: 127 DVEVMYQVSQFYTPSAADGVRYDDPAFGITWPLP---VSEISPKDAAWAAFA 175
>gi|209967017|ref|YP_002299932.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Rhodospirillum
centenum SW]
gi|209960483|gb|ACJ01120.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Rhodospirillum
centenum SW]
Length = 177
Score = 227 bits (581), Expect = 5e-58, Method: Composition-based stats.
Identities = 70/171 (40%), Positives = 96/171 (56%), Gaps = 3/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V ++ D RG F++ + + GL F Q + SF+ GT+RGLHFQ PP
Sbjct: 8 IPGVTVVDLEPIRDRRGHFARCFCADAFAARGLPTDFPQHSLSFNAVAGTVRGLHFQLPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ + KL+RC G IFD+AVD+R SPT+ WV +E+SA+ G +YIP G AHGF TL
Sbjct: 68 HGEPKLIRCTRGAIFDVAVDLRPESPTWRQWVGIELSASTGRALYIPPGLAHGFQTLTDE 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
TEV+Y + + E G W D + I WPL T +SE+D + P
Sbjct: 128 TEVLYMMGVRFVPEAARGYRWNDPAFGIDWPLPPT---LISERDLSFPDFA 175
>gi|310644323|ref|YP_003949082.1| dtdp-4-dehydrorhamnose 3,5-epimerase like protein [Paenibacillus
polymyxa SC2]
gi|309249274|gb|ADO58841.1| dTDP-4-dehydrorhamnose 3,5-epimerase like protein [Paenibacillus
polymyxa SC2]
Length = 177
Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats.
Identities = 73/167 (43%), Positives = 102/167 (61%), Gaps = 2/167 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V ++ D RG F++ + K GL+ FVQ N S++ GT+RGLH+Q PP
Sbjct: 8 LSGVYLIGLELLTDVRGHFARAWCQDEFKSHGLECSFVQCNISYNEKKGTLRGLHYQAPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y + K+VRC G I+D+ VD+R +SPTY W+S+E+S N +YIP GFAHG+ TL N
Sbjct: 68 YEEVKIVRCTKGSIYDVIVDLRPDSPTYKQWLSIELSDKNYKMLYIPKGFAHGYQTLSDN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
TEV Y+V+ Y E+ GV W D +I WP + +SEKDQN
Sbjct: 128 TEVFYQVSQMYKAEYARGVKWDDPEFNIEWP--EEEKRIMSEKDQNC 172
>gi|146278214|ref|YP_001168373.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides ATCC
17025]
gi|145556455|gb|ABP71068.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides ATCC
17025]
Length = 177
Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats.
Identities = 65/168 (38%), Positives = 99/168 (58%), Gaps = 3/168 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ ED RGWF +T+ + + + GL FVQ N S++ GT+RG+H+QR P
Sbjct: 8 LKDAVLIEAEPREDHRGWFERTFCEEEMAKAGLATRFVQHNSSYNHAVGTLRGMHYQRSP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+A+ K++ C GRI D+ +D+R +SPTY W ++ A + Q+YIP GFAHG++TLE
Sbjct: 68 HAEVKVITCTRGRIHDVIIDLRPDSPTYMKWEGFDLRAGDHRQLYIPEGFAHGYLTLEDA 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
T V Y V+ Y+ + GV W D + I W + +SEKD P
Sbjct: 128 TAVSYLVSTAYTPGAEGGVRWDDPTFGIAW---AGGVSVISEKDAAWP 172
>gi|91793899|ref|YP_563550.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella denitrificans
OS217]
gi|91715901|gb|ABE55827.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella denitrificans
OS217]
Length = 191
Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats.
Identities = 73/183 (39%), Positives = 95/183 (51%), Gaps = 10/183 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-----DVFVQDNHSFSFDCGTIRGLH 57
I V + K D RG+F +T+ K + VQDN S S +RGLH
Sbjct: 8 IPEVLLFKPTLHGDERGFFMETFRQKEFDACLMANGMAATPLVQDNVSRS-HRHVLRGLH 66
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
FQ + Q KLVR G IFD+AVDIR S T+G WV +SA N LQ++IPTGFAHGF
Sbjct: 67 FQ-EHHPQGKLVRVSQGEIFDVAVDIRPQSATFGHWVGHILSAENRLQMWIPTGFAHGFY 125
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
L +++YK +D+Y + + W D + I WPL P +S KD N F Q +
Sbjct: 126 VLSDIADIVYKCSDYYQSHDERVIPWNDPQLAIDWPLE--AEPILSIKD-NPQFFCQASN 182
Query: 178 PFE 180
P
Sbjct: 183 PLV 185
>gi|330834783|ref|YP_004409511.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Metallosphaera cuprina Ar-4]
gi|329566922|gb|AEB95027.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Metallosphaera cuprina Ar-4]
Length = 185
Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats.
Identities = 84/182 (46%), Positives = 113/182 (62%), Gaps = 8/182 (4%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M I V ++ +++F DSRG+F + Y K F Q NHSFS G +RGLHFQ
Sbjct: 8 MEIPEVVLIISKQFSDSRGYFEELYKESDFKNYV-PCNFPQINHSFS-KKGVLRGLHFQL 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PYAQ KLV I G+IFD+ VD+R SPTY WVS+E++ G ++IP GF HGF LE
Sbjct: 66 NPYAQGKLVTVIFGKIFDVGVDLRVGSPTYKKWVSVELTP--GKLLWIPAGFTHGFYALE 123
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ VIY VT +S +HDSG+ W D I++ WP D P +S+KD+NLP L + + F+
Sbjct: 124 E-SHVIYMVTKEFSKDHDSGIIWNDDEINVKWPAND---PMLSDKDRNLPRLRESKANFK 179
Query: 181 YD 182
Y+
Sbjct: 180 YN 181
>gi|85707416|ref|ZP_01038497.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseovarius sp. 217]
gi|85668072|gb|EAQ22952.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseovarius sp. 217]
Length = 155
Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats.
Identities = 82/155 (52%), Positives = 103/155 (66%), Gaps = 1/155 (0%)
Query: 30 LKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPT 89
+ E GL FVQDNHS S GTIRGLHFQ PP+AQAKLVRC G ++D+AVDIRR SPT
Sbjct: 1 MAEAGLTIDFVQDNHSLSEKVGTIRGLHFQSPPHAQAKLVRCGRGALYDVAVDIRRGSPT 60
Query: 90 YGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSID 149
YG WV +++S NG Q+ +P GF HGF+T E TE+IYK +D+Y+ E D V + D I
Sbjct: 61 YGHWVGVDLSFENGRQLLVPEGFLHGFVTREPMTEIIYKCSDYYAPECDGAVRFDDPEIG 120
Query: 150 ITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGL 184
ITW + + +S+KD P L SPFE+ G
Sbjct: 121 ITWGVEGESV-VLSDKDAKAPLLRDFVSPFEFVGA 154
>gi|24374673|ref|NP_718716.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella oneidensis MR-1]
gi|24349315|gb|AAN56160.1|AE015753_6 dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella oneidensis MR-1]
Length = 179
Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats.
Identities = 71/173 (41%), Positives = 97/173 (56%), Gaps = 8/173 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGL 56
+ V I + + F D RG+F +T+ E L F VQDN+S S +RGL
Sbjct: 7 ELAEVLIFEPKVFGDERGFFMETFRQAYFTECLLSRGFEAPALVQDNYSRS-QQHVLRGL 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H+Q + Q KLVR AG IFD+AVDIR S TYG WV +SA+N LQ++IP GFAHGF
Sbjct: 66 HYQLR-HPQGKLVRVCAGSIFDVAVDIRPQSATYGKWVGRILSADNHLQMWIPPGFAHGF 124
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
L +V+Y+ +D+Y+ + + W I WPLL+ P +S +D N
Sbjct: 125 YVLSEYADVLYRCSDYYAPNDEYVLPWNSVQFAIDWPLLNE-TPILSARDANA 176
>gi|167461276|ref|ZP_02326365.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus larvae subsp.
larvae BRL-230010]
Length = 179
Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats.
Identities = 67/173 (38%), Positives = 106/173 (61%), Gaps = 3/173 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ ++ K ED RG+F++T+ + + GL F+Q N S++ GTIRG+H+Q PP
Sbjct: 8 LEGAYLIGLEKHEDERGFFTRTFCANEFEARGLMPQFIQCNLSYNRKRGTIRGMHYQHPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y +AKLV+CI G ++D+ +D+R S TY ++ ++ N+G +YIP GFAHGF TL+
Sbjct: 68 YGEAKLVQCIRGELYDVIIDLRPLSKTYRQTFAVHLAGNSGTMLYIPEGFAHGFQTLQDE 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
TEV+Y ++ Y E +G+ W D S I WPL + +SE+D++ P +
Sbjct: 128 TEVLYYMSSPYKPEAAAGIRWNDPSFSIVWPLD---VKIISERDRHYPDYREF 177
>gi|117919840|ref|YP_869032.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sp. ANA-3]
gi|117612172|gb|ABK47626.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sp. ANA-3]
Length = 178
Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 99/173 (57%), Gaps = 8/173 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE----LGLQD-VFVQDNHSFSFDCGTIRGL 56
+ V + + + F D RG+F +T+ E GL+ VQDN S S +RGL
Sbjct: 7 ELAEVLVFEPQVFGDERGFFMETFRQSFFSECLKSRGLKVQELVQDNFSRS-QQHVLRGL 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H+QR + Q KLVR AG IFD+AVDIR S TYG WV +SA+N LQ++IP FAHGF
Sbjct: 66 HYQRE-HPQGKLVRVCAGSIFDVAVDIRPQSKTYGKWVGRVLSADNHLQMWIPPSFAHGF 124
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
L +V+Y+ TD+Y+ + + +AW I WPLL+ P +SE+D
Sbjct: 125 YVLSEYADVLYRCTDYYAPDDEYVLAWNSAEFAIDWPLLNE-TPILSERDAAA 176
>gi|320102995|ref|YP_004178586.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Isosphaera pallida ATCC
43644]
gi|319750277|gb|ADV62037.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Isosphaera pallida ATCC
43644]
Length = 199
Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats.
Identities = 77/198 (38%), Positives = 107/198 (54%), Gaps = 8/198 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V + R F D RG F + ++ + + GL FVQDN S+S G +RGLHFQ P
Sbjct: 8 LPEVLRITPRVFYDDRGRFQELWNHERYAQAGLPVCFVQDNLSWS-RPGVLRGLHFQN-P 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQ KLV ++G IFD+AVD+R SPTYG WV +S+ N LQ++IP GFAHGF L
Sbjct: 66 AAQGKLVMVLSGAIFDVAVDVRIGSPTYGQWVGEHLSSENSLQLFIPQGFAHGFAVLGDQ 125
Query: 123 -TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID-SPFE 180
V YK T Y + + + W D + I WP + + P ++ KD+ L Q++ SP
Sbjct: 126 PALVAYKCTHPYRPDCERALVWNDADLAIAWP-DEVVEPILNPKDRAASTLRQLERSP-- 182
Query: 181 YDGLPLLSLNMERDLLCV 198
LP + R +
Sbjct: 183 -GALPQYDASPVRQVRSA 199
>gi|87307565|ref|ZP_01089709.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Blastopirellula marina DSM
3645]
gi|87289735|gb|EAQ81625.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Blastopirellula marina DSM
3645]
Length = 176
Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats.
Identities = 63/169 (37%), Positives = 96/169 (56%), Gaps = 8/169 (4%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+++ R F+D RG F +T+ ++ + G+ FVQDN S S +RGLH+Q QA
Sbjct: 2 LIEPRVFQDERGEFFETFQAERYR--GITSVDFVQDNFSHS-KQSVLRGLHYQIE-CPQA 57
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLV + G IFD+AVDIR+ SP +G WV + +S+ Q+++P GFAHGF + + +VI
Sbjct: 58 KLVSVLQGEIFDVAVDIRKGSPNFGKWVGVSLSSECRKQLFVPIGFAHGFCVISESADVI 117
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK +D Y + + W D + + WP+ P +S KD L +
Sbjct: 118 YKCSDVYHPPGERTIQWNDPELAVEWPIK---TPLLSPKDAVALSLAEA 163
>gi|15828066|ref|NP_302329.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium leprae TN]
gi|221230543|ref|YP_002503959.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium leprae Br4923]
gi|4539119|emb|CAB39840.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium
leprae]
gi|13093620|emb|CAC30920.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium leprae]
gi|219933650|emb|CAR72062.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium leprae Br4923]
Length = 202
Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats.
Identities = 60/178 (33%), Positives = 96/178 (53%), Gaps = 2/178 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I+ + DSRG F + ++ G + Q N S S G +RGLHF
Sbjct: 6 LDISGAWEITPTIHSDSRGMFFEWLTASRFSAFTGHRLDVRQANCSVSS-AGVLRGLHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P +QAK V C+ G +FD+ VDIR SPT+GCW S+ ++ +N IYI AHGF+ L
Sbjct: 65 QVPPSQAKYVTCVTGSVFDVVVDIRLGSPTFGCWTSITLNDSNRKTIYISESLAHGFLAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ N+ V+Y + Y+ + + D + I WP++D + +S++D P L+ I +
Sbjct: 125 QDNSTVMYLCSAEYNPAREHAICATDPDLAIDWPVVDGVDTHLSKRDATAPNLDDIRA 182
>gi|152964540|ref|YP_001360324.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Kineococcus radiotolerans
SRS30216]
gi|151359057|gb|ABS02060.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Kineococcus radiotolerans
SRS30216]
Length = 181
Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats.
Identities = 63/172 (36%), Positives = 97/172 (56%), Gaps = 3/172 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ + D RG+F++++ + E GL Q N SF+ GT+RG+H Q P
Sbjct: 8 IEGVAIIELEERADDRGFFARSFCREEFLEAGLNPAVEQCNLSFNHKAGTLRGMHTQVDP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AKLVRC AG I DI VD+R +SPT V++E++A N +Y+P FAHG++TL
Sbjct: 68 APEAKLVRCTAGAIQDIIVDLRPDSPTRFQHVAVELTAANRRALYVPEYFAHGYLTLTDG 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
EV Y+V+ Y+ + G+ W D + + W + +S+KD + L
Sbjct: 128 AEVTYQVSQSYTPGTERGLRWDDPDLALPW---ARDVAVISDKDASWTLLAD 176
>gi|86742619|ref|YP_483019.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. CcI3]
gi|86569481|gb|ABD13290.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. CcI3]
Length = 209
Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats.
Identities = 64/194 (32%), Positives = 105/194 (54%), Gaps = 4/194 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I+ F D+RG F++T+ + GL Q + +++ GT+RG+H+ P
Sbjct: 8 IAGVMIVDVEPFPDARGMFARTFCADEFAAAGLTVDVAQCSVAYNASAGTVRGMHWAGEP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ KLVRC G + D+ VD R +SPTY V++E+SA+N ++I G AHG+ TL +
Sbjct: 68 VRETKLVRCTRGALLDVVVDPRPDSPTYLRHVAVELSADNHRALFIDAGLAHGYQTLVDS 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN-QIDSPFEY 181
TE Y++ ++ HD G+ + D + I WPL ++ +S+KD+ P L +
Sbjct: 128 TEATYQMNVPFTPGHDRGLRFDDPRLGIVWPLPVSV---ISDKDRAWPLLAGDGPAGPSG 184
Query: 182 DGLPLLSLNMERDL 195
D P ++RD+
Sbjct: 185 DAAPPGPPGIQRDV 198
>gi|119720615|ref|YP_921110.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermofilum pendens Hrk 5]
gi|119525735|gb|ABL79107.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermofilum pendens Hrk 5]
Length = 190
Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats.
Identities = 69/181 (38%), Positives = 102/181 (56%), Gaps = 6/181 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +++ F D RG+F++ Y G+ FVQ N SFS G +R LH+Q
Sbjct: 14 LEIPDVVLVEYAVFPDERGFFAELYKRTEFLSGGVPYGFVQVNLSFS-RAGVVRALHYQL 72
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q KLV ++GR+FD+AVDIRR SP +G VS+ + G +++P GFAHGF LE
Sbjct: 73 KPMEQGKLVYVVSGRVFDVAVDIRRGSPWFGRHVSVVL--EPGFALWVPPGFAHGFQALE 130
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ +Y VT YS +H+ + W+D + I WP ++ VS +D P + ++ FE
Sbjct: 131 D-SFFLYFVTKEYSPQHERCIFWRDPDLGIRWPRVEGA--VVSGRDSRCPLFREAETNFE 187
Query: 181 Y 181
Y
Sbjct: 188 Y 188
>gi|126175069|ref|YP_001051218.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS155]
gi|125998274|gb|ABN62349.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS155]
Length = 179
Score = 226 bits (578), Expect = 9e-58, Method: Composition-based stats.
Identities = 75/170 (44%), Positives = 97/170 (57%), Gaps = 9/170 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL----KELGLQ-DVFVQDNHSFSFDCGTIRGL 56
+ V + + + F D RG+F +T+ + G + VFVQ+NHS S +RGL
Sbjct: 7 ELAEVLVFEPQVFGDERGFFMETFRQSYFDACFAQRGFESCVFVQENHSRS-QRNVLRGL 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
HFQR Q KLVR AG IFD+AVDIR +S TYG WV +SA N LQ++IP GFAHGF
Sbjct: 66 HFQRR-KPQGKLVRVCAGSIFDVAVDIRPDSATYGKWVGRVLSAENHLQMWIPPGFAHGF 124
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
L EVIY+ T +Y E + VAW I WPL+ P +S +D
Sbjct: 125 YVLSDYAEVIYQCTQYYDPEDEGVVAWNSAEFAIDWPLI--AAPILSARD 172
>gi|38493079|pdb|1UPI|A Chain A, Mycobacterium Tuberculosis Rmlc Epimerase (Rv3465)
Length = 225
Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 2/178 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ + DSRG F + + + G Q N S S G +RGLHF
Sbjct: 26 LDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSS-AGVLRGLHFA 84
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P +QAK V C++G +FD+ VDIR SPT+G W S+ + + IY+ G AHGF+ L
Sbjct: 85 QLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLAL 144
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ N+ V+Y + Y+ + + + D ++ + WPL+D PS+S++D P + +
Sbjct: 145 QDNSTVMYLXSAEYNPQREHTIXATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDVRA 202
>gi|324519856|gb|ADY47498.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Ascaris suum]
Length = 304
Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats.
Identities = 69/176 (39%), Positives = 102/176 (57%), Gaps = 6/176 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I +++++ + F D RG+FS++Y+ + K+LG +VF QDNHSFS G +RGLH Q
Sbjct: 130 DIPDLKLIRPKVFPDERGFFSESYNIVEWSKQLGFSEVFKQDNHSFS-KFGVLRGLHCQ- 187
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
KLV I+G I+D+AVDIR S TYG W + + +IP GF HGF TL
Sbjct: 188 --PGMGKLVSVISGMIYDVAVDIRPGSATYGKWHGVILDGKTNTNFWIPDGFLHGFYTLS 245
Query: 121 MN-TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
V+YK TD Y+ + GV D+ I + WP+ + + +SE+D++ L I
Sbjct: 246 PEGAHVVYKCTDVYNPTTEFGVNPFDEEISVKWPIANKDIVIMSERDKSHQNLKDI 301
>gi|77463589|ref|YP_353093.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides
2.4.1]
gi|126462421|ref|YP_001043535.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides ATCC
17029]
gi|332558445|ref|ZP_08412767.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides WS8N]
gi|77388007|gb|ABA79192.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides
2.4.1]
gi|126104085|gb|ABN76763.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides ATCC
17029]
gi|332276157|gb|EGJ21472.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides WS8N]
Length = 177
Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats.
Identities = 64/171 (37%), Positives = 99/171 (57%), Gaps = 3/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ ED RGWF +T+ + + GL+ FVQ N S++ GT+RG+H+QR P
Sbjct: 8 LKDAVLIEAEPREDHRGWFERTFCMEEMAGAGLKTGFVQHNSSYNHAAGTLRGMHYQRAP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+++ K++ C GRI D+ +D+R +SPTY W ++ A + Q+YIP GFAHG++TLE
Sbjct: 68 HSEVKVITCTRGRIQDVIIDLRPDSPTYLKWEGFDLKAGDHRQLYIPEGFAHGYLTLEDA 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
T V Y V+ Y+ + GV W D + I W + +SEKD P
Sbjct: 128 TAVSYLVSAAYTPGAEGGVRWDDPAFGIDW---AAEVSVISEKDAAWPDFQ 175
>gi|113969681|ref|YP_733474.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sp. MR-4]
gi|113884365|gb|ABI38417.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sp. MR-4]
Length = 180
Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 99/173 (57%), Gaps = 8/173 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE----LGLQ-DVFVQDNHSFSFDCGTIRGL 56
+ V + + + F D RG+F +T+ E GL+ VQDN+S S +RGL
Sbjct: 7 ELAEVLVFEPQVFGDERGFFMETFRQSYFTECFQSRGLKAPELVQDNYSRS-QQHVLRGL 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H+Q + Q KLVR AG IFD+AVDIR S TYG WV +SA+N LQ++IP GFAHGF
Sbjct: 66 HYQCK-HPQGKLVRVCAGSIFDVAVDIRPQSETYGKWVGRVLSADNHLQMWIPPGFAHGF 124
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
L +VIY+ TD+Y+ + + +AW I WPL + P +SE+D
Sbjct: 125 YVLSEYADVIYRCTDYYAPDDEYVLAWNSAEFAIDWPLRNE-PPILSERDAKA 176
>gi|16329495|ref|NP_440223.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Synechocystis sp. PCC 6803]
gi|1651977|dbj|BAA16903.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Synechocystis sp. PCC 6803]
Length = 189
Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats.
Identities = 63/173 (36%), Positives = 103/173 (59%), Gaps = 3/173 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I +R + + D RG+ ++ + ++ LKE+G Q NH+ + GT+RG+H+Q
Sbjct: 12 LGIAGLRTVIRQPIGDRRGFLARLFCAEELKEVGWHKPIAQINHTHTAQGGTVRGMHYQN 71
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP A+ KLV CI G+++D+AVD+R +SPT+ W + +SA+N + IP G AHGF L
Sbjct: 72 PPSAEMKLVTCIRGQVWDVAVDLRVDSPTFLTWQGVVLSADNNRALLIPEGCAHGFQALS 131
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ E+IY + Y+ + G+ QD + I WP + +S++DQN P L+
Sbjct: 132 DDVELIYCHSVAYNPMAEGGLNPQDPRLGIEWP---QAITELSQRDQNHPLLD 181
>gi|116071140|ref|ZP_01468409.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein [Synechococcus
sp. BL107]
gi|116066545|gb|EAU72302.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein [Synechococcus
sp. BL107]
Length = 196
Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats.
Identities = 73/172 (42%), Positives = 100/172 (58%), Gaps = 4/172 (2%)
Query: 4 NPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ + F D+RGWF +++S + +G VF QDNHS S G +RGLH+Q P
Sbjct: 15 EGPLLMTPKCFGDNRGWFYESWSRRSFDNAVGETVVFSQDNHSRSIQ-GVLRGLHYQLAP 73
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
QAK+VR G IFD+AVDIR +SPT G W+ E+SA N Q++IP GFAHGF+TL
Sbjct: 74 EPQAKVVRATLGAIFDVAVDIRSSSPTCGAWIGAELSAENKAQLWIPEGFAHGFLTLSAV 133
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFL 172
EV YK F++ + + W D ++ I WP L+ S+S KD P
Sbjct: 134 AEVQYKARGFWNKACERALRWDDPTLAIDWPQGELNGNTISLSPKDAEAPDF 185
>gi|48590|emb|CAA79352.1| WbbV [Yersinia enterocolitica]
gi|318605010|emb|CBY26508.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Yersinia enterocolitica
subsp. palearctica Y11]
Length = 187
Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats.
Identities = 70/182 (38%), Positives = 102/182 (56%), Gaps = 8/182 (4%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I V + + R FED RG F ++++ +E +G Q FVQ N S+S IRGLH+Q
Sbjct: 6 LSIPEVILFEPRIFEDDRGHFFESFNLAKFQESIGRQVTFVQSNESYS-KQNVIRGLHYQ 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q KLVR + G +FDIAVD+R++SPT+G WV + +S N Q++IP GF HGF L
Sbjct: 65 VI-RPQGKLVRVVEGEVFDIAVDLRKSSPTFGQWVGVLLSDKNNHQLWIPEGFGHGFQVL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP-----LLDTILPSVSEKDQNLPFLNQ 174
+ + Y VTD++ EHD + + D I+I W I +S KD + L
Sbjct: 124 SPSAKFQYMVTDYWYPEHDRCIRFNDSDINIKWKEGIISEQQVIEYKLSSKDISGNSLAD 183
Query: 175 ID 176
+
Sbjct: 184 AE 185
>gi|188588831|ref|YP_001922579.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum E3 str.
Alaska E43]
gi|188499112|gb|ACD52248.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum E3 str.
Alaska E43]
Length = 195
Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats.
Identities = 60/175 (34%), Positives = 96/175 (54%), Gaps = 2/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V I++ F+D + + ++ Y+ K + G+ +FVQ+ F G ++G+HFQ+
Sbjct: 8 KMDGVYIIEPGVFKDEKEYCTEMYNKKQFLKAGINMIFVQE-FEFESKKGMLKGIHFQKQ 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q L++ G F +AVD+R S T+G W S ++ N Q+YIP GFAHGF+T+
Sbjct: 67 NN-QGSLIKVTKGEGFIVAVDLRYGSTTFGKWESFILNEENKKQVYIPEGFAHGFLTISD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
YK T+FY E + G+ W D I+I WPL +SEKD+ P ++
Sbjct: 126 EATFNYKCTEFYDPEDNRGIMWNDPDINIKWPLEKIENVILSEKDKLYPRFKDLN 180
>gi|86137091|ref|ZP_01055669.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseobacter sp. MED193]
gi|85826415|gb|EAQ46612.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseobacter sp. MED193]
Length = 182
Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats.
Identities = 64/176 (36%), Positives = 100/176 (56%), Gaps = 3/176 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I + K D+RG F++ + ++ E GL + Q N S S GT+RGLHFQR
Sbjct: 6 LPIAGAYHIVPEKLGDNRGAFARLFCNERFAEQGLNIEWAQMNLSRSAQKGTLRGLHFQR 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+++ KLVR + G++FD+ VD+R S TYG + + ++ +YIP G AHGF TL
Sbjct: 66 PPFSEVKLVRAVTGKVFDVLVDLREGSKTYGAHCGVILDSDQLEALYIPQGCAHGFQTLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ E+ Y + Y+ +H+ G+ + D ++ I WPL T S +D+ LP + I
Sbjct: 126 DDVELHYMHSAPYAPDHEGGIRFDDPTLSIRWPLGVTET---SPRDRALPLFSDIK 178
>gi|126726120|ref|ZP_01741962.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacterales bacterium
HTCC2150]
gi|126705324|gb|EBA04415.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacterales bacterium
HTCC2150]
Length = 155
Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats.
Identities = 83/156 (53%), Positives = 101/156 (64%), Gaps = 1/156 (0%)
Query: 30 LKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPT 89
+ + FVQDNHS S D GT+RGLHFQ PP+AQAKLVRC GR+FD+AVDIR+ SPT
Sbjct: 1 MAAASVTLDFVQDNHSMSADIGTVRGLHFQSPPHAQAKLVRCGRGRLFDVAVDIRKGSPT 60
Query: 90 YGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSID 149
YG WV E+S NG Q+ +P GF HGF T E +TE+ YK TD+Y+ E D V + I
Sbjct: 61 YGQWVGAELSFENGAQLLVPAGFLHGFSTREPDTEICYKCTDYYAPECDGAVRFDCPDIG 120
Query: 150 ITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLP 185
I W L D I +S KD P L DSPF ++G P
Sbjct: 121 IDWGLGD-IEAKLSGKDAAAPVLADFDSPFVWEGTP 155
>gi|297569786|ref|YP_003691130.1| glucose-1-phosphate thymidylyltransferase [Desulfurivibrio
alkaliphilus AHT2]
gi|296925701|gb|ADH86511.1| glucose-1-phosphate thymidylyltransferase [Desulfurivibrio
alkaliphilus AHT2]
Length = 401
Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 74/152 (48%), Positives = 96/152 (63%), Gaps = 4/152 (2%)
Query: 26 SSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIR 84
+ K+ + GL+ FVQDNHS S G +RGLH+Q PP AQ KLVR + G +FD+AVDIR
Sbjct: 251 NEKIFQAATGLRPNFVQDNHSKS-QKGVLRGLHYQLPPKAQGKLVRVVQGEVFDVAVDIR 309
Query: 85 RNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQ 144
NSPT+G WV +SA+N Q++IP GFAHG +TL E +YK TDFY+ EH+ +AW
Sbjct: 310 HNSPTFGRWVGQRLSADNKRQLWIPEGFAHGVLTLTPTAEFLYKTTDFYAPEHERCIAWN 369
Query: 145 DKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
D I I W D P +S KD+ L +
Sbjct: 370 DPDIGIDWGYEDP--PLLSTKDRECVPLCNAE 399
>gi|221639431|ref|YP_002525693.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides
KD131]
gi|221160212|gb|ACM01192.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacter sphaeroides
KD131]
Length = 177
Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 63/171 (36%), Positives = 99/171 (57%), Gaps = 3/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ ED RGWF +T+ + + GL+ FVQ N S++ GT+RG+H+QR P
Sbjct: 8 LKDAVLIEAEPREDHRGWFERTFCMEEMAGAGLKTGFVQHNSSYNHAAGTLRGMHYQRAP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+++ K++ C GRI D+ +D+R +SPTY W ++ A + Q+Y+P GFAHG++TLE
Sbjct: 68 HSEVKVITCTRGRIQDVIIDLRPDSPTYLKWEGFDLKAGDHRQLYVPKGFAHGYLTLEDA 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
T V Y V+ Y+ + GV W D + I W + +SEKD P
Sbjct: 128 TAVSYLVSTAYTPGAEGGVRWDDPAFGIDW---AAEVSVISEKDAAWPDFE 175
>gi|114563924|ref|YP_751438.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella frigidimarina
NCIMB 400]
gi|114335217|gb|ABI72599.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella frigidimarina
NCIMB 400]
Length = 189
Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats.
Identities = 70/169 (41%), Positives = 98/169 (57%), Gaps = 7/169 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-----DVFVQDNHSFSFDCGTIRGLH 57
+ V I RKF D RG+F +T + +Q + VQ+N S S + +RGLH
Sbjct: 8 LEGVMIFSPRKFIDERGFFMETLRQNSFSDAFIQNKMDVPLLVQENQSRSVN-NVLRGLH 66
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
FQ+ + Q KL+R G IFD+AVDIR+ S T+G W+ EIS NG Q++IP GFAHGF
Sbjct: 67 FQQH-FPQGKLIRVARGTIFDVAVDIRQESKTFGQWIGQEISDENGYQMWIPAGFAHGFY 125
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
L ++IYK + +Y + + +AW D ++I WPL P VS+KD
Sbjct: 126 VLSDIADIIYKCSQYYQPDDEQTIAWNDPMLNIQWPLKQHPAPIVSDKD 174
>gi|308510905|ref|XP_003117635.1| hypothetical protein CRE_00181 [Caenorhabditis remanei]
gi|308238281|gb|EFO82233.1| hypothetical protein CRE_00181 [Caenorhabditis remanei]
Length = 190
Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats.
Identities = 66/173 (38%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++K + F D RG+FS++Y+ + +++G + QDNHSFS G +RGLH Q
Sbjct: 20 IPDLLVIKPKVFPDERGFFSESYNKTEWAEKIGYTEDLQQDNHSFS-HYGVLRGLHTQ-- 76
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE- 120
KLV ++G IFD+AVDIR++SPTYG W + ++ANN +IP GF HGF L
Sbjct: 77 -PHMGKLVTVVSGEIFDVAVDIRKDSPTYGKWHGVILNANNKHAFWIPAGFLHGFQVLSK 135
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
V YK + Y + + G+ D+ I++ WP+ D + VSE+D
Sbjct: 136 EGAHVTYKCSAVYDPKTEYGINPFDEDINVDWPIKDKSVVIVSERDTQHASFK 188
>gi|16265004|ref|NP_437796.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase protein
[Sinorhizobium meliloti 1021]
gi|15141143|emb|CAC49656.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase protein
[Sinorhizobium meliloti 1021]
Length = 187
Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats.
Identities = 64/166 (38%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ + +++ ++ D RG+FS+ + L++ G Q NH+ + GTIRG+HFQRPP
Sbjct: 19 LAGLTVIERKQMGDERGFFSRFFCRDELRDFGADGTISQINHTLTRAKGTIRGMHFQRPP 78
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ +AK V C+AG +FD+AVDIR +SPTY W +S N + IP GFAHGF TL N
Sbjct: 79 HDEAKFVSCLAGAVFDVAVDIRPDSPTYLQWHGEILSGENARSMMIPGGFAHGFQTLSEN 138
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E++Y Y+ + + G+ D + I+WPL + +SE+D+
Sbjct: 139 CELVYLHDKPYAPDAEGGLNPLDPRLAISWPLE---VAQMSERDRA 181
>gi|295133946|ref|YP_003584622.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Zunongwangia profunda SM-A87]
gi|294981961|gb|ADF52426.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Zunongwangia profunda SM-A87]
Length = 187
Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats.
Identities = 65/177 (36%), Positives = 101/177 (57%), Gaps = 3/177 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
NIN + + DSRG+F +++++ +E GL FVQDN SFS + G +RGLH Q+
Sbjct: 7 NINGCFEINPKLIYDSRGYFYESFNAARFREKTGLNIQFVQDNQSFS-ERGVLRGLHLQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AQAKLV + G++ D+A+D+R++S T+G +S N Q++IP G AHGF+ L
Sbjct: 66 GIHAQAKLVSVLKGKVLDVAIDLRKDSETFGEVYRTLLSEENKKQLFIPRGCAHGFVVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
YK ++Y ++G+ + D+ + I W L L +S+KD LP S
Sbjct: 126 ETCLFFYKCDNYYHKASEAGIIYDDEDLGIDWQLAKDEL-IISDKDLVLPSFKDYIS 181
>gi|304409908|ref|ZP_07391527.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS183]
gi|307302385|ref|ZP_07582143.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica BA175]
gi|304351317|gb|EFM15716.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS183]
gi|306914423|gb|EFN44844.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica BA175]
Length = 179
Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats.
Identities = 77/170 (45%), Positives = 98/170 (57%), Gaps = 9/170 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE----LGLQ-DVFVQDNHSFSFDCGTIRGL 56
+ V + + + F D RG+F +T+ GL+ VFVQ+NHS S +RGL
Sbjct: 7 ELAEVLVFEPQVFGDERGFFMETFRQSYFDACFALRGLESCVFVQENHSRS-QRNVLRGL 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
HFQR Q KLVR AG IFD+AVDIR +S TYG WV +SA N LQ++IP GFAHGF
Sbjct: 66 HFQRR-KPQGKLVRVCAGSIFDVAVDIRPDSATYGKWVGRVLSAENHLQMWIPPGFAHGF 124
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
L EVIY+ T +Y E +S VAW I WPL+ P +S +D
Sbjct: 125 YVLSDYAEVIYQCTQYYEPEDESVVAWNSAEFAIDWPLI--TAPILSTRD 172
>gi|303326678|ref|ZP_07357120.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio sp. 3_1_syn3]
gi|302862666|gb|EFL85598.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio sp. 3_1_syn3]
Length = 181
Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats.
Identities = 64/170 (37%), Positives = 92/170 (54%), Gaps = 4/170 (2%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
PV ++ D RG+F +T+ + FVQDNHS S G +RG+H+Q
Sbjct: 11 PVLMI-PAVHGDERGFFMETFRQNEFEAQCGPHAFVQDNHSKSRQ-GVLRGMHYQLRQP- 67
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLVR I G+++D+AVD+R +SPT+G + + N +++P GFAHGF+ L E
Sbjct: 68 QGKLVRAIRGQVYDVAVDLRVSSPTFGKSFAALLDDVNHHMLWVPPGFAHGFLVLSSEAE 127
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
IYK T +Y+ + + + W D ITWPLL L VS KD+
Sbjct: 128 FIYKCTTYYAPDDEYCLRWDDPVPGITWPLLAKEL-VVSAKDREGLAFAD 176
>gi|114046910|ref|YP_737460.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sp. MR-7]
gi|113888352|gb|ABI42403.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sp. MR-7]
Length = 180
Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 97/173 (56%), Gaps = 8/173 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE----LGLQ-DVFVQDNHSFSFDCGTIRGL 56
+ V + + + F D RG+F +T+ E GL VQDN S S +RGL
Sbjct: 7 ELAEVLVFEPQVFGDERGFFMETFRQSFFSECLKNRGLDALELVQDNFSRS-QQHVLRGL 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H+Q Y Q KLVR AG IFD+AVDIR S TYG WV +SA+N LQ++IP GFAHGF
Sbjct: 66 HYQCK-YPQGKLVRVCAGSIFDVAVDIRPQSGTYGKWVGRVLSADNHLQMWIPPGFAHGF 124
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
L +VIY+ TD+Y+ + + +AW I WP+ + P +SE+D
Sbjct: 125 YVLSEYADVIYRCTDYYAPDDEYVLAWNSAEFAIDWPVHNE-PPILSERDAKA 176
>gi|307321335|ref|ZP_07600734.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium meliloti AK83]
gi|306892980|gb|EFN23767.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium meliloti AK83]
Length = 179
Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats.
Identities = 65/166 (39%), Positives = 101/166 (60%), Gaps = 3/166 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ + +++ ++ D RG+FS+ + L++ G Q NH+ + GTIRG+HFQRPP
Sbjct: 11 LAGLTVIERKQMGDERGFFSRFFCRDELRDFGADGTIAQINHTLTRATGTIRGMHFQRPP 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ +AK V C+AG +FD+AVDIR +SPTY W +SA N + IP GFAHGF TL +
Sbjct: 71 HDEAKFVSCLAGAVFDVAVDIRPDSPTYLQWHGEILSAENARSMLIPGGFAHGFQTLSDS 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E++Y Y+ + +SG+ D + I+WPL + +SE+D+
Sbjct: 131 CELVYLHDKPYAPDAESGLNPLDPRLAISWPLE---VAQMSERDRA 173
>gi|297569781|ref|YP_003691125.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfurivibrio alkaliphilus
AHT2]
gi|296925696|gb|ADH86506.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfurivibrio alkaliphilus
AHT2]
Length = 346
Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats.
Identities = 74/151 (49%), Positives = 95/151 (62%), Gaps = 4/151 (2%)
Query: 26 SSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIR 84
+ K+ + GL+ FVQDNHS S G +RGLH+Q PP AQ KLVR + G +FD+AVDIR
Sbjct: 196 NEKIFQAATGLRPNFVQDNHSKS-QKGVLRGLHYQLPPKAQGKLVRVVQGEVFDVAVDIR 254
Query: 85 RNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQ 144
NSPT+G WV +SA+N Q++IP GFAHG +TL E +YK TDFY+ EH+ +AW
Sbjct: 255 HNSPTFGRWVGQRLSADNKRQLWIPEGFAHGVLTLTPTAEFLYKTTDFYAPEHERCIAWN 314
Query: 145 DKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
D I I W D P +S KD+ L
Sbjct: 315 DPDIGIDWGYEDA--PLLSAKDRECVPLRNA 343
>gi|158521972|ref|YP_001529842.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfococcus oleovorans
Hxd3]
gi|158510798|gb|ABW67765.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfococcus oleovorans
Hxd3]
Length = 191
Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats.
Identities = 65/186 (34%), Positives = 112/186 (60%), Gaps = 8/186 (4%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ ++ + +++ ++ D+RG+ + + ++ L G Q NH+++ GT+RG+HFQR
Sbjct: 14 LPLSGLCLVQRKRMGDARGFLERLFCAEELTRAGWDGPIAQINHTYTAAAGTLRGMHFQR 73
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+A+ KLV C+ GR+FD+AVD R+ SPT+ W ++ + IP GFAHGF TL
Sbjct: 74 PPHAEKKLVMCLKGRVFDVAVDTRKGSPTFLKWHGEILAPEAANALLIPEGFAHGFQTLT 133
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ E++Y + Y+ +H+ G+ QD +I+I WP L ++S++DQ PFL
Sbjct: 134 DDVEMLYCHSAVYAPDHEGGLHPQDPAINIQWP---DELVTLSDRDQGHPFLGD-----S 185
Query: 181 YDGLPL 186
++G+ L
Sbjct: 186 FEGVAL 191
>gi|257462294|ref|ZP_05626710.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. D12]
gi|317059963|ref|ZP_07924448.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. D12]
gi|313685639|gb|EFS22474.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. D12]
Length = 191
Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats.
Identities = 71/178 (39%), Positives = 108/178 (60%), Gaps = 6/178 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ + I+ + + DSRG+FS+ Y K ++G FVQDN+S S G +RGLHFQ+
Sbjct: 10 SLRGLYIVTSPFYPDSRGFFSEMYHKKEFVKMGFTKEFVQDNYSCS-KRGVLRGLHFQKK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ Q KL+R + GRI D+ +D+R S ++G + S+E+SA N +YIP G AHGF++LE
Sbjct: 69 -HPQEKLLRVLKGRILDVVLDLRMGSESFGKYFSVELSAENQKMLYIPAGMAHGFLSLEE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS----VSEKDQNLPFLNQI 175
+T+V YK TDFY E ++G+ W D+ + I W L L +SEKD+ +
Sbjct: 128 DTQVFYKCTDFYHPEEEAGILWNDRELAIDWKLEAYHLSEENLCLSEKDKQNMTFREF 185
>gi|33862386|ref|NP_893946.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prochlorococcus marinus str.
MIT 9313]
gi|33640499|emb|CAE20288.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prochlorococcus marinus str.
MIT 9313]
Length = 205
Score = 224 bits (573), Expect = 3e-57, Method: Composition-based stats.
Identities = 67/177 (37%), Positives = 104/177 (58%), Gaps = 15/177 (8%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ----------DVFVQDNHSFSFDC 50
M++ +L F D RG+F ++++ + ++ ++ VF QDNHS S
Sbjct: 14 MDLP--LLLTPSVFNDDRGFFFESWNERSFQQALIEGGWNEQAASAVVFRQDNHSRSS-L 70
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPT 110
G +RGLH+Q P Q KLVRC G IFD++VD+RR S T+G V++E++A N Q+++P
Sbjct: 71 GVLRGLHYQLQPEPQGKLVRCTVGAIFDVSVDLRRGSSTFGQCVAVELTAENHKQLWVPV 130
Query: 111 GFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL--DTILPSVSEK 165
GFAHGF+TL EV+YK + F++ + + + W D + I WPL P ++EK
Sbjct: 131 GFAHGFLTLSDQAEVLYKASGFWNRDCERSLRWDDPELAIAWPLERLGGAQPLLAEK 187
>gi|302529983|ref|ZP_07282325.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp. AA4]
gi|302438878|gb|EFL10694.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp. AA4]
Length = 205
Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats.
Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 4/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ ++ R F D+RG F + + + + G Q NHS S GTIRG+HF
Sbjct: 9 LKVSGAFEFVPRVFPDARGLFVAPFQEEAIVRAAGHPLRVAQTNHSVS-RAGTIRGVHFA 67
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C +G + D+ VD+R SPT+G W ++ + + +Y+ G H F+ L
Sbjct: 68 DTPPGQAKYVYCPSGALLDVVVDLRAGSPTFGEWDAVRLDSAEFRAVYVAEGLGHAFVAL 127
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +T + Y ++ Y+ + G+ D ++D+ WP + P VSEKD+ P L +
Sbjct: 128 EDDTVMAYLCSEPYNPAGEHGINPLDPALDLPWPA--DLAPIVSEKDKAAPTLAEA 181
>gi|298527744|ref|ZP_07015148.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511396|gb|EFI35298.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 183
Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats.
Identities = 68/171 (39%), Positives = 109/171 (63%), Gaps = 3/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+N +++ + D RG+FS+T+ + +++GL Q N +F+ GT+RG+HFQ P
Sbjct: 8 LNGAYLIRLERHNDDRGFFSRTFCRREFEKMGLNSEISQCNLAFNNKAGTLRGMHFQTQP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y++ KLV C++G +FD+ +D+R S TY CW ++SA+N +Y+P GFAHG+ TL N
Sbjct: 68 YSEVKLVGCVSGSVFDVIIDLREESTTYSCWFGTKLSADNLEMLYVPKGFAHGYQTLVDN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
V Y V++ Y E+++GV W D ++I+WPL + +VS+KD P LN
Sbjct: 128 AAVSYMVSESYCPEYENGVRWNDPVLNISWPLE---VITVSKKDSAWPLLN 175
>gi|227822978|ref|YP_002826950.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium fredii NGR234]
gi|227341979|gb|ACP26197.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium fredii NGR234]
Length = 177
Score = 224 bits (571), Expect = 6e-57, Method: Composition-based stats.
Identities = 64/170 (37%), Positives = 96/170 (56%), Gaps = 3/170 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ + +++ ++ D RG+FS+ + L++ G Q NH+ + G IRG+HFQRPP
Sbjct: 11 LAGLVVIERKRAGDERGFFSRFFCRDELRDFGGDGSIAQINHTLTRIKGAIRGMHFQRPP 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ + K V C++G +FD+AVDIR +SPTY W +SA N + IP GFAHGF TL
Sbjct: 71 HDETKFVSCLSGAVFDVAVDIRPDSPTYLQWHGEILSAENARSMMIPGGFAHGFQTLAEE 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
E+IY Y+ + G+ D + I WPL T +SE+D+ L
Sbjct: 131 CELIYLHDKPYAPGAEGGLNPLDPRLGIKWPLEVT---QMSERDRAFGLL 177
>gi|62737781|gb|AAX98197.1| sugar epimerase [Streptomyces aizunensis]
Length = 204
Score = 224 bits (571), Expect = 6e-57, Method: Composition-based stats.
Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 4/178 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I + + +D RG F + + S+ + G + Q N S S G +RG+HF
Sbjct: 4 LSIEGAWLYEPLLHDDERGTFLEVFQSQAFELATGRRLELAQVNCSVS-RRGVVRGVHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G + D+ VD+R SPTY W ++E+ + +++ G H F +
Sbjct: 63 DLPPGQAKYVTCVRGAVRDVIVDLRTGSPTYRAWEAVELDDRDRRAVFLSEGLGHAFQAI 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ V+Y T Y+ + GV D + ITW L + P +S KD P L ++
Sbjct: 123 TDDATVVYLTTSGYAPGREHGVHPLDPELGITW--LPGMEPLLSPKDAVAPTLAVAEA 178
>gi|332300858|ref|YP_004442779.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas asaccharolytica
DSM 20707]
gi|332177921|gb|AEE13611.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas asaccharolytica
DSM 20707]
Length = 188
Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats.
Identities = 63/176 (35%), Positives = 97/176 (55%), Gaps = 3/176 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+++ V +++ + D+RG+F++TY + +VQ+N S S G +RGLH QR
Sbjct: 8 LDLAGVYLIEPDCYGDARGYFAETYRTADFAATVSPRPWVQENESSSVR-GVLRGLHLQR 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+QAKLVRC+ G I D+ VD+RR+S TYG W S +S N Q+YIP FAHGF+ L
Sbjct: 67 GEASQAKLVRCVVGEIMDLIVDLRRDSDTYGQWRSYHLSETNHRQLYIPREFAHGFLVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP--LLDTILPSVSEKDQNLPFLNQ 174
+ +YKV + Y+ E + + + D + I W + +S+KD L
Sbjct: 127 DQAKFLYKVDNGYAPESELCIRYDDPQLAIPWESWGIAPEELILSDKDLRGISLAD 182
>gi|319426925|gb|ADV54999.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella putrefaciens 200]
Length = 179
Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats.
Identities = 75/173 (43%), Positives = 99/173 (57%), Gaps = 9/173 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL----KELGLQD-VFVQDNHSFSFDCGTIRGL 56
+ V + + + F D RG+F +T+ GL VFVQDNHS S +RGL
Sbjct: 7 ELAEVLVFEPQVFGDERGFFMETFRQSYFDDCLANRGLPAAVFVQDNHSRS-QQNVLRGL 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H+Q Q KLVR AG IFD+AVDIR NS TYG WV +SA+N LQ++IP GFAHGF
Sbjct: 66 HYQLLQP-QGKLVRVCAGSIFDVAVDIRENSSTYGKWVGRILSADNHLQMWIPPGFAHGF 124
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
L +VIY+ TD+Y+ + + +AW I WPLL P +S +D +
Sbjct: 125 YVLSDYADVIYRCTDYYAPQDEYVLAWDHADFAIDWPLL--AAPILSTRDSDA 175
>gi|268579719|ref|XP_002644842.1| Hypothetical protein CBG05010 [Caenorhabditis briggsae]
gi|187035274|emb|CAP25601.1| hypothetical protein CBG_05010 [Caenorhabditis briggsae AF16]
Length = 190
Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats.
Identities = 64/173 (36%), Positives = 97/173 (56%), Gaps = 6/173 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++K + F D RG+FS++Y+ + +++G + QDNHSFS G +RGLH Q
Sbjct: 20 IPDLLVIKPKVFPDERGFFSESYNKTEWAEKIGYTEDLQQDNHSFS-HYGVLRGLHTQ-- 76
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE- 120
KLV ++G IFD+AVDIR++SPTYG W + ++ +N +IP GF HGF L
Sbjct: 77 -PHMGKLVTVVSGEIFDVAVDIRKDSPTYGKWHGVILNGDNKHAFWIPAGFLHGFQVLSK 135
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
V YK + Y + + G+ D+ I++ WP+ D VSE+D
Sbjct: 136 EGAHVTYKCSAVYDPKTEFGINPFDEDINVDWPIKDKASVIVSERDTQHASFK 188
>gi|15077643|gb|AAK83288.1|AF355466_1 putative TDP-4-keto-6-deoxyglucose 3,5 epimerase [Saccharopolyspora
spinosa]
Length = 202
Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats.
Identities = 53/179 (29%), Positives = 78/179 (43%), Gaps = 3/179 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I + F D RG F + G Q NHS S IRG+HF
Sbjct: 6 LDITGAYEFTPKAFPDHRGLFVAPFQEAAFIDATGHPLRVAQTNHSVSAR-NVIRGVHFS 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C G + D+ +DIR SPT+G W ++ + +Y+ G H F L
Sbjct: 65 DVPPGQAKYVYCPQGALLDVVIDIRVGSPTFGRWEAVRLDDTEYRAVYLAEGLGHAFAAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
+T + Y + Y+ + G+ D + + W LD P +SEKD+ P L +
Sbjct: 125 TDDTVMTYLCSTPYTPGAEHGIDPFDPELALPWSDLDG-EPVLSEKDRTAPSLAEAADN 182
>gi|226363369|ref|YP_002781151.1| dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase [Rhodococcus opacus
B4]
gi|226241858|dbj|BAH52206.1| dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase [Rhodococcus opacus
B4]
Length = 193
Score = 223 bits (570), Expect = 8e-57, Method: Composition-based stats.
Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 6/180 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + + R+F D RG F + + + G Q N S S G +RG+H+
Sbjct: 6 LKVPGAWEITPRQFGDDRGVFLEWFKGSEFEAAVGHPLDLAQANCSVSA-AGVLRGIHYT 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G D+ VD+R SP +G W S+ I + +Y+P G H ++L
Sbjct: 65 DNPPGQAKYVTCVKGAFLDVIVDLRVGSPMFGQWDSVLIDDVDRRAVYLPAGVGHAILSL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQI 175
E + V+Y + Y+ D + D + I WP + + +SEKD P L Q
Sbjct: 125 EDASTVMYLCSIEYTPALDHDLHPLDPDLGIDWPTVGRDGSPLTFQLSEKDSAAPSLQQA 184
>gi|163748892|ref|ZP_02156144.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella benthica KT99]
gi|161331666|gb|EDQ02471.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella benthica KT99]
Length = 181
Score = 223 bits (570), Expect = 8e-57, Method: Composition-based stats.
Identities = 71/164 (43%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I +++L R ED RG F +T+ ++ FVQ+NHS S G +RGLHFQ P
Sbjct: 8 IAGLKLLSPRVHEDERGSFCETFRDSWFRQQIADVTFVQENHSRSIK-GCLRGLHFQ-SP 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+Q KL+ + G IFD+AVD+R++SP+ G W +SANN Q+++P GFAHGF
Sbjct: 66 RSQGKLIGVVVGEIFDVAVDLRQDSPSLGQWFGTYLSANNRQQMWLPAGFAHGFYVTSNA 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E+IYK TD+Y+ E + +AW D S+ I WPL + P +S KD
Sbjct: 126 AEIIYKCTDYYAPEFEKILAWDDASLAINWPLEGQV-PILSSKD 168
>gi|72383078|ref|YP_292433.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prochlorococcus marinus str.
NATL2A]
gi|72002928|gb|AAZ58730.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prochlorococcus marinus str.
NATL2A]
Length = 196
Score = 223 bits (570), Expect = 9e-57, Method: Composition-based stats.
Identities = 73/180 (40%), Positives = 112/180 (62%), Gaps = 7/180 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-----FVQDNHSFSFDCGTIRGLH 57
+ + F D RG F ++++S++ +L L F+QDN SFS G +RGLH
Sbjct: 14 LEGPLVFSPCLFNDERGNFFESWNSQIFDDLLLNHDQGPQIFLQDNQSFS-RKGVLRGLH 72
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
+Q P+ Q KLVRCIAG I+D+ VD+R +S T+ W S+ +SA N Q+++P GFAHGF+
Sbjct: 73 YQITPHVQGKLVRCIAGEIYDVIVDLRMSSKTFKSWGSINLSAQNKKQLWVPVGFAHGFL 132
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+L TEV+YK TD++ + + G++W D I I WP + + P +S+KD LP +++ S
Sbjct: 133 SLTDCTEVLYKTTDYWDPKCERGISWDDPDIKIIWP-ENFLHPELSKKDLMLPSFSELKS 191
>gi|114777846|ref|ZP_01452777.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Mariprofundus ferrooxydans
PV-1]
gi|114551837|gb|EAU54377.1| dTDP-6-deoxy-L-mannose-dehydrogenase [Mariprofundus ferrooxydans
PV-1]
Length = 183
Score = 223 bits (570), Expect = 9e-57, Method: Composition-based stats.
Identities = 71/185 (38%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++ +T + D RG F++ + L + + VQ NHS + G +RG+H+Q
Sbjct: 7 KIAGVQVAETIRIADQRGAFARFFCENELAPVLGERHIVQINHSRTSQPGALRGMHYQHA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+A+ K+VRCI GR++D+AVD+RR+SPT+ W +E+SA N L + IP G AHGF LE
Sbjct: 67 PHAEMKMVRCIKGRVWDVAVDLRRDSPTFLQWHGVELSAENDLMMVIPEGCAHGFQVLEA 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+E++Y T Y+ + G+ D IDI WPL T +S++D++ P L++ Y
Sbjct: 127 ESELLYLHTARYTPTCEGGMRHDDPLIDIAWPLAVTD---ISDRDRSHPLLDE-----HY 178
Query: 182 DGLPL 186
G+ L
Sbjct: 179 SGVKL 183
>gi|160876120|ref|YP_001555436.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS195]
gi|160861642|gb|ABX50176.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS195]
gi|315268317|gb|ADT95170.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS678]
Length = 179
Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats.
Identities = 74/170 (43%), Positives = 96/170 (56%), Gaps = 9/170 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL----KELGLQ-DVFVQDNHSFSFDCGTIRGL 56
+ V + + + F D RG+F +T+ + G + VFVQ+NHS S +RGL
Sbjct: 7 ELAEVLVFEPQVFGDERGFFMETFRQSYFDACFAQRGFESFVFVQENHSRS-QRNVLRGL 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
HFQR Q KLVR AG IFD+AVDIR +S TYG WV +SA N LQ++ P GFAHGF
Sbjct: 66 HFQRR-KPQGKLVRVCAGSIFDVAVDIRSDSATYGKWVGRVLSAENHLQMWTPPGFAHGF 124
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
L EVIY+ T +Y E + VAW I WPL+ P +S +D
Sbjct: 125 YVLSDYAEVIYQCTQYYDPEDEGVVAWNSAEFAIDWPLI--AAPILSARD 172
>gi|307309425|ref|ZP_07589084.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium meliloti
BL225C]
gi|306900155|gb|EFN30774.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sinorhizobium meliloti
BL225C]
Length = 179
Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats.
Identities = 63/166 (37%), Positives = 98/166 (59%), Gaps = 3/166 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ + +++ ++ D RG+FS+ + L++ G Q NH+ + GTIRG+HFQRPP
Sbjct: 11 LAGLTVIERKQMGDERGFFSRFFCRDELRDFGADGTISQINHTLTRAKGTIRGMHFQRPP 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ +AK V C+ G +FD+AVDIR +SPTY W +S N + IP GFAHGF TL N
Sbjct: 71 HDEAKFVSCLVGAVFDVAVDIRPDSPTYLQWHGEILSGENARSMMIPGGFAHGFQTLSEN 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
E++Y Y+ + + G+ D + I+WPL + +SE+D+
Sbjct: 131 CELVYLHDKPYAPDAEGGLNPLDPRLAISWPLE---VAQMSERDRA 173
>gi|298209185|ref|YP_003717364.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Croceibacter atlanticus
HTCC2559]
gi|83849112|gb|EAP86981.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Croceibacter atlanticus
HTCC2559]
Length = 182
Score = 222 bits (568), Expect = 1e-56, Method: Composition-based stats.
Identities = 63/174 (36%), Positives = 106/174 (60%), Gaps = 3/174 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ I++ + F D RG+F + ++ ++ E L FVQDN S S G IRGLH+Q+
Sbjct: 8 LKDCYIIEPKVFYDERGYFYEQFNEQVFQAETKLNVKFVQDNVSES-KFGVIRGLHYQQG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
++QAKLV + G + D+A+D+R+NSP++G S+ +S+ N Q+++P GFAHGF L
Sbjct: 67 MHSQAKLVTVLEGEVLDVAIDLRKNSPSFGKQFSMILSSENKKQLFVPKGFAHGFSVLSK 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
YK +Y+ E ++G+ + D++++I W L D + V++KD++LP
Sbjct: 127 TARFFYKCDAYYNKESETGIKYNDETLNIDWQLKDGEI-IVNDKDKHLPDFKSA 179
>gi|265999143|ref|ZP_05465155.2| dTDP-4-dehydrorhamnose reductase [Brucella melitensis bv. 2 str.
63/9]
gi|263092407|gb|EEZ16660.1| dTDP-4-dehydrorhamnose reductase [Brucella melitensis bv. 2 str.
63/9]
Length = 184
Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 102/158 (64%), Gaps = 3/158 (1%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
+D RGWF++ Y E L+ F Q + SFS + GT+RGLH+Q P+++ KLV C+ G
Sbjct: 30 KDERGWFARVYCEAAFAERKLETHFPQHSLSFSREKGTLRGLHYQNEPHSETKLVTCLQG 89
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
++D+ VD+R +SPTY W +E+SA NG+Q+YIP G AHGF TL + + Y ++ Y+
Sbjct: 90 IVWDVLVDLRPHSPTYRRWAGVELSAENGVQLYIPEGCAHGFQTLTDDVLIRYMISKPYA 149
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+H +G+ + D ++DI WP ++ +S+KD PFL
Sbjct: 150 PDHAAGIRYDDPALDIPWPEKPSV---ISQKDLGWPFL 184
>gi|217972671|ref|YP_002357422.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS223]
gi|217497806|gb|ACK45999.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS223]
Length = 179
Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats.
Identities = 74/170 (43%), Positives = 98/170 (57%), Gaps = 9/170 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL----KELGLQ-DVFVQDNHSFSFDCGTIRGL 56
+ V + + + F D RG+F +T+ + G + VFVQ+NHS S +RGL
Sbjct: 7 ELAEVLVFEPQVFGDERGFFMETFRQSYFDACFAQRGFESFVFVQENHSRS-QRNVLRGL 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
HFQR Q KLVR AG IFD+AVDIR +S TYG WV +SA N LQ++IP GFAHGF
Sbjct: 66 HFQRR-KPQGKLVRVCAGSIFDVAVDIRADSATYGKWVGRVLSAENHLQMWIPPGFAHGF 124
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
L +VIY+ T +Y+ E + VAW I WPL+ P +S +D
Sbjct: 125 YVLSDYADVIYQCTQYYAPEDEGVVAWNSAEFAIDWPLI--AAPILSTRD 172
>gi|111021079|ref|YP_704051.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus jostii RHA1]
gi|110820609|gb|ABG95893.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus jostii RHA1]
Length = 195
Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats.
Identities = 54/180 (30%), Positives = 82/180 (45%), Gaps = 6/180 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + + R+F D RG F + + + G Q N S S G +RG+HF
Sbjct: 6 LKVPGAWEITPRQFGDDRGVFLEWFKGSEFEAAVGHSLELAQANCSVSA-AGVLRGIHFT 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G D+ VD+R SP +G W S+ I + +Y+P G H ++L
Sbjct: 65 DNPPGQAKYVTCVKGAFLDVIVDLRVGSPMFGQWDSVLIDDADRRAVYLPAGVGHAILSL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQI 175
E + V+Y + Y+ D + D + I WP + + +SEKD P L Q
Sbjct: 125 EDASTVMYLCSIEYTPALDHDLHPLDPELGIDWPTVGRDGSPLTFQLSEKDSAAPSLQQA 184
>gi|282892107|ref|ZP_06300582.1| hypothetical protein pah_c207o037 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281498002|gb|EFB40346.1| hypothetical protein pah_c207o037 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 164
Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats.
Identities = 68/163 (41%), Positives = 97/163 (59%), Gaps = 5/163 (3%)
Query: 14 FEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
F D+RG+F ++Y + E+G FVQDNHS S G +RGLH+Q Q KLVR +
Sbjct: 2 FRDARGFFLESYRASDFAQEIGAHKAFVQDNHSHSLQ-GVLRGLHYQYK-KPQGKLVRVV 59
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
G IFD+AVD+R++SPTYG WV +SA ++IP FAHGF+ L + +V+YK TD+
Sbjct: 60 TGEIFDVAVDLRQSSPTYGKWVGRHLSAERPCSMWIPPEFAHGFLVLSSHADVLYKTTDY 119
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y + + W D + I WPL P +S+KD + ++
Sbjct: 120 YDPSSEFCLRWNDPQLAINWPLQQP--PMLSKKDTDGKLFKEL 160
>gi|312194518|ref|YP_004014579.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EuI1c]
gi|311225854|gb|ADP78709.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EuI1c]
Length = 182
Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats.
Identities = 58/175 (33%), Positives = 95/175 (54%), Gaps = 3/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V I+ F D RG F++T+ + GL Q + +++ GT+RGLH+
Sbjct: 7 GLDGVFIVDIEPFSDDRGLFARTFCREEFAAAGLDVDVAQCSVAYNRRAGTVRGLHWAGA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P + KLVR G + D+ VD R SPT+ V++E+SA+N ++I G AHG+ TL
Sbjct: 67 PVQETKLVRVTRGALLDVVVDTRPGSPTFLRHVAVELSADNHRALFIGAGLAHGYQTLVD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+TE Y++ + D G+ D ++ I WPL ++ +S+KD+ P L + D
Sbjct: 127 DTEASYQMNVPFRPGFDRGLRHDDPALGIAWPLPVSV---ISDKDRAWPLLGEAD 178
>gi|158312645|ref|YP_001505153.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EAN1pec]
gi|158108050|gb|ABW10247.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EAN1pec]
Length = 189
Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats.
Identities = 61/170 (35%), Positives = 96/170 (56%), Gaps = 3/170 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V I+ F D RG F++T+ + GL+ Q + +++ GTIRGLH+ P
Sbjct: 8 IDGVTIVDVEAFSDDRGLFARTFCQEEFAAAGLEVAVAQCSVAYNRRAGTIRGLHWAGEP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ KLVRC G + D+ VD R S TY V++E++A+N ++I G AHG+ TL +
Sbjct: 68 VRETKLVRCTRGALLDVIVDSRPGSATYLEHVAVELTADNHRALFIAAGLAHGYQTLVDD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
TE Y++ ++ HD G+ + D + I WPL ++ +SEKD+ P L
Sbjct: 128 TEATYQMNVPFTPGHDRGLRFDDPRLGIAWPLPVSV---ISEKDRGWPLL 174
>gi|158312833|ref|YP_001505341.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EAN1pec]
gi|158108238|gb|ABW10435.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EAN1pec]
Length = 207
Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 4/178 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + R+ D RG F + + L+ + G + Q N S S GT+RG+H+
Sbjct: 6 LPIADAWLFTPRQHSDPRGTFLEWFRVDALESVTGHRLELAQANASVS-RAGTLRGVHYA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P +QAK V C++GR+ D VDIR SPT+G ++ + + +Y+ G H FM L
Sbjct: 65 QVPPSQAKYVTCVSGRVLDCVVDIRVGSPTFGSHAAVLLDDVDRRGLYVSEGLGHAFMAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ Y + Y+ E + G+ D + + WP + P +SEKD P L+Q +
Sbjct: 125 TDGAAITYLCSTPYTPEREFGINPLDPDLALPWPAE--LTPLLSEKDTAAPTLSQAAA 180
>gi|17550412|ref|NP_509046.1| hypothetical protein C14F11.6 [Caenorhabditis elegans]
gi|1049348|gb|AAA80364.1| Hypothetical protein C14F11.6 [Caenorhabditis elegans]
Length = 190
Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats.
Identities = 64/173 (36%), Positives = 98/173 (56%), Gaps = 6/173 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++K + F D RG+FS++Y+ + +++G + QDNHSFS G +RGLH Q
Sbjct: 20 IPDLLVIKPKVFPDERGFFSESYNKTEWAEKIGYTEDLQQDNHSFS-HYGVLRGLHTQ-- 76
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE- 120
KLV ++G IFD+AVDIR++SPTYG W + ++ +N +IP GF HGF L
Sbjct: 77 -PHMGKLVTVVSGEIFDVAVDIRKDSPTYGKWHGVVLNGDNKHAFWIPAGFLHGFQVLSK 135
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
V YK + Y + + G+ D+ I++ WP+ D + VSE+D
Sbjct: 136 EGAHVTYKCSAVYDPKTEFGINPFDEDINVDWPIRDKTVVIVSERDTQHASFK 188
>gi|56751451|ref|YP_172152.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus elongatus PCC
6301]
gi|81298869|ref|YP_399077.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus elongatus PCC
7942]
gi|56686410|dbj|BAD79632.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus elongatus PCC
6301]
gi|81167750|gb|ABB56090.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus elongatus PCC
7942]
Length = 181
Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats.
Identities = 66/173 (38%), Positives = 101/173 (58%), Gaps = 5/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKL--LKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V L ++ F+D RG F + + E Q N S + G IRGLH Q
Sbjct: 10 IAGVLELISQPFQDHRGAFLNAFREQEPAFAEAWGDRRIAQVNLSRTDRVGAIRGLHLQA 69
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+++AKLVRC+ GR++D+AVD+R++S TYG W ++E+S + IP G AHGF LE
Sbjct: 70 APHSEAKLVRCLRGRVWDVAVDLRQDSATYGQWQAVELSPEQANALLIPEGCAHGFQVLE 129
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
N+E++Y + + E ++G+ W D + I WPL + +S++D+ LPFL+
Sbjct: 130 ANSELLYLHSGTWVPEAETGIRWDDPQLAIAWPLP---MSELSDRDRALPFLS 179
>gi|145590610|ref|YP_001152612.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pyrobaculum arsenaticum DSM
13514]
gi|145282378|gb|ABP49960.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pyrobaculum arsenaticum DSM
13514]
Length = 165
Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats.
Identities = 71/168 (42%), Positives = 95/168 (56%), Gaps = 6/168 (3%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F D+RG+F++ + GL FVQ N SFS +RGLH+Q P Q KLV +
Sbjct: 2 FPDARGFFAELWKRGEYLAAGLPYDFVQANLSFS-KQYVVRGLHYQLKPSEQGKLVTVVK 60
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
GR+ D+AVDIRR SP YG +V++E+ G+ ++IP GFAHGF LE T +Y VT Y
Sbjct: 61 GRVLDVAVDIRRGSPWYGRYVAVEL--EPGVALWIPPGFAHGFQALEE-TLFLYLVTKEY 117
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+ + + W D I I WP D +SEKD P L + + FEY
Sbjct: 118 DQQRERCIGWDDPEIGIRWPAHDKA--ILSEKDAKCPPLKEAEDNFEY 163
>gi|257452250|ref|ZP_05617549.1| dTDP-4-dehydrorhamnose reductase [Fusobacterium sp. 3_1_5R]
gi|317058793|ref|ZP_07923278.1| spore coat polysaccharide biosynthesis protein spsK [Fusobacterium
sp. 3_1_5R]
gi|313684469|gb|EFS21304.1| spore coat polysaccharide biosynthesis protein spsK [Fusobacterium
sp. 3_1_5R]
Length = 470
Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats.
Identities = 71/179 (39%), Positives = 107/179 (59%), Gaps = 6/179 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I+ T KFED RG+FS+ Y KELG+QD F+Q+N S+S GT+RGLHFQ
Sbjct: 10 ELEGVYIIDTLKFEDERGYFSEIYQKDCFKELGIQDDFIQENISYS-KKGTLRGLHFQTK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KL+R + G+I+D+ VD+R NS TYG + +E+ + ++IP G AHGF++L+
Sbjct: 69 KK-QGKLLRVLKGKIYDVIVDLRENSKTYGQHIGIELQGQDQKLLWIPPGCAHGFLSLDE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQID 176
V Y+ T+ Y+ E++SG+ W D ++I W L + +SEKD+ +
Sbjct: 128 KNVVQYQCTENYAAEYESGILWSDTDLNIDWKLKEYGILKEELIISEKDRRQKSFEDYE 186
>gi|17989175|ref|NP_541808.1| dTDP-4-dehydrorhamnose 3,5-epimerase / dTDP-4-dehydrorhamnose
reductase [Brucella melitensis bv. 1 str. 16M]
gi|260564541|ref|ZP_05835026.1| dTDP-4-dehydrorhamnose reductase [Brucella melitensis bv. 1 str.
16M]
gi|265989756|ref|ZP_06102313.1| dTDP-4-dehydrorhamnose reductase [Brucella melitensis bv. 1 str.
Rev.1]
gi|265993136|ref|ZP_06105693.1| dTDP-4-dehydrorhamnose reductase [Brucella melitensis bv. 3 str.
Ether]
gi|16740537|gb|AAL27671.1| Bme22 [Brucella melitensis]
gi|17985028|gb|AAL54072.1| dtdp-4-dehydrorhamnose 3,5-epimerase / dtdp-4-dehydrorhamnose
reductase [Brucella melitensis bv. 1 str. 16M]
gi|260152184|gb|EEW87277.1| dTDP-4-dehydrorhamnose reductase [Brucella melitensis bv. 1 str.
16M]
gi|262764006|gb|EEZ10038.1| dTDP-4-dehydrorhamnose reductase [Brucella melitensis bv. 3 str.
Ether]
gi|263000425|gb|EEZ13115.1| dTDP-4-dehydrorhamnose reductase [Brucella melitensis bv. 1 str.
Rev.1]
Length = 184
Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 102/158 (64%), Gaps = 3/158 (1%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
+D RGWF++ Y E L+ F Q + SFS + GT+RGLH+Q P+++ KLV C+ G
Sbjct: 30 KDERGWFARVYCEAAFAERKLETHFPQHSLSFSREKGTLRGLHYQNEPHSETKLVTCLQG 89
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
++D+ VD+R +SPTY W +E+SA NG+Q+YIP G AHGF TL + + Y ++ Y+
Sbjct: 90 IVWDVLVDLRPHSPTYRRWAGVELSAENGVQLYIPEGCAHGFQTLTDDVLIRYMISKPYA 149
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+H +G+ + D ++DI WP ++ +S+KD PFL
Sbjct: 150 PDHAAGIRYDDPALDIPWPEKPSV---ISQKDLGWPFL 184
>gi|307700769|ref|ZP_07637794.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus mulieris
FB024-16]
gi|307613764|gb|EFN93008.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus mulieris
FB024-16]
Length = 204
Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats.
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 6/180 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + + ++F D RG F + Y ++ G VQ N S S G +RG+HF
Sbjct: 6 LKVPGAWEITPKQFPDERGAFMEMYKLGEFAKVVGHPLSLVQANCSIS-KAGVVRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V C G + D AVDIR SPT+G W S+ + + IY+ G H F+ L
Sbjct: 65 EVPPSQAKYVMCPRGAVLDFAVDIRVGSPTFGAWDSVLLEGEHRRAIYLSEGLGHCFVAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQI 175
E ++ V+Y ++ Y+ + GV+ D + + +P D + +SEKD P L +
Sbjct: 125 EDDSTVVYLCSEGYNPGREHGVSPVDPEVGLVFPDKDLQGRPLQVLLSEKDTAAPSLAEA 184
>gi|288917896|ref|ZP_06412256.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EUN1f]
gi|288350685|gb|EFC84902.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EUN1f]
Length = 207
Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats.
Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 4/178 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + RK D RG F + + + L+ G + Q N S S GT+RG+H+
Sbjct: 6 LPIADTWLFTPRKHSDPRGTFLEWFRTDALESVAGHRLELAQANASVS-RAGTLRGVHYA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P +QAK V C++GR+ D VDIR SPT+G ++ + + +YI G H FM L
Sbjct: 65 QVPPSQAKYVTCVSGRVLDCVVDIRLGSPTFGAHAAVILDDVDRRGLYIAEGLGHAFMAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
N + Y + Y+ + G+ D +D+ WP I P +SEKD P L+Q +
Sbjct: 125 TDNAVITYLCSAPYTPAREYGINPLDPDLDLPWP--PDITPLLSEKDVAAPSLSQAAA 180
>gi|153001398|ref|YP_001367079.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS185]
gi|151366016|gb|ABS09016.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella baltica OS185]
Length = 179
Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats.
Identities = 75/173 (43%), Positives = 97/173 (56%), Gaps = 9/173 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL----KELGLQ-DVFVQDNHSFSFDCGTIRGL 56
+ V + + + F D RG+F +T+ + G + VFVQ NHS S +RGL
Sbjct: 7 ELAEVLVFEPQVFGDERGFFMETFRQSYFDACFAQRGFESCVFVQKNHSRS-QRNVLRGL 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
HFQR Q KLVR AG IFD+AVDIR +S TYG WV +SA N LQ++IP GFAHGF
Sbjct: 66 HFQRR-KPQGKLVRVCAGSIFDVAVDIRPDSATYGKWVGRVLSAENHLQMWIPPGFAHGF 124
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
L +VIY+ T +Y E +S VAW I WPL+ P +S +D
Sbjct: 125 YVLSDYADVIYQCTQYYDPEDESVVAWNSAEFAIDWPLI--TAPILSTRDSIA 175
>gi|117925732|ref|YP_866349.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Magnetococcus sp. MC-1]
gi|117609488|gb|ABK44943.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Magnetococcus sp. MC-1]
Length = 182
Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats.
Identities = 67/175 (38%), Positives = 106/175 (60%), Gaps = 4/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ +L++ +F D RG+F+++Y+ K +L GL+ FVQDNHS S +RG+H+Q
Sbjct: 8 LHGALVLQSTRFTDDRGFFTESYNHKKFSQLTGLKTHFVQDNHSRS-KRHVLRGMHYQLR 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
QAKLV+ G ++D+ VD+R++SPT+ L +SA+NGL +++P GFAHGF+ L
Sbjct: 67 QP-QAKLVQVCQGEVYDVIVDMRQSSPTFKQHFGLRLSADNGLALWVPEGFAHGFLVLSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
++ YKV + Y + + W D I I WPL D P +S KD +Q++
Sbjct: 126 QADLHYKVNNDYDPTSERCLHWADAEIGIAWPLSDQ-PPLLSPKDAQGLPFDQLE 179
>gi|317403785|gb|EFV84265.1| DTDP-6-deoxy-L-mannose-dehydrogenase [Achromobacter xylosoxidans
C54]
Length = 183
Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats.
Identities = 66/172 (38%), Positives = 101/172 (58%), Gaps = 3/172 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I +++TR +D+RG F++ + + L + VQ N S + G +RG+HFQRPP
Sbjct: 8 IAGAVVVETRPHQDTRGAFTRLFCADALSAVIGSRQIVQINQSRTLHAGAVRGMHFQRPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+A+ KLVRCI GR++D+ VD+R SPT+ W + E+ A + + IP G AHGF LE N
Sbjct: 68 HAEMKLVRCIRGRVWDVVVDLRAGSPTFLRWHAQELDAESARMLVIPEGCAHGFQVLEAN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+E++Y T +Y+ ++GV D + I WPL T +S +DQ L+
Sbjct: 128 SELLYLHTAYYTPYAEAGVRHDDPRLGIRWPLAATD---LSSRDQAHAPLSD 176
>gi|269978074|ref|ZP_06185024.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus mulieris 28-1]
gi|269933583|gb|EEZ90167.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus mulieris 28-1]
Length = 204
Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats.
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 6/180 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + + ++F D RG F + Y ++ G VQ N S S G +RG+HF
Sbjct: 6 LKVPGAWEITPKQFPDERGAFMEMYKLGEFAKVVGHPLSLVQANCSIS-KAGVVRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V C G + D AVDIR SPT+G W S+ + + IY+ G H F+ L
Sbjct: 65 EVPPSQAKYVMCPRGAVLDFAVDIRVGSPTFGAWDSVLLEGEHRRAIYLSEGLGHCFVAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQI 175
E ++ V+Y ++ Y+ + GV+ D + + +P D + +SEKD P L +
Sbjct: 125 EDDSTVVYLCSEGYNPGREHGVSPVDPEVGLVFPDKDLQGRPLKVLLSEKDTAAPSLAEA 184
>gi|312065238|ref|XP_003135693.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Loa loa]
gi|307769139|gb|EFO28373.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Loa loa]
Length = 194
Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats.
Identities = 61/173 (35%), Positives = 94/173 (54%), Gaps = 5/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ +++++ + F D+RG+F ++Y+ L LG + F QDNHS+S G +RGLH Q
Sbjct: 19 QIDGLKLIRPKLFPDARGYFVESYNEYELGALGFFEKFKQDNHSYS-KSGVLRGLHAQ-- 75
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
KLV I+G+I+D+AVDIR S T+G W + + +IP GF HGF L
Sbjct: 76 -PGMGKLVSVISGKIYDVAVDIRPTSETFGKWYGVVLDERARTGFWIPDGFLHGFYVLSE 134
Query: 122 -NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
V YK T Y+ + + GV D + I W + D +S++D++ L
Sbjct: 135 KGAHVTYKCTAIYNAQAEFGVNPFDPELAIDWRINDPSKLIISDRDRSHQNLK 187
>gi|218663788|ref|ZP_03519718.1| putative methyltransferase [Rhizobium etli IE4771]
Length = 470
Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats.
Identities = 67/175 (38%), Positives = 101/175 (57%), Gaps = 3/175 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ D RG F++T+ ++ GL V+ Q N S + GT+RG+H+Q P
Sbjct: 298 VAGAFVVEVEVRADDRGMFARTFCAESFAAHGLASVYPQCNLSQNHRRGTLRGMHYQADP 357
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AKLVR + GR+FD+A+D+RR SPTY W S+E+ A YIP G AHGF+TLE +
Sbjct: 358 KPEAKLVRAVRGRVFDVALDLRRESPTYLKWASVELDATIHNAFYIPAGCAHGFLTLEDD 417
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E+ Y+++ Y E GV W D + I WP ++ +SE+D L +Q S
Sbjct: 418 CELFYQMSAIYLPELARGVRWDDPAFSIAWPFTPSV---ISERDVALESYSQEKS 469
>gi|227875184|ref|ZP_03993326.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus mulieris ATCC
35243]
gi|227844089|gb|EEJ54256.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus mulieris ATCC
35243]
Length = 204
Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats.
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 6/180 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + + ++F D RG F + Y ++ G VQ N S S G +RG+HF
Sbjct: 6 LKVPGAWEITPKQFPDERGAFMEMYKLGEFAKVVGHPLSLVQANCSIS-KAGVVRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V C G + D AVDIR SPT+G W S+ + + IY+ G H F+ L
Sbjct: 65 EVPPSQAKYVMCPRGAVLDFAVDIRVGSPTFGAWDSVLLEGEHRRAIYLSEGLGHCFVAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQI 175
E ++ V+Y ++ Y+ + GV+ D + + +P D + +SEKD P L +
Sbjct: 125 EDDSTVVYLCSEGYNPGREHGVSPVDPEVGLVFPDKDLAGRPLKVLLSEKDTAAPSLAEA 184
>gi|309812174|ref|ZP_07705932.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Dermacoccus sp.
Ellin185]
gi|308433861|gb|EFP57735.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Dermacoccus sp.
Ellin185]
Length = 200
Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats.
Identities = 59/178 (33%), Positives = 94/178 (52%), Gaps = 4/178 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I+ ++ R+F D RG F + + L E G + VQ N S S GT+RG+HF
Sbjct: 6 LKIDGAYVVTPRQFPDGRGVFMEGFRGDKLAEHLGHRMDVVQSNISVSSR-GTVRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK + ++G I D VDIR SPT+G W S+ + + +Y+ G H F L
Sbjct: 65 DVPPSQAKYITVLSGSIIDFIVDIRVGSPTFGQWESVVLDTSERKAVYLAEGLGHAFCAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E ++ +Y + Y+ E + G+ D ++ +T L D I P +S KD+ P L + ++
Sbjct: 125 EDDSTAMYLCSAPYTPEREHGINPLDTTVGLT--LPDDIEPLLSPKDEAAPSLAEAEA 180
>gi|225350715|ref|YP_002720693.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brachyspira hyodysenteriae
WA1]
gi|225216399|gb|ACN85132.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brachyspira hyodysenteriae
WA1]
Length = 177
Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats.
Identities = 66/172 (38%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI I++ ED RG+F + + + LK+ G+ Q N S+S GT+RG+H+Q
Sbjct: 7 NIEGAYIIQNNYIEDERGYFLRLFCNDELKKSGIDFEVKQSNMSYSAKKGTLRGMHYQIA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYA+ K+VRCI G++FD DIR++SPT+G ++E+S NG IYIP AHG TLE
Sbjct: 67 PYAEIKVVRCIKGKVFDAIADIRKDSPTFGQHFTVELSEENGKMIYIPPYVAHGIETLED 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
++ + Y V + + W D +I WP+ D + +SEKD+++P
Sbjct: 127 HSMICYFVGASFVPNAYGYLRWNDPFFNIDWPIKDNL--IMSEKDKSIPDFE 176
>gi|88192518|pdb|2C0Z|A Chain A, The 1.6 A Resolution Crystal Structure Of Novw: A
4-Keto-6- Deoxy Sugar Epimerase From The Novobiocin
Biosynthetic Gene Cluster Of Streptomyces Spheroides
Length = 216
Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats.
Identities = 56/176 (31%), Positives = 78/176 (44%), Gaps = 5/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + D RG F Y E G Q N S S G +RG+HF
Sbjct: 15 LGIEGVWEITPEQRADPRGVFLDWYHVDRFAEAIGRPLRLAQANLSVSVR-GVVRGIHFV 73
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G +FD+ VD+R SPTYGCW + + +Y+ G HGF +
Sbjct: 74 DVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAI 133
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ Y + Y + GV D + I WP T P +S +DQ+ L +
Sbjct: 134 SDEATLCYLSSGTYDPATEHGVHPLDPELAIDWP---TGTPLLSPRDQDALLLAEA 186
>gi|306818444|ref|ZP_07452167.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus mulieris ATCC
35239]
gi|304648617|gb|EFM45919.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus mulieris ATCC
35239]
Length = 204
Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats.
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 6/180 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + + ++F D RG F + Y ++ G VQ N S S G +RG+HF
Sbjct: 6 LKVPGAWEITPKQFPDERGAFMEMYKLGEFAKVVGHPLSLVQANCSIS-KAGVVRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V C G + D AVDIR SPT+G W S+ + + IY+ G H F+ L
Sbjct: 65 EVPPSQAKYVMCPRGAVLDFAVDIRVGSPTFGVWDSVLLEGEHRRAIYLSEGLGHCFVAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQI 175
E ++ V+Y ++ Y+ + GV+ D + + +P D + +SEKD P L +
Sbjct: 125 EDDSTVVYLCSEGYNPGREHGVSPVDPEVGLVFPDKDLQGRPLQVLLSEKDTAAPSLAEA 184
>gi|332293421|ref|YP_004432030.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Krokinobacter diaphorus
4H-3-7-5]
gi|332171507|gb|AEE20762.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Krokinobacter diaphorus
4H-3-7-5]
Length = 184
Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats.
Identities = 69/175 (39%), Positives = 104/175 (59%), Gaps = 3/175 (1%)
Query: 4 NPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ I + FED RG+F ++Y+S+ + G +FVQDN S S G +RGLHFQ
Sbjct: 9 KDLIICTPKVFEDDRGYFYESYNSEAFERFAGFSPLFVQDNQSKSS-FGVLRGLHFQIGK 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ+KLVR I G++ D+ VD+R+ PTYG ++E+S N Q+++P G AHGF+TL
Sbjct: 68 HAQSKLVRVIEGKVLDVVVDLRKEEPTYGKSFAIELSGANKKQLFVPKGMAHGFITLSDT 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
YK FY + + G+A+ D S+ I W LL+ +S KD P L+++ +
Sbjct: 128 AIFAYKCDAFYDQKSERGLAYNDVSLKIDW-LLNEHEFLLSPKDLENPMLSELKN 181
>gi|7688729|gb|AAF67516.1|AF170880_23 NovW [Streptomyces caeruleus]
Length = 207
Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats.
Identities = 56/176 (31%), Positives = 78/176 (44%), Gaps = 5/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I V + + D RG F Y E G Q N S S G +RG+HF
Sbjct: 6 LGIEGVWEITPEQRADPRGVFLDWYHVDRFAEAIGRPLRLAQANLSVSVR-GVVRGIHFV 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G +FD+ VD+R SPTYGCW + + +Y+ G HGF +
Sbjct: 65 DVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAI 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ Y + Y + GV D + I WP T P +S +DQ+ L +
Sbjct: 125 SDEATLCYLSSGTYDPATEHGVHPLDPELAIDWP---TGTPLLSPRDQDALLLAEA 177
>gi|313886441|ref|ZP_07820160.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas asaccharolytica
PR426713P-I]
gi|312924122|gb|EFR34912.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas asaccharolytica
PR426713P-I]
Length = 188
Score = 220 bits (562), Expect = 7e-56, Method: Composition-based stats.
Identities = 63/175 (36%), Positives = 96/175 (54%), Gaps = 3/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V +++ + D+RG+F++TY + +VQ+N S S G +RGLH QR
Sbjct: 9 DLAGVYLIEPDCYGDARGYFAETYRTADFAATVSPRPWVQENESSSVR-GVLRGLHLQRG 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+QAKLVRC+ G I D+ VD+RR+S TYG W S +S N Q+YIP FAHGF+ L
Sbjct: 68 EASQAKLVRCVVGEIMDLIVDLRRDSDTYGQWRSYHLSETNHRQLYIPREFAHGFLVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP--LLDTILPSVSEKDQNLPFLNQ 174
+ +YKV + Y+ E + + + D + I W + +S+KD L
Sbjct: 128 QAKFLYKVDNGYAPESELCIRYDDPQLAIPWESWGIAPEELILSDKDLRGISLAD 182
>gi|219670180|ref|YP_002460615.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfitobacterium hafniense
DCB-2]
gi|219540440|gb|ACL22179.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfitobacterium hafniense
DCB-2]
Length = 178
Score = 220 bits (562), Expect = 7e-56, Method: Composition-based stats.
Identities = 65/168 (38%), Positives = 101/168 (60%), Gaps = 2/168 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I ++K F D RG FS+ + + L+ GL Q N S + + GT+RGLH Q
Sbjct: 7 KIAGAYLVKREPFADERGTFSRLFCRRELEAAGLCGEISQMNLSTNRNKGTLRGLHSQSG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
A+ KLV C+ G +FD+ VD+R +SPTY WV +SA NG+ +Y+P G AHG++T+
Sbjct: 67 NAAEDKLVTCVQGEVFDVCVDVREDSPTYLQWVGETLSAENGMGLYVPKGCAHGYLTMTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
N +V+Y VT++Y+ + + G + D + +I WP++ +SEKD+N
Sbjct: 127 NAQVLYLVTEYYTPDTEVGYRFDDSAFEIAWPIMPPY--IMSEKDKNW 172
>gi|226944850|ref|YP_002799923.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Azotobacter vinelandii DJ]
gi|226719777|gb|ACO78948.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Azotobacter vinelandii DJ]
Length = 186
Score = 220 bits (562), Expect = 7e-56, Method: Composition-based stats.
Identities = 65/180 (36%), Positives = 108/180 (60%), Gaps = 6/180 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + +++++ R+F DSRG+ ++ + ++ L G Q NH+F+ GT+RG+HFQR
Sbjct: 9 LPLAGLKLVERRRFGDSRGFLARLFCAEELAATGWLQPIAQINHTFTTWRGTVRGMHFQR 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+A+AKLV C+ G ++D+AVD+R SPT+ W + +SA+N + IP GFAHGF TL
Sbjct: 69 PPHAEAKLVTCLQGEVWDVAVDLRAGSPTFLHWHAERLSADNARALLIPEGFAHGFQTLT 128
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
++Y + Y+ + G+ QD+ + I WPL + +S +D P ++ FE
Sbjct: 129 NGAALLYCHSAAYAPGAEGGLHPQDERLGIAWPLE---IRELSVRDAMHPM---VEGAFE 182
>gi|237743314|ref|ZP_04573795.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 7_1]
gi|229433093|gb|EEO43305.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 7_1]
Length = 164
Score = 220 bits (562), Expect = 7e-56, Method: Composition-based stats.
Identities = 68/159 (42%), Positives = 102/159 (64%), Gaps = 5/159 (3%)
Query: 22 SQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAV 81
++Y+ KELG++++FVQDNHS S G +RGLHFQ+ Y+QAKLVR + G + DIA+
Sbjct: 1 MESYNYNTFKELGIENIFVQDNHSKSSK-GVLRGLHFQKGEYSQAKLVRVLKGAVLDIAI 59
Query: 82 DIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGV 141
D+R+NS T+G +V++E+S N +IP FAHGF+TLE NTE YK +FY+ + ++G+
Sbjct: 60 DLRKNSKTFGKYVTVELSEKNKKMFFIPRNFAHGFLTLEDNTEFFYKCDNFYNPKSEAGI 119
Query: 142 AWQDKSIDITWPLL----DTILPSVSEKDQNLPFLNQID 176
W DK ++I W + +SEKD+ +
Sbjct: 120 MWNDKDLNIEWNFKKYGINENELIISEKDKKNMSFKEYK 158
>gi|85860475|ref|YP_462677.1| CDP-4-dehydro-6-deoxy-D-glucose 3-epimerase [Syntrophus
aciditrophicus SB]
gi|85723566|gb|ABC78509.1| CDP-4-dehydro-6-deoxy-D-glucose 3-epimerase [Syntrophus
aciditrophicus SB]
Length = 201
Score = 220 bits (562), Expect = 8e-56, Method: Composition-based stats.
Identities = 66/184 (35%), Positives = 110/184 (59%), Gaps = 8/184 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I++ + EDSRG+F + + ++ + GL Q NH+++ + GT+RGLHFQ PP
Sbjct: 26 IEGLWIVQRKPIEDSRGFFCRFFCAEEFQTAGLNRPIAQINHTYTVNKGTVRGLHFQHPP 85
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+A+ K+V C+ G ++D+AVDIR++SPT+ W +S N +IP GFAHGF L N
Sbjct: 86 HAEIKIVSCLQGEVYDVAVDIRKDSPTFLRWHGEILSVANQKSFFIPEGFAHGFQALTEN 145
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
E++Y ++ + + + G+ +D I I WP+ + +S++D PF+N ++
Sbjct: 146 CELLYLHSEAFHPQAEGGLHVEDPKIGIAWPI---AVKELSQRDCAYPFIND-----DFK 197
Query: 183 GLPL 186
GL L
Sbjct: 198 GLSL 201
>gi|328954210|ref|YP_004371544.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfobacca acetoxidans DSM
11109]
gi|328454534|gb|AEB10363.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfobacca acetoxidans DSM
11109]
Length = 185
Score = 220 bits (561), Expect = 9e-56, Method: Composition-based stats.
Identities = 59/177 (33%), Positives = 96/177 (54%), Gaps = 5/177 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ +++++ R F D RG+F Y + + G++ FVQD+ S+S G +RGLH+Q
Sbjct: 7 DLPEIKLIEPRVFTDRRGYFFDIYQALGYSDHGIEARFVQDSLSYSLH-GVVRGLHYQLR 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KL+ + G + D+ VDIR S + W +SA+N Q+++P GFAHGF +
Sbjct: 66 -RPQGKLITVLQGEVIDVVVDIRLGSKNFARWTKNLLSADNHRQLFVPPGFAHGFTVISE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
++YK TD+Y + G+ W D + I WP+ +S+KD LP L +
Sbjct: 125 AAAILYKCTDYYDPLDEYGILWNDSHLGIDWPVT---AHILSDKDARLPLLRDVPDN 178
>gi|293604975|ref|ZP_06687372.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Achromobacter piechaudii ATCC
43553]
gi|292816803|gb|EFF75887.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Achromobacter piechaudii ATCC
43553]
Length = 185
Score = 220 bits (561), Expect = 9e-56, Method: Composition-based stats.
Identities = 65/171 (38%), Positives = 104/171 (60%), Gaps = 3/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ ++I++ D RG+ ++ + L+ G Q NH+++ GTIRG+H+Q PP
Sbjct: 10 LAGLKIVERHPRGDDRGFLARLFDGADLRACGWDAAIEQVNHTYTAQAGTIRGMHYQLPP 69
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+A+ KLV CI G ++D+AVDIR+ SPT+ W + +SA+NG + IP GFAHGF TL +
Sbjct: 70 HAEIKLVSCIRGAVWDVAVDIRQGSPTFLQWHAERLSADNGRALLIPRGFAHGFQTLTDD 129
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
E++Y + Y+ + ++ + +QD + I WPL L VS +DQ P L+
Sbjct: 130 VEMLYCHSAPYAPQAEAALHFQDARLGIAWPLP---LTQVSPRDQQHPRLD 177
>gi|225686245|ref|YP_002734217.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella melitensis ATCC
23457]
gi|256043333|ref|ZP_05446268.1| dTDP-4-dehydrorhamnose 3,5-epimerase / dTDP-4-dehydrorhamnose
reductase [Brucella melitensis bv. 1 str. Rev.1]
gi|256111660|ref|ZP_05452650.1| dTDP-4-dehydrorhamnose 3,5-epimerase / dTDP-4-dehydrorhamnose
reductase [Brucella melitensis bv. 3 str. Ether]
gi|225642350|gb|ACO02263.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella melitensis ATCC
23457]
gi|326410597|gb|ADZ67661.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella melitensis M28]
gi|326553889|gb|ADZ88528.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella melitensis M5-90]
Length = 163
Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 102/158 (64%), Gaps = 3/158 (1%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
+D RGWF++ Y E L+ F Q + SFS + GT+RGLH+Q P+++ KLV C+ G
Sbjct: 9 KDERGWFARVYCEAAFAERKLETHFPQHSLSFSREKGTLRGLHYQNEPHSETKLVTCLQG 68
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
++D+ VD+R +SPTY W +E+SA NG+Q+YIP G AHGF TL + + Y ++ Y+
Sbjct: 69 IVWDVLVDLRPHSPTYRRWAGVELSAENGVQLYIPEGCAHGFQTLTDDVLIRYMISKPYA 128
Query: 135 VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+H +G+ + D ++DI WP ++ +S+KD PFL
Sbjct: 129 PDHAAGIRYDDPALDIPWPEKPSV---ISQKDLGWPFL 163
>gi|228469727|ref|ZP_04054695.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas uenonis 60-3]
gi|228308746|gb|EEK17472.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas uenonis 60-3]
Length = 188
Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats.
Identities = 63/175 (36%), Positives = 97/175 (55%), Gaps = 3/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V +++ + D+RG+F++TY + +VQ+N S S G +RGLH QR
Sbjct: 9 DLAGVYLIEPDCYGDARGYFAETYRTADFAATVAPRPWVQENESSSVR-GVLRGLHLQRG 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+QAKLVRC+ G I D+ VD+RR+S TYG W S +S N Q+YIP FAHGF+ L
Sbjct: 68 EASQAKLVRCVVGEIIDLIVDLRRDSDTYGQWRSYHLSEQNHRQLYIPREFAHGFLVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP--LLDTILPSVSEKDQNLPFLNQ 174
+ +YKV + Y+ E + + + D + I W + + +S+KD L
Sbjct: 128 QAKFLYKVDNGYAPESELCIRYDDPQLAIPWESWGISSEELILSDKDLRGISLAD 182
>gi|110597157|ref|ZP_01385446.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium ferrooxidans DSM
13031]
gi|110341348|gb|EAT59813.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chlorobium ferrooxidans DSM
13031]
Length = 177
Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats.
Identities = 61/173 (35%), Positives = 95/173 (54%), Gaps = 5/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ + +++ R + D RG+F +TY ++ G+ D F+QDN S S G +RG+HFQ
Sbjct: 8 LDGLYVIEPRCYTDDRGFFLETYQETRYRKAGIADKFLQDNQSRSVK-GVLRGMHFQVK- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
QA+L+ + G I+D+ VDIR S T+G W E+S QIY+ GFAHGF
Sbjct: 66 RPQAQLLTVLRGHIYDVCVDIRPASSTFGQWFGAELSDIGPRQIYMSPGFAHGFYVFSDW 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
++ YKVT Y + G+ W D + I WP+ P ++ +D + P L +
Sbjct: 126 ADLHYKVTCEYDAGDEGGLFWNDPDVGIKWPM---NSPIITPRDASYPRLKDL 175
>gi|118469056|ref|YP_885893.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium smegmatis str.
MC2 155]
gi|310947299|sp|A0QSK5|RMLC_MYCS2 RecName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; AltName:
Full=Thymidine diphospho-4-keto-rhamnose 3,5-epimerase;
AltName: Full=dTDP-4-keto-6-deoxyglucose 3,5-epimerase;
AltName: Full=dTDP-6-deoxy-D-xylo-4-hexulose
3,5-epimerase; AltName: Full=dTDP-L-rhamnose synthase
gi|118170343|gb|ABK71239.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium smegmatis str.
MC2 155]
Length = 201
Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 6/178 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I + DSRG F + ++ E G Q Q N S S G +RG+HF
Sbjct: 6 LSIAGAWEITPVLRTDSRGLFFEWFTDAGFTEFAGHQFDMRQANCSVSAR-GVLRGVHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P +QAK V C+ G +FD+ VDIR SPT+G W ++ + + IYI G H F+ L
Sbjct: 65 QVPPSQAKYVTCVRGAVFDVVVDIRVGSPTFGQWDAVLLDDKDRRSIYISEGLGHAFLAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ ++ V+Y + Y+ + + V D I WP + + +S++D P L + +
Sbjct: 125 DDDSTVMYLCSAPYAPQREHTVRPTD--FGIEWPEVPEL--ILSDRDAQAPSLAEAQA 178
>gi|169630860|ref|YP_001704509.1| dTDP-4-dehydrorhamnose 3,5-epimerase RmlC [Mycobacterium abscessus
ATCC 19977]
gi|169242827|emb|CAM63855.1| DTDP-4-dehydrorhamnose 3,5-epimerase RmlC [Mycobacterium abscessus]
Length = 205
Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats.
Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ + + DSRG F + + L E G Q N S S G++RG+HF
Sbjct: 6 LSVPGSFEITPVQHHDSRGVFLELFKGPALAEAIGHPFELQQANCSVSA-AGSLRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G ++D+ VDIR SPT+G W ++ + + +Y+P G HGF+ L
Sbjct: 65 DVPPGQAKYVTCLTGSVYDVVVDIRVGSPTFGAWDAVLLDPRDRRAVYVPEGVGHGFLAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSV----SEKDQNLPFLNQI 175
E ++ V+Y + Y+ + G+ D ++ I WP + SEKD P L
Sbjct: 125 EDDSTVVYLCSAGYAPGREHGIDPLDPTVGIQWPTRRPDGTELSLLVSEKDGAAPSLLDA 184
>gi|194292861|ref|YP_002008768.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Cupriavidus taiwanensis LMG
19424]
gi|193226765|emb|CAQ72716.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Cupriavidus taiwanensis LMG
19424]
Length = 184
Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats.
Identities = 65/172 (37%), Positives = 93/172 (54%), Gaps = 2/172 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I ++ D RG F++ + GL FVQ + S + G +RG+HFQ
Sbjct: 8 IAGAWLIDPEPLHDERGHFARIVCQATFERHGLNARFVQQSVSRNTRAGILRGMHFQAGA 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
A+ KLVR AG + D+ +D+RR+S TY W + E+SA + +YIP G AHGF TL
Sbjct: 68 AAEEKLVRATAGVVHDVILDLRRDSATYLQWQAFELSAQSQRAVYIPKGVAHGFQTLTAL 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+EV Y++T YS +H G+ W D I I WP + L +S +D LP L +
Sbjct: 128 SEVFYQMTVPYSPQHSQGLRWDDPDIGIAWPDCEDRL--ISARDLALPTLAE 177
>gi|288941651|ref|YP_003443891.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Allochromatium vinosum DSM
180]
gi|288897023|gb|ADC62859.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Allochromatium vinosum DSM
180]
Length = 187
Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats.
Identities = 65/184 (35%), Positives = 104/184 (56%), Gaps = 8/184 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V +++ + D RGWF + + ++ L+ + VQ N S + GT+RGLH+Q PP
Sbjct: 12 LAGVVVVERQPIADERGWFERLFCARELESVTHGQPIVQINRSLTHRRGTVRGLHYQHPP 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+A+ K+V C+ G IFD+AVD+R SPT+ W +SA +G + IP G AHGF TL +
Sbjct: 72 HAETKIVTCLRGEIFDVAVDLRAGSPTFLHWHGERLSAADGRMLVIPEGCAHGFQTLSDD 131
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
E+ Y T Y +SG+ +D +D+ WP + +S +D+ P L+ +++
Sbjct: 132 AELFYLNTAEYVPASESGLHPEDPRLDVRWPGP---ITQLSSRDRGHPPLDP-----QFE 183
Query: 183 GLPL 186
GL L
Sbjct: 184 GLSL 187
>gi|325002423|ref|ZP_08123535.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudonocardia sp. P1]
Length = 188
Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats.
Identities = 58/179 (32%), Positives = 102/179 (56%), Gaps = 8/179 (4%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M+I ++ ++ ED RG+F++ + + + GL Q N S++ + GT+RG
Sbjct: 1 MDIHPTPLPGSALIDLKRLEDDRGFFARAFCEQEFLDAGLDPTITQCNLSYNHEAGTLRG 60
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
H+Q P A+ K++RC+ G IFD+ VD+R +S TY W E+S +N +Y+P FAH
Sbjct: 61 FHYQLEPNAEVKVIRCVRGAIFDVIVDLRPDSDTYLQWFGAELSQDNYKAMYVPRNFAHA 120
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
++TL + IY+V+ Y+ + G+ W D +I + WP+ + +S+KD P +++
Sbjct: 121 YLTLTPDATTIYQVSTPYTPGAERGLRWSDPTIGVEWPVE---VAHISDKDAAWPLVSE 176
>gi|170743095|ref|YP_001771750.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium sp. 4-46]
gi|168197369|gb|ACA19316.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium sp. 4-46]
Length = 205
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 63/176 (35%), Positives = 105/176 (59%), Gaps = 3/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+++ V I+ D RG F++ + ++ L E GL Q + S++ GT+RG+HF+ P
Sbjct: 7 DLSGVYIVDIDPRRDERGHFARIFCTQELAERGLIHHIPQISLSYNIKRGTLRGMHFKYP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY++ K VRC+ GRIFD+ VD+R S TY + E+SA NG +YIP AHGF+TLE
Sbjct: 67 PYSETKYVRCVRGRIFDVVVDLRPESRTYLGHLCAELSAENGRCLYIPERCAHGFITLED 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
++EV+Y ++ ++ + + G+ D + I WP+ + +S +D P L +++
Sbjct: 127 DSEVMYMISAPHAPDGEGGLVHDDPRLAIPWPIPVEV---ISRRDAEWPALAEVED 179
>gi|307635121|gb|ADN78402.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geobacter sulfurreducens
KN400]
Length = 186
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 63/169 (37%), Positives = 98/169 (57%), Gaps = 3/169 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+N V ++ ED RG+FS+ + ++ +GL VQ NHSF+ GT+RG+HFQ PP
Sbjct: 11 LNGVYAIRRTVAEDHRGFFSRFFCAEEFTAIGLTAPIVQINHSFTRKMGTVRGMHFQHPP 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ + K+V C+ G +FD+AVD+R S T+ W +++ N ++IP GFAHGF TL +
Sbjct: 71 HTETKIVSCLKGCVFDVAVDLRYGSETFLKWHGEILTSENRKSLFIPEGFAHGFQTLSED 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPF 171
E+IY T Y + + + D I I WPL + +S +D++ P
Sbjct: 131 CELIYLHTSAYDLHSEGALNAIDPQIAIEWPL---AIAEMSNRDRSHPL 176
>gi|260495066|ref|ZP_05815195.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 3_1_33]
gi|260197509|gb|EEW95027.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 3_1_33]
Length = 164
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 68/159 (42%), Positives = 103/159 (64%), Gaps = 5/159 (3%)
Query: 22 SQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAV 81
++Y+ KELG++++FVQDNHS S G +RGLHFQ+ Y+QAKLVR + G + DIA+
Sbjct: 1 MESYNYNTFKELGIENIFVQDNHSKSLK-GVLRGLHFQKGEYSQAKLVRVLKGAVLDIAI 59
Query: 82 DIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGV 141
D+R+NS T+G +V++E+S N +IP FAHGF+TLE NTE+ YK +FY+ + ++G+
Sbjct: 60 DLRKNSKTFGKYVTVELSEKNKKMFFIPRNFAHGFLTLEDNTEIFYKCDNFYNPKSEAGI 119
Query: 142 AWQDKSIDITWPLL----DTILPSVSEKDQNLPFLNQID 176
W DK ++I W + +SEKD+ +
Sbjct: 120 MWNDKDLNIEWNFKKYGINENELIISEKDKKNMSFKEYK 158
>gi|325954731|ref|YP_004238391.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Weeksella virosa DSM 16922]
gi|323437349|gb|ADX67813.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Weeksella virosa DSM 16922]
Length = 185
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 66/176 (37%), Positives = 101/176 (57%), Gaps = 3/176 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ I++ ++D RG+F ++++ +L E LG + FVQDN S S G +RGLH Q+
Sbjct: 8 LKGCFIIEPTVYQDKRGYFFESFNENILNEILGFRPHFVQDNQSQS-TYGVVRGLHLQQG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQAKLVR + G++ D+ VD+R+NS TYG S+E+S+ N Q++IP GF HGF L
Sbjct: 67 EHAQAKLVRVLEGKVLDVVVDVRKNSTTYGKSFSIELSSENNRQLFIPKGFLHGFSVLSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
YK FY + ++GV D + I W + + +SEKDQ ++
Sbjct: 127 RATFFYKCDQFYHKDSENGVYPLDIDLGIDWQIPTEDM-ILSEKDQAAQRFLDFNN 181
>gi|288921330|ref|ZP_06415612.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EUN1f]
gi|288347304|gb|EFC81599.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EUN1f]
Length = 185
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 58/170 (34%), Positives = 98/170 (57%), Gaps = 3/170 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V I+ F D+RG F++T+ + GL+ Q + +++ GT+RG+H+ P
Sbjct: 8 VDGVTIVDVEAFTDARGLFARTFCADEFAAAGLEVSVAQCSVAYNRLAGTVRGMHWAGEP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ KLVRC G + D+ VD R SPTY V++E++A+N ++I G AHG+ TL +
Sbjct: 68 VRETKLVRCTRGALLDVVVDTRPGSPTYLEHVAVELTADNHRALFISAGLAHGYQTLVDD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
TE Y++ ++ HD G+ + D + I WPL ++ +S+KD+ P L
Sbjct: 128 TEATYQMNVPFTPGHDRGLRFDDPRLGIAWPLPVSV---ISDKDRAWPLL 174
>gi|170586408|ref|XP_001897971.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brugia malayi]
gi|158594366|gb|EDP32950.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Brugia malayi]
Length = 188
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 61/173 (35%), Positives = 95/173 (54%), Gaps = 5/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ +++++ + F D+RG+F ++Y+ L LG + F QDNHS+S CG +RGLH Q
Sbjct: 13 QIDGLKLIRPKLFPDTRGYFVESYNEYELGALGFSEKFKQDNHSYS-KCGVLRGLHAQ-- 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
KLV I+G I+D+AVDIR S T+G W + + +IP GF HGF L
Sbjct: 70 -PGMGKLVSVISGEIYDVAVDIRSMSKTFGKWYGVVLDEKTRTAFWIPDGFLHGFYVLSE 128
Query: 122 N-TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
V YK T Y+ + + GV D + I W + ++ +S++D++ L
Sbjct: 129 EGAHVTYKCTAIYNEQVEFGVNPFDPELAIDWHISNSYKLIISDRDRSHQNLK 181
>gi|311694791|gb|ADP97664.1| dTDP-4-dehydrorhamnose 3,5-epimerase [marine bacterium HP15]
Length = 174
Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats.
Identities = 58/168 (34%), Positives = 99/168 (58%), Gaps = 3/168 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ ++ ++ D RG+F + + + ++E+GL Q N S GT+RGLH+Q
Sbjct: 7 EISGSYLIDVKRIGDDRGFFGRLWCEREMEEMGLVSAIKQSNIGVSPLKGTLRGLHYQTA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ + K++RC G I+D+ VD+R +SPT+ W ++E++A N +Y+P G A G+ TL
Sbjct: 67 PHQEVKIIRCPRGAIYDVIVDLRPDSPTFKKWFAVELTAENSRMLYVPEGCATGYQTLVD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
+TE+ Y ++FY E +GV D + I WPL + ++S+ D+N
Sbjct: 127 DTEIYYHTSEFYHPESATGVRHDDPTFGIEWPLP---IAAISDNDKNW 171
>gi|305665782|ref|YP_003862069.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Maribacter sp. HTCC2170]
gi|88710546|gb|EAR02778.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Maribacter sp. HTCC2170]
Length = 179
Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats.
Identities = 61/173 (35%), Positives = 94/173 (54%), Gaps = 3/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I +L+ FED RG F +++ + L+ LG + FVQDN S S +RGLHFQ
Sbjct: 7 KIKDCLLLEPNVFEDERGSFIESFKKQNLENALGFKIDFVQDNISIS-KKWVLRGLHFQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Y+QAKL+ + GR+ D+ VD+R++S TYG +E+ + + ++IP G AHGF++L
Sbjct: 66 NDYSQAKLINVVRGRVLDVVVDLRKDSATYGQHFKIELDSIDRKLLFIPKGMAHGFLSLA 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+T YK +Y+ + G+ + D + I W +SEKD L
Sbjct: 126 DDTIFSYKCDAYYNQAAEGGIFYNDPDLAIDW-EYPGNRFILSEKDLQLTPFK 177
>gi|300728512|ref|ZP_07061871.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella bryantii B14]
gi|299774230|gb|EFI70863.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella bryantii B14]
Length = 185
Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats.
Identities = 72/174 (41%), Positives = 104/174 (59%), Gaps = 3/174 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI +IL + F D+RG F + Y+ L + G++DVFVQDN S S G +RG+H Q
Sbjct: 7 NIKDAKILIPQLFTDTRGDFMEFYNENTLNKEGIKDVFVQDNISSSIK-GVLRGVHTQLK 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y QAK+V C+ G I+D+ VD R +SPT+G W ++A+N Q+Y+P G AHG+ TL
Sbjct: 66 -YPQAKIVSCLKGIIWDVIVDCRIDSPTFGNWYGEFLTADNHKQLYVPQGVAHGYYTLSE 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
++ KVT Y+ + G W D+SI I WPL P ++EKD+N + +
Sbjct: 125 -ATILMKVTTHYTPGDEIGFNWDDESIGIDWPLDCESEPILAEKDKNWGSFDDM 177
>gi|218671520|ref|ZP_03521190.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhizobium etli GR56]
Length = 180
Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats.
Identities = 66/172 (38%), Positives = 101/172 (58%), Gaps = 3/172 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++ D RG F++T+ ++ GL V+ Q N S + GT+RG+H+Q P
Sbjct: 8 VAGAFVVEVEVRADDRGMFARTFCAESFTAHGLASVYPQCNLSQNHRRGTLRGMHYQADP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AKLVR + GR+FD+A+D+RR SPTY W S+E+ A + YIP G AHGF+TLE +
Sbjct: 68 KPEAKLVRAVRGRVFDVALDLRRESPTYLKWASVELDATSRNAFYIPAGCAHGFLTLEDD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E+ Y++++ Y E GV W D + I WP ++ +SE+D L Q
Sbjct: 128 CELFYQMSEIYVPELARGVRWDDPAFSIAWPFTPSV---ISERDVALASYRQ 176
>gi|7329193|gb|AAF59933.1| dTDP-4-keto-6-deoxyglucose 3,5-epimerase [Streptomyces
antibioticus]
Length = 202
Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats.
Identities = 56/176 (31%), Positives = 85/176 (48%), Gaps = 4/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++++ + D RG F + + + +E +G Q N S S G +RG+HF
Sbjct: 4 LDVDGAWLYTPEIMRDERGEFLEWFRGRTFQEKIGHPLSLAQANCSVS-RKGVLRGIHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C +G + D+ VD+RR SPT+G W ++ + A +Y+ G H FM L
Sbjct: 63 DAPPGQAKYVTCASGTVLDVVVDVRRGSPTFGRWAAVRLDAARHQGLYLAEGLGHAFMAL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ V+Y + Y E + V D +I I WP I +S KD + P L Q
Sbjct: 123 TDDATVVYLCSQPYVAEAERAVDPLDPAIGIEWPT--DIDIVLSAKDTHAPSLAQA 176
>gi|168702105|ref|ZP_02734382.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gemmata obscuriglobus UQM
2246]
Length = 177
Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats.
Identities = 63/171 (36%), Positives = 96/171 (56%), Gaps = 2/171 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V +++ D RG F++TY ++ GL + Q N SF+ GT+RG+H+Q
Sbjct: 7 ELPGVFVIEPEPTGDDRGLFARTYCAEEFARRGLCTQWAQCNVSFNTRAGTLRGMHWQAA 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ + KLVRC AG D+ D R +SPTY WV++E++A N +YIP G+AHGF T
Sbjct: 67 PHEEVKLVRCTAGAALDVVADARPDSPTYRKWVAVELTAANRRAVYIPGGYAHGFQTFAD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
TE+ Y+++ FY G W D ++ I WP D ++ +D + P L
Sbjct: 127 GTELFYQMSAFYVPGAARGARWDDPALGIAWPPCDRR--VIAPRDLSFPDL 175
>gi|300789778|ref|YP_003770069.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Amycolatopsis mediterranei
U32]
gi|299799292|gb|ADJ49667.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Amycolatopsis mediterranei
U32]
Length = 201
Score = 217 bits (554), Expect = 7e-55, Method: Composition-based stats.
Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 4/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ R F D RG F + + + +G Q NHS S GTIRG+HF
Sbjct: 6 LSVPDAYEFSPRAFPDDRGLFVAPFQEDVFRDAVGHSLRLGQANHSVS-RRGTIRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C G + D+ VDIR SPT+G W ++ + + +Y+ G HGF+ L
Sbjct: 65 DTPPGQAKYVYCPRGSLLDVVVDIRVGSPTFGRWDAVVLDSREFRAMYLAEGLGHGFVAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +T + Y ++ Y+ + G+ D +D+ WP I +S+KD+ P L +
Sbjct: 125 EDDTVMTYICSEPYNPAGEHGITPLDPVLDLPWPA--DIAQVLSDKDRIAPTLAEA 178
>gi|134102850|ref|YP_001108511.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Saccharopolyspora erythraea
NRRL 2338]
gi|291008758|ref|ZP_06566731.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Saccharopolyspora erythraea
NRRL 2338]
gi|133915473|emb|CAM05586.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Saccharopolyspora erythraea
NRRL 2338]
Length = 201
Score = 217 bits (553), Expect = 8e-55, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 80/178 (44%), Gaps = 3/178 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I R F D RG F Y E G Q NHS S +RG+HF
Sbjct: 6 LEITGAFEFSPRSFPDHRGLFVAPYQEAAFVEATGHALRVAQTNHSVSAR-NVVRGVHFS 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK + C G + D +DIR SPT+G W ++ + + +Y+ G H F L
Sbjct: 65 DVPPGQAKYIYCAQGAMLDFVIDIRVGSPTFGRWEAVRLDSAEYRAVYLAEGLGHAFAAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+T V Y + Y+ + G+ D + + W LD P +S+KD++ P L + +
Sbjct: 125 TDDTAVAYFCSTPYNPSAEHGINPLDPDLGLPWGDLDG-EPILSDKDRDAPGLAEAAA 181
>gi|262200610|ref|YP_003271818.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gordonia bronchialis DSM
43247]
gi|262083957|gb|ACY19925.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gordonia bronchialis DSM
43247]
Length = 206
Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats.
Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 6/180 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I+ L + D+RG F++ + + LL E +G + Q N S S G +RG+HF
Sbjct: 6 LSIDGAWELTPVQHGDARGLFAEAFKADLLAEVIGHRFELAQVNLSVSA-AGVLRGVHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C G D+ +DIR SPT+G ++ I + +Y+ G H L
Sbjct: 65 DVPPGQAKYVSCARGAFLDVIIDIRVGSPTFGAHDTVLIDDADRRAVYLSEGLGHAICAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQI 175
E N+ V Y + Y+ + G+ D + I WP + +S KD P L +
Sbjct: 125 EDNSTVTYLCSAGYNPSAEHGINPLDPDLGIDWPTTGRDGTPLQYELSAKDTAAPGLFEA 184
>gi|258651651|ref|YP_003200807.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nakamurella multipartita DSM
44233]
gi|258554876|gb|ACV77818.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nakamurella multipartita DSM
44233]
Length = 200
Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats.
Identities = 54/176 (30%), Positives = 83/176 (47%), Gaps = 4/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + + D RG F + + + L+E G Q N S S GT+RG+HF
Sbjct: 6 LQVPGAFEFTPVQHGDPRGVFLEWFKVERLEEAVGHPLTLAQANLSVS-RAGTLRGVHFS 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C G + D VD+R SPT+G + + + +YI G H F+ L
Sbjct: 65 DVPPGQAKYVTCPRGAVLDYMVDLRVGSPTFGVCDVVRLDGEHRRAVYISEGLGHAFVAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E NT + Y + YS + GV D ++++ PL + + +S+KD P L +
Sbjct: 125 EDNTTLTYLCSTGYSPGREHGVNPLDPALNL--PLPEGVDFLLSDKDSAAPTLAEA 178
>gi|163792827|ref|ZP_02186804.1| CDP-4-dehydro-6-deoxy-D-glucose 3-epimerase [alpha proteobacterium
BAL199]
gi|159182532|gb|EDP67041.1| CDP-4-dehydro-6-deoxy-D-glucose 3-epimerase [alpha proteobacterium
BAL199]
Length = 180
Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats.
Identities = 64/172 (37%), Positives = 98/172 (56%), Gaps = 3/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ R+ D+RG+F +++ ++ L G Q N S + GT+RGLHFQ P
Sbjct: 11 GIAGLHVVVPRRLADTRGFFERSFCAQELTAAGWNTPVAQINQSVTEAAGTVRGLHFQHP 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+A+ KLVRC G +FD+AVD+R +SPTY W + +S +G + IP G AHGF TL
Sbjct: 71 PHAEMKLVRCTQGSVFDVAVDLRPDSPTYRRWHAETLSDADGRGLLIPPGLAHGFQTLTT 130
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
++Y + + E G+ D ++DI WP + +S++D LPFL
Sbjct: 131 RCRMLYVHSVAFHPESQGGIHPLDPTLDIAWP---EPIELLSDRDAALPFLE 179
>gi|117927776|ref|YP_872327.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidothermus cellulolyticus
11B]
gi|117648239|gb|ABK52341.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidothermus cellulolyticus
11B]
Length = 216
Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats.
Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 4/167 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + + R++ D RG F + + + +L +G Q Q N S S GTIRG+HF
Sbjct: 21 LAVPDAWVFTPRQYPDERGVFLEWFRADVLSRVIGHQMAIAQSNQSVS-RRGTIRGVHFA 79
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V C G + D+ VDIR SPT+G ++ + + +YI G H FM L
Sbjct: 80 DVPPSQAKYVYCARGAVLDVVVDIRVGSPTFGRLDTVRLDDVDRRAVYISEGLGHAFMAL 139
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ V Y + Y+ E + GV D+ + I WP I P +S KD
Sbjct: 140 TDDAVVTYLCSTGYAPEREHGVNPLDEELGIPWPR--DIEPILSAKD 184
>gi|269219067|ref|ZP_06162921.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinomyces sp. oral taxon
848 str. F0332]
gi|269211214|gb|EEZ77554.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinomyces sp. oral taxon
848 str. F0332]
Length = 203
Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats.
Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + ++F D RG F + Y S + +G + Q N S S GT+RG+HF
Sbjct: 6 LKIPGAWEITPKQFPDDRGVFLEAYKSSAFEKAVGHRLDLRQANVSVS-KAGTVRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V C G + D A+DIR SPT+G W S+ + + IY+ G H F+ L
Sbjct: 65 DVPPSQAKYVVCPRGAVLDFAIDIRVGSPTFGQWDSVLLDDVDRRAIYLSEGLGHAFIAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQI 175
E ++ V+Y + Y+ + GV+ + + +P + +SEKD P L +
Sbjct: 125 EDDSTVMYMCSAEYAPGREHGVSPVCPEVALDFPKTGRDGSPLELLLSEKDTAAPNLAEA 184
>gi|302607777|emb|CBW45689.1| putative dTDP-4-deoxyglucose 3,5-epimerase [Streptomyces
pristinaespiralis]
Length = 212
Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats.
Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 7/197 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + R D RG F + +G Q NHS S G +RG+HF
Sbjct: 19 LAVAGAYEFTPRVHRDERGLFVSPLQEEAFVAAVGRPFTVAQTNHSRSAR-GVMRGVHFT 77
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C GR D+ VDIR SPT+G W ++E+ + +Y+P G H F++L
Sbjct: 78 TTPPGQAKYVHCARGRAMDVVVDIRVGSPTFGAWDTVEMDTESFRAVYLPEGVGHAFLSL 137
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
E +T + Y V+ Y + + + D ++ + WP + ++S +D L + +
Sbjct: 138 EDDTVMSYLVSTPYRADLEQAIDPLDPALGLPWP--KDMSFTLSRRDTQAVGLAEARAKG 195
Query: 180 ---EYDGLPLLSLNMER 193
Y+ P + +R
Sbjct: 196 MLPRYEDCPAAAAAADR 212
>gi|256856006|emb|CBB12351.1| RmlC protein [Rhodococcus aetherivorans]
Length = 195
Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats.
Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 6/180 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + R+F D RG F + + G Q N S S G +RG+H+
Sbjct: 6 LKIPGAYEITPRQFGDDRGVFYEWFKQPTFTDAAGRALDLAQANCSVSA-AGVLRGIHYA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C AG + D+ VD+R SPT+G W ++ + + I++P G H F +L
Sbjct: 65 DVPPGQAKYVTCPAGAVLDVVVDLRVGSPTFGQWDAVLLDDVDRRAIFLPEGLGHAFCSL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQI 175
+ V+Y + Y+ + + + D I I WP + +S+KD+ P L
Sbjct: 125 ADGSTVVYLCSTGYNPDREHEIDPLDPQIGIDWPTTGRDGAPLHHQLSDKDRAAPSLADA 184
>gi|158335345|ref|YP_001516517.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acaryochloris marina
MBIC11017]
gi|158305586|gb|ABW27203.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acaryochloris marina
MBIC11017]
Length = 185
Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats.
Identities = 67/181 (37%), Positives = 93/181 (51%), Gaps = 6/181 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I L+ F+D RG F +T+ ++ L+ F + +S+S +RGLHFQ P
Sbjct: 7 KIPGCFELELNVFKDQRGRFVKTFHEEIFASHQLETHFPEAYYSYSTQ-NVLRGLHFQIP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P K+V C G I D VD+R SPTYG + E+SA G YIP G AHGF +
Sbjct: 66 PKDHTKMVHCAQGEIVDAVVDLRVGSPTYGQFEVFELSAEKGNSAYIPPGLAHGFYIVSE 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
V+Y+V+ Y+ H+ G+ W I WP + P +SEKDQ L +SPF Y
Sbjct: 126 TALVMYQVSTVYAPGHEQGLLWNSAE--IPWPSTN---PIISEKDQGWKTLADYESPFVY 180
Query: 182 D 182
+
Sbjct: 181 E 181
>gi|328545881|ref|YP_004305990.1| dTDP-4-dehydrorhamnose 3,5-epimerase [polymorphum gilvum
SL003B-26A1]
gi|326415621|gb|ADZ72684.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Polymorphum gilvum
SL003B-26A1]
Length = 179
Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats.
Identities = 64/172 (37%), Positives = 97/172 (56%), Gaps = 3/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++PV ++ D RG F++ + ++ + GL Q N S S T+RG+HFQ
Sbjct: 7 ELDPVVEIRLSPRRDDRGAFTRLFCAEEFRAAGLAFALAQSNLSESRHRHTLRGMHFQYR 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
A+ K+V I GRIFD+A+D+R SP++G WV E+SA+ + IP GFAHGF+TLE
Sbjct: 67 EAAETKIVFPITGRIFDVALDLRAGSPSFGRWVGRELSADRRNALVIPKGFAHGFLTLEP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+T V+Y V Y+ + GV W D I WP + +S++D+ P +
Sbjct: 127 DTHVMYLVDAPYNGATEGGVRWDDPQFAIDWPHEPAV---ISDRDRAHPDFS 175
>gi|325002410|ref|ZP_08123522.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudonocardia sp. P1]
Length = 201
Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 4/178 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I+ + + F D RG F+ + + +E G +Q N S S G +RG+H+
Sbjct: 6 LGISGAWLFEPTVFPDPRGRFTAPFQGPVFREALGFDLSVMQSNQSVSSR-GVVRGVHYA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK + AG + D+ VDIR SPT+G + +++ A++ +Y+ G H F +
Sbjct: 65 DVPPGQAKYLYIAAGAVRDVIVDIRVGSPTFGQFEVVDLDADSMRAVYLSEGLGHAFQAM 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
T V Y + Y+ E + G+ D + I W + + P +SEKD+ P L + ++
Sbjct: 125 TDGTVVGYLCSTSYAPEREHGITPIDPQLAIPW--VAGVEPVLSEKDREAPTLAEAEA 180
>gi|581679|emb|CAA55578.1| dTDP-4-keto-6-deoxyglucose 3,5-epimerase [Streptomyces glaucescens]
gi|3256061|emb|CAA07389.1| StrM [Streptomyces glaucescens]
Length = 200
Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 5/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I ++++R F D RG F + + L + LG Q N S S G +RG+HF
Sbjct: 4 LGIEGAWLVESRVFGDERGEFQELFRGGPLSDTLGYVPGVAQVNRSVS-RKGVVRGVHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G + D+ VDIR SP YG W ++ + + +YI G H FM L
Sbjct: 63 DVPPGQAKYVTCLRGAVLDVVVDIRAGSPAYGAWETVRLD-DPRRSVYIEAGLGHAFMAL 121
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ V+Y ++ Y+ E + V D ++ I WP I P +S KD P L +
Sbjct: 122 TDDATVVYLTSEGYAPEREHAVHPLDPALGIAWP--PGIEPVLSAKDSRAPGLEE 174
>gi|330468514|ref|YP_004406257.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Verrucosispora maris
AB-18-032]
gi|328811485|gb|AEB45657.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Verrucosispora maris
AB-18-032]
Length = 204
Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 5/178 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + ++ DSRG F + Y +L +E+G Q N S S +RG+HF
Sbjct: 6 LGIEGAWEITPQQHGDSRGLFLEWYRFDRLAEEVGHPLRLAQGNLSVSAR-HVVRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G + D+ VD+R SPT+G W S+ + + +Y+ G HGF L
Sbjct: 65 DVPPGQAKYVTCVRGAVLDVVVDLRVGSPTFGEWESVRLDDVDRRAVYLAEGLGHGFCAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ + Y + Y+ + V D+ + I WP T P +S +D P L Q+ +
Sbjct: 125 TDDATLSYLCSTTYNPTAEHAVHPLDEELGIEWP---TGTPLLSARDAAAPNLAQVRA 179
>gi|225010349|ref|ZP_03700821.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Flavobacteria bacterium
MS024-3C]
gi|225005828|gb|EEG43778.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Flavobacteria bacterium
MS024-3C]
Length = 180
Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats.
Identities = 70/174 (40%), Positives = 96/174 (55%), Gaps = 3/174 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ + F+D+RG F + ++ GL Q+N S S GTIR LH+Q+
Sbjct: 8 LKGCFEITPNLFKDARGSFFEAFNKAHFYAATGLSFEVAQENQSTSVK-GTIRALHYQKG 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
YAQAKLVR +AG I D+ VD+R SPTYG ++SA N Q+YIP GFAHGF L
Sbjct: 67 AYAQAKLVRVLAGEIIDVVVDLRPGSPTYGIHHRTKLSALNLKQLYIPKGFAHGFSVLTN 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
V+Y Y + + G+ + D S++I W L + P +SEKDQ LP L +
Sbjct: 127 TATVVYACDAPYQKDQEGGIYFADPSLNIDWGLGER-RPLLSEKDQALPLLKDV 179
>gi|304394676|ref|ZP_07376595.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ahrensia sp. R2A130]
gi|303293337|gb|EFL87718.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ahrensia sp. R2A130]
Length = 176
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 60/172 (34%), Positives = 100/172 (58%), Gaps = 3/172 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++++ + +++ R D RG F++++ E GL + Q NHSF+ GT+RG+H+Q
Sbjct: 6 LSLDGLVLIEQRLMSDERGAFARSFCEDTFHEAGLHADYPQHNHSFNTRAGTVRGMHYQH 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ + KLV+ + G I D+ VDIR+ S T+G +++E+S + +YIP GFAHGF TL
Sbjct: 66 APHEEVKLVQVLRGAIADVVVDIRKGSETFGQSLTVELSQDEATALYIPAGFAHGFQTLA 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+T V Y + + + ++G W D + DI WP + +S+KD P
Sbjct: 126 DDTLVTYLMGSRFVPDANTGFRWNDPAFDIFWPRE---ISVISDKDLAYPNF 174
>gi|297196533|ref|ZP_06913931.1| dTDP-4-deoxyglucose 3,5-epimerase [Streptomyces pristinaespiralis
ATCC 25486]
gi|297153260|gb|EFH32244.1| dTDP-4-deoxyglucose 3,5-epimerase [Streptomyces pristinaespiralis
ATCC 25486]
Length = 205
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 7/189 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + R D RG F + +G Q NHS S G +RG+HF
Sbjct: 19 LAVAGAYEFTPRVHRDERGLFVSPLQEEAFVAAVGRPFTVAQTNHSRSAR-GVMRGVHFT 77
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C GR D+ VDIR SPT+G W ++E+ + +Y+P G H F++L
Sbjct: 78 TTPPGQAKYVHCARGRAMDVVVDIRVGSPTFGAWDTVEMDTESFRAVYLPEGVGHAFLSL 137
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
E +T + Y V+ Y + + + D ++ + WP + ++S +D L + +
Sbjct: 138 EDDTVMSYLVSTPYRADLEQAIDPLDPALGLPWP--KDMSFTLSRRDTQAVGLAEARAKG 195
Query: 180 ---EYDGLP 185
Y+ P
Sbjct: 196 MLPRYEDCP 204
>gi|182439720|ref|YP_001827439.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|326780384|ref|ZP_08239649.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces cf. griseus
XylebKG-1]
gi|267042|sp|P29783|RMLC_STRGR RecName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; AltName:
Full=Thymidine diphospho-4-keto-rhamnose 3,5-epimerase;
AltName: Full=dTDP-4-keto-6-deoxyglucose 3,5-epimerase;
AltName: Full=dTDP-6-deoxy-D-xylo-4-hexulose
3,5-epimerase; AltName: Full=dTDP-L-rhamnose synthetase
gi|581676|emb|CAA44442.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces griseus]
gi|62896326|emb|CAH94326.1| dTDP-4-dehydrorhamnose 3,5-epimerase StrM [Streptomyces griseus
subsp. griseus]
gi|178468236|dbj|BAG22756.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|326660717|gb|EGE45563.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces cf. griseus
XylebKG-1]
Length = 200
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 61/177 (34%), Positives = 96/177 (54%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ + +TR F D RG F + YS++ L+ LG Q N S S G +RG+HF
Sbjct: 4 LSVQGAWLSETRAFADDRGEFQELYSARSLRGALGYDPGVAQVNRSVS-RRGVLRGVHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P +QAK V C++G + D+ VDIR SPTY W ++ + + +Y+ G H FM L
Sbjct: 63 QLPPSQAKYVTCLSGAVLDVVVDIRTGSPTYRAWEAVRLD-DPHRSLYVEAGLGHSFMAL 121
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ V+Y + Y+ + GV D + I WP D I P +SEKD+ P + +++
Sbjct: 122 TDDAVVVYLTSQGYAAGREHGVHPLDPDLGIAWP--DGIEPVLSEKDRQAPGIAEME 176
>gi|120598297|ref|YP_962871.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sp. W3-18-1]
gi|120558390|gb|ABM24317.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Shewanella sp. W3-18-1]
Length = 178
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 98/173 (56%), Gaps = 9/173 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLK----ELGLQDV-FVQDNHSFSFDCGTIRGL 56
+ V + + ++F D RG+F +T+ E G FVQ+NHS S +RGL
Sbjct: 7 ELAEVLVFEPQRFGDERGFFMETFRQSYFDACFTERGFSLPIFVQENHSRS-QQNVLRGL 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
HFQR Q KLVR G IFD+AVDIR NSPTYG WV +SA+N LQ++ P GFAHGF
Sbjct: 66 HFQRLQP-QGKLVRVCTGSIFDVAVDIRANSPTYGQWVGRVLSADNRLQMWTPPGFAHGF 124
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
L +VIY+ TD+Y+ + + W + I WPL+ P +S++D
Sbjct: 125 YVLSEFADVIYRCTDYYAPHDEYVLGWNNTDFSIDWPLI--AEPLLSDRDAIA 175
>gi|257465949|ref|ZP_05630260.1| dTDP-4-dehydrorhamnose reductase [Fusobacterium gonidiaformans ATCC
25563]
gi|315917105|ref|ZP_07913345.1| spore coat polysaccharide biosynthesis protein spsK [Fusobacterium
gonidiaformans ATCC 25563]
gi|313690980|gb|EFS27815.1| spore coat polysaccharide biosynthesis protein spsK [Fusobacterium
gonidiaformans ATCC 25563]
Length = 475
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 70/185 (37%), Positives = 112/185 (60%), Gaps = 7/185 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I+ T KFED RG+FS+ Y ++LG+Q+ F+Q+N SFS GT+RGLHFQ
Sbjct: 10 ELEGVYIIHTVKFEDERGYFSEVYQKDSFRDLGIQENFIQENVSFS-KKGTLRGLHFQTK 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KL+R + G+I+D+ VD+R+ S TYG ++ +E+S+ + ++IP FAHGF++L
Sbjct: 69 KK-QGKLLRVLEGKIYDVIVDLRKESSTYGKYIGIELSSKDQNLLWIPPDFAHGFLSLAE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQIDS 177
+ Y+ TD Y +E++ G+ W D+ ++I W L + +SEKD+ +
Sbjct: 128 KNIIQYQCTDSYDMEYEEGILWSDQDLNIDWKLDEYGFSEEELIISEKDKKQKKFVDYE- 186
Query: 178 PFEYD 182
FE +
Sbjct: 187 RFEKE 191
>gi|54022170|ref|YP_116412.1| putative dTDP-6-deoxy-4-ketoglucose epimerase [Nocardia farcinica
IFM 10152]
gi|54013678|dbj|BAD55048.1| putative dTDP-6-deoxy-4-ketoglucose epimerase [Nocardia farcinica
IFM 10152]
Length = 182
Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 6/178 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I ++ R F D RG F++ + + ++ G Q N S S G +RG+H+
Sbjct: 6 LSIPGAWVVTPRVFHDERGSFAEAFKASEFEKATGRPMDLRQVNCSVSA-AGVLRGIHYT 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G D+ VD+RR SPTYG W S+ + + +++ G H ++L
Sbjct: 65 ENPPGQAKYVTCVRGAFLDVVVDLRRGSPTYGRWDSVLLDDVDRRSVFVSEGLGHAILSL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLN 173
E ++ V Y + Y+ E D + D ++ I WP + S KD P +
Sbjct: 125 EDDSTVTYLCSLEYTPELDGEIDAFDPTLAIEWPRTGRDGRPLTYLRSPKDTAAPPFS 182
>gi|325002444|ref|ZP_08123556.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudonocardia sp. P1]
Length = 208
Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 4/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I+ + F D RG F+ + +E G Q N S S G IRG+HF
Sbjct: 13 LGIDGAWTFEPATFPDHRGSFTAPFQGPAFREALGFDLTVAQTNRSVS-HRGVIRGVHFA 71
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK + AG + D+ VD+R SPT+G + +E+ A +Y+ G H F L
Sbjct: 72 DVPPGQAKYLHVAAGAVRDVIVDLRVGSPTFGRYEVVELDAAVPRAVYLAEGLGHAFQAL 131
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T V Y + Y+ + + G++ D + + W D + P +S+KD++ P L
Sbjct: 132 ADGTVVEYLCSTPYAPDREHGISPLDPELALPW--ADGLEPVLSDKDRDAPTLAHA 185
>gi|332715750|ref|YP_004443216.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Agrobacterium sp. H13-3]
gi|325062435|gb|ADY66125.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Agrobacterium sp. H13-3]
Length = 175
Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 68/172 (39%), Positives = 100/172 (58%), Gaps = 3/172 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ T DSRG F++T+ + + L F Q + S S T+RGLHFQRP
Sbjct: 7 KIEGLWVVSTVPVRDSRGSFARTFCKREFESNALVSDFSQHSLSLSKLKHTVRGLHFQRP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ + KLV C+ G I+D+AVD+RR S TY WV + +SA+NG Q YIP GFAHGF +L
Sbjct: 67 PHQETKLVSCVKGSIWDVAVDLRRGSSTYLQWVGMVLSADNGAQFYIPEGFAHGFQSLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ V Y ++ Y+ +G+ + +I + WP ++ +SEKD P L
Sbjct: 127 DVAVSYLISAPYAEASAAGIRYDAPAIGVEWPAPPSV---ISEKDLGWPALQ 175
>gi|297570699|ref|YP_003696473.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Arcanobacterium haemolyticum
DSM 20595]
gi|296931046|gb|ADH91854.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Arcanobacterium haemolyticum
DSM 20595]
Length = 205
Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats.
Identities = 57/177 (32%), Positives = 87/177 (49%), Gaps = 6/177 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I + ++F DSRG F + + + + +G + Q N S S GT+RG+HF
Sbjct: 6 LSIEGAYRITPKQFPDSRGLFLEAFKQQTFVEAVGRELDVQQVNTSVS-KAGTVRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+QAK V C G + D VDIR SPT+G + S+ + + I+I G H F+ L
Sbjct: 65 EIAPSQAKYVMCPQGALLDFVVDIRVGSPTFGQYESVLLDDADRRAIFISEGLGHAFIAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFL 172
E NT Y + Y+ + GV ++ I WP +D + +SEKD P L
Sbjct: 125 EDNTVATYLCSAPYAPGREHGVKPTCSTLGIEWPTVDRHGNPMELLLSEKDTAAPGL 181
>gi|294817646|ref|ZP_06776288.1| Staurosporine biosynthesis 3,5-epimerase StaE [Streptomyces
clavuligerus ATCC 27064]
gi|326446650|ref|ZP_08221384.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Streptomyces clavuligerus
ATCC 27064]
gi|294322461|gb|EFG04596.1| Staurosporine biosynthesis 3,5-epimerase StaE [Streptomyces
clavuligerus ATCC 27064]
Length = 233
Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats.
Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHF 58
+ + + R F D RG F + E +F Q NHS S G +RGLHF
Sbjct: 6 LAVEGALVFTPRVFPDDRGLFLSPFQEAAFTEAHGGPLFPVAQSNHSLS-RRGVVRGLHF 64
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
P AK V C G DI VDIR SPT+G W ++ + + Y+P G H F+
Sbjct: 65 TVTPPGTAKYVHCARGAALDIVVDIRVGSPTFGRWDAVLMDQRDHRAAYLPVGVGHAFVA 124
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
LE +T + Y +++ Y E++ ++ D ++ + P+ I P +SE+D+ L +
Sbjct: 125 LEDDTVMSYLLSESYVPENELALSVLDPALGL--PVPRGIEPVLSERDRTAVTLAEA 179
>gi|229492537|ref|ZP_04386340.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus erythropolis
SK121]
gi|229320523|gb|EEN86341.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus erythropolis
SK121]
Length = 201
Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 6/178 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + ++F D+RG F + + S G Q N S S + G++RG+HF
Sbjct: 6 LKIAGAWEITPKQFGDNRGVFLEWFKSSAFTAATGRTLDLAQANCSVS-EAGSLRGIHFT 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK + C+ G D+ VD+R SPT+G W ++ I + +++ G H ++L
Sbjct: 65 DNPPGQAKYITCVKGAFLDVVVDLRVGSPTFGEWDAVAIDDVDRRAVFLAEGLGHAILSL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLN 173
E + V+Y + YS D + D + I WP D + +S KD P L
Sbjct: 125 EDGSTVMYLCSVEYSPHLDRDLDPFDPELAIEWPRTDRKGNPLTYELSAKDAAAPSLA 182
>gi|229496960|ref|ZP_04390665.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas endodontalis
ATCC 35406]
gi|229316062|gb|EEN81990.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Porphyromonas endodontalis
ATCC 35406]
Length = 185
Score = 214 bits (547), Expect = 4e-54, Method: Composition-based stats.
Identities = 63/176 (35%), Positives = 90/176 (51%), Gaps = 3/176 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ I V +L + F D RG F++ E F+Q+N SFS G +RGLH Q
Sbjct: 7 LEIPGVWLLTPQVFGDERGSFTEVLRFPEFAEKVSPCPFIQENESFS-TRGVLRGLHLQH 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQAKLVRCI G + D+AVD+R SPT+G V++ +S Q+YIP GFAHG++ +
Sbjct: 66 GSAAQAKLVRCIHGEVIDVAVDLRLQSPTFGRHVAVRLSGTTKQQLYIPRGFAHGYLVVS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP--LLDTILPSVSEKDQNLPFLNQ 174
YKV + YS + + + + I + W + +S KD L Q
Sbjct: 126 DEAIFSYKVDNGYSPQDECHLYPFEPEIGVDWLQYGVPREQLILSPKDLAGSSLQQ 181
>gi|90425693|ref|YP_534063.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
BisB18]
gi|90107707|gb|ABD89744.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
BisB18]
Length = 184
Score = 214 bits (547), Expect = 4e-54, Method: Composition-based stats.
Identities = 65/181 (35%), Positives = 99/181 (54%), Gaps = 8/181 (4%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M I +++ D RG+F +T+ + + GL Q + S++ T+RG
Sbjct: 1 MKIIPTPLAGCVLIEPDIIADERGYFLRTFCASTFEAHGLNPAIDQASLSYNRAQYTLRG 60
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LHFQ P+ + KLVR + G IFD+AVDIR +S T+ W + E++ N +YIP GFAHG
Sbjct: 61 LHFQAQPHMEDKLVRVVNGAIFDVAVDIRTDSKTFARWYAAELTEQNQRALYIPRGFAHG 120
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F+TL T V Y++ Y GV + D I + WP ++ +S++D++LP L I
Sbjct: 121 FLTLTDETTVAYQIAQPYVASLARGVNFSDPQIAVRWPHPPSV---ISQRDRDLPALAAI 177
Query: 176 D 176
D
Sbjct: 178 D 178
>gi|239983229|ref|ZP_04705753.1| dTDP-4-keto-6-deoxyhexose 3,5-epimerase [Streptomyces albus J1074]
gi|291455061|ref|ZP_06594451.1| dTDP-4-keto-6-deoxyhexose 3,5-epimerase [Streptomyces albus J1074]
gi|291358010|gb|EFE84912.1| dTDP-4-keto-6-deoxyhexose 3,5-epimerase [Streptomyces albus J1074]
Length = 220
Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats.
Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 4/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ ++ + + F D RG F +Y + E G Q +HS S G +RG+HF
Sbjct: 29 LRVSGAFVFTPQVFHDDRGMFVDSYQLPVFAETAGRPFPLFQASHSRS-RRGVVRGVHFT 87
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P AK V C AGR D+ VD+R SPT+G W S+ + A Y+P G H F+ L
Sbjct: 88 SAPPGMAKYVHCAAGRALDLVVDLRVGSPTFGRWDSVVLDAARPRSTYLPVGVGHAFVAL 147
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +T + Y ++ Y + V+ D ++D+ +PL P +S +D+ P L +
Sbjct: 148 EDDTMMTYLMSGGYVPRDEHAVSPLDPALDLPFPLDGD--PVLSARDRQAPTLAEA 201
>gi|240167895|ref|ZP_04746554.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium kansasii ATCC
12478]
Length = 183
Score = 214 bits (546), Expect = 5e-54, Method: Composition-based stats.
Identities = 61/171 (35%), Positives = 101/171 (59%), Gaps = 3/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ +++++T D+RG F + + + L+ L Q NHS + G +RG+HFQ PP
Sbjct: 8 ISDLKVVQTLPHRDARGAFVRLFCANDLQSLLGHRQIAQINHSRTSHAGAVRGMHFQYPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+A+ K+VRC++GR++D+AVD+R SPT+ W + E++ ++ + IP GFAHGF LE +
Sbjct: 68 HAEMKMVRCLSGRVWDVAVDLRSGSPTFLRWHAQELAPDDAQMLVIPEGFAHGFQVLEPD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+E++Y T FY + G+ D + I WPL +S +D L+
Sbjct: 128 SELLYLHTAFYHPPSEGGLRHDDPRLAIAWPLPPRD---LSPRDLAHRLLD 175
>gi|125975044|ref|YP_001038954.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum ATCC
27405]
gi|125715269|gb|ABN53761.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum ATCC
27405]
Length = 182
Score = 214 bits (546), Expect = 5e-54, Method: Composition-based stats.
Identities = 68/186 (36%), Positives = 107/186 (57%), Gaps = 11/186 (5%)
Query: 1 MNINPVRILK-----TRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
++I +I+ R F D+RG F +T+ ++ + GL+ F ++ +S S G +RG
Sbjct: 3 LDIKESKIIGCYELIPRIFSDNRGRFVKTFHEEVFAQAGLETNFAEEYYSVS-HKGVLRG 61
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LHFQ+PP K+V C+ G + D+ VD+R SPTYG + +++++ IYIP G AHG
Sbjct: 62 LHFQKPPREHTKVVYCVHGEVMDVVVDLRVGSPTYGKYDIFDLNSDKANMIYIPKGLAHG 121
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F +IYKVT YS E+D+G+ W S+ I WP + P +SE+D+ LP ++
Sbjct: 122 FYVKSNQAILIYKVTTVYSPENDTGIRWD--SVGIPWPNDN---PIMSERDRMLPVFEEM 176
Query: 176 DSPFEY 181
+ F Y
Sbjct: 177 QNIFTY 182
>gi|302539098|ref|ZP_07291440.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp. C]
gi|302447993|gb|EFL19809.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp. C]
Length = 200
Score = 214 bits (546), Expect = 5e-54, Method: Composition-based stats.
Identities = 60/177 (33%), Positives = 97/177 (54%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ + +TR F D RG F + YS + L + LG Q N S S G +RG+HF
Sbjct: 4 LSVQGAWLSETRAFADGRGEFQELYSGRALGDVLGYDPGVAQANRSVS-RRGVLRGVHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P +QAK V C++G + D+ VDIR SPTY W ++ + + +YI G H F+ L
Sbjct: 63 QMPPSQAKYVTCLSGAVLDVVVDIRVGSPTYRSWEAVRLD-DPHRSLYIEAGLGHAFLAL 121
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ V+Y + Y+ + GV D ++ I WP + + P +SEKD+ P L++++
Sbjct: 122 TDDAVVVYLTSRGYAPGREHGVHPLDPALGIAWP--EDLEPVLSEKDRTAPGLDEME 176
>gi|291615352|ref|YP_003525509.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sideroxydans lithotrophicus
ES-1]
gi|291585464|gb|ADE13122.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sideroxydans lithotrophicus
ES-1]
Length = 186
Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats.
Identities = 69/184 (37%), Positives = 105/184 (57%), Gaps = 8/184 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ + +++ + ED RG+ S+ Y + +E GL Q N + + G +RG+HFQ PP
Sbjct: 11 LSGLTLVQRKAIEDQRGFLSRFYCADEFREAGLTKAIKQINQTLTRKKGAVRGMHFQYPP 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y +AKLV C+ G IFD+AVD+R NSPT+ W +SA N + IP GFAHGF TL +
Sbjct: 71 YVEAKLVSCLHGEIFDVAVDLRSNSPTFLHWHGAILSAQNRQSLLIPEGFAHGFQTLTED 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
E+IY T+ Y E + + + D + I WPL T +S++D N + Q ++
Sbjct: 131 CELIYLHTESYHPEAEGALNFADPKLGIVWPLATT---EISDRDMNHKLIEQ-----DFQ 182
Query: 183 GLPL 186
G+ L
Sbjct: 183 GISL 186
>gi|257057034|ref|YP_003134866.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Saccharomonospora viridis DSM
43017]
gi|256586906|gb|ACU98039.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Saccharomonospora viridis DSM
43017]
Length = 202
Score = 214 bits (545), Expect = 6e-54, Method: Composition-based stats.
Identities = 55/176 (31%), Positives = 82/176 (46%), Gaps = 4/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + F D RG F Y + +G + Q N+S S GTIRG+HF+
Sbjct: 6 LAVRDAYEFVPPAFPDRRGLFVAPYQEPAFVEAVGHRLTVAQTNNSVS-RRGTIRGVHFR 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C G + D+ VD+R SPT+G W + + + +Y+ G H FM L
Sbjct: 65 DTPPGQAKYVYCAHGALLDVVVDLRVGSPTFGQWDVVRLDSTAMRCVYLAEGLGHAFMAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E T + Y + Y + G+ D +++ WP + P +S+KD P L Q
Sbjct: 125 EDGTVMTYLCSTGYEPSAEHGITPLDPELNLPWP--SDVEPVLSDKDAAAPTLAQA 178
>gi|117621524|ref|YP_858587.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117562931|gb|ABK39879.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 187
Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats.
Identities = 68/172 (39%), Positives = 100/172 (58%), Gaps = 3/172 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ R+L+ DSRG S+ + ++ L LG + Q N +++ CGTIRGLH+Q PP
Sbjct: 11 LPGARLLQREVCGDSRGTLSRLFCAEELAMLGWKSCIAQVNLTYTSRCGTIRGLHYQHPP 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
YA+ KLV CI GRI+D+ VDIR +SPT+ W + E+S +N + IP GFAHGF TL
Sbjct: 71 YAEKKLVTCIQGRIWDVIVDIRADSPTFLQWYAEELSDDNHRSLLIPEGFAHGFQTLSDE 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E++Y + + + G+ D + I+WPL + +S +D P LN
Sbjct: 131 VEILYCHSAVHVPAAEGGLCPLDPRLQISWPLP---ITEISARDHQHPVLND 179
>gi|157384620|gb|ABV49598.1| NDP-hexose 3,(5)-epimerase [Streptomyces eurythermus]
Length = 211
Score = 213 bits (544), Expect = 8e-54, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 4/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I +++ D RG F + + + + G VQ N + + G +RG+HF
Sbjct: 11 LGIEGAWVVEPEVHPDRRGEFHEWFQGERFRRATGHTLPLVQANVAVN-RRGALRGIHFT 69
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
R P QAK C+ G ++ VDIR SPT+G W ++ + +N +Y+ G F L
Sbjct: 70 RLPPGQAKYSACVQGAGIEVVVDIRTGSPTFGRWEAVPVDEHNRTAVYVAAGLGRAFFAL 129
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
T +IY + Y+ D ++ D + I WP D I P +S +D P L + +
Sbjct: 130 TDRTTLIYLCSSGYAPRLDHAISPLDPGLAIAWP--DGIEPLLSAQDAGAPTLAEAE 184
>gi|329851012|ref|ZP_08265769.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Asticcacaulis
biprosthecum C19]
gi|328839858|gb|EGF89430.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Asticcacaulis
biprosthecum C19]
Length = 175
Score = 213 bits (544), Expect = 8e-54, Method: Composition-based stats.
Identities = 59/168 (35%), Positives = 94/168 (55%), Gaps = 3/168 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V ++++ D RG F +T+ GL +Q++ S + T+RG+H Q P
Sbjct: 8 IDGVVVVESESAADDRGSFVRTWCRDTFAAAGLDFEPIQESLSRNLKTATLRGMHIQGAP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ + KLVRC+ GRIFD+AVD+R +S +Y W LE+ + +++P G AHGF+TL +
Sbjct: 68 FGEQKLVRCLRGRIFDVAVDLRPDSASYCRWFGLELDESRDAALFLPRGVAHGFITLSDD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
V Y + Y+ H GV W D + I WP + +S++D+N P
Sbjct: 128 AWVHYMIDTAYAPGHAGGVRWDDPAFGIAWPTEPVV---ISDRDRNWP 172
>gi|326383444|ref|ZP_08205131.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gordonia neofelifaecis NRRL
B-59395]
gi|326197850|gb|EGD55037.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gordonia neofelifaecis NRRL
B-59395]
Length = 203
Score = 213 bits (544), Expect = 9e-54, Method: Composition-based stats.
Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 6/180 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I+ + D RG F + + + ++ E +G + Q N S S G IRG+HF
Sbjct: 6 LTIDGAWAFTPVQHGDGRGLFLEAFKADVVAETIGHRLDLAQVNTSVSA-AGVIRGVHFS 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C AG + D+ VDIR SPT+G W ++ + + +Y+ G H F +L
Sbjct: 65 DVPPGQAKYVTCSAGAVLDVVVDIRVGSPTFGRWDAVLLDDLDRRAVYLSEGLGHAFCSL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPFLNQI 175
+ + V Y + Y + G+ D I I WP + + +SEKD P L Q
Sbjct: 125 QDGSTVTYLCSTGYRPGAEHGIDPMDPEIGIAWPKVARDGSPLEFVLSEKDAAAPSLVQA 184
>gi|241207189|ref|YP_002978285.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240861079|gb|ACS58746.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 180
Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats.
Identities = 65/167 (38%), Positives = 98/167 (58%), Gaps = 3/167 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ +++ D RG F++T+ ++ GL V+ Q N S + GT+RG+H+Q P
Sbjct: 8 VSGAFVVEVDARSDDRGMFARTFDAQTFAAQGLVPVYPQCNISQNHKRGTLRGMHYQAQP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ KLVR GR+FD+AVD+R +SP+Y W S+E+ A YIP G AHGF+TLE N
Sbjct: 68 RPEIKLVRATRGRVFDVAVDLRPDSPSYLKWASVELDAIRHNAFYIPAGCAHGFLTLEDN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
E+ Y++++ Y E GV W D + I WP +I +SE+D L
Sbjct: 128 CELFYQMSEAYVPELARGVRWDDPAFSIGWPFPPSI---ISERDAAL 171
>gi|171912554|ref|ZP_02928024.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Verrucomicrobium spinosum DSM
4136]
Length = 183
Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats.
Identities = 65/176 (36%), Positives = 97/176 (55%), Gaps = 3/176 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I++ D+RG+ ++TY GL + Q NH+ + G++RGLH+Q P
Sbjct: 8 IPEVMIVEPEPHHDARGFLARTYCEGEFACRGLNTRWPQQNHTLTKGRGSVRGLHWQADP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
++ KLVRC+AG D+ VD+R +SPT+G W E+SA + IYIP GFAHGF L
Sbjct: 68 ASEIKLVRCLAGCALDVVVDVRPDSPTFGTWELHELSAASRRAIYIPAGFAHGFQCLTDE 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
E+ Y +++ ++ G+ D ++ I WPL SE+D NLP + P
Sbjct: 128 CELFYLMSERHAPALARGLNASDPTLAIPWPLPVVNR---SERDVNLPLWSDFAKP 180
>gi|311896581|dbj|BAJ28989.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Kitasatospora setae
KM-6054]
Length = 199
Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 5/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I + ++ D RG F + Y L E+ G Q N S S +RG+HF
Sbjct: 6 LSIPGAFEVTPQQHGDPRGLFMEWYRFDKLSEVVGHPLRLAQGNLSVSAK-NVVRGVHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G + D+ VD+R SP +G W + + + +Y+P G HGF L
Sbjct: 65 DVPPGQAKYVSCVRGAVLDVVVDLRVGSPAFGRWEFVRLDETDRRSVYLPEGLGHGFCAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + Y ++ Y+ + GV D + I WP+ +P +S KD+ P L +
Sbjct: 125 TDDATLSYVCSETYNPTGEHGVHPLDPDLGIEWPVE---VPQLSAKDEQAPTLAEA 177
>gi|159186325|ref|NP_355864.2| dTDP-4-dehydrorhamnose 3,5-epimerase [Agrobacterium tumefaciens
str. C58]
gi|159141459|gb|AAK88649.2| dTDP-4-dehydrorhamnose 3,5-epimerase [Agrobacterium tumefaciens
str. C58]
Length = 175
Score = 212 bits (542), Expect = 1e-53, Method: Composition-based stats.
Identities = 69/169 (40%), Positives = 99/169 (58%), Gaps = 3/169 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ T DSRG F++T+ + + L F Q + S S TIRGLHFQRP
Sbjct: 7 KIEGLLVVNTIPVRDSRGSFARTFCKREFESNALVSDFSQHSLSLSKLKHTIRGLHFQRP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ + KLV C+ G I+D+AVD+RR SPTY WV +SA+NG Q YIP GFAHGF +L
Sbjct: 67 PHQETKLVSCVKGSIWDVAVDLRRGSPTYLQWVGTVLSADNGAQFYIPEGFAHGFQSLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
+ V Y ++ Y+ +G+ + +I + WP ++ +SEKD P
Sbjct: 127 DVAVSYLISVPYAEASAAGIRHDEPAIGVEWPAPASV---ISEKDLGWP 172
>gi|256005064|ref|ZP_05430034.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum DSM
2360]
gi|281418539|ref|ZP_06249558.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum
JW20]
gi|255990915|gb|EEU01027.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum DSM
2360]
gi|281407623|gb|EFB37882.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum
JW20]
gi|316939208|gb|ADU73242.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum DSM
1313]
Length = 182
Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 67/186 (36%), Positives = 106/186 (56%), Gaps = 11/186 (5%)
Query: 1 MNINPVRILK-----TRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
++I +I+ R F D+RG F +T+ ++ + GL+ F ++ +S S G +RG
Sbjct: 3 LDIKESKIIGCYELIPRIFSDNRGRFVKTFHEEVFAQAGLETNFAEEYYSVS-HKGVLRG 61
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LHFQ+PP K+V C+ G + D+ VD+R SPT G + +++++ IYIP G AHG
Sbjct: 62 LHFQKPPREHTKVVYCVHGEVMDVVVDLRVGSPTCGKYDIFDLNSDKANMIYIPKGLAHG 121
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F +IYKVT YS E+D+G+ W S+ I WP + P +SE+D+ LP ++
Sbjct: 122 FYVKSNQAILIYKVTTVYSPENDTGIRWD--SVGIPWPNDN---PIMSERDRMLPAFEEM 176
Query: 176 DSPFEY 181
+ F Y
Sbjct: 177 QNIFTY 182
>gi|68536977|ref|YP_251682.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium jeikeium
K411]
gi|260579322|ref|ZP_05847204.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium jeikeium ATCC
43734]
gi|68264576|emb|CAI38064.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium jeikeium
K411]
gi|258602451|gb|EEW15746.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium jeikeium ATCC
43734]
Length = 231
Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 3/176 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + D RG F +++ ++ E LG Q N S S +RG+H
Sbjct: 23 LPIPGAWAYVPKVHGDERGSFHESFKAEAFGEKLGYPFEVAQGNLSRSSR-NVVRGIHLA 81
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C++G I D+ VD+R SPT+G +++E+SA N +Y+P G HGF
Sbjct: 82 DVPPGQAKFVSCLSGAITDVLVDVRVGSPTFGQHITVELSAENNFSVYVPLGVGHGFRAH 141
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T V Y VT+ Y+ + + G+ D + + W + +S KD + P L+++
Sbjct: 142 TDQTTVNYLVTEAYNPQREYGIDPFDAELAVAWGVTKE-QAVLSTKDDSAPSLSEV 196
>gi|92118278|ref|YP_578007.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrobacter hamburgensis X14]
gi|91801172|gb|ABE63547.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrobacter hamburgensis X14]
Length = 183
Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats.
Identities = 69/172 (40%), Positives = 101/172 (58%), Gaps = 3/172 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ + + ++ D+RG FS+ + + L Q N S + G IRG+H+Q P
Sbjct: 8 ISGLFVTESLALGDARGKFSRIFCERELAAAVGARTIRQANVSSTAVVGAIRGMHYQHAP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
A+ K+VRCI GR+FD+AVD+RR SPT+ W E+S NG+ IP G AHGF LE N
Sbjct: 68 RAEMKIVRCIQGRVFDVAVDLRRGSPTFLHWHGAELSQENGMAFIIPEGCAHGFQVLEPN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ ++Y T+FYS EH++GV D + I WPL T +S +D + P L++
Sbjct: 128 SSLLYFHTEFYSPEHEAGVRHDDPRVAIAWPLPPTN---LSVRDASHPPLDE 176
>gi|254476304|ref|ZP_05089690.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruegeria sp. R11]
gi|214030547|gb|EEB71382.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruegeria sp. R11]
Length = 192
Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats.
Identities = 71/180 (39%), Positives = 98/180 (54%), Gaps = 8/180 (4%)
Query: 1 MNIN-----PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M I V + D RG F + + ++ E GL + Q N S S GT+RG
Sbjct: 1 MKIEPFAMEGVYRIGWSAKPDPRGAFGRLFCAETFAEAGLVSQWAQTNLSRSTRRGTLRG 60
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
+H+Q P+A+ KL+ C+AGRI D+ VD+R S TYG W +LE+ +G +YIP G AHG
Sbjct: 61 MHYQTAPFAETKLLVCLAGRIHDVLVDLRPQSATYGQWCALELDGASGSGVYIPEGIAHG 120
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F TL + + Y + YS H +GVA+ D + I WPL VSE+D LP L +I
Sbjct: 121 FQTLSDDVMLHYSHSRPYSPAHQAGVAFDDPDLAIQWPLPPVA---VSERDLTLPRLCEI 177
>gi|111225599|ref|YP_716393.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia alni ACN14a]
gi|111153131|emb|CAJ64878.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase) (dTDP-L-rhamnose synthetase) [Frankia
alni ACN14a]
Length = 175
Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats.
Identities = 60/166 (36%), Positives = 95/166 (57%), Gaps = 3/166 (1%)
Query: 7 RILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
I+ F D+RG F++T+ ++ GL Q + +F+ GTIRG+H+ P +
Sbjct: 2 WIVDVEAFTDARGLFARTFCAEEFAAAGLAVEVAQCSVAFNAAAGTIRGMHWAGEPVRET 61
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
KLVRC G + D+ VD R +SPTY V++E+SA+N ++I G AHG+ TL TE
Sbjct: 62 KLVRCTRGALLDVVVDPRPDSPTYLSHVAVELSADNHRALFIDAGLAHGYQTLADATEAT 121
Query: 127 YKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
Y++ ++ HD G+ + D + I WPL ++ +S+KD+ P L
Sbjct: 122 YQMNVPFTPGHDRGLRFDDPRLGIAWPLPVSV---ISDKDRAWPLL 164
>gi|146304599|ref|YP_001191915.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Metallosphaera sedula DSM
5348]
gi|145702849|gb|ABP95991.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Metallosphaera sedula DSM
5348]
Length = 176
Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats.
Identities = 77/178 (43%), Positives = 105/178 (58%), Gaps = 15/178 (8%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
PV +++T ++ D RG+F + + FVQ NHSFS G +RGLHFQ P
Sbjct: 10 PVTLIETTQYPDDRGFFQELFRESQF-----PCRFVQVNHSFS-RRGVLRGLHFQAMPVP 63
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLV I GRI+D+AVD+RR + W +E++ G ++IP GFAHGF LE +
Sbjct: 64 QGKLVTVITGRIYDVAVDLRRG---FKGWAGVELTP--GKLLWIPPGFAHGFQALED-SH 117
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
VIY VT +S +HD+GVAW D I + WPL + P +SEKD+ LP L + + F D
Sbjct: 118 VIYFVTREFSPQHDAGVAWDDPEIGVRWPLPN---PILSEKDRKLPRLAESRANFPED 172
>gi|304312288|ref|YP_003811886.1| DTDP-4-dehydrorhamnose 3,5-epimerase [gamma proteobacterium HdN1]
gi|301798021|emb|CBL46243.1| DTDP-4-dehydrorhamnose 3,5-epimerase [gamma proteobacterium HdN1]
Length = 183
Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats.
Identities = 64/185 (34%), Positives = 102/185 (55%), Gaps = 11/185 (5%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M I V + D RG F++ + + + E+ F Q N S + GT+RG
Sbjct: 1 MKIHSTAFEGVYEIGHTPLTDERGCFTRLFCEREMTEIRSNLHFTQVNWSQTKSSGTVRG 60
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
+H+Q PP A+AKL+RC+ GR+FD+ VD+R S T+ W + E+S +N I++P GFAHG
Sbjct: 61 MHYQMPPAAEAKLIRCLHGRVFDVIVDLRPASKTFLQWHATELSEDNFRAIFVPEGFAHG 120
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F +L N ++Y T ++ ++G+ D + I+WPL + SE+D++ P I
Sbjct: 121 FQSLSENAHLLYMHTVAWTPACEAGLRHDDPRLAISWPLP---VLQCSERDRHHPL---I 174
Query: 176 DSPFE 180
D+ F
Sbjct: 175 DAKFT 179
>gi|118581747|ref|YP_902997.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pelobacter propionicus DSM
2379]
gi|118504457|gb|ABL00940.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pelobacter propionicus DSM
2379]
Length = 187
Score = 211 bits (539), Expect = 3e-53, Method: Composition-based stats.
Identities = 72/180 (40%), Positives = 100/180 (55%), Gaps = 6/180 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ + F+D RG F +TY+ K + G + ++ +S S G +RGLHFQ PP
Sbjct: 8 ISGCLEIVPVCFQDERGRFVKTYNEKTFESHGCCTDWKEEFYSVS-RRGVLRGLHFQLPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ KLV C AG + D VD+R+ SPTYG + LE+SA G +YIP G AHGF +
Sbjct: 67 HQHDKLVYCTAGTVLDAVVDLRKGSPTYGDHIMLELSAEKGNMLYIPRGLAHGFYVTSES 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
++YKV+ Y+ +HD+G+ W S I WP P +S KD LP L SPF +D
Sbjct: 127 ATMMYKVSSVYAPDHDAGIRWD--SAGIAWP---ASTPIISTKDGLLPPLIDFSSPFSFD 181
>gi|317154956|ref|YP_004123004.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio aespoeensis
Aspo-2]
gi|316945207|gb|ADU64258.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfovibrio aespoeensis
Aspo-2]
Length = 183
Score = 211 bits (539), Expect = 3e-53, Method: Composition-based stats.
Identities = 61/169 (36%), Positives = 99/169 (58%), Gaps = 3/169 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + L+ F D RG F++ Y + L+ +GL+ Q N S + G+IRG+HFQ
Sbjct: 6 LPLAGAYRLEDAPFADQRGRFARIYCAHELESIGLRKPIAQANISLTRQKGSIRGMHFQT 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+A+ K++RC+ G +FD+ +D+R+ S TY W +S +Y+P GFAHGF +E
Sbjct: 66 VPHAEIKIIRCLHGAVFDVIIDLRKASETYLQWHGEILSPERAYALYVPEGFAHGFQVIE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
+ +++Y TDFY+ E + GV + D +I+I WPL +S+KD+
Sbjct: 126 EDAQLLYLHTDFYTPECEGGVRFDDPAINIAWPLPPRD---ISDKDRLH 171
>gi|308390302|gb|ADO32600.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Kitasatospora
kifunensis]
Length = 199
Score = 211 bits (539), Expect = 3e-53, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 5/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I + ++ D RG F + Y L+E+ G Q N S S +RG+HF
Sbjct: 6 LSIPGAFEVTPQQHGDPRGLFMEWYRFDRLEEVVGHPLRLAQGNLSVSAK-DVVRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G + D+ VD+R SP +G W + + +YIP G HGF L
Sbjct: 65 DVPPGQAKYVSCVRGAVLDVVVDLRVGSPAFGKWEFVRLDDTERKSVYIPEGVGHGFCAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + Y ++ Y+ + V D + I WP P +S +D P L +
Sbjct: 125 TDDATLSYVCSETYNPTGEHAVHPLDPDLGIEWPAD---APQLSARDAAAPTLAEA 177
>gi|123968939|ref|YP_001009797.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prochlorococcus marinus str.
AS9601]
gi|123199049|gb|ABM70690.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prochlorococcus marinus str.
AS9601]
Length = 178
Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats.
Identities = 69/175 (39%), Positives = 102/175 (58%), Gaps = 5/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYS--SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I+ V ++T F D RG F + K K Q N S + GT+RGLH+Q
Sbjct: 6 SIDGVFEIQTDIFNDQRGSFINFFRSSEKAFKNCWFDKEIKQVNLSKNSFKGTLRGLHYQ 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
PYA+ K+VRCI G ++D+AVD+R +S TY W +E+S I IP G AHGF L
Sbjct: 66 LNPYAEKKMVRCIKGCVWDVAVDLREDSSTYLSWHCVELSPKFANAIVIPEGCAHGFQVL 125
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E ++E++Y + + E ++G+ W D I I+WPL ++SE+DQNLP+L++
Sbjct: 126 EEDSEILYLHSGDWIKESETGIRWNDPQIAISWPLQ---AVNLSERDQNLPYLSE 177
>gi|91782843|ref|YP_558049.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia xenovorans
LB400]
gi|91686797|gb|ABE29997.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia xenovorans
LB400]
Length = 183
Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats.
Identities = 59/176 (33%), Positives = 96/176 (54%), Gaps = 5/176 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V++++ F D G+ +++S ++ FVQD HS S G +RGLH+Q
Sbjct: 10 LPEVKLIEPEVFCDEFGFCFESFSEDEFIADVSQAFQFVQDRHS-SAVRGVLRGLHYQVQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q +L+R + G +F +AVD+R NSP +G W ++SA N QI++P GFAHGF+ L
Sbjct: 69 -RPQGRLMRVVVGEVFGVAVDVRLNSPNFGKWCGADLSAANHRQIWVPPGFAHGFVVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E ++K T+++ E + + W D I I WP+ P + KD L + ++
Sbjct: 128 VAECLWKTTEYWFPELERCILWSDPDIGIEWPI--DFEPILGAKDAAGRRLYEAEN 181
>gi|332296014|ref|YP_004437937.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermodesulfobium narugense
DSM 14796]
gi|332179117|gb|AEE14806.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermodesulfobium narugense
DSM 14796]
Length = 181
Score = 211 bits (538), Expect = 4e-53, Method: Composition-based stats.
Identities = 68/173 (39%), Positives = 107/173 (61%), Gaps = 4/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I+K++KF D+RG+F + + KE+G++ F QDN SFS G IRGLH+Q+
Sbjct: 9 GIEGLIIIKSKKFFDNRGYFQEIFKDSDFKEMGIELDFSQDNLSFS-KKGVIRGLHYQKA 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY QAKLV+C+ G IFD VD+RR+S T+G + ++ + ++ +++P GF HGF L
Sbjct: 68 PYGQAKLVKCVYGSIFDAVVDVRRDSKTFGKYFTVILHDSDDYLLFVPDGFLHGFCVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
V+YK + YS ++ SGV + D+ + I WP+ + P +S +D L +
Sbjct: 128 FALVLYKTSSEYSPKNSSGVIYNDQFLSIPWPVEN---PIISPQDAGLKSFKE 177
>gi|24575097|gb|AAL06668.1| dNTP-4-keto-6-deoxyglucose epimerase [Streptomyces globisporus]
Length = 192
Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 4/175 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ + + F D RG F + + + + +G Q N + S G +RG+HF
Sbjct: 5 GISGAWTEEKQVFRDERGSFREWFQGEPFRRTVGHSFDLRQANCAISSH-GVLRGIHFAG 63
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
QAK C+ G +F VDIR SPT+G W ++E+ NG +Y+ G GF+TL
Sbjct: 64 GVPGQAKYFSCLRGSVFGAVVDIRVGSPTFGGWRTVELGEENGRALYVSAGLGFGFLTLS 123
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
++Y + Y + G+ D + I WP I P +SE+D + P L +
Sbjct: 124 DEAVIVYLCSAAYDPRLEHGLNPLDPEVGIAWP--PEITPILSERDSSAPGLAEA 176
>gi|296137807|ref|YP_003645050.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Tsukamurella paurometabola
DSM 20162]
gi|296025941|gb|ADG76711.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Tsukamurella paurometabola
DSM 20162]
Length = 191
Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats.
Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 7/181 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQ-DVFVQDNHSFSFDCGTIRGLHF 58
+ + ++F D RG F + + + +E G Q N S S G +RG+H+
Sbjct: 8 LTVPGAFEFTPQQFGDDRGRFLEWFKASEFEEATGAPMPELQQANCSVSA-AGVLRGVHY 66
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
P QAK V C+ G D+ VD+RR+SPT+G W ++ + + +Y+P G H ++
Sbjct: 67 TLTPPGQAKYVTCVRGAFLDVVVDLRRDSPTFGTWDTVLLDDVDRRAVYLPAGLGHAILS 126
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQ 174
LE + V+Y + Y+ + D + D + I WP + S KD+ P L +
Sbjct: 127 LEDRSTVMYLCSVEYAPDVDRELDAFDPDLAIDWPTEGRDGTPLTYVRSAKDEAAPSLRE 186
Query: 175 I 175
+
Sbjct: 187 V 187
>gi|197103963|ref|YP_002129340.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Phenylobacterium zucineum
HLK1]
gi|196477383|gb|ACG76911.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Phenylobacterium zucineum
HLK1]
Length = 176
Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats.
Identities = 60/168 (35%), Positives = 97/168 (57%), Gaps = 3/168 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V ++ D RG F++ + + G+ V Q + S + GT+RGLH+Q P
Sbjct: 8 IPGVVRVEAEPRADERGGFARLHCPEEFAAAGVPFVPAQTSLSRNPHAGTLRGLHYQPAP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ + KLVR + GR+FD+AVD+R +SPT+ W ++E+ A + IP G AHGF+TLE +
Sbjct: 68 HGEVKLVRVVRGRVFDVAVDLRADSPTHRRWTAVELCAETMTALLIPEGVAHGFLTLEPD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
T+V+Y++ Y ++GV W D + I WP + +S++D+ P
Sbjct: 128 TDVLYQIAPAYRPGREAGVRWDDPAFGIDWP---AVPALISDRDRTYP 172
>gi|120400390|gb|ABM21444.1| sugar biosynthesis protein [Lactobacillus johnsonii]
Length = 171
Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats.
Identities = 67/169 (39%), Positives = 91/169 (53%), Gaps = 18/169 (10%)
Query: 22 SQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAV 81
+T++ + + + G FVQDN S S G +RGLHFQ+ Y Q KLVR + G +FD+AV
Sbjct: 1 METFNQRDMMDAGFSINFVQDNQS-SSTKGVLRGLHFQKK-YPQIKLVRAVRGSVFDVAV 58
Query: 82 DIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGV 141
D+R +S TYG W +E++A N Q IP GFAHGF+ L E YKV DF+ + G+
Sbjct: 59 DLRSDSKTYGKWYGVELTAENKKQFLIPQGFAHGFLVLSDEAEFCYKVNDFWHPNDEGGM 118
Query: 142 AWQDKSIDITWP----------------LLDTILPSVSEKDQNLPFLNQ 174
AW D I I WP L D ++S++DQ L
Sbjct: 119 AWNDPEIGIEWPHLKGDYPGSPDASGYTLDDGTKLTLSDRDQEWKGLKD 167
>gi|29827490|ref|NP_822124.1| dTDP-4-keto-6-deoxyhexose 3,5-epimerase [Streptomyces avermitilis
MA-4680]
gi|5921160|dbj|BAA84596.1| dTDP-4-keto-6-deoxyhexose 3,5-epimerase [Streptomyces avermitilis]
gi|29604590|dbj|BAC68659.1| dTDP-4-keto-6-deoxyhexose 3,5-epimerase [Streptomyces avermitilis
MA-4680]
Length = 225
Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 2/176 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + F D RG F Y +L E G + Q S S G +RG+HF
Sbjct: 32 LVVEGAVEFTPTVFPDERGLFVTPYQEPVLSEAVGHRFPTAQTCQSVS-RRGVVRGVHFT 90
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C GR D VD+R SPT+G W S+ + +Y+P G H F+ L
Sbjct: 91 ATPPGQAKYVHCARGRALDFVVDLRTGSPTFGQWDSVLLDQERFRSVYLPIGVGHAFVAL 150
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +T ++Y ++ Y +++ ++ +D + + P +SE+D+ P L Q
Sbjct: 151 EDDTAMVYLMSSGYVPQNEHALSPEDPDLALPLGHHLGRAPILSERDRRAPTLQQA 206
>gi|115526250|ref|YP_783161.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
BisA53]
gi|115520197|gb|ABJ08181.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodopseudomonas palustris
BisA53]
Length = 177
Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats.
Identities = 69/173 (39%), Positives = 100/173 (57%), Gaps = 2/173 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++++ ++ + DSRG F++ + L GL VQ + SF+ CGT+RGLH+Q
Sbjct: 6 LDLDGAVLIDVDRIVDSRGHFARVFCIDELTAAGLDAGIVQASVSFNNKCGTLRGLHWQA 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
A+AK VRC G IFD VD+R SPTY WVS+E+S +N +YIP GFAHGF TL
Sbjct: 66 GAQAEAKYVRCTRGAIFDAIVDLRPQSPTYLRWVSIELSQDNQRTLYIPKGFAHGFQTLC 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+TE+ Y++T+ ++ E G + D + I WP T +S+KD P
Sbjct: 126 DDTEIFYQMTERFAPEAACGARFDDAAFGIVWP--KTEQRIISDKDLGYPGFA 176
>gi|125625383|dbj|BAF46778.1| putative dTDP-4-keto-6-deoxyglucose 3,5-epimerase [Nocardia
brasiliensis]
Length = 186
Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats.
Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 6/181 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
M + D RG F +T+ + + +G +Q N S S G +RG+H+
Sbjct: 6 MAVPGAWEFTPALHGDERGVFVETFKASEFEKAVGRTFDLLQVNTSTSA-AGVLRGIHYT 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G D+ VD+R SPT+G W S I + +++ G H + L
Sbjct: 65 EDPPGQAKYVSCVRGAFLDVVVDLRPGSPTFGTWDSAVIDDVDRRSVFLSEGLGHALLAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQI 175
E ++ V Y T Y+ E+D G+ D + I WP + ++ S S KD P L+ +
Sbjct: 125 EDDSTVNYLCTLEYTPEYDRGLDAFDPQLGIDWPTVGRDGRPLVFSRSPKDAAAPRLSSL 184
Query: 176 D 176
+
Sbjct: 185 N 185
>gi|288549268|gb|ADC52828.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces
platensis]
Length = 200
Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats.
Identities = 60/177 (33%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ + +TR F D RG F + YS + L LG + Q N S S G +RG+HF
Sbjct: 4 LSVKGAWLSETRAFADDRGEFQELYSGRSLSAALGYEPGVAQVNRSVSRQ-GVLRGVHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P QAK V C++G + D+ VDIR SPTY W ++ + + +Y+ G H FM L
Sbjct: 63 QVPPGQAKYVTCLSGAVLDVVVDIRTGSPTYRSWEAVRLD-DPHRSLYVEAGLGHSFMAL 121
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ V+Y + Y+ + GV D + I WP + I P +S+KDQ P + +++
Sbjct: 122 TDDAVVVYLTSQGYASGREHGVHPLDPDLAIAWP--EHIEPVLSKKDQQAPGIKEME 176
>gi|310827983|ref|YP_003960340.1| dTDP-4-dehydrorhamnose 3 [Eubacterium limosum KIST612]
gi|308739717|gb|ADO37377.1| dTDP-4-dehydrorhamnose 3 [Eubacterium limosum KIST612]
Length = 189
Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats.
Identities = 65/174 (37%), Positives = 96/174 (55%), Gaps = 2/174 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + I+ ED RG+F +++ ++ + G++ +D S+S G +RGLHFQ
Sbjct: 11 IRDLMIIHPFYMEDERGFFLKSFEKEIFWQNGIKTEIFEDFESYSIK-GVLRGLHFQTE- 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
QAKLVR + G I+D+AVD+R+ S T+G W + +S +N +IP GFAHGF+ L N
Sbjct: 69 KPQAKLVRALTGTIYDVAVDLRKTSKTFGKWHAEILSVDNHKAFFIPKGFAHGFLVLSDN 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
V YK +S E D+G+ W D + I WP VSEKD+ L +
Sbjct: 129 ALVSYKCEGAFSKETDTGIVWNDPELKIDWPTNQVDEIIVSEKDRRLQTFSHFK 182
>gi|158425101|ref|YP_001526393.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Azorhizobium caulinodans ORS
571]
gi|158331990|dbj|BAF89475.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Azorhizobium caulinodans ORS
571]
Length = 176
Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats.
Identities = 59/168 (35%), Positives = 94/168 (55%), Gaps = 3/168 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V ++ D RG F++T+ ++ GL D + N S++ GT+RGLH Q
Sbjct: 7 KIPGVMEVEITPLTDERGLFARTFCAETFAGHGLADRYPHQNTSYNPRRGTLRGLHLQAE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P +AKLVR GR+FD+AVD+R +SP Y W ++E+ A+ +YIP G AHGF+TL+
Sbjct: 67 PSPEAKLVRATRGRVFDVAVDLRPSSPAYRAWTAVELDADRRNALYIPAGCAHGFLTLDD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
++EV Y +++ Y W D + + WP ++ +S +D +
Sbjct: 127 DSEVFYLMSETYVPALARTYRWNDPAFGVDWPFEPSV---ISARDADA 171
>gi|7800660|gb|AAF70101.1|AF257324_2 AknL [Streptomyces galilaeus]
Length = 201
Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats.
Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 5/179 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHF 58
+ ++ + FED RG F+ + +F Q NHS S GT+RG+H+
Sbjct: 6 LAVSGAFVFTPPVFEDDRGLFTSPFQEPAFVAALGHPLFPVAQSNHSRS-RRGTVRGIHY 64
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
P AK V C GR DI VDIR SPTYG W S + +Y P G H F+
Sbjct: 65 TVTPPGVAKYVYCARGRAIDIVVDIRVGSPTYGRWDSSVLDPEGFRAMYFPVGVGHAFVA 124
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
LE +T + Y ++ Y +H+ ++ D ++ + P+ + P +S +D P L Q+ +
Sbjct: 125 LEDDTVMSYMLSGSYEAQHEMSLSPLDPALGL--PIPQDVAPLLSARDTAAPLLEQVRA 181
>gi|319440778|ref|ZP_07989934.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium variabile DSM
44702]
Length = 228
Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats.
Identities = 59/182 (32%), Positives = 97/182 (53%), Gaps = 6/182 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ ++ + R F D RG F + + + + E LG Q N S S + G +RG+H+
Sbjct: 16 LPLSGTWVNTPRIFPDDRGTFLEWFRADAVAEKLGYPLDLPQANLSTSVE-GVVRGIHYA 74
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+AGRI D+ VD+RR S T+G + +E+SA N +Y+P G HGF+
Sbjct: 75 DVPPGQAKYVTCVAGRILDVIVDLRRGSTTFGRHIVVELSAENRRGLYLPVGMGHGFVVP 134
Query: 120 EMN--TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD--TILPSVSEKDQNLPFLNQI 175
E + V Y V++ Y+ + + GV D + I W + +S+KD++ P ++
Sbjct: 135 EGSGPATVCYLVSESYNPDAEHGVNPLDPKLGIDWSVAGLADSDLVLSDKDRDAPGYREV 194
Query: 176 DS 177
++
Sbjct: 195 EA 196
>gi|254496079|ref|ZP_05108980.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Legionella drancourtii
LLAP12]
gi|254354721|gb|EET13355.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Legionella drancourtii
LLAP12]
Length = 166
Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats.
Identities = 65/145 (44%), Positives = 94/145 (64%), Gaps = 5/145 (3%)
Query: 22 SQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIA 80
++++ + E G FVQDNHS S +RGLH+Q AQ KLVR +AG +FD+A
Sbjct: 1 MESFNQRRFDEAVGYPVQFVQDNHSRSAK-NVLRGLHYQIK-QAQGKLVRVVAGEVFDVA 58
Query: 81 VDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSG 140
VD+RRNSPT+G WV ++A N Q++IP GFAHGF+ L + E++YK TDF++ E++
Sbjct: 59 VDVRRNSPTFGQWVGEILTAKNYKQLWIPEGFAHGFVVLSDSAELLYKTTDFWAPEYEQC 118
Query: 141 VAWQDKSIDITWPLLDTILPSVSEK 165
+AW D + I WP +P +S+K
Sbjct: 119 IAWDDPELAIAWPFAG--MPQLSKK 141
>gi|86151976|ref|ZP_01070189.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni subsp.
jejuni 260.94]
gi|56783469|emb|CAI38722.1| putative nucleotidyl-sugar epimerase [Campylobacter jejuni]
gi|85841084|gb|EAQ58333.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni subsp.
jejuni 260.94]
Length = 209
Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats.
Identities = 66/187 (35%), Positives = 101/187 (54%), Gaps = 26/187 (13%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I+K + D RG+F + + + +E+G++ +Q NHS + G+IRG+H+Q PP
Sbjct: 11 IEGVYIIKPKPICDERGYFERYFCTNDFEEIGMKKPIIQINHSKTIGKGSIRGMHYQIPP 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ + K+VRC+ G I D+A+DIR+NSPT+ + S+E++ N +YIP GFAHGF L
Sbjct: 71 FCETKIVRCLKGSILDVAIDIRKNSPTFLQYFSIELNEVNNKYLYIPEGFAHGFQVLSDE 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSI-----------------------DITWPLLDTIL 159
E++Y VT ++ D G+ DK+I I WPL
Sbjct: 131 AEILYLVTQEFNSSADRGINPFDKAIISTNNFYQRNRHNVFENYKKKGGGIKWPLGSGN- 189
Query: 160 PSVSEKD 166
+S KD
Sbjct: 190 --ISRKD 194
>gi|284997405|ref|YP_003419172.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
L.D.8.5]
gi|284445300|gb|ADB86802.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
L.D.8.5]
Length = 178
Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats.
Identities = 66/172 (38%), Positives = 98/172 (56%), Gaps = 10/172 (5%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V ++K + F D+RG+F + + K++G+ Q N SFS G +RGLH+Q PP
Sbjct: 11 GVLLIKPKVFPDNRGYFKEIFKESDFKKVGIPTPL-QINISFS-RYGVVRGLHYQLPPKE 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q K+V I G+I D+AVDIR+ P++G +VS E+S N ++IP GFAHGF LE +T
Sbjct: 69 QGKIVTVIKGKILDVAVDIRKG-PSFGKYVSAELSEYNHYMLWIPPGFAHGFQALESSTI 127
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
V + + YS H+ + + I WP+ D +SEKD P L + +
Sbjct: 128 VYFITHNEYSPTHERCINYS----MIDWPIKD---IIISEKDSKCPPLEKAE 172
>gi|209551787|ref|YP_002283704.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537543|gb|ACI57478.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 180
Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats.
Identities = 63/172 (36%), Positives = 102/172 (59%), Gaps = 3/172 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ +++ D RG F++T+ ++ + GL V+ Q N S + GT+RG+H+Q P
Sbjct: 8 VSGAFVVEVDARSDDRGMFARTFDAQTFADRGLVPVYPQCNVSQNHRRGTLRGMHYQAKP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ KLVR GR+FD+A+D+R +SP+Y W S+E+ A + YIP G AHGF+TLE +
Sbjct: 68 RPEIKLVRATRGRVFDVALDLRPDSPSYLQWASVELDAASCNAFYIPAGCAHGFLTLEDD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
E+ Y++++ Y E GV W D + I WP ++ +SE+D L +Q
Sbjct: 128 CELFYQMSETYVPELARGVRWDDPAFSIAWPFAPSV---ISERDAVLESYSQ 176
>gi|88855648|ref|ZP_01130311.1| dTDP-4-dehydrorhamnose 3,5-epimerase [marine actinobacterium
PHSC20C1]
gi|88814972|gb|EAR24831.1| dTDP-4-dehydrorhamnose 3,5-epimerase [marine actinobacterium
PHSC20C1]
Length = 203
Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 3/175 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ + ++F D RG F + Y L+E+ G Q N S S G +RG+H+
Sbjct: 6 LSVPDSYEITPKQFADDRGVFLEWYRFDKLEEVVGHPLDLRQANTSVS-QRGVVRGIHYA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P Q K V GR D VDIR SPTYG W S+ + A + +Y+ G H F+ L
Sbjct: 65 DVPPGQGKYVTVTHGRGIDFVVDIRVGSPTYGQWDSVILDAVDRRAVYVAEGLGHAFIAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ + Y V+D Y + + D I + +P + +S KD+ P L +
Sbjct: 125 TDDATLTYLVSDVYKPGAEHDINVLDPEIGLVFP-PELGDLVLSPKDKIAPTLAE 178
>gi|296159373|ref|ZP_06842198.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. Ch1-1]
gi|295890357|gb|EFG70150.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. Ch1-1]
Length = 183
Score = 207 bits (529), Expect = 5e-52, Method: Composition-based stats.
Identities = 60/176 (34%), Positives = 97/176 (55%), Gaps = 5/176 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V++++ F D G+ +++S +L FVQD HS S G +RGLH+Q
Sbjct: 10 LPEVKLIEPEVFCDEFGFCFESFSEDEFIADLSPAFQFVQDRHS-SAVHGVLRGLHYQVQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q +L+R + G +F +AVD+R NSP +G W ++SA N QI++P GFAHGF+ L
Sbjct: 69 -RPQGRLMRVVVGEVFGVAVDVRLNSPNFGKWCGADLSAANHRQIWVPPGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E ++K T+++ E + + W+D I I WP+ P + KD L + ++
Sbjct: 128 VAECLWKTTEYWFPELERCILWRDPDIGIEWPI--DFEPILGTKDAAGRRLYEAEN 181
>gi|15131509|emb|CAC48377.1| putative 3,5 epimerase [Amycolatopsis balhimycina]
Length = 205
Score = 207 bits (529), Expect = 5e-52, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHF 58
+ ++ R F D RG F + + E G Q NHS S G +RG+H+
Sbjct: 6 LAVDGAIEFTPRVFPDDRGLFVSPFQEEAFAEARGGPLFRVAQTNHSMS-KRGVVRGIHY 64
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
P AK V C G+ DI VDIR SPT+G W ++ + + +Y P G H F+
Sbjct: 65 TMTPPGTAKYVYCARGKALDIVVDIRVGSPTFGRWDAVLLDQRDHRAMYFPVGVGHAFVA 124
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
LE +T + Y ++ Y ++ ++ D ++ + P+ + P +SE+DQ L +
Sbjct: 125 LEDDTAMWYLLSTAYVARNELALSVLDPALGL--PIDADVDPILSERDQVAVTLAEA 179
>gi|323474312|gb|ADX84918.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus REY15A]
Length = 178
Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats.
Identities = 63/172 (36%), Positives = 97/172 (56%), Gaps = 9/172 (5%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V ++K + F D+RG+F + + K++ + Q N SFS G +RGLH+Q PP
Sbjct: 11 GVLLIKPKVFPDNRGYFKEIFKESDFKKMNISSPL-QVNVSFS-KAGVVRGLHYQLPPKE 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q K+V + GRI D+AVDIR+ S ++G +V E+S +N ++IP GFAHGF LE +T
Sbjct: 69 QGKIVTVLKGRIIDVAVDIRKKSKSFGKYVYAELSEDNHYMLWIPPGFAHGFQALEESTV 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + + YS H+ + + I WP+ I +SEKD P L + +
Sbjct: 129 LYFVTHNEYSPPHERCINYT----MIDWPIKSVI---ISEKDAKCPPLEKAE 173
>gi|77457739|ref|YP_347244.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas fluorescens
Pf0-1]
gi|77381742|gb|ABA73255.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas
fluorescens Pf0-1]
Length = 186
Score = 207 bits (527), Expect = 8e-52, Method: Composition-based stats.
Identities = 60/174 (34%), Positives = 102/174 (58%), Gaps = 3/174 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + + ++ ++FED RG F++ + LK G + Q NHS + + G++RGLH+Q
Sbjct: 9 LPLAGLFSVQHKRFEDQRGHFARLFCEGSLKAFGSEFHIRQINHSCTREKGSVRGLHYQN 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AKL+ C+ G ++D+AVD+R +S T+ W + + A +G + IP GFAHGF TL
Sbjct: 69 ANAPEAKLITCLRGEVWDVAVDLRPDSETFLHWHAEHLKAGDGRSLLIPAGFAHGFQTLT 128
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ E++Y + Y+ EH+ G++ D + I WPL +S +D + P L+Q
Sbjct: 129 EDAELLYLHSADYAPEHEGGLSVNDPRLAIAWPLPVNN---LSARDSSHPALDQ 179
>gi|154253788|ref|YP_001414612.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Parvibaculum lavamentivorans
DS-1]
gi|154157738|gb|ABS64955.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Parvibaculum lavamentivorans
DS-1]
Length = 184
Score = 207 bits (527), Expect = 8e-52, Method: Composition-based stats.
Identities = 63/175 (36%), Positives = 99/175 (56%), Gaps = 3/175 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ +++L R+ D RGW + + + L G Q N + + + GT+RG+HFQ PP
Sbjct: 12 LAGLKLLHRRRMGDDRGWLERLFCADELASAGWVWPIAQINRTLTVNKGTVRGMHFQHPP 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ +AKLV C+ G + D+AVD+R+NSPTY W +S N + IP GFAHGF TL +
Sbjct: 72 HEEAKLVTCLRGEVLDVAVDLRKNSPTYLGWHGEILSGKNAASLLIPPGFAHGFQTLTSD 131
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E+ Y + Y+ + + GV D +I I WPL + SE+D+N + + ++
Sbjct: 132 VEMFYVHSAPYAPQAEDGVRADDPAIAIAWPLE---IAERSERDRNFSLVEEREA 183
>gi|254774045|ref|ZP_05215561.1| hypothetical protein MaviaA2_05144 [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 190
Score = 207 bits (527), Expect = 8e-52, Method: Composition-based stats.
Identities = 58/170 (34%), Positives = 94/170 (55%), Gaps = 3/170 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I+ D RG+ +++ ++ GL Q N F++ GT+RGLH P
Sbjct: 7 KVAGVTIIDLELRRDHRGFTWRSFCARDFAAHGLNLDVAQTNIVFNYTRGTVRGLHRTVP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+A+A L+RC G I AVD+R +S TYG V +E++A++ +++P AHGF TL
Sbjct: 67 PHAEATLLRCTRGAIVAAAVDVRPDSLTYGDHVMIELTADDHRTLFLPPYVAHGFQTLVD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPF 171
+TEV Y + ++ + G+ W D +TWP+ T+ +SE+D + P
Sbjct: 127 DTEVTYHTSGRHAAAEEQGLRWDDPEFGVTWPIPVTV---ISEQDASWPS 173
>gi|91200296|emb|CAJ73341.1| strongly similar to dTDP-4-dehydrorhamnose 3,5-epimerase
[Candidatus Kuenenia stuttgartiensis]
Length = 183
Score = 207 bits (527), Expect = 8e-52, Method: Composition-based stats.
Identities = 61/151 (40%), Positives = 95/151 (62%), Gaps = 4/151 (2%)
Query: 19 GWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFD 78
G+F++T+ K + GL VQ N S++ GT+RG+HFQ P+ +AKL+ CI G I+D
Sbjct: 24 GFFARTFCRKEFESHGLNPDLVQCNISYNKKKGTLRGMHFQIAPHEEAKLISCIKGSIYD 83
Query: 79 IAVDIRRNSPTYGCWVSLEISANNG-LQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEH 137
+ +D+R +SPTYG W + +++A +Y+P FAHGF TLE +T V Y++++FY E
Sbjct: 84 VIIDMRSDSPTYGQWTAFKLTATVHFTMLYVPESFAHGFQTLEDDTLVFYQMSEFYHPES 143
Query: 138 DSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
G+ W D I WP+ I +S+KD++
Sbjct: 144 ARGIRWDDPMFAIQWPIHSRI---LSDKDKS 171
>gi|28394167|dbj|BAC57040.1| dTDP-4-keto, 6-deoxyglucose-3-epimerase [Micromonospora
griseorubida]
Length = 233
Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats.
Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 5/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I+ + R+ D RG F + Y LL +G F Q N S S G IRG+HF
Sbjct: 6 LSIDGAWEVTPRQHGDPRGVFLEWYRFDLLAHGVGHPLRFGQANLSVSAR-GVIRGIHFT 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G + D+ VD+R SPT+G W ++ + +Y+ G HGF L
Sbjct: 65 DVPPGQAKYVTCVRGAVLDVVVDVRVGSPTFGRWEAVRLDDTERRAVYLAEGLGHGFCAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ V Y + + + + + D + I WP +S +D+N P L Q+
Sbjct: 125 TDDATVTYLCSTTHDPQAERQLHPLDPMLGIEWP---DGPRLLSARDENAPDLGQL 177
>gi|84496974|ref|ZP_00995828.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Janibacter sp. HTCC2649]
gi|84383742|gb|EAP99623.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Janibacter sp. HTCC2649]
Length = 197
Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 83/178 (46%), Gaps = 4/178 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I ++ R+F D RG F +++ LL + G + +Q N S S GT+RG+HF
Sbjct: 6 LAIEGAFVVTPRQFPDDRGVFLESFRGDLLAQHLGHRPDIIQTNVSVSSR-GTVRGVHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P Q K + +AG + D VD+R SPT+G + + +Y+ G H F L
Sbjct: 65 DIPPGQGKFITVLAGSLIDFIVDLREGSPTFGLVEQVLLDTVKRRAVYLTEGLGHAFCAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E T +Y T Y+ + G+ D I + + + ++S KD+ P L +
Sbjct: 125 EDRTTAMYLCTATYNPATEHGIHPLDPEIGLQ--IPTDVETTLSAKDKAAPTLRAARA 180
>gi|23004340|ref|ZP_00047721.1| COG1898: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Magnetospirillum magnetotacticum MS-1]
Length = 198
Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 6/180 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + L R+ D RG F + +++ L+E G Q N S S G +RG+H+
Sbjct: 6 LTVPGAWELLPRQHADDRGVFLEWFTAAALREATGRDLDLAQANASVS-RAGVVRGIHYA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+AG + D+ VD+R SP +G W ++ + A+ +++P G H FM L
Sbjct: 65 DVPPGQAKYVTCVAGSVLDVVVDLRVGSPAFGRWDAVLLDAHERRAVFLPEGVGHAFMAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDT----ILPSVSEKDQNLPFLNQI 175
E V+Y + Y+ E + GV D + I WP ++PS S KD P L +
Sbjct: 125 EDGATVVYLCSSGYAPEREHGVDPTDPELAIEWPATGPDGRALVPSFSAKDAAAPSLREA 184
>gi|328887228|emb|CCA60467.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces venezuelae ATCC
10712]
Length = 183
Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 6/175 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGL-QDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ + + + D RG+F +T+ + +++ +GL FVQD+ S S G +RGLH +
Sbjct: 8 EISGAFLFEPTPYADERGFFCRTFDADVVRSVGLDPGAFVQDSVSRSVR-GVLRGLHLRS 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AKLVRC GRIFD+ VD+R +SPTY + E+S +Y+P G AHGF L
Sbjct: 67 G-AGEAKLVRCSYGRIFDVVVDLRADSPTYRNVATFELSGETQRTLYVPAGCAHGFQALT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ Y++ + D +A+ D + I WPL T S+S +D+ P L +
Sbjct: 126 DTADTSYRIDRPHDPAEDVTIAFDDPELAIPWPLPAT---SMSPRDREAPRLAEA 177
>gi|251797830|ref|YP_003012561.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. JDR-2]
gi|247545456|gb|ACT02475.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Paenibacillus sp. JDR-2]
Length = 182
Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 59/173 (34%), Positives = 100/173 (57%), Gaps = 3/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V +++ D+RG+F++ + KE GL++ F Q + S + GTIRG+HFQ
Sbjct: 7 SLAGVYLIEPEPISDNRGFFARAFCRNQFKERGLEENFQQWSISSNIHKGTIRGMHFQNL 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+A+ KL++CI G ++D+ VDIR++S TY W + ++ N +YIP G+AHGF TLE
Sbjct: 67 PFAENKLIQCIQGSVYDVVVDIRKDSKTYKQWEAFRLTGENHHMLYIPPGYAHGFQTLEP 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
++ + Y ++ Y +G + D + I W P +SE+D +L +
Sbjct: 127 HSTLYYHMSGIYDPSVQNGARYDDPAFHIKW---VYDNPVISERDAHLAPWSD 176
>gi|2246638|gb|AAB63046.1| putative epimerase [Streptomyces peucetius]
Length = 208
Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 5/179 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV--QDNHSFSFDCGTIRGLHF 58
+ + + F D RG F + +F Q NHS S G +RG+H+
Sbjct: 6 LAVQGAYTFEPEVFPDERGLFVSPFREDAFTAAVGHPLFPVRQTNHSRS-RRGVVRGVHY 64
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
P AK V C GR DI VD+R SPTYG W ++E+ +Y P G H F+
Sbjct: 65 TVTPPGSAKYVYCARGRSLDIVVDVRVGSPTYGRWDAVELEPREFRAVYFPVGVGHAFVA 124
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
LE +T + Y ++ Y ++ V+ D ++ + P+ + P +S +D+ P L Q +
Sbjct: 125 LEDDTVMSYMLSGEYVQANELAVSVLDPALGL--PVPGDLEPLLSGRDRAAPPLEQARA 181
>gi|13541732|ref|NP_111420.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermoplasma volcanium GSS1]
gi|14325138|dbj|BAB60063.1| NDP-sugar epimerase [Thermoplasma volcanium GSS1]
Length = 179
Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 78/174 (44%), Positives = 105/174 (60%), Gaps = 8/174 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V + ++ED+RG+F + Y + + L FVQDNHSFS G IRGLHFQR
Sbjct: 9 EIPDVIHIVCNRYEDNRGYFEERYKASEFDRI-LHVRFVQDNHSFS-RRGVIRGLHFQRE 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KLV I GRI+D+AVD+R++S T+G WV +S N ++IP GFAHGF LE
Sbjct: 67 PMAQGKLVGVITGRIYDVAVDLRKDSVTFGKWVYRVLS--NNEMLWIPRGFAHGFQALED 124
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ V+YKV + +S +H+ G+ + D + I WP+ D P VSEKD L
Sbjct: 125 -SHVVYKVDNEFSRQHEDGIIFNDPDLAIDWPIKD---PIVSEKDIKLGTFRNF 174
>gi|83309148|ref|YP_419412.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzyme
[Magnetospirillum magneticum AMB-1]
gi|82943989|dbj|BAE48853.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzyme
[Magnetospirillum magneticum AMB-1]
Length = 194
Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats.
Identities = 64/164 (39%), Positives = 93/164 (56%), Gaps = 5/164 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ V IL+ R+F D RG F S ++ G+ FVQ +HS S GT+RGLH Q P
Sbjct: 19 LSDVLILEPRQFRDERGVFFDALSPEICAAAGMSAAFVQHSHSVS-RKGTVRGLHIQL-P 76
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KLVR + G +FD+ D+R SPT+G + + +SA N +++ G AHGFM LE +
Sbjct: 77 RTQGKLVRVVRGSVFDVVADVRPQSPTFGRHIHVRLSAENRRMLWVGHGLAHGFMALEDD 136
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+E+IY + D Y + W D + I WP + P++S KD
Sbjct: 137 SEMIYALDDVYDPGGQWTIRWNDPDLAIGWP---DLEPNLSPKD 177
>gi|302555841|ref|ZP_07308183.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces
viridochromogenes DSM 40736]
gi|302473459|gb|EFL36552.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces
viridochromogenes DSM 40736]
Length = 183
Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats.
Identities = 63/174 (36%), Positives = 96/174 (55%), Gaps = 6/174 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGL-QDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + + + D RG+F +T+ + +++ +GL D FVQD+ S S G +RGLH +
Sbjct: 9 IAGAYLFEPTPYADERGFFCRTFDADVVRSVGLAPDAFVQDSVSRSVR-GVLRGLHLRSG 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AKLVRC G+IFD+ VD+R +SPTY S E+S +YIP G AHGF L
Sbjct: 68 -KGEAKLVRCSYGQIFDVVVDLRPDSPTYRNVASFELSGETQTTLYIPAGCAHGFQALTE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ Y++ + D +A+ D + I WPL T S+S +D+ P L ++
Sbjct: 127 TADTSYRIDRPHDPAEDVTIAFDDPELAIPWPLPAT---SMSRRDREAPSLAEV 177
>gi|27753583|dbj|BAC55217.1| 3,5-epimerase [Streptomyces sp. TP-A0274]
Length = 206
Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats.
Identities = 55/177 (31%), Positives = 83/177 (46%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHF 58
+ + R F D RG F Y E +F Q NHS S G +RG+H+
Sbjct: 6 LTVEGAVEFTPRVFPDDRGKFVSPYQEAAFTEAHGAPLFPVAQTNHSVS-RRGVVRGVHY 64
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
P AK V C GR DI VDIR SPT+G W ++ + + Y P G H F+
Sbjct: 65 TATPPGTAKYVYCARGRALDIVVDIRVGSPTFGHWDAVLMDQLDHRASYFPVGVGHAFVA 124
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
LE +T + Y ++ Y EH+ ++ D ++ + P+ + P +SE+D+ L +
Sbjct: 125 LEDDTVMSYMLSGSYVAEHELSLSVLDPALGL--PIPTDLEPILSERDRAAVTLAEA 179
>gi|182434422|ref|YP_001822141.1| putative epimerase [Streptomyces griseus subsp. griseus NBRC 13350]
gi|178462938|dbj|BAG17458.1| putative epimerase [Streptomyces griseus subsp. griseus NBRC 13350]
Length = 204
Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats.
Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHF 58
M I F D RG F +Y + +F Q + S S G +RG+H+
Sbjct: 6 MTIEGAVEFTPAVFPDDRGDFLSSYQESDFRTATGTSLFPVAQASFSRSRS-GVMRGVHY 64
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
P K V C G D+ VD+R SPT+G W S+ + +Y+P G H F+
Sbjct: 65 TATPPGCEKYVTCPRGSALDVVVDLRVGSPTFGTWDSVVLDQETHRAVYLPQGVGHLFLA 124
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
LE +T + Y ++ Y ++ ++ D + + P+ +S +D+ P L +
Sbjct: 125 LEDDTVMSYLLSREYVPGNERAISPFDPRLAL--PVPGPSDVMISRRDREAPLLAEA 179
>gi|307730225|ref|YP_003907449.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. CCGE1003]
gi|307584760|gb|ADN58158.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. CCGE1003]
Length = 183
Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats.
Identities = 58/176 (32%), Positives = 96/176 (54%), Gaps = 5/176 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V++++ F D G+ +++S+ ++ FVQD H + G +RGLH+Q
Sbjct: 10 LPEVKLIEPEVFGDESGFCYESFSADEFVDDVARGFNFVQDRHLRAVH-GVLRGLHYQVQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q +L++ + G IFD+AVD+R NSP +G W +SA N Q+++P GFAHGF+ L
Sbjct: 69 -RPQGRLMQVVVGEIFDVAVDVRLNSPNFGKWCGAYLSAENHRQVWVPPGFAHGFVVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E ++K T+++ E + + W D I I WP+ P V KD L + ++
Sbjct: 128 VAECLWKATEYWFPELERCILWSDPDIGIEWPI--DFEPIVGPKDAAGRRLYEAEN 181
>gi|188580041|ref|YP_001923486.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium populi
BJ001]
gi|179343539|gb|ACB78951.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium populi
BJ001]
Length = 177
Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats.
Identities = 60/170 (35%), Positives = 95/170 (55%), Gaps = 3/170 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + + + D RG+F++T+ + GL F Q + SF+ GT+RG+HF R
Sbjct: 6 LALPGLFRVAPEPHADERGFFARTHCEETFTARGLVGRFAQSSVSFNHRRGTVRGMHFSR 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+A+ KLVRC AG I D +D+R +SPTY ++ +SA N +YIP G AHGF TL
Sbjct: 66 APHAETKLVRCTAGAIHDAVIDLRPDSPTYRRTAAVRLSAANRHALYIPAGLAHGFQTLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
+ E++Y + + GV W D + +TWP ++ +S++D+ P
Sbjct: 126 DDAEILYMIDLPFVASAADGVRWDDPAFALTWPEPVSV---ISDRDRAFP 172
>gi|89889756|ref|ZP_01201267.1| dTDP-4-dehydrorhamnose 3, 5-epimerase [Flavobacteria bacterium
BBFL7]
gi|89518029|gb|EAS20685.1| dTDP-4-dehydrorhamnose 3, 5-epimerase [Flavobacteria bacterium
BBFL7]
Length = 178
Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 68/173 (39%), Positives = 98/173 (56%), Gaps = 3/173 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGL-QDVFVQDNHSFSFDCGTIRGLHFQR 60
++ I+K F D RG+FS + + FV N SFS G +RGLH Q+
Sbjct: 7 SLKDCYIIKPPVFGDDRGYFSIRHDKNAFAKAFPQHPPFVLHNESFSS-YGVLRGLHLQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
AQAKLVRC+ G+I D+AVD R +SPTY S+E+S +N LQ+ +P GF HGF L
Sbjct: 66 GNAAQAKLVRCVQGKILDVAVDFRPDSPTYLQHFSIELSGDNHLQLLVPRGFLHGFSVLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
V Y+V + Y E + G+ + D +++I W + T + +SEKD+ L +L
Sbjct: 126 ETAIVNYQVDNSYQPETEFGIRYDDPTLNIDWQIPTTDI-QLSEKDEKLGYLK 177
>gi|296169862|ref|ZP_06851476.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295895539|gb|EFG75239.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 190
Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 66/170 (38%), Positives = 93/170 (54%), Gaps = 3/170 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I+ D RG+ S+++ + GL Q N F++ GT+RGLH + P
Sbjct: 7 QVAGVTIIDLEPQCDHRGFSSRSFCADEFASRGLAFDVTQTNIFFNYTRGTVRGLHHRVP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYAQ +LVRC G I +AVDIR S TYG +E+SA+N +++P AHGF TL
Sbjct: 67 PYAQTQLVRCTRGAIAAVAVDIRPGSQTYGDHAMVELSADNYRALFLPPFVAHGFQTLVD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPF 171
NTEV Y+V+ + + G W D I WPL T+ +SE+D + P
Sbjct: 127 NTEVSYQVSGASAPSDEQGFHWNDPEFGIVWPLPVTV---ISEQDASWPS 173
>gi|70607435|ref|YP_256305.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus acidocaldarius DSM
639]
gi|68568083|gb|AAY81012.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus acidocaldarius DSM
639]
Length = 184
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 72/181 (39%), Positives = 105/181 (58%), Gaps = 11/181 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V +++T K+ED RG + + D VQ N+S+S G IRGLH+Q
Sbjct: 8 DIPDVLVIETDKYEDERGLLMELFKRSNF---IFIDSIVQVNYSYS-KKGVIRGLHYQLK 63
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLV I G+I+D+AVDIRR SP YG +VS + G ++IP GFAHGF LE
Sbjct: 64 PKEQGKLVTVIDGKIYDVAVDIRRGSPWYGKFVSEIL--VPGKMLWIPPGFAHGFQALE- 120
Query: 122 NTEVIYKVT-DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
N+ V+Y ++ + +S ++G+ + D I + WP+ + P VS+KD P L + + FE
Sbjct: 121 NSHVVYFISGNDFSPPSEAGIRYDDPDIGVNWPIQN---PIVSQKDLRWPSLKECKNNFE 177
Query: 181 Y 181
Y
Sbjct: 178 Y 178
>gi|37520039|ref|NP_923416.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gloeobacter violaceus PCC
7421]
gi|35211031|dbj|BAC88411.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gloeobacter violaceus PCC
7421]
Length = 184
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 57/174 (32%), Positives = 99/174 (56%), Gaps = 5/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V +++ +E S G+F ++Y + G+ FVQ+ S S GT+RGLH+Q
Sbjct: 8 LPGVVVIEPAVYEQSCGYFFESYQRQKFAAAGISVSFVQEYRSRSAQ-GTLRGLHYQLH- 65
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
QA+L + G +F +A+D+R+ SP++G + +SA N Q+++P GFAHG + L
Sbjct: 66 RPQARLYTALHGELFAVAIDVRKGSPSFGQSAGVLLSAANKQQLFVPRGFAHGLLVLSQK 125
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E +YK +F+ + + GV W D ++ I W + + P +S +D+ L++ID
Sbjct: 126 AEFMYKCDEFFYPQDERGVLWSDPALGIAWRIEE---PVLSARDRCNLPLSRID 176
>gi|30795018|ref|NP_851468.1| putative NDP-4-keto-6-deoxyhexose 3,5-epimerase [Streptomyces
rochei]
gi|30698391|dbj|BAC76504.1| putative NDP-4-keto-6-deoxyhexose 3,5-epimerase [Streptomyces
rochei]
Length = 209
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 6/186 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + F DSRG F TY E G Q S S G +RG+HF
Sbjct: 17 LAVEGAYEFTPTVFPDSRGLFVTTYQQPQFTETTGHSFPVFQTCQSHS-RRGVVRGVHFT 75
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P AK V C GR D VD+R SPT+G W ++++ + Y+P G H F+ L
Sbjct: 76 STPPGMAKHVYCGRGRALDFVVDLRVGSPTFGKWDTVQLGGESFRSTYLPVGVGHVFVAL 135
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN---QID 176
E +T ++Y ++ Y E++ V+ D ++ + + D + P +SE+D P L +
Sbjct: 136 EDDTTMVYLMSGPYVAENELAVSPLDPALGLPVRI-DDVEPVLSERDVAAPSLAGALEAG 194
Query: 177 SPFEYD 182
+Y+
Sbjct: 195 ILPDYE 200
>gi|126741343|ref|ZP_01757019.1| CDP-4-dehydro-6-deoxy-D-glucose 3-epimerase [Roseobacter sp.
SK209-2-6]
gi|126717548|gb|EBA14274.1| CDP-4-dehydro-6-deoxy-D-glucose 3-epimerase [Roseobacter sp.
SK209-2-6]
Length = 184
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 63/176 (35%), Positives = 105/176 (59%), Gaps = 3/176 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + V + + ED+RG F + +K+L E GL +VQ N S + GT+RG+H+Q
Sbjct: 9 LPLPGVFHYQPQLHEDNRGSFGRLSCAKMLDEAGLNSTWVQSNLSRTATRGTLRGMHYQT 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+A+ KL+ C++G+++D+ VD+R +SP+Y W S+ + +YIP G AHGF +L
Sbjct: 69 PPFAEVKLLTCLSGQVYDVLVDLRPSSPSYLQWTSIVLEGARADTLYIPAGIAHGFQSLS 128
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + Y + +S + +G++++D I I W L T +SE+D LPFL+ I
Sbjct: 129 DDVTLHYSHSQPFSPAYQAGISYRDPQIAIQWELPVT---LLSERDAALPFLSDIK 181
>gi|209967225|ref|YP_002300140.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Rhodospirillum
centenum SW]
gi|209960691|gb|ACJ01328.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Rhodospirillum
centenum SW]
Length = 195
Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats.
Identities = 67/173 (38%), Positives = 97/173 (56%), Gaps = 4/173 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I R+++ + D RG F++T+ + + G+ FVQ N S + GT+RG+HFQR P
Sbjct: 8 IAEARLVRLKAHRDDRGAFARTWCRQTFADAGIDFDFVQANWSVTRSRGTVRGMHFQRAP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+A++KLVR GR+ D+ VD+R SPT G SLE+ + +YIP G AHGF TL +
Sbjct: 68 HAESKLVRITRGRVHDVIVDLRAGSPTRGRLHSLELGEGDDTMLYIPAGVAHGFQTLTDD 127
Query: 123 TEVIYKV-TDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
V Y + + Y E+ G D ++ I WPL VS+KD + P L Q
Sbjct: 128 VTVEYFMGGEPYRPEYYDGFRHDDPAVAIRWPLPPGP---VSDKDLSWPPLAQ 177
>gi|296126188|ref|YP_003633440.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brachyspira murdochii DSM
12563]
gi|296018004|gb|ADG71241.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brachyspira murdochii DSM
12563]
Length = 177
Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 65/170 (38%), Positives = 105/170 (61%), Gaps = 2/170 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I IL+ ED RG+F + + +K L++ L +Q N +++ GT+RG+H+Q+ P
Sbjct: 8 IEGSYILQNNYIEDERGYFLRMFDNKELEKYNLNFNLIQSNINYNKKVGTLRGMHYQKYP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y + K+VRC+ G+IFD+ DIR++SPTYG + S+E+S NG +YIP AHGF TLE +
Sbjct: 68 YPEIKIVRCLKGKIFDVIADIRKDSPTYGKYSSIELSEENGKMVYIPPYVAHGFQTLEDD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
T V Y ++ ++ + + W D + +I WP + ++EKD+N+P
Sbjct: 128 TIVAYFLSTYFVPDAYGYLRWNDLAFNIKWPECENR--IMNEKDKNIPDF 175
>gi|315937108|gb|ADU56116.1| hypothetical protein CA878-38 [uncultured organism CA878]
Length = 205
Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQ-DVFVQDNHSFSFDCGTIRGLHF 58
+ + R F D RG F + + + G Q NHS S G +RG+H+
Sbjct: 6 LVVEGAIEFTPRVFPDDRGLFISPFQEEAFVQAHGGPLFRVAQTNHSMS-KRGVVRGVHY 64
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
P AK V C G+ DI +D+R SPT+G W ++ + + +Y P G H F+
Sbjct: 65 TATPPGVAKYVYCARGKALDIVIDLRVGSPTFGRWDAVLMDQQDHRAMYFPVGVGHAFVA 124
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
LE +T + Y ++ Y + + ++ D ++ + P+ + P +S++D+ L +
Sbjct: 125 LEDDTVMSYMISGRYVAQDELALSALDPALGL--PIDAGMAPILSDRDRAAITLAEA 179
>gi|326774961|ref|ZP_08234226.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces cf. griseus
XylebKG-1]
gi|326655294|gb|EGE40140.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces cf. griseus
XylebKG-1]
Length = 204
Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats.
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHF 58
M I+ F D RG F +Y + +F Q + S S G +RG+H+
Sbjct: 6 MTIDGAVEFTPAVFPDDRGDFLSSYQESDFRTAMGTSLFPVAQASFSRSRS-GVMRGVHY 64
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
P K V C G D+ VD+R SPT+G W S+ + +Y+P G H F+
Sbjct: 65 TATPPGCEKYVTCPRGSALDVVVDLRVGSPTFGTWDSVVLDQETHRAVYLPQGVGHLFLA 124
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
LE +T + Y ++ Y ++ ++ D + + P+ +S +D+ P L +
Sbjct: 125 LEDDTVMSYLLSREYVPGNERAISPFDPRLAL--PVPGPSDVMISRRDREAPLLAEA 179
>gi|41407063|ref|NP_959899.1| hypothetical protein MAP0965c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41395414|gb|AAS03282.1| hypothetical protein MAP_0965c [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 190
Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats.
Identities = 58/170 (34%), Positives = 94/170 (55%), Gaps = 3/170 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I+ D RG+ +++ ++ GL Q N F++ GT+RGLH P
Sbjct: 7 KVAGVTIIDLELRRDHRGFTWRSFCARDFAAHGLNLDVAQTNIVFNYTRGTVRGLHRTVP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+A+A L+RC G I AVD+R +S TYG V +E++A++ +++P AHGF TL
Sbjct: 67 PHAEATLLRCTRGAIVAAAVDVRPDSLTYGDHVMIELAADDHRTLFLPPYVAHGFQTLVD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPF 171
+TEV Y + ++ + G+ W D +TWP+ T+ +SE+D + P
Sbjct: 127 DTEVTYHTSGRHAAAEEQGLRWDDPEFGVTWPIPVTV---ISEQDASWPS 173
>gi|222147495|ref|YP_002548452.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Agrobacterium vitis S4]
gi|221734485|gb|ACM35448.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Agrobacterium vitis S4]
Length = 187
Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 3/171 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + +L +F D RG+ S+ + + L G +Q N + + GT+RGLHFQ P
Sbjct: 12 IPGLTLLTRSRFGDERGFLSRLFCGEELAAFGWPGPVLQVNETGTVQKGTVRGLHFQHAP 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ + KLV C+ G I D+A+D+R+ S ++ V +E+S +N + IP GFAHGF L
Sbjct: 72 FGEWKLVTCVEGTILDVALDLRKGSSSFLQHVCVELSGDNCRSLLIPPGFAHGFQALSDT 131
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+IY + Y E + G+ QD I ITWPL +S +DQ+ P +
Sbjct: 132 VRMIYTHSAPYRAEAEGGLHPQDARIGITWPLPVE---RLSARDQSHPLIQ 179
>gi|58430753|dbj|BAD89171.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp.
139]
Length = 191
Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats.
Identities = 60/174 (34%), Positives = 93/174 (53%), Gaps = 6/174 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGL-QDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + + F D RG+F +T+ + +++ G+ D FVQD+ S S G +RG+H +
Sbjct: 9 IAGAFLFEPTPFADERGFFCRTFDADVVRSAGIDPDAFVQDSLSRSVR-GVVRGMHLRSG 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AKLVRC +GRIFD+ VD+R SPTY + E+S +Y+P G AHGF L
Sbjct: 68 -AGEAKLVRCSSGRIFDVVVDLRPGSPTYLGRATFELSGETQATLYVPAGCAHGFQALTE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ Y++ + D +A+ D + + WPL T SE+D+ P L +
Sbjct: 127 TADTSYRIDRPHDPAEDVTIAFDDPELAVPWPLPVTTT---SERDRKAPGLAEA 177
>gi|323525586|ref|YP_004227739.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. CCGE1001]
gi|323382588|gb|ADX54679.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. CCGE1001]
Length = 183
Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats.
Identities = 58/176 (32%), Positives = 96/176 (54%), Gaps = 5/176 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V++++ F D G+ +++S+ ++ FVQD H + G +RGLH+Q
Sbjct: 10 LPEVKLIEPEVFGDESGFCYESFSADEFVDDVARGFDFVQDRHLRAVH-GVLRGLHYQVQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q +L++ + G IFD+AVD+R NSP +G W +SA N Q+++P GFAHGF+ L
Sbjct: 69 -RPQGRLLQVVVGEIFDVAVDVRLNSPNFGKWCGAYLSAGNHRQVWVPPGFAHGFVVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E ++K T+++ E + + W D I I WP+ P V KD L + ++
Sbjct: 128 VAECLWKATEYWFPELERCIVWNDPDIGIEWPI--DFQPIVGAKDAAGRRLYEAEN 181
>gi|326385995|ref|ZP_08207619.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Novosphingobium
nitrogenifigens DSM 19370]
gi|326209220|gb|EGD60013.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Novosphingobium
nitrogenifigens DSM 19370]
Length = 149
Score = 204 bits (521), Expect = 4e-51, Method: Composition-based stats.
Identities = 74/145 (51%), Positives = 93/145 (64%), Gaps = 1/145 (0%)
Query: 36 QDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVS 95
FVQ+N S S GTIRGLHFQ P+AQ KLVRC+ G IFD+AVD+R SPTYG W
Sbjct: 3 PVEFVQENQSLSMAQGTIRGLHFQSEPFAQGKLVRCVEGAIFDVAVDLRHGSPTYGQWAG 62
Query: 96 LEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL 155
++A + Q++IP+GFAHGF TL T V YKVT +YS E+D G+AW D +++ WP
Sbjct: 63 ATLTAQDCNQLWIPSGFAHGFCTLVPQTVVAYKVTAYYSRENDLGLAWDDPDVNVAWP-D 121
Query: 156 DTILPSVSEKDQNLPFLNQIDSPFE 180
+S KDQ P L + S FE
Sbjct: 122 VADPTKLSAKDQVQPRLADLPSYFE 146
>gi|15897733|ref|NP_342338.1| dTDP-4-dehydrorhamnose 3,5 epimerase (rfbC-1) [Sulfolobus
solfataricus P2]
gi|6015644|emb|CAB57471.1| dTDP-4-dehydrorhamnose 3,5-epimerase (RfbD) [Sulfolobus
solfataricus P2]
gi|13814014|gb|AAK41128.1| dTDP-4-dehydrorhamnose 3,5 epimerase (rfbC-1) [Sulfolobus
solfataricus P2]
Length = 176
Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats.
Identities = 64/173 (36%), Positives = 101/173 (58%), Gaps = 11/173 (6%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V ++K + F D RG+F + + + + + VQ N SFS G +RGLH+Q P
Sbjct: 11 GVLLIKPKVFPDKRGFFLELFKATDFSKHNIPMP-VQVNMSFSVR-GVVRGLHYQITPKE 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLV G+I D+AVD+R++SPT+G + S E+S +N ++IP GFAHGF L ++
Sbjct: 69 QGKLVFVPKGKILDVAVDVRKSSPTFGKYTSAELSESNHHMLWIPPGFAHGFQAL-DDSL 127
Query: 125 VIYKVT-DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
V+Y VT + YS +H+ + + I WP+ + VS+KD+ P L++ +
Sbjct: 128 VVYFVTHNDYSPQHERCINYS----YIEWPIKE---IIVSDKDKQCPPLDKAE 173
>gi|254385131|ref|ZP_05000464.1| NDP-hexose-3-epimerase [Streptomyces sp. Mg1]
gi|194344009|gb|EDX24975.1| NDP-hexose-3-epimerase [Streptomyces sp. Mg1]
Length = 196
Score = 204 bits (520), Expect = 5e-51, Method: Composition-based stats.
Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 4/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I + D RG + + + ++ G Q N + S G +RG+H+
Sbjct: 4 LSIEGAWSQEPVIHSDHRGRSHEWFRGERFRQAFGHDFPVAQVNVAVS-HRGALRGIHYT 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK C+ G D+ VD+R SPT+G W + + A +Y+ G F++L
Sbjct: 63 EIPPGQAKYSVCVRGAGLDVIVDVRIGSPTFGRWEIVPMDAERNTAVYLTAGLGRAFLSL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ ++Y + Y+ E + V D + I WP I P +S++D+N P L +
Sbjct: 123 TDDATLVYLCSSGYAPEREHSVNPLDPDLGIVWPA--DIEPLLSDRDKNAPTLATAE 177
>gi|170694621|ref|ZP_02885773.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia graminis C4D1M]
gi|170140503|gb|EDT08679.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia graminis C4D1M]
Length = 183
Score = 204 bits (520), Expect = 5e-51, Method: Composition-based stats.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 5/176 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V++++ F D G+ +++S+ ++ FVQD H + G +RGLH+Q
Sbjct: 10 LPEVKLIEPEVFGDESGFCYESFSADEFMDDVARGFEFVQDRHLRAVH-GVLRGLHYQVQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q +L++ + G IFD+ VD+R SP +G W +SA N Q+++P GFAHGF+ L
Sbjct: 69 -RPQGRLMQVVVGEIFDVVVDVRLKSPNFGKWCGAYLSAENHRQVWVPPGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E ++K T+++ E + + W D I I WP+ P V KD L + ++
Sbjct: 128 VAECLWKATEYWFPELERCILWSDPDIGIEWPI--GFEPIVGAKDAGGRRLYEAEN 181
>gi|300932789|ref|ZP_07148045.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium resistens DSM
45100]
Length = 241
Score = 204 bits (520), Expect = 5e-51, Method: Composition-based stats.
Identities = 58/176 (32%), Positives = 90/176 (51%), Gaps = 3/176 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + R FED RG F + + ++ +LG Q N S S IRG+H
Sbjct: 30 LPIPGAWVYVPRVFEDDRGSFHEAFRAEQFTDKLGYPLNIAQSNLSRSG-ANVIRGIHLA 88
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAKLV C+AG + D+ VD+R SPTYG + + ++ N +++P G HG +
Sbjct: 89 EVPPGQAKLVTCVAGGVTDVLVDLRIGSPTYGKHLQVPLNEQNNFALFVPLGVGHGVASE 148
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ + Y VT+ Y E + G+ D ++ I WP+ + +SEKD P LN++
Sbjct: 149 QSGATLYYLVTEAYDPEREFGLHPFDATLSIDWPV-EQATAVLSEKDSTAPGLNEV 203
>gi|146341725|ref|YP_001206773.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Bradyrhizobium sp.
ORS278]
gi|146194531|emb|CAL78556.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase
(dTDP-4-keto-6-deoxyglucose 3,5-epimerase)
(dTDP-L-rhamnose synthetase), (rfbC-like)
[Bradyrhizobium sp. ORS278]
Length = 180
Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats.
Identities = 65/171 (38%), Positives = 89/171 (52%), Gaps = 3/171 (1%)
Query: 4 NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPY 63
+ R+++ D RG F++T+ +K + VQ N S + GT+RG+HFQR P
Sbjct: 9 SDARLIELTVRGDERGSFTRTWCAKTFAAEEIDFQPVQGNSSVTRHRGTVRGMHFQRAPK 68
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
A AK+VRC AG I D+ VD+R S T G + E+ + G +YIP GFAHGF TL +
Sbjct: 69 ADAKIVRCTAGLIHDVIVDVRPTSATRGEVYACELGPSTGRMLYIPAGFAHGFQTLTDDV 128
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
V Y + Y E G D I I WP T+ +S KD P L +
Sbjct: 129 TVEYLMGIDYVEELSDGFRHNDPLISIKWPGPVTV---LSAKDAAWPLLAE 176
>gi|170781065|ref|YP_001709397.1| putative dTDP-sugar epimerase [Clavibacter michiganensis subsp.
sepedonicus]
gi|169155633|emb|CAQ00751.1| putative dTDP-sugar epimerase [Clavibacter michiganensis subsp.
sepedonicus]
Length = 201
Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats.
Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 3/173 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + L + D RG F + Y ++E G Q N S S G +RG+HF
Sbjct: 6 LAVPDAYELTPIQRTDDRGVFLEWYRFDEIQEAVGHPLDLRQANMSVS-RRGVVRGVHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V+ ++G + D VDIR SPT+G W S+ ++ +YI G H F+ L
Sbjct: 65 DVPRGQAKHVKAVSGAVLDFIVDIRVGSPTFGQWDSVRLNTETHKAVYISEGLGHCFVAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ V Y V+D Y+ + G+ D + + +P + P +S KD P L
Sbjct: 125 TDDAAVTYLVSDVYNPGAEHGITPLDPELGLVFP-EEAGEPLLSPKDLEAPTL 176
>gi|118595001|ref|ZP_01552348.1| CDP-4-dehydro-6-deoxy-D-glucose 3-epimerase [Methylophilales
bacterium HTCC2181]
gi|118440779|gb|EAV47406.1| CDP-4-dehydro-6-deoxy-D-glucose 3-epimerase [Methylophilales
bacterium HTCC2181]
Length = 187
Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats.
Identities = 66/178 (37%), Positives = 101/178 (56%), Gaps = 6/178 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ ++I++ R DSRG+ S+ Y +K G Q N + ++ GT+RGLH+Q P
Sbjct: 12 LEGLKIVQRRTVNDSRGFLSRVYCAKEFAGHGFNKSVSQINQTLTYQKGTVRGLHYQLMP 71
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ + KLV C+ G IFD+AVD+R+ SPT+ W S +S N + IP GFAHGF +L N
Sbjct: 72 HTEIKLVSCVKGEIFDVAVDLRKGSPTFLHWHSEMLSEKNQRSMLIPEGFAHGFQSLTDN 131
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
E++Y + Y ++ + D + IT+PL T +SE+D+ P ID+ FE
Sbjct: 132 CELLYLHSKPYEKGSEAALNMNDSRLAITFPLSITD---ISERDRAHPM---IDNNFE 183
>gi|296116052|ref|ZP_06834672.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gluconacetobacter hansenii
ATCC 23769]
gi|295977406|gb|EFG84164.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gluconacetobacter hansenii
ATCC 23769]
Length = 182
Score = 204 bits (519), Expect = 7e-51, Method: Composition-based stats.
Identities = 71/169 (42%), Positives = 100/169 (59%), Gaps = 3/169 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+ + + D RG F + + L E G+ F+Q + S + GT+RGLHFQRP
Sbjct: 7 KIFGVQKITLPRHCDERGSFGRIFDQGYLLENGISCDFIQTSISRTSYAGTLRGLHFQRP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PYA+AKLV C+ G I+D+ D+R +SPTY + S +S ++ +YIP G AHGFMTL
Sbjct: 67 PYAEAKLVHCLRGEIYDVICDLRPDSPTYLLYESFYLSFSSNEMVYIPPGCAHGFMTLND 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
+ EV+Y ++ Y H SGV + D + I+WP T +SEKD N P
Sbjct: 127 DVEVLYAMSSIYMQSHASGVRYNDPRLGISWPRPVTY---ISEKDLNWP 172
>gi|312127312|ref|YP_003992186.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Caldicellulosiruptor
hydrothermalis 108]
gi|311777331|gb|ADQ06817.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caldicellulosiruptor
hydrothermalis 108]
Length = 202
Score = 204 bits (519), Expect = 7e-51, Method: Composition-based stats.
Identities = 72/181 (39%), Positives = 96/181 (53%), Gaps = 6/181 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I ED RG F + Y++ + L + + S IRGLHFQ PP
Sbjct: 10 IPGCFEFIPDIKEDQRGMFVKIYNTDFYSSILLNTSIKESYFTIS-HKNVIRGLHFQLPP 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y AK+V C+ G I D+ VD+R SPTYG + +SA +YIP G AHG+ L
Sbjct: 69 YEVAKIVCCVEGEIMDVVVDLREGSPTYGKYDIFYLSAEKSNILYIPEGLAHGYCVLSEK 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
VIY VT+ YS EHD+G+ W S+ I WP+ + P +SEKD+NLP +PF+Y
Sbjct: 129 AIVIYNVTNVYSKEHDTGIRWD--SVGIPWPVDN---PILSEKDKNLPEFKYFHTPFKYK 183
Query: 183 G 183
G
Sbjct: 184 G 184
>gi|80279139|gb|ABB52524.1| NDP-hexose-3-epimerase [Streptomyces sp. KCTC 0041BP]
Length = 196
Score = 204 bits (519), Expect = 7e-51, Method: Composition-based stats.
Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 4/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I + D RG + + + ++ G Q N + S G +RG+H+
Sbjct: 4 LSIEGAWSQEPVIHSDHRGRSHEWFRGERFRQTFGHDFPVAQVNVAVS-HRGALRGIHYT 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK C+ G D+ VD+R SPT+G W + + A +Y+ G F++L
Sbjct: 63 EIPPGQAKYSVCVRGAGLDVIVDVRIGSPTFGRWEIVPMDAERNTAVYLAAGLGRAFLSL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ ++Y + Y+ E + V D + I WP I P +S++D+N P L +
Sbjct: 123 TDDATLVYLCSSGYAPEREHSVNPLDPDLGIVWPA--DIEPLLSDRDKNAPTLATAE 177
>gi|302868467|ref|YP_003837104.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Micromonospora aurantiaca
ATCC 27029]
gi|315505157|ref|YP_004084044.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Micromonospora sp. L5]
gi|302571326|gb|ADL47528.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Micromonospora aurantiaca
ATCC 27029]
gi|315411776|gb|ADU09893.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Micromonospora sp. L5]
Length = 210
Score = 203 bits (518), Expect = 8e-51, Method: Composition-based stats.
Identities = 54/177 (30%), Positives = 82/177 (46%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHF 58
+ + R F D RG F + E +F Q NHS S G +RG HF
Sbjct: 10 LKVEGAVEFTPRVFPDDRGIFVSPFQETAFVEALGHPLFPVAQTNHSRS-RKGVVRGAHF 68
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
P AK V C G+ D VDIR SPT+G + + + +Y+P G AH F
Sbjct: 69 TLTPPGIAKYVYCARGKTIDFVVDIRVGSPTFGQFDQVLLDQEAFRAVYLPVGVAHAFAA 128
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
LE +T V Y ++D Y H+ V D ++++ PL + +S++D++ P + +
Sbjct: 129 LEDDTVVSYMLSDGYVEAHEKAVNVLDPALNL--PLPTGVERVLSDRDRSAPTIEEA 183
>gi|227829530|ref|YP_002831309.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
L.S.2.15]
gi|227455977|gb|ACP34664.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
L.S.2.15]
Length = 178
Score = 203 bits (518), Expect = 9e-51, Method: Composition-based stats.
Identities = 62/172 (36%), Positives = 97/172 (56%), Gaps = 9/172 (5%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V ++K + F D+RG+F + + +++ + Q N SFS G +RGLH+Q PP
Sbjct: 11 GVILIKPKAFPDNRGYFKEIFKESEFRKMNIPTPL-QANISFS-KPGVVRGLHYQLPPKE 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q K+V + GRI D+AVDIR+ S ++G +V E++ +N ++IP GFAHGF LE +T
Sbjct: 69 QGKIVTVMKGRIIDVAVDIRKKSKSFGKYVYAELNEDNHYMLWIPPGFAHGFQALEDSTV 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + + YS H+ + + I WP+ I VSEKD P L + +
Sbjct: 129 LYFVTHNEYSPHHERCINYT----MIDWPIKSVI---VSEKDAKCPPLERAE 173
>gi|297160277|gb|ADI09989.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces bingchenggensis
BCW-1]
Length = 221
Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 7/181 (3%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIR 54
M I + R D+RG F ++Y+ +L ++ G V +Q N+S S T+R
Sbjct: 1 MEIHETAVPDAYRIVPRHHTDARGSFFESYAYGQLARQTGHVFVPLQVNYSVSAR-NTLR 59
Query: 55 GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
G+H R P QAK V C+ G + D+ VD+R SPT+G + + + A+ G +Y+ G H
Sbjct: 60 GVHGVRLPPGQAKFVTCVRGALLDVVVDLRLGSPTFGAYDTNMLDADQGTAVYVAEGLGH 119
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
GF+ L +T + Y + Y + D ++ + W L T P +SEKD P L +
Sbjct: 120 GFVALTDDTCISYLCSTQYVPGTQIDLHPLDPALGLPWHLGLTDEPLISEKDARAPSLAE 179
Query: 175 I 175
Sbjct: 180 A 180
>gi|302557857|ref|ZP_07310199.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces griseoflavus
Tu4000]
gi|302475475|gb|EFL38568.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces griseoflavus
Tu4000]
Length = 183
Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats.
Identities = 62/174 (35%), Positives = 96/174 (55%), Gaps = 6/174 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGL-QDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + + + D RG+F +T+ +++++ GL D FVQD+ S S G +RGLH +
Sbjct: 9 ITGAYLFEPTPYADERGFFCRTFDAEVVRSAGLDPDAFVQDSLSRSVK-GVLRGLHLRSG 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AKLVRC GRIFD+ VD+R +SPTY + E+S +Y+P G AHGF L
Sbjct: 68 E-GEAKLVRCSYGRIFDVVVDLRPDSPTYLGRATFELSGETQATLYVPAGCAHGFQALTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ Y++ + D +A+ D + I WPL T S+S +D+ P L ++
Sbjct: 127 TADTSYRIDRPHDPAEDVTIAFDDPELAIPWPLPVT---SMSRRDREAPGLAEV 177
>gi|238927143|ref|ZP_04658903.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas flueggei ATCC
43531]
gi|238884925|gb|EEQ48563.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas flueggei ATCC
43531]
Length = 182
Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats.
Identities = 66/180 (36%), Positives = 93/180 (51%), Gaps = 6/180 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ ++ D RG F +T+ + + LGL F ++ S S CG +RGLHFQ PP
Sbjct: 9 LPGCLRIRPVVRADQRGIFIKTFHVEEFRRLGLPTSFAEEYFSVS-HCGVLRGLHFQTPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
K+V C G + D VD+R SPTYG + A G IYIP G AHGF L N
Sbjct: 68 MDHEKIVYCAQGEVLDAVVDLRCGSPTYGQHELFHLCAGEGTMIYIPKGMAHGFYVLSEN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
++Y+VT Y+ + D+GV W S I W + P +S +D P L++ SPF ++
Sbjct: 128 ALMMYQVTSVYAPDCDAGVRWD--SAGIPW---NAAHPILSARDALFPLLDEFVSPFVFE 182
>gi|332530450|ref|ZP_08406393.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hylemonella gracilis ATCC
19624]
gi|332040110|gb|EGI76493.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hylemonella gracilis ATCC
19624]
Length = 192
Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats.
Identities = 60/184 (32%), Positives = 98/184 (53%), Gaps = 11/184 (5%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + ++ ++ R D RG F++ + + L+ G + Q NHS S G +RGLH+Q+
Sbjct: 10 LPLAGLKRVQRRLRADERGVFARLFCADELRPAGWRWPIAQINHSLSRGRGLVRGLHYQQ 69
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISAN----NGLQIYIPTGFAHGF 116
P+ +AKLV C+ G ++D+AVD+R SPT+ W + +S +G + IP GFAHGF
Sbjct: 70 APHQEAKLVSCVRGEVWDVAVDLRPGSPTFLRWHAERLSPQASDTHGSALLIPPGFAHGF 129
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN----LPFL 172
L E+IY + Y+ + + G+ QD + ITWPL +S +D P
Sbjct: 130 QVLSDEAELIYCHSAPYAPQSEHGLPVQDARLAITWPLPVQG---LSARDAGFAPIAPDF 186
Query: 173 NQID 176
++
Sbjct: 187 AGVE 190
>gi|256829649|ref|YP_003158377.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfomicrobium baculatum
DSM 4028]
gi|256578825|gb|ACU89961.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfomicrobium baculatum
DSM 4028]
Length = 175
Score = 202 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 54/168 (32%), Positives = 92/168 (54%), Gaps = 3/168 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + ++ D+RG+F +T+ + G+ VQ + S + T+RG+H+Q P
Sbjct: 8 IGGLHQIEGEAHRDARGFFLRTWCREAFLAAGIDFFPVQTSLSANIRRHTLRGMHYQVSP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ KLVRC+ GRI D+ VD+R SPT ++ + ++ G ++IP G AHGFMTL
Sbjct: 68 ARERKLVRCLHGRILDVVVDLRDGSPTRLRHWAVNLCSDAGNALFIPEGCAHGFMTLTDG 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
V Y + ++ EH G+ W D ++ ++WP + +S +D++ P
Sbjct: 128 ALVEYMMDAPHAPEHARGLRWDDPALGLSWPARPVV---ISLRDRSWP 172
>gi|116250011|ref|YP_765849.1| dTDP-4-dehydrorhamnose 3,5-epimerase protein [Rhizobium
leguminosarum bv. viciae 3841]
gi|115254659|emb|CAK05733.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 167
Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats.
Identities = 62/160 (38%), Positives = 94/160 (58%), Gaps = 3/160 (1%)
Query: 10 KTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLV 69
+ D RG F++T+ ++ GL V+ Q N S + GT+RG+H+Q P + KLV
Sbjct: 2 EVDARSDDRGMFARTFDAQTFAAQGLVPVYPQCNVSQNHKRGTLRGMHYQAEPRPEIKLV 61
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKV 129
R GR+FD+A+D+R +SP+Y W S+E+ A YIP G AHGF+TLE + E+ Y++
Sbjct: 62 RATRGRVFDVALDLRPDSPSYLKWASVELDAIRHNAFYIPAGCAHGFLTLEDDCELYYQM 121
Query: 130 TDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
++ Y E GV W D + I WP +I ++E+D L
Sbjct: 122 SETYVPELARGVRWDDPAFSIAWPFTPSI---INERDAAL 158
>gi|11095239|gb|AAG29805.1| dTDP-4-keto-6-deoxyglucose 3,5-epimerase [Streptomyces
rishiriensis]
Length = 198
Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 5/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + ++ D RG F Y E+G Q N S G +RG+HF
Sbjct: 6 LGIEGAWEITPKQHADPRGVFLDWYRVDQFAAEVGRPLRLAQANLSV-SVRGVVRGVHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G +FD+ VD+R SPTYG W + + +Y+ G HGF +
Sbjct: 65 DVPPGQAKYVTCVRGALFDVVVDLRVGSPTYGRWEGTRLDDVSRRAVYLSEGIGHGFCAI 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ Y + Y+ + GV D + I WP+ P +S +DQ+ L +
Sbjct: 125 SDEATLCYLSSQTYNPASEHGVHPLDPELAINWPVE---TPLLSARDQDALLLAEA 177
>gi|170722880|ref|YP_001750568.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida W619]
gi|169760883|gb|ACA74199.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas putida W619]
Length = 186
Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats.
Identities = 55/173 (31%), Positives = 96/173 (55%), Gaps = 3/173 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + + ++ ++ D+RG F++ + L LG Q NHS + G++RGLH+Q
Sbjct: 9 LPLGGLFSVQHKRHGDARGQFARLFCESSLGALGAPFHVRQINHSHTQGSGSVRGLHYQT 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AKL+ C+ G ++D+AVD+R SPT+ W + + A +G + IP GFAHGF L
Sbjct: 69 GDTPEAKLITCLRGEVWDVAVDLREGSPTFLHWHAEHLRAGDGRSLLIPAGFAHGFQVLS 128
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ E++Y + Y+ + G++ D + I WPL + ++S +D P L+
Sbjct: 129 EDAELLYLHSADYAPGREGGLSVLDPKLAIRWPL---AVKNLSARDAAHPLLD 178
>gi|256380270|ref|YP_003103930.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinosynnema mirum DSM
43827]
gi|255924573|gb|ACU40084.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinosynnema mirum DSM
43827]
Length = 198
Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats.
Identities = 62/176 (35%), Positives = 88/176 (50%), Gaps = 6/176 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I F D RG+F + + G + Q NHS S G IRGLH+
Sbjct: 6 LRIPGAFEFTPSVFPDDRGFFVAPFQESAFERATGHRLRVAQVNHSQS-RRGVIRGLHYA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C GR+ D+ VD+R SPT+G W ++E+SA +Y+P GF H M L
Sbjct: 65 DVPPGQAKFVHCPRGRLLDVVVDVRVGSPTFGQWDAVELSAEKFNGVYLPEGFGHALMAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +T Y ++ ++ + + GV S+D+ WP + P +SEKD P L Q
Sbjct: 125 EDDTVTAYLCSEGFNPKAERGVDPL--SLDLPWPA--GVEPVLSEKDAQAPSLAQA 176
>gi|45934787|gb|AAS79451.1| putative 3-epimerase in D-allose pathway [Streptomyces bikiniensis]
Length = 196
Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats.
Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 4/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I + D RG + + + ++ G Q N + S G +RG+H+
Sbjct: 4 LSIEGAWSQEPVIHSDHRGRSHEWFRGESFRQAFGHDFPVAQVNVAVS-HRGALRGIHYT 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK C+ G D+ VD+R SPT+G W + + A +Y+ G F++L
Sbjct: 63 EIPPGQAKYSVCVRGAGLDVVVDVRIGSPTFGRWEIVPMDAERNTAVYLTAGLGRAFLSL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ ++Y + Y+ + V D + I WP D I P +S++D+N P L +
Sbjct: 123 TDDATLVYLCSSGYAPAREHSVNPLDPDLGIAWP--DDIEPLLSDRDENAPTLATAE 177
>gi|315124869|ref|YP_004066873.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|315018591|gb|ADT66684.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
Length = 196
Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats.
Identities = 59/146 (40%), Positives = 93/146 (63%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I+K + D RG+F + + + +E+G++ +Q NHS + G+IRG+H+Q PP
Sbjct: 11 IEGVYIIKPKPICDERGYFERYFCTNDFEEIGMKKPIIQINHSKTIGKGSIRGMHYQIPP 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ + K+VRC+ G I D+A+DIR+NSPT+ + S+E++ N +YIP GFAHGF L
Sbjct: 71 FCETKIVRCLKGSILDVAIDIRKNSPTFLQYFSIELNEVNNKYLYIPEGFAHGFQVLSDE 130
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSI 148
E++Y VT ++ D G+ DK+I
Sbjct: 131 AEILYLVTQEFNSSADRGINPFDKAI 156
>gi|123966644|ref|YP_001011725.1| dTDP-dehydrorhamnose 3,5-epimerase [Prochlorococcus marinus str.
MIT 9515]
gi|123201010|gb|ABM72618.1| dTDP-dehydrorhamnose 3,5-epimerase [Prochlorococcus marinus str.
MIT 9515]
Length = 185
Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats.
Identities = 71/174 (40%), Positives = 97/174 (55%), Gaps = 3/174 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I IL+ + D+RG F+ Y K+ L + Q N S SFD T+RG+HFQ PP
Sbjct: 8 IAGAYILENDVYRDNRGSFTCFYIEDDFKKNNLNTKWTQINSSLSFDERTLRGIHFQYPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y+Q KLVR I G IFD+ VD+R S T+G ++ N +YI GF HGFMT+E N
Sbjct: 68 YSQIKLVRVIQGSIFDVIVDLRPKSKTFGKHFFYFLNEKNNKMLYIANGFGHGFMTMENN 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
T++IY V+ Y E++ + W DK ++I WP +S KD N N+I
Sbjct: 128 TKIIYNVSAPYKPEYEETIIWNDKLLNIQWPNSP---LKLSAKDLNGKTFNEIK 178
>gi|187923456|ref|YP_001895098.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia phytofirmans
PsJN]
gi|187714650|gb|ACD15874.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia phytofirmans
PsJN]
Length = 183
Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats.
Identities = 57/176 (32%), Positives = 96/176 (54%), Gaps = 5/176 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V++++ F D G+ +++S+ ++ VQD HS + G +RGLH+Q
Sbjct: 10 LPEVKLIEPEVFCDEFGFCFESFSADEFIDDVSQAFQLVQDRHSRAVR-GVLRGLHYQVQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q +L+R + G +F +AVD+R NSP +G W +SA N QI+ P GFAHGF+ L
Sbjct: 69 -RPQGRLMRVVVGEVFAVAVDVRLNSPNFGKWCGAYLSAANYRQIWAPPGFAHGFVVLSN 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E ++K T+++ E + + W+D I I WP+ P++ KD L + ++
Sbjct: 128 FAECLWKTTEYWFPELERCILWRDPDIGIEWPI--DFEPTLGAKDAAGRRLYEAEN 181
>gi|169884270|gb|ACA97814.1| RfbD [Xylella fastidiosa]
gi|169884272|gb|ACA97815.1| RfbD [Xylella fastidiosa]
gi|169884274|gb|ACA97816.1| RfbD [Xylella fastidiosa]
gi|169884276|gb|ACA97817.1| RfbD [Xylella fastidiosa]
gi|169884278|gb|ACA97818.1| RfbD [Xylella fastidiosa]
Length = 146
Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats.
Identities = 64/151 (42%), Positives = 91/151 (60%), Gaps = 5/151 (3%)
Query: 13 KFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
F+D+RG F + ++++ + G+ FVQ N S S G +RGLH+Q P Q KLV +
Sbjct: 1 VFDDARGEFFEAWNAECFERQGMSSRFVQSNVSISM-YGVLRGLHYQW-PRPQGKLVGVL 58
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
G ++D+AVDIRR SP YG WV++ +SA N Q++IP GFAHGF+ L Y TD
Sbjct: 59 EGEVYDVAVDIRRGSPHYGRWVAVLLSAKNKRQLWIPEGFAHGFVVLSERAVFNYLCTDV 118
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVS 163
Y E D+G+ W D I + WP+ +P +S
Sbjct: 119 YVKEADAGIRWNDALIGVDWPI---AVPLLS 146
>gi|169884214|gb|ACA97786.1| RfbD [Xylella fastidiosa]
gi|169884216|gb|ACA97787.1| RfbD [Xylella fastidiosa]
gi|169884218|gb|ACA97788.1| RfbD [Xylella fastidiosa]
gi|169884220|gb|ACA97789.1| RfbD [Xylella fastidiosa]
gi|169884222|gb|ACA97790.1| RfbD [Xylella fastidiosa]
gi|169884224|gb|ACA97791.1| RfbD [Xylella fastidiosa]
gi|169884226|gb|ACA97792.1| RfbD [Xylella fastidiosa]
gi|169884228|gb|ACA97793.1| RfbD [Xylella fastidiosa]
gi|169884230|gb|ACA97794.1| RfbD [Xylella fastidiosa]
gi|169884232|gb|ACA97795.1| RfbD [Xylella fastidiosa]
gi|169884234|gb|ACA97796.1| RfbD [Xylella fastidiosa]
gi|169884236|gb|ACA97797.1| RfbD [Xylella fastidiosa]
gi|169884238|gb|ACA97798.1| RfbD [Xylella fastidiosa]
gi|169884240|gb|ACA97799.1| RfbD [Xylella fastidiosa]
gi|169884242|gb|ACA97800.1| RfbD [Xylella fastidiosa]
gi|169884244|gb|ACA97801.1| RfbD [Xylella fastidiosa]
gi|169884246|gb|ACA97802.1| RfbD [Xylella fastidiosa]
gi|169884248|gb|ACA97803.1| RfbD [Xylella fastidiosa]
gi|169884250|gb|ACA97804.1| RfbD [Xylella fastidiosa]
gi|169884252|gb|ACA97805.1| RfbD [Xylella fastidiosa]
gi|169884254|gb|ACA97806.1| RfbD [Xylella fastidiosa]
gi|169884256|gb|ACA97807.1| RfbD [Xylella fastidiosa]
gi|169884258|gb|ACA97808.1| RfbD [Xylella fastidiosa]
gi|169884260|gb|ACA97809.1| RfbD [Xylella fastidiosa]
gi|169884262|gb|ACA97810.1| RfbD [Xylella fastidiosa]
gi|169884264|gb|ACA97811.1| RfbD [Xylella fastidiosa]
gi|169884266|gb|ACA97812.1| RfbD [Xylella fastidiosa]
gi|169884268|gb|ACA97813.1| RfbD [Xylella fastidiosa]
Length = 146
Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats.
Identities = 64/151 (42%), Positives = 91/151 (60%), Gaps = 5/151 (3%)
Query: 13 KFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
F+D+RG F + ++++ + G+ FVQ N S S G +RGLH+Q P Q KLV +
Sbjct: 1 VFDDARGEFFEAWNAECFQRQGMSSRFVQSNVSISM-YGVLRGLHYQW-PRPQGKLVGVL 58
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
G ++D+AVDIRR SP YG WV++ +SA N Q++IP GFAHGF+ L Y TD
Sbjct: 59 EGEVYDVAVDIRRGSPHYGRWVAVLLSAKNKRQLWIPEGFAHGFVVLSERAVFNYLCTDV 118
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVS 163
Y E D+G+ W D I + WP+ +P +S
Sbjct: 119 YVKEADAGIRWNDALIGVDWPI---AVPLLS 146
>gi|169884280|gb|ACA97819.1| RfbD [Xylella fastidiosa]
gi|169884282|gb|ACA97820.1| RfbD [Xylella fastidiosa]
gi|169884284|gb|ACA97821.1| RfbD [Xylella fastidiosa]
gi|169884286|gb|ACA97822.1| RfbD [Xylella fastidiosa]
gi|169884288|gb|ACA97823.1| RfbD [Xylella fastidiosa]
gi|169884290|gb|ACA97824.1| RfbD [Xylella fastidiosa]
gi|169884292|gb|ACA97825.1| RfbD [Xylella fastidiosa]
gi|169884294|gb|ACA97826.1| RfbD [Xylella fastidiosa]
gi|169884296|gb|ACA97827.1| RfbD [Xylella fastidiosa]
gi|169884298|gb|ACA97828.1| RfbD [Xylella fastidiosa]
gi|169884300|gb|ACA97829.1| RfbD [Xylella fastidiosa]
gi|169884302|gb|ACA97830.1| RfbD [Xylella fastidiosa]
gi|169884304|gb|ACA97831.1| RfbD [Xylella fastidiosa]
Length = 146
Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats.
Identities = 64/151 (42%), Positives = 90/151 (59%), Gaps = 5/151 (3%)
Query: 13 KFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
F+D+RG F + ++++ + G+ FVQ N S S G +RGLH+Q P Q KLV +
Sbjct: 1 VFDDARGEFFEAWNAECFQRQGMSSRFVQSNVSISM-YGVLRGLHYQW-PRPQGKLVGVL 58
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132
G ++D+AVDIRR SP YG WV++ +SA N Q++IP GFAHGF+ L Y TD
Sbjct: 59 EGEVYDVAVDIRRGSPHYGRWVAVLLSAKNKRQLWIPEGFAHGFVVLSERAVFNYLCTDV 118
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVS 163
Y E D+G+ W D I + WP+ P +S
Sbjct: 119 YVKEADAGIRWNDAVIGVDWPI---AAPLLS 146
>gi|5305789|gb|AAD41820.1|AF147703_6 putative NDP-hexose 3-epimerase TylJ [Streptomyces fradiae]
Length = 205
Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 80/176 (45%), Gaps = 4/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I +++ D RG F + S + L G Q N + S G +RG+HF
Sbjct: 8 LGIEGAWVIQPEIHPDRRGEFHAWFQSSEFRRLTGHSFSVPQVNIAVS-RKGALRGIHFS 66
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK C+ G ++ VDIR SPTYG W ++ + N +Y+P G F+ L
Sbjct: 67 EVPPGQAKYSACVQGAGVEVVVDIRLGSPTYGQWRAVPVDEYNRTAVYVPAGLGRAFVAL 126
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T ++Y + Y+ + V D + I WP + + +SE+D P L +
Sbjct: 127 TDRTTLVYLCSSEYAARREHAVNPLDPDLAIAWP--EDVELLLSERDTRAPTLAEA 180
>gi|302532509|ref|ZP_07284851.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp. C]
gi|302441404|gb|EFL13220.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp. C]
Length = 183
Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats.
Identities = 59/174 (33%), Positives = 94/174 (54%), Gaps = 6/174 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I + + + D RG+F +T+ + +L+ +GL FVQD+ S S G +RGLH +
Sbjct: 9 IAGAYLFEPTPYADERGFFCRTFDADVLRSVGLDPHAFVQDSVSRSVR-GVLRGLHLRSG 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AKLVRC G +FD+ VD+R +SPT+ E+S +Y+P G AHGF L
Sbjct: 68 -AGEAKLVRCSYGSVFDVVVDLRPDSPTFRNRAFFELSGETQATLYVPAGCAHGFQALTE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ Y++ + D +A+ D + I WPL T +S++D+ P L++I
Sbjct: 127 TADTSYRIDRPHDPAEDVTIAFDDPELAIPWPLPVT---LMSQRDREAPSLSEI 177
>gi|224812417|gb|ACN64855.1| PokS7 [Streptomyces diastatochromogenes]
Length = 204
Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 83/178 (46%), Gaps = 4/178 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + D+RG F + +G V Q NHS S G +RGLHF
Sbjct: 9 LAVAGSFEFTPEIHTDARGLFVSPLQEEAFVAAVGEPFVTAQTNHSRSAR-GVLRGLHFT 67
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C GR D VDIR SPT+G W +E+ A + +YIP G H F+ L
Sbjct: 68 TTPPGQAKYVYCAQGRALDAVVDIRLGSPTFGKWDIVEMDAVSYRAVYIPDGAGHAFLAL 127
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ +T + Y V+ Y E + V D ++ + WP + +SE+D L + ++
Sbjct: 128 DDDTVMSYLVSSAYRTELEQAVDPLDPALGLPWPY--DMEFVMSERDTTAVSLAEAEA 183
>gi|223937498|ref|ZP_03629402.1| dTDP-4-dehydrorhamnose 3,5-epimerase [bacterium Ellin514]
gi|223893849|gb|EEF60306.1| dTDP-4-dehydrorhamnose 3,5-epimerase [bacterium Ellin514]
Length = 182
Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats.
Identities = 69/178 (38%), Positives = 103/178 (57%), Gaps = 6/178 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V +LK R FED RG F +TY+ L +ELG+ ++ S S +RG+HFQ
Sbjct: 11 ELTSVFVLKPRVFEDQRGSFVKTYNENLFEELGIPFKPREEFFSVS-HKNVVRGMHFQLV 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
A KLV C G++ D+ VD+R+ S YG +S E+S +N ++IP GFAHGF+ LE
Sbjct: 70 GAAHDKLVYCPLGKVLDVVVDLRKWSKNYGKTMSRELSGSNREMLFIPVGFAHGFLALED 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
NT ++Y+ + +S +HD+G W S WP+ + P +S++D+ P L SPF
Sbjct: 130 NTMMVYQTSTVHSPQHDAGFLWN--SFGFDWPVQN---PILSDRDKAFPALKDFQSPF 182
>gi|229008635|ref|ZP_04166047.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus mycoides Rock1-4]
gi|228752640|gb|EEM02256.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus mycoides Rock1-4]
Length = 155
Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats.
Identities = 72/155 (46%), Positives = 97/155 (62%), Gaps = 3/155 (1%)
Query: 30 LKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPT 89
L+ LG+ FVQDN S+S + G IRGLHFQ P AQ KLV+ I G IFD+ VD+R+ SPT
Sbjct: 2 LRHLGIHHKFVQDNTSYSKEAGVIRGLHFQLEPRAQTKLVQVIQGAIFDVIVDLRKGSPT 61
Query: 90 YGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSID 149
Y W S ++ +N + +P GFAHGF TL +T V YKV +FY DSG+AW D+
Sbjct: 62 YKKWQSFLLTGDNHRLLLVPKGFAHGFCTLVPHTIVHYKVDEFYDASCDSGIAWDDEEFA 121
Query: 150 ITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGL 184
I+WP+ + P +SEKD LP + F++ +
Sbjct: 122 ISWPVSN---PILSEKDGMLPKFTETTHYFQFKEI 153
>gi|2326951|gb|AAB66649.1| RmlC [Mycobacterium tuberculosis]
Length = 203
Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats.
Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 3/175 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ + DSRG F + + + G Q N S S G +RGLHF
Sbjct: 8 LDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSS-AGVLRGLHFA 66
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P +QAK V C++G +FD+ VDIR SPT+G W S+ + + IY+ G AHGF+ L
Sbjct: 67 QLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLD-DQDRNIYVSDGLAHGFLAL 125
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
+ N+ V+Y + Y+ + + D ++ D PS+S++D P +
Sbjct: 126 QDNSTVMYLCSAEYNPQRQHTICATDPTLASIRRWSDGGCPSLSDRDAAAPSFEE 180
>gi|300782492|ref|YP_003762783.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Amycolatopsis mediterranei
U32]
gi|299792006|gb|ADJ42381.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Amycolatopsis mediterranei
U32]
Length = 182
Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats.
Identities = 63/178 (35%), Positives = 103/178 (57%), Gaps = 6/178 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
I+ + + D RG+FS+T+ ++ +G+ FVQD+ S S G +RG+H +
Sbjct: 8 EIDGAYLFEPTPHADQRGFFSRTFDRDVVASVGIDPDGFVQDSLSRS-RKGVVRGMHLR- 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AKLVRC G IFD+ VD+R +SPT+ + E+S N + +YIP G AHGF +L
Sbjct: 66 GGAGEAKLVRCSHGAIFDVVVDLRPDSPTFRNVKTFELSGENQVSVYIPAGCAHGFQSLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
++V Y++ + E D ++++D +DI+WPL T+ VS++D+ P L + P
Sbjct: 126 DPSDVSYRIDRAHDPEEDITISYKDPELDISWPLSVTM---VSDRDERAPSLEEALKP 180
>gi|16945709|dbj|BAB72040.1| AclL [Streptomyces galilaeus]
Length = 201
Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats.
Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 5/179 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHF 58
+ ++ + FED R F+ + +F Q NHS S GT+RG+H+
Sbjct: 6 LAVSGAFVFTPPVFEDDRDLFTSPFQEPAFVAALGHPLFPVAQSNHSRS-RRGTVRGIHY 64
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
P AK V C GR DI VDIR SPTYG W S + +Y P G H F+
Sbjct: 65 TVTPPGVAKYVYCARGRAIDIVVDIRVGSPTYGRWDSSVLDPEGFRAMYFPVGVGHAFIA 124
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
LE +T + Y ++ Y +H+ ++ D ++ + P+ + P +S +D P L Q+ +
Sbjct: 125 LEDDTVMSYMLSGSYEAQHEMSLSPLDPALGL--PIPQDVAPLLSARDTAAPLLEQVRA 181
>gi|148252624|ref|YP_001237209.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bradyrhizobium sp. BTAi1]
gi|146404797|gb|ABQ33303.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bradyrhizobium sp. BTAi1]
Length = 167
Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats.
Identities = 64/165 (38%), Positives = 89/165 (53%), Gaps = 3/165 (1%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKL 68
++ D RG F++T+ + + G++ VQ N S + GT+RG+HFQR P A AKL
Sbjct: 2 IELMPHGDRRGTFTRTWCASTFADHGIEFTPVQGNSSLTRKRGTVRGMHFQRAPKADAKL 61
Query: 69 VRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128
VRC +G I D+ VDIR S T G + E+S ++G +YIP GFAHGF TL ++ V Y
Sbjct: 62 VRCTSGCIHDVIVDIREGSSTRGEVYAYELSPSSGRMLYIPAGFAHGFQTLADDSVVEYL 121
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ Y E G D S I WP + +S+KD P
Sbjct: 122 MGIEYVAELSDGFRHDDPSFRIAWP---EAVSEMSDKDAAWPDFA 163
>gi|295676133|ref|YP_003604657.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. CCGE1002]
gi|295435976|gb|ADG15146.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. CCGE1002]
Length = 183
Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats.
Identities = 57/176 (32%), Positives = 95/176 (53%), Gaps = 5/176 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V++++ F D G+ +++S+ ++ FVQD H + G +RGLH+Q
Sbjct: 10 LPEVKLIEPEVFIDEYGFCFESFSADEFSDDVAQGFNFVQDRHLRAVH-GVLRGLHYQVQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q +L+R + G IFD+AVD+R NSP +G W ++ N QI++P GFAHGF+ L
Sbjct: 69 -RPQGRLLRVVRGEIFDVAVDVRLNSPNFGKWSGEYLNEENQRQIWVPPGFAHGFVVLSE 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E ++K T+++ E + + W D I I WP+ P + KD L + ++
Sbjct: 128 VAECVWKTTEYWFPELERCLLWSDPDIGIDWPI--DFQPILGSKDAAGRRLYEAEN 181
>gi|163850282|ref|YP_001638325.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
PA1]
gi|163661887|gb|ABY29254.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
PA1]
Length = 177
Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats.
Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 3/170 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + + + D RG+F++T E GL F Q + SF+ GT+RG+HF +
Sbjct: 6 LALPGLFRVVPEPHADERGFFARTQCESEFAERGLVGHFTQSSVSFNHRRGTVRGMHFSK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+A+ KLVRC AG I D +D+R +SPTY S+ +SA N +YIP G AHGF TL
Sbjct: 66 LPHAETKLVRCTAGAIHDAVIDLRPDSPTYLRTTSVTLSAANRHALYIPAGLAHGFQTLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
+ E++Y + + GV W D + + WP T+ ++ +D P
Sbjct: 126 DDAEILYMIDRPFVASAADGVRWDDPAFGLVWPEPVTV---IAPRDLAFP 172
>gi|214003857|gb|ACJ60977.1| VEG35 [uncultured soil bacterium]
Length = 202
Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 6/178 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHF 58
+ + R F D RG F Y E +F Q NHS S G +RG+H+
Sbjct: 6 LAVEGAIEFTPRVFPDDRGAFLSPYQEAAFVEAHGSPLFRVAQTNHSVS-KRGVVRGVHY 64
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
P AK V C G+ DI +DIR SPT+G W S+ + + +Y P G H F+
Sbjct: 65 TATPPGVAKYVYCARGKALDIVIDIRVGSPTFGQWDSVLMDQQDHRALYFPVGVGHAFIA 124
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL-DTILPSVSEKDQNLPFLNQI 175
LE +T + Y ++ Y + ++ D ++ + P+ + P +S++D+ L +
Sbjct: 125 LEDDTVMSYMISGTYVARDELALSPLDPALGL--PIETSGVEPILSDRDKVAVTLAEA 180
>gi|407886|emb|CAA51671.1| unnamed protein product [Streptomyces griseus]
gi|742317|prf||2009361D ORF 4 in daunorubicin synthesis gene
Length = 212
Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 5/175 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV--QDNHSFSFDCGTIRGLHF 58
+ + + D RG F + + ++ +F Q NHS S G +RG+H+
Sbjct: 6 LAVEGAYTFVPEVYPDDRGLFVSPFREQGFTKVVGHPLFPVRQTNHSLSGR-GVVRGVHY 64
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
P AK V C GR DI VD+R SPTYG W ++E+ +Y P G H F+
Sbjct: 65 TVTPPGTAKYVYCARGRSLDIIVDVRVGSPTYGRWDAVELDPGEFRAVYFPVGVGHAFVA 124
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
LE +T + Y ++ Y H+ V+ D ++ + P+ P +SE+D+ P L
Sbjct: 125 LEEDTVMSYMLSGEYVPSHELAVSALDPALGL--PVPADTEPLLSERDRVAPDLA 177
>gi|297162967|gb|ADI12679.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces bingchenggensis
BCW-1]
Length = 183
Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats.
Identities = 64/174 (36%), Positives = 97/174 (55%), Gaps = 6/174 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGL-QDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + + + D RG+F +T+ + +++ +GL D FVQD+ S S G +RGLH +
Sbjct: 9 IAGAYLFEPTPYADERGFFCRTFDADVVRSVGLDPDAFVQDSLSRSVR-GVLRGLHLRSG 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AKLVRC GRIFD VD+R +SPTY E+S + +YIP G AHGF L
Sbjct: 68 -AGEAKLVRCSYGRIFDTVVDLRTDSPTYRNRAFFELSDETQVTLYIPAGCAHGFQALTE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+V Y++ + D +A+ D + I WPL T S+S++D+ P L ++
Sbjct: 127 TADVSYRIDRPHDPAEDVTIAFDDPELAIPWPLPVT---SMSQRDREAPSLAEV 177
>gi|73535427|pdb|1WLT|A Chain A, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
Homologue From Sulfolobus Tokodaii
gi|73535428|pdb|1WLT|B Chain B, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
Homologue From Sulfolobus Tokodaii
Length = 196
Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats.
Identities = 59/172 (34%), Positives = 99/172 (57%), Gaps = 9/172 (5%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
+ ++K + F D RG+F + + S+ ++ + +Q N SFS G +RGLH+QR P
Sbjct: 31 GIILIKPKVFPDKRGFFLEVFKSEDFTKMRIP-NVIQTNMSFS-RKGVVRGLHYQRTPKE 88
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q K++ GRI D+AVD+R++SPT+G +V E++ N ++IP GFAHGF LE +
Sbjct: 89 QGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDSIV 148
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + + YS H+ +++ I WP+ + I +S+KD P L + +
Sbjct: 149 IYFITHNEYSPPHERCISYS----YIDWPIKEVI---ISDKDLQCPSLEKAE 193
>gi|41581811|gb|AAS07755.1| putative dNTP-hexose 3,5-epimerase [Amycolatopsis mediterranei
S699]
Length = 214
Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats.
Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 4/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I+ ++ ++ F D RG F + Y +L + LG + F+Q N S S +RG+H
Sbjct: 14 LAIDGAHVVTSQSFGDERGDFFEVYRQDVLTEALGYRPRFLQTNVSTSCR-NVVRGVHGA 72
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P AK V C+ G + D VD+R SPT+G W + ++ + G +Y+ G H F++L
Sbjct: 73 MTPPGLAKFVTCLRGSLLDFVVDVRTGSPTFGQWDMIVLNQHGGTAVYVEEGLGHAFVSL 132
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +T V Y ++D Y V D I + PL P +SE+D P L +
Sbjct: 133 EDDTCVQYLLSDLYRPAEVLTVQPLDPEIGL--PLNLPGEPILSERDAAAPTLREA 186
>gi|148259609|ref|YP_001233736.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium cryptum JF-5]
gi|146401290|gb|ABQ29817.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium cryptum JF-5]
Length = 183
Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats.
Identities = 67/170 (39%), Positives = 98/170 (57%), Gaps = 8/170 (4%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG F + + S+ L L Q N S + GT+RGLHFQ PP+A+ KL+RC+ GR
Sbjct: 21 DARGAFQRCFCSRDLAPLLGTREIAQINRSLTARSGTVRGLHFQFPPHAEMKLIRCLRGR 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
++D+AVD+R SP W + E+SA NG + IP G AHGF LE ++E++Y T Y+
Sbjct: 81 VWDVAVDLRAGSPQLLRWHAEELSAANGRMLVIPEGVAHGFQALENDSELLYIHTAHYAH 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLP 185
+ GV D + I WP++ +S++D+ LP L P + G P
Sbjct: 141 AAEGGVRCDDPQLGIDWPMMVGG---LSDRDRALPML-----PALFTGFP 182
>gi|326402816|ref|YP_004282897.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium multivorum
AIU301]
gi|325049677|dbj|BAJ80015.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Acidiphilium multivorum
AIU301]
Length = 183
Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats.
Identities = 67/170 (39%), Positives = 98/170 (57%), Gaps = 8/170 (4%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG F + + S+ L L Q N S + GT+RGLHFQ PP+A+ KL+RC+ GR
Sbjct: 21 DARGAFQRCFCSRDLAPLLGTREIAQINRSLTARSGTVRGLHFQFPPHAEMKLIRCLRGR 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
++D+AVD+R SP W + E+SA NG + IP G AHGF LE ++E++Y T Y+
Sbjct: 81 VWDVAVDLRAGSPQLLRWHAEELSAANGRMLVIPEGVAHGFQALENDSELLYIHTAHYAH 140
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLP 185
+ GV D + I WP++ +S++D+ LP L P + G P
Sbjct: 141 AAEGGVRCDDPQLGIDWPMMVGG---LSDRDRALPML-----PALFTGFP 182
>gi|157736946|ref|YP_001489629.1| putative hexose epimerase [Arcobacter butzleri RM4018]
gi|157698800|gb|ABV66960.1| putative hexose epimerase [Arcobacter butzleri RM4018]
Length = 190
Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats.
Identities = 61/183 (33%), Positives = 102/183 (55%), Gaps = 3/183 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + + + +D+RG+ +++ + LG + F QDN S+S G IR LH
Sbjct: 6 LEIPDLVLCEPTFHKDNRGFVYESFKKESFNNFLGFEVDFCQDNISYSM-YGVIRALHTN 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Y+Q+KLV + G I D+AVD R S ++G VS+E+++ Q++IP GF HGF L
Sbjct: 65 TLNYSQSKLVNVLKGEILDVAVDFRVGSASFGKVVSIELNSEENKQLFIPRGFLHGFSVL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ V+ KV +++++ GV + D+ ++I W + + VSE D+NL +SPF
Sbjct: 125 SKDALVMIKVDRYFALDESIGVRYNDEDLNIDWKIKKESV-IVSEADKNLLAFKDTNSPF 183
Query: 180 EYD 182
Y+
Sbjct: 184 MYN 186
>gi|302547048|ref|ZP_07299390.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces hygroscopicus
ATCC 53653]
gi|302464666|gb|EFL27759.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces himastatinicus
ATCC 53653]
Length = 183
Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 97/175 (55%), Gaps = 6/175 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGL-QDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ + + + D RG+F +T+ +++++ +GL D FVQD+ S S G +RGLH +
Sbjct: 8 EISGAYLFEPTPYADERGFFCRTFDAEVVRSVGLDPDAFVQDSLSRSVR-GVLRGLHLRS 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AKLVRC G+IFD+ VD+R +SPTY E+S +YIP G AHGF L
Sbjct: 67 G-AGEAKLVRCSYGKIFDVIVDLRTDSPTYLGRAFFELSGETQTTLYIPAGCAHGFQALT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ Y++ + D +A+ D + I WPL T S+S++D+ P L +
Sbjct: 126 ETADTSYRIDRPHDPAEDVTIAFDDPELAIPWPLPAT---SMSQRDREAPSLADV 177
>gi|40644856|emb|CAE17549.1| NDP-5-epimerase [Streptomyces griseus subsp. griseus]
Length = 209
Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 4/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ ++ + R D RG F + YS L G S S G +RG+HF
Sbjct: 4 LAVDGAWEIDLRPHHDERGTFVEWYSDDELAAALGAPMPVALGAVSIS-RKGVVRGVHFV 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QA+ V C+AG + D VD+R SPT+G W S+ + + +++ G H F L
Sbjct: 63 ETPPGQARYVTCVAGEVRDFVVDVREGSPTFGRWDSVRLGPDQWRAVHLAEGLGHAFTAL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
V+Y + Y + + D + + WP S+S +D+ P L +
Sbjct: 123 TDRATVLYLCSAPYRPGRERTIHPLDPELALPWPA--GAERSLSIRDREAPTLAEA 176
>gi|15922286|ref|NP_377955.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus tokodaii str. 7]
gi|118137319|pdb|2B9U|A Chain A, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
From Sulfolobus Tokodaii
gi|118137320|pdb|2B9U|C Chain C, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
From Sulfolobus Tokodaii
gi|118137321|pdb|2B9U|D Chain D, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
From Sulfolobus Tokodaii
gi|118137322|pdb|2B9U|B Chain B, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
From Sulfolobus Tokodaii
gi|118137323|pdb|2B9U|E Chain E, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
From Sulfolobus Tokodaii
gi|118137324|pdb|2B9U|F Chain F, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
From Sulfolobus Tokodaii
gi|118137325|pdb|2B9U|G Chain G, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
From Sulfolobus Tokodaii
gi|118137326|pdb|2B9U|H Chain H, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
From Sulfolobus Tokodaii
gi|118137327|pdb|2B9U|I Chain I, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
From Sulfolobus Tokodaii
gi|118137328|pdb|2B9U|J Chain J, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
From Sulfolobus Tokodaii
gi|118137329|pdb|2B9U|K Chain K, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
From Sulfolobus Tokodaii
gi|118137330|pdb|2B9U|L Chain L, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
From Sulfolobus Tokodaii
gi|15623075|dbj|BAB67064.1| 176aa long hypothetical dTDP-4-dehydrorhamnose 3,5-epimerase
[Sulfolobus tokodaii str. 7]
Length = 176
Score = 200 bits (510), Expect = 7e-50, Method: Composition-based stats.
Identities = 59/172 (34%), Positives = 99/172 (57%), Gaps = 9/172 (5%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
+ ++K + F D RG+F + + S+ ++ + +Q N SFS G +RGLH+QR P
Sbjct: 11 GIILIKPKVFPDKRGFFLEVFKSEDFTKMRIP-NVIQTNMSFS-RKGVVRGLHYQRTPKE 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q K++ GRI D+AVD+R++SPT+G +V E++ N ++IP GFAHGF LE +
Sbjct: 69 QGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDSIV 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + + YS H+ +++ I WP+ + I +S+KD P L + +
Sbjct: 129 IYFITHNEYSPPHERCISYS----YIDWPIKEVI---ISDKDLQCPSLEKAE 173
>gi|28492998|ref|NP_787159.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Tropheryma whipplei str.
Twist]
gi|28572208|ref|NP_788988.1| epimerase [Tropheryma whipplei TW08/27]
gi|28410339|emb|CAD66725.1| putative epimerase [Tropheryma whipplei TW08/27]
gi|28476038|gb|AAO44128.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Tropheryma whipplei str.
Twist]
Length = 207
Score = 200 bits (510), Expect = 7e-50, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 3/176 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ +N + DSRG FS+ Y +L+ E+G Q N SFS +RGLH+
Sbjct: 6 LKVNGCLEVTPEVHVDSRGSFSEVYRFDVLEKEIGYPLRVAQVNRSFSKKA-VLRGLHYS 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P++QAK V C G + D D+R SP++G W ++ + + +YIP G H F+ L
Sbjct: 65 LAPHSQAKYVMCANGAVLDFVFDLRLGSPSFGVWDAVLLDSVGCRAVYIPEGVGHAFIAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
V Y + Y E + + DK++++ +P + +SE+D P L +
Sbjct: 125 SKTATVNYLCSATYDPEREKSINPLDKNLNLEYPFTTPEI-VLSERDAAAPTLPEA 179
>gi|254392191|ref|ZP_05007378.1| epimerase [Streptomyces clavuligerus ATCC 27064]
gi|294816487|ref|ZP_06775130.1| epimerase [Streptomyces clavuligerus ATCC 27064]
gi|326444811|ref|ZP_08219545.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces clavuligerus
ATCC 27064]
gi|197705865|gb|EDY51677.1| epimerase [Streptomyces clavuligerus ATCC 27064]
gi|294329086|gb|EFG10729.1| epimerase [Streptomyces clavuligerus ATCC 27064]
Length = 213
Score = 200 bits (510), Expect = 8e-50, Method: Composition-based stats.
Identities = 60/174 (34%), Positives = 92/174 (52%), Gaps = 6/174 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I + + D RG+F +T+ + L + +GL FVQD+ S S G +RGLH +
Sbjct: 9 ITGAYLFEPTPRADERGFFCRTFDAGLARSVGLDPHAFVQDSVSRSAR-GVLRGLHLRSG 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AKLVRC G+IFD+ +D+R +SPTY + E+S +YIP G AHGF L
Sbjct: 68 -AGEAKLVRCSFGKIFDVVIDLRPDSPTYRTVATFELSGETQTTLYIPAGCAHGFQALTG 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ Y++ + D +A+ D + I WPL T +S +D+ P L ++
Sbjct: 127 TADTSYRIDRPHDPAEDVTIAFDDPELAIPWPLPVT---LMSRRDREAPSLAEV 177
>gi|50954292|ref|YP_061580.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leifsonia xyli subsp. xyli
str. CTCB07]
gi|50950774|gb|AAT88475.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leifsonia xyli subsp. xyli
str. CTCB07]
Length = 201
Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + + D RG F + Y L+E G Q N S S G++RG+HF
Sbjct: 6 LTIPDAYEITPVQHADDRGLFFEFYRFDRLEEAVGHSLDLKQGNTSVS-RRGSVRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V G + D +DIR SPT+G W S+ + + +Y+ G H F+ L
Sbjct: 65 DIPPSQAKYVMAPRGAVLDFVIDIRLGSPTFGQWDSVLLDDKDRRALYVAEGLGHCFVAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ V Y VTD Y+ + G+ D I + +P+ + L +S KD + P L + +
Sbjct: 125 TADATVSYLVTDVYTPTREHGINPLDSDIALAFPVPEDEL-LLSPKDTDAPGLAEAQA 181
>gi|2916806|emb|CAA12011.1| SnogF [Streptomyces nogalater]
Length = 201
Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats.
Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 5/179 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHF 58
+ + R F D+RG F + + E +F Q NHS S G +RG HF
Sbjct: 6 LLVEGAHAFTPRVFPDARGCFVSPFQQTPVAEALGHRLFPVAQTNHSRS-RRGVVRGAHF 64
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
P AK V C GR D +DIR SPT+G W S+ + N +Y P G AH F
Sbjct: 65 TLTPPGIAKYVYCARGRARDYVIDIRVGSPTFGQWDSVVLDDRNFRAMYFPVGVAHAFAA 124
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
LE +T + Y ++ Y +++ ++ D + + P +L +SE+D P L +++S
Sbjct: 125 LEDDTVMSYMLSGEYVADNELALSVFDPDLALELPGDTPLL--LSERDTAAPTLRELES 181
>gi|212550817|ref|YP_002309134.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212549055|dbj|BAG83723.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 182
Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats.
Identities = 60/174 (34%), Positives = 100/174 (57%), Gaps = 2/174 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + +++ + D RG+F +TY + + FVQ++ S S CG +RG+H+Q+
Sbjct: 8 IWGLWLIRPKLIFDERGYFMETYMKEEFERRVGTIDFVQESQSCSV-CGVLRGMHYQQGE 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
AQAKL+ + G I D+ VD+R++S ++G + ++E+SA N LQ +IP GFAHGF+ L
Sbjct: 67 AAQAKLINVLEGTIQDVVVDLRKDSNSFGKYETVELSAENKLQFFIPRGFAHGFLVLSEW 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ YKV + Y + + + DK ++I W + SEKD+ L +I+
Sbjct: 127 ATINYKVDNVYCPDAERILYAGDKDVNILWDKRCELWKQ-SEKDRLGSSLREIE 179
>gi|300782571|ref|YP_003762862.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Amycolatopsis mediterranei
U32]
gi|2792336|gb|AAC01732.1| dNTP-hexose 3,5 epimerase [Amycolatopsis mediterranei S699]
gi|299792085|gb|ADJ42460.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Amycolatopsis mediterranei
U32]
Length = 206
Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats.
Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 4/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I+ ++ ++ F D RG F + Y +L + LG + F+Q N S S +RG+H
Sbjct: 6 LAIDGAHVVTSQSFGDERGDFFEVYRQDVLTEALGYRPRFLQTNVSTSCR-NVVRGVHGA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P AK V C+ G + D VD+R SPT+G W + ++ + G +Y+ G H F++L
Sbjct: 65 MTPPGLAKFVTCLRGSLLDFVVDVRTGSPTFGQWDMIVLNQHGGTAVYVEEGLGHAFVSL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +T V Y ++D Y V D I + PL P +SE+D P L +
Sbjct: 125 EDDTCVQYLLSDLYRPAEVLTVQPLDPEIGL--PLNLPGEPILSERDAAAPTLREA 178
>gi|297191548|ref|ZP_06908946.1| epimerase [Streptomyces pristinaespiralis ATCC 25486]
gi|297150986|gb|EFH30918.1| epimerase [Streptomyces pristinaespiralis ATCC 25486]
Length = 183
Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats.
Identities = 62/174 (35%), Positives = 94/174 (54%), Gaps = 6/174 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I + + + D RG F +T+ + +++ +GL FVQD+ S S G +RGLH +
Sbjct: 9 IAGAYLFEPTPYADERGLFCRTFDADVVRSVGLDPNAFVQDSVSRSVR-GVLRGLHLRSG 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AKLVRC G IFD+ VD+R +SPTY S E+S + +YIP G AHGF L
Sbjct: 68 -AGEAKLVRCSYGNIFDVVVDLRPHSPTYRNVASFELSGETQVTLYIPAGCAHGFQALSA 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ Y++ + D +A+ D + I WPL T S+S +D+ P L ++
Sbjct: 127 TADTSYRIDRRHDPAEDVTIAFDDPELAIAWPLPVT---SMSRRDREAPSLAEV 177
>gi|266631449|emb|CBA11560.1| NDP-hexose-3,5-epimerase [Streptomyces lydicus]
Length = 218
Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats.
Identities = 55/176 (31%), Positives = 81/176 (46%), Gaps = 4/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++I +L K DSRG F + Y L + G Q N S S G +RG+H
Sbjct: 6 LSIEGGLLLSPDKITDSRGCFYEAYRPGELADHAGHPFTVAQTNFSVSAH-GVLRGIHGT 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK+V C G + D+ VD+R+ SPT+G S + A +G +Y+ G H F+ L
Sbjct: 65 LTPPGQAKIVTCHRGAVLDVIVDLRQGSPTFGRHQSQVLRAESGAAVYLAEGLGHAFLAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+T V Y + + + D + I W + VSEKD+ P L +
Sbjct: 125 TDDTCVGYLCSTPFVPGTQIDLDPFDPDLAIDWGPAKDLH--VSEKDRRAPGLAEA 178
>gi|307328090|ref|ZP_07607270.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces violaceusniger
Tu 4113]
gi|306886209|gb|EFN17215.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces violaceusniger
Tu 4113]
Length = 198
Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 4/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ ++ D RG F Y+ G Q++HS S GT+RG+H+
Sbjct: 6 LAVSGAYEFSPDVHRDERGAFVAHYTEAAFAAAVGHPLRLGQNHHSVS-RRGTVRGVHYA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK+V C +G + D+ VD+R SPT+G W S+ + + +Y+ G H F+ L
Sbjct: 65 DVPPGQAKMVTCTSGELLDVVVDLRMGSPTFGHWDSVRLDPVSYRAVYLEEGLGHAFIAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+T Y + Y+ + + D ++ + WP + VS++D+N P L + +
Sbjct: 125 RDDTVAAYLNSAEYNPGAEHEIDPFDPALGLPWPT--DLEYLVSQRDRNAPGLAEAE 179
>gi|328886046|emb|CCA59285.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces venezuelae ATCC
10712]
Length = 202
Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFV-QDNHSFSFDCGTIRGLHF 58
+ I F+DSRG F+ Y + +LG V Q +H+ S GT+RG+HF
Sbjct: 10 LAIEGAFAFTPPVFKDSRGLFASPYQGDVFAGQLGRPLFQVEQVSHNLSAR-GTLRGVHF 68
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
P AK V C GR+ D +D+R SPT+G WV E+ A +Y+P G H F++
Sbjct: 69 TATPPGMAKYVYCPYGRLRDFLIDLRVGSPTFGQWVMNELDAETSRALYVPVGVGHAFVS 128
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
L+ ++ +Y ++ Y ++ + D ++ + L D + +S++D+ P L +
Sbjct: 129 LQDDSMCVYVMSQGYVPANELALNPLDPALGLD--LPDDVELILSDRDKIAPTLAEA 183
>gi|307325622|ref|ZP_07604823.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces violaceusniger
Tu 4113]
gi|306888750|gb|EFN19735.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces violaceusniger
Tu 4113]
Length = 183
Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats.
Identities = 61/174 (35%), Positives = 95/174 (54%), Gaps = 6/174 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGL-QDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + + + D RG+F +T+ + +++ +GL D FVQD+ S S G +RGLH +
Sbjct: 9 ITGAYLFEPTPYADERGFFCRTFDADVVRSVGLDPDAFVQDSLSRSVR-GVLRGLHLRSG 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AKLVRC GRIFD+ D+R +SPTY E+S +YIP G AHGF L
Sbjct: 68 -AGEAKLVRCSYGRIFDVVADLRTDSPTYLGRAFFELSGETQRTLYIPAGCAHGFQALTE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ Y++ + D +A+ D + I WPL + S+S++D+ P L ++
Sbjct: 127 TADTSYRIDRPHDPAEDVTIAFDDPELAIPWPLP---ITSMSQRDREAPSLAEV 177
>gi|254559532|ref|YP_003066627.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
DM4]
gi|254266810|emb|CAX22609.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
DM4]
Length = 177
Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats.
Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 3/170 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + + + D RG+F++T E GL F Q + SF+ GT+RG+HF +
Sbjct: 6 LALPGLFRVVPEPHADERGFFARTQCESEFAERGLVGHFTQSSVSFNHRRGTVRGMHFWK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+A+ KLVRC G I D +D+R +SPTY S+ +SA N +YIP G AHGF TL
Sbjct: 66 LPHAETKLVRCTGGAIHDAVIDLRPDSPTYLRTASVMLSAANRHALYIPAGLAHGFQTLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
+TE++Y + + GV W D + + WP T+ ++ +D P
Sbjct: 126 DDTEILYMIDRPFVASAADGVRWDDPAFGLAWPEPVTV---IAPRDLAFP 172
>gi|109899366|ref|YP_662621.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudoalteromonas atlantica
T6c]
gi|109701647|gb|ABG41567.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudoalteromonas atlantica
T6c]
Length = 187
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 63/186 (33%), Positives = 111/186 (59%), Gaps = 8/186 (4%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + ++ +K +K D RG+F++ + + L G Q Q NH+++ G++RGLHFQ
Sbjct: 9 LPLAGLKKVKRQKLGDERGFFARVFCAAELSICGWQGPIAQINHTYTAKKGSVRGLHFQL 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP+++ KLV C+ G+++D+ VD+R +S T+ W + +++++NG+ + IP GFAHGF TL
Sbjct: 69 PPFSEIKLVSCLKGQVWDVVVDLRADSATFLHWHAEKLTSDNGIGLLIPEGFAHGFQTLC 128
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+ E++Y + Y + ++G+ D + I WPL + SE+DQ L+ E
Sbjct: 129 DDVELLYCHSQAYQPKAEAGLNLLDPRLSINWPLP---ISQCSERDQAFSLLDA-----E 180
Query: 181 YDGLPL 186
Y G+ L
Sbjct: 181 YAGVDL 186
>gi|209521671|ref|ZP_03270362.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. H160]
gi|209497888|gb|EDZ98052.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. H160]
Length = 183
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 5/176 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V++++ F D G+ +++S+ ++ FVQD H + +RGLH+Q
Sbjct: 10 LPEVKLIEPEVFVDEFGFCFESFSADEFSDDVAQGFNFVQDRHLRAVHR-VLRGLHYQVQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q +L+R + G +FD+AVD+R NSP +G W +S N Q+++P GFAHGF+ L
Sbjct: 69 -RPQGRLLRVVRGEVFDVAVDVRLNSPNFGKWSGEYLSDANQRQVWVPPGFAHGFVVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E ++K T+++ E + + W D I I WP+ P + KD L + ++
Sbjct: 128 VAECVWKTTEYWFPELERCLLWSDPDIGIEWPI--DFEPILGSKDAAGRRLYEAEN 181
>gi|88319784|emb|CAF31362.1| putative NDP-hexose 3, 5-epimerase [Streptomyces sp. SCC 2136]
Length = 196
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 4/178 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
M I ++ R+ D RG F + L++ G+ Q N+S S T+RG+H
Sbjct: 1 MVIPGTYLVTPRQIHDERGNFYEAMRDDTLEKATGVAFQPRQINYSVS-RRHTLRGIHSV 59
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G + DI VD+R SP + E+ A++G +Y+P G HGF+ L
Sbjct: 60 SIPPGQAKYVTCVRGVLRDIVVDLRIGSPAFMKHQVNELDADSGRSVYVPEGVGHGFLAL 119
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ + Y V+ Y + D +D+ W + +P +S+KD P + + +
Sbjct: 120 TDDACICYVVSSTYVPGTQIDINPLDPELDLPWDCPE--VPLISDKDAKAPTVAEARA 175
>gi|10179846|gb|AAG13911.1|AF263245_7 TDP-4-keto-6-deoxyhexose 3,5-epimerase [Micromonospora megalomicea
subsp. nigra]
Length = 201
Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats.
Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHF 58
+ I V + F D RG F Y + + +F Q + + S G +RG+HF
Sbjct: 6 LGIEGVFTFTPQTFADERGVFGTAYQEDVFVAALGRPLFPVAQVSTTRS-RRGVVRGVHF 64
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
P + AK V C GR D AVDIR SPT+G +E+SA + + +Y+P G H F++
Sbjct: 65 TTMPGSMAKYVYCARGRAMDFAVDIRPGSPTFGRAEPVELSAESMVGLYLPVGMGHLFVS 124
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
LE +T ++Y ++ Y + + V D + + P+ + +SE+D+ P L +
Sbjct: 125 LEDDTTLVYLMSAGYVPDKERAVHPLDPELAL--PIPADLDLVMSERDRVAPTLREA 179
>gi|296394659|ref|YP_003659543.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Segniliparus rotundus DSM
44985]
gi|296181806|gb|ADG98712.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Segniliparus rotundus DSM
44985]
Length = 199
Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats.
Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 11/185 (5%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + D RG ++ + + L+E G Q N S S G +RG+H
Sbjct: 7 LPIAGAWEIIPELHPDDRGVNAELFRASALREATGRDFTTAQCNCSIS-KAGVLRGVHLA 65
Query: 60 RPPYA-----QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
P Q K V +G FD+ VD+R SPT+G W ++ +S + + G H
Sbjct: 66 LSPDGALEGGQEKYVTATSGMAFDVVVDVRSGSPTFGAWEAVLLSGERRNAVLLSAGLGH 125
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLP 170
+ LE +T + Y + Y + + D ++ I WP D TI S++D+ P
Sbjct: 126 AVLALEDDTVLTYLCSQEYDPGRERALDALDPALAIAWPRTDSRGRTIDFLRSDRDRAAP 185
Query: 171 FLNQI 175
L Q
Sbjct: 186 SLAQA 190
>gi|229578480|ref|YP_002836878.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
Y.G.57.14]
gi|229582928|ref|YP_002841327.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
Y.N.15.51]
gi|228009194|gb|ACP44956.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
Y.G.57.14]
gi|228013644|gb|ACP49405.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
Y.N.15.51]
Length = 178
Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats.
Identities = 62/172 (36%), Positives = 97/172 (56%), Gaps = 9/172 (5%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V ++K + F D+RG+F + + +++ + Q N SFS G +RGLH+Q PP
Sbjct: 11 GVILIKPKAFPDNRGYFKEIFKESEFRKMNIPTPL-QANVSFS-KPGVVRGLHYQLPPKE 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q K+V + GRI D+AVDIR+ S ++G +V E++ +N ++IP GFAHGF LE +T
Sbjct: 69 QGKIVTVMKGRIIDVAVDIRKKSKSFGKYVYAELNEDNHYMLWIPPGFAHGFQALEDSTV 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ + + YS H+ + + I WP+ I VSEKD P L + +
Sbjct: 129 LYFVTHNEYSSYHERCINYT----MIDWPIKSVI---VSEKDAKCPPLERAE 173
>gi|254246150|ref|ZP_04939471.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia cenocepacia
PC184]
gi|124870926|gb|EAY62642.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia cenocepacia
PC184]
Length = 136
Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats.
Identities = 58/136 (42%), Positives = 86/136 (63%), Gaps = 4/136 (2%)
Query: 41 QDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISA 100
QDNHS S G +RGLH+Q +AQ KLVR + G +FD+AVDIR++SP +G WV + +S
Sbjct: 2 QDNHSRSSK-GVLRGLHYQIQ-HAQGKLVRVVEGEVFDVAVDIRKDSPNFGKWVGVVLSN 59
Query: 101 NNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILP 160
+N Q+++P GFAHGF+ L + +YK TD++ EH+ + W D I I WP+ P
Sbjct: 60 DNHRQLWVPPGFAHGFVVLSEAAQFLYKTTDYWFPEHERSIVWNDPEIGIEWPI--DFEP 117
Query: 161 SVSEKDQNLPFLNQID 176
++ KD L++ +
Sbjct: 118 LLAAKDAAGKRLSEAE 133
>gi|218528839|ref|YP_002419655.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium
chloromethanicum CM4]
gi|218521142|gb|ACK81727.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium
chloromethanicum CM4]
Length = 177
Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats.
Identities = 59/170 (34%), Positives = 90/170 (52%), Gaps = 3/170 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + + + D RG+F++T E GL F Q + SF+ GT+RG+HF +
Sbjct: 6 LALPSLFRVVPEPHADERGFFARTQCESEFAERGLVGHFTQSSVSFNHRRGTVRGMHFSK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+A+ KLVRC G I D +D+R +SPTY S+ +SA N +YIP G AHGF TL
Sbjct: 66 LPHAETKLVRCTGGAIHDAVIDLRPDSPTYLRTASVTLSAANRHALYIPAGLAHGFQTLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
+ E++Y + + GV W D + + WP T+ ++ +D P
Sbjct: 126 DDAEILYMIDRPFVASAADGVRWDDPAFGLAWPEPVTV---IAPRDLAFP 172
>gi|148272192|ref|YP_001221753.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147830122|emb|CAN01051.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 201
Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats.
Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 3/173 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + + + D RG F + Y L+ + G + Q N S S G +RG+HF
Sbjct: 6 LAVPDGYEITPVQRADDRGVFLEWYRFDELERVVGHRLDLRQANMSVS-KRGVVRGVHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V+ ++G + D +DIR SPT+G W S+ + +YI G H F+ L
Sbjct: 65 DVPRGQAKYVKAVSGAVLDFVIDIRVGSPTFGQWDSVRLDTETHKAVYISEGLGHCFVAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ V Y V+D Y+ + G+ D + + +P + +S KD P L
Sbjct: 125 TDDAAVTYLVSDVYNPGAEHGITPLDPELGLVFP-EEAGEALLSPKDLEAPTL 176
>gi|62511683|gb|AAX84430.1| RfbD [Xylella fastidiosa]
gi|62511685|gb|AAX84431.1| RfbD [Xylella fastidiosa]
gi|62511687|gb|AAX84432.1| RfbD [Xylella fastidiosa]
gi|62511689|gb|AAX84433.1| RfbD [Xylella fastidiosa]
gi|62511691|gb|AAX84434.1| RfbD [Xylella fastidiosa]
gi|62511693|gb|AAX84435.1| RfbD [Xylella fastidiosa]
Length = 143
Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats.
Identities = 62/145 (42%), Positives = 88/145 (60%), Gaps = 2/145 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F+D+RG F + ++++ + G+ FVQ N S S G +RGLH+Q P Q KLV +
Sbjct: 1 FDDARGEFFEAWNAECFERQGMSSRFVQSNVSISM-YGVLRGLHYQW-PRPQGKLVGVLE 58
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G ++D+AVDIRR SP YG WV++ +SA N Q++IP GFAHGF+ L Y TD Y
Sbjct: 59 GEVYDVAVDIRRGSPHYGRWVAVLLSAKNKRQLWIPEGFAHGFVVLSERAVFNYLCTDVY 118
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTI 158
E D+G+ W D I + WP+ +
Sbjct: 119 VKEADAGIRWNDAVIGVDWPIAAPL 143
>gi|290956845|ref|YP_003488027.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces scabiei 87.22]
gi|260646371|emb|CBG69466.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces scabiei
87.22]
Length = 187
Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 95/175 (54%), Gaps = 6/175 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
I+ + + + D RG+F +T+ + +++ +GL F+QD+ S S G +RGLH +
Sbjct: 8 EISGAYLFEPTPYADERGFFCRTFDADVVRSVGLDPHAFLQDSLSRSA-GGVVRGLHLRS 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AKLVRC GRIFD+ VD+R SPTY E+S +YIP G AHGF L
Sbjct: 67 G-AGEAKLVRCSYGRIFDVVVDLRPGSPTYLARAFFELSGETQTTLYIPAGCAHGFQALT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ Y++ + D +A+ D + + WPL T SVSE+D+ P L ++
Sbjct: 126 PTADTSYRIDRPHDPSEDVTIAFDDPELAVPWPLPVT---SVSERDRKAPGLAEV 177
>gi|4210934|gb|AAD12169.1| epimerase [Streptomyces fradiae]
Length = 205
Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 4/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I +++ D RG F + S + L G Q N + S G G+HF
Sbjct: 8 LGIEGAWVIQPEIHPDRRGEFHAWFQSSEFRRLTGHSFSVPQVNIAVS-RKGAAAGIHFS 66
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK C+ G ++ VDIR SPTYG W ++ + N +Y+P G F+ L
Sbjct: 67 EVPPGQAKYSACVQGAGVEVVVDIRLGSPTYGQWRAVPVDEYNRTAVYVPAGLGRAFVAL 126
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T ++Y + Y+ + V D + I WP + + +SE+D P L +
Sbjct: 127 TDRTTLVYLCSSEYAARREHAVNPLDPDLAIAWP--EDVELLLSERDTRAPTLAEA 180
>gi|256004336|ref|ZP_05429318.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum DSM
2360]
gi|255991770|gb|EEU01870.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium thermocellum DSM
2360]
Length = 139
Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats.
Identities = 64/140 (45%), Positives = 92/140 (65%), Gaps = 3/140 (2%)
Query: 37 DVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSL 96
FVQDNH S G +RG+HFQR + Q +LVR I G+++D+AVD+R+NSPT+G W +
Sbjct: 1 MEFVQDNHIKS-RIGVLRGIHFQRK-FPQGRLVRVIKGKVYDVAVDLRKNSPTFGKWYGI 58
Query: 97 EISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD 156
E+SA N YIP F H F+TLE +TEV+ K T+ Y E +SG+ + D ++I WP ++
Sbjct: 59 ELSAENKKMFYIPENFGHAFLTLEDDTEVLCKTTNVYRPEFESGIIYNDPELNIDWPQIE 118
Query: 157 TILPSVSEKDQNLPFLNQID 176
+ +SEKD+NLP +
Sbjct: 119 GDI-VLSEKDKNLPTFKNAE 137
>gi|229584466|ref|YP_002842967.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
M.16.27]
gi|228019515|gb|ACP54922.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
M.16.27]
Length = 176
Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats.
Identities = 60/172 (34%), Positives = 96/172 (55%), Gaps = 9/172 (5%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
+ ++K + F D RG+F + + S+ + + VQ N SFS G +RGLH+Q P
Sbjct: 11 GIVLIKPKVFPDKRGFFLEVFKSEDFTKAEIP-NIVQVNMSFSLK-GVVRGLHYQITPKE 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLV G+I D+AVD+R++SPT+G +V +E++ N ++IP GFAHGF LE +
Sbjct: 69 QGKLVFVPKGKILDVAVDLRKSSPTFGKYVKVELNDENHYILWIPPGFAHGFQALEDSIV 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
V + + YS H+ V + + WP+ + +S+KD P L + +
Sbjct: 129 VYFLTHNEYSKSHERCVNYS----YVDWPIKE---FIISDKDLQCPPLEKAE 173
>gi|240137353|ref|YP_002961822.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
AM1]
gi|240007319|gb|ACS38545.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methylobacterium extorquens
AM1]
Length = 177
Score = 197 bits (503), Expect = 5e-49, Method: Composition-based stats.
Identities = 58/170 (34%), Positives = 89/170 (52%), Gaps = 3/170 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + + + D RG+F++T E GL F Q + SF+ GT+RG+HF +
Sbjct: 6 LALPGLFRVVPEPHADERGFFARTQCESEFAERGLVGRFTQSSVSFNHRRGTVRGMHFSK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+A+ KLVRC G I D +D+R +SPTY S+ +SA N +YIP G AHGF TL
Sbjct: 66 LPHAETKLVRCTGGAIHDAVIDLRPDSPTYLRTASVTLSATNRHALYIPAGLAHGFQTLS 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
+TE++Y + + GV W D + + W + ++ +D P
Sbjct: 126 DDTEILYMIDRPFVASAADGVRWDDPAFGLAW---LEPVTVIAPRDLAFP 172
>gi|254431562|ref|ZP_05045265.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanobium sp. PCC 7001]
gi|197626015|gb|EDY38574.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cyanobium sp. PCC 7001]
Length = 179
Score = 197 bits (503), Expect = 5e-49, Method: Composition-based stats.
Identities = 64/173 (36%), Positives = 89/173 (51%), Gaps = 3/173 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ + L++ F D RG F + + + Q N S + G IRGLH Q+ P
Sbjct: 10 LAGLVELRSTAFTDGRGSFLNAFRLEEMHAWWGHRAVHQINVSRTERVGAIRGLHGQQGP 69
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AKLVRC+ GR+FD+AVD+R S T G W SLE++ G IP G HGF LE
Sbjct: 70 TPEAKLVRCLRGRVFDVAVDVRPGSSTRGQWRSLELTPEAGNAWLIPEGVLHGFQVLEAG 129
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+E++Y + Y GV W D + I WPL +S++DQ LP L +
Sbjct: 130 SELLYVHSAPYRPGDQVGVVWNDPELAIAWPLP---ALDLSQRDQQLPLLAAL 179
>gi|62511695|gb|AAX84436.1| RfbD [Xylella fastidiosa]
gi|62511699|gb|AAX84438.1| RfbD [Xylella fastidiosa]
Length = 143
Score = 197 bits (503), Expect = 5e-49, Method: Composition-based stats.
Identities = 60/145 (41%), Positives = 87/145 (60%), Gaps = 2/145 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F+D+RG F + ++++ + G+ FVQ N S S G +RGLH+Q P Q KLV +
Sbjct: 1 FDDARGEFFEAWNAECFERQGMSSRFVQSNVSISM-YGVLRGLHYQW-PRPQGKLVGVLE 58
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G ++D+AVDIR SP YG WV++ +SA N Q++IP GFAHGF+ L Y TD Y
Sbjct: 59 GEVYDVAVDIRLGSPHYGRWVAVLLSAKNKRQLWIPEGFAHGFVVLSERAVFNYLCTDVY 118
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTI 158
E D+G+ W D + + WP+ +
Sbjct: 119 VKEADAGIRWNDAVLGVDWPIATPL 143
>gi|62511665|gb|AAX84421.1| RfbD [Xylella fastidiosa]
gi|62511667|gb|AAX84422.1| RfbD [Xylella fastidiosa]
gi|62511669|gb|AAX84423.1| RfbD [Xylella fastidiosa]
gi|62511671|gb|AAX84424.1| RfbD [Xylella fastidiosa]
gi|62511673|gb|AAX84425.1| RfbD [Xylella fastidiosa]
gi|62511675|gb|AAX84426.1| RfbD [Xylella fastidiosa]
gi|62511677|gb|AAX84427.1| RfbD [Xylella fastidiosa]
gi|62511679|gb|AAX84428.1| RfbD [Xylella fastidiosa]
gi|62511681|gb|AAX84429.1| RfbD [Xylella fastidiosa]
Length = 143
Score = 197 bits (503), Expect = 5e-49, Method: Composition-based stats.
Identities = 62/145 (42%), Positives = 88/145 (60%), Gaps = 2/145 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F+D+RG F + ++++ + G+ FVQ N S S G +RGLH+Q P Q KLV +
Sbjct: 1 FDDARGEFFEVWNAECFEHQGMSSRFVQSNVSISI-YGVLRGLHYQW-PRPQGKLVGVLE 58
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G ++D+AVDIRR SP YG WV++ +SA N Q++IP GFAHGF+ L Y TD Y
Sbjct: 59 GEVYDVAVDIRRGSPHYGRWVAVLLSAKNKRQLWIPEGFAHGFVVLSERAVFNYLCTDVY 118
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTI 158
E D+G+ W D I + WP+ +
Sbjct: 119 VKEADAGIRWNDAVIGVDWPIAAPL 143
>gi|120401240|ref|YP_951069.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium vanbaalenii
PYR-1]
gi|119954058|gb|ABM11063.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium vanbaalenii
PYR-1]
Length = 184
Score = 197 bits (502), Expect = 6e-49, Method: Composition-based stats.
Identities = 61/178 (34%), Positives = 88/178 (49%), Gaps = 9/178 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL----GLQDVFVQDNHSFSFDCGTIRGLH 57
++ V +L F D RG F++T+ + L GL FVQD+ S S G IRG+H
Sbjct: 7 DLADVLVLTPTPFRDERGLFTRTFDAALFDAHLGTPGLSARFVQDSQSRSVR-GVIRGMH 65
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
+ +AKLVRC G I D+ VDIR S T+G + + N+ +Y+P GF HGF
Sbjct: 66 GRSG-RGEAKLVRCAHGAIHDVLVDIRPGSVTFGRQQAFLLDDNDFRHLYVPPGFLHGFQ 124
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
L +V Y++ + + VA D + I WPL I VS +D+ P +
Sbjct: 125 ALTATADVCYRIDRPHDPSENLAVAHDDPDLAIDWPLAGAI---VSAQDRRAPRWADL 179
>gi|62361812|gb|AAX81442.1| RfbD [Xylella fastidiosa]
gi|62511697|gb|AAX84437.1| RfbD [Xylella fastidiosa]
gi|62511701|gb|AAX84439.1| RfbD [Xylella fastidiosa]
gi|62511703|gb|AAX84440.1| RfbD [Xylella fastidiosa]
gi|62511705|gb|AAX84441.1| RfbD [Xylella fastidiosa]
gi|62511707|gb|AAX84442.1| RfbD [Xylella fastidiosa]
gi|62511709|gb|AAX84443.1| RfbD [Xylella fastidiosa]
gi|62511713|gb|AAX84445.1| RfbD [Xylella fastidiosa]
Length = 143
Score = 197 bits (502), Expect = 6e-49, Method: Composition-based stats.
Identities = 61/145 (42%), Positives = 87/145 (60%), Gaps = 2/145 (1%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F+D+RG F + ++++ + G+ FVQ N S S G +RGLH+Q P Q KLV +
Sbjct: 1 FDDARGEFFEAWNAECFERQGMSSRFVQSNVSISM-YGVLRGLHYQW-PRPQGKLVGVLE 58
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G ++D+AVDIR SP YG WV++ +SA N Q++IP GFAHGF+ L Y TD Y
Sbjct: 59 GEVYDVAVDIRLGSPHYGRWVAVLLSAKNKRQLWIPEGFAHGFVVLSERAVFNYLCTDVY 118
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTI 158
E D+G+ W D I + WP+ +
Sbjct: 119 VKEADAGIRWNDAVIGVDWPIAAPL 143
>gi|22255843|gb|AAM94768.1| CalS1 [Micromonospora echinospora]
Length = 190
Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 5/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I ++ + D RG F + Y + E G Q N S S G IRG+H
Sbjct: 6 LTIEGSWLVTPEQHHDDRGLFLEWYQADRFTEAVGRPFRVAQSNVSVSGR-GVIRGIHLV 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P Q K + C++G + D+ VD+R SPT+G W + + + +++ G H F L
Sbjct: 65 DVPPGQDKYITCVSGAVLDVVVDLRVGSPTFGRWEGVRLDDVDRRAVHLDAGLGHAFCAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
V+Y + Y + V D + I WP +S +D + Q
Sbjct: 125 TEPATVVYLCSSPYDPAAERTVNPLDPELGIAWPAGPR---RLSPRDATAQNVAQA 177
>gi|315636134|ref|ZP_07891388.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Arcobacter butzleri JV22]
gi|315479495|gb|EFU70174.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Arcobacter butzleri JV22]
Length = 190
Score = 197 bits (501), Expect = 8e-49, Method: Composition-based stats.
Identities = 62/183 (33%), Positives = 103/183 (56%), Gaps = 3/183 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + + + +D+RG+ +++ + LG + F QDN S+S G IRGLH
Sbjct: 6 LEIPDLVLCEPTFHKDNRGFVYESFKKESFNNFLGFEVDFCQDNISYS-TYGVIRGLHTN 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Y+Q+KLV + G+I D+AVD R S ++G VS+E+++ Q++IP GF HGF L
Sbjct: 65 TLIYSQSKLVNVLKGKILDVAVDFRVGSLSFGKVVSMELNSEENKQLFIPRGFLHGFSVL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ V+ K+ ++++ GV + D+ ++I W + + VSE D+NL I SPF
Sbjct: 125 SKDALVMIKIDRYFALGESIGVKYDDEDLNIDWKIKKESV-IVSEADKNLLAFKDIKSPF 183
Query: 180 EYD 182
Y+
Sbjct: 184 IYN 186
>gi|310778609|ref|YP_003966942.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ilyobacter polytropus DSM
2926]
gi|309747932|gb|ADO82594.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ilyobacter polytropus DSM
2926]
Length = 180
Score = 197 bits (501), Expect = 8e-49, Method: Composition-based stats.
Identities = 70/180 (38%), Positives = 102/180 (56%), Gaps = 8/180 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ ED RG F++TY+ L K L+ F + +S S IRG+HFQ P
Sbjct: 7 EIKGLFIIEDFHVEDERGSFTKTYNRSLFKNNKLKGKFKESFYSVS-KRDVIRGMHFQLP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ Q K+V G+I D+ +D+R+ S TYG S+E+S +YIP G AHGF +LE
Sbjct: 66 PHDQDKMVYVTRGKIIDVILDLRKKSKTYGQVFSIELSEEKRNSLYIPKGCAHGFKSLED 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI--DSPF 179
++ V+Y VT +S E DSG+ W S W T +P +SEKD+NL ++ +PF
Sbjct: 126 DSTVVYDVTTVHSPESDSGIRWD--SFGYDW---KTNIPLMSEKDKNLMEFSEFKKKNPF 180
>gi|227827252|ref|YP_002829031.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
M.14.25]
gi|238619412|ref|YP_002914237.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus M.16.4]
gi|227459047|gb|ACP37733.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
M.14.25]
gi|238380481|gb|ACR41569.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus M.16.4]
gi|323474221|gb|ADX84827.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus REY15A]
gi|323476721|gb|ADX81959.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
HVE10/4]
Length = 176
Score = 197 bits (501), Expect = 8e-49, Method: Composition-based stats.
Identities = 59/172 (34%), Positives = 95/172 (55%), Gaps = 9/172 (5%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
+ ++K + F D RG+F + + S+ + + VQ N S S G +RGLH+Q P
Sbjct: 11 GIVLIKPKVFPDKRGFFLEVFKSEDFTKAEIP-NIVQVNMSSSLK-GVVRGLHYQITPKE 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLV G+I D+AVD+R++SPT+G +V +E++ N ++IP GFAHGF LE +
Sbjct: 69 QGKLVFVPKGKILDVAVDLRKSSPTFGKYVKVELNDENHYILWIPPGFAHGFQALEDSIV 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
V + + YS H+ V + + WP+ + +S+KD P L + +
Sbjct: 129 VYFLTHNEYSKSHERCVNYS----YVDWPIKE---FIISDKDLQCPPLEKAE 173
>gi|77918733|ref|YP_356548.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pelobacter carbinolicus DSM
2380]
gi|77544816|gb|ABA88378.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pelobacter carbinolicus DSM
2380]
Length = 181
Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats.
Identities = 62/177 (35%), Positives = 89/177 (50%), Gaps = 6/177 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ + D RG F +T+ + GL + ++ S S G +RGLHFQ PP
Sbjct: 10 LKGCYEILPAVLGDERGSFIKTFHAPAFSRHGLCTDWREEYFSVS-QQGVLRGLHFQTPP 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ AKLV C+ G + D VD+RR SP YG ++E++ + +YIP G AHGF L
Sbjct: 69 HDHAKLVYCVGGAVLDAVVDLRRESPDYGQHATIELNPDKANMLYIPAGMAHGFYVLRGP 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
++YKV+ YS HD G+ W S I WP + P +S +D +SPF
Sbjct: 129 ATMMYKVSTVYSPGHDRGILWN--SAGIPWPDDN---PLISPRDAAFEAFCDFESPF 180
>gi|254820400|ref|ZP_05225401.1| hypothetical protein MintA_10746 [Mycobacterium intracellulare ATCC
13950]
Length = 190
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 61/179 (34%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I+ D RG+ S+++S++ GL Q N F++ GT+RGL+ + P
Sbjct: 7 KVAGVTIIDFELNHDHRGFSSRSFSARDFANHGLDFEVAQTNIYFNYTRGTVRGLYRRVP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+A+AKLVRC G I +AVD+R +S T+G V +++SA++ +++P A+GF T
Sbjct: 67 PHAEAKLVRCTRGAIAAVAVDVRPDSLTHGDHVMVQLSADDQRTLFLPPYVAYGFQTQVD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+TEV + V+ Y++ + G+ W D I+WP+ T+ +SE+D + P +P E
Sbjct: 127 DTEVTFHVSGQYAMADEQGIRWDDPEFGISWPIPVTV---ISEQDASWPSRKSRLAPVE 182
>gi|329940085|ref|ZP_08289367.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces
griseoaurantiacus M045]
gi|329300911|gb|EGG44807.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces
griseoaurantiacus M045]
Length = 185
Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 58/174 (33%), Positives = 94/174 (54%), Gaps = 6/174 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
+ + + + D RG+F +T+ + +L+ +GL FVQD+ S S G +RG+H +
Sbjct: 9 VAGAYLFRPTPYADERGFFCRTFDADVLRSVGLDPHAFVQDSLSRSAR-GVLRGMHLRSG 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AKLVRC +G++FD+ VD+R +SPTY E+S +Y+P G AHGF L
Sbjct: 68 -AGEAKLVRCSSGKVFDVVVDLRPDSPTYLGRAFFELSGETQETLYVPAGCAHGFQALTA 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ Y++ + D + + D + I WPL T SVS +D+ P L ++
Sbjct: 127 TADTSYRIDRPHDPAEDVTIRYDDPELAIPWPLPVT---SVSPRDREAPGLAEV 177
>gi|145594749|ref|YP_001159046.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salinispora tropica CNB-440]
gi|145304086|gb|ABP54668.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salinispora tropica CNB-440]
Length = 203
Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 5/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHF 58
+ + + F D RG F + G Q NHS S G +RG+H+
Sbjct: 6 LAVQGAFVFTPEVFSDHRGLFVSPFQRLSFTAANGGPILPVAQTNHSMS-RRGVVRGVHY 64
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
P AK V C G DI VD+R SPT+G W ++++++ +Y P G H F++
Sbjct: 65 TSTPPGVAKYVYCAVGEAIDIIVDVRVGSPTFGTWDAVQMNSQEFRAMYFPVGVGHAFVS 124
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L T + Y +T Y EH+ V+ D ++ + P+ + +S++D+ P L +
Sbjct: 125 LADGTVMSYMLTGSYVPEHERVVSAFDPALGL--PIPTDLETIISDRDRVGPSLAE 178
>gi|62511711|gb|AAX84444.1| RfbD [Xylella fastidiosa]
Length = 141
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 60/143 (41%), Positives = 85/143 (59%), Gaps = 2/143 (1%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG F + ++++ + G+ FVQ N S S G +RGLH+Q P Q KLV + G
Sbjct: 1 DARGEFFEAWNAECFERQGMSSRFVQSNVSISM-YGVLRGLHYQW-PRPQGKLVGVLEGE 58
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
++D+AVDIR SP YG WV++ +SA N Q++IP GFAHGF+ L Y TD Y
Sbjct: 59 VYDVAVDIRLGSPHYGRWVAVLLSAKNKRQLWIPEGFAHGFVVLSERAVFNYLCTDVYVK 118
Query: 136 EHDSGVAWQDKSIDITWPLLDTI 158
E D+G+ W D I + WP+ +
Sbjct: 119 EADAGIRWNDAVIGVDWPIAAPL 141
>gi|172039920|ref|YP_001799634.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium urealyticum
DSM 7109]
gi|171851224|emb|CAQ04200.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium urealyticum
DSM 7109]
Length = 234
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 3/178 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + R F D+RG F + + + E G Q N S S +RG+H
Sbjct: 24 LPIAGAWLFAPRVFGDARGSFHEGFHAAQFTEHLGYPFDVAQANVSRSSR-DVVRGIHLA 82
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+AG + D+ VD+R SPT+G V + +S +N +++P G HGF+
Sbjct: 83 EVPPGQAKFVSCLAGEVVDVLVDLRVGSPTFGKHVKVALSESNNYAVHVPIGVGHGFVAR 142
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ Y VT+ Y+ + + GV D + I W + D +S+KD P L ++ +
Sbjct: 143 SETAVLNYLVTEAYNPDREFGVDPFDPELGIDWGV-DRADAVLSDKDAAAPALAEVHA 199
>gi|25026899|ref|NP_736953.1| putative dTDP-4-keto-6-deoxyglucose-3, 5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
efficiens YS-314]
gi|259506038|ref|ZP_05748940.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Corynebacterium efficiens YS-314]
gi|23492179|dbj|BAC17153.1| putative dTDP-4-keto-6-deoxyglucose-3,5- epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
efficiens YS-314]
gi|259166374|gb|EEW50928.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Corynebacterium efficiens YS-314]
Length = 459
Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 64/175 (36%), Positives = 90/175 (51%), Gaps = 11/175 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I+ + I+ D+RGWF + + + + +GL D VQ+N SF+ GT RGLH
Sbjct: 15 IDGLLIVDFPVHGDNRGWFKENWQRQKMLAVGLPDFGPVQNNMSFNATAGTTRGLH--AE 72
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K V GR+F D+R S TYG V+ EI+ + G +Y+P G A+GF LE
Sbjct: 73 PWD--KFVSVGTGRVFGAWCDLREGSATYGAVVTQEITPDIG--VYVPRGVANGFQALED 128
Query: 122 NTEVIYKVTDFYSVEHDSG-VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T Y V D +S + V D ++ I WPL L +SEKD+N P L
Sbjct: 129 ETLYTYLVNDHWSPDAQYSNVNLADPALGIEWPLP---LTEMSEKDKNHPMLVDA 180
>gi|284997190|ref|YP_003418957.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
L.D.8.5]
gi|284445085|gb|ADB86587.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus islandicus
L.D.8.5]
Length = 176
Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 61/172 (35%), Positives = 96/172 (55%), Gaps = 9/172 (5%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
+ ++K + F D RG+F + + S+ + + VQ N SFSF G +RGLH+Q P
Sbjct: 11 GIVLIKPKVFPDKRGFFLEVFKSEDFTKAEIP-NIVQTNMSFSFK-GVVRGLHYQITPKE 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLV G+I D+AVD+R++SPT+G +V +E++ N ++IP GFAHGF LE +
Sbjct: 69 QGKLVFVPKGKILDVAVDLRKSSPTFGKYVKVELNDENHYILWIPPGFAHGFQALEDSIV 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
V + + YS + V + + WP+ + +S+KD P L + D
Sbjct: 129 VYFLTHNEYSKSDERCVNYS----YVDWPIKE---FIISDKDSQCPPLEKAD 173
>gi|256790051|ref|ZP_05528482.1| epimerase [Streptomyces lividans TK24]
gi|289773932|ref|ZP_06533310.1| epimerase [Streptomyces lividans TK24]
gi|289704131|gb|EFD71560.1| epimerase [Streptomyces lividans TK24]
Length = 183
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 63/175 (36%), Positives = 95/175 (54%), Gaps = 6/175 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGL-QDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ + + D+RG+F +T+ + +++ +GL FVQD+ S S G +RGLH +
Sbjct: 8 EISGAYLFRPTPHADARGFFCRTFDADVVRSVGLDPAAFVQDSVSRSVR-GVLRGLHLRS 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AKLVRC GRIFD VD+R +SPTY E+S +YIP G AHGF +L
Sbjct: 67 G-AGEAKLVRCSNGRIFDAVVDLRADSPTYLGRAFFELSGETQTTLYIPAGCAHGFQSLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
++V Y++ + D +A+ D + I WPL + SVS +D+ P L
Sbjct: 126 ETSDVSYRIDRAHDPAEDVTIAFDDPDLGIDWPLP---VASVSPRDREAPSLADF 177
>gi|225025750|ref|ZP_03714942.1| hypothetical protein EIKCOROL_02654 [Eikenella corrodens ATCC
23834]
gi|224941531|gb|EEG22740.1| hypothetical protein EIKCOROL_02654 [Eikenella corrodens ATCC
23834]
Length = 136
Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 60/135 (44%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Query: 41 QDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISA 100
Q NHS S +RGLH+Q Q KLVR IAG +FD+A+D+RR+SPT+G W +SA
Sbjct: 2 QGNHSKSGQA-VLRGLHYQTEN-TQGKLVRVIAGEVFDVAIDLRRSSPTFGQWAGAILSA 59
Query: 101 NNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILP 160
N Q+++P GFAHGF L E +YK TD+Y+ + + + W D ++ I WPL P
Sbjct: 60 ENKHQLWVPEGFAHGFYVLSEEAEFVYKCTDYYNPKAEHSLLWNDPAVGIEWPLQGE--P 117
Query: 161 SVSEKDQNLPFLNQI 175
+S KD LNQ
Sbjct: 118 KLSPKDLAGKLLNQA 132
>gi|295839154|ref|ZP_06826087.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp. SPB74]
gi|197695604|gb|EDY42537.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp. SPB74]
Length = 205
Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats.
Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 5/168 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHF 58
+ ++ FED RG F+ Y E +F Q NHS S GT+RG+H+
Sbjct: 10 LAVSGAYAFTPPVFEDERGLFTSPYQEPAFVEALGHPLFRVAQSNHSKS-RRGTVRGIHY 68
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
P AK V C GR DI VDIR SPT+G W S + +Y P G H F+
Sbjct: 69 TVTPPGVAKYVYCARGRAIDIVVDIRVGSPTFGRWDSAVLDPEGFGAMYFPVGVGHAFIA 128
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
LE +T + Y ++ Y +++ ++ D ++ + P+ + P +S +D
Sbjct: 129 LEDDTVMSYMLSGSYEADNELSLSPLDPALGL--PIPTDVEPLLSARD 174
>gi|48425092|pdb|1OFN|A Chain A, Purification, Crystallisation And Preliminary Structural
Studies Of Dtdp-4-Keto-6-Deoxy-Glucose-5-Epimerase
(Evad) From Amycolatopsis Orientalis; The Fourth Enzyme
In The Dtdp-L-Epivancosamine Biosynthetic Pathway.
gi|48425093|pdb|1OFN|B Chain B, Purification, Crystallisation And Preliminary Structural
Studies Of Dtdp-4-Keto-6-Deoxy-Glucose-5-Epimerase
(Evad) From Amycolatopsis Orientalis; The Fourth Enzyme
In The Dtdp-L-Epivancosamine Biosynthetic Pathway.
gi|49258364|pdb|1OI6|A Chain A, Structure Determination Of The Tmp-Complex Of Evad
gi|49258365|pdb|1OI6|B Chain B, Structure Determination Of The Tmp-Complex Of Evad
gi|2894174|emb|CAA11781.1| PCZA361.16 [Amycolatopsis orientalis]
Length = 205
Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHF 58
+ ++ R F D RG Y + E +F Q HS S G +RG+H+
Sbjct: 6 LAVDGAIEFTPRVFADDRGLLILPYQEEAFVEAHGGPLFRVAQTIHSMS-KRGVVRGIHY 64
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
P AK V C G+ DI +DIR SPT+G W S+ + + +Y+P G H F+
Sbjct: 65 TVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVA 124
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
LE +T + Y ++ Y + + ++ D ++ + P+ + P VS++D+ L +
Sbjct: 125 LEDDTVMSYMLSRSYVTQDELALSALDPALGL--PIDIGVEPIVSDRDRVAITLAEA 179
>gi|120402375|ref|YP_952204.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium vanbaalenii
PYR-1]
gi|119955193|gb|ABM12198.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium vanbaalenii
PYR-1]
Length = 207
Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats.
Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 6/182 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + D+RG F + ++ + G + Q N S S G +RG+HF
Sbjct: 6 LTIPGAWEITPVVHTDARGAFFEWFTDAGFTAITGHRLDLRQANCSVS-RAGVLRGVHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ P +QAK V C+ G + D+ VDIR SPT+G W ++ + +Y+ G H F+ L
Sbjct: 65 QLPPSQAKYVSCVRGAVVDVVVDIRVGSPTFGRWDAVVLDDETHRSVYLSEGLGHAFLAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQI 175
++ V Y + Y + + D +++I W +S++D+ P L Q
Sbjct: 125 HDDSVVTYLCSAGYDPAREHTIDPLDPALEIDWNAWPSRAADGELILSDRDRAAPSLEQA 184
Query: 176 DS 177
+
Sbjct: 185 RT 186
>gi|237786450|ref|YP_002907155.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium
kroppenstedtii DSM 44385]
gi|237759362|gb|ACR18612.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium
kroppenstedtii DSM 44385]
Length = 237
Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats.
Identities = 60/187 (32%), Positives = 83/187 (44%), Gaps = 13/187 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I D RG F + Y + E G Q N S S G +RG+H
Sbjct: 21 IPGVFIFYPTVHADQRGSFHEWYKADDFAEALGYPFFPEQANMSVSAR-GVVRGIHLAEV 79
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P QAK+V C AG + DI VD+R+ S TYG + + ++ +N +Y+P G HGF +
Sbjct: 80 PPGQAKMVTCPAGALSDIIVDLRKGSSTYGKHIVVPLNQDNHAVVYLPVGIGHGFAAHQD 139
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL-----------DTILPSVSEKDQNLP 170
NT Y + Y + GV D ++ I L T+ P SEKD+ P
Sbjct: 140 NTVATYLTSTAYDPSREFGVRITDPALGIDCQALLNSDESSDQHSATVDPIFSEKDRIAP 199
Query: 171 FLNQIDS 177
L +D
Sbjct: 200 LLADVDD 206
>gi|213964897|ref|ZP_03393096.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium amycolatum
SK46]
gi|213952433|gb|EEB63816.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Corynebacterium amycolatum
SK46]
Length = 229
Score = 194 bits (495), Expect = 4e-48, Method: Composition-based stats.
Identities = 69/211 (32%), Positives = 97/211 (45%), Gaps = 21/211 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHF-- 58
+I+ V + DSRG F + Y E G Q N S S G +RGLHF
Sbjct: 11 SIDGVFTFEPVIHGDSRGSFHEWYRLDAFAEATGYPFFPEQANMSVSA-AGVVRGLHFAD 69
Query: 59 ----QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
QAKLV C AG I DIAVD+RR S T+G E+ + +Y+P G H
Sbjct: 70 VSTAPDGHPGQAKLVTCPAGHILDIAVDLRRGSDTFGKVEVFELDSKTRRVVYLPNGIGH 129
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITW------PLLDTILPSVSEKDQN 168
GF++L ++ + Y + Y+ E + V+ QD ++ I L +SE+DQ
Sbjct: 130 GFVSLADDSVLTYLTSTGYNPEAERAVSIQDSTLGIDLAALLAKGGLTEADMILSERDQK 189
Query: 169 LPFLNQIDS-----PFEYDGLPLLSLNMERD 194
P + Q ++ P E+D L NM RD
Sbjct: 190 APTIEQFEAEGNKLPSEFDCKDL--ENMARD 218
>gi|159037934|ref|YP_001537187.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salinispora arenicola
CNS-205]
gi|157916769|gb|ABV98196.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salinispora arenicola
CNS-205]
Length = 200
Score = 194 bits (495), Expect = 4e-48, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQD-NHSFSFDCGTIRGLHF 58
+ I+ D RG F+ Y G V+D +H+ S G +RG+HF
Sbjct: 6 LAIDGAVEFTPSVHRDERGLFASPYQEPAFTATFGWPLFPVRDLSHNVSAR-GVLRGIHF 64
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
P +AK V C G++ D +D+R SPT+GCW S E+ + IYIP G H F++
Sbjct: 65 TSTPPGRAKYVYCPYGKVQDFLIDLRVGSPTFGCWDSTELGGDTCRAIYIPVGVGHAFLS 124
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
L ++ ++Y ++ Y E + ++ D ++ + PL I P S++D+ P L +
Sbjct: 125 LVDDSMIVYAMSKGYVAEDELAISPLDPALGL--PLPAGITPLQSDRDRAAPTLAEA 179
>gi|126030141|pdb|1WA4|A Chain A, Crystal Structure Of The M131f L135a Evad Double Mutant
Length = 205
Score = 194 bits (495), Expect = 4e-48, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHF 58
+ ++ R F D RG Y + E +F Q HS S G +RG+H+
Sbjct: 6 LAVDGAIEFTPRVFADDRGLLILPYQEEAFVEAHGGPLFRVAQTIHSMS-KRGVVRGIHY 64
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
P AK V C G+ DI +DIR SPT+G W S+ + + +Y+P G H F+
Sbjct: 65 TVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVA 124
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
LE +T Y + Y + + ++ D ++ + P+ + P VS++D+ L +
Sbjct: 125 LEDDTVFSYMASRSYVTQDELALSALDPALGL--PIDIGVEPIVSDRDRVAITLAEA 179
>gi|48477383|ref|YP_023089.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Picrophilus torridus DSM
9790]
gi|48430031|gb|AAT42896.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Picrophilus torridus DSM
9790]
Length = 178
Score = 194 bits (495), Expect = 4e-48, Method: Composition-based stats.
Identities = 73/178 (41%), Positives = 106/178 (59%), Gaps = 8/178 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+++K +KF+D RG+F + Y + + ELG+++ F Q N S+S RG HFQR
Sbjct: 9 EIEDVKLIKIKKFDDERGFFEELYRNNVFHELGIKNNFNQINLSYS-KKNVFRGFHFQRN 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q KLV I+GRI D A+D+RR S Y V E+ NG ++IP GFAHGF+ LE
Sbjct: 68 PKPQGKLVTVISGRIIDYAIDLRRRSVYYKKHVCYEL--ENGRMLFIPEGFAHGFLALED 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ V+Y T+ + + DSGV + D ++I P +SEKD++L LN++D F
Sbjct: 126 -SYVLYLATNEFDINLDSGVIYNDDELNIKLP----DNIIISEKDRSLKKLNELDIDF 178
>gi|21218943|ref|NP_624722.1| epimerase [Streptomyces coelicolor A3(2)]
gi|6066681|emb|CAB58341.1| putative epimerase [Streptomyces coelicolor A3(2)]
Length = 183
Score = 194 bits (495), Expect = 4e-48, Method: Composition-based stats.
Identities = 63/175 (36%), Positives = 95/175 (54%), Gaps = 6/175 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGL-QDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ + + D+RG+F +T+ + +++ +GL FVQD+ S S G +RGLH +
Sbjct: 8 EISGAYLFRPTPHADARGFFCRTFDADVVRSVGLDPAAFVQDSVSRSVR-GVLRGLHLRS 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AKLVRC GRIFD VD+R +SPTY E+S +YIP G AHGF +L
Sbjct: 67 G-AGEAKLVRCSNGRIFDAVVDLRADSPTYLGRAFFELSGETQTTLYIPAGCAHGFQSLT 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
++V Y++ + D +A+ D + I WPL + SVS +D+ P L
Sbjct: 126 ETSDVSYRIDRAHDPAEDVTIAFDDPDLAIDWPLP---VASVSPRDREAPSLADF 177
>gi|47716693|gb|AAT37542.1| putative NDP-hexose-3,5-epimerase [Streptomyces globisporus]
Length = 190
Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats.
Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 5/172 (2%)
Query: 4 NPVRILKT-RKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
V +L +D RG F ++ + L+ + G Q N+S S T+RG+H
Sbjct: 9 PGVHVLAPWTGSKDERGAFFESLRTDELERVVGHPFEVRQINYSVS-RRNTLRGIHSVTS 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P QAK V C+ G D VD+R SPT+G + S + A +G +Y+P G HGF+TL
Sbjct: 68 PPGQAKYVSCVRGAFRDFVVDLRVGSPTFGQYDSNVLDAESGRAVYVPEGVGHGFLTLTD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ + Y ++ Y + D + + W + P +S+KD++ P L
Sbjct: 128 DACICYVLSSTYVPGTQIDIDPLDPDLALPWGFTEP--PLMSDKDRDAPSLA 177
>gi|15898723|ref|NP_343328.1| dTDP-4-dehydrorhamnose 3,5 epimerase (rfbC-2) [Sulfolobus
solfataricus P2]
gi|284173105|ref|ZP_06387074.1| dTDP-4-dehydrorhamnose 3,5 epimerase (rfbC-2) [Sulfolobus
solfataricus 98/2]
gi|13815196|gb|AAK42118.1| dTDP-4-dehydrorhamnose 3,5 epimerase (rfbC-2) [Sulfolobus
solfataricus P2]
gi|261603216|gb|ACX92819.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus solfataricus 98/2]
Length = 176
Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats.
Identities = 60/172 (34%), Positives = 96/172 (55%), Gaps = 9/172 (5%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
+ ++K + F D RG+F + + S+ + + VQ N SFSF G +RGLH+Q P
Sbjct: 11 GIVLIKPKVFPDKRGFFLEVFKSEDFTKAEIP-NIVQTNMSFSFK-GVVRGLHYQITPKE 68
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q KLV G+I D+A+D+R++SPT+G +V +E++ N ++IP GFAHGF LE +
Sbjct: 69 QGKLVFVPKGKILDVALDLRKSSPTFGKYVKVELNDENHYILWIPPGFAHGFQALEDSIV 128
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
V + + YS + V + + WP+ + +S+KD P L + D
Sbjct: 129 VYFLTHNEYSKSDERCVNYS----YVDWPIKE---FIISDKDSQCPPLEKAD 173
>gi|312622139|ref|YP_004023752.1| dtdp-4-dehydrorhamnose 3,5-epimerase [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202606|gb|ADQ45933.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caldicellulosiruptor
kronotskyensis 2002]
Length = 186
Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats.
Identities = 71/182 (39%), Positives = 96/182 (52%), Gaps = 6/182 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I ED RG F + Y+S + L + + S IRGLHFQ PP
Sbjct: 10 IPGCFEFIPDIKEDRRGAFVKVYNSDFYSSILLNTSIKESYFTIS-HKNVIRGLHFQLPP 68
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y AK+V C+ G I D+ VD+R+ SPTYG + ++A +YIP G AHG+ L
Sbjct: 69 YEVAKIVYCVEGEIMDVVVDLRKGSPTYGKYDIFYLNAQKSNILYIPEGLAHGYCVLSEK 128
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
VIY VT+ YS EHD+G+ W S I WP+ + P +SE+D+NLP +PF+Y
Sbjct: 129 AIVIYNVTNVYSKEHDTGIRWD--SAGIPWPVDN---PILSERDKNLPEFKYFRTPFKYK 183
Query: 183 GL 184
L
Sbjct: 184 DL 185
>gi|91781102|ref|YP_556309.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia xenovorans
LB400]
gi|91693762|gb|ABE36959.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia xenovorans
LB400]
Length = 182
Score = 194 bits (493), Expect = 7e-48, Method: Composition-based stats.
Identities = 64/176 (36%), Positives = 94/176 (53%), Gaps = 5/176 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V++++ D RG ++ +E + FVQ+ HS S + GLH+Q
Sbjct: 9 EIRDVKLIEPCILSDMRGVSFDSFDQDEFEERVARGYRFVQERHSVSLH-NVLCGLHYQI 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVR + G +FD+AVD+RR SPT+G W+S +SA+N Q++IP GFAHGF L
Sbjct: 68 Q-RPQGKLVRVVNGEVFDVAVDLRRWSPTFGRWISARLSASNCRQLWIPPGFAHGFRVLS 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EV+ K T+ VEH+ + W D I I+W L + P S +D + +
Sbjct: 127 DVAEVLCKTTERGFVEHERTLQWDDPDIAISWDLDEA--PITSTRDAAGTSFSTAE 180
>gi|292669427|ref|ZP_06602853.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas noxia ATCC 43541]
gi|292648880|gb|EFF66852.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Selenomonas noxia ATCC 43541]
Length = 182
Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats.
Identities = 70/174 (40%), Positives = 99/174 (56%), Gaps = 7/174 (4%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
VRIL +EDSRG F +T+ ++ ++LGL F ++ S S G +RGLHFQ PP
Sbjct: 15 VRIL-PVVWEDSRGVFIKTFHVEVFRQLGLPTSFAEEYFSVS-RRGVLRGLHFQTPPMDH 72
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
K+V C G + D VD+RR+SPTYG + + ++ G +YIP G AHGF T +
Sbjct: 73 EKIVCCAEGEVTDAVVDLRRSSPTYGKYALFHLKSSEGTMLYIPKGMAHGFYTRSSTALM 132
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+Y+VT Y+ D+G+ W + I W D P +SE+DQ+ P L SPF
Sbjct: 133 LYQVTSVYAPACDAGIRWD--TAGIPW---DVEHPILSERDQSFPALADFVSPF 181
>gi|315937139|gb|ADU56146.1| hypothetical protein CA915-25 [uncultured organism CA915]
Length = 200
Score = 193 bits (492), Expect = 9e-48, Method: Composition-based stats.
Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 3/174 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFD-CGTIRGLHFQRP 61
I+ + + DSRG F+ Y E + +F + S + G +RG+H+
Sbjct: 8 IDGAFRFEPTVYPDSRGLFASPYQDPAFAEALGRPLFPVRDVSHNRSARGVLRGIHYTAV 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P +AK V C G + D +D+R SPTYG W + E+S +N +YIP G H F++L
Sbjct: 68 PPGRAKYVYCPYGEVRDYLIDLRLGSPTYGRWEATELSGDNCRALYIPVGVGHAFLSLRD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
++ V+Y +++ Y ++ V+ D I ++ L + S++D+ P L +
Sbjct: 128 DSVVVYLMSEGYVPANELAVSALDPEIGLS--LPQGVAIQQSDRDRGAPTLAEA 179
>gi|317506042|ref|ZP_07963872.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Segniliparus rugosus ATCC
BAA-974]
gi|316255700|gb|EFV14940.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Segniliparus rugosus ATCC
BAA-974]
Length = 199
Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats.
Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 11/185 (5%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSS-KLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + D RG ++ + + + G Q N S S G +RG+H
Sbjct: 7 LPIAGAWEITPELHSDDRGVNAELFRAGATREATGRDFTTAQVNCSVS-KAGVLRGVHLA 65
Query: 60 RPPYA-----QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
P Q K V +G +FD+ VD+R +SPT+G W ++ +S +++ G H
Sbjct: 66 LGPDGTLAGGQEKYVTVASGSVFDVVVDLRSDSPTFGKWEAVLLSGERRNAVFLSAGLGH 125
Query: 115 GFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLP 170
+ L +T ++Y + Y + V D ++ I WP D I SE+D
Sbjct: 126 AVLALTEDTVLLYLCSSEYDPRLERSVDALDPALAIAWPSKDAHGHAIEFLRSERDHAAL 185
Query: 171 FLNQI 175
L +
Sbjct: 186 RLAEA 190
>gi|609644|gb|AAA88702.1| CDP-3,6-dideoxy-D-glycero-D-glycero-4-hexulose-5-epimerase
[Yersinia pseudotuberculosis]
Length = 187
Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats.
Identities = 68/179 (37%), Positives = 107/179 (59%), Gaps = 6/179 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++I +++ KF DSRG F +T+ S E G+ ++ +S S IRG+HFQ
Sbjct: 15 LDIEGCYLIEFNKFIDSRGTFVKTFHSDFFSENGIVLDMREEFYSISAK-NVIRGMHFQM 73
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
PP KLV C+ G + D+ +DIR++S TYG + S+E+S N L +++P G AHGF++L
Sbjct: 74 PPAEHDKLVYCVNGAVLDVILDIRKDSKTYGEYFSIELSYENSLALWVPKGLAHGFLSLA 133
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
N+ + YK + ++VE DSG+ W S WP+ + P +SEKD +L + ++ DS F
Sbjct: 134 DNSIMFYKTSSVHNVECDSGIKWN--SFGFKWPIDN---PIISEKDNSLCYFDEFDSSF 187
>gi|4218557|emb|CAA09646.1| putative dTDP-4-keto-6-deoxyglucose-2,3-dehydratase [Streptomyces
violaceoruber]
Length = 195
Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 4/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ ++ R++ D RG F ++ + L+ E G Q N+S S T+RG+H
Sbjct: 8 EVPGAYVITPRQWPDPRGTFFESLRTDLVSEAVGRPFEVRQINYSTS-RRNTLRGVHGVL 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P QAK V C+ G + D+ VD+R SPT+G S ++ NG+ +++ G HGF+ L
Sbjct: 67 IPPGQAKYVTCVRGALRDMVVDLRVGSPTFGQSASTLLTPENGVAVHVAEGLGHGFLALT 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+T + Y ++ + + D + + W + P +S KD P L
Sbjct: 127 DDTCISYALSTAHVPGTQFEIDPLDPDLALPWGFDEP--PLLSAKDAGAPSLR 177
>gi|302523922|ref|ZP_07276264.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp. AA4]
gi|302432817|gb|EFL04633.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces sp. AA4]
Length = 182
Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 6/177 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
++ V + D RG F++T+ +++ E GL F QD+ S S G +RG+H +
Sbjct: 7 DLAGVLLFVPEPHHDDRGLFTRTFDTEIAAEHGLNAAAFQQDSQSRS-RLGVLRGMHGRS 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AKLVRC G + D+ VDIR S T+G + + +YIP GF HGF L
Sbjct: 66 G-RGEAKLVRCARGAVHDVLVDIRPGSATFGRQQAFRLDDVEFAHLYIPPGFLHGFQVLT 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+V Y++ + D V + D + I WPL ++ +S +D + +
Sbjct: 125 EYADVCYRIDRPHDPAEDLAVRYDDPDLAIDWPLPVSV---LSARDAAAGTWADLAA 178
>gi|302670473|ref|YP_003830433.1| dTDP-4-dehydrorhamnose 3,5-epimerase RfbC1 [Butyrivibrio
proteoclasticus B316]
gi|302394946|gb|ADL33851.1| dTDP-4-dehydrorhamnose 3,5-epimerase RfbC1 [Butyrivibrio
proteoclasticus B316]
Length = 176
Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats.
Identities = 59/171 (34%), Positives = 99/171 (57%), Gaps = 3/171 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + + K +D RG+FS+ +K+ GL FVQ + S ++ GT+RG+H Q
Sbjct: 6 LLVEGCYLFKRNIPKDERGYFSRIADVNEIKKTGLNAEFVQISASRNYKKGTLRGMHMQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
A+ K + C+ G ++D+ +D+R+ SPTY + S +S NG IYIP G AHGF++L
Sbjct: 66 GTSAEEKYISCVEGEVYDVCLDLRKTSPTYLKYCSAVLSEENGYAIYIPKGCAHGFVSLR 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPF 171
N+++IY +T+ + + + G W D + I WP+L + +S++D N P
Sbjct: 126 DNSQLIYFMTNEHDKQAERGYLWSDPAFSIDWPILPEV---ISDRDNNWPL 173
>gi|284174226|ref|ZP_06388195.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus solfataricus 98/2]
gi|261603035|gb|ACX92638.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfolobus solfataricus 98/2]
Length = 177
Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats.
Identities = 61/173 (35%), Positives = 96/173 (55%), Gaps = 12/173 (6%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
+ ++K F D RG+F + Y S + + +Q N SFS G IRGLH+Q P
Sbjct: 11 GIVLIKPTVFPDKRGFFLELYKSTDFVNIPIP---IQTNMSFSIK-GVIRGLHYQISPKE 66
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q K+V GRI D+AVDIR++S T+G +VS+E++ N ++IP GFAHGF LE +
Sbjct: 67 QGKIVFVPKGRILDVAVDIRKSSKTFGKYVSVELNEENHYLLWIPPGFAHGFQALEDSIV 126
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSIDI-TWPLLDTILPSVSEKDQNLPFLNQID 176
+ + + YS +H+ + + I WP+ + I +S+KD P + + +
Sbjct: 127 IYFITHNQYSPKHERCINYS----YIKDWPIKEAI---LSDKDLQCPPIEKAE 172
>gi|218507928|ref|ZP_03505806.1| dTDP-4-dehydrorhamnose 3,5-epimerase protein [Rhizobium etli Brasil
5]
Length = 136
Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats.
Identities = 65/129 (50%), Positives = 85/129 (65%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + + +F D RG+FS+ + +E FVQDN S S GT+RGLHFQ P
Sbjct: 8 IEGIVAITPPRFGDHRGYFSEVFKDAWFRENVADVTFVQDNESLSAQAGTVRGLHFQISP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLVRC+AGRI D+ VDIR SP+YG W+S E+S + G Q++IP GFAHGF T+E N
Sbjct: 68 FAQGKLVRCLAGRIMDVVVDIRVGSPSYGQWLSQELSPDTGKQLWIPAGFAHGFATIEPN 127
Query: 123 TEVIYKVTD 131
+ + YKVT
Sbjct: 128 SVISYKVTA 136
>gi|325290741|ref|YP_004266922.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Syntrophobotulus glycolicus
DSM 8271]
gi|324966142|gb|ADY56921.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Syntrophobotulus glycolicus
DSM 8271]
Length = 182
Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats.
Identities = 65/181 (35%), Positives = 95/181 (52%), Gaps = 6/181 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ +LK + F D RG + Y S K LGL + ++ + IRGLHFQ P
Sbjct: 8 KISGCFLLKPKTFGDERGTLIKPYHSDSYKALGLHSEYNEE-LVVTSHKNVIRGLHFQNP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ Q K+V C+ GRI D+ VDIR+ SPTYG W + N +Y+P G AHG+
Sbjct: 67 PFPQIKVVSCVMGRILDVVVDIRKGSPTYGEWEGFILDNENNYSLYVPEGMAHGYAVYSE 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
NT V Y++++ + + DSG+ W S + W + P +S KD L ++ +S F Y
Sbjct: 127 NTIVCYRMSNVFMPQLDSGIKWD--SAGVLWDIES---PIISPKDSGLISFDKFESRFVY 181
Query: 182 D 182
Sbjct: 182 K 182
>gi|260061272|ref|YP_003194352.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Robiginitalea biformata
HTCC2501]
gi|88785404|gb|EAR16573.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Robiginitalea biformata
HTCC2501]
Length = 154
Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats.
Identities = 61/153 (39%), Positives = 101/153 (66%), Gaps = 3/153 (1%)
Query: 22 SQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIA 80
++Y+ ++ LGL FVQDNHS S +RGLH+Q+ +AQAKLVR + GR+ DI
Sbjct: 1 MESYNKAKFEKNLGLSVDFVQDNHSVSSR-NVLRGLHYQKGQWAQAKLVRVVRGRVRDIV 59
Query: 81 VDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSG 140
VD+R +SPT+G V++E+S++N ++IP G AHGF++LE +T YK +Y+ + ++G
Sbjct: 60 VDLRTDSPTFGRHVAVELSSDNSRMLWIPKGLAHGFLSLEDDTTFCYKCDAYYNPKAEAG 119
Query: 141 VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ + D +D+ W + ++ + +S +D+ LPF
Sbjct: 120 IRFNDPDLDLDWGVPESEI-KLSPRDRALPFFR 151
>gi|134097320|ref|YP_001102981.1| dTDP-4-deoxyglucose 3,5-epimerase [Saccharopolyspora erythraea NRRL
2338]
gi|133909943|emb|CAM00055.1| dTDP-4-deoxyglucose 3,5-epimerase [Saccharopolyspora erythraea NRRL
2338]
Length = 200
Score = 191 bits (487), Expect = 4e-47, Method: Composition-based stats.
Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 4/170 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + +D RG F + +G + Q NH S G +RGLHF
Sbjct: 6 LAVAGGFEFTPDPKQDRRGLFVSPLQDEAFVGAVGHRFPVAQMNHIVSAR-GVLRGLHFT 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P Q K V C GR D+ VDIR SPT+G W ++E+ + +Y P G AH F+ L
Sbjct: 65 TTPPGQCKYVYCARGRALDVIVDIRVGSPTFGKWDAVEMDTEHFRAVYFPRGTAHAFLAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
E +T + Y V+ Y E++ + D ++ + WP + +S++D
Sbjct: 125 EDDTLMSYLVSTPYVAEYEQAIDPFDPALGLPWPA--DLEVVLSDRDTVA 172
>gi|118469656|ref|YP_890202.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium smegmatis str.
MC2 155]
gi|118170943|gb|ABK71839.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium smegmatis str.
MC2 155]
Length = 184
Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 9/178 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL----GLQDVFVQDNHSFSFDCGTIRGLH 57
++ V +L F D RG F++T+ + + + G+ FVQD+ S S G +RG+H
Sbjct: 7 DLADVLVLVPEPFRDERGLFTRTFDAHIFDDHLGRPGVSASFVQDSQSRSSQ-GVVRGMH 65
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
+ +AKLVRC G + D+ VDIR +SPT+G + + + +Y+P GF HGF
Sbjct: 66 GRSE-RGEAKLVRCAHGAVHDVLVDIRPDSPTFGRQQAFLLDDKDFRHLYVPPGFLHGFQ 124
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
L +V Y++ + D VA+ D + I WPL T+ VS +D + +
Sbjct: 125 ALTAIADVCYRIDRPHDPSEDLAVAYNDPDLGIDWPLPVTM---VSPRDAGAGSWSDL 179
>gi|78486027|ref|YP_391952.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thiomicrospira crunogena
XCL-2]
gi|78364313|gb|ABB42278.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thiomicrospira crunogena
XCL-2]
Length = 175
Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats.
Identities = 64/170 (37%), Positives = 97/170 (57%), Gaps = 5/170 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V ++ + FED RG F +T+ ++ + GL+ F + +S S +RG+HFQ PP
Sbjct: 8 IDGVFEIENKVFEDFRGKFVKTFHEEVFRSHGLESNFKESFYSVSGK-NVLRGMHFQLPP 66
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ AKLV +G I D+AVDIR S T+G + + ++SA N +Y+ GFAHGF+TL
Sbjct: 67 HDHAKLVYVTSGEILDVAVDIREESSTFGKYFATKLSAKNAKSLYMDKGFAHGFLTLSDF 126
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
V Y T ++ E+D+G+ W S W P VSE+D+ L +L
Sbjct: 127 ASVTYLTTSVHASEYDTGIHWN--SFGFDW--EGVEKPIVSERDKALEYL 172
>gi|319950747|ref|ZP_08024641.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dietzia cinnamea P4]
gi|319435577|gb|EFV90803.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dietzia cinnamea P4]
Length = 219
Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats.
Identities = 55/182 (30%), Positives = 94/182 (51%), Gaps = 6/182 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ + R+ D RG F + ++ +E+ G + Q N S S + G +RGLH+
Sbjct: 6 LSVTGAWEITPRQISDDRGVFHEAFTDPAFREMTGHRFDLAQVNVSVSGE-GVLRGLHYA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C +G +FD+ VD+R SPT+G W + + + +YIP G AHGF+ L
Sbjct: 65 EVPPGQAKYVLCPSGTVFDVVVDVRVGSPTFGEWAGVLLDSVEQRAVYIPEGVAHGFLAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD----TILPSVSEKDQNLPFLNQI 175
E + V+Y ++ + + + D I I WP + I +S++D++ P L +
Sbjct: 125 EPQSTVMYFCSEGWRPGAEHVIDAFDPKIAIDWPQMALDGTAIEHVMSDRDRDAPSLLDV 184
Query: 176 DS 177
+
Sbjct: 185 AA 186
>gi|308445205|gb|ADO32779.1| dTDP-2,3,6-D-glycero-4-hexulose 5-epimerase [Streptomyces
vietnamensis]
Length = 203
Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 4/173 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ ++ ++ D RG F ++ + L+ + +G Q N+S S T+RG+H
Sbjct: 8 QVPGSYVITPHQWPDPRGTFFESLRTDLVGEAVGRPFEVRQINYSTS-RRNTLRGIHGVL 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P QAK V C+ G + D+ VD+R SPT+G S ++ NG+ +++ G HGF+ L
Sbjct: 67 IPPGQAKYVTCVRGALRDMVVDLRVGSPTFGQSASTLLTPENGMAVHVTEGLGHGFLALT 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+T + Y ++ + + D + + W + P +SEKD P L
Sbjct: 127 DDTCISYALSTAHVPGTQFEIDPLDPELALPWGHEEP--PLLSEKDARAPSLR 177
>gi|255013255|ref|ZP_05285381.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_1_7]
Length = 188
Score = 190 bits (484), Expect = 7e-47, Method: Composition-based stats.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 6/177 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+++ + D RG F + Y+ K+ G+ + ++ S G IR +HFQ
Sbjct: 10 LDMKGAYEITPFYATDERGGFIKDYNIDAFKQNGIDHELKEVFYTIS-KKGVIRAMHFQL 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
QAKLVRCI+G ++D+ +D+R +SPT+G W +++ N +YIP F HG++ LE
Sbjct: 69 V-KQQAKLVRCISGHVYDVIIDLRPDSPTFGKWQGFDLTGENQKALYIPQYFGHGYLVLE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP---LLDTILPSVSEKDQNLPFLNQ 174
+ V YK + + E D+G+ + D + I WP + +S+KD+NL L +
Sbjct: 128 D-SVVSYKCGEVFYGEGDAGIMYNDPDMAIEWPFGKIGGIEKLIISDKDKNLMSLKE 183
>gi|256840779|ref|ZP_05546287.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Parabacteroides sp. D13]
gi|298376604|ref|ZP_06986559.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_1_19]
gi|256738051|gb|EEU51377.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Parabacteroides sp. D13]
gi|298266482|gb|EFI08140.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 3_1_19]
Length = 189
Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 6/177 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+++ + D RG F + Y+ K+ G+ + ++ S G IR +HFQ
Sbjct: 10 LDMKGAYEITPFYATDERGGFIKDYNIDAFKQNGIDHELKEVFYTIS-KKGVIRAMHFQL 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
QAKLVRCI+G ++D+ +D+R +SPT+G W +++ N +YIP F HG++ LE
Sbjct: 69 V-KQQAKLVRCISGHVYDVIIDLRPDSPTFGKWQGFDLTGENQKALYIPQYFGHGYLVLE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP---LLDTILPSVSEKDQNLPFLNQ 174
+ V YK + + E D+G+ + D + I WP + +S+KD+NL L +
Sbjct: 128 D-SVVSYKCGEVFYGEGDAGIMYNDPDMAIEWPFDKIGGIEKLIISDKDKNLMSLKE 183
>gi|291009629|ref|ZP_06567602.1| dTDP-4-deoxyglucose 3,5-epimerase [Saccharopolyspora erythraea NRRL
2338]
gi|2599288|gb|AAB84077.1| EryBVII [Saccharopolyspora erythraea NRRL 2338]
gi|2665341|emb|CAA72086.1| putative TDP-4-keto-6-deoxyglucose 3,5 epimerase or 5-epimerase
[Saccharopolyspora erythraea NRRL 2338]
Length = 193
Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+D RG F + +G + Q NH S G +RGLHF P Q K
Sbjct: 7 FTPDPKQDRRGLFVSPLQDEAFVGAVGHRFPVAQMNHIVSAR-GVLRGLHFTTTPPGQCK 65
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
V C GR D+ VDIR SPT+G W ++E+ + +Y P G AH F+ LE +T + Y
Sbjct: 66 YVYCARGRALDVIVDIRVGSPTFGKWDAVEMDTEHFRAVYFPRGTAHAFLALEDDTLMSY 125
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
V+ Y E++ + D ++ + WP + +S++D
Sbjct: 126 LVSTPYVAEYEQAIDPFDPALGLPWPA--DLEVVLSDRDTVA 165
>gi|296137803|ref|YP_003645046.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Tsukamurella paurometabola
DSM 20162]
gi|296025937|gb|ADG76707.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Tsukamurella paurometabola
DSM 20162]
Length = 184
Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 58/178 (32%), Positives = 91/178 (51%), Gaps = 9/178 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL----GLQDVFVQDNHSFSFDCGTIRGLH 57
+++ V +L D RG F++T+ ++ G FVQD+ S S G +RGLH
Sbjct: 7 DLSDVVLLVPEPHRDQRGLFTRTFDAEEFDAHLGVPGASASFVQDSQSRS-HGGVVRGLH 65
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
+ +AKLVRC G + D+ VDIR +SPT+G S + N +Y+P GF HGF
Sbjct: 66 GRSG-RGEAKLVRCAHGAVLDVLVDIRPDSPTFGRHASFRLDDENFHHLYVPPGFLHGFQ 124
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
L +V Y++ + D GV + D + I+WPL T+ VS ++ +++
Sbjct: 125 ALTPVADVCYRIDRPHDPNEDLGVVYNDPDLAISWPLPVTV---VSSREAAAGSWSEL 179
>gi|271962221|ref|YP_003336417.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptosporangium roseum DSM
43021]
gi|270505396|gb|ACZ83674.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptosporangium roseum DSM
43021]
Length = 187
Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 6/169 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
I+ V + D RG F++T+ + + GL FVQD+ S S GT+RG+H +
Sbjct: 7 KIDGVLLFVPTPHRDDRGLFTRTFDKAVAEGAGLDFSAFVQDSQSRSRQ-GTVRGMHGRS 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AKLVRC G + D+ VD R SPT+G S+ + + +Y+P G HGF L
Sbjct: 66 G-RGEAKLVRCARGAVHDVLVDARPGSPTFGEQTSVLLDDETFVTLYVPPGLLHGFQALT 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
T+V Y++ + D V + D + I WPL + +S +D +
Sbjct: 125 GQTDVCYRIDREHDPAEDLSVRYDDPDLRIDWPLPVSA---ISGRDLSA 170
>gi|291541987|emb|CBL15097.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ruminococcus bromii L2-63]
Length = 190
Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 59/181 (32%), Positives = 98/181 (54%), Gaps = 6/181 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ ++K D RG F + YS ++ + GL+ + ++ S G IR LHFQR
Sbjct: 11 DFEGAYLIKPFCATDIRGAFIKDYSKEVFEANGLEHNLAEVFYTVS-HKGVIRALHFQRV 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ QAKLVRCI G++FD+ VD+R SPT+ W +S N ++Y+P FAHG++ LE
Sbjct: 70 -HEQAKLVRCIKGKVFDVIVDLRPESPTFKKWQGFYLSEENMNELYVPEHFAHGYLVLEP 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD---TILPSVSEKDQNLPFLNQIDSP 178
+ V YK + + E+D G+ + D + + WP + +++KD+NL + +
Sbjct: 129 -SVVSYKCGEKFYGEYDDGIMYNDPDLGVEWPFDEIGGIENLIIADKDKNLQTFKEYEDK 187
Query: 179 F 179
+
Sbjct: 188 Y 188
>gi|284992554|ref|YP_003411108.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geodermatophilus obscurus DSM
43160]
gi|284065799|gb|ADB76737.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geodermatophilus obscurus DSM
43160]
Length = 198
Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 4/178 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + +L D+RG F++ Y + +L + G Q NHS S G +RG+HF
Sbjct: 4 LAVGDAYVLDLVPHGDARGRFTEWYRADVLAGVVGHGLPLAQANHSVSAR-GVLRGVHFA 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C AGR+ D+ VD+R SPT+G ++ + + +Y+ G H F++L
Sbjct: 63 LVPPGQAKYVYCPAGRVLDVVVDVRVGSPTFGVHDAVVLDSEQPRAVYLAEGLGHAFLSL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ V Y V+ Y + GV+ D ++D+ WP D + +S KDQ P L + +
Sbjct: 123 ADGSSVTYLVSSGYDPAREFGVSPVDPALDLPWP--DDVEFELSAKDQQAPTLAEARA 178
>gi|5902168|gb|AAD55452.1| dTDP-4-keto-6-deoxyglucose 3,5-epimerase [Streptomyces
antibioticus]
Length = 204
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 2/162 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
++++ + D RG F + + + +E +G Q N S S
Sbjct: 4 LDVDGAWLYTPEIMRDERGEFLEWFRGRTFQEKIGHPLSLAQANCSVSRKAFCAASTS-P 62
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
PP QAK V C +G + D+ VD+RR SPT+G W ++ + A +Y+ G H FM L
Sbjct: 63 TPPPGQAKYVTCASGTVLDVVVDVRRGSPTFGRWAAVRLDAARHQGLYLAEGLGHAFMAL 122
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS 161
+ V+Y + Y E + V D +I I WP I+P
Sbjct: 123 TDDATVVYLCSQPYVAEAERAVDPLDPAIGIEWPTDIDIVPV 164
>gi|227121334|gb|ACP19366.1| SaqZ1 [Micromonospora sp. Tu 6368]
Length = 199
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V ++ +F D RG F +++ +E G+ V Q N+S S T+RG+H
Sbjct: 8 LPGVFRMEVNQFRDVRGSFFESFRVDAFEEATGVPFVPRQINYSVS-RRNTLRGIHSVAL 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P QAK V C+ G + D AVD+R SPT+G + S + A +G +Y+P G HGF+ L+
Sbjct: 67 PPGQAKFVSCVRGALRDFAVDLRVGSPTFGQYESNLLEAGSGRCVYLPEGVGHGFLALQD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
++ + Y ++ + V D + I W + P +S+ D + L
Sbjct: 127 DSSICYVLSTTFVPGTQINVDPLDPELAIPWGFEEP--PLMSDADLSAMSLADA 178
>gi|283458590|ref|YP_003363223.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rothia mucilaginosa DY-18]
gi|283134638|dbj|BAI65403.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rothia mucilaginosa DY-18]
Length = 474
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 62/179 (34%), Positives = 94/179 (52%), Gaps = 12/179 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQR 60
I + I+ D+RGWF + + + + GL D VQ+N SF+ GT RG+H
Sbjct: 11 EIPGLLIIDLPVHGDNRGWFKENWQREKMLAAGLPDFNPVQNNISFNASVGTTRGIH--A 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K V GRIF VD+R ++G V++E+ + I++P G + F TLE
Sbjct: 69 EPWD--KYVSVATGRIFGAWVDLRAG-ESFGKVVTVELGPDT--AIFVPRGVGNSFQTLE 123
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQ---DKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
NT Y V D +S + SG ++ D+++ I WP+ D +SEKD+N P LN+I
Sbjct: 124 ENTAYTYLVNDHWSADAVSGYSFLNLADETVAIDWPI-DLAKAELSEKDRNHPRLNEIK 181
>gi|255327299|ref|ZP_05368373.1| dTDP-4-dehydrorhamnose reductase [Rothia mucilaginosa ATCC 25296]
gi|255295579|gb|EET74922.1| dTDP-4-dehydrorhamnose reductase [Rothia mucilaginosa ATCC 25296]
Length = 471
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 62/179 (34%), Positives = 94/179 (52%), Gaps = 12/179 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQR 60
I + I+ D+RGWF + + + + GL D VQ+N SF+ GT RG+H
Sbjct: 11 EIPGLLIIDLPVHGDNRGWFKENWQREKMVAAGLPDFNPVQNNISFNASVGTTRGIH--A 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K V GRIF VD+R ++G V++E+ + I++P G + F TLE
Sbjct: 69 EPWD--KYVSVATGRIFGAWVDLRAG-ESFGKVVTVELGPDT--AIFVPRGVGNSFQTLE 123
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQ---DKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
NT Y V D +S + SG ++ D+++ I WP+ D +SEKD+N P LN+I
Sbjct: 124 ENTAYTYLVNDHWSADAVSGYSFLNLADETVAIDWPI-DLAKAELSEKDRNHPRLNEIK 181
>gi|297526887|ref|YP_003668911.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Staphylothermus hellenicus
DSM 12710]
gi|297255803|gb|ADI32012.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Staphylothermus hellenicus
DSM 12710]
Length = 141
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 64/138 (46%), Positives = 87/138 (63%), Gaps = 4/138 (2%)
Query: 45 SFSFDCG-TIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNG 103
S S G +R L++Q P Q +L+ + GRI D+AVDIRR SP YG +V+ E+S +N
Sbjct: 5 SLSKPRGDIVRDLYYQLEPMEQGRLITVLRGRILDVAVDIRRGSPWYGKYVAAELSGDNH 64
Query: 104 LQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVS 163
L ++IP GFAHGF LE +T V+Y VT YS EH+ + W D I I WP+ I VS
Sbjct: 65 LLLWIPPGFAHGFQALEDDTIVLYLVTKEYSPEHERCIRWDDPEISIDWPVKPAI---VS 121
Query: 164 EKDQNLPFLNQIDSPFEY 181
EKD+ P L+Q ++ F+Y
Sbjct: 122 EKDKKCPPLSQAETNFKY 139
>gi|166363833|ref|YP_001656106.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Microcystis aeruginosa
NIES-843]
gi|166086206|dbj|BAG00914.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Microcystis aeruginosa
NIES-843]
Length = 180
Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats.
Identities = 68/186 (36%), Positives = 97/186 (52%), Gaps = 11/186 (5%)
Query: 1 MNINPVRI-----LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M I RI + ED RG F +T + K L F ++ +S S +RG
Sbjct: 1 MKITETRIPKCYEIVPTILEDKRGRFVKTLHQDIYKSHQLIINFAEEYYSVS-KKNVLRG 59
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LHFQ PP K+V C+ G + D+ VD+R+ SPTYG + +S+ NG IYIP+G AHG
Sbjct: 60 LHFQVPPQDCTKIVYCLEGSVMDVVVDLRKGSPTYGEFELFNLSSENGKIIYIPSGLAHG 119
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F + YKV+ YS + D+G+ W S+ I WP + P +SE+DQ+ ++
Sbjct: 120 FYVTSETAIMCYKVSTVYSPKEDTGILWN--SVVIPWP---NLHPILSERDQSFLPFSEF 174
Query: 176 DSPFEY 181
SP Y
Sbjct: 175 RSPLVY 180
>gi|317124308|ref|YP_004098420.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Intrasporangium calvum DSM
43043]
gi|315588396|gb|ADU47693.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Intrasporangium calvum DSM
43043]
Length = 199
Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 5/167 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + R+F D RG F++ + + L E G + Q N S S G +RG+HF
Sbjct: 6 LTIAGAFEVTPRQFHDDRGTFAEGFRADRLAEALGHEMRVRQTNISVS-QAGALRGIHFA 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P +QAK V +G D +DIR SPT+G W S+ + A + +Y+ G H L
Sbjct: 65 ALPPSQAKFVTVTSGVFLDFVIDIRVGSPTFGQWDSVRLDAVDRRAVYVAEGLGHALACL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
E V Y ++ ++ + GV D ++ + L + +P VS+KD
Sbjct: 125 EDGVAV-YLCSEVFNPAAERGVNPLDPAVGLA--LPEGFVPVVSDKD 168
>gi|317063604|ref|ZP_07928089.1| CDP-3,6-dideoxy-D-glycero-D-glycero-4-hexulose-5-epimerase
[Fusobacterium ulcerans ATCC 49185]
gi|313689280|gb|EFS26115.1| CDP-3,6-dideoxy-D-glycero-D-glycero-4-hexulose-5-epimerase
[Fusobacterium ulcerans ATCC 49185]
Length = 183
Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats.
Identities = 67/174 (38%), Positives = 96/174 (55%), Gaps = 6/174 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I+K + F+D RG F +TY+ ++ L F + S S IRG+HFQ P
Sbjct: 10 ELEGVFIIKNKIFQDERGIFIKTYNKDEFEKNNLYTEFRESYFSISNK-DVIRGMHFQLP 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ KLV G++ D+ VD+R+NS T G ++SLE+S NG +YIP G AHGF +LE
Sbjct: 69 PFEHEKLVYVAKGKVLDVIVDLRKNSKTLGKYISLELSEENGYSVYIPKGLAHGFKSLED 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ +IY V Y+ E D G+ W SI W T P +S +D+N +N
Sbjct: 129 GSIMIYNVATVYNSESDYGIRWN--SIGFDW---RTEEPILSVRDKNFESMNDF 177
>gi|301309860|ref|ZP_07215799.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 20_3]
gi|300831434|gb|EFK62065.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 20_3]
Length = 189
Score = 187 bits (477), Expect = 5e-46, Method: Composition-based stats.
Identities = 55/177 (31%), Positives = 94/177 (53%), Gaps = 6/177 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+++ + D RG F + Y+ K+ G+ + ++ S G IR +HFQ
Sbjct: 10 LDMKGAYEITPFYATDERGGFIKDYNIDAFKQNGIDHELKEVFYTIS-KKGVIRAMHFQL 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
QAKLVRCI+G ++D+ +D+R +SPT+G W +++ N +YIP F HG++ LE
Sbjct: 69 V-KQQAKLVRCISGHVYDVIIDLRPDSPTFGKWQGFDLTGENQKALYIPQYFGHGYLVLE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP---LLDTILPSVSEKDQNLPFLNQ 174
+ V YK + + E D+G+ + D + I WP + +S+KD+NL + +
Sbjct: 128 D-SVVSYKCGEVFYGEGDAGIMYNDPDMAIEWPFDKIGGIEKLIISDKDKNLMSMKE 183
>gi|315937040|gb|ADU56049.1| hypothetical protein CA37-26 [uncultured organism CA37]
Length = 203
Score = 187 bits (477), Expect = 6e-46, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 3/174 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFD-CGTIRGLHFQRP 61
++ + DSRG F+ Y E + +F + S + G +RG+H+
Sbjct: 11 VDGAFQFTPAVYADSRGLFASPYQDPAFAEALDRPLFPVRDVSHNRSARGVLRGIHYTAT 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P +AK V C G++ D VD+R SPT+G W ++S +N +YIP G H F++L
Sbjct: 71 PPGRAKYVYCPYGQVQDYLVDLRIGSPTFGRWEMTDLSGDNCRALYIPVGVGHAFLSLRD 130
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
++ V+Y +++ Y ++ ++ D I + P+ + S++D P L +
Sbjct: 131 DSVVVYVMSEGYVSANELAISPFDPEIGL--PIPPGLAIQQSDRDAAAPTLAEA 182
>gi|229815501|ref|ZP_04445831.1| hypothetical protein COLINT_02551 [Collinsella intestinalis DSM
13280]
gi|229808921|gb|EEP44693.1| hypothetical protein COLINT_02551 [Collinsella intestinalis DSM
13280]
Length = 215
Score = 187 bits (477), Expect = 6e-46, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 82/178 (46%), Gaps = 12/178 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQR 60
NI + + DSRGWF + + + ++ LGL D VQ+N SF+ G RG+H
Sbjct: 25 NIPGMLVFDLPVHGDSRGWFKENWQREKMRALGLPDMGPVQNNISFNDRKGVTRGIH--A 82
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + GR+F VD+R S ++G + E+ + IY+P G + + LE
Sbjct: 83 EPWD--KFISVACGRVFGAWVDLRPGS-SFGQVYTCELDPS--RAIYVPRGVGNSYQALE 137
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T Y V +S E S V D + I WP+ + +SE D+ P L
Sbjct: 138 DGTAYTYLVNAHWSAELKSTYTFVNLADPDLGIEWPIPLSEC-ELSEADKAHPALADA 194
>gi|4240427|gb|AAD13558.1| NDP-hexose 3,5-epimerase homolog [Streptomyces cyanogenus]
Length = 192
Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats.
Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 5/174 (2%)
Query: 2 NINPVRILKT-RKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ V +L +D RG F ++ + LL+++ G Q N+S S +RG+H
Sbjct: 7 KVPGVHVLAPWTGSKDERGAFFESLRTDLLQDVVGHPFEVKQINYSVS-RRNHLRGIHSV 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G D VD+R SPT+G + + A +G +YIP G HGF+TL
Sbjct: 66 TSPPGQAKYVSCVRGAFRDFVVDLRVGSPTFGQYDVNLLDAASGRALYIPEGVGHGFLTL 125
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ + Y ++ Y + D + + W + P +SEKD+ L
Sbjct: 126 TEDACICYVLSSTYVPGTQIDIDPLDPDLALPWGFTEP--PLISEKDRTARSLA 177
>gi|257469358|ref|ZP_05633452.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium ulcerans ATCC
49185]
Length = 180
Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats.
Identities = 67/174 (38%), Positives = 96/174 (55%), Gaps = 6/174 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I+K + F+D RG F +TY+ ++ L F + S S IRG+HFQ P
Sbjct: 7 ELEGVFIIKNKIFQDERGIFIKTYNKDEFEKNNLYTEFRESYFSISNK-DVIRGMHFQLP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ KLV G++ D+ VD+R+NS T G ++SLE+S NG +YIP G AHGF +LE
Sbjct: 66 PFEHEKLVYVAKGKVLDVIVDLRKNSKTLGKYISLELSEENGYSVYIPKGLAHGFKSLED 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+ +IY V Y+ E D G+ W SI W T P +S +D+N +N
Sbjct: 126 GSIMIYNVATVYNSESDYGIRWN--SIGFDW---RTEEPILSVRDKNFESMNDF 174
>gi|91778373|ref|YP_553581.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia xenovorans
LB400]
gi|91691033|gb|ABE34231.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia xenovorans
LB400]
Length = 182
Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats.
Identities = 58/175 (33%), Positives = 94/175 (53%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++++ R D+ G ++ + +E + FVQ+ H+ + + GLH+Q
Sbjct: 10 IRDVKLIEPRIVSDTHGVSFDSFDQEDFEEHVARGYRFVQERHAV-YPYNVLCGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G + ++AVD+RR SPT+G ++S +SA N Q+++P GFAHGF+ L
Sbjct: 69 -RPQGKLVRVVNGEVVNVAVDLRRWSPTFGRYISTRLSAANCRQLWVPPGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EV+ K T+ EH+ + W D I I W L P +SE+D + +
Sbjct: 128 VAEVLCKTTERGLAEHERTLQWDDPDIAIEWDL--NTAPIISERDSLGTRFSMAE 180
>gi|294673197|ref|YP_003573813.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella ruminicola 23]
gi|294473828|gb|ADE83217.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella ruminicola 23]
Length = 189
Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 6/180 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+++ ++ D RG F + Y+ + K G++ + ++ S G IR +HFQ
Sbjct: 10 LDLKGAYKIQPFYATDERGGFVKDYNIDMFKANGIEHELKEVFYTIS-KRGVIRAMHFQL 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
QAKLVRC++G ++D+ D+R +SPT+G W ++ +N +++YIP F HG++ +E
Sbjct: 69 V-KQQAKLVRCVSGHVYDVIADLRPDSPTFGQWRGFHLTGDNQVELYIPQYFGHGYLVIE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP---LLDTILPSVSEKDQNLPFLNQIDS 177
+ V YK + + E DSG+ + D + I WP + +SEKD+NL ++
Sbjct: 128 D-SVVSYKCGEVFYGEGDSGIMYNDPDLAIEWPMDLIGGEEKLIISEKDKNLMSFKDYNN 186
>gi|32492535|gb|AAP85353.1| putative 3-5-epimerase [Streptomyces griseoruber]
Length = 226
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 5/169 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHF 58
+ + V F D RG F + ++F Q + S S G +RG+H+
Sbjct: 6 LKVAGVLEFSPPVFRDPRGLFVSPFQRDAFVAATGHELFGVAQTSFSVS-RRGAVRGIHY 64
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
R P AK V C GR D+ VD+R SPT+G W S+ + ++ +Y+P G H F
Sbjct: 65 TRVPPGTAKYVHCPRGRALDMVVDLRLGSPTFGAWDSVVLDQDDCRALYLPVGVGHAFAA 124
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQ 167
L +T + Y ++ Y+ E++ V+ D + + PL + P +SE+D+
Sbjct: 125 LTDDTLMAYTLSTAYAPENELAVSVHDPRLRL--PLPRDVPPLLSERDR 171
>gi|302387804|ref|YP_003823626.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Clostridium
saccharolyticum WM1]
gi|302198432|gb|ADL06003.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Clostridium
saccharolyticum WM1]
Length = 187
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 58/180 (32%), Positives = 98/180 (54%), Gaps = 5/180 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ + I++ ++D RG +T+ + E GL+ F + + + IRG H+QRP
Sbjct: 9 QISGLFIVRPHYYQDDRGSNMKTFHKETFLEKGLKCDFGETMITTNLHKNVIRGFHYQRP 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY Q KL C+ G + +VD+R+ SPTYG + + ++ +YIP G A+ +
Sbjct: 69 PYTQCKLYYCLCGEWNNYSVDLRKGSPTYGKVICISMNEEERKLLYIPEGIANAHLIKRD 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
NT+V+Y++ Y +HD GV W S+ I + + + P +++KD LP + +SPF Y
Sbjct: 129 NTKVLYQLGSKYMPDHDEGVRWN--SLGINFSVTN---PIITDKDAGLPSFEEFESPFIY 183
>gi|210633568|ref|ZP_03297812.1| hypothetical protein COLSTE_01729 [Collinsella stercoris DSM 13279]
gi|210159103|gb|EEA90074.1| hypothetical protein COLSTE_01729 [Collinsella stercoris DSM 13279]
Length = 237
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 11/178 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQR 60
I ++++ DSRGWF + + + LG+ D VQ+N S++ G RG+H
Sbjct: 16 GIGGLKVVDLAVHGDSRGWFKENWQRAKMCALGVPDFRIVQNNISYNDRKGVTRGIH--A 73
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + G +F VD+R S TYG + + + IY+P G + F LE
Sbjct: 74 EPWD--KFISVARGSVFGAWVDLREGSATYGKVYTTVLDPS--KAIYVPRGVGNSFQALE 129
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T Y V +S E V D ++ I WP+ +VSE D N P L +
Sbjct: 130 DGTAYTYLVNAHWSAELKGTYTFVNLADPALGIEWPIPLG-EATVSEADLNHPMLADV 186
>gi|218960960|ref|YP_001740735.1| putative dTDP-6-deoxy-D-glucose-3,5-epimerase [Candidatus
Cloacamonas acidaminovorans]
gi|167729617|emb|CAO80529.1| putative dTDP-6-deoxy-D-glucose-3,5-epimerase [Candidatus
Cloacamonas acidaminovorans]
Length = 207
Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 3/176 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V I+ D RG+F + + +L L + +++ S+S T+RGLHFQ
Sbjct: 27 SLEGVLIIHLDPKIDKRGYFLRFWDETILSAYNLPQRWCEESISYSKYKNTLRGLHFQYQ 86
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+AQ+K + I G I D+ V+I +SP YG W E+S L ++IP +AHGF+T
Sbjct: 87 PFAQSKFISLIKGYISDVVVNIDLDSPNYGKWQLFELSDKEPLALFIPANYAHGFVTRTE 146
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ +IYK+ Y+ + G+ W DK + I W + P +S++D LN+I +
Sbjct: 147 DCYLIYKMDKPYNPLFEDGIIWNDKDLGINWKVS---APILSQRDSGFKTLNEITT 199
>gi|237718657|ref|ZP_04549138.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_2_4]
gi|229452117|gb|EEO57908.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bacteroides sp. 2_2_4]
Length = 189
Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 57/177 (32%), Positives = 96/177 (54%), Gaps = 6/177 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + + D RG F + Y+ + K G++ + ++ S G IR +HFQ
Sbjct: 10 LEMKGAFEITPFYATDERGGFVKDYNIDMFKANGIEHELKEVFYTIS-KKGVIRAMHFQL 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
QAKLVRCI+G ++D+ +D+R +SPT+G W +++ +N +YIP F HG++ LE
Sbjct: 69 V-KQQAKLVRCISGHVYDVIIDLRPDSPTFGKWQGFDLTGDNQKTLYIPQFFGHGYLVLE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP---LLDTILPSVSEKDQNLPFLNQ 174
+ V YK + + E D+G+++ D + I WP + +SEKD+NL L +
Sbjct: 128 D-SVVSYKCGEVFYGEGDAGISYNDPDMGIVWPFDKIGGIENMIISEKDKNLMSLKE 183
>gi|170785369|gb|ACB37728.1| bifunctional NDP-hexose 3,5- (or 5-) epimerase/putative
dTDP-4-keto-6-deoxyglucose-2,3-dehydratase
[Micromonospora chalcea]
Length = 200
Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 4/166 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I + + D RG F + + S+LL+++G + Q N+S S T+RG+H
Sbjct: 10 SIPGAYRITVTQHSDRRGSFFEAWRFSELLQQVGQRFEIRQVNYSVS-RKNTLRGIHGTT 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q+KLV C+ G D+AVD+R SPT+G + A +G+ +Y+ G H F+ L
Sbjct: 69 LPPGQSKLVTCVRGAAMDVAVDLRVGSPTFGKFDVTFQDATSGIGVYLTEGIGHAFLALT 128
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+T + Y Y VA D ++ I W L P +S+KD
Sbjct: 129 DDTCMSYLCGAEYVPGTMIDVAALDPALGIPWKLDGP--PVMSDKD 172
>gi|83272138|gb|ABC00735.1| CosL [Streptomyces olindensis]
Length = 208
Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 5/168 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHF 58
+ + R+F D RG F + + ++ + F Q NHS S GT+RG+HF
Sbjct: 6 LKVEGAYEFTPRQFRDHRGLFVSPFQLEAFQQALGRPHFPVAQTNHSIS-RRGTVRGIHF 64
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
P AK V C GR DI VD+R SPT+ W ++E+ + Y P G H F+
Sbjct: 65 TVTPPGTAKYVYCARGRALDIVVDLRVGSPTFMQWDAVEMDQVHFRASYFPVGVGHAFVA 124
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
LE +T + Y +T Y E++ V D+ + + P + SE+D
Sbjct: 125 LEDDTVMSYLLTGPYVAENELAVDIFDRELGVRLPA--GLDTVQSERD 170
>gi|53794562|gb|AAU93789.1| dTDP-4-keto-6-deoxyglucose 3,5-epimerase [Aeromicrobium erythreum]
Length = 197
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 80/178 (44%), Gaps = 5/178 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + D+RG F+ + +G Q NH S G +RG+HF
Sbjct: 6 LRVAGGWEFTPTVHHDARGVFASPLQEEAFVAAVGHPFPVAQTNHIVSDR-GVLRGVHFT 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P Q+K V C AGR D+ +D+R +SPT+G W ++E+ +Y P G AH FM L
Sbjct: 65 ASP-GQSKYVHCAAGRALDVMIDVRTDSPTFGTWEAVELDPRRCNALYFPIGTAHAFMAL 123
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
E T + Y V+ Y E + + D + + WP L +S +D+ Q +
Sbjct: 124 EPGTIMSYLVSTPYDAELELAIDPFDPELALPWPADVPAL--LSGRDEVAMSFAQARA 179
>gi|296159913|ref|ZP_06842734.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. Ch1-1]
gi|295889896|gb|EFG69693.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia sp. Ch1-1]
Length = 198
Score = 184 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 58/175 (33%), Positives = 93/175 (53%), Gaps = 5/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
I V++++ R D+ G ++ + +E + FVQ+ H+ + + GLH+Q
Sbjct: 10 IRDVKLIEPRIVSDTHGVSFDSFDQEDFEEHVARGYRFVQERHAV-YPHNVLCGLHYQIQ 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVR + G + ++AVD+RR SPT+G ++S +SA N Q+++P GFAHGF+ L
Sbjct: 69 -RPQGKLVRVVNGEVANVAVDLRRWSPTFGRYISTRLSAANCRQLWVPPGFAHGFLVLSD 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EV+ K T+ EH+ + W D I I W L P SE+D + +
Sbjct: 128 VAEVLCKTTERGLTEHERTLQWDDPDIAIEWDL--NTAPITSERDSVGTRFSMAE 180
>gi|210633778|ref|ZP_03297849.1| hypothetical protein COLSTE_01766 [Collinsella stercoris DSM 13279]
gi|210159077|gb|EEA90048.1| hypothetical protein COLSTE_01766 [Collinsella stercoris DSM 13279]
Length = 237
Score = 184 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 11/178 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQR 60
I ++++ DSRGWF + + + LG+ D VQ+N S++ G RG+H
Sbjct: 16 GIGGLKVVDLAVHGDSRGWFKENWQRAKMTALGIPDLRVVQNNISYNDSRGVTRGIH--A 73
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + G +F VD+R S T+G + + + IY+P G + F LE
Sbjct: 74 EPWD--KFISVARGSVFGAWVDLREGSETFGKVFTTVLDPS--KAIYVPRGVGNSFQALE 129
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T Y V +S+E V D + I WP+ +VS+ D N P L +
Sbjct: 130 DGTAYTYLVDAHWSLELKRTYTFVNLADPELAIEWPIPLD-EATVSDADLNHPMLKDV 186
>gi|139439925|ref|ZP_01773277.1| Hypothetical protein COLAER_02315 [Collinsella aerofaciens ATCC
25986]
gi|133774775|gb|EBA38595.1| Hypothetical protein COLAER_02315 [Collinsella aerofaciens ATCC
25986]
Length = 484
Score = 184 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 11/178 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQR 60
I ++++ DSRGWF + + + LG+ D VQ+N S++ G RG+H
Sbjct: 16 GIVGLKVVDLAVHGDSRGWFKENWQRAKMTALGIPDLRVVQNNVSYNDSRGVTRGIH--A 73
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + G +F VD+R S T+G + + + IY+P G + F LE
Sbjct: 74 EPWD--KFISVARGSVFGAWVDLREGSETFGKVFTTVLDPS--KAIYVPRGVGNSFQALE 129
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T Y V +S+E V D ++I WP+ +VSE D N P L +
Sbjct: 130 DGTAYTYLVDAHWSLELKRTYTFVNLADPELNIQWPIPLD-QATVSEADLNHPMLRDV 186
>gi|300743861|ref|ZP_07072881.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Rothia
dentocariosa M567]
gi|300380222|gb|EFJ76785.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Rothia
dentocariosa M567]
Length = 478
Score = 184 bits (469), Expect = 5e-45, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 95/178 (53%), Gaps = 12/178 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQR 60
+I + ++ D+RGWF + + + ++ GL D VQ+N SF+ GT RG+H
Sbjct: 11 DIPGLLVIDLPVHGDNRGWFKENWQREKMRAAGLPDFDPVQNNISFNTSVGTTRGIH--A 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K V +GRIF VD+R ++G V++E+ + I++P G + F TL+
Sbjct: 69 EPWD--KYVSVASGRIFGAWVDLRAG-ESFGRVVTVELGPDT--AIFVPRGVGNAFQTLQ 123
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQ---DKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
NT Y V D +S + + ++ D+S+ I WP+ D +SEKD+ P L++I
Sbjct: 124 ENTAYTYLVNDHWSADALTAYSFLNLADESVAIDWPI-DLAQAELSEKDRKHPRLHEI 180
>gi|260836799|ref|XP_002613393.1| hypothetical protein BRAFLDRAFT_68401 [Branchiostoma floridae]
gi|229298778|gb|EEN69402.1| hypothetical protein BRAFLDRAFT_68401 [Branchiostoma floridae]
Length = 493
Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 6/176 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + +L+ + D RG + Y+ G+ + Q S S+ +RGLH
Sbjct: 9 LAVRDAYLLEFARHSDRRGHLEELYNETRYPS-GVTQHWAQVTCSTSYR-NVLRGLHCST 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
KLV C+AGRI+D+ VD+R+ SPTY W + +S NN Q+YIP HGF TL
Sbjct: 67 ----YGKLVTCVAGRIYDVVVDLRKTSPTYLRWSAAILSDNNRRQMYIPPNCGHGFYTLG 122
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
V+Y Y + + W D +++ WPL + P +S+KD++ P L++ +
Sbjct: 123 DRNTVVYCQGGVYQPATERDLLWFDPFVNVYWPLETSQPPVLSDKDRSAPCLDENE 178
>gi|311113106|ref|YP_003984328.1| dTDP-4-dehydrorhamnose reductase [Rothia dentocariosa ATCC 17931]
gi|310944600|gb|ADP40894.1| dTDP-4-dehydrorhamnose reductase [Rothia dentocariosa ATCC 17931]
Length = 478
Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats.
Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 12/178 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQR 60
+I + ++ D+RGWF + + + ++ GL D VQ+N SF+ GT RG+H
Sbjct: 11 DIPGLLVIDLPVHGDNRGWFKENWQREKMRAAGLPDFDPVQNNISFNTSVGTTRGIH--A 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K V +GRIF VD+R ++G V++E+ + I++P G + F TLE
Sbjct: 69 EPWD--KYVSVASGRIFGAWVDLRAG-ESFGRVVTVELGPDT--AIFVPRGVGNAFQTLE 123
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQ---DKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
NT Y V D +S + + ++ D+S I WP+ D +SEKD+ P L++I
Sbjct: 124 ENTAYTYLVNDHWSADALTAYSFLNLADESTAIDWPI-DLAQAELSEKDRKHPRLHEI 180
>gi|315445634|ref|YP_004078513.1| dTDP-4-dehydrorhamnose reductase [Mycobacterium sp. Spyr1]
gi|315263937|gb|ADU00679.1| dTDP-4-dehydrorhamnose reductase [Mycobacterium sp. Spyr1]
Length = 451
Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats.
Identities = 61/176 (34%), Positives = 89/176 (50%), Gaps = 10/176 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I + +++ D+RGWF + + + + GL D VQ+N SF+ GT RG H
Sbjct: 19 IPGLLVVELPVHGDNRGWFKENWQREKMVTAGLPDFGPVQNNISFNDAIGTTRGFH--AE 76
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ KLV AGRIF VD+R S TYG + E+ A+ +++P G + F TLE
Sbjct: 77 PWD--KLVSVAAGRIFGAWVDLRSGS-TYGTSFTAELDAS--RAVFVPRGVGNAFQTLES 131
Query: 122 NTEVIYKVTDFYSVEHDS-GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
NT Y V D YS + V D + I WP+ +S KD+ P L+++D
Sbjct: 132 NTAYTYLVNDHYSPDAAYVSVNLADPQVGIEWPIP-LARAELSGKDRANPRLSEVD 186
>gi|171466624|gb|ACB46499.1| sugar 5-epimerase [Actinomadura kijaniata]
Length = 202
Score = 183 bits (466), Expect = 9e-45, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 4/167 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
M++ ++ + D RG F +++ S+LL++ G Q N+S S T+RG+H
Sbjct: 9 MSVAGAFRIRPTQIPDRRGRFYESWRFSELLQQAGHPFEIRQVNYSVS-RKNTLRGIHGT 67
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P Q KLV C+ G D+AVD+R SPT+G + A +G+ +Y+ G H F+ L
Sbjct: 68 TIPPGQTKLVTCVRGAALDVAVDLRVGSPTFGRFDVTLQEAGSGIGVYLADGIGHAFLAL 127
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+T + Y Y V D ++ I W L P +S+KD
Sbjct: 128 TDDTCMNYLCGAEYVPGTMIDVQALDPALGIPWELDGP--PIMSDKD 172
>gi|111022708|ref|YP_705680.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus jostii RHA1]
gi|110822238|gb|ABG97522.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus jostii RHA1]
Length = 184
Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 59/173 (34%), Positives = 91/173 (52%), Gaps = 10/173 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-----GLQDVFVQDNHSFSFDCGTIRGL 56
+ VR+ + + D RG F++T+ + E L F+QD+ S S+ G +RG+
Sbjct: 7 ELTDVRVFRPVPYRDDRGLFTRTFEAGQFDEHMSETGILAADFLQDSQSRSWR-GVVRGM 65
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H + P +AKLVRC G I+D+ VDIRR SPT+G + + + +Y+P GF HGF
Sbjct: 66 HGRANP-GEAKLVRCAHGAIYDVLVDIRRGSPTFGQKEAFRLDDVDFAHLYVPPGFLHGF 124
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
L +V Y++ + D VA D S+ ITWPL + +S++D
Sbjct: 125 QALTEVADVCYRIDREHDPTADIAVAHDDPSLAITWPLP---VSLISDRDAAA 174
>gi|237748304|ref|ZP_04578784.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oxalobacter formigenes
OXCC13]
gi|229379666|gb|EEO29757.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oxalobacter formigenes
OXCC13]
Length = 182
Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 2/173 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+I+ F DS G+ + ++ + + V D + GLH+Q PP
Sbjct: 8 IREVKIVNPDVFHDSNGFLIEDFNLETFGKALDHAVEFVDERLIHSGRHELMGLHYQLPP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+AQ KLV G+ F +AVD+R++SP +G W+ +S N ++ ++P GF HGF+TL
Sbjct: 68 HAQEKLVHVTNGQTFQVAVDLRKSSPDFGKWIGTVVSDENRIRFWVPEGFGHGFVTLSDF 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
++ VT + E + + W D +++I W I P VS KD L +
Sbjct: 128 ADIAIGVTKAFDKESERCIRWDDPALEIDW--HGIIAPRVSLKDLEGKLLYEA 178
>gi|238062701|ref|ZP_04607410.1| 3,5-epimerase [Micromonospora sp. ATCC 39149]
gi|237884512|gb|EEP73340.1| 3,5-epimerase [Micromonospora sp. ATCC 39149]
Length = 200
Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 5/177 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV--QDNHSFSFDCGTIRGLHF 58
+ + + D RG F Y L ++ +F Q ++S S GT+RGLHF
Sbjct: 6 LTVEGAYAFAPTVYPDYRGVFLSPYLDSLFRDTVGYPLFPVRQTSYSVS-RRGTLRGLHF 64
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
R P AK V C GR+ D+ +D+R SPT+G W S+ + + +Y+P G AH F+
Sbjct: 65 TRTPPGTAKFVSCPHGRVLDLVLDVRVGSPTFGKWDSVVLDSEEFQAVYLPVGVAHMFVA 124
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
L +T + Y ++ Y E++ + D + + P+ + + P +SE+D+ +Q
Sbjct: 125 LADDTVMSYVLSQEYVFENELALDALDPGLGL--PIPEDVEPILSERDRTAITFDQA 179
>gi|237746138|ref|ZP_04576618.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oxalobacter formigenes
HOxBLS]
gi|229377489|gb|EEO27580.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Oxalobacter formigenes
HOxBLS]
Length = 182
Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 4/175 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I VRI+ F + G+F +T+ K LG F ++ + + I GL +Q P
Sbjct: 8 IPDVRIVVPAVFRNGEGFFPETFDLDAFRKALGKPVGFAEEIQTHTGRHELI-GLRYQMP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P QA+LV + G++F +AVD+R++SPT+ WV +S NG + +IP GFA G +TL
Sbjct: 67 PCVQARLVHVVNGQVFHVAVDLRKSSPTFSRWVGTVLSDENGYRFWIPEGFASGLVTLSD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+++ + T Y + + W D ++ I W I P VSE D L++ D
Sbjct: 127 FADIVAQTTRPYCKASERCIRWDDPAVAIDW--HGIIAPRVSECDLKGRLLDEAD 179
>gi|157413775|ref|YP_001484641.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Prochlorococcus marinus str. MIT 9215]
gi|157388350|gb|ABV51055.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Prochlorococcus marinus str. MIT 9215]
Length = 161
Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 70/163 (42%), Positives = 101/163 (61%), Gaps = 7/163 (4%)
Query: 22 SQTYSSKLLKELGL-QDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIA 80
++++ K++ + F QDN SFS G +RGLHFQ+ P+AQ KLV CI G IFD+A
Sbjct: 1 MESWNRKIILNILKKDIDFCQDNLSFS-KQGVLRGLHFQKDPFAQDKLVSCIQGSIFDVA 59
Query: 81 VDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSG 140
VD+R NS T+G WV + ++ + Q++IP GFA+GF+TL + V YK T++YS E +
Sbjct: 60 VDLRSNSKTFGKWVGVFLNDRDNEQLFIPKGFANGFLTLSESAYVKYKTTEYYSFESERY 119
Query: 141 VAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQIDSPFEY 181
V W DK + I WPL ++ P VS+KD N + + F Y
Sbjct: 120 VIWNDKVLKIRWPLNKINFRNPIVSKKDSNG---DIFEKDFIY 159
>gi|116671224|ref|YP_832157.1| dTDP-4-dehydrorhamnose reductase [Arthrobacter sp. FB24]
gi|116611333|gb|ABK04057.1| dTDP-4-dehydrorhamnose reductase [Arthrobacter sp. FB24]
Length = 474
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 55/177 (31%), Positives = 86/177 (48%), Gaps = 12/177 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQRP 61
I V + D+RGWF + + + + LGL D VQ+N SF+ GT RG+H
Sbjct: 16 IPGVVLYDLPVHGDNRGWFKENWQREKMVALGLPDFRPVQNNISFNEKAGTTRGIH--AE 73
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K + G+IF VD+R P++G + E+ + I+IP G + F TLE
Sbjct: 74 PWD--KFISVATGKIFGAWVDLREG-PSFGAVFTAELDPSQ--AIFIPRGVGNAFQTLED 128
Query: 122 NTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
NT Y V D +S + + D++ I+WP+ +S+KD+ P L +
Sbjct: 129 NTAYTYLVNDHWSADAQGQYTFLNLADETAAISWPVP-LEEAELSDKDKAHPRLADV 184
>gi|183602162|ref|ZP_02963530.1| possible fused dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase enzyme involved
[Bifidobacterium animalis subsp. lactis HN019]
gi|219683072|ref|YP_002469455.1| dTDP-4-dehydrorhamnose reductase [Bifidobacterium animalis subsp.
lactis AD011]
gi|241191394|ref|YP_002968788.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|241196800|ref|YP_002970355.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|183218655|gb|EDT89298.1| possible fused dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase enzyme involved
[Bifidobacterium animalis subsp. lactis HN019]
gi|219620722|gb|ACL28879.1| dTDP-4-dehydrorhamnose reductase [Bifidobacterium animalis subsp.
lactis AD011]
gi|240249786|gb|ACS46726.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|240251354|gb|ACS48293.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|289177519|gb|ADC84765.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bifidobacterium animalis
subsp. lactis BB-12]
gi|295794387|gb|ADG33922.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bifidobacterium animalis
subsp. lactis V9]
Length = 483
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 52/180 (28%), Positives = 77/180 (42%), Gaps = 13/180 (7%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHFQ 59
NI + + D+RGWF + + + LGL F VQ+N SF+ G RG+H
Sbjct: 13 NIPGLLVFDLPVHGDNRGWFKENWQKAKMTALGLPKDFQPVQNNVSFNAKRGVTRGIH-- 70
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P+ K + G IF VD+R T+G + + + IY+P G + F L
Sbjct: 71 AEPWD--KFISLATGEIFGAWVDLRPGD-TFGQVYTTRLDPS--KAIYVPRGVGNSFQAL 125
Query: 120 EMNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E T Y V +S+E V D ++I WP+ +SE D + P L
Sbjct: 126 EDGTAYTYLVNAHWSLEQKKTYTFVNLADPELNIQWPIP-LEQAELSEADLHHPMLKDAK 184
>gi|257077381|ref|ZP_05571742.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ferroplasma acidarmanus fer1]
Length = 199
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 69/177 (38%), Positives = 109/177 (61%), Gaps = 8/177 (4%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+++ ++KF+D+RG+F + Y K+L++ +Q+ F Q N SFS RG HFQ P
Sbjct: 31 IKDVKLVNSKKFDDNRGFFEEVYREKILEDFNIQNKFSQVNLSFS-KKNVFRGFHFQLNP 89
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q KL+ I+G+I D +D+R++S ++ C V EI+ +G IYIP GFAHGF+ LE
Sbjct: 90 ELQGKLITVISGKIIDYGIDLRKDSKSFKCHVEYEIT--SGKMIYIPEGFAHGFLALED- 146
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ V+Y T+ ++ DSG+ + DK ++I+ P +SEKD+ L LN++ F
Sbjct: 147 SYVLYLTTNEFNQSLDSGIRYDDKELNISLP----DNIIISEKDKKLKHLNELALDF 199
>gi|159037628|ref|YP_001536881.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salinispora arenicola
CNS-205]
gi|157916463|gb|ABV97890.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salinispora arenicola
CNS-205]
Length = 187
Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 4/176 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ + + +D RG F + +G + Q NHS S G +RG+HF
Sbjct: 6 LAVPGSFEFTPQTHDDHRGVFVSPMQQTPFVEAVGHRFEVAQTNHSRSAR-GVLRGVHFT 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C GR+ D+ VD+R SP +G W ++E+ + +Y+P G H F+ L
Sbjct: 65 ATPPGQAKYVHCPHGRVLDVVVDLRVGSPAFGTWDAVELDPISFRAVYLPVGVGHTFLAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E ++ V Y + Y+ E + GV D + + WP +SE+D+ L +
Sbjct: 125 EDDSIVSYLASTEYAAERELGVNPLDPQLALPWP--KGTEFCLSERDRTAVSLEEA 178
>gi|268680389|ref|YP_003304820.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfurospirillum deleyianum
DSM 6946]
gi|268618420|gb|ACZ12785.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfurospirillum deleyianum
DSM 6946]
Length = 190
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 54/182 (29%), Positives = 90/182 (49%), Gaps = 3/182 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ I + + + D+RG+ + + + + +G + F QD S S G IRGLH
Sbjct: 6 LEIPELILCEPVFHNDNRGFVFEAFKKESFNKFVGYEVDFCQDIISHS-KYGVIRGLHTN 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+AQ+KLV + G+I D+AVD R SPT+ VS+E+ Q+++P GF HGF L
Sbjct: 65 TLNFAQSKLVSVLRGKILDVAVDFRVGSPTFAKVVSVELDDVENKQLFVPKGFLHGFSVL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
V K+ ++ GV + D +++ W + + + + D L + SPF
Sbjct: 125 SNKAIVNMKIDRYFESGESIGVRYNDCDLNVEWKIKPQDI-ILGKADIGLKMFSDAVSPF 183
Query: 180 EY 181
+Y
Sbjct: 184 DY 185
>gi|38232977|ref|NP_938744.1| putative bifunctional protein [Corynebacterium diphtheriae NCTC
13129]
gi|38199235|emb|CAE48866.1| Putative bifunctional protein [Corynebacterium diphtheriae]
Length = 448
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 57/174 (32%), Positives = 81/174 (46%), Gaps = 13/174 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I V I+ D+RGWF + + + + GL D VQ+N SF+ + G RGLH
Sbjct: 8 IAGVVIVDLDLHGDNRGWFKENWQREKMVAAGLPDFQPVQNNISFNAERGVTRGLH--AE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K V G +F D+R S T+G V+ I+ +++P G A+GF L
Sbjct: 66 PWD--KFVSVAHGEVFGAWCDLREGSDTFGEVVTCTITP--HTAVFVPRGVANGFQALVD 121
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
NT Y V D +S + D I WPL T +SEKD+ P L +
Sbjct: 122 NTSYTYLVNDHWSPDATYTAVNLD---MIDWPLPPT---EISEKDRCHPQLAEA 169
>gi|315606109|ref|ZP_07881140.1| dTDP-4-keto-L-rhamnose
reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Actinomyces sp. oral taxon 180 str. F0310]
gi|315312391|gb|EFU60477.1| dTDP-4-keto-L-rhamnose
reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Actinomyces sp. oral taxon 180 str. F0310]
Length = 475
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 11/179 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQRP 61
I + D+RGWF + + + + LGL D VQ+N SF+ G RG+H
Sbjct: 15 IPGFLRIDVTVHGDNRGWFKENWQREKMVALGLPDFHPVQNNISFNDQIGVTRGIH--AE 72
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K V GR+F VD+R P++G + I G+ +++P G + + TLE
Sbjct: 73 PWD--KFVSVATGRVFGAWVDLREG-PSFGTVYTTIIDP--GVAVFVPRGVGNAYQTLEP 127
Query: 122 NTEVIYKVTDFYSVEHDSG-VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
NT Y V D +S + + D+++ I WP+ +SEKD+ P L + +PF
Sbjct: 128 NTAYTYLVNDHWSPDAQYTFLNLADETVAIDWPIP-LERAILSEKDKGHPRLGDV-APF 184
>gi|167648878|ref|YP_001686541.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caulobacter sp. K31]
gi|167351308|gb|ABZ74043.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Caulobacter sp. K31]
Length = 189
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 59/175 (33%), Positives = 92/175 (52%), Gaps = 3/175 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ + + +FED RG + G + F+Q+N S + + G IRGLHFQ
Sbjct: 15 GLEGTWLHRPPRFEDPRGDTGPVLVDADWRAFGWRG-FIQENQSRTPNAGVIRGLHFQSG 73
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+AQA++VR + G + +A+D R SPT+G ++SA G +++P G AHG LE
Sbjct: 74 DHAQARIVRVVQGAAYSVALDPRPESPTFGRHAGAQLSARGGTLMFVPAGLAHGLQVLEP 133
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+T V + ++ GV W D S I WP+ ++ SVS+ DQ LP L ++
Sbjct: 134 DTIVCWATDHPFTPIARGGVVWNDPSAAIAWPITASV--SVSDADQALPRLTDLE 186
>gi|325261272|ref|ZP_08128010.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium sp. D5]
gi|324032726|gb|EGB94003.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium sp. D5]
Length = 193
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 59/178 (33%), Positives = 94/178 (52%), Gaps = 6/178 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+++ ++ K D RG F + YS L + G+ + ++ S G IR LHFQR
Sbjct: 10 LDLEGAYLIHPFKATDIRGEFIKDYSLSLFNDNGITHNLKEVFYTVS-HKGVIRALHFQR 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
QAKLVRCI+GRI+D+ VD+R S T+ W ++ N ++ IP FAHG++ LE
Sbjct: 69 V-KEQAKLVRCISGRIYDVIVDLRPESKTFMQWRGFNLTGENCWELLIPQHFAHGYLVLE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD---TILPSVSEKDQNLPFLNQI 175
+ V YK + + E+D G+ W D I + WP+ + +++KD+ L +
Sbjct: 128 D-SIVSYKCAEAFYWEYDDGIMWNDPDIAVDWPIQEIGGNENLILADKDKVLQSFKEF 184
>gi|119961083|ref|YP_948860.1| dTDP-4-keto-L-rhamnose
reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Arthrobacter aurescens TC1]
gi|119947942|gb|ABM06853.1| dTDP-4-keto-L-rhamnose
reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Arthrobacter aurescens TC1]
Length = 477
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 12/177 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I V + D+RGWF + + + + L L D VQ+N SF+ GT RG+H
Sbjct: 16 IPGVVLFDLPVHGDNRGWFKENWQREKMLALALPDFKPVQNNVSFNEKVGTTRGIH--AE 73
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K + +G+IF VD+R+ PT+G + + + I+IP G + F TLE
Sbjct: 74 PWD--KFISVASGKIFGAWVDLRQG-PTFGNVFTATMDPSQ--AIFIPRGVGNAFQTLED 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQ---DKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
NT Y V D +S + ++ D++ I WP+ + +S+KD+ P L+++
Sbjct: 129 NTAYTYLVNDHWSADAQGQYSFLNLADETAAIDWPIPLSA-AELSDKDKAHPRLSEV 184
>gi|121611332|ref|YP_999139.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Verminephrobacter eiseniae
EF01-2]
gi|121555972|gb|ABM60121.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Verminephrobacter eiseniae
EF01-2]
Length = 218
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 35/204 (17%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE---------------------------- 32
+ + + ++ + D RG F++ + ++ L++
Sbjct: 9 LPLAGLLRVQRQPLVDERGAFARLFCAQELRDGMLDGMPDGAAGVAGAAPGAAGNGPPHG 68
Query: 33 ----LGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSP 88
L Q NHS + GT+RGLH+QRPP+A+ KLV C+ G ++D+A+D+R+ SP
Sbjct: 69 PTAWLAPPAQIAQINHSHTALRGTLRGLHYQRPPHAEGKLVSCLRGAVWDVALDLRQGSP 128
Query: 89 TYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSI 148
T+ W + +SA+NG + IP GFAHGF L + E++Y ++ +G+ + +
Sbjct: 129 TFLHWHAECLSADNGCALLIPPGFAHGFQALTDDAELLYCHWCAHAPAAQAGLHPLEPRL 188
Query: 149 DITWPLLDTILPSVSEKDQNLPFL 172
I WPL +S +D +L
Sbjct: 189 AIGWPLPAG---RISPRDAGQAWL 209
>gi|153806438|ref|ZP_01959106.1| hypothetical protein BACCAC_00702 [Bacteroides caccae ATCC 43185]
gi|149131115|gb|EDM22321.1| hypothetical protein BACCAC_00702 [Bacteroides caccae ATCC 43185]
Length = 189
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 58/175 (33%), Positives = 93/175 (53%), Gaps = 6/175 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ + D RG F + Y+ L K+ G+ + ++ S G IR HFQ
Sbjct: 11 SLKGAYEIIPFYATDERGGFVKDYNIDLFKQNGIDHELKEVFYTIS-KKGVIRATHFQLV 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
QAKLVRCI+G ++D+ VD+R +SPT+G W +++ +N +Y+P F HG++ LE
Sbjct: 70 -KQQAKLVRCISGHVYDVIVDLRPDSPTFGKWQGFDLTGDNQKTLYVPQFFGHGYLVLED 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP---LLDTILPSVSEKDQNLPFLN 173
+ V YK + + E DSG+ + D I+I WP + ++SEKD +L
Sbjct: 129 -SIVSYKCGEVFYGEGDSGIMYNDPDINIEWPFEKIGGIENLTISEKDTHLMSFK 182
>gi|87303221|ref|ZP_01086014.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. WH 5701]
gi|87282116|gb|EAQ74077.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus sp. WH 5701]
Length = 133
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 51/123 (41%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 53 IRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGF 112
+RGLH+Q Q KLVRC G +FD+AVD+R+ SP++G WV + Q+++P GF
Sbjct: 2 LRGLHYQLVQP-QGKLVRCSQGSVFDVAVDVRQGSPSFGRWVGTILDDVTHHQLWVPPGF 60
Query: 113 AHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWP-LLDTILPSVSEKDQNLPF 171
AHGF+ L + Y +D+Y + G+AW D ++ ITWP L + P +S KD P
Sbjct: 61 AHGFLVLSDLADFCYLCSDYYHPLSEQGIAWNDPAVGITWPQLPAGVEPQLSAKDLANPA 120
Query: 172 LNQ 174
L Q
Sbjct: 121 LAQ 123
>gi|284988977|ref|YP_003407531.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geodermatophilus obscurus DSM
43160]
gi|284062222|gb|ADB73160.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geodermatophilus obscurus DSM
43160]
Length = 187
Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 7/170 (4%)
Query: 2 NINPVRILKTR-KFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQ 59
+ V + ED RGWF +T + G+ F+QD+ S S G +RG+H +
Sbjct: 7 ELADVVCFLPETRHEDERGWFVRTLDVAVADRAGVDARAFLQDSQSRSRQ-GVLRGMHGR 65
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+AKLVRC G + D+ VD R +SPT+G + + G +Y+P GF HGF L
Sbjct: 66 AG-AGEAKLVRCARGAVLDVLVDTRPSSPTFGRSATFRLDDETGRHLYVPPGFLHGFQVL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
+V Y++ + D V + D + + WPL T +S +D
Sbjct: 125 TPEADVCYRIDREHDPSEDLAVRYDDPDLALPWPLPVTA---ISPRDAAA 171
>gi|213962263|ref|ZP_03390526.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga sputigena
Capno]
gi|213954929|gb|EEB66248.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Capnocytophaga sputigena
Capno]
Length = 181
Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 62/180 (34%), Positives = 97/180 (53%), Gaps = 8/180 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V I++ D RG F +T+++ L + G+ + +S S IRG+HFQ P
Sbjct: 8 SIEGVYIIENFNAFDDRGLFVKTFNTDFLNQKGIDFQINESYYSISNK-NVIRGMHFQLP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P KLV I+G + D+ +D+R+ S TY ++S+E+S N +YIP G AHGF +LE
Sbjct: 67 PDDHQKLVYVISGSVIDVVLDLRKESKTYKQYISIELSDKNHKSVYIPKGLAHGFKSLEN 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS--PF 179
NT ++Y V Y+ D+G+ + S W L P +S +D + P L+ + PF
Sbjct: 127 NTIMMYNVGTTYNPTSDAGIHYN--SFGFNWDLEK---PILSTRDLSFPTLDDFSTINPF 181
>gi|328955704|ref|YP_004373037.1| dTDP-4-dehydrorhamnose 3,5-epimerase; dTDP-4-dehydrorhamnose
reductase [Coriobacterium glomerans PW2]
gi|328456028|gb|AEB07222.1| dTDP-4-dehydrorhamnose 3,5-epimerase ;dTDP-4-dehydrorhamnose
reductase [Coriobacterium glomerans PW2]
Length = 486
Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 12/178 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQR 60
+I + +L D+RGWF + + + LGL D VQ+N S++ G RG+H
Sbjct: 13 DIPGLVVLDLPVHGDNRGWFKENWQRAKMVALGLPDIRPVQNNISYNTSRGVTRGIH--A 70
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + G IF VD+R T+G + + + I++P G + F TL
Sbjct: 71 EPWD--KYISIAIGEIFGAWVDLRPG-ATFGRVFTCTLDPS--KAIFVPRGVGNAFQTLA 125
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T Y V +S+ V D + I WP+ T +S+ D+ P L ++
Sbjct: 126 DGTTYTYLVDAHWSLAQKRTYTFVNLADPDLAIDWPIPLTA-AELSDADRAHPPLREV 182
>gi|167751722|ref|ZP_02423849.1| hypothetical protein EUBSIR_02731 [Eubacterium siraeum DSM 15702]
gi|167655530|gb|EDR99659.1| hypothetical protein EUBSIR_02731 [Eubacterium siraeum DSM 15702]
gi|291531200|emb|CBK96785.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium siraeum 70/3]
gi|291557990|emb|CBL35107.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Eubacterium siraeum V10Sc8a]
Length = 191
Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 6/181 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + + +D RG F++ YS ++ + G++ + ++ S+ G IR LHFQR
Sbjct: 11 EIKGLIEVTPFNADDIRGCFTKDYSKEVFEANGIKHDLAEVFYTTSYK-GVIRALHFQRE 69
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KLVRCI G ++D+ VD+R++SPT+ W++ E+ +I +P G AHG++ LE
Sbjct: 70 -KQQPKLVRCIHGHVYDVVVDLRKDSPTFKKWLAFELIGEKHNEILVPAGCAHGYLVLED 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL---DTILPSVSEKDQNLPFLNQIDSP 178
+ V YK + + E+D G+ W D I + W L +++KD+NL + S
Sbjct: 129 -SIVSYKCGEKFYGEYDDGIMWNDPDIAVDWKLDRVGGIDKVILADKDKNLQTFKEFMSK 187
Query: 179 F 179
+
Sbjct: 188 Y 188
>gi|220913157|ref|YP_002488466.1| dTDP-4-dehydrorhamnose reductase [Arthrobacter chlorophenolicus A6]
gi|219860035|gb|ACL40377.1| dTDP-4-dehydrorhamnose reductase [Arthrobacter chlorophenolicus A6]
Length = 474
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 12/177 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQRP 61
I V + D+RGWF + + + + LGL D VQ+N SF+ GT RG+H
Sbjct: 16 IPGVVLYDLPVHGDNRGWFKENWQREKMVALGLPDFRPVQNNISFNEKAGTTRGIH--AE 73
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K + GRIF VD+R P++G + E+ + I+IP G + F TLE
Sbjct: 74 PWD--KFISVATGRIFGAWVDLREG-PSFGAVFTAELDPSQ--AIFIPRGVGNAFQTLED 128
Query: 122 NTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
NT Y V D +S + + D++ ++WP+ +S+KD+ P + +
Sbjct: 129 NTAYTYLVNDHWSADAQGQYTFLNLADETAAVSWPIPLD-QAELSDKDKAHPRMADV 184
>gi|296118114|ref|ZP_06836696.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Corynebacterium ammoniagenes DSM 20306]
gi|295969000|gb|EFG82243.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Corynebacterium ammoniagenes DSM 20306]
Length = 468
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 58/175 (33%), Positives = 85/175 (48%), Gaps = 13/175 (7%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
+I+ + I+ D+RGWF + + + + GL D VQ N SF+ G RGLH
Sbjct: 7 DIDGLSIIHLDVHGDNRGWFKENWQRTTMGQAGLPDFGPVQHNLSFNASAGVTRGLH--A 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ KLV G++F D+R S +YG V EI + +++P G A+GF LE
Sbjct: 65 EPWD--KLVSIAYGKVFGAWCDLREGSTSYGQLVHAEIGPD--KAVFVPRGVANGFQALE 120
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
NT Y V+D +S + D + WPL T +SEKD+ P L +
Sbjct: 121 DNTVYSYLVSDHWSPDAQYTAVNLD---MVDWPLTPT---EISEKDRAHPQLVDV 169
>gi|227505632|ref|ZP_03935681.1| dTDP-4-keto-6-deoxyglucose-3, 5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
striatum ATCC 6940]
gi|227197785|gb|EEI77833.1| dTDP-4-keto-6-deoxyglucose-3, 5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
striatum ATCC 6940]
Length = 447
Score = 177 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 58/174 (33%), Positives = 84/174 (48%), Gaps = 14/174 (8%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I + IL+ D+RGWF + + + + GL D VQ+N SF+ G RGLH
Sbjct: 8 IEGLLILELDVHSDNRGWFKENWQRAKMLDAGLPDFQPVQNNVSFNAARGVTRGLH--AE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ KLV G++F D+R SPTYG V+ EI +++P G A+GF LE
Sbjct: 66 PWD--KLVSIAHGKVFGAWCDVREGSPTYGELVTHEIGPET--AVFVPWGVANGFQALEE 121
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y V D +S + + D + WPL T +S+KD+ P L +
Sbjct: 122 TA-YSYLVNDHWSPDAEYTFVNLD---MVDWPLEPT---EISDKDRAHPRLADV 168
>gi|119962499|ref|YP_947906.1| dTDP-4-keto-L-rhamnose
reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Arthrobacter aurescens TC1]
gi|119949358|gb|ABM08269.1| dTDP-4-keto-L-rhamnose
reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Arthrobacter aurescens TC1]
Length = 469
Score = 177 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 12/177 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I + + + D RGWF + + ++++GL D VQ+N SF+ GTIRG H
Sbjct: 14 IPGLLLFELAVHGDERGWFKENWHRAKMRDIGLPDFGPVQNNISFNAARGTIRGFH--AE 71
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K V +GRIF VD+R PT+G E++A +++P G + F TLE
Sbjct: 72 PWD--KFVSLASGRIFGAWVDLREG-PTFGTSFCAELTA--HDAVFVPRGVGNAFQTLED 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQ---DKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+T Y V D +S E + D+ + + WP+ +S +D+ P L +
Sbjct: 127 DTAYTYLVNDHWSAEAQRDYTFLNLADEHVAVPWPIP-LKSAILSPQDKKHPRLADV 182
>gi|227497969|ref|ZP_03928149.1| dTDP-4-dehydrorhamnose reductase [Actinomyces urogenitalis DSM
15434]
gi|226832627|gb|EEH65010.1| dTDP-4-dehydrorhamnose reductase [Actinomyces urogenitalis DSM
15434]
Length = 490
Score = 177 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 11/179 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I + D+RGWF + + + + LGL D VQ+N SF+ + G RG+H
Sbjct: 30 IPGFLRIDLSVHGDNRGWFKENWQREKMVALGLPDFGPVQNNISFNDEVGVTRGIH--AE 87
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K V GR+F VD+R P++G + EI + +++P G + + TLE
Sbjct: 88 PWD--KFVSVATGRVFGAWVDLREG-PSFGTVYTTEIDPSV--AVFVPKGVGNAYQTLEP 142
Query: 122 NTEVIYKVTDFYSVEHDSG-VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
NT Y V D +S E + D++ ++ WP+ +S+KD+ P L ++ +PF
Sbjct: 143 NTAYTYLVNDHWSPEARYTFLNLADETANVPWPIP-LEEAVLSDKDKAHPRLAEV-TPF 199
>gi|262276760|ref|ZP_06054553.1| dTDP-4-dehydrorhamnose 3,5-epimerase [alpha proteobacterium
HIMB114]
gi|262223863|gb|EEY74322.1| dTDP-4-dehydrorhamnose 3,5-epimerase [alpha proteobacterium
HIMB114]
Length = 172
Score = 177 bits (451), Expect = 6e-43, Method: Composition-based stats.
Identities = 66/180 (36%), Positives = 101/180 (56%), Gaps = 15/180 (8%)
Query: 1 MNI-----NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG 55
M I + ++K+ + D RG F + + +++LK+ FV D SFS IRG
Sbjct: 1 MKIQKTKFKGLVLIKSNQHHDYRGHFREIHDNRVLKK-----KFVFDCMSFS-KRNVIRG 54
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
LHFQ+ +Q KL+ + G IFD+AVD+R+NS TY + +++IS + I+IP FAHG
Sbjct: 55 LHFQKK-KSQGKLISVLKGEIFDVAVDLRKNSKTYKKYFAIKISEKSNFSIFIPENFAHG 113
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F L N V YK T++ + + ++ +AW D SI I WP I +S KD+N ++
Sbjct: 114 FFCLSKNCIVHYKCTNYRNKKTETTLAWNDPSIGIKWPKKKKI---LSPKDKNGRSFEEL 170
>gi|23015347|ref|ZP_00055126.1| COG1898: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Magnetospirillum magnetotacticum MS-1]
Length = 171
Score = 177 bits (451), Expect = 6e-43, Method: Composition-based stats.
Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
Query: 3 INPVRILKT-RKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V ++ FED RG + +TY+ +L G+ FVQD+ S S +RG+H
Sbjct: 10 LDGVLLITPPTIFEDFRGHYIETYNRELYNAAGITVDFVQDDISVS-QHNVLRGIHGDGG 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ KLV C+ GR + V+ +SP Y W +S N Q+ IP F +G + L
Sbjct: 69 TW---KLVSCLHGRFYLAVVNNDPDSPQYRKWTGFTLSDTNRHQVLIPPKFGNGHLVLSD 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
YK Y + W D + I WP D P +S +DQ L
Sbjct: 126 WAIFHYKQNSQYDRSSQFTILWNDPAYGIWWPRTD---PILSRRDQGL 170
>gi|227832078|ref|YP_002833785.1| dTDP-4-dehydrorhamnose reductase [Corynebacterium aurimucosum ATCC
700975]
gi|262184067|ref|ZP_06043488.1| dTDP-4-dehydrorhamnose reductase [Corynebacterium aurimucosum ATCC
700975]
gi|227453094|gb|ACP31847.1| dTDP-4-dehydrorhamnose reductase [Corynebacterium aurimucosum ATCC
700975]
Length = 454
Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I + I++ D+RGWF + + + + GL D VQ+N SF+ + G RGLH
Sbjct: 8 IEGLLIVELDVHGDNRGWFKENWQREKMVAAGLPDFQPVQNNVSFNAEKGVTRGLH--AE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ KLV +GR F D+R S T+G V+ E+ + +++P G A+GF LE
Sbjct: 66 PWD--KLVSVASGRAFGAWCDLREGSATFGQLVTHELREDV--AVFVPRGVANGFQALEA 121
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSID-ITWPLLDTILPSVSEKDQNLPFLNQI 175
Y V D +S + + + ++ + WPL T +S+KD+ P L +
Sbjct: 122 CA-YSYLVNDHWSPDAE----YTCVNLGMVDWPLEPT---EISDKDKEHPALADV 168
>gi|171742181|ref|ZP_02917988.1| hypothetical protein BIFDEN_01287 [Bifidobacterium dentium ATCC
27678]
gi|171277795|gb|EDT45456.1| hypothetical protein BIFDEN_01287 [Bifidobacterium dentium ATCC
27678]
Length = 485
Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 12/179 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
NI + + D+RGWF + + + ELGL D VQ+N SF+ G RG+H
Sbjct: 16 NIPGLLVFDLPVHGDNRGWFKENWQRAKMLELGLPDFGPVQNNISFNAKKGVTRGIH--A 73
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + G IF VD+R ++G + + + IY+P G + F LE
Sbjct: 74 EPWD--KYISIATGEIFGAWVDLRPG-ESFGQVYTTRLDPS--KAIYVPRGVGNSFQALE 128
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
T Y V +S+E V D ++I WP+ SE D + P L
Sbjct: 129 DGTAYTYLVNAHWSLEQKKTYTFVNLADPELNIPWPIP-LEESERSEADLHHPMLKDAK 186
>gi|269127004|ref|YP_003300374.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermomonospora curvata DSM
43183]
gi|268311962|gb|ACY98336.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermomonospora curvata DSM
43183]
Length = 208
Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats.
Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 6/178 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHF 58
+ + F D+RG + + +G F Q HS S G +RG+HF
Sbjct: 6 LAVAGAFEFVPPIFRDARGQVVTPFHGEGFSRVGGHRAFPVAQTIHSVS-RRGVVRGVHF 64
Query: 59 QRPPYAQ-AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P + AK V C GR+ DI VD+R SPT+G + ++ + ++ +Y+P G H F+
Sbjct: 65 TVTPPGRTAKYVFCPHGRVLDIVVDLRLGSPTFGRYDAVPLGPDDCRAVYLPVGVGHAFV 124
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
L + + Y +++ ++ E++ ++ D + + P+ I P +SE+D+ P L Q+
Sbjct: 125 ALRDGSVMSYLLSECFTPENERELSVFDPRLRL--PIPSDIEPILSERDRKAPTLEQV 180
>gi|306822149|ref|ZP_07455531.1| dTDP-4-dehydrorhamnose reductase [Bifidobacterium dentium ATCC
27679]
gi|304554531|gb|EFM42436.1| dTDP-4-dehydrorhamnose reductase [Bifidobacterium dentium ATCC
27679]
Length = 485
Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats.
Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 12/179 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
NI + + D+RGWF + + + ELGL D VQ+N SF+ G RG+H
Sbjct: 16 NIPGLLVFDLPVHGDNRGWFKENWQRAKMLELGLPDFGPVQNNISFNAKKGVTRGIH--A 73
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + G IF VD+R ++G + + + IY+P G + F LE
Sbjct: 74 EPWD--KYISIATGEIFGAWVDLRPG-ESFGQVYTTRLDPS--KAIYVPRGVGNSFQALE 128
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
T Y V +S+E V D ++I WP+ SE D + P L
Sbjct: 129 DGTAYTYLVNAHWSLEQKKTYTFVNLADPELNIQWPIP-LEESERSEADLHHPMLKDAK 186
>gi|326332007|ref|ZP_08198292.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Nocardioidaceae bacterium Broad-1]
gi|325950145|gb|EGD42200.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Nocardioidaceae bacterium Broad-1]
Length = 460
Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats.
Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 10/175 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ D+RGWF + + + ELGL D VQ+N SF+ G RG+H
Sbjct: 11 IPGLLVVHLPVHGDARGWFKENWQRSKMVELGLPDFGPVQNNMSFNASRGATRGIH--TE 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K V GR+F VD+R S ++G S+EI +++P G + + LE
Sbjct: 69 PWD--KFVSVACGRVFAAWVDMREGS-SFGTTFSVEIGPET--AVFVPRGVGNSYQALED 123
Query: 122 NTEVIYKVTDFYSVEH-DSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T Y V D + H + D++ I WP+ +SEKD+ P L +I
Sbjct: 124 RTVYSYLVNDHWRPGHAYPALHLGDETAAIPWPIPLD-SAEISEKDRANPRLAEI 177
>gi|153878062|ref|ZP_02004470.1| truncated dTDP-4-dehydrorhamnose 3,5-epimerase [Beggiatoa sp. PS]
gi|152065474|gb|EDN65530.1| truncated dTDP-4-dehydrorhamnose 3,5-epimerase [Beggiatoa sp. PS]
Length = 116
Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats.
Identities = 51/119 (42%), Positives = 69/119 (57%), Gaps = 4/119 (3%)
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
+HFQ+ Y Q KLV G +FD+AVDIR++SPT+G WV + +SA Q Y+P G AHG
Sbjct: 1 MHFQKQ-YPQGKLVYVTQGTVFDVAVDIRKDSPTFGKWVGITLSAEKHQQFYVPPGLAHG 59
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
F + + YK TD+Y E + + W D I I WP+ P +S KD N P+L
Sbjct: 60 FCVVSEQADFHYKCTDYYHQEDEGCIRWDDPDIGIDWPITH---PLLSTKDANAPYLKD 115
>gi|309802229|ref|ZP_07696337.1| putative dTDP-4-dehydrorhamnose reductase [Bifidobacterium dentium
JCVIHMP022]
gi|308221112|gb|EFO77416.1| putative dTDP-4-dehydrorhamnose reductase [Bifidobacterium dentium
JCVIHMP022]
Length = 482
Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats.
Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 12/179 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
NI + + D+RGWF + + + ELGL D VQ+N SF+ G RG+H
Sbjct: 13 NIPGLLVFDLPVHGDNRGWFKENWQRAKMLELGLPDFGPVQNNISFNAKKGVTRGIH--A 70
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + G IF VD+R ++G + + + IY+P G + F LE
Sbjct: 71 EPWD--KYISIATGEIFGAWVDLRPG-ESFGQVYTTRLDPS--KAIYVPRGVGNSFQALE 125
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
T Y V +S+E V D ++I WP+ SE D + P L
Sbjct: 126 DGTAYTYLVNAHWSLEQKKTYTFVNLADPELNIQWPIP-LEESERSEADLHHPMLKDAK 183
>gi|226365215|ref|YP_002782998.1| dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase [Rhodococcus opacus
B4]
gi|226243705|dbj|BAH54053.1| putative dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase [Rhodococcus
opacus B4]
Length = 189
Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 16/184 (8%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELG----------LQDVFVQDNHSFSFDCG 51
++ V + F D RG F++T+ +++ + FVQD+ S S G
Sbjct: 8 ELDDVLLFTPEPFRDGRGLFTRTFDAQIFDDAVASRASTGRVVRAADFVQDSQSRSVR-G 66
Query: 52 TIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTG 111
IRG+H + +AKLVRC G I+D+ VD+RR SPT+G + + +++P G
Sbjct: 67 VIRGMHCRSG-DGEAKLVRCARGAIYDVLVDVRRTSPTFGRKQAFRLDDETFSHLFVPAG 125
Query: 112 FAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPF 171
F HGF L +V Y++ + D VA+ D+S+ I WPL + S +D +
Sbjct: 126 FLHGFQALTD-CDVCYRIDRGHDPTEDLAVAYDDRSLGIEWPLPVSAT---SPRDASAGS 181
Query: 172 LNQI 175
+
Sbjct: 182 WEDL 185
>gi|270284084|ref|ZP_05965516.2| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Bifidobacterium gallicum DSM 20093]
gi|270278058|gb|EFA23912.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Bifidobacterium gallicum DSM 20093]
Length = 503
Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 13/180 (7%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHFQ 59
NI + + D+RGWF + + + LGL F VQ+N SF+ G RG+H
Sbjct: 33 NIPGLIVFDLPVHGDNRGWFKENWQKAKMTALGLPKDFEPVQNNISFNAKRGVTRGIH-- 90
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P+ K + G IF VD+R T+G + + + I++P G + F L
Sbjct: 91 AEPWD--KFISLATGEIFGAWVDLRPGV-TFGEVFTTRLDPS--KAIFVPRGVGNSFQAL 145
Query: 120 EMNTEVIYKVTDFYS---VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
E T Y V +S ++ + V D + I WP+ +SE D + P L
Sbjct: 146 EDGTAYSYLVNAHWSLDQKKNYTFVNLADPQLAIQWPIPLEDC-ELSEADLHHPLLKDAK 204
>gi|23016873|ref|ZP_00056625.1| COG1898: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Magnetospirillum magnetotacticum MS-1]
Length = 186
Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 51/173 (29%), Positives = 86/173 (49%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I + ++ D RGW + + ++ GL + Q F+ T++GLH Q P
Sbjct: 8 IKGIFDVELDPAADHRGWLIKPFDARPFAAAGLTAEWRQVIVQFTEHKNTLKGLHHQAEP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ +AKL+ I GR F ++VD+R SPT+G W + A+ +Y+ GFAHG +TL +
Sbjct: 68 FLEAKLIAPIEGRCFWVSVDLRHESPTFGQWGGAVLDADKRNSLYVSRGFAHGCLTLSDH 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
++ + YS +H +AW D + I WPLL + + ++ P +
Sbjct: 128 VNLLICADNDYSPDHGVSIAWNDPTFAIDWPLLADTEVVMKAEHRDAPPFAAV 180
>gi|297625251|ref|YP_003687014.1| dTDP-4-dehydrorhamnose reductase / dTDP-4-dehydrorhamnose
3,5-epimerase [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296921016|emb|CBL55554.1| dTDP-4-dehydrorhamnose reductase / dTDP-4-dehydrorhamnose
3,5-epimerase [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
Length = 494
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 11/179 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I + D+RGWF + + + LGL D VQ+N SF+ + G RG+H
Sbjct: 24 IPGFLVFDLTVHGDNRGWFKENWQRAKMTALGLPDFGPVQNNISFNDEVGVTRGIH--AE 81
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K + GR+F VD+R P++G + EI G+ +Y+P G + + TLE
Sbjct: 82 PWD--KFISVATGRVFGAWVDLREG-PSFGTVFTCEIDP--GVAVYVPWGVGNAYQTLEP 136
Query: 122 NTEVIYKVTDFYSVEHDSG-VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
NT Y V +S E + D+++ I WP+ +S+KD+ P L +PF
Sbjct: 137 NTAYTYLVNAHWSPEAKYTFLNLADETVAIDWPIALD-DAILSDKDRAHPRL-DAVTPF 193
>gi|325963884|ref|YP_004241790.1| dTDP-4-dehydrorhamnose reductase [Arthrobacter phenanthrenivorans
Sphe3]
gi|323469971|gb|ADX73656.1| dTDP-4-dehydrorhamnose reductase [Arthrobacter phenanthrenivorans
Sphe3]
Length = 482
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 12/177 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQRP 61
I V + DSRGWF + + + + LGL D VQ+N S++ GT RG+H
Sbjct: 16 IPGVVLYDLPVHGDSRGWFKENWQREKMLALGLPDFRPVQNNVSYNEKAGTTRGIH--AE 73
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K + G+IF VD+R P++G + E+ + I+IP G + F TLE
Sbjct: 74 PWD--KFISVATGKIFGAWVDLREG-PSFGAVFTCELDPSQ--AIFIPRGVGNAFQTLED 128
Query: 122 NTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
NT Y V D +S + + D++ I WP+ VSEKD+ P LN +
Sbjct: 129 NTAYTYLVNDHWSADAQGQYTFLNLADEASAIAWPVPLD-QAEVSEKDRTHPRLNDV 184
>gi|19551582|ref|NP_599584.1| dTDP-4-dehydrorhamnose 3,5-epimerase or related enzyme
[Corynebacterium glutamicum ATCC 13032]
gi|62389231|ref|YP_224633.1| dTDP-4-dehydrorhamnose 3,5-epimerase, dTDP-dehydrorhamnose
reductase [Corynebacterium glutamicum ATCC 13032]
gi|21323098|dbj|BAB97726.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Corynebacterium glutamicum ATCC 13032]
gi|41324565|emb|CAF19047.1| DTDP-4-DEHYDRORHAMNOSE 3,5-EPIMERASE, dtdp-dehydrorhamnose
reductase [Corynebacterium glutamicum ATCC 13032]
Length = 453
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 58/176 (32%), Positives = 88/176 (50%), Gaps = 15/176 (8%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
+I + + D+RGWF + + + LGL D VQ+N SF+ GT RG+H
Sbjct: 13 DIEGLLVFDFPVHGDNRGWFKENWQRTKMTNLGLPDFGPVQNNMSFNATAGTTRGMH--A 70
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K V G +F VD+R S TYG V+ +I+ + G +Y+P G A+GF LE
Sbjct: 71 EPWD--KFVSVAVGSVFGAWVDLRAGSSTYGNVVTQKITPDVG--VYVPRGVANGFQALE 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSID-ITWPLLDTILPSVSEKDQNLPFLNQI 175
T Y V D +S + + + +++ I WPL + +SEKD+ P L
Sbjct: 127 DGTLYTYLVNDHWSPDA----HYANVNLNMIDWPLP---ITEISEKDKKHPALIDA 175
>gi|145223884|ref|YP_001134562.1| dTDP-4-dehydrorhamnose reductase [Mycobacterium gilvum PYR-GCK]
gi|315444213|ref|YP_004077092.1| dTDP-4-dehydrorhamnose reductase [Mycobacterium sp. Spyr1]
gi|145216370|gb|ABP45774.1| dTDP-4-dehydrorhamnose reductase [Mycobacterium gilvum PYR-GCK]
gi|315262516|gb|ADT99257.1| dTDP-4-dehydrorhamnose reductase [Mycobacterium sp. Spyr1]
Length = 477
Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 10/176 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
+I + + D+RGWF + + + GL D VQ+N SF+ GT+RG+H
Sbjct: 14 SIPGLTLWDLPVHGDNRGWFKENWQRAKMVAAGLPDFGPVQNNISFNQAPGTLRGIH--A 71
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + +GRIF VD+R PT+G + EI + +++P G + F TLE
Sbjct: 72 EPWD--KFISVGSGRIFGAWVDLRSG-PTFGTVFTAEIDPS--RAVFVPRGVGNAFQTLE 126
Query: 121 MNTEVIYKVTDFYSVE-HDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T +Y V D YS + D+++ I WP+ +SEKD+ P L+++
Sbjct: 127 PETVYVYLVNDHYSPGVGYPSLNPGDEALAIEWPIPLD-RAEMSEKDRAQPPLSEV 181
>gi|309777800|ref|ZP_07672747.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Erysipelotrichaceae bacterium
3_1_53]
gi|308914432|gb|EFP60225.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Erysipelotrichaceae bacterium
3_1_53]
Length = 168
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 88/156 (56%), Gaps = 3/156 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+++ ++K D RG F + YS + ++ + + ++ S G IR +HFQ+
Sbjct: 10 LDLPDAYLIKPFISTDDRGAFIKDYSKEAFEKNNIAYDIAEVFYTIS-KKGVIRAIHFQK 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q KLVRCI GRI+D+ VD+R SPT+ W +S N ++ IP F HG++ LE
Sbjct: 69 V-MEQPKLVRCIKGRIYDVIVDLRPKSPTFKQWRGFYLSEENNFELLIPKNFGHGYLVLE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD 156
+ V YK + + E+D+G+ W D++I+I WPL +
Sbjct: 128 D-SVVSYKCAERFYGEYDTGIMWNDETININWPLEE 162
>gi|145294461|ref|YP_001137282.1| hypothetical protein cgR_0416 [Corynebacterium glutamicum R]
gi|140844381|dbj|BAF53380.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 450
Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 15/176 (8%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
+I + + D+RGWF + + + LGL D VQ+N S++ GT RG+H
Sbjct: 12 DIEGLLVFDFPVHGDNRGWFKENWQRTKMTNLGLPDFGPVQNNMSYNATAGTTRGMH--A 69
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K V G +F VD+R S TYG V+ +I+ + G +Y+P G A+GF LE
Sbjct: 70 EPWD--KFVSVAVGSVFGAWVDLRAGSSTYGNVVTQKITPDVG--VYVPRGVANGFQALE 125
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSID-ITWPLLDTILPSVSEKDQNLPFLNQI 175
T Y V D +S + + + +++ I WPL + +SEKD+ P L+
Sbjct: 126 DGTLYTYLVNDHWSPDA----HYANVNLNMIDWPLP---ITEISEKDKKHPTLDHA 174
>gi|123443293|ref|YP_001007267.1| putative epimerase [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|122090254|emb|CAL13120.1| putative epimerase [Yersinia enterocolitica subsp. enterocolitica
8081]
Length = 174
Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats.
Identities = 58/169 (34%), Positives = 100/169 (59%), Gaps = 6/169 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NI+ ++++ F D RG F +T+ ++ K GL+ ++ +S S IRG+HFQ+
Sbjct: 8 LNISGCYLIESPIFSDERGEFVKTHHQEIFKNFGLEIPSAEEYYSRS-KNNVIRGMHFQQ 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P KLV C G + D+ +DIR++S TYG ++S ++ +N I++ G AHGF++++
Sbjct: 67 YPDDHNKLVFCPEGEVLDVFLDIRKDSNTYGQFMSFILNPHNRRSIFLAKGIAHGFLSMK 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
NT ++ K + +S DSG+ W S WP+ + P +S+KD+NL
Sbjct: 127 DNTLIVCKTSTVHSPSRDSGIHWN--SFGFKWPVEN---PIISDKDRNL 170
>gi|326789497|ref|YP_004307318.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Clostridium
lentocellum DSM 5427]
gi|326540261|gb|ADZ82120.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Clostridium
lentocellum DSM 5427]
Length = 182
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 65/177 (36%), Positives = 103/177 (58%), Gaps = 3/177 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+IL+ ED+RG YS K L E G+ F++++ GT+ G+HFQ
Sbjct: 8 ELKEVKILEYACKEDNRGLKFSNYSEKELLENGIDVHFIEEDVYCPIKSGTLYGIHFQNN 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P AQ KL+ CI GR D A+D+R++SP Y W+S+E+S N QI IP GF H F++LE
Sbjct: 68 PVAQTKLLYCIEGRGIDYAIDLRKDSPQYLKWISVELSKENRRQILIPKGFGHAFISLED 127
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
NT+V+ ++ +++ ++ +AW D I I +P+ + P +++ D + P L D
Sbjct: 128 NTKVVMRIDEYFDNKYSRQIAWNDSQIAIQYPVKN---PILAQHDIDAPKLRDSDCN 181
>gi|227546956|ref|ZP_03977005.1| fused dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase enzyme involved
in rhamnose biosynthesis [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|227212557|gb|EEI80445.1| fused dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase enzyme involved
in rhamnose biosynthesis [Bifidobacterium longum subsp.
infantis ATCC 55813]
Length = 476
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 12/179 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
NI + + D+RGWF + + + LGL D VQ+N SF+ G RG+H
Sbjct: 15 NIPGLLVFDLPVHGDNRGWFKENWQRAKMTALGLPDFGPVQNNISFNAKKGVTRGIH--A 72
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + G IF VD+R ++G + + + IY+P G + F L+
Sbjct: 73 EPWD--KYISIATGEIFGAWVDLRPGD-SFGQVFTTRLDPS--KAIYVPRGVGNSFQALQ 127
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
T Y V +S+E V D ++I WP+ + SE D + P L
Sbjct: 128 DGTAYTYLVNAHWSLEQKKTYTFVNLADPELNIQWPIP-LVDSERSEADLHHPMLKDAK 185
>gi|170747686|ref|YP_001753946.1| dTDP-4-dehydrorhamnose 35-epimerase related [Methylobacterium
radiotolerans JCM 2831]
gi|170654208|gb|ACB23263.1| dTDP-4-dehydrorhamnose 35-epimerase related [Methylobacterium
radiotolerans JCM 2831]
Length = 179
Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats.
Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 6/178 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V L+ D+RG F + + L GL+ F + S S G IRG+HFQ P
Sbjct: 8 DLPGVLALRAPGSRDARGSFHKLMHAPSLAAAGLRTDFAEVYCSTSAR-GVIRGMHFQVP 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ AKLV C+ G + D+ +D+RR+SP YG V+ ++ +YIP G AHGF
Sbjct: 67 PHQHAKLVWCLCGAVTDVVLDLRRDSPGYGRAVAFDLGEEAPAGVYIPEGCAHGFAVRSG 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
++Y VT ++ D+G+ W S W + P++S++D+ P L+ +PF
Sbjct: 127 AATLLYLVTSVHAPAADAGIRWD--SFGFDWGIPH---PTLSDRDRLHPGLDAFATPF 179
>gi|304388886|ref|ZP_07370935.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis ATCC
13091]
gi|304337147|gb|EFM03332.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis ATCC
13091]
Length = 117
Score = 174 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 47/112 (41%), Positives = 69/112 (61%), Gaps = 2/112 (1%)
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
Q KLVR + G +FD+AVD+R++SPT+G WV +SA N Q+++P GFAHGF L
Sbjct: 5 TQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILSAENKRQLWVPEGFAHGFYVLSDEA 64
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +YK TD+Y+ + + + W D ++ I WPL P++S KD L +
Sbjct: 65 EFVYKCTDYYNPKAEHSLIWNDPTVGIDWPLQGE--PNLSPKDLAGKVLAEA 114
>gi|312133747|ref|YP_004001086.1| rfbc [Bifidobacterium longum subsp. longum BBMN68]
gi|311773025|gb|ADQ02513.1| RfbC [Bifidobacterium longum subsp. longum BBMN68]
Length = 475
Score = 174 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 51/179 (28%), Positives = 77/179 (43%), Gaps = 12/179 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
NI + + D+RGWF + + + +LGL D VQ+N SF+ G RG+H
Sbjct: 15 NIPGLLVFDLPVHGDNRGWFKENWQRAKMLKLGLPDFGPVQNNISFNATKGVTRGIH--A 72
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + G IF VD+R ++G + + + IY+P G + F LE
Sbjct: 73 EPWD--KYISIATGEIFGAWVDLRPG-ESFGQVFTTRLDPS--RAIYVPRGVGNSFQALE 127
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
T Y V +S+E V D ++I WP+ SE D + P L
Sbjct: 128 DGTAYTYLVNAHWSLEQKKTYTFVNLADPELNIQWPIP-LEESERSEADLHHPMLKDAK 185
>gi|311063528|ref|YP_003970253.1| RmlC/RmlD dTDP-4-dehydrorhamnose
3,5-epimerase/dTDP-4-dehydrorhamnose reductase
[Bifidobacterium bifidum PRL2010]
gi|310865847|gb|ADP35216.1| RmlC/RmlD dTDP-4-dehydrorhamnose
3,5-epimerase/dTDP-4-dehydrorhamnose reductase
[Bifidobacterium bifidum PRL2010]
Length = 476
Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats.
Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 12/179 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
NI + + D+RGWF + + + LGL D VQ+N SF+ G RG+H
Sbjct: 15 NIPGLLVFDLPVHGDNRGWFKENWQRAKMTALGLPDFGPVQNNISFNAKKGVTRGIH--A 72
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + G IF VD+R ++G + + + IY+P G + F L+
Sbjct: 73 EPWD--KFISIATGEIFGAWVDLRPGD-SFGQVFTTRLDPS--KAIYVPRGVGNSFQALQ 127
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
T Y V +S+E V D ++I WP+ SE D + P L
Sbjct: 128 DGTAYTYLVNAHWSLEQKKTYTFVNLADPELNIQWPIP-LEDSERSEADLHHPMLKDAK 185
>gi|329944296|ref|ZP_08292555.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Actinomyces sp. oral
taxon 170 str. F0386]
gi|328531026|gb|EGF57882.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Actinomyces sp. oral
taxon 170 str. F0386]
Length = 193
Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 11/179 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I + D+RGWF + + + + LGL D VQ+N SF+ + G RG+H
Sbjct: 17 IPGFLRIDLTVHGDNRGWFKENWQREKMLALGLPDFGPVQNNISFNNEVGVTRGIH--AE 74
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K V GR+F VD+R P++G + EI + +++P G + + TLE
Sbjct: 75 PWD--KFVSVATGRVFGAWVDLREG-PSFGTVYTCEIDPSV--AVFVPRGVGNAYQTLEP 129
Query: 122 NTEVIYKVTDFYSVEHDSG-VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
NT Y V D +S + + D++ +++WP+ +S+KD+ P L + +PF
Sbjct: 130 NTAYTYLVNDHWSPDAQYTFLNLADETANVSWPIP-LAEAILSDKDKAHPRLADV-APF 186
>gi|225020236|ref|ZP_03709428.1| hypothetical protein CORMATOL_00239 [Corynebacterium matruchotii
ATCC 33806]
gi|224946980|gb|EEG28189.1| hypothetical protein CORMATOL_00239 [Corynebacterium matruchotii
ATCC 33806]
Length = 505
Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats.
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 15/182 (8%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE------LGLQDVFVQDNHSFSFDCGTIRGL 56
I + +L D+RGWF + + + + + VQ+N SF+ G RGL
Sbjct: 14 IAGLYVLHLDVRPDNRGWFKENWQREKIAAIPELSRACREFRPVQNNISFNAQPGVTRGL 73
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H + K V G +F + D+R +SPT+G S I+ +++P G A+GF
Sbjct: 74 HAE----PWNKFVTIAQGEVFGVWCDLRADSPTFGKVFSTRITTEQ--AVFVPRGVANGF 127
Query: 117 MTLEMNTEVIYKVTDFYSVE-HDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
LE + Y V +S + H S V D ++ I WP+ +S D+ P L
Sbjct: 128 QALEP-SIYTYLVDAHWSPQAHYSHVNLADPALGICWPIPLD-KAEISAADRTHPLLADA 185
Query: 176 DS 177
+
Sbjct: 186 TA 187
>gi|295856706|gb|ADG46994.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bifidobacterium longum subsp.
longum]
Length = 483
Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 51/179 (28%), Positives = 76/179 (42%), Gaps = 12/179 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
NI + + D+RGWF + + + LGL D VQ+N SF+ G RG+H
Sbjct: 15 NIPGLLVFDLPVHGDNRGWFKENWQRAKMTALGLPDFGPVQNNISFNATKGVTRGIH--A 72
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + AG IF VD+R ++G + + + IY+P G + F L+
Sbjct: 73 EPWD--KYISIAAGEIFGAWVDLRPG-ESFGQVFTTRLDPS--KAIYVPRGVGNSFQALQ 127
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
T Y V +S+E V D + I WP+ SE D + P L
Sbjct: 128 DGTVYTYLVNAHWSLEQKKTYTFVNLADPELGIEWPIP-LEESERSEADLHHPMLRDAK 185
>gi|322691989|ref|YP_004221559.1| dTDP-4-dehydrorhamnose
reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Bifidobacterium longum subsp. longum JCM 1217]
gi|320456845|dbj|BAJ67467.1| dTDP-4-dehydrorhamnose
reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Bifidobacterium longum subsp. longum JCM 1217]
Length = 484
Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 51/179 (28%), Positives = 76/179 (42%), Gaps = 12/179 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
NI + + D+RGWF + + + LGL D VQ+N SF+ G RG+H
Sbjct: 15 NIPGLLVFDLPVHGDNRGWFKENWQRAKMTALGLPDFGPVQNNISFNATKGVTRGIH--A 72
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + AG IF VD+R ++G + + + IY+P G + F L+
Sbjct: 73 EPWD--KYISIAAGEIFGAWVDLRPG-ESFGQVYTTRLDPS--KAIYVPRGVGNSFQALQ 127
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
T Y V +S+E V D + I WP+ SE D + P L
Sbjct: 128 DGTVYTYLVNAHWSLEQKKTYTFVNLADPELGIEWPIP-LEESERSEADLHHPMLRDAK 185
>gi|228996409|ref|ZP_04156051.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus mycoides Rock3-17]
gi|228763372|gb|EEM12277.1| DTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus mycoides Rock3-17]
Length = 132
Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 61/132 (46%), Positives = 82/132 (62%), Gaps = 3/132 (2%)
Query: 53 IRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGF 112
IRGLHFQ P AQ KLV+ I G IFD+ VD+R+ SPTY W S ++ +N + +P GF
Sbjct: 2 IRGLHFQLEPRAQTKLVQVIQGAIFDVIVDLRKGSPTYKKWQSFLLTGDNHRLLLVPKGF 61
Query: 113 AHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
AHGF TL +T V YKV +FY DSG+AW D+ I+WP+ + P +SEKD LP
Sbjct: 62 AHGFCTLVPHTIVHYKVDEFYDASCDSGIAWNDEEFAISWPVSN---PILSEKDGMLPKF 118
Query: 173 NQIDSPFEYDGL 184
+ F++ +
Sbjct: 119 TETTHYFQFKEI 130
>gi|46204586|ref|ZP_00049777.2| COG1898: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Magnetospirillum magnetotacticum MS-1]
Length = 131
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 50/126 (39%), Positives = 74/126 (58%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + + +++ D RG+F++T+ + GL F Q + SF+ GT+RG+HF R
Sbjct: 6 LALPGLFLVRPEPHADERGFFARTHCEEEFAGHGLIGRFAQSSVSFNHRRGTVRGMHFSR 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+A+ KLVRC +G I D VD+R SPTY + +SA N +YIP G AHGF TL
Sbjct: 66 EPHAETKLVRCTSGAIHDAVVDLRPGSPTYLRTEQVTLSARNRHALYIPAGLAHGFQTLM 125
Query: 121 MNTEVI 126
TE++
Sbjct: 126 DETEIL 131
>gi|225352522|ref|ZP_03743545.1| hypothetical protein BIFPSEUDO_04145 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225156716|gb|EEG70110.1| hypothetical protein BIFPSEUDO_04145 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 473
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 51/179 (28%), Positives = 75/179 (41%), Gaps = 12/179 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
NI + + D+RGWF + + + LGL D VQ+N SF+ G RG+H
Sbjct: 13 NIPGLLVFDLPVHGDNRGWFKENWQRAKMTALGLPDFGPVQNNISFNAKKGVTRGIH--A 70
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + G +F VD+R ++G + + + IY+P G + F LE
Sbjct: 71 EPWD--KYISIATGSVFGAWVDLRPG-ESFGQVYTTVLDPS--KAIYVPRGVGNSFQALE 125
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
T Y V +S+E V D +DI WP+ SE D P L
Sbjct: 126 DGTAYTYLVNAHWSLEQKKTYTFVNLADPDLDIQWPIPLD-EAERSEADLKHPMLRDAK 183
>gi|154507643|ref|ZP_02043285.1| hypothetical protein ACTODO_00124 [Actinomyces odontolyticus ATCC
17982]
gi|153797277|gb|EDN79697.1| hypothetical protein ACTODO_00124 [Actinomyces odontolyticus ATCC
17982]
Length = 475
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 11/179 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I + D+RGWF + + + + LGL D VQ+N SF+ + G RG+H
Sbjct: 15 IPGFLRIDLTVHGDNRGWFKENWQREKMVALGLPDFQPVQNNISFNDEVGVTRGIH--AE 72
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K V GR+F VD+R P++G + I G+ +++P G + + TLE
Sbjct: 73 PWD--KFVSVATGRVFGAWVDLREG-PSFGTVYTTIIDP--GVAVFVPKGVGNSYQTLEP 127
Query: 122 NTEVIYKVTDFYSVEHDSG-VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
NT Y V D +S + + D++ + WP+ +S+KD+ P + + +PF
Sbjct: 128 NTAYTYLVNDHWSPDARYTFLNLADETAAVDWPIP-LERAILSDKDKAHPRMADV-TPF 184
>gi|159149194|gb|ABW91159.1| NDP-hexose 3,5-epimerase [Streptomyces eurythermus]
Length = 202
Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 4/174 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ ++ D RG F + + L+ G Q N + S +RG+H
Sbjct: 8 VPDAYRIQPELLPDHRGRFYEGLRYETLRAATGHAFELRQVNFTVS-HRNVLRGVHGTTM 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q K+V C+ G + VD+R SP +G L + + +Y+P G ++ L
Sbjct: 67 PPGQGKIVTCVRGAARAMVVDLRVGSPAFGHHDVLRLDPRDATALYVPDGLGLAYVALTD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+T V Y Y V D ++ + W L + P S +D P L +
Sbjct: 127 DTCVNYLCDREYVHGTIIDVDALDPALALPWDLDEP--PVRSARDAAAPTLAEA 178
>gi|325067633|ref|ZP_08126306.1| dTDP-4-dehydrorhamnose reductase / dTDP-4-dehydrorhamnose
3,5-epimerase [Actinomyces oris K20]
Length = 193
Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 53/184 (28%), Positives = 92/184 (50%), Gaps = 11/184 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I + D+RGWF + + + + LGL D VQ+N SF+ + G RG+H
Sbjct: 17 IPGFLRIDLTVHGDNRGWFKENWQREKMLALGLPDFGPVQNNISFNNEVGVTRGIH--AE 74
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K V GR+F VD+R P++G + EI + +++P G + + TLE
Sbjct: 75 PWD--KFVSVATGRVFGAWVDLREG-PSFGAVYTCEIDPSV--AVFVPRGVGNSYQTLEP 129
Query: 122 NTEVIYKVTDFYSVEHDSG-VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T Y V D +S + + D+++++ WP+ + +S+KD+ P L ++ +PF
Sbjct: 130 DTAYTYLVNDHWSADAQYTFLNLADETVNVPWPIALS-EAILSDKDKAHPRLAEV-TPFP 187
Query: 181 YDGL 184
G
Sbjct: 188 APGA 191
>gi|293189321|ref|ZP_06608044.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Actinomyces
odontolyticus F0309]
gi|292821784|gb|EFF80720.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Actinomyces
odontolyticus F0309]
Length = 475
Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 11/179 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I + D+RGWF + + + + LGL D VQ+N SF+ + G RG+H
Sbjct: 15 IPGFLRIDLTVHGDNRGWFKENWQREKMVALGLPDFQPVQNNISFNDEVGVTRGIH--AE 72
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K V GR+F VD+R P++G + I G+ +++P G + + TLE
Sbjct: 73 PWD--KFVSVATGRVFGAWVDLREG-PSFGTVYTTIIDP--GVAVFVPKGVGNSYQTLEP 127
Query: 122 NTEVIYKVTDFYSVEHDSG-VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
NT Y V D +S + + D++ + WP+ +S+KD+ P + + +PF
Sbjct: 128 NTAYTYLVNDHWSPDARYTFLNLADETAAVDWPIP-LERAILSDKDKAHPRMADV-TPF 184
>gi|326772070|ref|ZP_08231355.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Actinomyces
viscosus C505]
gi|326638203|gb|EGE39104.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Actinomyces
viscosus C505]
Length = 224
Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 11/184 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I + D+RGWF + + + + LGL D VQ+N SF+ + G RG+H
Sbjct: 48 IPGFLRIDLTVHGDNRGWFKENWQREKMLALGLPDFGPVQNNISFNNEIGVTRGIH--AE 105
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K V GR+F VD+R P++G + EI + +++P G + + TLE
Sbjct: 106 PWD--KFVSVATGRVFGAWVDLREG-PSFGAVYTCEIDPSV--AVFVPRGVGNSYQTLEP 160
Query: 122 NTEVIYKVTDFYSVEHDSG-VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NT Y V D +S + + D+++++ WP+ + +S+KD+ P L ++ +PF
Sbjct: 161 NTAYTYLVNDHWSADARYTFLNLADETVNVPWPIALS-EAILSDKDKAHPRLAEV-TPFP 218
Query: 181 YDGL 184
G
Sbjct: 219 APGA 222
>gi|320531368|ref|ZP_08032338.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320136414|gb|EFW28392.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 193
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 11/185 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I + D+RGWF + + + + LGL D VQ+N SF+ + G RG+H
Sbjct: 17 IPGFLRIDLTVHGDNRGWFKENWQREKMLALGLPDFGPVQNNISFNNEVGVTRGIH--AE 74
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K V GR+F VD+R S ++G + EI + +++P G + + TLE
Sbjct: 75 PWD--KFVSVATGRVFGAWVDLREGS-SFGAVYTCEIDPSV--AVFVPRGVGNAYQTLEP 129
Query: 122 NTEVIYKVTDFYSVEHDSG-VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
NT Y V D +S + + D++ ++ WP+ + +S+KD+ P L + +PF
Sbjct: 130 NTAYTYLVNDHWSADAQYTFLNLADETANVPWPIALS-EAILSDKDKAHPRLADV-TPFP 187
Query: 181 YDGLP 185
G
Sbjct: 188 APGAK 192
>gi|23464835|ref|NP_695438.1| fused dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase enzyme involved
in rhamnose biosynthesis [Bifidobacterium longum
NCC2705]
gi|23325419|gb|AAN24074.1| possible fused dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase enzyme involved
in rhamnose biosynthesis [Bifidobacterium longum
NCC2705]
Length = 480
Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats.
Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 12/179 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
NI + + D+RGWF + + + LGL D VQ+N SF+ G RG+H
Sbjct: 13 NIPGLIVFDLPVHGDNRGWFKENWQRAKMTALGLPDFGPVQNNISFNAKKGVTRGIH--A 70
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + G +F VD+R ++G + + + IY+P G + F LE
Sbjct: 71 EPWD--KYISIATGSVFGAWVDLRPGD-SFGQVYTTVLDPS--KAIYVPRGVGNSFQALE 125
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
T Y V +S+E V D ++I WP+ SE D + P L
Sbjct: 126 DGTAYTYLVNAHWSLEQKKTYTFVNLADPDLNIQWPIP-LEDSERSEADLHHPMLRDAK 183
>gi|289704883|ref|ZP_06501300.1| putative dTDP-4-dehydrorhamnose reductase [Micrococcus luteus SK58]
gi|289558379|gb|EFD51653.1| putative dTDP-4-dehydrorhamnose reductase [Micrococcus luteus SK58]
Length = 471
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV------FVQDNHSFSFDCGTIRGL 56
I + +L D+RGWF + + + ++ L ++ VQ+N SF+ GT RG+
Sbjct: 8 IPGLLVLDLDVHGDNRGWFKENWQREKIRALAVEHPRLASLAPVQNNISFNDAVGTTRGI 67
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ K V GRIF VD+R P++G ++E+ +++P G + +
Sbjct: 68 H--AEPWD--KYVAVAHGRIFGAWVDLREG-PSFGAVATVELGPE--KAVFVPRGVGNSY 120
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
TLE +T Y V D +S + + D + I WP+ +S+KD+ P L
Sbjct: 121 QTLEPDTAYTYLVNDHWSADAQGQYTFLNLADPTAAIAWPIP-LEDAELSDKDRAHPMLA 179
Query: 174 QI 175
+
Sbjct: 180 DV 181
>gi|323357015|ref|YP_004223411.1| dTDP-4-dehydrorhamnose reductase [Microbacterium testaceum StLB037]
gi|323273386|dbj|BAJ73531.1| dTDP-4-dehydrorhamnose reductase [Microbacterium testaceum StLB037]
Length = 469
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 12/177 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV---FVQDNHSFSFDCGTIRGLHFQ 59
I + +L D+RGWF + + + + G+ VQ+N SF+ GT RG+H
Sbjct: 16 IPGLILLDLPVHGDTRGWFKENWQREKMLAAGIDLPDFGPVQNNISFNDAAGTTRGIH-- 73
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P+ K V GRIF VD+R T+G + E+ A+ I++P G + + TL
Sbjct: 74 AEPWD--KYVSVATGRIFGAWVDLREGD-TFGAVFTAELDAST--AIFVPRGVGNSYQTL 128
Query: 120 EMNTEVIYKVTDFYSVEHDSG-VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +T Y V D +S + + D++ I WP+ + +S KD P L +
Sbjct: 129 EPDTAYTYLVNDHWSPDATYTFLNLADETAAIAWPIPLDSV-EISAKDLQHPRLADV 184
>gi|253572888|ref|ZP_04850286.1| LOW QUALITY PROTEIN: dTDP-4-dehydrorhamnose 3,5-epimerase
[Bacteroides sp. 1_1_6]
gi|251837520|gb|EES65613.1| LOW QUALITY PROTEIN: dTDP-4-dehydrorhamnose 3,5-epimerase
[Bacteroides sp. 1_1_6]
Length = 125
Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 53/164 (32%), Positives = 76/164 (46%), Gaps = 39/164 (23%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG+F +++ AQ+KLVR I G
Sbjct: 1 DDRGYFFESF--------------------------------------AQSKLVRVIKGA 22
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+ D+AVDIR+ SPT+G +VS+E++ N Q +IP GFAHGF L YK +FYS
Sbjct: 23 VLDVAVDIRKGSPTFGQYVSVELTGENHRQFFIPRGFAHGFSVLSEGMIFQYKCDNFYSP 82
Query: 136 EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ + +AW D ++I W + +SEKD P L + F
Sbjct: 83 QSEGAIAWNDPDLNIDWRIP-AEKVVLSEKDGKHPRLKDWQNVF 125
>gi|284028522|ref|YP_003378453.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Kribbella flavida DSM 17836]
gi|283807815|gb|ADB29654.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Kribbella flavida DSM 17836]
Length = 186
Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 56/176 (31%), Positives = 90/176 (51%), Gaps = 10/176 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQR 60
+I + ++ F+D RGWF +++ ++ L++LGL VQ+N S++ + G RG+H
Sbjct: 10 SIPGLLHVELEVFDDGRGWFKESFQAEKLEKLGLPHLEVVQNNVSYNAEVGVTRGIH--A 67
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + GR+F VD+R P +G + E++ G +Y+P G + F TLE
Sbjct: 68 EPWD--KYISPAFGRVFTAIVDLREG-PGFGRLETFELTPRQG--LYVPRGCGNSFCTLE 122
Query: 121 MNTEVIYKVTDFYSVEHDSG-VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
NT Y V +S + V D I++ WPL L SEKD P L+ +
Sbjct: 123 PNTVYNYLVNAHWSPDAKYTLVNLFDPRINVPWPLPKEQL-IYSEKDAGHPLLDAV 177
>gi|320095968|ref|ZP_08027584.1| dTDP-4-dehydrorhamnose reductase [Actinomyces sp. oral taxon 178
str. F0338]
gi|319977099|gb|EFW08826.1| dTDP-4-dehydrorhamnose reductase [Actinomyces sp. oral taxon 178
str. F0338]
Length = 472
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 11/185 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQRP 61
I + D+RGWF + + + + LGL D VQ+N SF+ + G RG+H
Sbjct: 15 IPGFLRIDLTVHGDNRGWFKENWQREKMVGLGLPDFRPVQNNISFNDEVGVTRGIH--AE 72
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K V GR+F VD+R P++G + I G +++P G + + TLE
Sbjct: 73 PWD--KFVSVATGRVFGAWVDLREG-PSFGTVYTTVIDP--GTAVFVPKGVGNAYQTLEP 127
Query: 122 NTEVIYKVTDFYSVEHDSG-VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
T Y V +S + + D+++ + WP+ +S+KD+ P L + +PF
Sbjct: 128 ATAYTYLVNAHWSPDARYTFLNLADETVAVPWPIP-LERAVLSDKDRAHPRLADV-TPFP 185
Query: 181 YDGLP 185
P
Sbjct: 186 APSGP 190
>gi|308235687|ref|ZP_07666424.1| fused dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase enzyme involved
[Gardnerella vaginalis ATCC 14018]
gi|311114284|ref|YP_003985505.1| bifunctional dTDP-4-keto-L-rhamnose
reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Gardnerella vaginalis ATCC 14019]
gi|310945778|gb|ADP38482.1| fused dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase enzyme involved
in rhamnose biosynthesis [Gardnerella vaginalis ATCC
14019]
Length = 480
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 49/179 (27%), Positives = 76/179 (42%), Gaps = 12/179 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
NI + + D+RGWF + + + LGL D VQ+N SF+ G RG+H
Sbjct: 13 NIPGLIVFDLPVHGDNRGWFKENWQRAKMTALGLPDFGPVQNNISFNEKRGVTRGIH--A 70
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + G +F VD+R ++G + ++ + IY+P G + F L+
Sbjct: 71 EPWD--KYISIATGEVFGAWVDLRPG-KSFGQVYTTTLNPS--KAIYVPRGVGNSFQALQ 125
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
T Y V +S+E V D + I WP+ SE D + P L
Sbjct: 126 DGTAYTYLVNAHWSLEQKKTYTFVNLADPDLHINWPIP-LEESERSEADLHHPMLKNAK 183
>gi|310286574|ref|YP_003937832.1| dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose
reductase [Bifidobacterium bifidum S17]
gi|309250510|gb|ADO52258.1| dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose
reductase [Bifidobacterium bifidum S17]
Length = 482
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 76/178 (42%), Gaps = 12/178 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
NI + + D+RGWF + + + LGL D VQ+N SF+ G RG+H
Sbjct: 13 NIPGLIVFDLPVHGDNRGWFKENWQRAKMTALGLPDFGPVQNNISFNAKKGVTRGIH--A 70
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + G +F VD+R ++G + + + IY+P G + F LE
Sbjct: 71 EPWD--KYISIATGAVFGAWVDLRPG-ESFGQVYTTRLDPS--KAIYVPRGVGNSFQALE 125
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T Y V +S+E V D +DI WP+ SE D + P L
Sbjct: 126 DGTAYTYLVNAHWSLEQKKTYTFVNLADPELDIQWPIP-LEESERSEADLHHPMLRDA 182
>gi|170516928|gb|ACB15402.1| RmlCD [Bifidobacterium longum]
Length = 483
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 12/179 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
NI + + D+RGWF + + + LGL D VQ+N S++ G RG+H
Sbjct: 15 NIPGLLVFDLPVHGDNRGWFKENWQRAKMMGLGLPDFGPVQNNISYNATKGVTRGIH--A 72
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + AG IF VD+R ++G + + + IY+P G + F L+
Sbjct: 73 EPWD--KYISIAAGEIFGAWVDLRPG-ESFGQVYTTRLDPS--RAIYVPRGVGNSFQALQ 127
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
T Y V +S+E V D ++I WP+ SE D + P L
Sbjct: 128 DGTVYTYLVNAHWSLEQKKTYTFVNLADPELNIQWPIP-LEESERSEADLHHPMLKDAK 185
>gi|224284002|ref|ZP_03647324.1| fused dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase enzyme involved
[Bifidobacterium bifidum NCIMB 41171]
gi|313141153|ref|ZP_07803346.1| dTDP-4-dehydrorhamnose reductase [Bifidobacterium bifidum NCIMB
41171]
gi|313133663|gb|EFR51280.1| dTDP-4-dehydrorhamnose reductase [Bifidobacterium bifidum NCIMB
41171]
Length = 482
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 76/178 (42%), Gaps = 12/178 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
NI + + D+RGWF + + + LGL D VQ+N SF+ G RG+H
Sbjct: 13 NIPGLIVFDLPVHGDNRGWFKENWQRAKMTALGLPDFGPVQNNISFNAKKGVTRGIH--A 70
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + G +F VD+R ++G + + + IY+P G + F LE
Sbjct: 71 EPWD--KYISIATGAVFGAWVDLRPG-ESFGQVYTTRLDPS--KAIYVPRGVGNSFQALE 125
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T Y V +S+E V D +DI WP+ SE D + P L
Sbjct: 126 DGTAYTYLVNAHWSLEQKKTYTFVNLADPELDIQWPIP-LEESERSEADLHHPMLRDA 182
>gi|300857650|ref|YP_003782633.1| dTDP-4-dehydrorhamnose reductase [Corynebacterium
pseudotuberculosis FRC41]
gi|300685104|gb|ADK28026.1| dTDP-4-dehydrorhamnose reductase [Corynebacterium
pseudotuberculosis FRC41]
gi|302329942|gb|ADL20136.1| Putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Corynebacterium
pseudotuberculosis 1002]
Length = 460
Score = 170 bits (433), Expect = 6e-41, Method: Composition-based stats.
Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 10/175 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ EDSRGWF + + L LGL VQ+N SF+ + G RGLH
Sbjct: 8 IQGMMVIHLDLHEDSRGWFKENWQESKLVGLGLTGFRPVQNNISFNAEAGVTRGLH--AE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K V G +F D+R S T+G ++ I+ +++P G A+GF LE
Sbjct: 66 PWD--KYVSVATGSVFGAWCDLREGSATFGATFTITITPET--AVFVPRGVANGFQALEA 121
Query: 122 NTEVIYKVTDFYSVE-HDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y V D ++ + H S V D +++I+WP+ ++S+KD P L
Sbjct: 122 TA-YTYLVNDHWAPDAHYSFVNLADPALNISWPIPLD-QATLSKKDTAHPPLASA 174
>gi|291457003|ref|ZP_06596393.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Bifidobacterium breve DSM 20213]
gi|291381414|gb|EFE88932.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Bifidobacterium breve DSM 20213]
Length = 483
Score = 170 bits (433), Expect = 6e-41, Method: Composition-based stats.
Identities = 49/179 (27%), Positives = 77/179 (43%), Gaps = 12/179 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
NI + + D+RGWF + + + LGL D VQ+N S++ G RG+H
Sbjct: 15 NIPGLLVFDLPVHGDNRGWFKENWQRAKMMGLGLPDFGPVQNNISYNATKGVTRGIH--A 72
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + AG +F VD+R ++G + + + IY+P G + F L+
Sbjct: 73 EPWD--KYISIAAGEVFGAWVDLRPG-ESFGQVYTTRLDPS--KAIYVPRGVGNSFQALQ 127
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
T Y V +S+E V D ++I WP+ SE D + P L
Sbjct: 128 DGTVYTYLVNAHWSLEQKKTYTFVNLADPELNIQWPIP-LEESERSEADLHHPMLKDAK 185
>gi|254456277|ref|ZP_05069706.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Pelagibacter sp.
HTCC7211]
gi|207083279|gb|EDZ60705.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Pelagibacter sp.
HTCC7211]
Length = 191
Score = 170 bits (433), Expect = 6e-41, Method: Composition-based stats.
Identities = 59/174 (33%), Positives = 90/174 (51%), Gaps = 10/174 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ I K F+D RG+F + + K L FV D +S S +RGLH Q
Sbjct: 17 KFPGLVIYKRETFDDKRGYFRELFLKKD-----LNKKFVFDYYSLS-KKNVLRGLHLQLK 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q KL+ ++G+IFD+A+D R S T+ + ++E+S N + +YIP GFAHGF +L
Sbjct: 71 -KPQGKLITVLSGKIFDVALDCRPKSKTFRQFYTVELSENENISLYIPEGFAHGFCSLAN 129
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
NT + Y+ T++ ++G+ W+DK + I WP VS KD+
Sbjct: 130 NTLLHYRCTNYRDKNSETGIYWKDKDLAINWPKKK---FFVSSKDKKNILFKNF 180
>gi|121600544|ref|YP_992265.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei SAVP1]
gi|121229354|gb|ABM51872.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Burkholderia mallei SAVP1]
Length = 125
Score = 170 bits (433), Expect = 7e-41, Method: Composition-based stats.
Identities = 52/124 (41%), Positives = 80/124 (64%), Gaps = 3/124 (2%)
Query: 53 IRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGF 112
+RGLH+Q +AQ KLVR + G +FD+AVD+RR+SP +G WV + +SA N Q+++P GF
Sbjct: 2 LRGLHYQIQ-HAQGKLVRVVDGEVFDVAVDVRRSSPNFGKWVGVRLSAENKRQLWVPAGF 60
Query: 113 AHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
AHGF+ L + + +YK TD++ E + + W DK I I WP+ P V+ KD +
Sbjct: 61 AHGFVVLSESADFLYKTTDYWYPEFERSILWSDKQIGIEWPI--DREPLVAAKDAAGKAI 118
Query: 173 NQID 176
++ +
Sbjct: 119 SEAE 122
>gi|317482685|ref|ZP_07941699.1| RmlD substrate binding domain-containing protein [Bifidobacterium
sp. 12_1_47BFAA]
gi|322690053|ref|YP_004209787.1| dTDP-4-dehydrorhamnose
reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Bifidobacterium longum subsp. infantis 157F]
gi|291516583|emb|CBK70199.1| dTDP-4-dehydrorhamnose reductase [Bifidobacterium longum subsp.
longum F8]
gi|316915931|gb|EFV37339.1| RmlD substrate binding domain-containing protein [Bifidobacterium
sp. 12_1_47BFAA]
gi|320461389|dbj|BAJ72009.1| dTDP-4-dehydrorhamnose
reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase
[Bifidobacterium longum subsp. infantis 157F]
Length = 483
Score = 170 bits (433), Expect = 7e-41, Method: Composition-based stats.
Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 12/179 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
NI + + D+RGWF + + + LGL D VQ+N S++ G RG+H
Sbjct: 15 NIPGLLVFDLPVHGDNRGWFKENWQRAKMMGLGLPDFGPVQNNISYNATKGVTRGIH--A 72
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + AG IF VD+R ++G + + + IY+P G + F L+
Sbjct: 73 EPWD--KYISIAAGEIFGAWVDLRPG-ESFGQVFTTRLDPS--RAIYVPRGVGNSFQALQ 127
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
T Y V +S+E V D ++I WP+ SE D + P L
Sbjct: 128 DGTVYTYLVNAHWSLEQKKTYTFVNLADPELNIQWPIP-LEESERSEADLHHPMLKDAK 185
>gi|184201350|ref|YP_001855557.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Kocuria rhizophila
DC2201]
gi|183581580|dbj|BAG30051.1| putative dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase [Kocuria
rhizophila DC2201]
Length = 326
Score = 170 bits (432), Expect = 8e-41, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 12/178 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQRP 61
I+ + ++ D+RGWF+ + GL D FVQ+N SF+ T RG+H
Sbjct: 6 IDGLLLVDVPVHGDNRGWFTDNWQRAKAVAAGLPDASFVQNNISFNGSRRTTRGIH--AE 63
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K V GRIF VD+R P +G V+ EI+ G +++P G + F TLE
Sbjct: 64 PWD--KYVSVATGRIFGACVDLREG-PGFGTVVTHEITP--GTAVFVPRGVGNAFQTLEE 118
Query: 122 NTEVIYKVTDFYSVE--HDSG-VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
T Y VTD + + + V D + I WP+ +++KD+ P L+ ++
Sbjct: 119 ATAYTYLVTDHWRADATAEYSFVNLGDPQLGIEWPVP-LAQAELADKDRAHPALDDVE 175
>gi|1197642|gb|AAC60763.1| WbcA [Yersinia enterocolitica (type O:8)]
Length = 174
Score = 170 bits (432), Expect = 8e-41, Method: Composition-based stats.
Identities = 58/169 (34%), Positives = 99/169 (58%), Gaps = 6/169 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NI+ ++++ F D RG F +T+ ++ K GL+ ++ +S S IRG+HFQ+
Sbjct: 8 LNISGCYLIESPIFSDERGEFVKTHHQEIFKNFGLEIPSAEEYYSRS-KNNVIRGMHFQQ 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P KLV C G + D+ +DIR++S TYG ++S + +N I++ G AHGF++++
Sbjct: 67 YPDDHNKLVFCPEGEVLDVFLDIRKDSNTYGQFMSFISNPHNRRSIFLAKGIAHGFLSMK 126
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
NT ++ K + +S DSG+ W S WP+ + P +S+KD+NL
Sbjct: 127 DNTLIVCKTSTVHSPSRDSGIHWN--SFGFKWPVEN---PIISDKDRNL 170
>gi|119026526|ref|YP_910371.1| fused dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase enzyme involved
in rhamnose biosynthesis [Bifidobacterium adolescentis
ATCC 15703]
gi|118766110|dbj|BAF40289.1| possible fused dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase enzyme involved
in rhamnose biosynthesis [Bifidobacterium adolescentis
ATCC 15703]
Length = 476
Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats.
Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 12/179 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
NI + + D+RGWF + + +LGL D VQ+N S++ G RG+H
Sbjct: 16 NIPGLVVFDLPVHGDNRGWFKENWQRAKQTKLGLPDFGPVQNNISYNAKKGVTRGIH--A 73
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + AG +F VD+R ++G + + + IY+P G + F LE
Sbjct: 74 EPWD--KYISIAAGSVFGAWVDLRPG-ESFGQVYTTVLDPS--KAIYVPRGVGNSFQALE 128
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
T Y V +S+E V D + I WP+ SE D + P L
Sbjct: 129 DGTVYTYLVNAHWSLEQKKTYTFVNLADPDLHIDWPIP-LEDSERSEADLHHPMLKDAK 186
>gi|23335975|ref|ZP_00121205.1| COG1091: dTDP-4-dehydrorhamnose reductase [Bifidobacterium longum
DJO10A]
gi|189440431|ref|YP_001955512.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bifidobacterium longum
DJO10A]
gi|189428866|gb|ACD99014.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bifidobacterium longum
DJO10A]
Length = 483
Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats.
Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 12/179 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
NI + + D+RGWF + + + LGL D VQ+N S++ G RG+H
Sbjct: 15 NIPGLLVFDLPVHGDNRGWFKENWQRAKMMGLGLPDFGPVQNNISYNATKGVTRGIH--A 72
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + AG IF VD+R ++G + + + IY+P G + F L+
Sbjct: 73 EPWD--KYISIAAGEIFGAWVDLRPG-ESFGQVYTTRLDPS--KAIYVPRGVGNSFQALQ 127
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
T Y V +S+E V D ++I WP+ SE D + P L
Sbjct: 128 DGTVYTYLVNAHWSLEQKKTYTFVNLADPELNIQWPIP-LEESERSEADLHHPMLKDAK 185
>gi|255029774|ref|ZP_05301725.1| hypothetical protein LmonL_13189 [Listeria monocytogenes LO28]
Length = 107
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 42/99 (42%), Positives = 63/99 (63%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+++K + F D RG+F ++Y+ K E G+ F+QDNHS S + G +RG+H+Q
Sbjct: 7 KLAGVKLVKPKVFGDHRGFFMESYNEKAFHEAGIDMKFIQDNHSLSVEAGVLRGMHYQTN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISA 100
P AQ KL+R G I+D+ VD+R+ SPTYG W +S
Sbjct: 67 PKAQTKLIRVATGAIYDVVVDMRKGSPTYGEWEGYILSE 105
>gi|317482611|ref|ZP_07941626.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bifidobacterium sp.
12_1_47BFAA]
gi|316916033|gb|EFV37440.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bifidobacterium sp.
12_1_47BFAA]
Length = 362
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 51/179 (28%), Positives = 76/179 (42%), Gaps = 12/179 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
NI + + D+RGWF + + + LGL D VQ+N SF+ G RG+H
Sbjct: 15 NIPGLLVFDLPVHGDNRGWFKENWQRAKMMGLGLPDFGPVQNNISFNATKGVTRGIH--A 72
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + AG IF VD+R ++G + + + IY+P G + F L+
Sbjct: 73 EPWD--KYISIAAGEIFGAWVDLRPG-ESFGQVFTTRLDPS--KAIYVPRGVGNSFQALQ 127
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
T Y V +S+E V D + I WP+ SE D + P L
Sbjct: 128 DGTVYTYLVNAHWSLEQKKTYTFVNLADPELGIEWPIP-LEESERSEADLHHPMLRDAK 185
>gi|302205388|gb|ADL09730.1| Putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Corynebacterium
pseudotuberculosis C231]
gi|308275626|gb|ADO25525.1| Putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Corynebacterium
pseudotuberculosis I19]
Length = 460
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 10/175 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ EDSRGWF + + L LG VQ+N SF+ + G RGLH
Sbjct: 8 IQGMMVIHLDLHEDSRGWFKENWQESKLVGLGFTGFRPVQNNISFNAEAGVTRGLH--AE 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K V G +F D+R S T+G ++ I+ +++P G A+GF LE
Sbjct: 66 PWD--KYVSVATGSVFGAWCDLREGSATFGATFTITITPET--AVFVPRGVANGFQALEA 121
Query: 122 NTEVIYKVTDFYSVE-HDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y V D ++ + H S V D +++I+WP+ ++S+KD P L
Sbjct: 122 TA-YTYLVNDHWAPDAHYSFVNLADPALNISWPIPLD-QATLSKKDTAHPPLASA 174
>gi|311742181|ref|ZP_07715991.1| dTDP-4-dehydrorhamnose reductase [Aeromicrobium marinum DSM 15272]
gi|311314674|gb|EFQ84581.1| dTDP-4-dehydrorhamnose reductase [Aeromicrobium marinum DSM 15272]
Length = 468
Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 48/180 (26%), Positives = 91/180 (50%), Gaps = 11/180 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ D+RGWF + + + ++ LGL + +Q N SF+ GT RG+H
Sbjct: 15 IPGMMLIDLPVHGDNRGWFKENWHLRKMRSLGLTEFGPIQSNVSFNHAVGTTRGIH--AE 72
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K + GR+F VD+R ++G + E+ + +++P G + + +LE
Sbjct: 73 PWD--KFISVATGRVFAAWVDLREGD-SFGQVFTTELDPST--AVFVPRGVGNSYQSLEQ 127
Query: 122 NTEVIYKVTDFYSVEHDSG-VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
+T IY V D +S + + D+++ I WP+ +S++D+ P L ++ PF+
Sbjct: 128 DTAYIYLVNDHWSPDASYTFLNLADETVAIDWPIPLD-QAELSDRDRTHPRLADVE-PFK 185
>gi|154488287|ref|ZP_02029404.1| hypothetical protein BIFADO_01861 [Bifidobacterium adolescentis
L2-32]
gi|154083438|gb|EDN82483.1| hypothetical protein BIFADO_01861 [Bifidobacterium adolescentis
L2-32]
Length = 483
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 52/179 (29%), Positives = 76/179 (42%), Gaps = 12/179 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQR 60
NI + + D+RGWF + + LGL D VQ+N SF+ G RG+H
Sbjct: 16 NIPGLVVFDLPVHGDNRGWFKENWQRAKQTALGLPDFGPVQNNISFNAKKGVTRGIH--A 73
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + AG +F VD+R ++G + + + IY+P G + F LE
Sbjct: 74 EPWD--KYISIAAGSVFGAWVDLRPGD-SFGQVYTTILDPS--KAIYVPRGVGNSFQALE 128
Query: 121 MNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
T Y V +S+E V D +DI WP+ SE D + P L
Sbjct: 129 DGTVYTYLVNAHWSLEQKKTYTFVNLADPELDIQWPIP-LEDSERSEADLHHPMLKDAK 186
>gi|148927818|ref|ZP_01811243.1| dTDP-4-dehydrorhamnose 3,5-epimerase [candidate division TM7
genomosp. GTL1]
gi|147886844|gb|EDK72389.1| dTDP-4-dehydrorhamnose 3,5-epimerase [candidate division TM7
genomosp. GTL1]
Length = 121
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
+H+Q AQ KLVR + G +FD+AVD+R++SPT+G WV +SA+N Q+++P GF HG
Sbjct: 1 MHYQIQ-QAQGKLVRVVQGEVFDVAVDLRKSSPTFGKWVGALLSADNKHQLWVPEGFGHG 59
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F+ L + E +YK TD+Y+ H+ +AW D ++ I W P VS KD
Sbjct: 60 FVVLSDSAEFLYKTTDYYAPVHERCIAWNDPTLAIDWRTSGE--PIVSAKDALGKPFLHA 117
Query: 176 D 176
+
Sbjct: 118 E 118
>gi|5305795|gb|AAD41825.1|AF147704_5 NDP-hexose 3,5- (or5-) epimerase TylCVII [Streptomyces fradiae]
Length = 197
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 4/165 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ + D RG ++ + L+ G Q NH+ + T+RG+H
Sbjct: 8 VRDAYRITPEPIPDHRGSLYESLRYETLRRATGHAIEIRQVNHTVN-RRNTLRGIHGTTV 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P Q K+V C+ G + VD+R SPT+G + A +G+ +Y+P G G++ L
Sbjct: 67 PPGQGKIVTCVRGAARTMVVDLRVGSPTFGGHDVVGQDAESGVAVYLPDGLGLGYVALAD 126
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+T + Y T Y+ + D + + W L + P SE+D
Sbjct: 127 DTCMNYLYTREYTPGMIIDIDALDPGLGLPWNLTEP--PVRSERD 169
>gi|257067486|ref|YP_003153741.1| dTDP-4-dehydrorhamnose reductase [Brachybacterium faecium DSM 4810]
gi|256558304|gb|ACU84151.1| dTDP-4-dehydrorhamnose reductase [Brachybacterium faecium DSM 4810]
Length = 479
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 12/177 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV-FVQDNHSFSFDCGTIRGLHFQRP 61
I + ++ D RGWF + + + + GL D+ VQ+N SF+ G RG+H
Sbjct: 11 IPGLLVIDLPVHGDPRGWFKENWQREKMLAAGLPDLGPVQNNISFNQTVGVTRGIH--AE 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K + GR+F VD+RR P++G EI+ + IY+P G + F TLE
Sbjct: 69 PWD--KYISVATGRVFGAWVDLRRG-PSFGATYWHEITPDI--AIYVPRGVGNAFQTLEA 123
Query: 122 NTEVIYKVTDFYSVEHD---SGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
Y V +S + + D++ I WP+ +S KD+ P L +
Sbjct: 124 PAAYTYLVNAHWSAAAQEQYTFLHLADETAAIPWPIP-LEQAELSAKDRAHPLLADV 179
>gi|224223718|gb|ACN39733.1| SibJ [Streptosporangium sibiricum]
Length = 193
Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 6/175 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ ++ L F D RG F Y L + + S + G RG+H+
Sbjct: 6 LAVDGALELTLPVFPDERGMFCPIYQDGALS---VPFPIRRSALSVN-RAGAARGIHYAP 61
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
K+V C++G D VD+R SPT+G W ++ + A+ +Y+P G HGF+ L
Sbjct: 62 GGDGPTKIVHCVSGSAIDFVVDVRVGSPTFGHWDTILLDADLPRAVYLPAGLGHGFVALT 121
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T V Y +T Y + V+ D ++ + PL +S D+ P L +
Sbjct: 122 GGTVVSYLMTTAYQAGDEQPVSLLDPALGL--PLPAAQELVMSPADRAAPTLAEA 174
>gi|331695741|ref|YP_004331980.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudonocardia dioxanivorans
CB1190]
gi|326950430|gb|AEA24127.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudonocardia dioxanivorans
CB1190]
Length = 180
Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 6/175 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF-VQDNHSFSFDCGTIRGLHFQR 60
+I+ V + F D RG F++T+ + + E G+ QD+ S S+ R
Sbjct: 7 DIDGVLLFVPTPFRDGRGLFTRTFDTAIAAEHGVDLGPRAQDSQSRSWRGTVRGM--HGR 64
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AKLVR G + D+ VD R +SPT+G + + + +Y+P G HGF L
Sbjct: 65 RGRGEAKLVRAAHGAVHDVLVDARPSSPTFGVVAAFRLDDEDFHHLYVPPGLLHGFQALT 124
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+V Y++ + D GVA D + I WPL L +S++D+ ++
Sbjct: 125 DVADVCYRIDRPHDPSEDVGVAHDDPDLAIAWPLP---LGPISDRDRAAGSWAEL 176
>gi|224418633|ref|ZP_03656639.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Helicobacter canadensis MIT
98-5491]
gi|253826822|ref|ZP_04869707.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Helicobacter canadensis MIT
98-5491]
gi|313142158|ref|ZP_07804351.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Helicobacter canadensis MIT
98-5491]
gi|253510228|gb|EES88887.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Helicobacter canadensis MIT
98-5491]
gi|313131189|gb|EFR48806.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Helicobacter canadensis MIT
98-5491]
Length = 187
Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats.
Identities = 63/179 (35%), Positives = 95/179 (53%), Gaps = 7/179 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ + + ILK F+D+RG F + +S + ++ L F + +S S G +RG+HFQ P
Sbjct: 7 DFDGLYILKRSMFKDNRGEFIKHFSEECFRQNSLDTDFKESYYSVS-KKGVLRGMHFQLP 65
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
PY KLV +G+I D+ VDIR +S T+G + + +S+ +YIP GFAHGF+ LE
Sbjct: 66 PYEHTKLVYVSSGKILDVVVDIRLHSSTFGLFFKIVLSSKKSSFLYIPKGFAHGFLCLED 125
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW----PLLDTILPSVSEKDQNLPFLNQID 176
NT V Y T YS HDSG+ + S W + +S++D + L
Sbjct: 126 NTRVHYLQTSVYSKNHDSGILYD--SFGFNWLEESSKYEVKNLIISQRDLSFESLKDFK 182
>gi|161367407|gb|ABX71133.1| Lct50 [Streptomyces rishiriensis]
Length = 161
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 2/147 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKE-LGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+++ ++ D RG F ++ LL++ LG +Q N S S T+RG+H
Sbjct: 6 LSVPGAYVITPDIHPDPRGDFFESLRVDLLEDVLGHAFRPLQVNCSTS-RRNTLRGIHSV 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P QAK V C+ G + DI VD+R SP +G + A +G +Y+P G HGF+TL
Sbjct: 65 TSPPGQAKYVTCVRGSVRDIVVDLRPGSPAFGSHAVNVLDAASGRAVYVPEGVGHGFLTL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDK 146
++ V Y + Y V D
Sbjct: 125 ADDSCVCYVLDSVYVPGTQIDVDPLDP 151
>gi|257880163|ref|ZP_05659816.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
1,230,933]
gi|257814391|gb|EEV43149.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium
1,230,933]
Length = 118
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 46/116 (39%), Positives = 70/116 (60%), Gaps = 3/116 (2%)
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
++R + G + D+ VDIR+ SPTYG W +S +N Q+ +P G+AHGF+TL N +Y
Sbjct: 1 MIRVVTGAVLDVVVDIRKGSPTYGQWDGFILSEHNHRQLLVPKGYAHGFVTLTPNVNFLY 60
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS--PFEY 181
K ++Y+ E D G+A+ D + I WP+ D +SEKD P L + ++ PF Y
Sbjct: 61 KCDNYYNAEADGGIAFDDPDLAIDWPI-DPSRAIMSEKDHRHPTLKEFEAENPFVY 115
>gi|288963060|ref|YP_003453339.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Azospirillum sp. B510]
gi|288915312|dbj|BAI76795.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Azospirillum sp. B510]
Length = 169
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 8/170 (4%)
Query: 2 NINPVRILKT-RKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
++ V + +FED RG + + Y+ +L + G+ F+QD+ S S +RGLH
Sbjct: 7 KLDGVLAIDPPTRFEDFRGEYVELYNKELYHQAGITQDFIQDDISVSS-MNVLRGLHGDA 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+ KLV + GR + + V+ SP Y W + +S N QI IP F +G + +
Sbjct: 66 KTW---KLVSALVGRFYLVVVNWDETSPQYRMWEAFTLSDRNRRQILIPPKFGNGHLVMS 122
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLP 170
YK T Y E + W DK + I WP+ P +S +D +P
Sbjct: 123 EYCVFHYKQTTTYERESQFTIHWDDKDVGIYWPVQS---PILSMRDAGVP 169
>gi|304388865|ref|ZP_07370916.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis ATCC
13091]
gi|304337182|gb|EFM03365.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis ATCC
13091]
Length = 123
Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 49/113 (43%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
Q KLVR + G +FD+AVD+R SPT+G W +SA N Q++IP GFAHGF L
Sbjct: 5 TQGKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFCVLGDAA 64
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
EV+YK TD+Y E + + W D ++ I WPL P +S KD Q +
Sbjct: 65 EVVYKCTDYYKPEAEQVLIWNDPTVGIGWPL--QTAPLLSPKDLAGKTWAQAE 115
>gi|305679681|ref|ZP_07402491.1| putative dTDP-4-dehydrorhamnose reductase [Corynebacterium
matruchotii ATCC 14266]
gi|305660301|gb|EFM49798.1| putative dTDP-4-dehydrorhamnose reductase [Corynebacterium
matruchotii ATCC 14266]
Length = 482
Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats.
Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 15/170 (8%)
Query: 15 EDSRGWFSQTYSSK------LLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKL 68
D+RGWF + + + L + + VQ+N SF+ G RGLH + K
Sbjct: 3 PDNRGWFKENWQREKIAAIPELSQACREFRPVQNNISFNAQPGVTRGLHAE----PWNKF 58
Query: 69 VRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128
V G +F + D+R +SPT+G S I+ +++P G A+GF LE + Y
Sbjct: 59 VTIAQGEVFGVWCDLRADSPTFGKVFSTRITTEQ--AVFVPRGVANGFQALEP-SIYTYL 115
Query: 129 VTDFYSVE-HDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
V +S + H S V D ++ I WP+ +S D+ P L +
Sbjct: 116 VDAHWSPQAHYSHVNLADPALGICWPIPLD-KAEISAADRTHPLLADATA 164
>gi|227502493|ref|ZP_03932542.1| dTDP-4-keto-6-deoxyglucose-3, 5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
accolens ATCC 49725]
gi|227076766|gb|EEI14729.1| dTDP-4-keto-6-deoxyglucose-3, 5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
accolens ATCC 49725]
Length = 461
Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats.
Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 19/177 (10%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ---DVFVQDNHSFSFDCGTIRGLHFQ 59
I +RI++ D+RGWF + + + L E+ + VQ+N S++ G RGLH
Sbjct: 8 IEGLRIIELDVHGDNRGWFKENWQREKLGEVAPELASFQPVQNNISYNRT-GATRGLH-- 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P+ KLV G+IF D+R S T+G V+ E+ +++P G A+GF L
Sbjct: 65 AEPWD--KLVSVANGKIFGAWCDLREGSATFGEIVTHEVGPET--AVFVPRGVANGFQAL 120
Query: 120 EMNTEVIYKVTDFYSVEHDS-GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E T Y V + +S E G+ + WPL VSEKD++LP L +
Sbjct: 121 EE-TSYSYLVNEHWSPEARYTGINLD----AVEWPLEPR---EVSEKDKHLPALADV 169
>gi|306835067|ref|ZP_07468110.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
accolens ATCC 49726]
gi|304569048|gb|EFM44570.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
accolens ATCC 49726]
Length = 461
Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats.
Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 19/177 (10%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ---DVFVQDNHSFSFDCGTIRGLHFQ 59
I +RI++ D+RGWF + + + L E+ + VQ+N S++ G RGLH
Sbjct: 8 IEGLRIIELDVHGDNRGWFKENWQREKLGEVAPELASFQPVQNNISYNRT-GATRGLH-- 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P+ KLV G+IF D+R S T+G V+ E+ +++P G A+GF L
Sbjct: 65 AEPWD--KLVSVANGKIFGAWCDLREGSATFGEIVTHEVGPET--AVFVPRGVANGFQAL 120
Query: 120 EMNTEVIYKVTDFYSVEHDS-GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E T Y V + +S E G+ + WPL VSEKD++LP L +
Sbjct: 121 EE-TSYSYLVNEHWSPEARYTGINLD----AVEWPLEPR---EVSEKDKHLPALADV 169
>gi|302335388|ref|YP_003800595.1| dTDP-4-dehydrorhamnose reductase [Olsenella uli DSM 7084]
gi|301319228|gb|ADK67715.1| dTDP-4-dehydrorhamnose reductase [Olsenella uli DSM 7084]
Length = 481
Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 12/178 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQD-VFVQDNHSFSFDCGTIRGLHFQR 60
I +R+ D RGWF + + + GL D VQ+N SF+ G RG+H
Sbjct: 13 EIAGLRVFDLCVHGDDRGWFKENWQQAKMSSCGLPDFHPVQNNISFNAQRGVTRGIH--A 70
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P+ K + +G IF + VD+R +G S I + +++P G + F LE
Sbjct: 71 EPWD--KYISVASGSIFGVWVDLRAG-EGFGRVFSCRIDPS--KAVFVPRGVGNAFQALE 125
Query: 121 MNTEVIYKVTDFYS---VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T Y V +S E + V D+ + I WP+ + +S+ D++ P L +
Sbjct: 126 DGTVYTYLVNAHWSQELKESYTFVNLADEQLAIEWPIPLSEC-ELSQADRDHPALRDV 182
>gi|255018157|ref|ZP_05290283.1| hypothetical protein LmonF_11371 [Listeria monocytogenes FSL
F2-515]
Length = 101
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 41/95 (43%), Positives = 61/95 (64%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+++K + F D RG+F ++Y+ K E G+ F+QDNHS S + G +RG+H+Q
Sbjct: 7 KLAGVKLVKPKVFGDHRGFFMESYNEKAFHEAGIDMKFIQDNHSLSVEAGVLRGMHYQTN 66
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSL 96
P AQ KL+R G I+D+ VD+R+ SPTYG W
Sbjct: 67 PKAQTKLIRVATGAIYDVVVDMRKGSPTYGEWEGY 101
>gi|260437449|ref|ZP_05791265.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Butyrivibrio
crossotus DSM 2876]
gi|292810081|gb|EFF69286.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Butyrivibrio
crossotus DSM 2876]
Length = 191
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 9/185 (4%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ + + D RG + Y+ + G++ + ++ + G IR LHFQ
Sbjct: 10 LPLKGSYKITPFLATDERGGLLKDYNVDIFNSNGIKHNLKETFYTIT-RKGVIRALHFQL 68
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
QAKL+RCI+G ++ + D+R+ SPTY W+ ++ +N +Y+P F G+ +E
Sbjct: 69 I-KPQAKLIRCISGHVYAVICDLRKESPTYKKWLPFHLTGDNMTMLYVPGEFGLGYFVIE 127
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL------DTILPSVSEKDQNLPFLNQ 174
V YK + + E DSG+ W DK + I WP+ +S+KD NL +
Sbjct: 128 D-AVVSYKCDEVFYGEGDSGIMWNDKDLAIEWPIELIEGVTSEDDLIISDKDSNLMSFKE 186
Query: 175 IDSPF 179
D +
Sbjct: 187 YDERY 191
>gi|159232422|emb|CAM96606.1| probable NDP-hexose epimerase [Streptomyces ambofaciens]
Length = 206
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 2/164 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V + D RG F + L+ V V+ H +RGLH P
Sbjct: 8 VPDVFRIDPEPLPDHRGRFYEAVRRGPLEAAVGHSVEVRQVHCTVSGRNVLRGLHATTLP 67
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
QAK++ C+ G + VD+R SP +G + ++ A +G +Y+P G G++ L +
Sbjct: 68 PGQAKILTCVRGAALTMVVDMRVGSPGFGRYEAVRQDAPSGTALYLPDGIGLGYVALADD 127
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
T + Y T+ Y V D + + W L P S +D
Sbjct: 128 TCMNYLCTEEYVPGMVIDVDALDPELGLPWGLTGD--PVRSARD 169
>gi|330991366|ref|ZP_08315317.1| dTDP-4-dehydrorhamnose 3-5-epimerase [Gluconacetobacter sp. SXCC-1]
gi|329761385|gb|EGG77878.1| dTDP-4-dehydrorhamnose 3-5-epimerase [Gluconacetobacter sp. SXCC-1]
Length = 204
Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 52/183 (28%), Positives = 93/183 (50%), Gaps = 5/183 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGL--QDVFVQDNHSFSFDCGTIRGLHF 58
+ I + +L RG + + +L G+ + F++ + + +D +RGL+
Sbjct: 24 LPIEGLLLLVPTIRT-GRGSTCRAACT-VLSHAGIAMTEYFMRSSRTERYDRHVVRGLYC 81
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
Q PP+AQ +L++C G ++ + VD+R S ++G W + +SA N Q++IP GF HG
Sbjct: 82 QVPPHAQGRLLQCGRGAVWMVGVDVRTGSRSFGQWAGVTLSAENARQLWIPPGFLHGLCC 141
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSP 178
L+ NTEV + T + + W D+++ I WP+ D +S D + P + +
Sbjct: 142 LDGNTEVTCRQTRPDARASTRTIRWNDETLGIEWPVRDQ-QAVLSPADGHAPSFSNVIDW 200
Query: 179 FEY 181
F Y
Sbjct: 201 FPY 203
>gi|333023925|ref|ZP_08451989.1| PlaA8 [Streptomyces sp. Tu6071]
gi|81250718|gb|ABB69763.1| PlaA8 [Streptomyces sp. Tu6071]
gi|332743777|gb|EGJ74218.1| PlaA8 [Streptomyces sp. Tu6071]
Length = 191
Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 4/178 (2%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYS-SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
M I + K+ D RG F + + +L + G Q N S S TIRG+H
Sbjct: 6 MAIAGAFRIIPDKYHDCRGCFFEAFRIEELRRATGFPFQVRQGNVSVSRRS-TIRGVHGT 64
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+AKL+ C G + D+ VD+R SP +G + + ++ ++G I++ G H + L
Sbjct: 65 GGDSGEAKLISCARGAVLDVVVDLRVGSPVFGTFEAAPLTEDSGELIFLVPGLGHAYQAL 124
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+T + Y + + + D+ + + W L + P +S+KD+ P L Q +
Sbjct: 125 TDDTRITYLCAERFVPGSQIDINPLDQELALPWDLSEE--PVISDKDRAAPGLRQAAA 180
>gi|255324210|ref|ZP_05365332.1| dtdp-4-dehydrorhamnose 3,5-epimerase, dtdp-dehydrorhamnose
reductase [Corynebacterium tuberculostearicum SK141]
gi|255298726|gb|EET78021.1| dtdp-4-dehydrorhamnose 3,5-epimerase, dtdp-dehydrorhamnose
reductase [Corynebacterium tuberculostearicum SK141]
Length = 451
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 56/179 (31%), Positives = 82/179 (45%), Gaps = 23/179 (12%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLH 57
I + I+ D+RGWF + + + GL VQ+N SF+ G RGLH
Sbjct: 8 IPGLLIIDLDVHGDNRGWFKENWQREKFT--GLAPELASFQPVQNNISFN-HAGATRGLH 64
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ KLV GRIF D+R S ++G V+ E+ +++P G A+GF
Sbjct: 65 --AEPWD--KLVSVAQGRIFGAWCDLREGSESFGEVVTHEVGPET--AVFVPRGVANGFQ 118
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDI-TWPLLDTILPSVSEKDQNLPFLNQI 175
LE T Y V + +S E + +++I WPL T +SEKD P L +
Sbjct: 119 ALEE-TSYCYLVNEHWSAEA----RYAAVNLNIVDWPLEPT---EISEKDTQHPALEDV 169
>gi|237756976|ref|ZP_04585437.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237690866|gb|EEP60013.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 108
Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats.
Identities = 52/101 (51%), Positives = 69/101 (68%), Gaps = 1/101 (0%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+I+K + F+D+RG+F + Y ++ GL FVQDNHS S G +RGLHFQ
Sbjct: 9 EIPEVKIIKPKVFKDARGFFLEFYKKSDFEKAGLNVEFVQDNHSKSVK-GVLRGLHFQEK 67
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANN 102
PY Q KLVRCI G+IFD+AVDIR +SP + WV++E+S N
Sbjct: 68 PYEQGKLVRCIKGKIFDVAVDIRPDSPYFKKWVAVELSEEN 108
>gi|237742784|ref|ZP_04573265.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 4_1_13]
gi|229430432|gb|EEO40644.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 4_1_13]
Length = 131
Score = 160 bits (407), Expect = 7e-38, Method: Composition-based stats.
Identities = 49/125 (39%), Positives = 77/125 (61%), Gaps = 4/125 (3%)
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
+HFQ+ Y+QAKL+ + G I DI VD+R+NS T+G + S+E++ N ++IP FAHG
Sbjct: 1 MHFQKGEYSQAKLISILRGSILDIVVDLRKNSETFGKYFSIELNEKNKKVLFIPKNFAHG 60
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPF 171
F+TLE NTE+ YK +FY+ + ++G+ W D ++I W L + +SEKD+
Sbjct: 61 FLTLEDNTEIFYKCDNFYNPQSEAGIIWDDSDLNIEWNLKKYKINESELIISEKDKKNTS 120
Query: 172 LNQID 176
+
Sbjct: 121 FKEYK 125
>gi|322392751|ref|ZP_08066210.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus peroris ATCC
700780]
gi|321144389|gb|EFX39791.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus peroris ATCC
700780]
Length = 197
Score = 160 bits (407), Expect = 8e-38, Method: Composition-based stats.
Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGLLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFRDGKLQNNISFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGAWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E S V + D ++ I W + VSE D+N P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKSKYVFVNYADPALGIEW--ENLAEAEVSEADKNHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|270293359|ref|ZP_06199568.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
sp. M143]
gi|270278208|gb|EFA24056.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
sp. M143]
Length = 198
Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGLLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G EI A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADNGKVLGSWVDLREG-ETFGNVYQTEIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D + I W + VSE D++ P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYSDPELGIEW--ENLEEAEVSEADKHHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|3907611|gb|AAC78675.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase Cps19aM [Streptococcus
pneumoniae]
gi|68643373|emb|CAI33635.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
Length = 198
Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats.
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGLLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAAGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G EI A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADDGKVLGSWVDLREG-ETFGNVYQTEIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+ I W + VSE D+N P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPSLGIEW--ENIAEAEVSEADKNHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|311741017|ref|ZP_07714842.1| dTDP-4-keto-6-deoxyglucose-3, 5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311303819|gb|EFQ79897.1| dTDP-4-keto-6-deoxyglucose-3, 5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 451
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 23/179 (12%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLH 57
I + I+ D+RGWF + + + GL VQ+N SF+ G RGLH
Sbjct: 8 IPGLLIIDLDMHGDNRGWFKENWQREKFT--GLAPELASFQPVQNNISFN-HAGATRGLH 64
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ KLV G+IF D+R S ++G V+ E+ +++P G A+GF
Sbjct: 65 --AEPWD--KLVSVAQGKIFGAWCDLREGSESFGEVVTHEVGPET--AVFVPRGVANGFQ 118
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDI-TWPLLDTILPSVSEKDQNLPFLNQI 175
LE T Y V + +S E + +++I WPL T +SEKD+ P L ++
Sbjct: 119 ALEE-TSYCYLVNEHWSAEA----RYAAVNLNIVDWPLEPT---EISEKDKQHPDLAEV 169
>gi|257882807|ref|ZP_05662460.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Enterococcus faecium
1,231,502]
gi|257818465|gb|EEV45793.1| dTDP-6-deoxy-D-glucose-3,5 epimerase [Enterococcus faecium
1,231,502]
Length = 171
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 3/173 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M + V++ KF D RG+ + ++ L +G++ Q N FS + T+RGLH+Q
Sbjct: 1 MVVVMVKVFDIIKFSDFRGYTAVALDNETLFSIGIEFHIKQINQGFSHNKYTMRGLHYQS 60
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AQ K+V C+ G I +IA+DIR+ S TYGC +S +NG YIP G+AHG++T+E
Sbjct: 61 GEHAQGKIVMCLHGEIMNIALDIRQGSSTYGCVYVNTLSESNGKCAYIPRGYAHGYLTME 120
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
NT V + V + ++ +++ +S+DI WP+ +SEKD+N L+
Sbjct: 121 DNTLVQWCVDNDFNSNAAKCISY--ESVDIEWPVSRQCF-VISEKDKNGERLS 170
>gi|300728519|ref|ZP_07061878.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella bryantii B14]
gi|299774237|gb|EFI70870.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella bryantii B14]
Length = 122
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 48/113 (42%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
+VRC+ G + D+AVDIR+ SPTYG V++E++ +N Q ++P GFAHGF L Y
Sbjct: 1 MVRCVKGAVLDVAVDIRKGSPTYGQHVAVELTEDNHRQFFVPRGFAHGFAVLSETAVFQY 60
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFE 180
K +FY E D G++ D S+ I W + D +SEKD L DSPF+
Sbjct: 61 KCDNFYHPEADGGISIVDDSLGIDWKI-DAEKALLSEKDTKHVLLEDFDSPFD 112
>gi|149006111|ref|ZP_01829840.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Streptococcus
pneumoniae SP18-BS74]
gi|307126573|ref|YP_003878604.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
670-6B]
gi|18376692|gb|AAL68416.1|AF246897_13 dTDP 4-keto 6-deoxyglucose 3,5-epimerase [Streptococcus pneumoniae]
gi|147762467|gb|EDK69428.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Streptococcus
pneumoniae SP18-BS74]
gi|306483635|gb|ADM90504.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
670-6B]
gi|332076800|gb|EGI87262.1| dTDP-4-dehydrorhamnose 3,5-epimerase family protein [Streptococcus
pneumoniae GA17545]
Length = 198
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + ++ LG + F Q+N SFS +RGLH
Sbjct: 18 IPGLLEFDIPVHGDNRGWFKENFQKEKMEPLGFPESFFAAGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADDGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+ I W + VSE D+N P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPSLGIEW--ENIAEAEVSEADKNHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|48474180|dbj|BAD22650.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus mitis]
Length = 197
Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGLLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G EI A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNVYQTEIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D ++ I W + VSE D++ P L
Sbjct: 131 VLSDTVAYSYLVNDYWALELKPKYAFVNYADPALGIEW--ENLEAAEVSEADKHHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|312862914|ref|ZP_07723154.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus
vestibularis F0396]
gi|311101774|gb|EFQ59977.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus
vestibularis F0396]
Length = 197
Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 53/182 (29%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG F Q+N SFS +RGLH
Sbjct: 18 IPGLLEFDIPVHGDNRGWFKENFQKEKMLPLGFPKSFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADEGKVLGTWVDLREG-ETFGKTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+DI W + VSE D+N P L
Sbjct: 131 VLSDKVAYSYLVNDYWALELKPKYAFVNYADPSLDIKW--ENLEEAEVSEADKNHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|322374910|ref|ZP_08049424.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
sp. C300]
gi|321280410|gb|EFX57449.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
sp. C300]
Length = 197
Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGLLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G EI A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNVYQTEIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D ++ I W + VSE D++ P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPALGIQW--ENLAEAEVSEADKHHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|85717222|ref|ZP_01048178.1| strX protein [Nitrobacter sp. Nb-311A]
gi|85695936|gb|EAQ33838.1| strX protein [Nitrobacter sp. Nb-311A]
Length = 128
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 49/120 (40%), Positives = 73/120 (60%), Gaps = 3/120 (2%)
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
+H+Q PP A+ K+VRCI+G ++DI VD+R +SPT+ W +E+S N L +++P GFAHG
Sbjct: 1 MHYQLPPAAEIKIVRCISGALYDIIVDLRPDSPTFSRWFGIELSEENRLMLFVPRGFAHG 60
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
FMTL NTE Y V+ FY + G+ + D + WP +S+KD+ P +
Sbjct: 61 FMTLADNTEAFYLVSAFYEPAQERGLRFDDPHFALKWPRTPVD---ISDKDRAWPSFDAA 117
>gi|261208595|ref|ZP_05923032.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289567166|ref|ZP_06447557.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|260077097|gb|EEW64817.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289161052|gb|EFD08961.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
Length = 171
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 63/173 (36%), Positives = 102/173 (58%), Gaps = 3/173 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M + V++ KF D RG+ + ++ L +G++ Q N FS + T+RGLH+Q
Sbjct: 1 MVVVMVKVFDIIKFSDFRGYTAVALDNETLFSIGIEFHIKQINQGFSHNKYTMRGLHYQS 60
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+AQ K+V C+ G I +IA+DIR+ S TYGC +S +NG YIP G+AHG++T+E
Sbjct: 61 GEHAQGKIVMCLHGEIMNIALDIRQGSSTYGCVYVNTLSESNGKCAYIPRGYAHGYLTME 120
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
NT V + V + ++ +++ +S+DI WP+ +SEKD+N+ L+
Sbjct: 121 DNTLVQWCVDNDFNSNAAKCISY--ESVDIEWPVSRQCF-VISEKDKNVERLS 170
>gi|34762800|ref|ZP_00143787.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|27887551|gb|EAA24634.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 131
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 48/125 (38%), Positives = 77/125 (61%), Gaps = 4/125 (3%)
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
+HFQ+ Y+QAKL+ + G I DI +D+R+NS T+G + S+E++ N ++IP FAHG
Sbjct: 1 MHFQKREYSQAKLISILRGSILDIVIDLRKNSETFGKYFSIELNEKNKKVLFIPKNFAHG 60
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPF 171
F+TLE NTE+ YK +FY+ + ++G+ W D ++I W L + +SEKD+
Sbjct: 61 FLTLEDNTEIFYKCDNFYNPQSEAGIIWNDSDLNIEWNLKKYKINESELIISEKDKKNMS 120
Query: 172 LNQID 176
+
Sbjct: 121 FKEYK 125
>gi|168494599|ref|ZP_02718742.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
CDC3059-06]
gi|169833448|ref|YP_001693877.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
Hungary19A-6]
gi|298255292|ref|ZP_06978878.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae str.
Canada MDR_19A]
gi|298502160|ref|YP_003724100.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
TCH8431/19A]
gi|168995950|gb|ACA36562.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
Hungary19A-6]
gi|183575494|gb|EDT96022.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
CDC3059-06]
gi|298237755|gb|ADI68886.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
TCH8431/19A]
gi|332203522|gb|EGJ17589.1| dTDP-4-dehydrorhamnose 3,5-epimerase family protein [Streptococcus
pneumoniae GA47368]
Length = 197
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGLLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAAGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G EI A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADDGKVLGSWVDLREG-ETFGNVYQTEIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D ++ I W + VSE D++ P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPALGIEW--ENLAEAEVSEADKHHPLLRD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|6002931|gb|AAF00208.1|AF164960_4 epimerase [Streptomyces fradiae]
Length = 202
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 7/177 (3%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M+I ++ + D RG F + L + +G+ Q N+S S T+RG+H
Sbjct: 1 MSIPGAFLITPDQLSDERGAFYELRCDMLERAVGVPFQPQQINYSVS-KRHTLRGIHSVS 59
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P QAKLV C+ G + DI VD+R SP +G E+ A +G +Y+P + +
Sbjct: 60 IPPGQAKLVTCVRGALRDIVVDLRIGSPAFGAHQVTELDAVSGRSVYVPEVWGTD-SSRS 118
Query: 121 MNTEVIYKVTDF--YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T V + Y + D +D+ W P +SEKD L +
Sbjct: 119 PTTPVS-ATSSPSTYVPGTQIDINPLDPDLDLPW--DCPQEPLISEKDAKASSLAEA 172
>gi|121310080|dbj|BAF44345.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus oralis]
Length = 197
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGLLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G EI A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNVYQTEIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D ++ I W + VSE D++ P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPALGIQW--ENLAEAEVSEADKHHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|110349044|gb|ABG73088.1| RfbC [Rhizobium leguminosarum bv. trifolii TA1]
Length = 142
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 54/122 (44%), Positives = 75/122 (61%), Gaps = 6/122 (4%)
Query: 77 FDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVE 136
D+ VDIR SP++G W+S E+S NG+Q+++P GFAHGF TLE N+ + YKVT YS +
Sbjct: 1 MDVVVDIREGSPSFGKWLSQELSPENGMQLWVPAGFAHGFATLEPNSVISYKVTAPYSPQ 60
Query: 137 HDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYDGLPLLSLNMERDLL 196
HD G+AW D +I I WP + + S S+KD+ LP L + + F P+ N D
Sbjct: 61 HDRGIAWNDPAIGIRWPFDERDMVS-SDKDKTLPRLTDLQAIF-----PIQHSNPRIDRR 114
Query: 197 CV 198
C
Sbjct: 115 CA 116
>gi|16082676|gb|AAL14254.1| NDP-4-keto-6-deoxyhexose 5-epimerase [Streptomyces venezuelae ATCC
10712]
Length = 197
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 54/192 (28%), Positives = 81/192 (42%), Gaps = 36/192 (18%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFV-QDNHSFSFDCGTIRGLHF 58
+ I F+DSRG F+ Y + +LG V Q +H+ S GT+RG+HF
Sbjct: 6 LAIEGAFAFTPPVFKDSRGLFASPYQGDVFAGQLGRPLFQVNQVSHNLSAR-GTLRGVHF 64
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
P AK V C GR+ D +D+R SPT+G WV E+ A +Y+P G H F++
Sbjct: 65 TATPPGMAKYVYCPYGRLRDFLIDLRVGSPTFGQWVMNELDAETSRALYVPVGVGHAFVS 124
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL---------------DTILPSVS 163
L+ ++ +Y ++ YS WP D + P
Sbjct: 125 LQDDSMCVYVMSQGYSPPT-------------NWPCTRSTRRSDLPAGRRRADPVRP--- 168
Query: 164 EKDQNLPFLNQI 175
D+ P L +
Sbjct: 169 --DKIAPTLAEA 178
>gi|158312617|ref|YP_001505125.1| dTDP-4-dehydrorhamnose 35-epimerase related [Frankia sp. EAN1pec]
gi|158108022|gb|ABW10219.1| dTDP-4-dehydrorhamnose 35-epimerase related [Frankia sp. EAN1pec]
Length = 204
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 13/179 (7%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHFQ 59
I + + ED RGWF + + L + G+ F VQ++ S++ G RG H
Sbjct: 15 EIPGLFVFDVTSIEDERGWFQEKFHHAKLVDAGIPASFRVVQNSLSYNKKLGVTRGFH-- 72
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P+ K + + GR+F VD+R ++G V++E+ + +++P G A+ + T+
Sbjct: 73 AEPWD--KYISVVKGRVFCAYVDLRAG-KSFGTVVTVEL--DRNRAVFLPQGVANSYQTI 127
Query: 120 EMNTEVIYKVTDFYSVEHDSG---VAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
E +T +Y V + +S + V D + + WP+ +S++DQ+ P L +
Sbjct: 128 EDDTYYLYSVNEHWSADRYDSYVFVNLADPVLGVQWPVP-LREAVISDRDQHHPSLADV 185
>gi|256846110|ref|ZP_05551568.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 3_1_36A2]
gi|294784762|ref|ZP_06750050.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 3_1_27]
gi|256719669|gb|EEU33224.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 3_1_36A2]
gi|294486476|gb|EFG33838.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. 3_1_27]
Length = 131
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 48/125 (38%), Positives = 77/125 (61%), Gaps = 4/125 (3%)
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
+HFQ+ Y+QAKL+ + G I DI VD+R++S T+G + S+E++ N ++IP FAHG
Sbjct: 1 MHFQKREYSQAKLISILRGSILDIVVDLRKDSETFGKYFSIELNEKNKKVLFIPKNFAHG 60
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPF 171
F+TLE NTE+ YK +FY+ + ++G+ W D ++I W L + +SEKD+
Sbjct: 61 FLTLEDNTEIFYKCDNFYNPQSEAGIIWDDSDLNIEWNLKKYKINKGKLIISEKDKKNMS 120
Query: 172 LNQID 176
+
Sbjct: 121 FKEYK 125
>gi|84683922|ref|ZP_01011824.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Maritimibacter alkaliphilus
HTCC2654]
gi|84667675|gb|EAQ14143.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodobacterales bacterium
HTCC2654]
Length = 193
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 52/174 (29%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLK-ELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I + L D RG+F +T+ L+ E+G VF Q NHS S T+RG F+
Sbjct: 22 IKGLWRLIPEPAGDERGFFVETFRQSLIASEMGRPYVFAQSNHSRSV-ARTLRG--FRTE 78
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNG--LQIYIPTGFAHGFMTL 119
P+ +A V G + VD R +SPTY + I G +I + G A+ F L
Sbjct: 79 PWDKAIYVT--RGTALVVVVDPRPDSPTYREHETFLIGDAPGDRHRIVVSRGLANAFYCL 136
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
+ + V++ Y G W + I WP P +S+ D NLP +
Sbjct: 137 TD-VDYVNDVSEEYRPTGRRGFHWSAPGLGIDWP---DTTPILSDADANLPSFD 186
>gi|55821250|ref|YP_139692.1| dTDP-4-keto-L-rhamnose reductase [Streptococcus thermophilus LMG
18311]
gi|55823162|ref|YP_141603.1| dTDP-4-keto-L-rhamnose reductase [Streptococcus thermophilus
CNRZ1066]
gi|116627989|ref|YP_820608.1| dTDP-4-keto-L-rhamnose reductase [Streptococcus thermophilus LMD-9]
gi|55737235|gb|AAV60877.1| dTDP-4-keto-L-rhamnose reductase [Streptococcus thermophilus LMG
18311]
gi|55739147|gb|AAV62788.1| dTDP-4-keto-L-rhamnose reductase [Streptococcus thermophilus
CNRZ1066]
gi|116101266|gb|ABJ66412.1| dTDP-4-dehydrorhamnose 3,5-epimerase or related enzyme
[Streptococcus thermophilus LMD-9]
gi|312278578|gb|ADQ63235.1| dTDP-4-dehydrorhamnose 3,5-epimerase enzyme-like protein
[Streptococcus thermophilus ND03]
Length = 197
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 54/182 (29%), Positives = 82/182 (45%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGLLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFTEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADEGKVLGAWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+DI W + VSE D+N PFL
Sbjct: 131 VLSDKVAYSYLVNDYWALELKPKYAFVNYADPSLDIEW--ENLEEAEVSEADKNHPFLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|4406250|gb|AAD19914.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus pneumoniae]
Length = 197
Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGLLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAAGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G EI A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADDGKVLGSWVDLREG-ETFGNVYQTEIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D ++ I W + VSE D++ P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPALGIEW--ENLPEAEVSEADKHHPLLRD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|227549713|ref|ZP_03979762.1| dTDP-4-keto-6-deoxyglucose-3, 5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
lipophiloflavum DSM 44291]
gi|227078209|gb|EEI16172.1| dTDP-4-keto-6-deoxyglucose-3, 5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
lipophiloflavum DSM 44291]
Length = 440
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 76/175 (43%), Gaps = 19/175 (10%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ + I D+RGWF + +S G + VQ+N SF+ G RG+H P
Sbjct: 6 IDGLEIHPLDVHADNRGWFKENWS-------GQRLRPVQNNISFNARVGATRGMH--AEP 56
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ K V GR+F VD+R S T+ +EI + +++P G A+GF LE
Sbjct: 57 WD--KWVSVATGRVFAAWVDLREGSETFATKFGVEIGPDT--AVFVPRGVANGFQALEDA 112
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
T Y V Y+ +I WPL T +SE DQ P L +
Sbjct: 113 TTYTYLVNARYNPNGAYAY---CSYREIDWPLEPT---ELSEADQKHPPLADAPT 161
>gi|291539460|emb|CBL12571.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Roseburia
intestinalis XB6B4]
Length = 181
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 61/173 (35%), Positives = 89/173 (51%), Gaps = 15/173 (8%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I FED RG+ S Y + Q N +S + T+RGLHFQ +AQ
Sbjct: 17 VFI--PPAFEDFRGYLSVPYDRDV------PFQVCQINQGYSREAFTLRGLHFQMGEHAQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AK+V C+ G IF++AVD+R +G S +S N +YIP GFAHG++TLE +T +
Sbjct: 69 AKMVSCLHGSIFNVAVDLRPG-KCFGYSYSEVLSFENRKMMYIPKGFAHGYLTLEDDTLM 127
Query: 126 IYKVTDFYSVEHDSGVAWQDKSI---DITWPLLDTILPSVSEKDQNLPFLNQI 175
+ V + E V + D + WP + I +SEKD+N +L ++
Sbjct: 128 QWCVDQDFCGETAQAVRYDDPDLVWKGEAWPKGEYI---ISEKDKNAMWLGEL 177
>gi|293364790|ref|ZP_06611507.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus oralis ATCC
35037]
gi|307703039|ref|ZP_07639986.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus oralis ATCC
35037]
gi|291316240|gb|EFE56676.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus oralis ATCC
35037]
gi|307623432|gb|EFO02422.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus oralis ATCC
35037]
Length = 197
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G EI A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNVYQTEIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D ++ I W + VSE D++ P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPALGIQW--ENLAEAEVSEADKHHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|68643965|emb|CAI34132.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643995|emb|CAI34158.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
Length = 198
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGKTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+ I W + VSE D++ P L
Sbjct: 131 VLSDTASYSYLVNDYWALELKPKYAFVNYADPSLGIEW--ENLEEADVSEADKHHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|322516602|ref|ZP_08069516.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus vestibularis
ATCC 49124]
gi|322124872|gb|EFX96296.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus vestibularis
ATCC 49124]
Length = 197
Score = 157 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGLLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADEGKVLGTWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+DI W + VSE D+N P L
Sbjct: 131 VLSDKVAYSYLVNDYWALELKPKYAFVNYADPSLDIKW--ENLEEAEVSEADKNHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|307707842|ref|ZP_07644319.1| dTDP-4-dehydrorhamnose 3,5-epimerase subfamily, putative
[Streptococcus mitis NCTC 12261]
gi|307616102|gb|EFN95298.1| dTDP-4-dehydrorhamnose 3,5-epimerase subfamily, putative
[Streptococcus mitis NCTC 12261]
Length = 450
Score = 157 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 14/179 (7%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV----QDNHSFSFDCGTIRGLH 57
I + + ++ D RG+F + + K L G+ + F Q+N S S G IRG+H
Sbjct: 10 QIQGLLVFESPLHHDERGYFLENWRKKDLLANGVPESFFHHKLQNNVSVS-KQGVIRGMH 68
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
Q KL+ G I +D+R +SPTY I G +++P G A+G
Sbjct: 69 CQ----GYEKLMTVAYGTFKMIFIDLRIDSPTYKSVD--VIDVQPGRAVFVPGGVANGAQ 122
Query: 118 TLEMNTEVIYKVTDFYSVE-HDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+L N + Y V D+Y + G+ DK +++W + P +SEKDQ ++
Sbjct: 123 SLVNNGILNYLVADYYDPHKNYLGITPLDKDANLSW--DSLLKPIISEKDQAAKSFKEV 179
>gi|256371350|ref|YP_003109174.1| dTDP-4-dehydrorhamnose 35-epimerase related [Acidimicrobium
ferrooxidans DSM 10331]
gi|256007934|gb|ACU53501.1| dTDP-4-dehydrorhamnose 35-epimerase related [Acidimicrobium
ferrooxidans DSM 10331]
Length = 180
Score = 157 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 11/174 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V +++ D+RG F +TY L VQ + S G++ G+H+
Sbjct: 5 EIADVIVIRPTVHADARGAFQETYRRSWFP---LGREMVQGSRSDKV-AGSLVGMHYHL- 59
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
QA + G + D R S T G SL + + + ++IP G AHGF L
Sbjct: 60 --HQADYWYVVRGTAQVLLYDFRHGSRTEGTTWSLLMGDEDPIGLFIPPGVAHGFAALTD 117
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T + Y V +Y+ + + G+ W D + W L D P +SE+DQ P + Q+
Sbjct: 118 LT-LTYLVDGYYNPDDELGLRWNDPTFHGLWQLDD---PVISERDQTNPLIAQV 167
>gi|291534898|emb|CBL08010.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Roseburia
intestinalis M50/1]
Length = 175
Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 13/171 (7%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
+ FED RG+ S Y + Q N +S + T+RGLHFQ +AQAK
Sbjct: 11 VFIPPAFEDFRGYLSVPYDRDV------PFQVCQINQGYSREAFTLRGLHFQMGEHAQAK 64
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
+V C+ G IF++AVD+R +G S +S N +YIP GFAHG++TLE +T + +
Sbjct: 65 MVSCLHGSIFNVAVDLRPG-KCFGYSYSEVLSFENRKMMYIPKGFAHGYLTLEDDTLMQW 123
Query: 128 KVTDFYSVEHDSGVAWQDKSI---DITWPLLDTILPSVSEKDQNLPFLNQI 175
V + E V + D + WP + I +SEKD+N +L ++
Sbjct: 124 CVDQDFCGETAQAVRYDDPDLVWKGEAWPKGEYI---ISEKDKNAMWLGEL 171
>gi|148988116|ref|ZP_01819579.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Streptococcus
pneumoniae SP6-BS73]
gi|13377431|gb|AAK20692.1|AF316640_12 RmlC [Streptococcus pneumoniae]
gi|68642408|emb|CAI32826.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643603|emb|CAI33826.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643631|emb|CAI33849.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643659|emb|CAI33871.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643687|emb|CAI33896.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68644530|emb|CAI34597.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|147926580|gb|EDK77653.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Streptococcus
pneumoniae SP6-BS73]
Length = 197
Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+ I W + VSE D+N P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPSLGIEW--ENIAEAEVSEADKNHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|18376704|gb|AAL68427.1| dTDP 4-keto 6-deoxyglucose 3,5-epimerase [Streptococcus pneumoniae]
gi|68643747|emb|CAI33949.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|149929318|gb|ABR37232.1| RmlC [Streptococcus pneumoniae]
gi|312176762|gb|ADQ39189.1| RmlC [Streptococcus pneumoniae]
Length = 198
Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+ I W + VSE D+N P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPSLGIEW--ENIAEAEVSEADKNHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|15902365|ref|NP_357915.1| hypothetical protein spr0321 [Streptococcus pneumoniae R6]
gi|116517185|ref|YP_815844.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Streptococcus
pneumoniae D39]
gi|4200434|gb|AAD10182.1| Cps2M [Streptococcus pneumoniae D39]
gi|15457876|gb|AAK99125.1| The type 2 capsule locus of Streptococcus pneumoniae [Streptococcus
pneumoniae R6]
gi|68642308|emb|CAI32733.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|116077761|gb|ABJ55481.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Streptococcus
pneumoniae D39]
Length = 197
Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + ++ LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMEPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNTYQTIIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+ I W + VSE D++ P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPSLGIEW--ENIAEAEVSEADKHHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|48474158|dbj|BAD22629.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus oralis]
Length = 197
Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G EI A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNVYQTEIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D ++ I W + VSE D++ P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPALGIQW--ENLAEAEVSEADKHHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|69246547|ref|ZP_00603993.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Enterococcus faecium
DO]
gi|258616579|ref|ZP_05714349.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Enterococcus faecium DO]
gi|68195215|gb|EAN09670.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Enterococcus faecium
DO]
Length = 167
Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 64/167 (38%), Positives = 96/167 (57%), Gaps = 3/167 (1%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V++ KF D RG+ + +++L G++ Q N FS + T+RGLH+Q +AQ
Sbjct: 2 VQVFDIMKFADFRGYTAVALDNEILSFFGIEFHIKQINQGFSHNKYTMRGLHYQSGEHAQ 61
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
K+V C+ G I +IA+DIR S YG ++ NG YIP GFAHG++T+E NT V
Sbjct: 62 GKIVMCLRGEIMNIALDIRPESLNYGGVYVSILNERNGKCAYIPRGFAHGYLTMEDNTFV 121
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ V + ++ E V++ +SIDI WP+ D +SEKD+N L
Sbjct: 122 QWCVDNDFNAESAKCVSY--ESIDIEWPV-DQQKFIISEKDKNGDML 165
>gi|315221452|ref|ZP_07863373.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus
anginosus F0211]
gi|315189571|gb|EFU23265.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus
anginosus F0211]
Length = 197
Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMVPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D ++ I W LD VSE D+N P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPALGIEWENLDQA--EVSEADKNHPMLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|319947197|ref|ZP_08021431.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus australis ATCC
700641]
gi|319747245|gb|EFV99504.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus australis ATCC
700641]
Length = 197
Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats.
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGLLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKHVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADEGKVLGTWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+DI W + VSE D+N P L
Sbjct: 131 VLSDKVAYSYLVNDYWALELKPKYAFVNYADPSLDIQW--ENLEEAEVSEADKNHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|15672178|ref|NP_266352.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Lactococcus lactis subsp.
lactis Il1403]
gi|116511026|ref|YP_808242.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Lactococcus lactis subsp.
cremoris SK11]
gi|12723050|gb|AAK04294.1|AE006257_4 dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Lactococcus lactis subsp.
lactis Il1403]
gi|116106680|gb|ABJ71820.1| dTDP-4-dehydrorhamnose 3,5-epimerase related enzyme [Lactococcus
lactis subsp. cremoris SK11]
Length = 197
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 17/184 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + LG + F Q+N SFS +RGL
Sbjct: 17 QIPGMLEFDIPVHGDNRGWFKENFQKEKMMPLGFPESFFAEEKLQNNVSFS-RKNVLRGL 75
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G + VD+R +G I A+ G I++P G A+GF
Sbjct: 76 H--AEPWDKYISV-ADGGSVLGAWVDLREG-ENFGHVYQTVIDASKG--IFVPRGVANGF 129
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W D VSE D+N P L
Sbjct: 130 QVLSDTVSYSYLVNDYWALELKPKYAFVNYADPTLGIKW--EDVENAEVSEADKNHPLLK 187
Query: 174 QIDS 177
+ +
Sbjct: 188 DVKA 191
>gi|228476886|ref|ZP_04061531.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus salivarius
SK126]
gi|228251460|gb|EEK10605.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus salivarius
SK126]
Length = 197
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGLLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADEGKVLGTWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+DI W + VSE D+N P L
Sbjct: 131 VLSDKVSYSYLVNDYWALELKPKYAFVNYADPSLDIKW--ENLEEAEVSEADKNHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|296111855|ref|YP_003622237.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Leuconostoc kimchii IMSNU
11154]
gi|295833387|gb|ADG41268.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Leuconostoc kimchii IMSNU
11154]
Length = 198
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 19/182 (10%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQD-----NHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F QD N S S G +RGLH
Sbjct: 18 IPGMIEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFQDNKLQNNVSLS-RKGVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V GR+ VD+R ++G I A+ G IY+P G A+GF
Sbjct: 77 --AEPWDKYISV-ADNGRVLGSWVDLREGD-SFGHVYQTVIDASKG--IYVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYS----VEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D+++ ++ V + D ++ ITW D VSE D+N P L
Sbjct: 131 VLSETVSYSYLVNDYWALALKPKYAF-VNYADPALGITW--DDVENAEVSEADKNHPLLE 187
Query: 174 QI 175
+
Sbjct: 188 DV 189
>gi|229551000|ref|ZP_04439725.1| possible dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus
rhamnosus LMS2-1]
gi|258538289|ref|YP_003172788.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus Lc
705]
gi|229315595|gb|EEN81568.1| possible dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus
rhamnosus LMS2-1]
gi|257149965|emb|CAR88937.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus Lc
705]
Length = 196
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 12/179 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV--QDNHSFSFDCGTIRGLHFQ 59
I+ ++I+ + D RG + + ++ + Q N + + G +RGLH +
Sbjct: 14 EIDGLKIIHVKMVTDERGTVRELFRQSQHSQVLVNPNMAWKQVNLTRT-KRGAVRGLHGE 72
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
A +KLV G F VD RR+SPT G V++ ++ G+Q+++P G +GF +
Sbjct: 73 ----AMSKLVTVAHGEAFGAYVDTRRDSPTLGSVVTVRLTP--GVQVFVPQGVCNGFQAV 126
Query: 120 EMNTEVIYKVTDFYSVEHDS-GVAWQDKSIDITWP--LLDTILPSVSEKDQNLPFLNQI 175
+TE +Y + + + D + I WP + L +S+KD P L ++
Sbjct: 127 ADDTEYLYFFDNEWEKGMSGVALTPLDPDLGIEWPIAIKPDNLAQISKKDSEAPTLKEV 185
>gi|281490685|ref|YP_003352665.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactococcus lactis subsp.
lactis KF147]
gi|281374454|gb|ADA63975.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactococcus lactis subsp.
lactis KF147]
Length = 197
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 17/184 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + LG + F Q+N SFS +RGL
Sbjct: 17 QIPGMLEFDIPVHGDNRGWFKENFQKEKMMPLGFPESFFAEEKLQNNVSFS-RKNVLRGL 75
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G + VD+R +G I A+ G I++P G A+GF
Sbjct: 76 H--AEPWDKYISV-ADGGSVLGAWVDLREG-ENFGHVYQTVIDASKG--IFVPRGVANGF 129
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 130 QVLSDTVSYSYLVNDYWALELKPKYAFVNYADPTLGIKW--ENVENAEVSEADKNHPLLK 187
Query: 174 QIDS 177
+ +
Sbjct: 188 DVKA 191
>gi|2804709|gb|AAC38694.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus pneumoniae]
Length = 197
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHRDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+ I W + VSE D+N P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPSLGIEW--ENIAEAEVSEADKNHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|326692662|ref|ZP_08229667.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leuconostoc argentinum KCTC
3773]
Length = 197
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + LG F Q+N SFS G +RGL
Sbjct: 17 EIPGMLEFDIPVHGDNRGWFKENFQKEKMVPLGFPASFFAEGKLQNNVSFSRQ-GVLRGL 75
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G++ VD+R ++G I A+ G I++P G A+GF
Sbjct: 76 H--AEPWDKYISV-ADNGKVLGAWVDLRAG-ESFGHVYQTVIDASKG--IFVPRGVANGF 129
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W D VSE D+N P L
Sbjct: 130 QVLSETVSYSYLVNDYWALELKPKYAFVNYADPTLGIEW--ADVAHAEVSEADKNHPLLK 187
Query: 174 QI 175
+
Sbjct: 188 DV 189
>gi|68643208|emb|CAI33496.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
Length = 198
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPASFFTEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+ I W + VSE D++ P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPSLGIEW--ENIAEAEVSEADKHHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|2804684|gb|AAC38673.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus pneumoniae]
Length = 198
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVQGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+ I W + VSE D++ P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPSLGIEW--ENIAEAEVSEADKHHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|68643513|emb|CAI33749.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
Length = 198
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I+ + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 ISGMLEFDIPVHGDNRGWFKENFQKEKMVPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G EI A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADNGKVLGTWVDLREG-ETFGNIYQTEIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D + I W + VSE D++ P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYSDPELGIEW--ENLEEAEVSEADKHHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|68642487|emb|CAI32893.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68644360|emb|CAI34458.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
Length = 198
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPASFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+ I W + VSE D++ P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPSLGIEW--ENIAEAEVSEADKHHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|149018053|ref|ZP_01834512.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Streptococcus
pneumoniae SP23-BS72]
gi|168482595|ref|ZP_02707547.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
CDC1873-00]
gi|168485501|ref|ZP_02710009.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
CDC1087-00]
gi|168486647|ref|ZP_02711155.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
CDC1087-00]
gi|168487599|ref|ZP_02712107.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
CDC1087-00]
gi|3818497|gb|AAC69539.1| Cps23fP [Streptococcus pneumoniae]
gi|68642460|emb|CAI32870.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68642542|emb|CAI32938.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643148|emb|CAI33448.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643178|emb|CAI33472.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643237|emb|CAI33519.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643265|emb|CAI33543.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643349|emb|CAI33616.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643545|emb|CAI33779.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643575|emb|CAI33803.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643824|emb|CAI34015.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643935|emb|CAI34106.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68644387|emb|CAI34482.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|147931617|gb|EDK82595.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Streptococcus
pneumoniae SP23-BS72]
gi|172043815|gb|EDT51861.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
CDC1873-00]
gi|183569609|gb|EDT90137.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
CDC1087-00]
gi|183570376|gb|EDT90904.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
CDC1087-00]
gi|183571251|gb|EDT91779.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
CDC1087-00]
Length = 197
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+ I W + VSE D++ P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPSLGIEW--ENIAEAEVSEADKHHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|68643432|emb|CAI33683.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
Length = 197
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+ I W + VSE D++ P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPSLGIEW--ENIAEAEVSEADKHHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|149012102|ref|ZP_01833211.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Streptococcus
pneumoniae SP19-BS75]
gi|194397415|ref|YP_002037041.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase RmlC [Streptococcus
pneumoniae G54]
gi|1881545|gb|AAC44970.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus pneumoniae]
gi|2804690|gb|AAC38678.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus pneumoniae]
gi|2804696|gb|AAC38683.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus pneumoniae]
gi|2804703|gb|AAC38689.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus pneumoniae]
gi|2804715|gb|AAC38699.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus pneumoniae]
gi|68643459|emb|CAI33704.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68644416|emb|CAI34505.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|147763704|gb|EDK70638.1| dTDP-4-dehydrorhamnose 3,5-epimerase, putative [Streptococcus
pneumoniae SP19-BS75]
gi|194357082|gb|ACF55530.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase rmlC [Streptococcus
pneumoniae G54]
Length = 198
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+ I W + VSE D++ P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPSLGIEW--ENIAEAEVSEADKHHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|258507102|ref|YP_003169853.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus GG]
gi|257147029|emb|CAR86002.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus GG]
gi|259648472|dbj|BAI40634.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus
rhamnosus GG]
Length = 196
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 12/179 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV--QDNHSFSFDCGTIRGLHFQ 59
I+ ++I+ + D RG + + ++ + Q N + + G +RGLH +
Sbjct: 14 EIDGLKIIHVKMVTDERGTVRELFRQSQHSQVLVNPNMAWKQVNLTRT-KRGAVRGLHGE 72
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
A +KLV G F VD RR+SPT G V++ ++ G+Q+++P G +GF +
Sbjct: 73 ----AMSKLVTVAHGEAFGAYVDTRRDSPTLGSVVTVRLTP--GVQVFVPQGVCNGFQAV 126
Query: 120 EMNTEVIYKVTDFYSVEHDS-GVAWQDKSIDITWP--LLDTILPSVSEKDQNLPFLNQI 175
+TE +Y + + + D + I WP + L +S+KD P L ++
Sbjct: 127 ADDTEYLYFFDNEWQKGMTGVALTPLDPDLGIEWPIAIKPDNLAQISKKDSEAPTLKEV 185
>gi|125623084|ref|YP_001031567.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Lactococcus lactis subsp.
cremoris MG1363]
gi|27462666|gb|AAO15543.1|AF458777_2 RfbC [Lactococcus lactis subsp. cremoris MG1363]
gi|124491892|emb|CAL96813.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Lactococcus lactis subsp.
cremoris MG1363]
gi|300069832|gb|ADJ59232.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 197
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 17/183 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + LG + F Q+N SFS +RGL
Sbjct: 17 QIPGMLEFDIPVHGDNRGWFKENFQKEKMMPLGFPESFFAEEKLQNNVSFS-RKNVLRGL 75
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G + VD+R +G I A+ G I++P G A+GF
Sbjct: 76 H--AEPWDKYISV-ADGGSVLGAWVDLREG-ENFGHVYQTVIDASKG--IFVPRGVANGF 129
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W D VSE D+N P L
Sbjct: 130 QVLSDTVSYSYLVNDYWALELKPKYAFVNYADPTLGIKW--EDVENAEVSEADKNHPMLK 187
Query: 174 QID 176
+
Sbjct: 188 DVK 190
>gi|307710513|ref|ZP_07646950.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus mitis SK564]
gi|307618776|gb|EFN97915.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus mitis SK564]
Length = 197
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFSRKQ-VLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+ I W + VSE D+N P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPSLGIEW--ENLAEAEVSEADKNHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|68642514|emb|CAI32914.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643402|emb|CAI33658.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
Length = 198
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+ I W + VSE D++ P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPSLGIEW--ENIAEAEVSEADKHHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|68644633|emb|CAI34684.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
Length = 197
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+ I W + VSE D++ P L
Sbjct: 131 VLSDTASYSYLVNDYWALELKPKYAFVNYADPSLGIEW--ENLEEADVSEADKHHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|332077647|gb|EGI88108.1| dTDP-4-dehydrorhamnose 3,5-epimerase family protein [Streptococcus
pneumoniae GA41301]
Length = 197
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+ I W + VSE D++ P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPSLGIKW--ENIAEAEVSEADKHHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|327463279|gb|EGF09600.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis SK1]
Length = 203
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + LG + F Q+N SFS +RGL
Sbjct: 23 GIPGMLEFDIPVRGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGL 81
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 82 H--AEPWDKYISV-ADDGKVLGTWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGF 135
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L N Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 136 QVLSDNVSYSYLVNDYWALELKPKYAFVNYADPALGIQW--ENLEAAEVSEADKNHPLLK 193
Query: 174 QID 176
+
Sbjct: 194 DVK 196
>gi|326405772|gb|ADZ62843.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactococcus lactis subsp.
lactis CV56]
Length = 197
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 17/184 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + LG F Q+N SFS +RGL
Sbjct: 17 QIPGMLEFDIPVHGDNRGWFKENFQKEKMMPLGFPKSFFAEEKLQNNVSFS-RKNVLRGL 75
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G + VD+R ++G I A+ G I++P G A+GF
Sbjct: 76 H--AEPWDKYISV-ADGGSVLGSWVDLREG-ESFGNVYQTVIDASKG--IFVPRGVANGF 129
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W D VSE D+N P L
Sbjct: 130 QVLSDTVSYSYLVNDYWALELKPKYAFVNYADPTLGIKW--EDVENAEVSEADKNHPLLK 187
Query: 174 QIDS 177
+ +
Sbjct: 188 DVKA 191
>gi|297162849|gb|ADI12561.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces bingchenggensis
BCW-1]
Length = 147
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 3/135 (2%)
Query: 41 QDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISA 100
Q N S S G IRG+HF P QAK + C +G + D+ VD+R SPT+G W ++++
Sbjct: 5 QANLSTS-RRGAIRGIHFADVPPGQAKYITCASGAVRDVVVDLRVGSPTFGRWETVDLDD 63
Query: 101 NNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILP 160
+ +++ G H L ++Y + Y E + + D + I W + + P
Sbjct: 64 QSRQALFLTEGIGHAVQGLTEEATIVYMCSAGYVAERERAIHPLDPDLGIDW--IPGVEP 121
Query: 161 SVSEKDQNLPFLNQI 175
+S KD P + +
Sbjct: 122 ILSAKDTVAPTVAEA 136
>gi|288919318|ref|ZP_06413653.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EUN1f]
gi|288349312|gb|EFC83554.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EUN1f]
Length = 191
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 14/184 (7%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF--VQDNHSFSFDCGTIRGLHFQ 59
I + I D RGWF + + L GL + F VQ + S++ G RG H
Sbjct: 14 EIPGLLIFDITSIGDERGWFQEKFHRAKLVAAGLPESFEVVQTSVSYNRQAGVTRGFH-- 71
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
P+ K + +AG++F +D+RR +G V++EI +NG +++P G A+ F TL
Sbjct: 72 AEPWD--KYISVVAGQVFCAFLDLRRG-ENFGRVVTVEI--DNGRAVFLPRGVANSFQTL 126
Query: 120 EMNTEVIYKVTDFYSVE--HDS-GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+T +Y V +S + + V D + + WP+ +SE+D+ L
Sbjct: 127 VDDTYYLYSVNRHWSADQYDEYVFVNLADPEVGVHWPIPLD-KAVISERDRGHVPLADAR 185
Query: 177 SPFE 180
PFE
Sbjct: 186 -PFE 188
>gi|319939395|ref|ZP_08013755.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase rmlC [Streptococcus
anginosus 1_2_62CV]
gi|319811381|gb|EFW07676.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase rmlC [Streptococcus
anginosus 1_2_62CV]
Length = 197
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMVPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D ++ I W LD VSE D+N P L
Sbjct: 131 VLSETVSYSYLVNDYWALELKPKYAFVNYADPALGIEWESLDQA--EVSEADKNHPMLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|309952140|gb|ADO95349.1| RmlC [Streptococcus pneumoniae]
Length = 198
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N S S +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSLS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+ I W + VSE D++ P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPSLGIEW--ENIAEAEVSEADKHHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|169836967|ref|ZP_02870155.1| dTDP-4-dehydrorhamnose reductase [candidate division TM7
single-cell isolate TM7a]
Length = 169
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 9/157 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
I + ++K D+RGWF + Y + ++ LGL VQ+N SF+ G RGLH +
Sbjct: 18 IPGLFVVKLPVHGDNRGWFKENYQKEKMEALGLPSFDIVQNNISFNDKAGATRGLHAE-- 75
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
K + GR+F D+R+ ++G + EI+ G I++P G A+G+ L+
Sbjct: 76 --PWNKFISTANGRVFGAWCDLRKGD-SFGRVFTHEINP--GTAIFVPKGVANGYQALDD 130
Query: 122 NTEVIYKVTDFYSVEHDSG-VAWQDKSIDITWPLLDT 157
N Y V +S + V D ++ I WP+
Sbjct: 131 NIAYTYLVDAHWSPDAKYTFVNLFDPALGINWPISQE 167
>gi|225860393|ref|YP_002741902.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
Taiwan19F-14]
gi|298229716|ref|ZP_06963397.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae str.
Canada MDR_19F]
gi|225726502|gb|ACO22353.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
Taiwan19F-14]
gi|327390775|gb|EGE89115.1| dTDP-4-dehydrorhamnose 3,5-epimerase family protein [Streptococcus
pneumoniae GA04375]
Length = 198
Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHRDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+ I W + VSE D++ P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPSLGIEW--ENIAEAEVSEADKHHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|222153258|ref|YP_002562435.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus uberis
0140J]
gi|222114071|emb|CAR42478.1| putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
uberis 0140J]
Length = 197
Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGLIEFDIPVHGDNRGWFKENFQKEKMIPLGFPESFFAEDKLQNNVSFS-RKHVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R ++G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADEGKVLGTWVDLREGD-SFGQVYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S++I W + VSE D+N PFL
Sbjct: 131 VLSDKVAYSYLVNDYWALELKPKYAFVNYADPSLNIAW--ENLEEAEVSEADKNHPFLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|229821452|ref|YP_002882978.1| dTDP-4-dehydrorhamnose 35-epimerase related [Beutenbergia cavernae
DSM 12333]
gi|229567365|gb|ACQ81216.1| dTDP-4-dehydrorhamnose 35-epimerase related [Beutenbergia cavernae
DSM 12333]
Length = 189
Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 9/176 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ + +L ++ D RG + + + + E GL Q + G IRGLH ++
Sbjct: 16 IDGLHVLHVKEIHDERGTIREFFRASAMAEAGLHGGAWQQLNLTETSRGAIRGLHGEQ-- 73
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
KLV +AG+ F VD R S T G V++ ++ G+Q+ +P G +GF L
Sbjct: 74 --MTKLVSVVAGQAFGAYVDARPGSATAGAVVTVPLT--LGVQVLVPPGVCNGFQALADG 129
Query: 123 TEVIYKVTDFYSVEHD-SGVAWQDKSIDITWPL--LDTILPSVSEKDQNLPFLNQI 175
T+ +Y + V D ++ I WP+ +S KD LP L +
Sbjct: 130 TQYLYCFDAEWVPGMPGRAVHPLDPALGIAWPIAVDPADRERLSAKDAGLPSLADV 185
>gi|312864883|ref|ZP_07725114.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus downei
F0415]
gi|311100010|gb|EFQ58223.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus downei
F0415]
Length = 197
Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMIEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAGGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R ++G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADEGKVLGSWVDLREG-ESFGHTYQTIIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 131 VLSDKVSYSYLVNDYWALELKPKYAFVNYADPALGIEW--ENLAEAEVSEADKNHPMLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|307708206|ref|ZP_07644673.1| RmlC [Streptococcus mitis NCTC 12261]
gi|307615652|gb|EFN94858.1| RmlC [Streptococcus mitis NCTC 12261]
Length = 197
Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPEYFFTEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D+++++ V + D + I W + VSE D+N P L
Sbjct: 131 VLSDTVSYSYLVNDYWALDLKPKYAFVNYADPELGIEW--ANLAEAEVSEADKNHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|116618517|ref|YP_818888.1| dTDP-4-dehydrorhamnose 3,5-epimerase related enzyme [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|116097364|gb|ABJ62515.1| dTDP-4-dehydrorhamnose 3,5-epimerase related enzyme [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 197
Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 52/181 (28%), Positives = 80/181 (44%), Gaps = 17/181 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N S S G +RGLH
Sbjct: 18 IPGMIAFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFKEDKLQNNVSLS-RKGVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V GR+ VD+R ++G I A+ G IY+P G A+GF
Sbjct: 77 --AEPWDKYISV-ADNGRVLGSWVDLREGD-SFGHVYQTVIDASKG--IYVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D+++++ V + D ++ I W D VSE D+N P L
Sbjct: 131 VLSETVSYSYLVNDYWALDLKPKYAFVNYADPALGIEW--YDVENAEVSEADKNHPLLKD 188
Query: 175 I 175
+
Sbjct: 189 V 189
>gi|290580173|ref|YP_003484565.1| dTDP-4-keto-L-rhamnose reductase [Streptococcus mutans NN2025]
gi|254997072|dbj|BAH87673.1| dTDP-4-keto-L-rhamnose reductase [Streptococcus mutans NN2025]
Length = 198
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 19 IPGMIEFDIPVHGDNRGWFKENFQKEKMVPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 77
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R ++G I A+ G I++P G A+GF
Sbjct: 78 --AEPWDKYISV-ADEGKVLGSWVDLREGD-SFGHVYQTVIDASKG--IFVPRGVANGFQ 131
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 132 VLSDKVSYSYLVNDYWALELKPKYAFVNYADPTLGIEW--ENLAEAQVSEADKNHPLLKD 189
Query: 175 ID 176
+
Sbjct: 190 VK 191
>gi|325687674|gb|EGD29695.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis SK72]
gi|327461219|gb|EGF07552.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK1057]
gi|332359734|gb|EGJ37551.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK355]
Length = 203
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 17/183 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + LG + F Q+N SFS +RGL
Sbjct: 23 GIPGMLEFDIPVRGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGL 81
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 82 H--AEPWDKYISV-ADDGKVLGTWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGF 135
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 136 QVLSDTVSYSYLVNDYWALELKPKYAFVNYADPALGIQW--ENLEAAEVSEADKNHPLLK 193
Query: 174 QID 176
+
Sbjct: 194 DVK 196
>gi|227431063|ref|ZP_03913123.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|227353183|gb|EEJ43349.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
Length = 197
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 17/181 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG F Q+N S S G +RGLH
Sbjct: 18 IPGMIEFDIPVHGDNRGWFKENFQKEKMMPLGFPASFFKADKLQNNVSLSRQ-GVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V GR+ VD+R ++G I A+ G IY+P G A+GF
Sbjct: 77 --AEPWDKYISV-ADNGRVLGSWVDLREGD-SFGHVYQTVIDASKG--IYVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D+++++ V + D ++ I W D VSE D+N P L
Sbjct: 131 VLSETVSYSYLVNDYWALDLKPKYAFVNYADPALGIEW--ADVAHAEVSEADKNHPLLKD 188
Query: 175 I 175
+
Sbjct: 189 V 189
>gi|257413304|ref|ZP_04742626.2| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseburia intestinalis L1-82]
gi|257204066|gb|EEV02351.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Roseburia intestinalis L1-82]
Length = 181
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 59/173 (34%), Positives = 86/173 (49%), Gaps = 15/173 (8%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQ 65
V I FED RG+ S Y + Q N +S + T+RGLHFQ +AQ
Sbjct: 17 VFI--PPAFEDFRGYLSVPYDRDV------PFQVCQINQGYSREAFTLRGLHFQMGEHAQ 68
Query: 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125
AK+V C+ G IF++AVD+R +G S +S N +YIP GFAHG++TLE +T +
Sbjct: 69 AKMVSCLHGSIFNVAVDLRPG-KCFGYSYSEVLSFENRKMMYIPKGFAHGYLTLEDDTLM 127
Query: 126 IYKVTDFYSVEHDSGVAWQDKSI---DITWPLLDTILPSVSEKDQNLPFLNQI 175
+ V + E V + D + W +SEKD+N +L ++
Sbjct: 128 QWCVDQDFCGETAQAVRYDDPDLVWKGEAW---TKGEYIISEKDKNAMWLGEL 177
>gi|323351360|ref|ZP_08087016.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
VMC66]
gi|322122584|gb|EFX94295.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
VMC66]
Length = 203
Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + LG + F +Q+N SFS +RGL
Sbjct: 23 GIPGMLEFDIPVRGDNRGWFKENFQKEKMLPLGFPESFYAEGKLQNNVSFS-RKNVLRGL 81
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 82 H--AEPWDKYISV-ADDGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGF 135
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 136 QVLSDTVSYSYLVNDYWALELKPKYAFVNYADPALGIQW--ENLEAAEVSEADKNHPLLK 193
Query: 174 QID 176
+
Sbjct: 194 DVK 196
>gi|327470793|gb|EGF16249.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK330]
Length = 203
Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 17/183 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + LG + F Q+N SFS +RGL
Sbjct: 23 GIPGMLEFDIPVRGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGL 81
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 82 H--AEPWDKYISV-ADDGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGF 135
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 136 QVLSDTVSYSYLVNDYWALELKPKYAFVNYADPALGIQW--ENLEAAEVSEADKNHPLLK 193
Query: 174 QID 176
+
Sbjct: 194 DVK 196
>gi|1813346|dbj|BAA11248.1| dTDP-4-keto-L-rhamnose reductase [Streptococcus mutans]
Length = 198
Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 19 IPGMIEFDIPVHGDNRGWFKENFQKEKMVPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 77
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R ++G I A+ G I++P G A+GF
Sbjct: 78 --AEPWDKYISV-ADEGKVLGSWVDLREGD-SFGHVYQAVIDASKG--IFVPRGVANGFQ 131
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 132 VLSDKVSYSYLVNDYWALELKPKYAFVNYADPTLGIEW--ENLAEAQVSEADKNHPLLKD 189
Query: 175 ID 176
+
Sbjct: 190 VK 191
>gi|170017546|ref|YP_001728465.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leuconostoc citreum KM20]
gi|169804403|gb|ACA83021.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leuconostoc citreum KM20]
Length = 197
Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
+I + D+RGWF + + + + LG F Q+N S S G +RGL
Sbjct: 17 DIPGMIEFDIPVHGDNRGWFKENFQKEKMVPLGFPIDFFAADKLQNNVSLSRQ-GVLRGL 75
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G++ VD+R ++G I A+ G I++P G A+GF
Sbjct: 76 H--AEPWDKYISV-ADNGKVLGAWVDLREG-ESFGHVYQTVIDASKG--IFVPRGVANGF 129
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D+++++ V + D ++ I W D VSE D+N P L
Sbjct: 130 QVLSETVSYSYLVNDYWALDLKPKYAFVNYADPTLGIAW--DDVDNAEVSEADKNHPMLK 187
Query: 174 QI 175
+
Sbjct: 188 DV 189
>gi|312867299|ref|ZP_07727508.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus
parasanguinis F0405]
gi|311097000|gb|EFQ55235.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus
parasanguinis F0405]
Length = 197
Score = 154 bits (391), Expect = 6e-36, Method: Composition-based stats.
Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGLMEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNISFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R ++G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADEGKVLGTWVDLREGD-SFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+DI W + VSE D+N P L
Sbjct: 131 VLTDKVAYTYLVNDYWALELKPKYAFVNYADPSLDIQW--ENLEEAEVSEADKNHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|332360987|gb|EGJ38791.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK1056]
Length = 203
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 17/183 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + LG + F Q+N SFS +RGL
Sbjct: 23 GIPGMLEFDIPVRGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGL 81
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 82 H--AEPWDKYISV-ADDGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGF 135
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 136 QVLSDTVSYSYLVNDYWALELKPKYAFVNYADPALGIQW--ENLEAAEVSEADKNHPLLK 193
Query: 174 QID 176
+
Sbjct: 194 DVK 196
>gi|13377463|gb|AAK20722.1|AF316642_16 RmlC [Streptococcus pneumoniae]
gi|68643291|emb|CAI33567.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|68643320|emb|CAI33591.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
Length = 197
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S I W + VSE D++ P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPSFGIEW--ENIAEAEVSEADKHHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|322389834|ref|ZP_08063375.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus parasanguinis
ATCC 903]
gi|321143415|gb|EFX38852.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus parasanguinis
ATCC 903]
Length = 197
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGLMEFDIPVRGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNISFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADEGKVLGTWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+DI W + VSE D+N P L
Sbjct: 131 VLTDKVAYTYLVNDYWALELKPKYAFVNYADPSLDIQW--ENLEEAEVSEADKNHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|300779957|ref|ZP_07089813.1| probable dTDP-4-keto-6-deoxyglucose-3, 5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
genitalium ATCC 33030]
gi|300534067|gb|EFK55126.1| probable dTDP-4-keto-6-deoxyglucose-3, 5-epimerase and
dTDP-6-deoxy-L-mannose-dehydrogenase [Corynebacterium
genitalium ATCC 33030]
Length = 449
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 52/174 (29%), Positives = 73/174 (41%), Gaps = 20/174 (11%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-QDNHSFSFDCGTIRGLHFQRP 61
I + + D+RGWF + + G + V Q+N SF+ G RG+H
Sbjct: 12 IEGLEVRTLTVHGDNRGWFKENW-------AGDPAMRVEQNNVSFNAQRGATRGMH--AE 62
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P+ K V GR++ VD+R SPT+G EI + +++P G A+GF LE
Sbjct: 63 PWD--KYVSVATGRVYGAWVDLREGSPTFGAKYGCEIGPDT--AVFVPRGIANGFQALED 118
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
T IY +S +S WPL T VS KD P L
Sbjct: 119 ATTYIYLCNARWSPHAQYAFCSYRES---EWPLEPT---EVSAKDLEHPMLADA 166
>gi|68643855|emb|CAI34040.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
Length = 197
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+ I W + VSE D+ P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPSLGIEW--ENIAEAEVSEADKYHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|325690527|gb|EGD32530.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK115]
Length = 203
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 17/183 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + LG + F Q+N SFS +RGL
Sbjct: 23 GIPGMLEFDIPVRGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGL 81
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 82 H--AEPWDKYISV-ADDGKVLGSWVDLREGD-TFGNTYQTVIDASKG--IFVPRGVANGF 135
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 136 QVLSDTVSYSYLVNDYWALELKPKYAFVNYADPALGIQW--ENLEAAEVSEADKNHPLLK 193
Query: 174 QID 176
+
Sbjct: 194 DVK 196
>gi|324994660|gb|EGC26573.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK678]
gi|327474886|gb|EGF20291.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK408]
gi|327490012|gb|EGF21801.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK1058]
gi|328946485|gb|EGG40625.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK1087]
Length = 203
Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 17/183 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + LG + F Q+N SFS +RGL
Sbjct: 23 GIPGMLEFDIPVRGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGL 81
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 82 H--AEPWDKYISV-ADDGKVLGTWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGF 135
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 136 QVLSDKVSYSYLVNDYWALELKPKYAFVNYADPALGIQW--ENLEAAEVSEADKNHPLLK 193
Query: 174 QID 176
+
Sbjct: 194 DVK 196
>gi|324991645|gb|EGC23578.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK353]
Length = 203
Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 17/183 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + LG + F Q+N SFS +RGL
Sbjct: 23 GIPGMMEFDIPVRGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGL 81
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 82 H--AEPWDKYISV-ADDGKVLGTWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGF 135
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 136 QVLSDTVSYSYLVNDYWALELKPKYAFVNYADPALGIQW--ENLEAAEVSEADKNHPLLK 193
Query: 174 QID 176
+
Sbjct: 194 DVK 196
>gi|320546508|ref|ZP_08040823.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus equinus ATCC
9812]
gi|320448893|gb|EFW89621.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus equinus ATCC
9812]
Length = 198
Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMIEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-HKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R ++G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADEGKVLGSWVDLREG-ESFGHVYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 131 VLSDKVSYSYLVNDYWALELKPKYAFVNYADPTLGIKW--ENLEEAEVSEADKNHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|288905035|ref|YP_003430257.1| dTDP 4-keto 6-deoxyglucose 3,5-epimerase [Streptococcus
gallolyticus UCN34]
gi|306831108|ref|ZP_07464269.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|325978004|ref|YP_004287720.1| dTDP-4-keto-L-rhamnose reductase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|288731761|emb|CBI13322.1| putative dTDP 4-keto 6-deoxyglucose 3,5-epimerase [Streptococcus
gallolyticus UCN34]
gi|304426674|gb|EFM29785.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|325177932|emb|CBZ47976.1| dTDP-4-keto-L-rhamnose reductase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 197
Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMIEFDIPVHGDNRGWFKENFQKEKMVPLGFPESFFAEGKLQNNVSFS-HKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R ++G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADEGKVLGSWVDLREGD-SFGHVYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 131 VLSDKVAYSYLVNDYWALELKPKYAFVNYADPTLGIKW--ENLEAAEVSEADKNHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|68642431|emb|CAI32846.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
Length = 198
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+ I W + VSE D+N L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPSLGIEW--ENIAEAEVSEADKNHSLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|325694720|gb|EGD36626.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK150]
Length = 203
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I+ + D+RGWF + + + + LG + F Q+N SFS +RGL
Sbjct: 23 GISGMLEFDIPVRGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGL 81
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 82 H--AEPWDKYISV-ADDGKVLGTWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGF 135
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 136 QVLSDTVSYSYLVNDYWALELKPKYAFVNYADPALGIQW--ENLEAAEVSEADKNHPLLK 193
Query: 174 QID 176
+
Sbjct: 194 DVK 196
>gi|171779671|ref|ZP_02920627.1| hypothetical protein STRINF_01508 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281773|gb|EDT47207.1| hypothetical protein STRINF_01508 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 198
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMIEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-HKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R ++G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADEGKVLGSWVDLREGD-SFGHVYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 131 VLSDKVSYSYLVNDYWALELKPKYAFVNYADPTLGIKW--ENLEEAEVSEADKNHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|332362097|gb|EGJ39899.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis SK49]
Length = 203
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 17/183 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + LG + F Q+N SFS +RGL
Sbjct: 23 GIPGMMEFDIPVRGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGL 81
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 82 H--AEPWDKYISV-ADDGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGF 135
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 136 QVLSDTVSYSYLVNDYWALELKPKYAFVNYADPALGIQW--ENLEAAEVSEADKNHPLLK 193
Query: 174 QID 176
+
Sbjct: 194 DVK 196
>gi|221231237|ref|YP_002510389.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase RmlC [Streptococcus
pneumoniae ATCC 700669]
gi|2804722|gb|AAC38705.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus pneumoniae]
gi|2804728|gb|AAC38710.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus pneumoniae]
gi|3320400|gb|AAC38758.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus pneumoniae]
gi|220673697|emb|CAR68190.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase RmlC [Streptococcus
pneumoniae ATCC 700669]
Length = 197
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 17/172 (9%)
Query: 13 KFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLHFQRPPYAQAK 67
D+RGWF + + + + LG + F Q+N SFS +RGLH P+ +
Sbjct: 28 VHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH--AEPWDKYI 84
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
V G++ VD+R T+G I A+ G I++P G A+GF L Y
Sbjct: 85 SV-ADGGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQVLSDTVSYSY 140
Query: 128 KVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
V D++++E V + D S+ I W + VSE D+N P L +
Sbjct: 141 LVNDYWALELKPKYAFVNYADPSLGIEW--ENIAEAEVSEADKNHPLLKDVK 190
>gi|125718224|ref|YP_001035357.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus sanguinis
SK36]
gi|125498141|gb|ABN44807.1| DTDP-4-keto-6-deoxyglucose-3,5-epimerase, putative [Streptococcus
sanguinis SK36]
Length = 197
Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 17/183 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + LG + F Q+N SFS +RGL
Sbjct: 17 GIPGMLEFDIPVRGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGL 75
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 76 H--AEPWDKYISV-ADDGKVLGTWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGF 129
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 130 QVLSDTVSYSYLVNDYWALELKPKYAFVNYADPALGIQW--ENLEAAEVSEADKNHPLLK 187
Query: 174 QID 176
+
Sbjct: 188 DVK 190
>gi|76798347|ref|ZP_00780591.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus agalactiae
18RS21]
gi|76586298|gb|EAO62812.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus agalactiae
18RS21]
Length = 197
Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats.
Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 19/183 (10%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SF+ T+RGLH
Sbjct: 18 IPGLLEFDITVRGDNRGWFKENFQKEKMIPLGFPESFFEADKLQNNISFN-KKNTLRGLH 76
Query: 58 FQRPPYAQAKLVRCI-AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
P+ K V GR+ VD+R ++G I A+ G I++P G A+GF
Sbjct: 77 --AEPWD--KYVSIADEGRVIGTWVDLREGD-SFGNVYQTIIDASKG--IFVPRGVANGF 129
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 130 QVLSDKAAYTYLVNDYWALELKPKYAFVNYADPNLGIQW--ENLEEAEVSEADKNHPLLK 187
Query: 174 QID 176
+
Sbjct: 188 DVK 190
>gi|89994596|emb|CAI34065.2| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
Length = 202
Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 18/185 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLL---DTILPSVSEKDQNLPF 171
L Y V D++++E V + D S+ I W + + VSE D++ P
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPSLGIEWENIAEAEVSEAEVSEADKHHPL 190
Query: 172 LNQID 176
L +
Sbjct: 191 LKDVK 195
>gi|25011321|ref|NP_735716.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus agalactiae
NEM316]
gi|77407798|ref|ZP_00784551.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus agalactiae
COH1]
gi|24412859|emb|CAD46931.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus agalactiae
NEM316]
gi|77173545|gb|EAO76661.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus agalactiae
COH1]
Length = 197
Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 19/183 (10%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SF+ T+RGLH
Sbjct: 18 IPGLLEFDITVRGDNRGWFKENFQKEKMIPLGFPESFFEADKLQNNISFN-KKNTLRGLH 76
Query: 58 FQRPPYAQAKLVRCI-AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
P+ K V GR+ VD+R ++G I A+ G I++P G A+GF
Sbjct: 77 --AEPWD--KYVSIADEGRVIGTWVDLREGD-SFGNVYQTIIDASKG--IFVPRGVANGF 129
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 130 QVLSDKAAYTYLVNDYWALELKPKYAFVNYADPNLGIQW--ENLEEAEVSEADKNHPLLK 187
Query: 174 QID 176
+
Sbjct: 188 DVK 190
>gi|322381305|ref|ZP_08055308.1| hypothetical protein PL1_0219 [Paenibacillus larvae subsp. larvae
B-3650]
gi|321154881|gb|EFX47152.1| hypothetical protein PL1_0219 [Paenibacillus larvae subsp. larvae
B-3650]
Length = 119
Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 49/120 (40%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
+H+Q PPY +AKLV+CI G ++D+ +D+R S TY ++ ++ N+G +YIP GFAHG
Sbjct: 1 MHYQHPPYGEAKLVQCIRGELYDVIIDLRPLSKTYRQTFAVHLAGNSGTMLYIPEGFAHG 60
Query: 116 FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
F TL+ TEV+Y ++ Y E +G+ W D S I WPL + +SE+D++ P +
Sbjct: 61 FQTLQDETEVLYYMSSPYKPEAAAGIRWNDPSFSIVWPLD---VKIISERDRHYPDYREF 117
>gi|325695966|gb|EGD37857.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK160]
gi|332367029|gb|EGJ44769.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK1059]
Length = 203
Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 17/183 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + LG + F Q+N SFS +RGL
Sbjct: 23 GIPGMLEFDIPVRGDNRGWFKENFQKEKMLPLGFSESFFAEGKLQNNVSFS-RKNVLRGL 81
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 82 H--AEPWDKYISV-ADDGKVLGTWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGF 135
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 136 QVLSDTVSYSYLVNDYWALELKPKYAFVNYADPALGIQW--ENLEAAEVSEADKNHPLLK 193
Query: 174 QID 176
+
Sbjct: 194 DVK 196
>gi|251782676|ref|YP_002996979.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
gi|242391306|dbj|BAH81765.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
Length = 197
Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + +G + F Q+N SFS +RGL
Sbjct: 17 EIPGLLEFDIPVRGDNRGWFKENFQKEKMLPIGFPERFFEEGKLQNNVSFSRQ-HVLRGL 75
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G++ VD+R T+G I A+ G +++P G A+GF
Sbjct: 76 H--AEPWDKYISV-ADDGKVLGAWVDLREG-ETFGNVYQTVIDASKG--MFVPRGVANGF 129
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D+++++ V + D S+ ITW + VSE D+N P L+
Sbjct: 130 QVLSETVSYSYLVNDYWALDLKPKYAFVNYADPSLGITW--ENLAAAEVSEADKNHPLLS 187
Query: 174 QID 176
+
Sbjct: 188 DVK 190
>gi|209559281|ref|YP_002285753.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes NZ131]
gi|209540482|gb|ACI61058.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes NZ131]
Length = 197
Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + +G + F Q+N SFS +RGL
Sbjct: 17 EIPGLLEFDIPVRGDNRGWFKENFQKEKMLPIGFPERFFEEGKLQNNVSFSRQ-HVLRGL 75
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G++ VD+R T+G I A+ G +++P G A+GF
Sbjct: 76 H--AEPWDKYISV-ADDGKVLGAWVDLREG-ETFGNVYQTVIDASKG--MFVPRGVANGF 129
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D+++++ V + D S+ ITW + VSE D+N P L+
Sbjct: 130 QVLSETVSYSYLVNDYWALDLKPKYAFVNYADPSLGITW--ENLAAAEVSEADKNHPLLS 187
Query: 174 QID 176
+
Sbjct: 188 DVK 190
>gi|262282423|ref|ZP_06060191.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus sp.
2_1_36FAA]
gi|262261714|gb|EEY80412.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus sp.
2_1_36FAA]
Length = 192
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 17/183 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + LG + F Q+N SFS +RGL
Sbjct: 17 GIPGMLEFDIPVRGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGL 75
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 76 H--AEPWDKYISV-ADDGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGF 129
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 130 QVLSDTVSYSYLVNDYWALELKPKYAFVNYADPALGIQW--ENLEAAEVSEADKNHPLLK 187
Query: 174 QID 176
+
Sbjct: 188 DVK 190
>gi|28849788|gb|AAN64545.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus gordonii]
Length = 197
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 17/183 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + LG + F Q+N SFS +RGL
Sbjct: 17 GIPGMLEFDIPVRGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGL 75
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 76 H--AEPWDKYISV-ADDGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGF 129
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 130 QVLSDTVSYSYLVNDYWALELKPKYAFVNYADPALGIQW--ENLEAAEVSEADKNHPLLK 187
Query: 174 QID 176
+
Sbjct: 188 DVK 190
>gi|15674954|ref|NP_269128.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes M1
GAS]
gi|19745996|ref|NP_607132.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS8232]
gi|21910183|ref|NP_664451.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS315]
gi|28896117|ref|NP_802467.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes SSI-1]
gi|50914107|ref|YP_060079.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS10394]
gi|71903380|ref|YP_280183.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS6180]
gi|71910548|ref|YP_282098.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS5005]
gi|94988424|ref|YP_596525.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS9429]
gi|94990303|ref|YP_598403.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS10270]
gi|94994225|ref|YP_602323.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS10750]
gi|139473906|ref|YP_001128622.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes str.
Manfredo]
gi|81372133|sp|Q5XCG7|RMLC_STRP6 RecName: Full=Probable dTDP-4-dehydrorhamnose 3,5-epimerase;
AltName: Full=Thymidine diphospho-4-keto-rhamnose
3,5-epimerase; AltName: Full=dTDP-4-keto-6-deoxyglucose
3,5-epimerase; AltName:
Full=dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase;
AltName: Full=dTDP-L-rhamnose synthase
gi|13622099|gb|AAK33849.1| putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
pyogenes M1 GAS]
gi|19748159|gb|AAL97631.1| putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
pyogenes MGAS8232]
gi|21904376|gb|AAM79254.1| putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
pyogenes MGAS315]
gi|28811367|dbj|BAC64300.1| putative dTDP-4-keto-6-deoxyglucose-3,5- epimerase [Streptococcus
pyogenes SSI-1]
gi|50903181|gb|AAT86896.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS10394]
gi|71802475|gb|AAX71828.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS6180]
gi|71853330|gb|AAZ51353.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS5005]
gi|94541932|gb|ABF31981.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS9429]
gi|94543811|gb|ABF33859.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS10270]
gi|94547733|gb|ABF37779.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS10750]
gi|134272153|emb|CAM30398.1| putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
pyogenes str. Manfredo]
gi|323127496|gb|ADX24793.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
Length = 197
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + +G + F Q+N SFS +RGL
Sbjct: 17 EIPGLLEFDIPVRGDNRGWFKENFQKEKMLPIGFPERFFEEGKLQNNVSFSRQ-HVLRGL 75
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G++ VD+R T+G I A+ G +++P G A+GF
Sbjct: 76 H--AEPWDKYISV-ADDGKVLGAWVDLREG-ETFGNVYQTVIDASKG--MFVPRGVANGF 129
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D+++++ V + D S+ ITW + VSE D+N P L+
Sbjct: 130 QVLSETVSYSYLVNDYWALDLKPKYAFVNYADPSLGITW--ENLAAAEVSEADKNHPLLS 187
Query: 174 QID 176
+
Sbjct: 188 DVK 190
>gi|157150920|ref|YP_001450299.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus gordonii
str. Challis substr. CH1]
gi|157075714|gb|ABV10397.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus gordonii
str. Challis substr. CH1]
Length = 197
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 17/183 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + LG + F Q+N SFS +RGL
Sbjct: 17 GIPGMLEFDIPVRGDNRGWFKENFQKEKMLPLGFPESFFVEGKLQNNVSFS-RKNVLRGL 75
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 76 H--AEPWDKYISV-ADDGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGF 129
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 130 QVLSDTVSYSYLVNDYWALELKPKYAFVNYADPALGIQW--ENLEAAEVSEADKNHPLLK 187
Query: 174 QID 176
+
Sbjct: 188 DVK 190
>gi|223933262|ref|ZP_03625252.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Streptococcus
suis 89/1591]
gi|302024035|ref|ZP_07249246.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus suis 05HAS68]
gi|330832506|ref|YP_004401331.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus suis ST3]
gi|223898076|gb|EEF64447.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Streptococcus
suis 89/1591]
gi|329306729|gb|AEB81145.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus suis ST3]
Length = 197
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGTWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+DI W + VSE D+N P L
Sbjct: 131 VLSDFVAYSYLVNDYWALELKPKYAFVNYADPSLDIQW--ENLEEAEVSEADKNHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|324994020|gb|EGC25939.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus sanguinis
SK405]
Length = 203
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 17/183 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + LG + F Q+N SFS +RGL
Sbjct: 23 GIPGMLEFDIPVRGDNRGWFKENFQKEKMLPLGFPESFFVEGKLQNNVSFS-RKNVLRGL 81
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 82 H--AEPWDKYISV-ADDGKVLGTWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGF 135
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 136 QVLSDIVSYSYLVNDYWALELKPKYAFVNYADPALGIQW--ENLEAAEVSEADKNHPLLK 193
Query: 174 QID 176
+
Sbjct: 194 DVK 196
>gi|306833215|ref|ZP_07466344.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus bovis ATCC
700338]
gi|304424582|gb|EFM27719.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus bovis ATCC
700338]
Length = 197
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMIEFDIPVHGDNRGWFKENFQKEKMIPLGFPESFFAEGKLQNNVSFS-HKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R ++G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADEGKVLGSWVDLREGD-SFGHVYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 131 VLSDKVAYSYLVNDYWALELKPKYAFVNYADPTLGIKW--ENLEAAEVSEADKNHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|56807813|ref|ZP_00365660.1| COG1898: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Streptococcus pyogenes M49 591]
Length = 197
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + +G + F Q+N SFS +RGL
Sbjct: 17 EIPGLLEFDIPVRGDNRGWFKENFQKEKMLPIGFPERFFEEGKLQNNVSFSRQ-HVLRGL 75
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G++ VD+R T+G I A+ G +++P G A+GF
Sbjct: 76 H--AEPWDKYISV-ADDGKVLGAWVDLREG-ETFGNVYQTVIDASKG--MFVPRGVANGF 129
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D+++++ V + D S+ ITW + VSE D+N P L+
Sbjct: 130 QVLSETVSYSYLVNDYWALDLKPKYAFVNYADPSLGITW--ENLAAAEVSEADKNHPLLS 187
Query: 174 QID 176
+
Sbjct: 188 DLK 190
>gi|322385642|ref|ZP_08059286.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus cristatus ATCC
51100]
gi|321270380|gb|EFX53296.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus cristatus ATCC
51100]
Length = 203
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + LG + F Q+N SFS +RGL
Sbjct: 23 GIPGMLEFDIPVRGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGL 81
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G++ VD+R T+G I+A+ G I++P G A+GF
Sbjct: 82 H--AEPWDKYISV-ADDGKVLGSWVDLREG-ETFGNTYQTVIAASKG--IFVPRGVANGF 135
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 136 QVLSDTVSYSYLVNDYWALELKPKYAFVNYADPALGIQW--ENLEAAEVSEADKNHPLLK 193
Query: 174 QID 176
+
Sbjct: 194 DVK 196
>gi|242310053|ref|ZP_04809208.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Helicobacter pullorum MIT
98-5489]
gi|239523350|gb|EEQ63216.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Helicobacter pullorum MIT
98-5489]
Length = 185
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 11/171 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I+ KF+D RG ++S+ + +L F+ D S IRG+H
Sbjct: 13 LEGVYIITPNKFQDLRGEIWTAFTSEAIDKLLPNNLQFIHDKFIHS-KHNVIRGIH---G 68
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ KL C+ G I + VD R++SPTY + I+ N I +P+GF +
Sbjct: 69 DHKTYKLATCVYGEIHQVVVDCRKDSPTYLKYEKFIINQENQQIILVPSGFGNAHYVSSD 128
Query: 122 NTEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
+ YK + AW D I I WP T P +S++D
Sbjct: 129 SAVYYYKCAYKGSYVDANEQFTFAWNDPRIGIDWP---TNNPILSDRDMEA 176
>gi|322372727|ref|ZP_08047263.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
sp. C150]
gi|321277769|gb|EFX54838.1| dTDP-4-keto-L-rhamnose reductase and
dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
sp. C150]
Length = 197
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMIEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADEGKVLGTWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDSGVA---WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E A + D S+DI W + VSE D+N P L
Sbjct: 131 VLSDKVAYSYLVNDYWALELKPKYAFVYYADPSLDIKW--ENLKEAEVSEADKNHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|77412812|ref|ZP_00789017.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus agalactiae 515]
gi|77161108|gb|EAO72214.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus agalactiae 515]
Length = 197
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 19/183 (10%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SF+ T+RGLH
Sbjct: 18 IPGLLEFDIPVRGDNRGWFKENFQKEKMIPLGFPESFFEADKLQNNISFN-KKNTLRGLH 76
Query: 58 FQRPPYAQAKLVRCI-AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
P+ K V GR+ VD+R ++G I A+ G I++P G A+GF
Sbjct: 77 --AEPWD--KYVSIADEGRVIGTWVDLREGD-SFGNVYQTIIDASKG--IFVPRGVANGF 129
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 130 QVLSDKAAYTYLVNDYWALELKPKYAFVNYADPNLGIQW--ENLEEAEVSEADKNHPLLK 187
Query: 174 QID 176
+
Sbjct: 188 DVK 190
>gi|22537357|ref|NP_688208.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus agalactiae
2603V/R]
gi|76786998|ref|YP_329899.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus agalactiae
A909]
gi|77405406|ref|ZP_00782500.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus agalactiae
H36B]
gi|22534229|gb|AAN00081.1|AE014246_16 dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus agalactiae
2603V/R]
gi|76562055|gb|ABA44639.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus agalactiae
A909]
gi|77175988|gb|EAO78763.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus agalactiae
H36B]
gi|319745224|gb|EFV97543.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus agalactiae ATCC
13813]
Length = 197
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 19/183 (10%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SF+ T+RGLH
Sbjct: 18 IPGLLEFDIPVRGDNRGWFKENFQKEKMIPLGFPESFFEADKLQNNISFN-KKNTLRGLH 76
Query: 58 FQRPPYAQAKLVRCI-AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
P+ K V GR+ VD+R ++G I A+ G I++P G A+GF
Sbjct: 77 --AEPWD--KYVSIADEGRVIGTWVDLREGD-SFGNVYQTIIDASKG--IFVPRGVANGF 129
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 130 QVLSDKAAYTYLVNDYWALELKPKYAFVNYADPNLGIQW--ENLEEAEVSEADKNHPLLK 187
Query: 174 QID 176
+
Sbjct: 188 DVK 190
>gi|329117726|ref|ZP_08246443.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus
parauberis NCFD 2020]
gi|326908131|gb|EGE55045.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus
parauberis NCFD 2020]
Length = 197
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 17/181 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGLIEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFDEGKLQNNVSFS-RKHVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R ++G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADDGKVLGSWVDLREG-ESFGNVYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D+++++ V + D ++ I W LD VS+ D+N P L
Sbjct: 131 VLSDKVSYSYLVNDYWALDLKPKYAFVNYADPTLGIKWENLDQA--EVSDADKNHPMLKD 188
Query: 175 I 175
+
Sbjct: 189 V 189
>gi|306827472|ref|ZP_07460756.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes ATCC
10782]
gi|304430352|gb|EFM33377.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes ATCC
10782]
Length = 197
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGL 56
I + D+RGWF + + + + +G + F Q+N SFS +RGL
Sbjct: 17 EIPGLLEFDIPVRGDNRGWFKENFQKEKMLPIGFPECFFEEGKLQNNVSFSRQ-HVLRGL 75
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
H P+ + V G++ VD+R T+G I A+ G +++P G A+GF
Sbjct: 76 H--AEPWDKYISV-ADDGKVLGAWVDLREG-ETFGNVYQTVIDASKG--MFVPRGVANGF 129
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D+++++ V + D S+ ITW + VSE D+N P L+
Sbjct: 130 QVLSETVSYSYLVNDYWALDLKPKYAFVNYADPSLGITW--ENLAAAEVSEADKNHPLLS 187
Query: 174 QID 176
+
Sbjct: 188 DVK 190
>gi|225856102|ref|YP_002737613.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
P1031]
gi|1944621|emb|CAB05931.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae]
gi|68642281|emb|CAI32711.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|125857153|emb|CAI30306.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae]
gi|225724625|gb|ACO20477.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pneumoniae
P1031]
gi|301793615|emb|CBW35995.1| dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC [Streptococcus
pneumoniae INV104]
gi|332204382|gb|EGJ18447.1| dTDP-4-dehydrorhamnose 3,5-epimerase family protein [Streptococcus
pneumoniae GA47901]
Length = 198
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKVLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGSWVDLREG-ETFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+ I W + VSE D++ P L
Sbjct: 131 VLSDTVSYSYLVNDYWALELKPKYAFVNYADPSLGIEW--ENLEEADVSEADKHHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|296876234|ref|ZP_06900287.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus parasanguinis
ATCC 15912]
gi|296432739|gb|EFH18533.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus parasanguinis
ATCC 15912]
Length = 197
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGLMEFDIPVRGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNISFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R ++G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADEGKVLGTWVDLREGD-SFGNTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+DI W + VSE D+N P L
Sbjct: 131 VLTDKVAYTYLVNDYWALELKPKYAFVNYADPSLDIQW--ENLEEAEVSEADKNHPLLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|310778611|ref|YP_003966944.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Ilyobacter
polytropus DSM 2926]
gi|309747934|gb|ADO82596.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Ilyobacter
polytropus DSM 2926]
Length = 182
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 62/174 (35%), Positives = 102/174 (58%), Gaps = 5/174 (2%)
Query: 4 NPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPY 63
++++K F+D RG + ++YS + L LG+ F++DN+ S G+IRGLH+QR
Sbjct: 12 KDLKLIKMTSFKDMRGEYIKSYSYRDLSSLGIDTKFLEDNYLIS-KKGSIRGLHYQRDNP 70
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
+AKL+RC+ G I DI VD+R++S TY + +S + L IP GFAHGF++L +T
Sbjct: 71 -EAKLIRCLEGSIMDIVVDLRKDSDTYKKVFKIRLSRGDDLLFSIPDGFAHGFISLTDST 129
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL--PSVSEKDQNLPFLNQI 175
V+YK +++Y + GV+ I + L + + V+EKD++ + I
Sbjct: 130 -VLYKSSNYYYPKDQYGVSIFSSEIGLDKILEEENIENVIVTEKDKSHAKIRDI 182
>gi|326486339|gb|ADZ76172.1| putative nucleotide-sugar epimerase/dehydratase [Campylobacter
jejuni subsp. jejuni]
gi|326486363|gb|ADZ76195.1| putative nucleotide-sugar epimerase/dehydratase [Campylobacter
jejuni subsp. jejuni]
Length = 181
Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 11/168 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I+ KF D RG ++S+ + +L F+ D S IRG+H
Sbjct: 13 LKGVYIITPNKFRDLRGEIWTAFTSEAVDKLLPNGLKFIHDKFIHS-KHNVIRGIHGDVK 71
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y KL C+ G + + VD R++SPTY I+ +N I +P GF +
Sbjct: 72 TY---KLATCVYGEVHQVVVDCRKDSPTYLKHERFIINQDNQKIILVPAGFGNAHYVSSE 128
Query: 122 NTEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK ++ AW D+ I I WP T P +SE+D
Sbjct: 129 TAVYYYKCAYLGEYMDAPDQFTYAWNDERIGIDWP---TNNPILSERD 173
>gi|153875696|ref|ZP_02003381.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Beggiatoa sp. PS]
gi|152067839|gb|EDN66618.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Beggiatoa sp. PS]
Length = 200
Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 59/188 (31%), Positives = 92/188 (48%), Gaps = 27/188 (14%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELG-----LQDVFVQDNHSFSFDCGTIRG 55
+ I ++++K +F D RG+F++ + FVQ N SFS +RG
Sbjct: 9 LTIPDIKVIKFARFCDHRGYFTEPFRKSDFANHPEMSFMKGVEFVQANESFSKSK-VVRG 67
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEI----SANNGLQIYIPTG 111
LHFQ PY KLVR I GR+ DI +DIR+NSPT G ++ ++ A+ I++P G
Sbjct: 68 LHFQWNPY-MGKLVRTIKGRMVDIVLDIRKNSPTQGKIIAYDMPNQAEAHFSEWIWVPPG 126
Query: 112 FAHG-FMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILP---------- 160
FAHG F T + + Y + YS ++G++ + W L D L
Sbjct: 127 FAHGNFFT--EESMIEYFCSGEYSPGCEAGISPIAPDL--DWSLCDQALKKEFDEIAHST 182
Query: 161 -SVSEKDQ 167
+++KD+
Sbjct: 183 QLMTDKDR 190
>gi|332522280|ref|ZP_08398532.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus
porcinus str. Jelinkova 176]
gi|332313544|gb|EGJ26529.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus
porcinus str. Jelinkova 176]
Length = 198
Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGLLEFDIPVRGDNRGWFKENFQKEKMIPLGFPESFFTEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R+ ++G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADQGKVLGTWVDLRQGD-SFGHVYQTIIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+ I W + VS+ D+N P+L
Sbjct: 131 VLSETVSYSYLVNDYWALELKPKYAFVNYADPSLGIQW--ENLEAAEVSDADKNHPYLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|121612136|ref|YP_001001086.1| putative nucleotide-sugar epimerase-dehydratase [Campylobacter
jejuni subsp. jejuni 81-176]
gi|167005983|ref|ZP_02271741.1| putative nucleotide-sugar epimerase-dehydratase [Campylobacter
jejuni subsp. jejuni 81-176]
gi|205356129|ref|ZP_03222896.1| putative nucleotide sugar epimerase dehydratase [Campylobacter
jejuni subsp. jejuni CG8421]
gi|37719584|gb|AAR01889.1| putative dTDP-4-dehydro rhamnose 3,5-epimerase [Campylobacter
jejuni]
gi|37719608|gb|AAR01912.1| putative dTDP-4-dehydro rhamnose 3,5-epimerase [Campylobacter
jejuni]
gi|56797607|emb|CAI38881.1| putative nucleotide-sugar epimerase-dehydratase [Campylobacter
jejuni subsp. jejuni 81-176]
gi|62865925|gb|AAY17134.1| unknown [Campylobacter jejuni subsp. jejuni 81-176]
gi|87249673|gb|EAQ72632.1| putative nucleotide-sugar epimerase-dehydratase [Campylobacter
jejuni subsp. jejuni 81-176]
gi|205345972|gb|EDZ32608.1| putative nucleotide sugar epimerase dehydratase [Campylobacter
jejuni subsp. jejuni CG8421]
Length = 181
Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 51/168 (30%), Positives = 73/168 (43%), Gaps = 11/168 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I+ KF D RG ++SK + +L F+ D S IRG+H
Sbjct: 13 LKGVYIITPNKFRDLRGEIWTAFTSKAVDKLLPNGLKFIHDKFIHS-KHNVIRGIHGDVK 71
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y KL C+ G I + VD R++SPTY + I+ +N I +P GF +
Sbjct: 72 TY---KLATCVYGEIHQVVVDCRKDSPTYLKYEKFIINQDNQQIILVPAGFGNAHYVTSE 128
Query: 122 NTEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ YK D+ AW D+ I I WP T P +SE+D
Sbjct: 129 SAVYYYKCAYKGDYVDAPDQFTYAWNDERIGIDWP---TNSPILSERD 173
>gi|326486386|gb|ADZ76217.1| putative nucleotide-sugar epimerase/dehydratase [Campylobacter
jejuni subsp. jejuni]
Length = 181
Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 11/168 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I+ KF D RG ++S+ + +L F+ D S IRG+H
Sbjct: 13 LKGVYIITPNKFRDLRGEIWTAFTSEAVDKLLPNGLKFIHDKFIHS-KHNVIRGIHGDVK 71
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y KL C+ G + + VD R++SPTY I+ +N I +P GF +
Sbjct: 72 TY---KLATCVYGEVHQVVVDCRKDSPTYLKHERFIINQDNQKIILVPAGFGNAHYVSSE 128
Query: 122 NTEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK ++ AW D+ I I WP T P +SE+D
Sbjct: 129 TAVYYYKCAYLGEYMDAPDQFTYAWNDERIGIDWP---TNSPILSERD 173
>gi|146318954|ref|YP_001198666.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus suis 05ZYH33]
gi|146321162|ref|YP_001200873.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus suis 98HAH33]
gi|253752023|ref|YP_003025164.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus suis SC84]
gi|253753848|ref|YP_003026989.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus suis P1/7]
gi|253755276|ref|YP_003028416.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus suis BM407]
gi|33357526|pdb|1NXM|A Chain A, The High Resolution Structures Of Rmlc From Streptococcus
Suis
gi|33357527|pdb|1NXM|B Chain B, The High Resolution Structures Of Rmlc From Streptococcus
Suis
gi|33357534|pdb|1NYW|A Chain A, The High Resolution Structures Of Rmlc From Streptoccus
Suis In Complex With Dtdp-D-Glucose
gi|33357535|pdb|1NYW|B Chain B, The High Resolution Structures Of Rmlc From Streptoccus
Suis In Complex With Dtdp-D-Glucose
gi|33357540|pdb|1NZC|A Chain A, The High Resolution Structures Of Rmlc From Streptococcus
Suis In Complex With Dtdp-D-Xylose
gi|33357541|pdb|1NZC|B Chain B, The High Resolution Structures Of Rmlc From Streptococcus
Suis In Complex With Dtdp-D-Xylose
gi|33357542|pdb|1NZC|C Chain C, The High Resolution Structures Of Rmlc From Streptococcus
Suis In Complex With Dtdp-D-Xylose
gi|33357543|pdb|1NZC|D Chain D, The High Resolution Structures Of Rmlc From Streptococcus
Suis In Complex With Dtdp-D-Xylose
gi|118138554|pdb|2IXL|A Chain A, Rmlc S. Suis With Dtdp-Rhamnose
gi|118138555|pdb|2IXL|B Chain B, Rmlc S. Suis With Dtdp-Rhamnose
gi|118138556|pdb|2IXL|C Chain C, Rmlc S. Suis With Dtdp-Rhamnose
gi|118138557|pdb|2IXL|D Chain D, Rmlc S. Suis With Dtdp-Rhamnose
gi|23504818|emb|CAD49091.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus suis]
gi|145689760|gb|ABP90266.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus suis 05ZYH33]
gi|145691968|gb|ABP92473.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus suis 98HAH33]
gi|251816312|emb|CAZ51941.1| putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
suis SC84]
gi|251817740|emb|CAZ55491.1| putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
suis BM407]
gi|251820094|emb|CAR46373.1| putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
suis P1/7]
gi|292558607|gb|ADE31608.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus suis GZ1]
gi|319758390|gb|ADV70332.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus suis JS14]
Length = 197
Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R T+G I A+ I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADGGKVLGTWVDLREG-ETFGNTYQTVIDAS--KSIFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+DI W + VSE D+N PFL
Sbjct: 131 VLSDFVAYSYLVNDYWALELKPKYAFVNYADPSLDIKW--ENLEEAEVSEADENHPFLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|326486404|gb|ADZ76234.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni
subsp. jejuni]
gi|326486472|gb|ADZ76299.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni
subsp. jejuni]
Length = 181
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 72/168 (42%), Gaps = 11/168 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I+ KF D RG ++SK + +L F+ D S IRG+H
Sbjct: 13 LKGVYIITPNKFRDLRGEIWTAFTSKAVDKLLPNGLKFIHDKFIHS-KHNVIRGIHGDVK 71
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y KL C+ G + + VD R++SPTY I+ +N I +P GF +
Sbjct: 72 TY---KLATCVYGEVHQVVVDCRKDSPTYLKHERFIINQDNQQIILVPAGFGNAHYVSSE 128
Query: 122 NTEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ YK ++ AW D+ I I WP T P +SE+D
Sbjct: 129 SAVYYYKCAYLGEYMDAHDQFTYAWNDERIGIDWP---TNSPILSERD 173
>gi|148925615|ref|ZP_01809303.1| putative nucleotide-sugar epimerase/dehydratase [Campylobacter
jejuni subsp. jejuni CG8486]
gi|145845625|gb|EDK22716.1| putative nucleotide-sugar epimerase/dehydratase [Campylobacter
jejuni subsp. jejuni CG8486]
Length = 181
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 72/168 (42%), Gaps = 11/168 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I+ KF D RG ++S+ + +L F+ D S IRG+H
Sbjct: 13 LKGVYIITPNKFRDLRGEIWTAFTSEAIDKLLPNGLKFIHDKFIHS-KHNVIRGIHGDVK 71
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y KL C+ G + + VD R++SPTY I+ +N I +P GF +
Sbjct: 72 TY---KLATCVYGEVHQVVVDCRKDSPTYLKHERFIINQDNQQIILVPAGFGNAHYVSSE 128
Query: 122 NTEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ YK ++ AW D+ I I WP T P +SE+D
Sbjct: 129 SAVYYYKCAYLGEYMDAHDQFTYAWNDERIGIDWP---TNSPILSERD 173
>gi|225868323|ref|YP_002744271.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus equi subsp.
zooepidemicus]
gi|225701599|emb|CAW98850.1| putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
equi subsp. zooepidemicus]
Length = 199
Score = 150 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 19 IPGLLEFDIPVRGDNRGWFKENFQKEKMIPLGFPEQFFAAGKLQNNISFS-RKHVLRGLH 77
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R ++G I A+ G I++P G A+GF
Sbjct: 78 --AEPWDKYISV-ADEGKVLGAWVDLREGD-SFGHTYQTVIDASKG--IFVPRGVANGFQ 131
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E V + D S+ I W + VSE D++ PFL
Sbjct: 132 VLTDKVAYTYLVNDYWALELKPKYAFVNYADPSLGIAW--ENLEQAEVSEADKSHPFLEA 189
Query: 175 ID 176
+
Sbjct: 190 VK 191
>gi|313890169|ref|ZP_07823804.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus
pseudoporcinus SPIN 20026]
gi|313121530|gb|EFR44634.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus
pseudoporcinus SPIN 20026]
Length = 198
Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGLLEFDIPVRGDNRGWFKENFQKEKMIPLGFPESFFTAGKLQNNVSFS-RKNVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R+ ++G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADQGKVLGTWVDLRQGD-SFGHIYQTIIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D+++++ V + D S+ I W + VS+ D+N PFL
Sbjct: 131 VLSETVSYSYLVNDYWALDLKPKYAFVNYADPSLGIQW--ENLEAAEVSDADKNHPFLKD 188
Query: 175 ID 176
+
Sbjct: 189 VK 190
>gi|116627495|ref|YP_820114.1| dTDP-4-dehydrorhamnose 3,5-epimerase or related enzyme
[Streptococcus thermophilus LMD-9]
gi|116100772|gb|ABJ65918.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus thermophilus
LMD-9]
gi|312278013|gb|ADQ62670.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus thermophilus
ND03]
Length = 191
Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 10/177 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ + I++ + D RG + + ++ + Q N + + G +RGLH +
Sbjct: 14 EIDGLYIIQPKTVTDERGTVRELFRFSAYSDILPSTTWSQINLTQT-KKGAVRGLHAE-- 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ +KLV G F + VDIR +S ++G V++++ G+Q+++P G +GF LE
Sbjct: 71 --SMSKLVTVAKGSAFGVYVDIRNDSTSFGKIVTVDLYP--GVQVFVPNGVCNGFQALEN 126
Query: 122 NTEVIYKVTDFYSVEHDS-GVAWQDKSIDITWPLL--DTILPSVSEKDQNLPFLNQI 175
NTE +Y + ++ + I WP+ L +SEKD P L I
Sbjct: 127 NTEYLYFFDSEWIPGMSGQALSPLASDLKIEWPIPINPNNLEQISEKDLKAPTLQDI 183
>gi|225870742|ref|YP_002746689.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus equi subsp.
equi 4047]
gi|225700146|emb|CAW94280.1| putative dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Streptococcus
equi subsp. equi 4047]
Length = 199
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 19 IPGLLEFDIPVRGDNRGWFKENFQKEKMIPLGFPEQFFAAGKLQNNISFS-RKHVLRGLH 77
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R ++G I A+ G I++P G A+GF
Sbjct: 78 --AEPWDKYISV-ADEGKVLGAWVDLREGD-SFGHTYQTVIDASKG--IFVPRGVANGFQ 131
Query: 118 TLEMNTEVIYKVTDFYSVEH---DSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
L Y V D++++E + V + D S+ I W VSE D++ PFL
Sbjct: 132 VLTDKVAYTYLVNDYWALELKQKYAFVNYADPSLGIAW--ESLEQAEVSEADKSHPFLEA 189
Query: 175 ID 176
+
Sbjct: 190 VK 191
>gi|254520585|ref|ZP_05132641.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium sp. 7_2_43FAA]
gi|226914334|gb|EEH99535.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium sp. 7_2_43FAA]
Length = 181
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 20/187 (10%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQT-------YSSKLLKELGLQDVFVQDNHSFSFDCGTI 53
+++ ++ ++ ++ GL F ++ ++ G +
Sbjct: 7 LDVEGCYLITPTV-------SMESTCDLIKIFNDTQFNIYGLSTEFKEEYYAI-AKPGVV 58
Query: 54 RGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFA 113
RG+HFQ PP KL+ CI G I D+ VD+R+ S TYG + +E++ +N IY+P G A
Sbjct: 59 RGMHFQLPPEEHDKLITCIIGEIQDVVVDLRKESKTYGKYTMVELNESNKNLIYVPRGCA 118
Query: 114 HGFMTLE-MNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
HG+ + + YKVT + E G+ W S++I W + + SE D+ P
Sbjct: 119 HGYYIKGKKDALIYYKVTKPFIRELRGGIHWD--SLNIPWDFSNEVEVE-SE-DKVWPKF 174
Query: 173 NQIDSPF 179
+SPF
Sbjct: 175 EGFNSPF 181
>gi|305431506|ref|ZP_07400683.1| possible dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter coli
JV20]
gi|304445428|gb|EFM38064.1| possible dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter coli
JV20]
Length = 180
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 9/167 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V I+ KF D RG ++ + L ++ + + + + + +RG+H
Sbjct: 13 LKGVYIITPNKFRDLRGEIWTAFTEEDLGDIVPKGLKFKHDKFINSHFNVLRGIHGDIKT 72
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ KLV C+ G + + VD R++SPTY W I+ +N I +P + +
Sbjct: 73 W---KLVTCVYGEVHQVVVDCRKDSPTYLKWEKFIINQDNQQLILLPPNMGNSHYVSSKD 129
Query: 123 TEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK+ ++ AW D+ I I WP P +SE+D
Sbjct: 130 AVYYYKLAYEGEYLDAPDQFTYAWNDERIGIDWPTKS---PILSERD 173
>gi|86152037|ref|ZP_01070250.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Campylobacter jejuni
subsp. jejuni 260.94]
gi|315124864|ref|YP_004066868.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
gi|56783464|emb|CAI38717.1| putative nucleotidyl-sugar epimerase [Campylobacter jejuni]
gi|85841145|gb|EAQ58394.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Campylobacter jejuni
subsp. jejuni 260.94]
gi|315018586|gb|ADT66679.1| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
Length = 181
Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 51/170 (30%), Positives = 74/170 (43%), Gaps = 15/170 (8%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL---GLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+ V I+ KF D RG ++ + + +L GL+ F+ D S IRG+H
Sbjct: 13 LKGVYIITPNKFRDLRGEIWTAFTDEAINKLLPSGLK--FIHDKFIHS-KHNVIRGIHGD 69
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Y KL C+ G I + VD R++SPTY I+ +N I +P GF +
Sbjct: 70 VKTY---KLATCVYGEIHQVVVDCRKDSPTYLKHERFIINQDNQQIILVPAGFGNAHYVS 126
Query: 120 EMNTEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ YK D+ AW D+ I I WP T P +SE+D
Sbjct: 127 SESAVYYYKCAYKGDYADAPDQFTYAWNDERIGIDWP---TNSPILSERD 173
>gi|326407909|gb|ADZ64979.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactococcus lactis subsp.
lactis CV56]
Length = 194
Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 12/179 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDV--FVQDNHSFSFDCGTIRGLHFQ 59
IN ++++ ++ D+RG + Y E V + Q N + + G +RGLH +
Sbjct: 16 KINGLQVINSKMVTDNRGTVRELYRQSSYSETLPSSVTSWKQVNLTRT-KRGAVRGLHGE 74
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
A +KLV G F + VD R S T G +++ I+ G+Q+++P G +GF +L
Sbjct: 75 ----AMSKLVTVAHGSAFGVYVDTRPGSETIGKVMTVNITP--GVQVFVPQGVCNGFQSL 128
Query: 120 EMNTEVIYKVTDFYSVEHDS-GVAWQDKSIDITWP--LLDTILPSVSEKDQNLPFLNQI 175
+ +TE +Y + ++ + D + I WP + L +SEKD P L +I
Sbjct: 129 DDDTEYLYFFDNEWNPRMSGVALTPLDADLKIDWPIQIDPGNLEQISEKDSRAPRLREI 187
>gi|229578405|ref|YP_002836803.1| dTDP-4-dehydrorhamnose 35-epimerase related [Sulfolobus islandicus
Y.G.57.14]
gi|228009119|gb|ACP44881.1| dTDP-4-dehydrorhamnose 35-epimerase related [Sulfolobus islandicus
Y.G.57.14]
Length = 120
Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 54/124 (43%), Positives = 78/124 (62%), Gaps = 7/124 (5%)
Query: 53 IRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGF 112
+RGLH+Q PP Q K+V I GRI D+AVDIR++S ++G +V E+S NN ++IP GF
Sbjct: 1 MRGLHYQLPPKEQGKIVTVIKGRILDVAVDIRKSSESFGKYVYAELSENNHYMLWIPPGF 60
Query: 113 AHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
AHGF LE +T V + + YS ++ + + SI I WP+ + + VSEKD P L
Sbjct: 61 AHGFQALEESTIVYFITYNEYSPLNERCINY---SI-INWPIKNIV---VSEKDAKCPPL 113
Query: 173 NQID 176
N+ +
Sbjct: 114 NKAE 117
>gi|77411729|ref|ZP_00788067.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus agalactiae
CJB111]
gi|77162237|gb|EAO73210.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus agalactiae
CJB111]
Length = 197
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 19/183 (10%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SF+ T+RGLH
Sbjct: 18 IPGLLEFDIPVRGDNRGWFKENFQKEKMIPLGFPESFFEADKLQNNISFN-KKNTLRGLH 76
Query: 58 FQRPPYAQAKLVRCI-AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
P+ K V GR+ VD+R ++G I A+ G I++P G A+GF
Sbjct: 77 --AEPWD--KYVSIADEGRVIGTWVDLREGD-SFGNVYQTIIDASKG--IFVPRGVANGF 129
Query: 117 MTLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLN 173
L Y V D++++E V + D ++ I W + VSE D+N P L
Sbjct: 130 QVLSDKAAYTYLVNDYWALELKPKYAFVNYADSNLGIQW--ENLEEAEVSEADKNHPLLK 187
Query: 174 QID 176
+
Sbjct: 188 DVK 190
>gi|326486425|gb|ADZ76254.1| putative nucleotide-sugar epimerase/dehydratase [Campylobacter
jejuni subsp. jejuni]
Length = 181
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 72/168 (42%), Gaps = 11/168 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I+ KF D RG ++S+ + L F+ D S IRG+H
Sbjct: 13 LKGVYIITPNKFRDLRGEIWTAFTSEAIDNLLPNGLKFIHDKFIHS-KHNVIRGIHGDVK 71
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Y KL C+ G I + VD R++SPTY + I+ +N I +P GF +
Sbjct: 72 TY---KLATCVYGEIHQVVVDCRKDSPTYLKYEKFIINQDNQQIILVPAGFGNAHYVSSE 128
Query: 122 NTEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
+ YK D+ AW D+ I I WP T P +SE+D
Sbjct: 129 SAVYYYKCAYKGDYADAPDQFTYAWNDERIGIDWP---TNSPILSERD 173
>gi|241888608|ref|ZP_04775915.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Gemella haemolysans
ATCC 10379]
gi|241864631|gb|EER69006.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Gemella haemolysans
ATCC 10379]
Length = 187
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 14/179 (7%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV----QDNHSFSFDCGTIRGLH 57
I+ + +L + D RG+F + + L + G+ + F Q+N S S GT+RG+H
Sbjct: 9 EIDGLLVLTSPLHHDDRGYFLENWKKNDLIKFGVPEDFFDNDLQNNVSVSNK-GTLRGMH 67
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
Q AKL+ G VD+RR S TY + G+ +++P G A+G
Sbjct: 68 CQ----GWAKLMTVAWGTFRMCFVDLRRESTTYKKVTC--LDVKPGMVVFVPEGVANGAQ 121
Query: 118 TLEMNTEVIYKVTDFYSV-EHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQI 175
+L N + Y VT +Y+ E G+ D +++ W + T P +SEKD N +++
Sbjct: 122 SLVENGILNYIVTGYYNPNEKYLGITPIDLKLNLPWDM--TTTPIISEKDMNSLSYDEV 178
>gi|86150038|ref|ZP_01068266.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88596400|ref|ZP_01099637.1| putative nucleotide-sugar epimerase/dehydratase [Campylobacter
jejuni subsp. jejuni 84-25]
gi|218563034|ref|YP_002344813.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni
subsp. jejuni NCTC 11168]
gi|85839484|gb|EAQ56745.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88191241|gb|EAQ95213.1| putative nucleotide-sugar epimerase/dehydratase [Campylobacter
jejuni subsp. jejuni 84-25]
gi|112360740|emb|CAL35539.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni
subsp. jejuni NCTC 11168]
gi|315928031|gb|EFV07350.1| dTDP-4-dehydrorhamnose 3,5-epimerase family protein [Campylobacter
jejuni subsp. jejuni DFVF1099]
gi|315928953|gb|EFV08204.1| dTDP-4-dehydrorhamnose 3,5-epimerase family protein [Campylobacter
jejuni subsp. jejuni 305]
Length = 181
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 9/167 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V I+ KF D RG ++ + L +L + + + + +RG+H
Sbjct: 13 LKGVYIITPNKFRDLRGEIWTAFTDEYLSKLVPDGIKFKHDKFINSHFNVLRGIHGDVKT 72
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y KLV C+ G + + VD R++SPTY W IS N I +P +
Sbjct: 73 Y---KLVTCVYGEVHQVVVDCRKDSPTYLKWEKFIISYKNQQLILLPPNMGNSHYVSSKE 129
Query: 123 TEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK+ ++ AW D+ I I WP T P +S++D
Sbjct: 130 AVYYYKLAYEGEYMDAPDQFTYAWNDERIGIDWP---TNTPILSDRD 173
>gi|291617820|ref|YP_003520562.1| RfbC [Pantoea ananatis LMG 20103]
gi|291152850|gb|ADD77434.1| RfbC [Pantoea ananatis LMG 20103]
Length = 127
Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 44/106 (41%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELG-LQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I++ + D RG+F +T+ + +EL FVQDN+S S +RGLHFQ+
Sbjct: 7 KIADVKIIQPAVYGDDRGFFLETFEKRRYQELLETHLEFVQDNYSRSGR-HVLRGLHFQK 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQI 106
Q KLVR + G +FD+AVDIR SPT+G W S+ +S N
Sbjct: 66 TEP-QGKLVRVVRGEVFDVAVDIRPGSPTFGQWESILLSEENKNAA 110
>gi|315639162|ref|ZP_07894327.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter upsaliensis
JV21]
gi|315480757|gb|EFU71396.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter upsaliensis
JV21]
Length = 177
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 49/170 (28%), Positives = 72/170 (42%), Gaps = 11/170 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V I+K KF+D RG ++ + L L F D + IRG+H
Sbjct: 13 LKGVFIIKPNKFKDLRGEIWTAFTQEQLAHLA-AVPFKHDKF-ITSKKDVIRGIHGDTKT 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y KL C+ G I + VD R +SPTY + S I+ N L I +P GF + +
Sbjct: 71 Y---KLATCLYGEILQVVVDCREDSPTYLKYESFVINPQNQLLILVPKGFGNAHLVRSNE 127
Query: 123 TEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
YK ++ E AW D+ I + W + P +SE+D
Sbjct: 128 AVYYYKCAYEGEYVDAEEQFTYAWNDERIGVKWGIEK---PILSERDMQA 174
>gi|220934483|ref|YP_002513382.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thioalkalivibrio sp.
HL-EbGR7]
gi|219995793|gb|ACL72395.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thioalkalivibrio sp.
HL-EbGR7]
Length = 124
Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats.
Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V +++ R F D RG+F++ +S E+ + FVQDN S S G +RG+H Q P
Sbjct: 12 IDGVLVIEPRVFGDHRGFFTEYWSQPRYAEVVRHEQFVQDNLSCS-RKGVLRGVHVQN-P 69
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIY 107
Q LV + G +FD+ VDI SPT+G W + +S N + Y
Sbjct: 70 NPQGNLVYVLYGEVFDLVVDIHLGSPTFGQWYGVTLSVENRKRFY 114
>gi|283955038|ref|ZP_06372545.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni
subsp. jejuni 414]
gi|283793536|gb|EFC32298.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni
subsp. jejuni 414]
Length = 181
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 9/167 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V I+ KF D RG ++ + L +L + + + + +RG+H
Sbjct: 13 LKGVYIITPNKFRDLRGEIWTAFTDEHLSKLVPDGIKFKHDKFINSHFNVLRGIHGDVKT 72
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y KLV C+ G + + VD R++S TY W IS N I +P +
Sbjct: 73 Y---KLVTCVYGEVHQVVVDCRKDSSTYLKWEKFIISHKNQQLILLPPNMGNSHYVSSKE 129
Query: 123 TEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK+ ++ AW D+ I I WP T P +SE+D
Sbjct: 130 AVYYYKLAYEGEYMDAPDQFTYAWNDERIGIDWP---TNTPILSERD 173
>gi|326486489|gb|ADZ76315.1| putative nucleotide-sugar epimerase/dehydratase [Campylobacter
jejuni subsp. jejuni]
Length = 181
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 47/167 (28%), Positives = 70/167 (41%), Gaps = 9/167 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+N V I+ KF D RG ++ + L L + + + + +RG+H
Sbjct: 13 LNGVYIITPNKFSDLRGDIWTAFTDEYLSNLVPNGIKFKHDKFINSHFNVLRGIHGDVKT 72
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y KLV C+ G + + VD R++SPTY W IS N I +P +
Sbjct: 73 Y---KLVTCVYGEVHQVVVDCRKDSPTYLKWEKFIISPRNQQLILLPPNMGNSHYVSSKE 129
Query: 123 TEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK+ ++ AW DK I I WP T P +SE+D
Sbjct: 130 AVYYYKLAYKGEYLDAPDQFTYAWNDKRIAIDWP---TNSPILSERD 173
>gi|153952059|ref|YP_001397852.1| putative nucleotidyl-sugar epimerase [Campylobacter jejuni subsp.
doylei 269.97]
gi|152939505|gb|ABS44246.1| putative nucleotidyl-sugar epimerase [Campylobacter jejuni subsp.
doylei 269.97]
Length = 177
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 73/167 (43%), Gaps = 11/167 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V I+K KF+D RG ++ + L L F D + IRG+H
Sbjct: 13 LKGVFIIKPNKFKDLRGEIWTAFTQEQLAHLA-PVPFKHDKF-ITSKKDVIRGIHGDTKT 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y KL C+ G I + VD R +SPTY + S I+ N L I +P GF + +
Sbjct: 71 Y---KLATCLYGEILQVVVDCREDSPTYLKYESFVINPQNQLLILVPKGFGNAHLVRSNE 127
Query: 123 TEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK ++ E AW D+ I + W + P++SE+D
Sbjct: 128 AVYYYKCAYEGEYVDAEEQFTYAWNDERIGVKWGVEK---PTLSERD 171
>gi|57505201|ref|ZP_00371130.1| dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase, putative
[Campylobacter upsaliensis RM3195]
gi|57016337|gb|EAL53122.1| dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase, putative
[Campylobacter upsaliensis RM3195]
Length = 177
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 11/167 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V I+K KF+D RG ++ + L L F D + IRG+H
Sbjct: 13 LKGVFIIKPNKFKDLRGEIWTAFTQEQLVHLA-PVPFKHDKF-ITSKKDVIRGIHGDTKT 70
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Y KL C+ G I + VD R +SPTY + S I+ N L I +P GF + +
Sbjct: 71 Y---KLATCLYGEILQVVVDCREDSPTYLKYESFVINPQNQLLILVPKGFGNAHLVRSNE 127
Query: 123 TEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK ++ E AW D+ I + W + P +SE+D
Sbjct: 128 AVYYYKCAYEGEYVDAEEQFTYAWNDERIGVKWGVEK---PILSERD 171
>gi|317502876|ref|ZP_07960975.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella salivae DSM 15606]
gi|315666012|gb|EFV05580.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella salivae DSM 15606]
Length = 102
Score = 144 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 41/100 (41%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Query: 77 FDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVE 136
D+AVDIR++SPT+G +V +E+S N Q++IP GFAHGF+ L YKV + Y+ +
Sbjct: 1 MDVAVDIRKSSPTFGKYVMVELSEENKRQLFIPRGFAHGFLVLSDEAIFTYKVDNVYAPQ 60
Query: 137 HDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
H++ + W D+ I I WP+ D+ SEKD L +
Sbjct: 61 HEASIRWNDEQIHIEWPI-DSKDVLTSEKDLKACSLQDAE 99
>gi|153951869|ref|YP_001397849.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni subsp.
doylei 269.97]
gi|152939315|gb|ABS44056.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni subsp.
doylei 269.97]
Length = 180
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 50/171 (29%), Positives = 72/171 (42%), Gaps = 12/171 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V I+ FED RG + K L + FV D + S +RG+H
Sbjct: 13 LSGVYIITPNFFEDFRGEIWSVFEDKAFVNLLPKGLNFVLDKFTLS-KPNVLRGIHGDHK 71
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ KLV C++G I + VD R+ SPTY + S IS+ I IP F + L
Sbjct: 72 SW---KLVTCVSGEIQQVVVDCRKESPTYLKYESFNISSKQKKLILIPPFFGNAHYVLGD 128
Query: 122 -NTEVIYK---VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YK ++ E AW D+ I I W + P +SE+D
Sbjct: 129 KEALYYYKWAYEGEYVDAEDQFTYAWNDERIGIKWQGEN---PILSERDLK 176
>gi|57505644|ref|ZP_00371571.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter upsaliensis
RM3195]
gi|57016191|gb|EAL52978.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter upsaliensis
RM3195]
Length = 180
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 50/171 (29%), Positives = 72/171 (42%), Gaps = 12/171 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V I+ FED RG + K L + FV D + S +RG+H
Sbjct: 13 LSGVYIITPNFFEDFRGEIWSVFEDKAFVNLLPKGLNFVLDKFTLS-KSNVLRGIHGDHK 71
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ KLV C++G I + VD R+ SPTY + S IS+ I IP F + L
Sbjct: 72 SW---KLVTCVSGEIQQVVVDCRKESPTYLKYESFNISSKQKKLILIPPFFGNAHYVLGD 128
Query: 122 -NTEVIYK---VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YK ++ E AW D+ I I W + P +SE+D
Sbjct: 129 KEALYYYKWAYEGEYVDAEDQFTYAWNDERIGIKWQGEN---PILSERDLK 176
>gi|319778859|ref|YP_004129772.1| dTDP-glucose 4,6-dehydratase [Taylorella equigenitalis MCE9]
gi|317108883|gb|ADU91629.1| dTDP-glucose 4,6-dehydratase [Taylorella equigenitalis MCE9]
Length = 499
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 57/173 (32%), Positives = 96/173 (55%), Gaps = 11/173 (6%)
Query: 6 VRILKTRKFEDSRGWFSQTYSSKLLKELGLQD--VFVQDNHSFSFDCGTIRGLHFQRPPY 63
+L K+ D+RG + S + L L Q FVQ+N + S GT+RGLHFQR
Sbjct: 331 AHLLHFPKYTDTRG----SVSPRELHALHNQTGTNFVQENFTKSV-LGTLRGLHFQRE-R 384
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
QAKL++ + G+I D+ VD+R +S +G W S ++ G +++P G+AHG++TL ++
Sbjct: 385 PQAKLIQVLEGKILDVVVDLRPHSDEFGTWKSFKL--KQGDSLFVPAGYAHGYLTLSESS 442
Query: 124 EVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL-DTILPSVSEKDQNLPFLNQI 175
V+YK++DFY + + + D+ ++I W +S KD+ ++
Sbjct: 443 YVLYKLSDFYDPKDQYSIRYDDQYLNIDWGGEISADDYVLSPKDRQGMTWSEF 495
>gi|255025971|ref|ZP_05297957.1| hypothetical protein LmonocytFSL_05760 [Listeria monocytogenes FSL
J2-003]
Length = 99
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 3/100 (3%)
Query: 83 IRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVA 142
+R+ SPTYG W +S N Q+ +P GFAHGF T+ N V+YKV YS E+D+G+A
Sbjct: 1 MRKGSPTYGEWEGYILSEANKHQLLVPQGFAHGFCTITENVNVLYKVDQLYSPENDAGIA 60
Query: 143 WQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
+ D ++ITWP T +S+KD P L ++ F ++
Sbjct: 61 YDDPDLNITWP---TDKLILSDKDTKHPRLKDAENNFVWE 97
>gi|118588742|ref|ZP_01546150.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stappia aggregata IAM 12614]
gi|118438728|gb|EAV45361.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Stappia aggregata IAM 12614]
Length = 188
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 12/182 (6%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I V + D RG F++ Y L +Q N + T+RG+H +
Sbjct: 17 SIEGVIVHDLVAHIDERGSFTEIYRETWLT----DFKSIQWNI-VTSREDTLRGVHVHK- 70
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ +AGR+ DIRR+SPT+G L+++ + + IP G HGF E
Sbjct: 71 --DHYDYLMILAGRMLLGLHDIRRDSPTFGTSEILDLTDEHRRAVSIPPGVCHGFYYPEA 128
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+T +Y V+ ++ D G + +++ WP D P +S++D+ Q+ F
Sbjct: 129 STH-LYSVSTYFDPRDDLGCKFDCPELNLAWPTKD---PVLSDRDRTADSYAQMLDKFYL 184
Query: 182 DG 183
D
Sbjct: 185 DA 186
>gi|328471513|gb|EGF42401.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus MTCC
5462]
Length = 181
Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 12/169 (7%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV--QDNHSFSFDCGTIRGLHFQ 59
I+ ++I+ + D RG + + ++ + Q N + + G +RGLH +
Sbjct: 14 EIDGLKIIHVKMVTDERGTVRELFRQSQHSQVLVNPNMAWKQVNLTRT-KRGAVRGLHGE 72
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
A +KLV G F VD RR+SPT G V++ ++ G+Q+++P G +GF +
Sbjct: 73 ----AMSKLVTVAHGEAFGAYVDTRRDSPTLGSVVTVRLTP--GVQVFVPQGVCNGFQAV 126
Query: 120 EMNTEVIYKVTDFYSVEHDS-GVAWQDKSIDITWP--LLDTILPSVSEK 165
+TE +Y + + + D + I WP + L +S+K
Sbjct: 127 ADDTEYLYFFDNEWQKGMTGVALTPLDPDLGIEWPIAIKPDNLAQISKK 175
>gi|298490026|ref|YP_003720203.1| dTDP-4-dehydrorhamnose 3,5-epimerase ['Nostoc azollae' 0708]
gi|298231944|gb|ADI63080.1| dTDP-4-dehydrorhamnose 3,5-epimerase ['Nostoc azollae' 0708]
Length = 110
Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 67/106 (63%), Gaps = 3/106 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ V +++ + D RG+F ++Y+ ++ +++G+ FVQDNHS S +RGLH+Q
Sbjct: 7 EISDVLLIEPQILGDKRGFFYESYNERVFLEKVGILSHFVQDNHSRSIK-DVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQI 106
Q KLVR + G +FD+AVD+R+ S T+G V + +SA N Q+
Sbjct: 66 E-KPQGKLVRVVVGSVFDVAVDLRKISATFGQSVGVCLSAENKDQL 110
>gi|289766572|ref|ZP_06525950.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. D11]
gi|289718127|gb|EFD82139.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. D11]
Length = 119
Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
++ + G I DI VD+R NS T+G ++++E+++ N ++IP G AHGF+TLE NTE+ Y
Sbjct: 1 MINILKGSILDIVVDLRENSETFGKYLAIELNSKNKKVLFIPKGVAHGFLTLEDNTEIFY 60
Query: 128 KVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPFLNQID 176
K +FY+ + + G+ W DK ++I+W + +SEKD+ +
Sbjct: 61 KCDNFYNPQSEIGIIWNDKDLNISWNFKKYGINENELIISEKDKKNMSFKEYK 113
>gi|328478990|gb|EGF48483.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus rhamnosus
MTCC 5462]
Length = 84
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 40/82 (48%), Positives = 57/82 (69%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F D+RG+F++TY+ + E G+++ F QDN S S + G +RG+H+Q PYAQ KLVR +
Sbjct: 2 FGDNRGFFTETYTREKFVEAGIKNDFNQDNQSLSAEAGVLRGMHYQMAPYAQTKLVRVVT 61
Query: 74 GRIFDIAVDIRRNSPTYGCWVS 95
G + D+ VDIR+ SPTYG W
Sbjct: 62 GVVEDVLVDIRKGSPTYGQWEG 83
>gi|303288449|ref|XP_003063513.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455345|gb|EEH52649.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 549
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 7/168 (4%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSF-DCGTIRGLHFQRPPYAQAKLVRCIA 73
D RG+ Y E + S S G +RGL +++LV +
Sbjct: 25 RDHRGYTQDLYRDDSYPEHVQPPEPGHRHVSLSHSHRGVLRGLLVTY----RSRLVSVVK 80
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G I+D+ VD R S TY W +S+ N Q+++P G AHGF+ LE +V+ +
Sbjct: 81 GAIYDVIVDCRPESRTYRRWCVAIVSSANRRQVFVPGGCAHGFLVLED-ADVLVHSSTRE 139
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTI-LPSVSEKDQNLPFLNQIDSPFE 180
E++ + +D ++ + WP LD + S++D P L Q F
Sbjct: 140 DPENELTINARDPALGVYWPRLDDVREAITSDEDGAAPPLLQAHDRFV 187
>gi|315639156|ref|ZP_07894322.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter upsaliensis
JV21]
gi|315480793|gb|EFU71431.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter upsaliensis
JV21]
Length = 180
Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 12/171 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
++ V I+ FED RG + K L + FV D + S +RG+H
Sbjct: 13 LSGVYIIMPNFFEDFRGEIWSVFEDKAFVNLLPKGLNFVLDKFTLS-KPNVLRGIHGDHK 71
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ KLV C++G I + VD R+ SPTY + S IS+ I IP F + L
Sbjct: 72 SW---KLVTCVSGEIQQVVVDCRKESPTYLKYESFNISSKQKKLILIPPFFGNAHYVLGD 128
Query: 122 -NTEVIYK---VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
YK ++ + A+ D+ I I W P +SE+D
Sbjct: 129 KEALYYYKWAYEGEYMDADAQFTYAYNDERIGIKW---QGEKPILSERDLK 176
>gi|195978346|ref|YP_002123590.1| dTDP-4-Keto-6-Deoxyglucose-3 5-epimerase RmlC [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|195975051|gb|ACG62577.1| dTDP-4-Keto-6-Deoxyglucose-3 5-epimerase RmlC [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 180
Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 17/170 (10%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLH 57
I + D+RGWF + + + + LG + F Q+N SFS +RGLH
Sbjct: 18 IPGLLEFDIPVRGDNRGWFKENFQKEKMIPLGFPEQFFAAGKLQNNISFS-RKHVLRGLH 76
Query: 58 FQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P+ + V G++ VD+R ++G I A+ G I++P G A+GF
Sbjct: 77 --AEPWDKYISV-ADEGKVLGAWVDLREGD-SFGHTYQTVIDASKG--IFVPRGVANGFQ 130
Query: 118 TLEMNTEVIYKVTDFYSVEHDS---GVAWQDKSIDITWPLLDTILPSVSE 164
L Y V D++++E V + D S+ I W + VSE
Sbjct: 131 VLTDKVAYTYLVNDYWALELKPKYAFVNYADPSLGIAW--ENLEQAEVSE 178
>gi|123502962|ref|XP_001328402.1| dTDP-4-dehydrorhamnose 3,5-epimerase family protein [Trichomonas
vaginalis G3]
gi|121911345|gb|EAY16179.1| dTDP-4-dehydrorhamnose 3,5-epimerase family protein [Trichomonas
vaginalis G3]
Length = 347
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 41 QDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISA 100
Q S S IRGLH KLV+C G+ FD+ VD+R +SPT+ W I
Sbjct: 48 QITVSRS-QKNVIRGLHCS----PHHKLVQCPTGKAFDVVVDLRPDSPTFLQWDGHWIDR 102
Query: 101 NNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL-DTIL 159
+ ++IP AHGF E +T ++Y ++ E D + + DK++++ WP D
Sbjct: 103 THH--MFIPPFCAHGFFASEDDTAILYLQGGCFAPELDFSLNYLDKTVNVDWPKPIDADD 160
Query: 160 PSVSEKDQNLPFLNQI 175
+S KD+ P L++
Sbjct: 161 YVISPKDRGNPMLDEA 176
>gi|91069858|gb|ABE10789.1| dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase, putative [uncultured
Prochlorococcus marinus clone ASNC1363]
Length = 166
Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 70/168 (41%), Gaps = 14/168 (8%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+I+K +F D RG TY +K + F D S S IRG+H+
Sbjct: 9 KIQGVKIIKYDRFIDLRGSIWTTYLENKIKNI----KFNHDKFSVS-HKDVIRGIHYDNK 63
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ KLV + G I + VD+R++S TY + I N I IP +GF
Sbjct: 64 TF---KLVTAVYGAIDQVVVDMRKDSDTYKASMVFNIDDNKRFSILIPPMVGNGFRVKSD 120
Query: 122 NTEVIYKVT---DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
YK++ + + + W D +I I W P +S +D
Sbjct: 121 IAVYHYKLSYLGKYLDADKQYTIKWDDPTIGINWKCEK---PILSNRD 165
>gi|256028659|ref|ZP_05442493.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium sp. D11]
Length = 110
Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 38/104 (36%), Positives = 63/104 (60%), Gaps = 4/104 (3%)
Query: 77 FDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVE 136
DI VD+R NS T+G ++++E+++ N ++IP G AHGF+TLE NTE+ YK +FY+ +
Sbjct: 1 MDIVVDLRENSETFGKYLAIELNSKNKKVLFIPKGVAHGFLTLEDNTEIFYKCDNFYNPQ 60
Query: 137 HDSGVAWQDKSIDITWPLL----DTILPSVSEKDQNLPFLNQID 176
+ G+ W DK ++I+W + +SEKD+ +
Sbjct: 61 SEIGIIWNDKDLNISWNFKKYGINENELIISEKDKKNMSFKEYK 104
>gi|260584910|ref|ZP_05852654.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Granulicatella elegans
ATCC 700633]
gi|260157340|gb|EEW92412.1| dTDP-4-keto-6-deoxyglucose-3,5-epimerase [Granulicatella elegans
ATCC 700633]
Length = 449
Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 14/158 (8%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQD----NHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
D RG+F + + L + G+ + F Q+ N S S GTIRG+H Q AKL+
Sbjct: 24 DERGYFVENWRKIDLLKYGVPESFFQEKLQNNVSVS-KKGTIRGMHCQ----GWAKLMTV 78
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131
+G +D+R +SPTY I G+ I++P G ++G L + Y VT
Sbjct: 79 ASGTFRMCFIDLRLSSPTYKAVD--VIDVVPGMAIFVPAGVSNGAQALTDKGILNYLVTG 136
Query: 132 FYSVEHDS-GVAWQDKSIDITWPLLDTILPSVSEKDQN 168
+Y + G+ D+++++ W + + +S KDQ
Sbjct: 137 YYDLSVKHSGIMPLDQTLNLPWDVTGEV--IISSKDQQ 172
>gi|152777|gb|AAA16933.1| dTDP-6-deoxy-L-lyxo-4 hexulose 4-reductase [Shigella dysenteriae]
Length = 107
Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 75 RIFDIAVDIRRN-SPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
++F+ + I N PT+G W+ + +SA Q++IP GFAHGF+ L E +YK T++Y
Sbjct: 1 KVFEFSSLIFVNRHPTFGKWIGVNLSAEIKRQLWIPEGFAHGFLVLSETAEFVYKTTNYY 60
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ + +++ D +I I WP L + +S KD N
Sbjct: 61 NPSFEKSISYSDPTIKIQWPNLQDMHVKLSNKDLNAKNF 99
>gi|73695997|gb|AAZ80804.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Arcobacter butzleri]
Length = 116
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130
CI G I D+AVD R S ++G VS+E+++ Q++IP GF HGF L + V+ KV
Sbjct: 2 CIKGEILDVAVDFRVGSASFGKVVSIELNSEENKQLFIPRGFLHGFSVLSKDALVMIKVD 61
Query: 131 DFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEYD 182
+++++ GV + D+ ++I W + + VSE D+NL +SPF Y+
Sbjct: 62 RYFALDESIGVRYNDEDLNIDWKIKKESV-IVSEADKNLLAFKDTNSPFMYN 112
>gi|330945922|gb|EGH47270.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 91
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+ V IL+ + F D RG+F +++++K + GL FVQDNHS S G +RGLH+Q
Sbjct: 7 KLPEVLILEPKVFGDERGFFYESFNAKAFQAATGLTREFVQDNHSRS-QRGVLRGLHYQI 65
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNS 87
AQ KLVR G++ D+AVDIRR+S
Sbjct: 66 EN-AQGKLVRVTVGKVLDVAVDIRRSS 91
>gi|123471692|ref|XP_001319044.1| dTDP-4-dehydrorhamnose 3,5-epimerase family protein [Trichomonas
vaginalis G3]
gi|121901818|gb|EAY06821.1| dTDP-4-dehydrorhamnose 3,5-epimerase family protein [Trichomonas
vaginalis G3]
Length = 420
Score = 130 bits (329), Expect = 7e-29, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 11/154 (7%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+ G + ++ + + Q N S S IRG+H K+ C G+
Sbjct: 29 DAHGDLVELFN---ILKNHTDPEMKQINISRS-KLNVIRGIHV----APYHKIAFCPYGK 80
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
+FD+ VD+R NSPT+ W + + + +P AHG E ++ + Y +
Sbjct: 81 MFDVCVDMRPNSPTFMKWDGCWLDKDTH--VLVPPYCAHGVFAAEDDSVLCYYQGGCFFP 138
Query: 136 EHDSGVAWQDKSIDITWPLL-DTILPSVSEKDQN 168
D + D I I WP ++ +SEKD N
Sbjct: 139 HLDFAINPMDPQIGIKWPTPVNSDKYVLSEKDTN 172
>gi|302870779|ref|YP_003839415.1| dTDP-4-dehydrorhamnose 35-epimerase related [Caldicellulosiruptor
obsidiansis OB47]
gi|302573638|gb|ADL41429.1| dTDP-4-dehydrorhamnose 35-epimerase related [Caldicellulosiruptor
obsidiansis OB47]
Length = 153
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++ + KF D RG+F + + GL + F Q + S ++ G I+ H+ +
Sbjct: 4 IEGVKVKRLEKFADDRGFFMEILRDED----GLLEKFGQASMSLTY-PGVIKAFHYHKL- 57
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q + G + D+R +SPTY + +N + + IP AHG+ L
Sbjct: 58 --QDDVWFFPKGNAQVVLYDLRPDSPTYKKTNVFYMGEHNPIVLLIPKMVAHGYRVLGNE 115
Query: 123 -TEVIYKVTDFYSVE--HDSGVAWQDKSIDITW 152
++Y T+ Y+ E + + W DK I+ W
Sbjct: 116 PAIIVYFTTEHYNRENPDEYRIPWDDKEINFDW 148
>gi|222528108|ref|YP_002571990.1| dTDP-4-dehydrorhamnose 35-epimerase-like protein
[Caldicellulosiruptor bescii DSM 6725]
gi|222454955|gb|ACM59217.1| dTDP-4-dehydrorhamnose 35-epimerase related [Caldicellulosiruptor
bescii DSM 6725]
Length = 153
Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++ + KF D RG+F + + G + F Q + S ++ G I+ H+ +
Sbjct: 4 IEGVKVKRLEKFADDRGFFMEILRDED----GFLEKFGQASMSLTY-PGVIKAFHYHKL- 57
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q + G + D+R +SPTY + +N + + IP AHG+ L
Sbjct: 58 --QDDVWFFPKGNAQVVLYDLRPDSPTYKKTNVFYMGEHNPIVLLIPRMVAHGYRVLGNE 115
Query: 123 -TEVIYKVTDFYSVE--HDSGVAWQDKSIDITW 152
++Y T+ Y+ E + + W DK I+ W
Sbjct: 116 PAIIVYFTTEHYNRENPDEYRIPWDDKEINFDW 148
>gi|580881|emb|CAA51629.1| ipa-73d [Bacillus subtilis subsp. subtilis str. 168]
Length = 432
Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V++ K K D RG+F++ L + F Q + S S+ G I+ H+
Sbjct: 283 IDGVKVKKLMKHSDDRGFFAELVRDDE----NLLEHFGQASWSKSY-PGVIKAFHYHEK- 336
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q L G + D+R +S T G + +N + + IP G AHG+ L
Sbjct: 337 --QDDLWFFPTGHAQVVLYDLREDSKTKGETDVYYMGEDNPMLLLIPKGVAHGYRVLGET 394
Query: 123 T-EVIYKVTDFYSVE--HDSGVAWQDKSIDITW 152
+IY T Y+ + + + W D++I W
Sbjct: 395 PLTIIYFTTMSYNPDQPDEKRIPWDDETIGFNW 427
>gi|94992307|ref|YP_600406.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS2096]
gi|94545815|gb|ABF35862.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS2096]
Length = 164
Score = 123 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 17/159 (10%)
Query: 26 SSKLLKELGLQDVFV-----QDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIA 80
S + + +G + F Q+N SFS +RGLH P+ + V G++
Sbjct: 8 SKEKMLPIGFPERFFEEGKLQNNVSFSRQ-HVLRGLH--AEPWDKYISV-ADDGKVLGAW 63
Query: 81 VDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDS- 139
VD+R T+G I A+ G +++P G A+GF L Y V D+++++
Sbjct: 64 VDLREG-ETFGNVYQTVIDASKG--MFVPRGVANGFQVLSETVSYSYLVNDYWALDLKPK 120
Query: 140 --GVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
V + D S+ ITW + VSE D+N P L+ +
Sbjct: 121 YAFVNYADPSLGITW--ENLAAAEVSEADKNHPLLSDVK 157
>gi|256825665|ref|YP_003149625.1| dTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme [Kytococcus
sedentarius DSM 20547]
gi|256689058|gb|ACV06860.1| dTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme [Kytococcus
sedentarius DSM 20547]
Length = 166
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 4/156 (2%)
Query: 28 KLLKELGLQDVFVQDNHSF-SFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRN 86
L+E F D S + G +RG H P KL+ C AG ++D+ +D+R++
Sbjct: 5 AALREADATTRFTLDQVSVLTNRRGALRGFHVAEHP-GHTKLITCAAGAVWDVLIDLRQD 63
Query: 87 SPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDK 146
SPT+ + + ++ + P G AHGF++L + V+ V D ++ + G D
Sbjct: 64 SPTFRGVAEVHVEGSDPTAVLCPAGVAHGFLSLTEGSVVLIGVDDNFAGVTEHGFDALDP 123
Query: 147 SIDITWPLLDTILPSVSEKDQNLPFLNQ-IDSPFEY 181
++ + WPL D S +D + P L + S F +
Sbjct: 124 ALGVRWPLPDDDF-IRSARDASAPPLADLLGSGFRF 158
>gi|89098350|ref|ZP_01171234.1| spore coat polysaccharide synthesis [Bacillus sp. NRRL B-14911]
gi|89086899|gb|EAR66016.1| spore coat polysaccharide synthesis [Bacillus sp. NRRL B-14911]
Length = 152
Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 64/155 (41%), Gaps = 11/155 (7%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M I V K K D RG+F++ L F Q + S S+ G I+ H+
Sbjct: 1 MQIEGVITKKLIKHCDDRGFFAEVVRDDE----NLLSHFGQLSWSTSY-PGVIKAFHYHE 55
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q L +G + D+R NS ++G + NN + + IP G AHG+ L
Sbjct: 56 E---QDDLWFFPSGNAQVVLYDLRENSRSFGETNVYYMGENNPMILLIPKGVAHGYRVLG 112
Query: 121 MN-TEVIYKVTDFYSVE--HDSGVAWQDKSIDITW 152
N V+Y T Y+ + + W D SI W
Sbjct: 113 KNPATVVYCTTKSYNPAAPDEKRIPWDDPSIGFDW 147
>gi|296331421|ref|ZP_06873893.1| nucleotide sugar epimerase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305676406|ref|YP_003868078.1| nucleotide sugar epimerase [Bacillus subtilis subsp. spizizenii
str. W23]
gi|296151536|gb|EFG92413.1| nucleotide sugar epimerase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305414650|gb|ADM39769.1| nucleotide sugar epimerase [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 151
Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V++ K K D RG+F++ L + F Q + S S+ G I+ H+
Sbjct: 2 IDGVKVKKLTKHSDDRGFFAELVRDDE----NLLEHFGQASWSKSY-PGVIKAFHYHEK- 55
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q L G + D+R +S T G + +N + + IP G AHG+ L
Sbjct: 56 --QDDLWFFPTGHAQVVLYDLREDSKTKGETDVYYMGEDNPMLLLIPKGVAHGYRVLGET 113
Query: 123 T-EVIYKVTDFYSVE--HDSGVAWQDKSIDITW 152
+IY T Y+ + + + W D++I W
Sbjct: 114 PLTIIYFTTMSYNPDQPDEKRIPWNDETIGFNW 146
>gi|194016583|ref|ZP_03055197.1| spore coat polysaccharide biosynthesis protein SpsL [Bacillus
pumilus ATCC 7061]
gi|194012056|gb|EDW21624.1| spore coat polysaccharide biosynthesis protein SpsL [Bacillus
pumilus ATCC 7061]
Length = 151
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V+ K K D RG+F++ + F Q + S SF G I+ H+
Sbjct: 2 IDGVQTKKLMKHCDDRGFFAELIRDDE----PMLQRFGQASWSKSF-PGVIKAFHYHEK- 55
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q + AG + D+R +SPT G + +N + + IP G AHG+ L
Sbjct: 56 --QDDVWFFPAGHAQVVLYDLREDSPTKGQTDVYYMGEDNPMLLLIPKGVAHGYRVLGET 113
Query: 123 T-EVIYKVTDFYSVE--HDSGVAWQDKSIDITW 152
+++Y T+ Y + + +AW D++I W
Sbjct: 114 PLQIVYFTTESYDPKNPDEKRIAWNDETIGFDW 146
>gi|308175507|ref|YP_003922212.1| spore coat polysaccharide synthesis protein SpsL [Bacillus
amyloliquefaciens DSM 7]
gi|307608371|emb|CBI44742.1| spore coat polysaccharide synthesis protein SpsL [Bacillus
amyloliquefaciens DSM 7]
gi|328913856|gb|AEB65452.1| spore coat polysaccharide synthesis protein SpsL [Bacillus
amyloliquefaciens LL3]
Length = 153
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+I K K D RG+FS+ L + F Q + S S+ G I+ H+
Sbjct: 4 IEGVKIKKLIKHSDDRGFFSELVRDDE----QLLEHFGQASWSKSY-PGVIKAFHYHEK- 57
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q L G + D+R S T G + +N + + IP G AHG+ L
Sbjct: 58 --QDDLWFFPTGHAQVVLHDLREESATKGETDVYYMGEDNPMLLLIPKGVAHGYRVLGET 115
Query: 123 T-EVIYKVTDFYSVE--HDSGVAWQDKSIDITW 152
+IY T Y+ + + + W D++I W
Sbjct: 116 PLTIIYFTTMSYNPDQPDEKRIPWNDETIGFDW 148
>gi|291486370|dbj|BAI87445.1| spore coat polysaccharide biosynthesis protein SpsL [Bacillus
subtilis subsp. natto BEST195]
Length = 151
Score = 118 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V++ K K D RG+F++ L + F Q + S S+ G I+ H+
Sbjct: 2 IDGVKVKKLMKHSDDRGFFAELVRDDE----NLLEHFGQASWSKSY-PGVIKAFHYHEK- 55
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q L G + D+R +S T G + +N + + IP G AHG+ L
Sbjct: 56 --QDDLWFFPTGHAQVVLYDLREDSKTKGETDVYYMGEDNPMLLLIPKGVAHGYRVLGET 113
Query: 123 T-EVIYKVTDFYSVE--HDSGVAWQDKSIDITW 152
+IY T Y+ + + + W D++I W
Sbjct: 114 PLTIIYFTTMSYNPDQPDEKRIPWNDETIGFNW 146
>gi|116625282|ref|YP_827438.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Candidatus Solibacter
usitatus Ellin6076]
gi|116228444|gb|ABJ87153.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Candidatus Solibacter
usitatus Ellin6076]
Length = 173
Score = 118 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 5/151 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V++ F D RG+F + + Q + + ++ GT++ HF
Sbjct: 22 ISGVKVEPYALFPDDRGYFLEVHRMGRGLAAAFPPATTQMSAALNY-PGTVKAFHFHL-- 78
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM- 121
Q + G + VD+R S TYG +L + A QI IP G HG+ +
Sbjct: 79 -HQHDCWAPVYGLLQVALVDLRLGSATYGARNTLYVGALRPWQILIPPGVGHGYKVIGNK 137
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITW 152
++Y FY+ + + V + D I+ W
Sbjct: 138 EAMLVYLTDQFYNPKDEGRVPYNDPGINYDW 168
>gi|328555485|gb|AEB25977.1| spore coat polysaccharide synthesis protein SpsL [Bacillus
amyloliquefaciens TA208]
Length = 151
Score = 118 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+I K K D RG+FS+ L + F Q + S S+ G I+ H+
Sbjct: 2 IEGVKIKKLIKHSDDRGFFSELVRDDE----QLLEHFGQASWSKSY-PGVIKAFHYHEK- 55
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q L G + D+R S T G + +N + + IP G AHG+ L
Sbjct: 56 --QDDLWFFPTGHAQVVLHDLREESATKGETDVYYMGEDNPMLLLIPKGVAHGYRVLGET 113
Query: 123 T-EVIYKVTDFYSVE--HDSGVAWQDKSIDITW 152
+IY T Y+ + + + W D++I W
Sbjct: 114 PLTIIYFTTMSYNPDQPDEKRIPWNDETIGFDW 146
>gi|15615928|ref|NP_244232.1| spore coat polysaccharide synthesis (dTDP-4-dehydrorhamnose
epimerase) [Bacillus halodurans C-125]
gi|10175989|dbj|BAB07085.1| spore coat polysaccharide synthesis (dTDP-4-dehydrorhamnose
epimerase) [Bacillus halodurans C-125]
Length = 151
Score = 118 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++ + K+ D RG+F++ L + F Q + S S+ G I+ H+
Sbjct: 2 IEGVKVKRLTKYCDDRGFFAELVRDDE----HLLEHFGQASVSMSY-PGVIKAFHYHNE- 55
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL-EM 121
Q L +G + D+R NS T G + N + + IP G AHG+ L
Sbjct: 56 --QDDLWYFPSGNAQVVLHDLRPNSKTAGITDVYYMGEENPILLLIPKGVAHGYRVLGGK 113
Query: 122 NTEVIYKVTDFYSVE--HDSGVAWQDKSIDITW 152
+IY T Y+ + + +AW D SI+ W
Sbjct: 114 PATIIYFTTKSYNRKSPDEKRLAWDDPSINFDW 146
>gi|24379857|ref|NP_721812.1| putative dTDP-4-keto-L-rhamnose reductase [Streptococcus mutans
UA159]
gi|24377830|gb|AAN59118.1|AE014978_9 putative dTDP-4-keto-L-rhamnose reductase [Streptococcus mutans
UA159]
Length = 153
Score = 118 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 17/152 (11%)
Query: 33 LGLQDVFV-----QDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNS 87
LG + F Q+N SFS +RGLH P+ + + G++ +D+R
Sbjct: 4 LGFPESFFAEGKLQNNVSFS-RKNVLRGLH--AEPWDKYISI-ADEGKVLGSWIDLREGD 59
Query: 88 PTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDS---GVAWQ 144
++G I A+ G I++P G A+GF L Y V D++++E V +
Sbjct: 60 -SFGHVYQAVIDASKG--IFVPRGVANGFQVLSDKVSYSYLVNDYWALELKPKYAFVNYA 116
Query: 145 DKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
D ++ I W + VSE D+N P L +
Sbjct: 117 DPTLGIEW--ENLEEAQVSEADKNHPLLKDVK 146
>gi|237751852|ref|ZP_04582332.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229376756|gb|EEO26847.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 171
Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQR 60
+ V I+ KF+D RG ++S+ + +L F+ D +S IRG+H
Sbjct: 36 KLKGVYIITPSKFQDLRGEIWTAFTSEKIDKLLPSGLRFIHDKFIYS-HHNVIRGIHGDL 94
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Y K C+ G I + VD R++SPTY W I+ N I +P GF +
Sbjct: 95 KTY---KFATCVYGEIHQVVVDCRKDSPTYLQWEKFTINQENQQIILVPAGFGNAHCVRS 151
Query: 121 MNTEVIYKVT--DFYSVEHD 138
+ YK Y +
Sbjct: 152 KSAVYYYKCAYLGEYVDADE 171
>gi|322412000|gb|EFY02908.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus dysgalactiae
subsp. dysgalactiae ATCC 27957]
Length = 153
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 17/152 (11%)
Query: 33 LGLQDVFV-----QDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNS 87
+G + F Q+N SFS +RGLH P+ + V G++ VD+R
Sbjct: 4 IGFPEHFFEEGKLQNNVSFSRQ-HVLRGLH--AEPWDKYISV-ADDGKVLGAWVDLREGD 59
Query: 88 PTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDS---GVAWQ 144
T+G I A+ G I++P G A+GF L Y V D+++++ V +
Sbjct: 60 -TFGNVYQTVIDASKG--IFVPRGVANGFQVLSETVSYSYLVNDYWALDLKPKYAFVNYA 116
Query: 145 DKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
D S+ ITW + VSE D+N P L+ +
Sbjct: 117 DPSLGITW--ENLAAAEVSEADKNHPLLSDVK 146
>gi|255025970|ref|ZP_05297956.1| hypothetical protein LmonocytFSL_05755 [Listeria monocytogenes
FSL J2-003]
Length = 83
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V+++K + F D RG+F ++Y+ K E G+ F+QDNHS S + G +RG+H+Q
Sbjct: 7 KLAGVKLVKPKVFGDHRGFFMESYNEKAFHEAGIDMKFIQDNHSLSVEAGVLRGMHYQMN 66
Query: 62 PYAQAKL 68
P AQ KL
Sbjct: 67 PKAQTKL 73
>gi|50812301|ref|YP_054595.1| nucleotide sugar epimerase [Bacillus subtilis subsp. subtilis str.
168]
gi|221311745|ref|ZP_03593592.1| spore coat polysaccharide synthesis [Bacillus subtilis subsp.
subtilis str. 168]
gi|221316071|ref|ZP_03597876.1| spore coat polysaccharide synthesis [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221320982|ref|ZP_03602276.1| spore coat polysaccharide synthesis [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221325267|ref|ZP_03606561.1| spore coat polysaccharide synthesis [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321313340|ref|YP_004205627.1| nucleotide sugar epimerase [Bacillus subtilis BSn5]
gi|42559775|sp|Q7WY56|SPSL_BACSU RecName: Full=Spore coat polysaccharide biosynthesis protein spsL
gi|32468835|emb|CAE01469.1| nucleotide sugar epimerase [Bacillus subtilis subsp. subtilis str.
168]
gi|320019614|gb|ADV94600.1| nucleotide sugar epimerase [Bacillus subtilis BSn5]
Length = 151
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V++ K K D RG+F++ L + F Q + S S+ G I+ H+
Sbjct: 2 IDGVKVKKLMKHSDDRGFFAELVRDDE----NLLEHFGQASWSKSY-PGVIKAFHYHEK- 55
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q L G + D+R +S T G + +N + + IP G AHG+ L
Sbjct: 56 --QDDLWFFPTGHAQVVLYDLREDSKTKGETDVYYMGEDNPMLLLIPKGVAHGYRVLGET 113
Query: 123 T-EVIYKVTDFYSVE--HDSGVAWQDKSIDITW 152
+IY T Y+ + + + W D++I W
Sbjct: 114 PLTIIYFTTMSYNPDQPDEKRIPWDDETIGFNW 146
>gi|297250186|ref|ZP_06933881.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella abortus bv. 5 str.
B3196]
gi|297172981|gb|EFH32351.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brucella abortus bv. 5 str.
B3196]
Length = 148
Score = 117 bits (295), Expect = 6e-25, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 53/84 (63%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+NIN ++ + +D RGWF++ Y E L+ F Q + SFS + GT+RGLH+Q
Sbjct: 65 LNINGAWSIEPERLKDERGWFARVYCEAAFAERKLETHFPQHSLSFSREKGTLRGLHYQN 124
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIR 84
P+++ KLV C+ G ++D+ VD+R
Sbjct: 125 EPHSETKLVTCLQGIVWDVLVDLR 148
>gi|282851769|ref|ZP_06261132.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus
gasseri 224-1]
gi|282557011|gb|EFB62610.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus
gasseri 224-1]
Length = 83
Score = 117 bits (295), Expect = 8e-25, Method: Composition-based stats.
Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 22 SQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAV 81
+T++ + + + G FVQDN S S G +RGLHFQ+ Y Q KLVR + G +FD+AV
Sbjct: 1 METFNQRDMMDAGFSINFVQDNQS-SSTKGVLRGLHFQKK-YPQIKLVRAVRGSVFDVAV 58
Query: 82 DIRRNSPTYGCWVSLEISANNGL 104
D+R S TYG W +E++A N
Sbjct: 59 DLRSESKTYGKWYGVELTAENKN 81
>gi|154687905|ref|YP_001423066.1| SpsL [Bacillus amyloliquefaciens FZB42]
gi|154353756|gb|ABS75835.1| SpsL [Bacillus amyloliquefaciens FZB42]
Length = 153
Score = 117 bits (295), Expect = 8e-25, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++ K K D RG+FS+ L + F Q + S S+ G I+ H+
Sbjct: 4 IEGVKVKKLIKHSDDRGFFSELVRDDE----HLLERFGQASWSKSY-PGVIKAFHYHEK- 57
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q L G + D+R S T G + +N + + IP G AHG+ L
Sbjct: 58 --QDDLWFFPTGHAQVVLHDLREESATKGETDVYYMGEDNPMLLLIPKGVAHGYRVLGET 115
Query: 123 T-EVIYKVTDFYSVE--HDSGVAWQDKSIDITW 152
+IY T Y+ + + + W D +I W
Sbjct: 116 PLTIIYFTTMSYNPDQPDEKRIPWNDDTIGFDW 148
>gi|311070291|ref|YP_003975214.1| nucleotide sugar epimerase [Bacillus atrophaeus 1942]
gi|310870808|gb|ADP34283.1| nucleotide sugar epimerase [Bacillus atrophaeus 1942]
Length = 151
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++ K K D RG+F++ L + F Q + S S+ G I+ H+
Sbjct: 2 IKGVKVKKLTKHSDDRGFFAELVRDDE----NLLEHFGQASWSKSY-PGVIKAFHYHEK- 55
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q L G + D+R +S T G + +N + + IP G AHG+ L
Sbjct: 56 --QDDLWFFPTGHAQVVLYDLRDDSETKGETDVYFMGEDNPMLLLIPKGVAHGYRVLGET 113
Query: 123 T-EVIYKVTDFYSVE--HDSGVAWQDKSIDITW 152
+IY T Y+ + + + W D++I W
Sbjct: 114 PLTIIYFTTTSYNPDQPDEKRIPWNDETIGFNW 146
>gi|157694175|ref|YP_001488637.1| spore coat polysaccharide biosynthesis protein SpsL [Bacillus
pumilus SAFR-032]
gi|157682933|gb|ABV64077.1| spore coat polysaccharide biosynthesis protein SpsL [Bacillus
pumilus SAFR-032]
Length = 151
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V+ K K D RG+F++ L F Q + S SF G I+ H+
Sbjct: 2 IDGVQTKKLMKHCDDRGFFAELIRDDE----PLLKRFGQASWSKSF-PGVIKAFHYHEK- 55
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q + G + D+R +SPT + +N + + IP G AHG+ L
Sbjct: 56 --QDDVWFFPVGHAQVVLYDLREDSPTRRQTDVYYMGEDNPMLLLIPKGVAHGYRVLGET 113
Query: 123 T-EVIYKVTDFYSVE--HDSGVAWQDKSIDITW 152
+++Y T+ Y + + +AW D++I W
Sbjct: 114 PLQIVYFTTESYDPKNPDEKRIAWNDETIGFDW 146
>gi|237750314|ref|ZP_04580794.1| LOW QUALITY PROTEIN: dTDP-4-dehydrorhamnose 3,5-epimerase
[Helicobacter bilis ATCC 43879]
gi|229374208|gb|EEO24599.1| LOW QUALITY PROTEIN: dTDP-4-dehydrorhamnose 3,5-epimerase
[Helicobacter bilis ATCC 43879]
Length = 149
Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 57/134 (42%), Gaps = 10/134 (7%)
Query: 36 QDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVS 95
F D S +RG+H Y KLV C+ G + + VD R++S TY W
Sbjct: 15 NIRFKHDKIITSCH-NVLRGIHGDVKTY---KLVTCVYGEVHQVVVDCRKDSQTYLKWEK 70
Query: 96 LEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT---DFYSVEHDSGVAWQDKSIDITW 152
I+ NN I IP + + + YK+ ++ + AW D+ I I W
Sbjct: 71 FIINENNQQIILIPPNMGNSYYVSSNHAVYYYKLAYDGEYLDAQDQFTYAWNDEKIGINW 130
Query: 153 PLLDTILPSVSEKD 166
P T P +SE+D
Sbjct: 131 P---TTKPILSERD 141
>gi|83589036|ref|YP_429045.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Moorella
thermoacetica ATCC 39073]
gi|83571950|gb|ABC18502.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein [Moorella
thermoacetica ATCC 39073]
Length = 151
Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V++ K + D RG+F + + F Q + S S+ G I+ H+
Sbjct: 2 IAGVQVKKLVRHCDDRGFFMEILREDDE----IFSRFGQASMSKSY-PGVIKAFHYHE-- 54
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q L G + D+R +SPT G + +N + + IP AHG+ L
Sbjct: 55 -HQDDLWFFPVGNAQVVLYDLREDSPTRGETNVFYLGEDNPILLLIPRMVAHGYRVLGNE 113
Query: 123 -TEVIYKVTDFYSVEH--DSGVAWQDKSIDITW 152
+IY T Y+ H + + W D +I W
Sbjct: 114 PAIIIYFTTASYNRSHPDEKRIPWDDPTIGFDW 146
>gi|237752229|ref|ZP_04582709.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Helicobacter winghamensis
ATCC BAA-430]
gi|229376471|gb|EEO26562.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Helicobacter winghamensis
ATCC BAA-430]
Length = 170
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQR 60
+ + I+ KF+D RG +YS + L FV D + S +RG+H
Sbjct: 34 KLKGIYIITPNKFQDLRGEIWSSYSKDAIGHLLPNGLEFVLDKFTLS-KPNVLRGIHGDH 92
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+ KLV CI G I+ + VD R++SPTY W I+++N I IP F +
Sbjct: 93 KSW---KLVTCITGEIYQVVVDCRKDSPTYLKWEKFIINSDNQKLILIPPYFGNAQYVSS 149
Query: 121 M-NTEVIYKVTDFYSVEH 137
++ YK+ Y E+
Sbjct: 150 KCDSMYCYKL--AYDGEY 165
>gi|40388619|gb|AAR85524.1| RmlC [Thermoanaerobacterium thermosaccharolyticum]
Length = 83
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + I++T FED+RG+F +TY+ K GL VFVQDN S S G +RGLHFQ+
Sbjct: 10 DIEGLYIIETGIFEDNRGYFMETYNYNDFKA-GLDMVFVQDNQSKS-KKGVLRGLHFQKK 67
Query: 62 PYAQAKLVRCIAGRIFD 78
+ Q KLVR I G +FD
Sbjct: 68 -HPQGKLVRVIKGEVFD 83
>gi|23098582|ref|NP_692048.1| spore coat polysaccharide synthesis [Oceanobacillus iheyensis
HTE831]
gi|22776808|dbj|BAC13083.1| spore coat polysaccharide synthesis (dTDP-4-dehydrorhamnose
epimerase) [Oceanobacillus iheyensis HTE831]
Length = 151
Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+I + K D RG+ ++ L F Q S S+ G I+ H+
Sbjct: 2 IEGVQIKRIEKHCDDRGYLAELVRDDE----HLLSHFGQATISMSY-PGVIKAFHYHEK- 55
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL-EM 121
Q L +G + D+R+N+ T G + + +N + + IP G AHG+ L
Sbjct: 56 --QDDLWYFASGNAQVVLYDLRKNTNTTGRTDVIYMGEHNPILLLIPKGIAHGYRVLGSK 113
Query: 122 NTEVIYKVTDFYSV--EHDSGVAWQDKSIDITW 152
+IY T Y+ + +AW D I+ W
Sbjct: 114 PATIIYFTTKSYNKNDPDEKRLAWNDPEINFNW 146
>gi|328478993|gb|EGF48485.1| dTDP-glucose 4,6-dehydratase [Lactobacillus rhamnosus MTCC 5462]
Length = 359
Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 102 NGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPS 161
N Q+ +P GFAHGF+TL N +YKV +Y+ E D G+A+ D I I WP+ T
Sbjct: 2 NHRQLLVPKGFAHGFITLTPNVNFVYKVEGYYAPEADRGIAFDDPDIGIDWPMS-TAHLI 60
Query: 162 VSEKDQNLPFLN 173
+SEKDQ+ P L
Sbjct: 61 MSEKDQHHPQLK 72
>gi|291617821|ref|YP_003520563.1| Hypothetical Protein PANA_2268 [Pantoea ananatis LMG 20103]
gi|291152851|gb|ADD77435.1| Hypothetical Protein PANA_2268 [Pantoea ananatis LMG 20103]
Length = 170
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 103 GLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSV 162
Q++IP G AHGF+ L + YK T +Y+ + ++ + W D + I WP+ P +
Sbjct: 100 KTQLWIPPGLAHGFVVLSDVADFEYKCTQYYNPKDEACLMWNDPDVAIQWPVE---QPIL 156
Query: 163 SEKDQNLPFLNQI 175
S KDQ L ++
Sbjct: 157 SVKDQQGLSLQEL 169
>gi|117926764|ref|YP_867381.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Magnetococcus sp.
MC-1]
gi|117610520|gb|ABK45975.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein [Magnetococcus
sp. MC-1]
Length = 172
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
T+RGL Q+ P AQ L+ + G ++ + +D+RRNS ++ W +E+ A+ + I
Sbjct: 47 QARTLRGLRVQQAPAAQTLLLTPLTGMVWIMVLDLRRNSHSFCHWYGVEMQASAAQSLCI 106
Query: 109 PTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQN 168
P G AHGF+TL +T ++ + G+ W D + WP +S+ D
Sbjct: 107 PPGCAHGFLTLAADTLLLSMASVKDEPLLQRGIRWDDAQFGMAWPYPPE---QLSDLDGG 163
Query: 169 LPFL 172
LP
Sbjct: 164 LPDF 167
>gi|120555508|ref|YP_959859.1| dTDP-4-dehydrorhamnose 3,5-epimerase related [Marinobacter
aquaeolei VT8]
gi|120325357|gb|ABM19672.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein [Marinobacter
aquaeolei VT8]
Length = 115
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 47/106 (44%)
Query: 69 VRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128
+R GR+ D+ D NSP +G WV +S +++ G GF+ + + YK
Sbjct: 1 MRVTLGRVSDVFADQCTNSPIFGRWVGKYLSEVKKRMLWVSVGGGRGFLVISDTADFQYK 60
Query: 129 VTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQ 174
T+F+ H+ + W ++++ + + KD + L Q
Sbjct: 61 CTNFFGPMHECCICWCYPALNLNLSEATSEDVQLWGKDNEVQSLEQ 106
>gi|251781269|ref|ZP_04824185.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|243081716|gb|EES47777.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 73
Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I++ + F D+RG+F +TY+ + E GL +FVQDN S F G +RGLHFQ+
Sbjct: 10 SIYGVYIIEPKVFGDNRGYFMETYNREQFLEAGLDMIFVQDNESR-FTKGVLRGLHFQK 67
>gi|158318027|ref|YP_001510535.1| dTDP-4-dehydrorhamnose 35-epimerase related [Frankia sp. EAN1pec]
gi|158113432|gb|ABW15629.1| dTDP-4-dehydrorhamnose 35-epimerase related [Frankia sp. EAN1pec]
Length = 198
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 20/183 (10%)
Query: 1 MNINPVRILKTRKFEDS---RGWFSQTYSSKLL-KELGLQDVFVQDNHSFSFDCGTIRGL 56
++I + F D RG + +++ G V N + S G +RG+
Sbjct: 14 LSIEGAFLF---VFPDQQDQRGSRRSWFDEQVVHTATGRPLGPVLANVTVSHQ-GALRGI 69
Query: 57 HFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
+ R A K V C++G + D+ VD+R SPT+G + + +++ G H
Sbjct: 70 KYSRDGRA-GKYVSCLSGMVLDVVVDLRVGSPTFGASHIRRLDGGQPVGLFLAPGLGHAT 128
Query: 117 MTLEMNTEVIYKVTDFYSVEHDSG----VAWQDKSIDITWPLLDTILPSVSEKDQNLPFL 172
+ L + Y HD G V D + I WP + +S+ D P L
Sbjct: 129 LALTEQAAMAYL-----HPAHDEGPEVAVHPFDSDLSIAWP--SGLSFLLSDGDTAAPTL 181
Query: 173 NQI 175
Q
Sbjct: 182 GQA 184
>gi|269837010|ref|YP_003319238.1| dTDP-4-dehydrorhamnose 3,5 epimerase [Sphaerobacter thermophilus
DSM 20745]
gi|269786273|gb|ACZ38416.1| dTDP-4-dehydrorhamnose 3,5 epimerase [Sphaerobacter thermophilus
DSM 20745]
Length = 151
Score = 97.4 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 63/159 (39%), Gaps = 19/159 (11%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSK--LLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ V + + D RG ++ ++ G Q S S+ G IRG H+ +
Sbjct: 2 IHGVEVKRLITHVDERGALTELIRRDDPFFEQFG------QCYVSVSY-PGVIRGWHYHK 54
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q C+ G I DIR +SPTYG I +N + + IP G HGF +
Sbjct: 55 K---QTDYFTCVKGMIKVPLYDIREDSPTYGELNEFFIGDDNRIVVKIPAGVLHGFKNIG 111
Query: 121 MNTEVIYKV---TDFYSVE--HDSGVAWQDKSIDITWPL 154
Y + T+ Y+ + + + W I W +
Sbjct: 112 HEP--CYLLNFPTEPYNPDDPDEYRIPWNSPDIPYNWDI 148
>gi|297625076|ref|YP_003706510.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Truepera
radiovictrix DSM 17093]
gi|297166256|gb|ADI15967.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Truepera
radiovictrix DSM 17093]
Length = 197
Score = 97.4 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 4/146 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSF-DCGTIRGLHFQR 60
I V + +K G F + GL F S S G I H
Sbjct: 41 EIAGVWLKPLKKHRGDNGAFMEYLRLDEGAAEGLPAPFTVRQLSVSHAQPGRINAFHIH- 99
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q +L I G++ VD+R SPT G + +S Q+++P G AHG+
Sbjct: 100 PREPQNELWTVIQGQLKVWLVDLRATSPTEGNKRAFILSGEEPAQLFVPAGVAHGYQAGP 159
Query: 121 MNTEVIYKVTDFYSVEH--DSGVAWQ 144
++Y + ++ EH + + W
Sbjct: 160 EGALLLYTMDQQFNAEHPNEGRLPWD 185
>gi|147921181|ref|YP_685008.1| dTDP-4-dehydrorhamnose 3,5 epimerase [uncultured methanogenic
archaeon RC-I]
gi|110620404|emb|CAJ35682.1| dTDP-4-dehydrorhamnose 3,5 epimerase [uncultured methanogenic
archaeon RC-I]
Length = 157
Score = 97.0 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 60/162 (37%), Gaps = 15/162 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYS--SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I V I K R D RGW + + K+ G V + G ++G H+
Sbjct: 3 DIEGVVIKKLRVIPDERGWLMEILRCDDPMFKQFGQVYV-------TTAYPGVVKGWHYH 55
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ Q CI G + D R SPT G + L + N + I +P G HGF +
Sbjct: 56 KK---QTDNFTCIHGMMKVALYDAREGSPTRGNLMELFVGEKNPILISVPPGVYHGFKGI 112
Query: 120 EMNTEVIYKVTDF---YSVEHDSGVAWQDKSIDITWPLLDTI 158
T V Y+ + + K I W LL +
Sbjct: 113 GTETAYFLSVPTLPYNYAEPDEYRLPPDSKEIPYDWGLLPGL 154
>gi|19705020|ref|NP_602515.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|296329269|ref|ZP_06871770.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
gi|19712930|gb|AAL93814.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|296153625|gb|EFG94442.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
Length = 82
Score = 95.5 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Query: 105 QIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL----DTILP 160
++IP FAHGF+TLE NTE+ YK +FY++++++G+ W D+ ++I W +
Sbjct: 1 MLFIPKSFAHGFLTLEDNTEIFYKCDNFYNLQNEAGIIWNDRDLNIDWNFKKYNINENEL 60
Query: 161 SVSEKDQNLPFLNQID 176
+SEKD+ +
Sbjct: 61 IISEKDKRNISFKEYK 76
>gi|313844159|ref|YP_004061822.1| hypothetical protein OlV1_190 [Ostreococcus lucimarinus virus OlV1]
gi|312599544|gb|ADQ91566.1| hypothetical protein OlV1_190 [Ostreococcus lucimarinus virus OlV1]
Length = 396
Score = 94.7 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 22/164 (13%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F+DSRG ++ Q + + + +RGLH P KL+ +
Sbjct: 4 FKDSRGEIL--FNIDE-----PPFEIKQC-FTTTNERHVLRGLHCSPYP----KLITVNS 51
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G+IFD+ V G + + + N G + I AHG+ E +E++Y + +
Sbjct: 52 GKIFDVIVKPD------GKYDAYIL--NKGDSLLIEANCAHGYFCYE-KSEIVYFLGGVF 102
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
+ D W D ++I WP + +S KD + P ID+
Sbjct: 103 NSVLDKSYLWNDPILNIDWP-SEAKNAIISLKDLSNPTFKNIDT 145
>gi|329766678|ref|ZP_08258221.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329136933|gb|EGG41226.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 190
Score = 94.7 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 10/151 (6%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+IL D+RG+ S+ + + ++ Q N S S G IR H
Sbjct: 30 GVKILIPEIKHDARGYVSEVFRADWIEFFDGTFP-KQVNLSMS-KPGIIRAWHRHSRN-- 85
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN-T 123
Q G++ D + S T+G V + + + + +P F HG T+ +
Sbjct: 86 QTDYFLVKKGKMKICIYDGDKKSNTFGKLVEVFVGDDEFKIVKVPGNFWHGTQTISDYPS 145
Query: 124 EVIYKVTDFYS---VEHDSGVAWQDKSIDIT 151
E IY +T+ Y + + + W D S+ I
Sbjct: 146 ETIYFLTNLYDYENPDEER-LDWNDPSV-ID 174
>gi|145595422|ref|YP_001159719.1| hypothetical protein Strop_2902 [Salinispora tropica CNB-440]
gi|145304759|gb|ABP55341.1| hypothetical protein Strop_2902 [Salinispora tropica CNB-440]
Length = 104
Score = 94.7 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 98 ISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDT 157
+ + +Y+ G GF L + V Y + Y+ + V D + I WP+
Sbjct: 13 LDDADRRAVYLAEGLGQGFCALSEDATVSYLCSTTYNSAVEHAVHPLDPDMGIEWPVRS- 71
Query: 158 ILPSVSEKDQNLPFLN 173
P +S++D P L
Sbjct: 72 --PLLSDRDAAAPSLA 85
>gi|326486449|gb|ADZ76277.1| putative nucleotide-sugar epimerase/dehydratase [Campylobacter
jejuni subsp. jejuni]
Length = 99
Score = 93.9 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT---DF 132
+ + VD R++SPTY W IS N I +P + YK+ ++
Sbjct: 1 MHQVVVDCRKDSPTYLKWEKFIISPRNQQLILLPPNMGNSHYVSSKEAVYYYKLAYEGEY 60
Query: 133 YSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKD 166
AW D+ I I WP T P +SE+D
Sbjct: 61 LDAPDQFTYAWNDERIAIDWP---TNSPILSERD 91
>gi|219852974|ref|YP_002467406.1| dTDP-4-dehydrorhamnose 3,5 epimerase [Methanosphaerula palustris
E1-9c]
gi|219547233|gb|ACL17683.1| dTDP-4-dehydrorhamnose 3,5 epimerase [Methanosphaerula palustris
E1-9c]
Length = 158
Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/159 (22%), Positives = 58/159 (36%), Gaps = 11/159 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V I + D RGW + + + F Q + + G ++G H+ +
Sbjct: 5 IDGVVIKPLKVIPDERGWLMEILRNDD----PIFTQFGQVYMT-TAYPGVVKGWHYHKK- 58
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q C+ G + D R S TYG + + + N + I +P G HGF +
Sbjct: 59 --QTDNFTCVHGMMKVALYDKREGSSTYGALMEIFVGEKNPVLISVPPGVYHGFKGIGTE 116
Query: 123 TEVIYKVTDF---YSVEHDSGVAWQDKSIDITWPLLDTI 158
T V Y+ + + I W LL +
Sbjct: 117 TAFFVSVPTLPYNYAEPDEYRLPPDTDEIPYDWGLLPGL 155
>gi|300728518|ref|ZP_07061877.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella bryantii B14]
gi|299774236|gb|EFI70869.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella bryantii B14]
Length = 62
Score = 92.4 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHF 58
I+ V I++ + F+D+RG+F +++S + +E + FVQDN S S G +RGLHF
Sbjct: 7 KIDGVVIIEPKVFKDARGYFFESFSQREFEEKVRKINFVQDNESMSS-YGVMRGLHF 62
>gi|304389155|ref|ZP_07371190.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis ATCC
13091]
gi|304336887|gb|EFM03086.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Neisseria meningitidis ATCC
13091]
Length = 66
Score = 91.6 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLH 57
I V++L+ + F D+RG+F +T+ + K + FVQ+NHS S G +RGLH
Sbjct: 13 IPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGK-GVLRGLH 66
>gi|317502877|ref|ZP_07960976.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella salivae DSM
15606]
gi|315666013|gb|EFV05581.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Prevotella salivae DSM
15606]
Length = 85
Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
+I V I++ R F+D+RG+F + + + ++ + F+QDN S S G +RGLH+Q+
Sbjct: 7 DIKGVFIIEPRVFQDARGYFFEAWKDEEFQQKIGKIKFIQDNESKSS-YGVLRGLHYQK 64
>gi|221632270|ref|YP_002521491.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermomicrobium roseum DSM
5159]
gi|221156733|gb|ACM05860.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Thermomicrobium roseum DSM
5159]
Length = 151
Score = 88.6 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 63/160 (39%), Gaps = 19/160 (11%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYS--SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ V I + D RG ++ ++ G Q S S+ G IR H+ +
Sbjct: 2 IHGVEIKRLVTHVDERGSLTELIRCDDPFFEKFG------QCYVSVSW-PGVIRAWHWHK 54
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q CI G I D+R SPTY + +N + + IP G AHGF +
Sbjct: 55 K---QTDYFVCIRGMIKVPLFDLRPESPTYRELNEFFLGDDNRIVLKIPPGVAHGFKNI- 110
Query: 121 MNTEVIYKV---TDFYSVE--HDSGVAWQDKSIDITWPLL 155
TE Y + T+ Y + + + + I +W +
Sbjct: 111 -GTEPCYLLNFPTEPYDADDPDEYRLPYDTPEIPYSWEIK 149
>gi|288917944|ref|ZP_06412303.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EUN1f]
gi|288350599|gb|EFC84817.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia sp. EUN1f]
Length = 71
Score = 88.2 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 110 TGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNL 169
G AHG+ TL +TE Y++ ++ HD G+ + D + I WPL ++ +S+KD+
Sbjct: 1 AGLAHGYQTLVDDTEATYQMNVPFTPGHDRGLRFDDPRLGIAWPLPVSV---ISDKDRAW 57
Query: 170 PFL 172
P L
Sbjct: 58 PLL 60
>gi|85860186|ref|YP_462388.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Syntrophus aciditrophicus SB]
gi|85723277|gb|ABC78220.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Syntrophus aciditrophicus SB]
Length = 151
Score = 87.8 bits (217), Expect = 7e-16, Method: Composition-based stats.
Identities = 36/158 (22%), Positives = 59/158 (37%), Gaps = 11/158 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V++ K R D RG + + G+ F Q + + G ++G H+ +
Sbjct: 2 IDGVQVKKLRVIPDERGRLMEILRADD----GMFKGFGQVYMT-TAYPGVVKGWHYHKK- 55
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF-MTLEM 121
Q + + G + + D R NSPT G N + ++IP HGF
Sbjct: 56 --QYDNMAVVKGMMKIVLYDSRENSPTRGEVNVFFAGEYNPVLLHIPPFVYHGFKCVSTE 113
Query: 122 NTEVIYKVTDFYS--VEHDSGVAWQDKSIDITWPLLDT 157
VI T+ Y+ + V + I W D
Sbjct: 114 EAIVINTPTEVYNYGEPDEFRVHPHNNDIPYNWDREDG 151
>gi|330506722|ref|YP_004383150.1| dTDP-4-dehydrorhamnose 3,5-epimerase-like protein [Methanosaeta
concilii GP-6]
gi|328927530|gb|AEB67332.1| dTDP-4-dehydrorhamnose 3,5-epimerase-related protein [Methanosaeta
concilii GP-6]
Length = 181
Score = 87.0 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 14/156 (8%)
Query: 3 INPVRILKTRKFEDSRGWFSQT--YSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I + F D RG+ ++ + +K ++ Q S+S+ G I+G H
Sbjct: 29 IEGVVIKDMKLFSDERGFLTELIRLDDEEMKASNIK----QIIASYSY-PGMIKGWHLHS 83
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q + C+ G + D R +SPTY + + +YIP G HG +
Sbjct: 84 K---QEDHLICVTGIVKVALYDYREDSPTYKFLNEIFMGEKCPRAVYIPPGVFHGTKNIG 140
Query: 121 MNTEVIYKV-TDFYSVE--HDSGVAWQDKSI-DITW 152
+ V+ + + FY E + V D I W
Sbjct: 141 NDISVVIGMPSLFYDPENVDERRVNPIDNDIVPYDW 176
>gi|163955190|ref|YP_001648294.1| hypothetical protein OsV5_218f [Ostreococcus virus OsV5]
gi|163638639|gb|ABY27998.1| hypothetical protein OsV5_218f [Ostreococcus virus OsV5]
Length = 393
Score = 86.6 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 22/164 (13%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
F+D RG ++ Q + + +RGLH P K +
Sbjct: 4 FKDHRGEIL--FNIDE-----SPFEIKQCFSTLNEKY-VLRGLHCSPYP----KFITVNN 51
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
G+IFD+ V G + + + G + I AHG+ E +E+IY + +
Sbjct: 52 GKIFDVIVKPD------GTYDAYNL--KKGDSLLIEPNCAHGYFCFE-QSEIIYFLGGTF 102
Query: 134 SVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDS 177
++ W D ++I WP + VS KD N D+
Sbjct: 103 DASNEKNYLWNDPYLNIQWP-HEVKNAVVSMKDMNNQVFKIFDT 145
>gi|126178136|ref|YP_001046101.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanoculleus marisnigri
JR1]
gi|125860930|gb|ABN56119.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanoculleus marisnigri
JR1]
Length = 158
Score = 85.1 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 15/161 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYS--SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ V I R D RGW + + ++ G Q + + G ++ H+ +
Sbjct: 5 IDGVAIKNLRLIPDERGWLMEILRCDDAIFEKFG------QVYCT-TAYPGVVKAWHYHK 57
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q C+ G + D R +SPT G + + N + I +P G HGF +
Sbjct: 58 K---QTDNFTCVHGMMKVALYDAREDSPTRGNLMEFFVGEKNPILISVPPGVYHGFKGIG 114
Query: 121 MNTEVIYKVTDF---YSVEHDSGVAWQDKSIDITWPLLDTI 158
T + Y + + I W L +
Sbjct: 115 TETAFFVSIPTLPYSYDDPDEFRLPPDTNEIPYDWGLTPGL 155
>gi|57790391|gb|AAW56125.1| Cj81-046 [Campylobacter jejuni subsp. jejuni 81-176]
Length = 106
Score = 83.5 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRP 61
+ V I+ KF D RG ++SK + +L F+ D S IRG+H
Sbjct: 13 LKGVYIITPNKFRDLRGEIWTAFTSKAVDKLLPNGLKFIHDKFIHS-KHNVIRGIHGDVK 71
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEIS 99
Y KL C+ G I + VD R++SPTY + I+
Sbjct: 72 TY---KLATCVYGEIHQVVVDCRKDSPTYLKYEKFIIN 106
>gi|20090758|ref|NP_616833.1| hypothetical protein MA1909 [Methanosarcina acetivorans C2A]
gi|19915817|gb|AAM05313.1| hypothetical protein MA_1909 [Methanosarcina acetivorans C2A]
Length = 181
Score = 82.0 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 13/146 (8%)
Query: 3 INPVRILKTRKFEDSRGWFSQT--YSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V + T+ F D RG+ ++ + +K Q S+S+ G I+G H
Sbjct: 29 IEGVVVKDTKLFSDERGFLTELIRLDDEDMKA----QDIKQIIASYSY-PGMIKGWHLHS 83
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q + C++G + + D R +SPTY + + +YIP G HG +
Sbjct: 84 K---QEDHLFCVSGMVKVVLYDYREDSPTYKVLNEIFMGDRYPRTVYIPPGIFHGTKNVG 140
Query: 121 MNTEVIYKV-TDFYSVE--HDSGVAW 143
+ V+ + + Y E + V
Sbjct: 141 NDVSVVIGMPSLLYDPEDVDERRVNP 166
>gi|315926854|gb|EFV06226.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Campylobacter jejuni subsp.
jejuni DFVF1099]
Length = 109
Score = 81.6 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ V I+ KF D RG ++ + L +L + + + + +RG+H
Sbjct: 13 LKGVYIITPNKFRDLRGEIWTAFTDEYLSKLVPDGIKFKHDKFINSHFNVLRGIHGDVKT 72
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTY 90
Y KLV C+ G + + VD R++SP +
Sbjct: 73 Y---KLVTCVYGEVHQVVVDCRKDSPNF 97
>gi|73669392|ref|YP_305407.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanosarcina barkeri str.
Fusaro]
gi|72396554|gb|AAZ70827.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanosarcina barkeri str.
Fusaro]
Length = 181
Score = 81.2 bits (200), Expect = 6e-14, Method: Composition-based stats.
Identities = 39/154 (25%), Positives = 57/154 (37%), Gaps = 10/154 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I + F D RG ++ E Q S+S+ G I+G H
Sbjct: 29 IEGVFIRDMKLFSDERGLLTEVIRLDD--ENLKAQNIKQIIASYSY-PGMIKGWHLHSK- 84
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q + C G + D R +SPTY + + IYIP G HG + +
Sbjct: 85 --QEDHLFCATGMVKVALYDYREDSPTYKVINEIFMGEKYPRTIYIPPGIFHGTKNVGND 142
Query: 123 TEVIYKV-TDFYSVE--HDSGVAWQDKS-IDITW 152
V+ + + FY+ E + V D I W
Sbjct: 143 ISVVIGMPSLFYNPEDVDERRVNPIDNDIIPYDW 176
>gi|226357059|ref|YP_002786799.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Deinococcus deserti VCD115]
gi|226319049|gb|ACO47045.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Deinococcus deserti
VCD115]
Length = 179
Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 8/148 (5%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTY---SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHF 58
I V I RK G F + Y + + ++ L Q + S+ G + H
Sbjct: 23 QIEGVWIQPLRKNRSENGAFME-YLRINEQGIQGLPGPLSPRQISVSW-AAPGRVNAFHI 80
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
Q ++ I G++ VD R S T G L +S ++IP+G AHG+
Sbjct: 81 HVKTV-QNEIWCVIQGQLMVWLVDCRAGSSTLGVRRKLVLSGEQPTMVHIPSGVAHGYQA 139
Query: 119 LEMNTEVIYKVTDFYSVEH--DSGVAWQ 144
E ++Y + + ++ + +AW
Sbjct: 140 SEEGATLLYSMDAQFDLDDPNEGRIAWN 167
>gi|227829546|ref|YP_002831325.1| dTDP-4-dehydrorhamnose 3 5-epimerase-like protein [Sulfolobus
islandicus L.S.2.15]
gi|227455993|gb|ACP34680.1| dTDP-4-dehydrorhamnose 3 5-epimerase-like protein [Sulfolobus
islandicus L.S.2.15]
Length = 86
Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V ++K + F D+RG+F + + +++ + Q N SFS G +RGLH+Q PP
Sbjct: 11 GVILIKPKAFPDNRGYFKEIFKESEFRKMNIPTPL-QANVSFS-KPGVVRGLHYQLPPKG 68
>gi|282165386|ref|YP_003357771.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Methanocella
paludicola SANAE]
gi|282157700|dbj|BAI62788.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Methanocella
paludicola SANAE]
Length = 159
Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 58/161 (36%), Gaps = 15/161 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKL--LKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ V + + R D RG+ + K+ G V S G ++G H+ +
Sbjct: 6 IDGVHVKQLRLNVDERGFLMEIMRPDWETYKKFGQAYV-------TSAYPGVVKGWHYHK 58
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF-MTL 119
Q C+ G + + D R NSPT G I N +Q+ IP HGF
Sbjct: 59 K---QFDNFVCVRGMMKVVLYDGRENSPTKGVINEFFIGERNPVQVQIPPYVYHGFKCVG 115
Query: 120 EMNTEVIYKVTDFYS--VEHDSGVAWQDKSIDITWPLLDTI 158
++ T+ Y + + K I W L +
Sbjct: 116 TEEALIVNVPTEMYDYKEPDEYRLPPDTKEIPYDWGLAPGL 156
>gi|330508399|ref|YP_004384827.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanosaeta concilii GP-6]
gi|328929207|gb|AEB69009.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Methanosaeta concilii GP-6]
Length = 165
Score = 78.9 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 25/155 (16%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ + I ++F D RG+F++ + +QD VQ N S S+ G +R H
Sbjct: 2 LPGIVIKPLKRFADERGFFTEIMRKDW--KDVIQDDIVQANMSLSY-PGMVRAWHRHE-- 56
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISA-----NNGLQIYIPTGFAHGF- 116
Q + G + A D E+ +N + +P + HGF
Sbjct: 57 RGQVDHFLVVRGALKICAYDDDTR----------ELDEIISAGDNPQMVRMPGHYWHGFG 106
Query: 117 MTLEMNTEVIYKVTDFYS---VEHDSGVAWQDKSI 148
+ +IY V Y + + W D +I
Sbjct: 107 VVGNEQATLIYFVNRLYDYASPDEERR-PWNDPAI 140
>gi|167933030|ref|ZP_02520117.1| dTDP-4-dehydrorhamnose reductase [candidate division TM7
single-cell isolate TM7b]
Length = 76
Score = 78.5 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQ 59
I + ++K D+RGWF + Y + ++ LGL VQ+N SF+ G RGLH +
Sbjct: 18 IPGLFVVKLPVHGDNRGWFKENYQKEKMEALGLPSFDIVQNNISFNDKAGATRGLHAE 75
>gi|300856928|ref|YP_003781912.1| dTDP-4-dehydrorhamnose 3,5 epimerase [Clostridium ljungdahlii DSM
13528]
gi|300437043|gb|ADK16810.1| dTDP-4-dehydrorhamnose 3,5 epimerase [Clostridium ljungdahlii DSM
13528]
Length = 171
Score = 78.5 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 57/162 (35%), Gaps = 17/162 (10%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V+ + + + D RG + + + LG + F Q S G ++G H
Sbjct: 20 IEGVKYKRLKVYPDERGSLIEIFRNDDEDFLGGK--FGQLITSI-CYPGVVKGWHIHSV- 75
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
Q + I+G + D R NSPT G + N L I IP G HG +
Sbjct: 76 --QVDRLAVISGMAKIVLYDARENSPTKGEINEFFVGERNPLFILIPPGVYHGLKAIGTQ 133
Query: 123 TEV-------IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDT 157
+ +YK Y + V + I W D
Sbjct: 134 PSITLGLPTELYK----YDEPDEFRVHPHNDEIPYNWDRQDG 171
>gi|147677414|ref|YP_001211629.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Pelotomaculum thermopropionicum SI]
gi|146273511|dbj|BAF59260.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Pelotomaculum thermopropionicum SI]
Length = 147
Score = 78.2 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 50/144 (34%), Gaps = 11/144 (7%)
Query: 12 RKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
+ D RG+ + S E F Q + G I+ H+ + Q C
Sbjct: 7 KVIPDERGFLMEMLRSDW-PEF---MNFAQAYVTA-CYPGVIKAWHYHKL---QWDHFVC 58
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT-EVIYKVT 130
+AG + D R S T G + N + + IP HGF T ++ T
Sbjct: 59 VAGMARTVLYDPREGSSTKGKVNVFHLGYLNPVLLKIPPMVYHGFAAEGDKTSLIVNFPT 118
Query: 131 DFYS--VEHDSGVAWQDKSIDITW 152
Y+ + + + D SI W
Sbjct: 119 RLYNYGQPDEFRLPYDDPSIPYRW 142
>gi|260892181|ref|YP_003238278.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ammonifex degensii KC4]
gi|260864322|gb|ACX51428.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ammonifex degensii KC4]
Length = 153
Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 57/155 (36%), Gaps = 15/155 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKL--LKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ V++ K R D RG+ + S + G V G I+ H+ +
Sbjct: 4 IHGVQVKKLRLIPDDRGFLMECLRSDWPEFTKFGQAYVTA-------CYPGVIKAWHYHK 56
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q CI G D R +SPT G I N I IP HGF +
Sbjct: 57 V---QWDHFVCIYGMAKVALYDPREDSPTRGMVNVFHIGLLNPCLIKIPPRVYHGFTSEG 113
Query: 121 MN-TEVIYKVTDFYSVE--HDSGVAWQDKSIDITW 152
++ T+ Y+ E + V + D SI +W
Sbjct: 114 GQLALILNIPTELYNYEEPDEYRVPYNDPSIPFSW 148
>gi|284162304|ref|YP_003400927.1| dTDP-4-dehydrorhamnose 3 5-epimerase-like protein [Archaeoglobus
profundus DSM 5631]
gi|284012301|gb|ADB58254.1| dTDP-4-dehydrorhamnose 3 5-epimerase-like protein [Archaeoglobus
profundus DSM 5631]
Length = 165
Score = 75.1 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 16/150 (10%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ + I ++F D RG+F++ E+ +D VQ N S ++ G +R H +
Sbjct: 2 LPGIVIKPLKRFADERGFFTEIMRKDW--EI-FEDEIVQANLSITY-PGIVRAWH--KHE 55
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEIS-ANNGLQIYIPTGFAHGFMTL-E 120
Q CI G I A D + ++ IS +N + IP + HGF L
Sbjct: 56 RGQVDYFVCIKGAIKICAYDDKT------QELAEIISTGDNPQIVRIPGHYWHGFKALGV 109
Query: 121 MNTEVIYKVTDFYS--VEHDSGVAWQDKSI 148
++Y V Y + W D +I
Sbjct: 110 EPAMLVYFVNRLYDYKNPDEVRRPWNDPTI 139
>gi|313117364|ref|YP_004044347.1| dTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme [Halogeometricum
borinquense DSM 11551]
gi|312294255|gb|ADQ68686.1| dTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme [Halogeometricum
borinquense DSM 11551]
Length = 156
Score = 74.7 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 34/155 (21%), Positives = 55/155 (35%), Gaps = 11/155 (7%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI+ V + + D RG + + + +S ++ G +R H
Sbjct: 3 NIHDVEVRDLQVNADQRGHLVEVFREDWDE---YDIDPAMSYYSMTY-PGVVRAWHRHLE 58
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q C GRI D R++SPT G + I +N I IP HGF +
Sbjct: 59 --GQIDHFVCPKGRITVGIYDDRQDSPTNGELDTFVIGEHNQQVIRIPGDCWHGFKAIGD 116
Query: 122 NTEVI--YKVT--DFYSVEHDSGVAWQDKSIDITW 152
+ Y D+ + + + + D I W
Sbjct: 117 EPAFLINYPTNLYDYEDPDEER-IPYDDDRIPYDW 150
>gi|330368659|gb|AEC11781.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brachyspira hyodysenteriae]
gi|330368664|gb|AEC11785.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brachyspira hyodysenteriae]
gi|330368669|gb|AEC11789.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brachyspira hyodysenteriae]
gi|330368674|gb|AEC11793.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Brachyspira hyodysenteriae]
Length = 68
Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 120 EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPF 179
+ YK +DFY E + G+ + DK+I+I W DT VS+KD LP ++ F
Sbjct: 1 SESAVFAYKCSDFYHPEEEGGIIYNDKNINIDW-TCDTKDVLVSDKDLKLPEFDKNKKYF 59
Query: 180 EYDG 183
DG
Sbjct: 60 SLDG 63
>gi|297567133|ref|YP_003686105.1| dTDP-4-dehydrorhamnose 35-epimerase-like protein [Meiothermus
silvanus DSM 9946]
gi|296851582|gb|ADH64597.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Meiothermus
silvanus DSM 9946]
Length = 176
Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 4/146 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFD-CGTIRGLHFQR 60
I V RK G F + + + GL F S S+ G I H
Sbjct: 20 EIAGVLHQPLRKHRALEGAFMEHLRLEGGQVEGLPVGFEVRQISVSWAVPGRINAFHLH- 78
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q +L IAG + VD+R++SPT G + +S +YIP+G AHG+
Sbjct: 79 PKRVQDELWCVIAGELKVWLVDVRKDSPTRGNKRAYLLSGEAPALLYIPSGVAHGYRAGA 138
Query: 121 MNTEVIYKVTDFYSVEH--DSGVAWQ 144
++Y + + + + W
Sbjct: 139 RGATLLYAMNSQFDPRDPNEGRLPWD 164
>gi|288932729|ref|YP_003436789.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzyme
[Ferroglobus placidus DSM 10642]
gi|288894977|gb|ADC66514.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzyme
[Ferroglobus placidus DSM 10642]
Length = 166
Score = 72.4 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 15/150 (10%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ + + ++F D RG+F++ +D VQ N S ++ G +R H +
Sbjct: 2 LPGIVVKPLKRFADERGFFTEIMRKDW--SDIFKDEIVQANLSITY-PGIVRAWH--KHE 56
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEIS-ANNGLQIYIPTGFAHGFMTL-E 120
Q CI G I D + ++ IS +N + +P + HGF +
Sbjct: 57 RGQVDYFVCIKGAIKICVYDEKT------QELAEIISTGDNPQVVRVPGHYWHGFKAIGV 110
Query: 121 MNTEVIYKVTDFYSVE--HDSGVAWQDKSI 148
++Y V+ Y E + W D ++
Sbjct: 111 EPAMLVYFVSRLYDYENPDEVRRPWNDPTV 140
>gi|302343718|ref|YP_003808247.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfarculus baarsii DSM
2075]
gi|301640331|gb|ADK85653.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfarculus baarsii DSM
2075]
Length = 153
Score = 72.4 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V + + D RG + + D F Q + + G ++ H +
Sbjct: 4 ISGVHTKQLKVIPDERGRLMEILRRDDE----IFDGFGQVYMTTTL-PGVVKAWHLHKK- 57
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE-M 121
Q V C+ G I D R +SPT G + + L + IP HG+ +
Sbjct: 58 --QTDNVCCVFGMIRLGLFDDREDSPTRGVVNEFFMGMHRPLLVQIPPLVYHGWKCVSLE 115
Query: 122 NTEVIYKVTDFYS--VEHDSGVAWQDKSIDITW 152
++ VT+ Y + D +I + W
Sbjct: 116 EALIVNTVTEPYDYKDPDEFRRDAHDPAIPLDW 148
>gi|323701364|ref|ZP_08113038.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfotomaculum nigrificans
DSM 574]
gi|323533623|gb|EGB23488.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Desulfotomaculum nigrificans
DSM 574]
Length = 153
Score = 72.0 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/155 (21%), Positives = 53/155 (34%), Gaps = 15/155 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKL--LKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ V++ K R D RG+ + + F Q + G + H+ +
Sbjct: 4 ISGVQVKKLRLIPDERGYLMEMLRCDWPEFE------SFAQAYVTA-CYAGVYKAWHYHK 56
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
Q C++G + D R SPT G I N + + IP HGF
Sbjct: 57 L---QTDHFVCVSGMAKVVLFDDREESPTRGEINEFHIGQLNPVLLKIPPLVYHGFTAEG 113
Query: 121 M-NTEVIYKVTDFYS--VEHDSGVAWQDKSIDITW 152
+I T Y+ + + D +I W
Sbjct: 114 NAPALIINFPTQLYNYQQPDEYRRPYNDPAIPYNW 148
>gi|292656184|ref|YP_003536081.1| spore coat polysaccharide synthesis spsK [Haloferax volcanii DS2]
gi|291370459|gb|ADE02686.1| spore coat polysaccharide synthesis spsK [Haloferax volcanii DS2]
Length = 156
Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 57/155 (36%), Gaps = 11/155 (7%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI+ V + + D RG + + S E + +S ++ G +R H
Sbjct: 3 NIHDVEVRDLQVNADQRGHLVEVFRSDW-DEYEIDPEM--SYYSMTY-PGVVRAWHRHLE 58
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
Q C GRI D R +SPT G + I +N I IP HGF +
Sbjct: 59 --GQIDHFVCPKGRITVGIYDDREDSPTQGELDTFVIGEHNQQVIRIPGDCWHGFKAIGD 116
Query: 122 NTEVI--YKVT--DFYSVEHDSGVAWQDKSIDITW 152
++ Y D+ + + + + D I W
Sbjct: 117 EPSLLINYPTNLYDYEDPDEER-IPYDDDRIPYDW 150
>gi|110592087|gb|ABG77518.1| RfbC [Rhizobium leguminosarum bv. trifolii TA1]
Length = 166
Score = 71.6 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ +++ D RG F++T+ ++ GL V+ Q N S + + GT+RG+H+Q P
Sbjct: 88 VSGAFVVEIDARSDDRGMFARTFDAQTSAAQGLVPVYPQCNVSQNRERGTLRGMHYQAQP 147
Query: 63 YAQAKL 68
+
Sbjct: 148 RPEGSW 153
>gi|295695520|ref|YP_003588758.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus tusciae DSM
2912]
gi|295411122|gb|ADG05614.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Bacillus tusciae DSM
2912]
Length = 188
Score = 71.6 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 20/153 (13%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGL-----QDVFVQDNHSFSFDCGTIRGLH 57
I V+IL R F D G F++ L E G + Q N+S G ++ H
Sbjct: 33 IEGVQILDLRWFTDDGGAFTEL---ARLDEQGCLAVLPEFQVRQVNYSV-VLPGAVKAWH 88
Query: 58 F---QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
Q + VR + G +D+R +SPTY + + A +YIP G AH
Sbjct: 89 LHFNQEDVWFIPPTVRLLVG-----LLDVRASSPTYRNTMRFVMGAGKAQVLYIPRGVAH 143
Query: 115 GFMTL-EMNTEVIYKVTDFYSVE--HDSGVAWQ 144
G + + ++Y V + E ++ + W
Sbjct: 144 GVANIWAQDAYMMYLVNQQFDPEKPDENRLPWD 176
>gi|83309223|ref|YP_419487.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzyme
[Magnetospirillum magneticum AMB-1]
gi|82944064|dbj|BAE48928.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzyme
[Magnetospirillum magneticum AMB-1]
Length = 169
Score = 71.6 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 34/159 (21%), Positives = 57/159 (35%), Gaps = 13/159 (8%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKL--LKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
I+ + I+ RK D RG + + G + F + G I+ H
Sbjct: 21 KIHGLNIIPLRKIPDERGTIMHMLRADAPHFDKFG-EVYFA------TAYPGVIKAWHLH 73
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
QA+ CI G I + D R +SPT G + + N + + IP +G+ +
Sbjct: 74 TK---QAQNYCCIQGMIKLVCYDDRADSPTKGVLQEIVMGDLNYVLVQIPPLLINGWKCI 130
Query: 120 EMNTEVIYKVTD-FYSVEHDSGVAWQDKSIDITWPLLDT 157
T ++ D + + D +I W L
Sbjct: 131 GTQTALLANCADMPHDPTEMKRIDPFDPAIPYDWALKHG 169
>gi|328951359|ref|YP_004368694.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Marinithermus
hydrothermalis DSM 14884]
gi|328451683|gb|AEB12584.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Marinithermus
hydrothermalis DSM 14884]
Length = 182
Score = 71.6 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 54/146 (36%), Gaps = 4/146 (2%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDC-GTIRGLHFQR 60
I VR RK G F + K G F S S+ G I H
Sbjct: 26 EIAGVRFTPLRKHRALEGAFMEYLRLTGGKVEGFDTPFEVRQVSVSWAAPGRINAFHVH- 84
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
P Q ++ + G + VD+R S T G +S +YIP+G AHG+
Sbjct: 85 PKEVQDEVWCVVEGTLLVWLVDVREGSSTRGVRRRYVLSGEEPGLLYIPSGVAHGYRAGP 144
Query: 121 MNTEVIYKVTDFYSVEH--DSGVAWQ 144
++Y + + ++ E + + W
Sbjct: 145 EGAVLLYAMNNQFNPEDPNEGRLPWD 170
>gi|327400451|ref|YP_004341290.1| Cupin 2 barrel domain-containing protein [Archaeoglobus veneficus
SNP6]
gi|327315959|gb|AEA46575.1| Cupin 2 conserved barrel domain protein [Archaeoglobus veneficus
SNP6]
Length = 165
Score = 71.6 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 24/154 (15%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ + + ++F D RG+F++ E+ +D VQ N S ++ G +R H +
Sbjct: 2 LPGIVVKPLKRFADERGFFTEIMRKDW--EI-FEDEIVQANLSITY-PGIVRAWH--KHE 55
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISA-----NNGLQIYIPTGFAHGFM 117
Q C+ G I A D + E++ N + +P + HGF
Sbjct: 56 RGQVDYFVCVKGAIKICAYDD----------ETQELNEIVSTGENPQIVRVPGHYWHGFK 105
Query: 118 TLEMN-TEVIYKVTDFYSVE--HDSGVAWQDKSI 148
+ ++Y V Y E + W D ++
Sbjct: 106 AVGNEPAMLVYFVNKLYDYENPDEVRRPWNDPTV 139
>gi|282163187|ref|YP_003355572.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Methanocella
paludicola SANAE]
gi|282155501|dbj|BAI60589.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Methanocella
paludicola SANAE]
Length = 159
Score = 70.8 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 38/163 (23%), Positives = 57/163 (34%), Gaps = 15/163 (9%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKL--LKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
+I+ V + R D RG + + G V S G ++G H+
Sbjct: 5 SIDGVMTRQLRLNVDERGSLMEVMRPDWDVFERFGQVYV-------TSAYPGVVKGWHYH 57
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ Q C+ G + D R NSPT G I N L + IP HGF +
Sbjct: 58 KK---QYDNFVCVRGMMKVALFDSRDNSPTKGLLNEFFIGERNPLLVKIPPYVYHGFKCI 114
Query: 120 EMNTEVIYKVTDF---YSVEHDSGVAWQDKSIDITWPLLDTIL 159
N +I V Y+ + + K I W L ++
Sbjct: 115 GTNEALIVNVPTGLYDYNEPDEYRLPPDTKEIPYDWGLTPGLM 157
>gi|260220290|emb|CBA27681.1| Type IV pilus assembly protein pilF [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 596
Score = 70.8 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQD 42
I V +L+ + F D RG+F ++++ ++ +E G+ FVQ
Sbjct: 9 IADVLLLEPKVFGDERGFFFESFNERVFREATGVTLPFVQT 49
>gi|257387271|ref|YP_003177044.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzyme
[Halomicrobium mukohataei DSM 12286]
gi|257169578|gb|ACV47337.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzyme
[Halomicrobium mukohataei DSM 12286]
Length = 154
Score = 70.8 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 11/154 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V + + D RG + Y + D Q ++ G R H
Sbjct: 2 ISGVTLRDLQTNTDERGHLVEVYREDWDE----YDPSPQMSYYSMTYPGVTRAWHKHH-- 55
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ Q C GRI D R +SP+ G + I +N I IP HGF +
Sbjct: 56 HGQIDHFVCPKGRIKVGVYDDREDSPSQGELDTFVIGEHNQKVIRIPGECWHGFKAIGDE 115
Query: 123 TEVIY----KVTDFYSVEHDSGVAWQDKSIDITW 152
+ K+ D+ + + + + + I + W
Sbjct: 116 PAFLINFPSKLYDYENPDEER-LPYDTDKIPLDW 148
>gi|329768386|ref|ZP_08259880.1| hypothetical protein HMPREF0428_01577 [Gemella haemolysans M341]
gi|328837139|gb|EGF86780.1| hypothetical protein HMPREF0428_01577 [Gemella haemolysans M341]
Length = 60
Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 126 IYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID--SPFEY 181
+YK ++Y+VE D+G+A+ D+ + I W + D +SEKD+ LP + + + F+Y
Sbjct: 1 MYKCDNYYNVEADAGIAFDDEVLGIDWQI-DLSKAIISEKDKKLPTFKEFEKDNDFKY 57
>gi|301165718|emb|CBW25290.1| dTDP-D-glucose 4,6-dehydratase [Bacteriovorax marinus SJ]
Length = 145
Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 52/154 (33%), Gaps = 15/154 (9%)
Query: 3 INPVRILKTRKFEDSRGWFS---QTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
I V+I + D RG ++ ++ + G +N G I+ H+
Sbjct: 2 IEGVKITPLKTIADDRGKIMHMLRS-DAEHFSKFGEVYFSFVNN-------GVIKAWHYH 53
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ G+I + D R S T+G + +S + + +P +GF L
Sbjct: 54 KE---MTINYAVPVGKIDFVLYDSREESSTFGETQVITMSPEDYFLVTVPPRVWNGFKGL 110
Query: 120 EMNTEVIYKVTDFYSVEHDS-GVAWQDKSIDITW 152
++ TD + + + I W
Sbjct: 111 STEPAMVVNCTDIPHRGDEIERLDFNTDKIPFKW 144
>gi|90417249|ref|ZP_01225176.1| dTDP-4-dehydrorhamnose epimerase [marine gamma proteobacterium
HTCC2207]
gi|90331025|gb|EAS46286.1| dTDP-4-dehydrorhamnose epimerase [marine gamma proteobacterium
HTCC2207]
Length = 152
Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 59/157 (37%), Gaps = 15/157 (9%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKL--LKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I+ V + R+F D RG ++ G + S +F ++ H
Sbjct: 5 IDGVLLSPLRQFFDERGKVMHMLREDDDHFEKFG------EIYFSCTF-PDVVKAWH--- 54
Query: 61 PPYAQAK-LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+++ K C++G + + D R +S T+G + +S N + +P +GF +
Sbjct: 55 -KHSEMKLNYACVSGSVKVVLYDTRESSETFGRFNEFILSPENYYLLTVPPMVWNGFKAI 113
Query: 120 -EMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLL 155
V T + + +++ I+ W +
Sbjct: 114 GTQMATVANCATIAHRSNEITRLSYDASEINYDWNIK 150
>gi|15807713|ref|NP_285367.1| lipopolysaccharide biosynthesis protein [Deinococcus radiodurans
R1]
gi|6460560|gb|AAF12266.1|AE001862_92 lipopolysaccharide biosynthesis protein, putative [Deinococcus
radiodurans R1]
Length = 182
Score = 68.9 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 6/147 (4%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV--QDNHSFSFDCGTIRGLHFQ 59
I V +K G F + L V Q + S++ I H
Sbjct: 26 QIEGVWFHSLKKNRSENGAFMEYVRLDENGVQNLPGQLVPRQISVSWAAPKR-INAFHIH 84
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q ++ + G++ VD R SPT G L S + ++IP+G AHG+
Sbjct: 85 VKE-EQNEIWCVLQGQLTIWLVDCRAGSPTVGVKRKLVFSGEQPMMVHIPSGVAHGYQAG 143
Query: 120 EMNTEVIYKVTDFYSVEH--DSGVAWQ 144
E ++Y + +++E + + W
Sbjct: 144 ENGATLLYTMDAQFNIEDPNEGRLPWN 170
>gi|291296407|ref|YP_003507805.1| dTDP-4-dehydrorhamnose 3 5-epimerase [Meiothermus ruber DSM 1279]
gi|290471366|gb|ADD28785.1| dTDP-4-dehydrorhamnose 3 5-epimerase [Meiothermus ruber DSM 1279]
Length = 137
Score = 68.5 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 34 GLQDVF--VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYG 91
G F Q + S++ G I H P Q +L + G + VD+R +SPT G
Sbjct: 13 GFPLPFEARQISLSWAV-PGRINAFHLH-PKRTQDELWCVVQGALLVWLVDVRADSPTKG 70
Query: 92 CWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEH--DSGVAWQ 144
S +S +YIP+G AHG+ ++Y + D ++ + + W
Sbjct: 71 TKRSFLLSGEAPSLLYIPSGVAHGYRAGHQGALLLYAMNDQFNPSDPNEGRLPWD 125
>gi|254456484|ref|ZP_05069913.1| polysaccharide biosynthesis domain protein [Candidatus Pelagibacter
sp. HTCC7211]
gi|207083486|gb|EDZ60912.1| polysaccharide biosynthesis domain protein [Candidatus Pelagibacter
sp. HTCC7211]
Length = 149
Score = 65.4 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 13/156 (8%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKL--LKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V+I+ ++ D RG + + G + S+S T++ H +
Sbjct: 2 IEGVKIIPKKQIIDERGKIMHMMRNDDPNFTKFG------EIYFSYS-HPNTVKAWHLHK 54
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
C+ G+I + D R S T G + ++ N + +P +GF ++E
Sbjct: 55 R---MTVNYVCVIGKIKLVLFDDRPESSTKGELQEIFLTTENYSLVTVPARVWNGFKSVE 111
Query: 121 MNTEVIYKVTD-FYSVEHDSGVAWQDKSIDITWPLL 155
+I +D + E S + D + W +
Sbjct: 112 NKFSIIANCSDIPHEAEEMSRKPFDDPYFNYNWNIK 147
>gi|84498712|ref|ZP_00997453.1| dihydrolipoamide dehydrogenase [Janibacter sp. HTCC2649]
gi|84381012|gb|EAP96900.1| dihydrolipoamide dehydrogenase [Janibacter sp. HTCC2649]
Length = 87
Score = 65.1 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDC 50
+ I ++ R+F D RG F +++ LL + G + +Q N S S
Sbjct: 6 LAIEGAFVVTPRQFPDDRGVFLESFRGDLLAQHLGHRPDIIQTNVSVSSRA 56
>gi|258593513|emb|CBE69852.1| Spore coat polysaccharide biosynthesis protein spsL [NC10 bacterium
'Dutch sediment']
Length = 153
Score = 65.1 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 11/153 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V+ R+ D RG+ ++ S +E + F Q + ++ G ++G H+ +
Sbjct: 4 IDGVQTRLLRRVPDERGFLTELLRSDW-EEF---ERFGQAYITAAY-PGVVKGWHYHKK- 57
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM- 121
Q + G + D R NSPT G I N + IP HG+ +
Sbjct: 58 --QTDHFAGVLGMSKVVLFDPRDNSPTKGLINEFFIGEQNPTLVKIPPLVIHGYKPVGDR 115
Query: 122 -NTEVIYKVTDF-YSVEHDSGVAWQDKSIDITW 152
+ V + + Y + + I W
Sbjct: 116 MSAIVNFPTELYNYQEPDEFRIPHDSPDIPYDW 148
>gi|78043500|ref|YP_359824.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995615|gb|ABB14514.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Carboxydothermus
hydrogenoformans Z-2901]
Length = 158
Score = 65.1 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 10/121 (8%)
Query: 2 NINPVRILKT-RKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V I++ +K D RGW + + ++E + V S + G +RG H +
Sbjct: 7 EIEGV-IIRPLKKHIDERGWLCELFRQDEIEETIMP---VMSYISQTL-PGIVRGPHEHK 61
Query: 61 PPYAQAKLVRCIA-GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
Q I G D RR+S TYG + +N I +P G H + +
Sbjct: 62 E---QTDYFAFIGPGNFKIYLWDNRRDSSTYGNRQIIYAGEDNPAVIIVPPGVVHAYKNV 118
Query: 120 E 120
Sbjct: 119 S 119
>gi|154415789|ref|XP_001580918.1| dTDP-D-glucose 4,6-dehydratase [Trichomonas vaginalis G3]
gi|121915141|gb|EAY19932.1| dTDP-D-glucose 4,6-dehydratase, putative [Trichomonas vaginalis G3]
Length = 458
Score = 64.7 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 20/158 (12%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYS--SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHF 58
+ I V + + + D RG + + N SF + GL
Sbjct: 12 LKIEGVDSIDSPVYPDHRGTLYEAFHCLKADF-----DCSVAAVN-SFYPRRHVVYGLIS 65
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMT 118
++ I G++ + +D + + +E A G I IP+G G++
Sbjct: 66 IDG----DEIFHVIRGKLIVVLIDPKDH----KLHEIVE--AGPGKVIKIPSGVIRGYLA 115
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD 156
LE + VIY + + + + D + WP +
Sbjct: 116 LEED--VIYNIVRTSGNGNKTCYKFDDPEFGVKWPESE 151
>gi|258591669|emb|CBE67970.1| dTDP-4-dehydrorhamnose 3,5-epimerase [NC10 bacterium 'Dutch
sediment']
Length = 174
Score = 64.3 bits (156), Expect = 8e-09, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 60/162 (37%), Gaps = 23/162 (14%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKL-LKELGLQDVFVQDNHSFSFDCGTIRGL--HFQ 59
I+ VRI D RG + Y+S E V+V + + I+G H+Q
Sbjct: 23 IHDVRIRSAVTHPDERGTICEIYNSAWDFSEA--PVVYV---YQVTVRPQRIKGWVVHYQ 77
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM-T 118
Q V G + + D R+ SPT+G L IS +N ++IP G H
Sbjct: 78 -----QDDRVFVSQGVLKIVMYDPRKESPTHGMLNELCISEHNRGLLFIPRGVYHALQNV 132
Query: 119 LEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILP 160
+ I T Y+ D PL + ++P
Sbjct: 133 GTTDALFINMPTRAYN--------HADPD-KYRLPLNNDLIP 165
>gi|169840779|ref|ZP_02873892.1| dTDP-4-dehydrorhamnose 3,5-epimerase [candidate division TM7
single-cell isolate TM7a]
Length = 77
Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 43 NHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYG 91
N S +RGLHFQ + Q KLV I G ++D+AVD+R+ S T+G
Sbjct: 2 NSSLKISIRRLRGLHFQTK-HTQGKLVCVIKGSVYDVAVDLRKGSKTFG 49
>gi|257053209|ref|YP_003131042.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Halorhabdus utahensis DSM
12940]
gi|256691972|gb|ACV12309.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Halorhabdus utahensis DSM
12940]
Length = 155
Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 49/140 (35%), Gaps = 7/140 (5%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG ++ + S G + + S S+ G +R H Q G
Sbjct: 15 DERGTLTEIWRSDWDFFAGEDEPTM-SYLSESY-PGVVRAWHRHE--RGQIDHFVVPHGN 70
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN-TEVIYKVTDFYS 134
+ D R +SPT G + I +N I +P HGF + +I T+ Y
Sbjct: 71 VKVGIYDDREDSPTQGELDTYVIGEDNPTAIRVPGECWHGFKVIGDERATLINFPTNLYD 130
Query: 135 VE--HDSGVAWQDKSIDITW 152
E + + I + W
Sbjct: 131 YEDPDEQRLPPDTDEIPLDW 150
>gi|11500016|ref|NP_071261.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzyme
[Archaeoglobus fulgidus DSM 4304]
Length = 165
Score = 63.5 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 16/150 (10%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
+ + + + F D RG+F++ +D +Q N S ++ G +R H +
Sbjct: 2 LPGIVVKPLKTFADERGFFTEIMRRDW---DVFEDEILQANMSVTY-PGIVRAWH--KHE 55
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIY-IPTGFAHGFMTL-E 120
Q CI G I A D ++ +S LQ+ +P + HGF +
Sbjct: 56 RGQVDYFVCIGGAIKICAYDDET------QELAEIVSTGKNLQVVRVPGHYWHGFKAIGV 109
Query: 121 MNTEVIYKVTDFYSVE--HDSGVAWQDKSI 148
++Y V+ Y E + W D +I
Sbjct: 110 EPAVLVYFVSRLYDYENPDEVRRPWNDSTI 139
>gi|296159895|ref|ZP_06842716.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Burkholderia
sp. Ch1-1]
gi|295889878|gb|EFG69675.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Burkholderia
sp. Ch1-1]
Length = 313
Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 8/30 (26%), Positives = 20/30 (66%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKE 32
+ V+I++ + F D+RG+F +++++K
Sbjct: 10 LPEVKIIEPKVFGDARGFFFESFNAKEFVA 39
>gi|114798886|ref|YP_759519.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Hyphomonas neptunium
ATCC 15444]
gi|114739060|gb|ABI77185.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Hyphomonas neptunium
ATCC 15444]
Length = 130
Score = 62.0 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/180 (18%), Positives = 52/180 (28%), Gaps = 58/180 (32%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
+I + ++K R+F + Y + G +QDN +R LH Q
Sbjct: 6 SIPEIFLVKVRRF--------EVYRQAPYDQNGPSGPILQDNQPLPHARSLLRWLHVQI- 56
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+G+ +IR
Sbjct: 57 ---------VPSGQAK--LSNIR------------------------------------D 69
Query: 122 NTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQIDSPFEY 181
+Y+ D +AW SI I WPL P SEK P L+ + F+Y
Sbjct: 70 TLASVYRQKMA-DRALDRCLAWNAPSIAIDWPLQ-GNAPIQSEKVAAQPNLSDLPDYFQY 127
>gi|268316910|ref|YP_003290629.1| dTDP-4-dehydrorhamnose 3 5-epimerase and related enzymes-like
protein [Rhodothermus marinus DSM 4252]
gi|262334444|gb|ACY48241.1| dTDP-4-dehydrorhamnose 3 5-epimerase and related enzymes-like
protein [Rhodothermus marinus DSM 4252]
Length = 157
Score = 60.8 bits (147), Expect = 9e-08, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 7/114 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I +++ED+RGW ++ + L V S + G RG H R
Sbjct: 8 IEGVVIRPLKRYEDARGWLAEFFRQDELDPSVYP---VMGYVSLT-HPGITRGPHEHRE- 62
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
Q L G + D R +SPTY L++ + + +P G H +
Sbjct: 63 --QTDLFVFFHGHLRLYLWDARPDSPTYSHRQVLDVGEAHPVTALVPPGVVHAY 114
>gi|260460940|ref|ZP_05809190.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mesorhizobium opportunistum
WSM2075]
gi|259033517|gb|EEW34778.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mesorhizobium opportunistum
WSM2075]
Length = 169
Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 11/139 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ VRI + R S G+ ++ + + + Q + G + G H
Sbjct: 23 IDGVRIKEIRPVATSNGYLTEVFRDEWELDQLPVGQVFQ----RTMYPGAVTGWHAHNVT 78
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ + C AG + D R+ SP++G + A + IP G HG L
Sbjct: 79 LDR---LFCCAGSVRISLYDGRKASPSFGAVWHKIVGALRPAIVIIPPGVWHGVTALGPE 135
Query: 123 TEVIY-KVTDFY---SVEH 137
T ++ V Y + +H
Sbjct: 136 TAMLLNLVDKAYAYDAPDH 154
>gi|148264901|ref|YP_001231607.1| dTDP-4-dehydrorhamnose 3 5-epimerase and related enzymes-like
protein [Geobacter uraniireducens Rf4]
gi|146398401|gb|ABQ27034.1| dTDP-4-dehydrorhamnose 3 5-epimerase and related enzymes-like
protein [Geobacter uraniireducens Rf4]
Length = 162
Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 10/117 (8%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V + K+ D RGW ++ + + L + G+ V + + G RG H
Sbjct: 11 KIHDVIVKPLGKYLDERGWLAELFRADEL-DAGIMPVMAYISMT---QPGVARGPHEHVE 66
Query: 62 PYAQAKLVRCIAG--RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
Q C G D R++SPTYG + + + + +P G H +
Sbjct: 67 ---QTDY-FCFIGPSNFKVYLWDRRKDSPTYGVKQVVYTGVDLPMMMVVPPGVVHAY 119
>gi|324998556|ref|ZP_08119668.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Pseudonocardia sp. P1]
Length = 175
Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 5/102 (4%)
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPT 110
G + GLH A L+ G + + +D R + T+G + + +P
Sbjct: 43 GAVHGLHGH---PDGAVLLGVPRGSGYAVVIDTRPAAETFGRLAVALLDG--PRTLLVPP 97
Query: 111 GFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITW 152
G +G + NT V + S V D + I W
Sbjct: 98 GCLYGVQAVTGNTLVEIRTATRPSRRDRLEVDPDDPDLKIRW 139
>gi|296109922|ref|YP_003616871.1| dTDP-4-dehydrorhamnose 35-epimerase related protein
[Methanocaldococcus infernus ME]
gi|295434736|gb|ADG13907.1| dTDP-4-dehydrorhamnose 35-epimerase related protein
[Methanocaldococcus infernus ME]
Length = 39
Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLK 31
+ I V ++K + F D RG+F +TY K
Sbjct: 8 LEIPGVILIKPKVFGDERGFFMETYKKSDFK 38
>gi|253700377|ref|YP_003021566.1| dTDP-4-dehydrorhamnose 3 5-epimerase [Geobacter sp. M21]
gi|251775227|gb|ACT17808.1| dTDP-4-dehydrorhamnose 3 5-epimerase and related enzymes-like
protein [Geobacter sp. M21]
Length = 162
Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 10/116 (8%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V + KF D RGW + + S L+ L + S + G RG H
Sbjct: 12 IHDVVLKPLGKFLDERGWLCELFRSDELEPSVLPAM---TYVSMT-QPGVTRGPHEHVE- 66
Query: 63 YAQAKLVRCIAG--RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
Q C G D R +SP+ G + + + + +P G AH +
Sbjct: 67 --QTDY-FCFMGPSNFKVYLWDTRPDSPSRGVRQVVYAGLDAPMAMIVPPGVAHAY 119
>gi|148508210|gb|ABQ75998.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzyme [uncultured
haloarchaeon]
Length = 156
Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 15/144 (10%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG ++ + S G + + ++ G IR H Q G+
Sbjct: 15 DERGQLTEIWRSDWDFYAGDDEP--KMSYFSETHPGIIRAWHRHH--RGQIDHFVVPRGK 70
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV-------IYK 128
D R SPT G + + N I +P HGF + + +Y
Sbjct: 71 AKVGIYDDREESPTQGEVDTYIVGEGNANAIRVPGDCWHGFKAVGDERVLLLNFPTNLY- 129
Query: 129 VTDFYSVEHDSGVAWQDKSIDITW 152
D+ + + + + +I + W
Sbjct: 130 --DYDDPDEER-IPYDTDTIPLDW 150
>gi|23016868|ref|ZP_00056620.1| COG1898: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
[Magnetospirillum magnetotacticum MS-1]
Length = 161
Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 13/158 (8%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYS--SKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V + R+ D RG E G + + S G ++ H +
Sbjct: 14 IEGVTVTPMRRICDERGKIMHLMKKTDPQFTEFG-------EVYISSGYPGIVKAWHIHK 66
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
CI G + + D R SPT G + + +N +Q+ IP G ++G+
Sbjct: 67 E---MTLNNTCIVGMMKLVLFDGRDGSPTKGNLMECFMGEDNYIQVKIPPGISNGYKAYG 123
Query: 121 MNTEVIYKV-TDFYSVEHDSGVAWQDKSIDITWPLLDT 157
++ + + + + I W +
Sbjct: 124 DKLAMLVNCASMPHDPNELIYIDPFNNDIPYNWDVKHG 161
>gi|222056562|ref|YP_002538924.1| dTDP-4-dehydrorhamnose 3 5-epimerase and related enzymes-like
protein [Geobacter sp. FRC-32]
gi|221565851|gb|ACM21823.1| dTDP-4-dehydrorhamnose 3 5-epimerase and related enzymes-like
protein [Geobacter sp. FRC-32]
Length = 158
Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 10/117 (8%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V + K+ D RGW ++ Y S + E + V S + G RG H
Sbjct: 7 KIHDVLVRPLTKYLDERGWLAELYRSDEIAEEIMP---VMAYISMT-QPGVARGPHEHV- 61
Query: 62 PYAQAKLVRCIAG--RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
Q C G D R+NSPTYG + + + + +P G H +
Sbjct: 62 --DQTDY-FCFIGPSNFKIYLWDNRKNSPTYGVKQVIFAGQDVPMMMTVPPGVVHAY 115
>gi|299134616|ref|ZP_07027808.1| polysaccharide biosynthesis protein [Afipia sp. 1NLS2]
gi|298590426|gb|EFI50629.1| polysaccharide biosynthesis protein [Afipia sp. 1NLS2]
Length = 185
Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 11/149 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I V I + D+RG + +++ + + V + G++R + R
Sbjct: 39 IEGVTITPLARRTDNRGSLIELLTTRD----NIIEPIVHV-YLVEAKAGSVRAWVYHRR- 92
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM- 121
Q + G DIR SPT+ L + + IP HG +
Sbjct: 93 --QHDRLAYTQGCFQVALYDIREKSPTFKKLSVLTFGKDRPAMLRIPPYVVHGVKNIGDE 150
Query: 122 NTEVIYKVTDFYSVE--HDSGVAWQDKSI 148
++ + T+ Y + S ++ D I
Sbjct: 151 DSTFVNLPTNIYDPKNPDKSRISASDPRI 179
>gi|197118840|ref|YP_002139267.1| nucleoside diphosphate-sugar dehydratase [Geobacter bemidjiensis
Bem]
gi|197088200|gb|ACH39471.1| nucleoside diphosphate-sugar dehydratase, putative [Geobacter
bemidjiensis Bem]
Length = 162
Score = 57.7 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 10/116 (8%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V + KF D RGW + + S L++ L + S + G RG H
Sbjct: 12 IHDVVLKPLGKFLDERGWLCELFRSDELEQSVLPAM---TYVSMT-QPGVTRGPHEHV-- 65
Query: 63 YAQAKLVRCIAG--RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
Q C G D R +SP+ G + + L + +P G H +
Sbjct: 66 -DQTDY-FCFMGPSNFKVYLWDTRPDSPSRGVRQVVYAGLDAPLAMIVPPGVVHAY 119
>gi|218459038|ref|ZP_03499129.1| dTDP-4-dehydrorhamnose 3,5-epimerase protein [Rhizobium etli Kim
5]
Length = 53
Score = 57.7 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSF 48
I + + +F D RG+FS+ + +E +FVQ++ S S
Sbjct: 8 IQGIVAITPPRFGDHRGYFSEVFKDAWFRENVADVMFVQEHESLSA 53
>gi|171911237|ref|ZP_02926707.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Verrucomicrobium spinosum DSM
4136]
Length = 197
Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 16/152 (10%)
Query: 3 INPVRI--LKTRKFEDSRG-WFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
I+ V + +K + RG ++ Y + K + V S G + H
Sbjct: 51 IDGVYVRDVKNVVY---RGGLLTELYRPEWFK----DEFPVGHVVHVSLLPGLVTQWHCH 103
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL 119
+ Q +V + G + D R SPT+G +L + + ++IP G H +
Sbjct: 104 ---HIQRDIVFPVRGYLRIGLYDARPESPTHGKSFALNFNLHRPRYLHIPPGVWHCLRNI 160
Query: 120 EMNTEVIYKVTDF---YSVEHDSGVAWQDKSI 148
+ V + D Y D +A ++
Sbjct: 161 GADESVFIVLNDVAFDYENPDDWTLAPDSPAL 192
>gi|168701093|ref|ZP_02733370.1| hypothetical protein GobsU_16317 [Gemmata obscuriglobus UQM 2246]
Length = 164
Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 45/121 (37%), Gaps = 10/121 (8%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V + + F D RGW + + + L+ V S + G RG H
Sbjct: 14 IHDVAWIPLKFFTDPRGWLVELFRNDLVPPAFHP---VMAYVSMT-KPGVARGPHEHV-- 67
Query: 63 YAQAKLVRCIAG--RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
QA C G D R+ SPT+G E+ + +P+G HG+ +
Sbjct: 68 -DQADY-FCFTGPSTFRVCLWDARKTSPTFGQKEVREVGEGEPFALIVPSGVVHGYKNVG 125
Query: 121 M 121
Sbjct: 126 D 126
>gi|322419833|ref|YP_004199056.1| dTDP-4-dehydrorhamnose 35-epimerase-like protein [Geobacter sp.
M18]
gi|320126220|gb|ADW13780.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Geobacter sp.
M18]
Length = 162
Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 39/116 (33%), Gaps = 10/116 (8%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I+ V KF D RGW ++ + + L V S + G RG H
Sbjct: 12 IHDVVCKPLTKFLDERGWLTELFRNDELDP---DIAPVMSYISMT-QPGVARGPHEHL-- 65
Query: 63 YAQAKLVRCIAG--RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
Q C G D R SPT+G + + + +P G H +
Sbjct: 66 -DQTDY-FCFLGPSNFKVYLWDARPGSPTFGVKQVVYAGVDAPTMMVVPPGVVHAY 119
>gi|78222145|ref|YP_383892.1| hypothetical protein Gmet_0925 [Geobacter metallireducens GS-15]
gi|78193400|gb|ABB31167.1| conserved hypothetical protein [Geobacter metallireducens GS-15]
Length = 162
Score = 55.0 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 10/117 (8%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V + KF D RGW ++ + S + + S + G RG H
Sbjct: 11 KIHDVAVRPLTKFLDERGWLAELFRSDETDAATMPAM---AYLSMT-QPGVARGPHEHV- 65
Query: 62 PYAQAKLVRCIAG--RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
Q C G D R S T+G ++ + L + +P G H +
Sbjct: 66 --DQTDW-FCFIGPSNFKVYLWDARPTSATFGVKQTIYAGIDAPLAMIVPPGVVHAY 119
>gi|169839060|ref|ZP_02872248.1| dTDP-4-dehydrorhamnose 3,5-epimerase [candidate division TM7
single-cell isolate TM7a]
Length = 33
Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 105 QIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135
P GFAHGF+TLE TE YK TD Y+
Sbjct: 1 MFTXPEGFAHGFLTLEDETEFTYKCTDLYTP 31
>gi|289522631|ref|ZP_06439485.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289504467|gb|EFD25631.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 159
Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V I K K D RG+ +T+ L E + S++ + G RG H +
Sbjct: 7 QIEGVLIKKLVKHVDERGFLVETFRIDELPENLRPLM---SYVSYT-EPGITRGPHEHK- 61
Query: 62 PYAQAKLVRCIA-GRIFDIAVDIRRNSPTYGCW 93
AQ + I G D RR+S TYG +
Sbjct: 62 --AQTDIFSFIGPGNFMVKLWDNRRDSKTYGNY 92
>gi|39997180|ref|NP_953131.1| hypothetical protein GSU2082 [Geobacter sulfurreducens PCA]
gi|39984070|gb|AAR35458.1| conserved hypothetical protein [Geobacter sulfurreducens PCA]
gi|298506193|gb|ADI84916.1| nucleoside diphosphate-sugar dehydratase, putative [Geobacter
sulfurreducens KN400]
Length = 162
Score = 51.6 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 10/117 (8%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V + KF D RGW ++ + S + V S + G RG H
Sbjct: 11 KIHDVVVKPLGKFLDERGWLAELFRSDETDPATMP---VMAYVSMT-RPGIARGPHEHV- 65
Query: 62 PYAQAKLVRCIAG--RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
Q C G D R +SPT+G +L + + + +P G H +
Sbjct: 66 --DQTDW-FCFIGPSNFKVYLWDSRPDSPTHGVKQTLFAGIDAPMSVIVPPGVVHAY 119
>gi|255037679|ref|YP_003088300.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dyadobacter fermentans DSM
18053]
gi|254950435|gb|ACT95135.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Dyadobacter fermentans DSM
18053]
Length = 177
Score = 51.6 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 42/145 (28%), Gaps = 21/145 (14%)
Query: 19 GWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFD 78
G+ ++ Y + D Q S G I H + G I
Sbjct: 47 GFLTEIYRQDWELDNLTVDQIFQ----VSLLPGGISAWHAHEIT---TDRIFVNTGLIKV 99
Query: 79 IAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE-MNTEVIYKVTDFYSVEH 137
+ D R SPTYG A L I +P HG + ++ V Y
Sbjct: 100 VLYDAREESPTYGQINEFRCGALRPLLIIVPPRVWHGVQNFTNEHAALLNIVDKAY---- 155
Query: 138 DSGVAWQDKSIDITW--PLLDTILP 160
+ D W PL +P
Sbjct: 156 ----QYDDPD---HWRIPLDSPEIP 173
>gi|256819947|ref|YP_003141226.1| WxcM domain-containing protein [Capnocytophaga ochracea DSM 7271]
gi|256581530|gb|ACU92665.1| WxcM domain protein [Capnocytophaga ochracea DSM 7271]
Length = 144
Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 60/152 (39%), Gaps = 17/152 (11%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+ ++ F D RG S + + + +E+ + F+ D +RG H +
Sbjct: 3 EVKTIQGEIFTDHRGQIS-SLNDFVFEEV-ERFYFI-----HHPDKNVVRGWHGHQ---H 52
Query: 65 QAKLVRCIAGRIFDIAV---DIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+ K C+ G V D S T +++S + + +P G+A+ E
Sbjct: 53 EKKWFYCVKGSFTIALVQPDDWNNPS-TNLPADIIQLSEKDSKILCVPEGYANCIKAGED 111
Query: 122 NTEVIYKVTDFYSVE-HDSGVAWQDKSIDITW 152
N+ ++ + + E ++ + D + + W
Sbjct: 112 NSILLVF-SGKRNPEAYEDSWRY-DSHLWVDW 141
>gi|307826092|ref|ZP_07656304.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Methylobacter
tundripaludum SV96]
gi|307732830|gb|EFO03695.1| dTDP-4-dehydrorhamnose 35-epimerase related protein [Methylobacter
tundripaludum SV96]
Length = 41
Score = 50.8 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 138 DSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176
+ +AW D SI I WP+ P++S KDQ L +
Sbjct: 2 ERSIAWNDPSIGIHWPIQGE--PALSAKDQLGKSLVDAE 38
>gi|171910149|ref|ZP_02925619.1| hypothetical protein VspiD_03235 [Verrucomicrobium spinosum DSM
4136]
Length = 245
Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 58/173 (33%), Gaps = 34/173 (19%)
Query: 2 NINPVRILKTRKFEDS-RGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
I V + R F RG+FS+ ++ + LG ++ + + GT +G H
Sbjct: 54 GIPGVEVFHRRVFHQRYRGYFSE-FAREGEALLGKIGLWPKQWATAKMYSGTSKGFHIHP 112
Query: 61 P--------------------------PYA--QAKLVRCIAGRIFDIAVDIRRNSPTYGC 92
P PY Q ++ I G +D R P
Sbjct: 113 PAIPADATPEAWFKRLFVEEPTNYALRPYDKEQWDVMFFIQGICEMFLIDERAGMPRKKM 172
Query: 93 WVSLE---ISANNGLQIYIPTGFAHGFM-TLEMNTEVIYKVTDFYSVEHDSGV 141
+E + + + + IP G AH + ++Y + + E++ +
Sbjct: 173 RFIIEGDDLRGESNVGVVIPAGVAHAIRSASSQDLIMVYGTSTVFLPENEGRI 225
>gi|218887000|ref|YP_002436321.1| polysaccharide biosynthesis domain-containing protein
[Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218757954|gb|ACL08853.1| polysaccharide biosynthesis domain-containing protein
[Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 149
Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEIS-ANNGLQIYIPTGFAHGFMTLEMNT 123
Q + GR+ + D R SPT+G + ++ + IP +GF +
Sbjct: 60 QTQHFAVPVGRMKVVIHDSRPGSPTFGVTEEFLLGRPDDYRLLRIPPLVWYGFTAVGETP 119
Query: 124 EVIYKVTD-FYSV-EHDSGVAWQDKSIDITW 152
+I D + E + I W
Sbjct: 120 ALICNCADIPHDPTESERAPR-DAPEIPYRW 149
>gi|153009545|ref|YP_001370760.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ochrobactrum anthropi ATCC
49188]
gi|151561433|gb|ABS14931.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ochrobactrum anthropi ATCC
49188]
Length = 181
Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 43/113 (38%), Gaps = 7/113 (6%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ + ++ + D RG ++ Y + D V ++ F+ G ++G +
Sbjct: 30 LDGMSFYESIRHSDDRGSVTEIYDPRW---NWHPDPMV-FSYMFTIRPGMVKGWGLHKEH 85
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115
+ I+G + + D R S TY + +S + + +P H
Sbjct: 86 EDRY---FVISGELELVLFDPRPESSTYNKICKVYLSGSQPRLVNVPKFVWHA 135
>gi|84498717|ref|ZP_00997458.1| hypothetical protein JNB_00060 [Janibacter sp. HTCC2649]
gi|84381017|gb|EAP96905.1| hypothetical protein JNB_00060 [Janibacter sp. HTCC2649]
Length = 41
Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQ 36
+ I ++ R+F D RG F +++ LL +
Sbjct: 6 LAIEGAFVVTPRQFPDDRGVFLESFRGDLLAQHLGH 41
>gi|13474438|ref|NP_106006.1| polysaccharide biosynthesis protein [Mesorhizobium loti MAFF303099]
gi|14025191|dbj|BAB51792.1| mll5319 [Mesorhizobium loti MAFF303099]
Length = 176
Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 11/149 (7%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
I VR+ + D RG + + L + S + G+IR + +
Sbjct: 31 IAGVRMQRLVTRGDKRGELTVL-----MSALLEPITPPPHVYLVSAEAGSIRAWVYHKR- 84
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM- 121
Q + G + + D+R +SPTY L++ A N + + IP HG
Sbjct: 85 --QFDRLAYTNGDLRVVLYDLREDSPTYQKLEVLDVGAANKILLTIPPYVVHGIQNRGKS 142
Query: 122 NTEVIYKVTDFYSVEH--DSGVAWQDKSI 148
I T Y +H S + + I
Sbjct: 143 TATFINMPTTVYDPKHPDKSRIPFDHPGI 171
>gi|150006509|ref|YP_001301253.1| hypothetical protein BVU_4029 [Bacteroides vulgatus ATCC 8482]
gi|294778874|ref|ZP_06744291.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
gi|149934933|gb|ABR41631.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
gi|294447327|gb|EFG15910.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
Length = 158
Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNG---LQIYIPTGFAHGFMTLEMNTEVIY 127
CI G+I + D R NS T+G ++ + +S +I IP G GF+ + ++
Sbjct: 66 CIVGKIHFVLYDGRENSSTFGKYMEVILSPELPELYRRITIPAGVWMGFVGIGEGKSILL 125
Query: 128 KVTD-FYSV 135
V + +
Sbjct: 126 NVANIPHDP 134
>gi|91793158|ref|YP_562809.1| hypothetical protein Sden_1802 [Shewanella denitrificans OS217]
gi|91715160|gb|ABE55086.1| hypothetical protein Sden_1802 [Shewanella denitrificans OS217]
Length = 431
Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM-NTEVIYKVTDFYS 134
+ + +D R NS T+ LEI ++ + IP G AH F LE NT Y + Y
Sbjct: 73 VTAMFIDCRVNSRTFKSRFILEIEPSSKRMLCIPPGIAHTFEGLENINTINHY---NLYL 129
Query: 135 VE----HDSGVAWQ-DKS-IDITWPLLDTILPSV 162
+ + W D I+I + D +P +
Sbjct: 130 PKPEDWLEDKTRWDMDGDIINIPTDINDDDIPEL 163
Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 80 AVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDS 139
VD R+ S T LE S + + IP G AH F LE +S + S
Sbjct: 295 LVDCRKGSATLHAKERLEFSPSPLHYLIIPPGVAHSFEALEE--VFTINRPAVFSKDWQS 352
Query: 140 GVAWQDKSIDITWPLLDTILPS 161
+ D I WPL + P
Sbjct: 353 YDSGNDV---IDWPLSNEDYPV 371
>gi|226329714|ref|ZP_03805232.1| hypothetical protein PROPEN_03626 [Proteus penneri ATCC 35198]
gi|225202900|gb|EEG85254.1| hypothetical protein PROPEN_03626 [Proteus penneri ATCC 35198]
Length = 264
Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+I +D R+NSPT+ +S EI+ ++ + IP G AH F LE
Sbjct: 77 KILAKFIDCRKNSPTFKSELSFEITPSSARTLIIPPGVAHTFSYLEN 123
>gi|213585952|ref|ZP_03367778.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 72
Score = 48.1 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 3 INPVRILKTRKFEDSRGWFS 22
I V IL+ + F D RG+F
Sbjct: 8 IPDVLILEPKVFGDERGFFL 27
>gi|322700545|gb|EFY92299.1| oxalate decarboxylase oxdC, putative [Metarhizium acridum CQMa 102]
Length = 411
Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G IR LH+ R A+ GRI AVD G + + E+ N G Y
Sbjct: 115 KKGAIRELHWHRV----AEWGFVYKGRILVSAVDEN------GKYQAEEL--NYGDIWYF 162
Query: 109 PTGFAHGFMTLEMNTEVI 126
P G AH LE E +
Sbjct: 163 PKGVAHTVQGLEDENEFL 180
>gi|71906896|ref|YP_284483.1| dTDP-4-dehydrorhamnose epimerase [Dechloromonas aromatica RCB]
gi|71846517|gb|AAZ46013.1| dTDP-4-dehydrorhamnose epimerase [Dechloromonas aromatica RCB]
Length = 158
Score = 47.7 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 49/155 (31%), Gaps = 16/155 (10%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYS--SKLLKELGLQDVFVQDNHSFS-FDCGTIRGLHFQ 59
I V + R+ D RG + G FS G I+G
Sbjct: 9 IQGVTLTPLREIRDDRGALLHMLRCDAPDFTRFG--------ECYFSEVSAGAIKGWKRH 60
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEIS-ANNGLQIYIPTGFAHGFMT 118
R Q + +GRI + D R +S + G LE+ + +++ I G + F
Sbjct: 61 RL---QTQNFAVPSGRIRLVVFDERPDSKSRGATQVLELGRPDQYVRVTIAPGLWYAFAA 117
Query: 119 LEMNTEVIYKVTD-FYSVEHDSGVAWQDKSIDITW 152
L ++ D + + I W
Sbjct: 118 LGNMPALLANCADLPHDPNESETLPLDTPLIPFRW 152
>gi|220904148|ref|YP_002479460.1| polysaccharide biosynthesis domain-containing protein
[Desulfovibrio desulfuricans subsp. desulfuricans str.
ATCC 27774]
gi|219868447|gb|ACL48782.1| polysaccharide biosynthesis domain-containing protein
[Desulfovibrio desulfuricans subsp. desulfuricans str.
ATCC 27774]
Length = 165
Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEIS---ANNGLQIYIPTGFAHGFMTLEM 121
Q + G + + D R +SPT G V E++ N + IPTG +GF +
Sbjct: 71 QVQHFAVPTGLLRIVLYDGRPDSPTEG--VVCELALGRPENYFLLRIPTGVWYGFAAMGD 128
Query: 122 NTEVIYKVTD-FYSVEHDSGVAWQDKSIDITW 152
+I D + + D SI W
Sbjct: 129 APALICNCADIPHDPAEGQRLPVDDPSIPYCW 160
>gi|169841370|ref|ZP_02874483.1| hypothetical protein cdivTM_29733 [candidate division TM7
single-cell isolate TM7a]
Length = 39
Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 117 MTLE-MNTEVIYKVTDFYSVEHDSGVAWQDKS 147
L TE YK TD Y+ E+DSG+ W D+
Sbjct: 8 CALSGSETEFTYKCTDLYAPEYDSGILWNDEQ 39
>gi|304315460|ref|YP_003850607.1| dTDP-4-dehydrorhamnose 3,5-epimerase-related protein
[Methanothermobacter marburgensis str. Marburg]
gi|302588919|gb|ADL59294.1| dTDP-4-dehydrorhamnose 3,5-epimerase-related protein
[Methanothermobacter marburgensis str. Marburg]
Length = 88
Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL-EMNTEVIYKVTDFY 133
+ D RR+SPTYG + + +YIP G HG + VI + Y
Sbjct: 2 EWLNWLYDYRRDSPTYGIINEIFMGERYPRAVYIPPGIFHGTKNIGTDIAVVIGMPSLLY 61
Query: 134 SVE--HDSGVAWQDKSI 148
E + + D +
Sbjct: 62 DPENVDERRLDPNDNDL 78
>gi|166033583|ref|ZP_02236412.1| hypothetical protein DORFOR_03309 [Dorea formicigenerans ATCC
27755]
gi|166026768|gb|EDR45525.1| hypothetical protein DORFOR_03309 [Dorea formicigenerans ATCC
27755]
Length = 397
Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 20/125 (16%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D RG F++ L Q + + S G +G H+ + Q + G
Sbjct: 283 CDDRGSFTE---------LVHTVDCGQVSINIS-KPGITKGQHWHNSKWEQFI---VVHG 329
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE--MNTEVIYKVTDF 132
+I G V E+S + IY+ G+ H + L + + +
Sbjct: 330 HGLIQERNINT-----GETVEFEVSGDKIEAIYMIPGWTHNIINLSETEDLVTVMTCNEV 384
Query: 133 YSVEH 137
+ H
Sbjct: 385 FDPGH 389
>gi|227357100|ref|ZP_03841470.1| DTDP-6-deoxy-D-glucose-3,5-epimerase [Proteus mirabilis ATCC 29906]
gi|227162792|gb|EEI47755.1| DTDP-6-deoxy-D-glucose-3,5-epimerase [Proteus mirabilis ATCC 29906]
Length = 430
Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+I +D R+NSPT+ +SLEI+ ++ + IP G AH F LE
Sbjct: 77 KILAKFIDCRKNSPTFKSELSLEITPSSARTLIIPPGVAHTFSHLEN 123
Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 23/110 (20%)
Query: 55 GLHFQRPPYAQAKLVRC---IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTG 111
GLH Q + +G+I VD+R +SPT + +++ IP G
Sbjct: 277 GLHL-----GQEDHLTFLGNTSGKITIKLVDMREDSPTLFYEDEMVFDPAPNIELVIPCG 331
Query: 112 FAHGFMTLEMNTE----VIYKVTD-FYSVEHDSGVAWQDKSIDITWPLLD 156
AH + VIY + Y HD I W + +
Sbjct: 332 VAHALFNMANIITVNRPVIYLDEEKEYIPGHDV----------IDWKIAN 371
>gi|197287206|ref|YP_002153078.1| DTDP-6-deoxy-D-glucose-3,5-epimerase [Proteus mirabilis HI4320]
gi|194684693|emb|CAR46656.1| putative DTDP-6-deoxy-D-glucose-3,5-epimerase [Proteus mirabilis
HI4320]
Length = 430
Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+I +D R+NSPT+ +SLEI+ ++ + IP G AH F LE
Sbjct: 77 KILAKFIDCRKNSPTFKSELSLEITPSSARTLIIPPGVAHTFSHLEN 123
Score = 36.6 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 23/110 (20%)
Query: 55 GLHFQRPPYAQAKLVRCI---AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTG 111
GLH Q + + +G+I VD+R +SPT + +++ IP G
Sbjct: 277 GLHL-----GQEDHLTFLGNSSGKITIKLVDMREDSPTLFYEDEMVFDPAPNIELVIPCG 331
Query: 112 FAHGFMTLEMNTE----VIYKVTD-FYSVEHDSGVAWQDKSIDITWPLLD 156
AH + VIY + Y HD I W + +
Sbjct: 332 VAHALFNMANIITVNRPVIYLDEEKEYIPGHDV----------IDWKIAN 371
>gi|284039660|ref|YP_003389590.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Spirosoma linguale DSM 74]
gi|283818953|gb|ADB40791.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Spirosoma linguale DSM 74]
Length = 173
Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 41/145 (28%), Gaps = 21/145 (14%)
Query: 19 GWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFD 78
G ++ Y L D V G I H + G +
Sbjct: 44 GHLTEIYRKDW----QLDDSPVDQVFQIMMQPGGISAWHAHEST---TDRLFVTLGTMKI 96
Query: 79 IAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE-VIYKVTDFYSVEH 137
+ D R+ SPT+G +S I +P HG + N ++ V Y
Sbjct: 97 VLYDSRQLSPTFGQINEFLVSDLRPQLISVPPQVWHGVKNISANAALMLNLVDKAY---- 152
Query: 138 DSGVAWQDKSIDITW--PLLDTILP 160
+ D W P +P
Sbjct: 153 ----QYDDPD---HWRVPADSPAIP 170
>gi|315225356|ref|ZP_07867170.1| conserved hypothetical protein [Capnocytophaga ochracea F0287]
gi|314944629|gb|EFS96664.1| conserved hypothetical protein [Capnocytophaga ochracea F0287]
Length = 144
Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 13/150 (8%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V+ ++ F D RG S + + + E + F+ D +RG H +
Sbjct: 3 EVKTIQGEIFTDYRGQIS-SLNDFVF-EGVERFYFI-----HHPDKNVVRGWHGHQ---H 52
Query: 65 QAKLVRCIAGRIFDIAVDIR--RNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ K C+ G V I + T + +S + + +P G+A+ E
Sbjct: 53 EKKWFYCVKGSFTIALVQIDNWKQPSTDLVADIIPLSEKDSKIVCVPEGYANCIKAGEDG 112
Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITW 152
+ ++ ++ + DK + + W
Sbjct: 113 SILLVFSGKRVPEAYEDSWRY-DKDLWVDW 141
>gi|332522453|ref|ZP_08398705.1| NAD dependent epimerase/dehydratase family protein [Streptococcus
porcinus str. Jelinkova 176]
gi|332313717|gb|EGJ26702.1| NAD dependent epimerase/dehydratase family protein [Streptococcus
porcinus str. Jelinkova 176]
Length = 398
Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 20/124 (16%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++ L + Q + + S G +G H+ + Q +V G
Sbjct: 285 DDRGSFTE---------LVHTEDCGQVSINIS-KPGITKGQHWHSSKWEQFIVVS-GHGL 333
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE--MNTEVIYKVTDFY 133
I + RN T G V E+S + IY+ G+ H + L N + + +
Sbjct: 334 IQE------RNIVT-GEIVEFEVSGDKIEAIYMVPGWTHNIINLSETDNLVTVMTCNEIF 386
Query: 134 SVEH 137
EH
Sbjct: 387 DPEH 390
>gi|325982132|ref|YP_004294534.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosomonas sp. AL212]
gi|325531651|gb|ADZ26372.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Nitrosomonas sp. AL212]
Length = 170
Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G I H Q + I G I + D R +S T G +S I I
Sbjct: 66 RPGAISAWHMHEF---QIDTIFVINGAIKLVLYDDRADSATKGQLNVFHMSRLRPTLITI 122
Query: 109 PTGFAHGFMTL--EMNTEVIYKVTDF-YSVEHDSGVAWQ 144
P+G HG L ++ + Y + YS + +
Sbjct: 123 PSGIWHGLQNLDYSESSFINYFNNPYVYSGPDEWRLPAD 161
>gi|228962419|ref|ZP_04123810.1| NAD-dependent epimerase/dehydratase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228797260|gb|EEM44481.1| NAD-dependent epimerase/dehydratase [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 325
Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 19/123 (15%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RG+ L E+ + F Q S S IRG H+ + + + + G
Sbjct: 212 RDNRGF---------LAEIVKSNEFGQIFIS-STKENVIRGNHYH---HTKVEKFCVMRG 258
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM-TLEMNTEVIYKVTDFY 133
DI S S +S + IP G+ H V++ + +
Sbjct: 259 EAEINFRDIYSESS-----FSYIVSGERLEVVDIPPGYTHNIKNVGPDEMLVLFWANEIF 313
Query: 134 SVE 136
+ E
Sbjct: 314 NPE 316
>gi|169840911|ref|ZP_02874024.1| hypothetical protein cdivTM_27428 [candidate division TM7
single-cell isolate TM7a]
Length = 30
Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 130 TDFYSVEHDSGVAWQDKSIDITWPL 154
TD Y+ E+DSG+ W D++I+I W L
Sbjct: 6 TDLYAPEYDSGILWNDETINIDWKL 30
>gi|315926855|gb|EFV06227.1| dTDP-4-dehydrorhamnose 3,5-epimerase domain protein [Campylobacter
jejuni subsp. jejuni DFVF1099]
Length = 48
Score = 45.0 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 112 FAHGFMTLEMNTEVIYKVT---DFYSVEHDSGVAWQDKSIDITWP 153
+ YK+ ++ AW D+ I I WP
Sbjct: 1 MGNSHYVSSKEAVYYYKLAYEGEYMDAPDQFTYAWNDERIGIDWP 45
>gi|53712827|ref|YP_098819.1| hypothetical protein BF1535 [Bacteroides fragilis YCH46]
gi|52215692|dbj|BAD48285.1| hypothetical protein [Bacteroides fragilis YCH46]
Length = 133
Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 23/142 (16%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
NI+ V+++ +D RGWF + + E G+ + + G I+G H+
Sbjct: 3 NISKVQLIHRHLIKDERGWF---FKAITGCEEGIPLHTGEVYLTMGIQ-GQIKGGHY--- 55
Query: 62 PYAQAK-LVRCIAGRIFDIAVDI----RRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
+ +A I G DI RR + ++ + +++P AH F
Sbjct: 56 -HPEAVEWFTVIEGEAILRLEDIVTHERRE---------ILLNFEQAVSVFVPNNVAHDF 105
Query: 117 MTLEM-NTEVIYKVTDFYSVEH 137
+ N ++ Y
Sbjct: 106 KNVGDGNMIILAYTDKLYDPAD 127
>gi|330997514|ref|ZP_08321362.1| hypothetical protein HMPREF9442_02462 [Paraprevotella xylaniphila
YIT 11841]
gi|329570459|gb|EGG52186.1| hypothetical protein HMPREF9442_02462 [Paraprevotella xylaniphila
YIT 11841]
Length = 136
Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 23/148 (15%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I V+I+ R D RGWF + E G+ + + G +G H+
Sbjct: 5 QIEQVKIIPRRLISDERGWFL---KAITGTEEGIPQHTGEVYLTM-GKPGQAKGGHYH-- 58
Query: 62 PYAQAKLVRCIAG----RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
P A I G R+ D+ R++ +E+S + +++P AH +
Sbjct: 59 PKAVE-WFTIIEGNAILRLEDVVTHKRKD---------IEMSLEKAITVFVPNNVAHVVI 108
Query: 118 TLEM-NTEVIYKVTDFYSVEHDSGVAWQ 144
+ ++ Y + +A+
Sbjct: 109 NNSDRDFILLAYTDLLYDPKD--TIAYN 134
>gi|322711251|gb|EFZ02825.1| oxalate decarboxylase oxdC, putative [Metarhizium anisopliae ARSEF
23]
Length = 411
Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G IR LH+ R A+ GR+ AVD G + + E+ N G Y
Sbjct: 115 KKGAIRELHWHRV----AEWGFVYTGRVLVSAVDEN------GIYQAEEL--NYGDIWYF 162
Query: 109 PTGFAHGFMTLEMNTEVI 126
P G AH LE E +
Sbjct: 163 PKGVAHTVQGLEDENEFL 180
>gi|212704390|ref|ZP_03312518.1| hypothetical protein DESPIG_02445 [Desulfovibrio piger ATCC 29098]
gi|212672111|gb|EEB32594.1| hypothetical protein DESPIG_02445 [Desulfovibrio piger ATCC 29098]
Length = 156
Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEIS-ANNGLQIYIPTGFAHGFMTLEMNT 123
Q + G + + D R +SPT G + + ++ + IPTG +GF
Sbjct: 66 QTQYYTVPHGLLKLVLYDARPDSPTRGVLREVYLGRPDHYGLLRIPTGVWYGFTAANDEP 125
Query: 124 EVIYKVTD-FYSVEHDSGVAWQDKSIDITW 152
+I D + E + K I TW
Sbjct: 126 ALICNCADLPHDPEEGERLPADTKDIPYTW 155
>gi|169841083|ref|ZP_02874196.1| hypothetical protein cdivTM_28288 [candidate division TM7
single-cell isolate TM7a]
Length = 83
Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 133 YSVEHDSGVAWQDKSIDITWPLLD----TILPSVSE 164
Y+ E+DSG+ W D++I+I W + ++SE
Sbjct: 35 YAPEYDSGILWNDETINIDWKFEEFGINPDELTISE 70
>gi|291514991|emb|CBK64201.1| dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Alistipes
shahii WAL 8301]
Length = 144
Score = 44.3 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQ-IYIPTGFAHGFMTLEMNTEVI 126
+ G I + D R S TYG + + +S NN Q + +P G F +T ++
Sbjct: 63 VNGAIGFVLYDNRPGSSTYGEFEHIVLSRNNNYQRLTVPPGLWMAFYCASNDTAML 118
>gi|223984450|ref|ZP_03634584.1| hypothetical protein HOLDEFILI_01878 [Holdemania filiformis DSM
12042]
gi|223963574|gb|EEF67952.1| hypothetical protein HOLDEFILI_01878 [Holdemania filiformis DSM
12042]
Length = 404
Score = 44.3 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 24/126 (19%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D+RG F++ L V N S G +G H+ + Q +AG
Sbjct: 284 CDARGSFTELL-------HTLDCGQVSINIS---KPGITKGQHWHNSKWEQFI---VVAG 330
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN----TEVIYKVT 130
+I G V E+S +Y+ G+ H + L T +
Sbjct: 331 HGLIQERNIHT-----GELVEFEVSGEKIEAVYMIPGWTHNIINLSETENLVTVMT--CN 383
Query: 131 DFYSVE 136
+ ++ E
Sbjct: 384 EIFNPE 389
>gi|169614710|ref|XP_001800771.1| hypothetical protein SNOG_10502 [Phaeosphaeria nodorum SN15]
gi|111060776|gb|EAT81896.1| hypothetical protein SNOG_10502 [Phaeosphaeria nodorum SN15]
Length = 410
Score = 44.3 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 14/79 (17%)
Query: 49 DCGTIRGLHFQR-PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIY 107
G IR LH+ R + Q + GR+ AVD G E+ G Y
Sbjct: 109 KKGAIRELHWHRVAEWGQ-----VLFGRVLVSAVDEN------GRHQVTELG--FGDIWY 155
Query: 108 IPTGFAHGFMTLEMNTEVI 126
P G AH L+ E +
Sbjct: 156 FPKGQAHTVQGLDDENEYL 174
>gi|15678600|ref|NP_275715.1| polysaccharide biosynthesis protein [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2621649|gb|AAB85078.1| polysaccharide biosynthesis protein [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 89
Score = 44.3 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKV-TDF 132
G + D R +SPTY + + +YIP G HG + V+ + +
Sbjct: 2 GMVKLALYDYREDSPTYQVLNEIFMGEKCPCVVYIPPGIFHGTKNIGNKISVVIGMPSLL 61
Query: 133 YSVE--HDSGVAWQDKSI 148
Y E + V D I
Sbjct: 62 YDPENVDERRVNPLDNDI 79
>gi|282895525|ref|ZP_06303662.1| hypothetical protein CRD_00157 [Raphidiopsis brookii D9]
gi|281199558|gb|EFA74421.1| hypothetical protein CRD_00157 [Raphidiopsis brookii D9]
Length = 148
Score = 43.9 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 56 LHF-QRPPYAQAKLVR----CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNG--LQIYI 108
+H+ P+ + + G I + D R S +YG S +S + ++ I
Sbjct: 42 IHYGTIKPWKRHNQMTLNLVVPCGCIRFVLYDDRPESTSYGRVESFILSPEDQDYRRLTI 101
Query: 109 PTGFAHGFMTLEMN 122
P G F + N
Sbjct: 102 PPGIWMAFQGVSQN 115
>gi|303328292|ref|ZP_07358730.1| polysaccharide biosynthesis domain protein [Desulfovibrio sp.
3_1_syn3]
gi|302861622|gb|EFL84558.1| polysaccharide biosynthesis domain protein [Desulfovibrio sp.
3_1_syn3]
Length = 159
Score = 43.9 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEIS---ANNGLQIYIPTGFAHGFMTLEM 121
Q +L G + + D R S T G V E++ + + IPTG +GF +
Sbjct: 61 QTQLFAVPHGLLRIVLYDDRPGSSTQG--VLCELALGRPEHYGLLRIPTGVWYGFAAMGG 118
Query: 122 NTEVIYKVTD-FYSV-EHDSGVAWQDKSIDITW 152
+I D + E + D +I +W
Sbjct: 119 EAALICNCADIPHDPTEGERR-PADDPAIPYSW 150
>gi|116178848|ref|XP_001219273.1| hypothetical protein CHGG_00052 [Chaetomium globosum CBS 148.51]
gi|88184349|gb|EAQ91817.1| hypothetical protein CHGG_00052 [Chaetomium globosum CBS 148.51]
Length = 346
Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 18/117 (15%)
Query: 13 KFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHS---FSFDCGTIRGLHFQRPPYAQAKLV 69
+F DS+ ++ + L+E +QD+ + S G IR LH+ R A+
Sbjct: 77 RFSDSK---TRLFKGGWLREQVIQDLPQSHDISAAQQHLSKGAIRELHWHRV----AEWG 129
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
AG + AVD +G + + N G Y P G AH L E +
Sbjct: 130 FVYAGSVLISAVDE------FGKYQVETL--NFGDIWYFPKGVAHTVQGLGEENEFL 178
>gi|313683527|ref|YP_004061265.1| hypothetical protein Sulku_2405 [Sulfuricurvum kujiense DSM 16994]
gi|313156387|gb|ADR35065.1| hypothetical protein Sulku_2405 [Sulfuricurvum kujiense DSM 16994]
Length = 140
Score = 43.5 bits (102), Expect = 0.016, Method: Composition-based stats.
Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 5/106 (4%)
Query: 47 SFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQI 106
+ I+G + G I + D R +S T G + + + + ++
Sbjct: 40 TVRQNCIKGWKKHTK---MTLNLIVPVGSIEFVLFDDRADSSTKGKFFATVLGPSAYQRL 96
Query: 107 YIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITW 152
+P F+ LE ++ + + +I W
Sbjct: 97 SVPPNVWMAFLGLEEFNLLLNVADLEHDPAEALTLELD--AIAYEW 140
>gi|332529600|ref|ZP_08405556.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hylemonella gracilis ATCC
19624]
gi|332040950|gb|EGI77320.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hylemonella gracilis ATCC
19624]
Length = 70
Score = 43.1 bits (101), Expect = 0.019, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 42 DNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISAN 101
DNHS S G + LH+Q Q++LV +FD+AVDIR P + + +SA
Sbjct: 3 DNHSRSAR-GVLCDLHYQIGQP-QSELVCLARSSVFDVAVDIR--GPV--QVMMVTLSAK 56
Query: 102 NGLQI 106
+ ++
Sbjct: 57 DQQRL 61
>gi|78358735|ref|YP_390184.1| polysaccharide biosynthesis domain-containing protein
[Desulfovibrio desulfuricans subsp. desulfuricans str.
G20]
gi|78221140|gb|ABB40489.1| polysaccharide biosynthesis domain protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 173
Score = 42.7 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEIS-ANNGLQIYIPTGFAHGFMTLEMNT 123
+L G I + D R SPT G + + +N + IP +GF
Sbjct: 73 MTQLFAVPVGCIHVVLYDGREKSPTSGRLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTP 132
Query: 124 EVIYKVTDFYSVEHDSGVAWQD-KSIDITW 152
++ TD + +S A QD I +W
Sbjct: 133 ALVANCTDIPHRQGESERAPQDAPFIPFSW 162
>gi|260173834|ref|ZP_05760246.1| hypothetical protein BacD2_18332 [Bacteroides sp. D2]
gi|315922097|ref|ZP_07918337.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313695972|gb|EFS32807.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 133
Score = 42.7 bits (100), Expect = 0.031, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 13/132 (9%)
Query: 7 RILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+I+ R +D RGWF + + E + + + G +G H+ P A
Sbjct: 8 KIIPRRLIKDERGWF---FKAITGTEENIPSHTGEVYLTM-GTKGQAKGGHYH--PRAVE 61
Query: 67 KLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE-MNTEV 125
I G+ DI + + + +S + +++P AH F + N V
Sbjct: 62 -WFTVIEGKAKLKLEDIETHEK-----MEIMMSLEEAILVFVPNNVAHIFENVSNDNFIV 115
Query: 126 IYKVTDFYSVEH 137
+ Y+
Sbjct: 116 LAYTDLLYNPSD 127
>gi|46578491|ref|YP_009299.1| polysaccharide biosynthesis domain-containing protein
[Desulfovibrio vulgaris str. Hildenborough]
gi|120603925|ref|YP_968325.1| polysaccharide biosynthesis domain-containing protein
[Desulfovibrio vulgaris DP4]
gi|46447902|gb|AAS94558.1| polysaccharide biosynthesis domain protein [Desulfovibrio vulgaris
str. Hildenborough]
gi|120564154|gb|ABM29898.1| polysaccharide biosynthesis domain protein [Desulfovibrio vulgaris
DP4]
gi|311232419|gb|ADP85273.1| polysaccharide biosynthesis domain-containing protein
[Desulfovibrio vulgaris RCH1]
Length = 147
Score = 42.3 bits (99), Expect = 0.034, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEIS-ANNGLQIYIPTGFAHGFMTLEMNT 123
Q + GR+ + D R SPT G + + + IP +GF +
Sbjct: 58 QTQHFAVPVGRLKVVVYDDREGSPTRGRVEEHILGRPDAYRLLRIPPLVWYGFTAVGDVP 117
Query: 124 EVIYKVTD-FYSVE 136
+I D + +
Sbjct: 118 ALICNCADIPHDPQ 131
>gi|291326741|ref|ZP_06125651.2| conserved hypothetical protein [Providencia rettgeri DSM 1131]
gi|291313084|gb|EFE53537.1| conserved hypothetical protein [Providencia rettgeri DSM 1131]
Length = 434
Score = 42.3 bits (99), Expect = 0.039, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 80 AVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+D R NSPT+ + I+ ++ + IP G AH F LE
Sbjct: 85 FIDCRANSPTFRVSLEFNITPSSAKTLVIPPGIAHTFHNLEN 126
>gi|229916915|ref|YP_002885561.1| NAD-dependent epimerase/dehydratase [Exiguobacterium sp. AT1b]
gi|229468344|gb|ACQ70116.1| NAD-dependent epimerase/dehydratase [Exiguobacterium sp. AT1b]
Length = 370
Score = 41.9 bits (98), Expect = 0.042, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 20/102 (19%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSF-DCGTIRGLHFQRPPYAQAKLVRCI 72
+D RG F++ + + ++ S + G +G H+ + Q +V
Sbjct: 249 HQDVRGSFTELFKTPDRGQV-----------SVNVAKPGITKGEHWHESKHEQFIVVS-G 296
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
G I +D +S +S I IP G+ H
Sbjct: 297 EGVIRLRLMDQD-------QIISFHVSEEQLEVIEIPPGYVH 331
>gi|208435789|pdb|3EJK|A Chain A, Crystal Structure Of Dtdp Sugar Isomerase (Yp_390184.1)
From Desulfovibrio Desulfuricans G20 At 1.95 A
Resolution
Length = 174
Score = 41.9 bits (98), Expect = 0.043, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEIS-ANNGLQIYIPTGFAHGFMTLEMNTEVIYKV 129
G I + D R SPT G + + +N + IP +GF ++
Sbjct: 80 VPVGCIHVVLYDGREKSPTSGRLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTPALVANC 139
Query: 130 TDFYSVEHDSGVAWQD-KSIDITW 152
TD + +S A QD I +W
Sbjct: 140 TDIPHRQGESERAPQDAPFIPFSW 163
>gi|29345792|ref|NP_809295.1| capsular polysaccharide biosynthesis protein Cps4K [Bacteroides
thetaiotaomicron VPI-5482]
gi|29337685|gb|AAO75489.1| capsular polysaccharide biosynthesis protein Cps4K [Bacteroides
thetaiotaomicron VPI-5482]
Length = 401
Score = 41.9 bits (98), Expect = 0.043, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 22/124 (17%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++ L Q + + S G +G H+ + Q +V G
Sbjct: 286 DQRGSFTE---------LVHTLNCGQVSINIS-KPGITKGEHWHNTKWEQFIVVS-GHGL 334
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN---TEVIYKVTDF 132
I +R+ ++ E+S + + + G+AH + L V+Y +
Sbjct: 335 IQ-----LRKEGTD--EVLNYEVSGDKIQSVIMLPGYAHNIINLSDTEDLVTVMY-CNEI 386
Query: 133 YSVE 136
++ +
Sbjct: 387 FNPD 390
>gi|227500447|ref|ZP_03930509.1| capsular polysaccharide biosynthesis protein Cap5F [Anaerococcus
tetradius ATCC 35098]
gi|227217510|gb|EEI82829.1| capsular polysaccharide biosynthesis protein Cap5F [Anaerococcus
tetradius ATCC 35098]
Length = 398
Score = 41.9 bits (98), Expect = 0.045, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 18/111 (16%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG F++ L + Q + + S G +G H+ + Q +V G
Sbjct: 285 DNRGSFTE---------LVHTEDCGQVSINIS-KPGITKGQHWHNSKWEQFIVVH-GHGL 333
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
I + ++ G +V E+S + IY+ G+ H + L +++
Sbjct: 334 IQERCINT-------GEFVEFEVSGDKIEAIYMIPGWTHNIINLSETEDLV 377
>gi|302684799|ref|XP_003032080.1| hypothetical protein SCHCODRAFT_108794 [Schizophyllum commune H4-8]
gi|300105773|gb|EFI97177.1| hypothetical protein SCHCODRAFT_108794 [Schizophyllum commune H4-8]
Length = 540
Score = 41.9 bits (98), Expect = 0.053, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPT 110
G IR LH+ ++ A+ V I G AVD + T+G +AN G Y P
Sbjct: 240 GAIRELHW----HSIAEWVYVINGTTQISAVDT-QGRNTFG-------TANTGDLWYFPP 287
Query: 111 GFAHGFMTLEM 121
G H
Sbjct: 288 GIGHHLQATGD 298
>gi|217978335|ref|YP_002362482.1| bicupin, oxalate decarboxylase family [Methylocella silvestris BL2]
gi|217503711|gb|ACK51120.1| bicupin, oxalate decarboxylase family [Methylocella silvestris BL2]
Length = 384
Score = 41.6 bits (97), Expect = 0.057, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 14/77 (18%)
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISA-NNGLQIYIP 109
G +R LH+ + +A+ + G+ VD RN + I G P
Sbjct: 90 GVVRELHW----HKEAEWGYVLQGQCRITVVDPDRN---------VYIDDLKAGDIWLFP 136
Query: 110 TGFAHGFMTLEMNTEVI 126
GF H L E +
Sbjct: 137 AGFPHSIQGLAEGCEFL 153
>gi|226359782|ref|YP_002777560.1| hypothetical protein ROP_03680 [Rhodococcus opacus B4]
gi|226238267|dbj|BAH48615.1| hypothetical protein [Rhodococcus opacus B4]
Length = 1282
Score = 41.6 bits (97), Expect = 0.065, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 59 QRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCW-VSLEISANNGLQIYIPTGFAHGFM 117
Q +Q +L R G +DI S TYG ++ ++ + P G F+
Sbjct: 1151 QFITDSQGRLWRVTGGYGLVSVIDIDPASATYGSTLDTVRLTGDAQDLALSPDG-GRAFV 1209
Query: 118 TLEM 121
T
Sbjct: 1210 TAGD 1213
>gi|323968172|gb|EGB63581.1| WxcM protein [Escherichia coli M863]
Length = 137
Score = 41.2 bits (96), Expect = 0.077, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 20/145 (13%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M+I +++ +K D RG L ++ + + + G RG H +
Sbjct: 2 MDI---KLISLQKHGDERGALI-----ALEEQRNIPFEVKRIYYILETLKGVRRGFHAHK 53
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
A + G +D + + +E++ + + + I H
Sbjct: 54 VTRQLAI---VVKGACK-FHLDNGKETKQ------VELN-DPTIALLIEPYIWHEMYDFS 102
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQD 145
+ ++ DFY E D + D
Sbjct: 103 DDCVLLVIADDFY-KESDYIRNYDD 126
>gi|293370201|ref|ZP_06616761.1| NAD-binding protein [Bacteroides ovatus SD CMC 3f]
gi|292634698|gb|EFF53227.1| NAD-binding protein [Bacteroides ovatus SD CMC 3f]
Length = 401
Score = 41.2 bits (96), Expect = 0.077, Method: Composition-based stats.
Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 22/123 (17%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++ L Q + + S G +G H+ + Q +V G
Sbjct: 286 DQRGSFTE---------LVHTLNCGQVSINIS-KPGVTKGEHWHNTKWEQFIVVS-GHGL 334
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN---TEVIYKVTDF 132
I +R+ ++ E+S + + G+ H + L V+Y +
Sbjct: 335 IQ-----LRKEGT--DEVLNYEVSGEKIQSVIMLPGYTHNIINLSDTEDLVTVMY-CNEV 386
Query: 133 YSV 135
++
Sbjct: 387 FNP 389
>gi|67526211|ref|XP_661167.1| hypothetical protein AN3563.2 [Aspergillus nidulans FGSC A4]
gi|40740581|gb|EAA59771.1| hypothetical protein AN3563.2 [Aspergillus nidulans FGSC A4]
gi|259481914|tpe|CBF75880.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 407
Score = 41.2 bits (96), Expect = 0.079, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G IR LH+ R A+ G + AVD G W + ++ N G Y
Sbjct: 110 TKGAIRELHWHRV----AEWGFVYEGSLLLSAVDEN------GRWTTEKL--NTGDIWYF 157
Query: 109 PTGFAHGFMTLEMNTEVI 126
P G AH L+ E +
Sbjct: 158 PKGVAHNVQGLDDENEYL 175
>gi|158422972|ref|YP_001524264.1| oxalate decarboxylase [Azorhizobium caulinodans ORS 571]
gi|158329861|dbj|BAF87346.1| oxalate decarboxylase [Azorhizobium caulinodans ORS 571]
Length = 443
Score = 41.2 bits (96), Expect = 0.082, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPT 110
G +R LH+ + +A+ + GR+ VD +R + ++ G P
Sbjct: 152 GVVRELHW----HKEAEWAYVLNGRVRFYLVDDQR------QTLVEDLGP--GDLWLAPA 199
Query: 111 GFAHGFMTLEMNTEVI 126
GF H LE TE +
Sbjct: 200 GFPHAIQGLEEGTEFV 215
>gi|225025751|ref|ZP_03714943.1| hypothetical protein EIKCOROL_02655 [Eikenella corrodens ATCC
23834]
gi|224941532|gb|EEG22741.1| hypothetical protein EIKCOROL_02655 [Eikenella corrodens ATCC
23834]
Length = 74
Score = 41.2 bits (96), Expect = 0.083, Method: Composition-based stats.
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 10 KTRKFEDSRGWFSQTYSSK 28
+ + D RG+F +T+
Sbjct: 56 QPQVHGDERGFFMETFRDN 74
>gi|306814838|ref|ZP_07449000.1| WxcM domain protein [Escherichia coli NC101]
gi|305852232|gb|EFM52684.1| WxcM domain protein [Escherichia coli NC101]
Length = 136
Score = 41.2 bits (96), Expect = 0.088, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 20/145 (13%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M+I +++ +K D RG L ++ + + + G RG H +
Sbjct: 1 MDI---KLISLQKHGDERGALI-----ALEEQRNIPFEVKRIYYILETLKGVRRGFHAHK 52
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
A + G +D + + +E++ + + + I H
Sbjct: 53 VTRQLAI---VVKGACK-FHLDNGKETKQ------VELN-DPTIALLIEPYIWHEMYDFS 101
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQD 145
+ ++ DFY E D + D
Sbjct: 102 DDCVLLVIADDFY-KESDYIRNYDD 125
>gi|253568587|ref|ZP_04845998.1| capsular polysaccharide biosynthesis protein Cps4K [Bacteroides sp.
1_1_6]
gi|251842660|gb|EES70740.1| capsular polysaccharide biosynthesis protein Cps4K [Bacteroides sp.
1_1_6]
Length = 401
Score = 40.8 bits (95), Expect = 0.096, Method: Composition-based stats.
Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 22/124 (17%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++ L Q + + S G +G H+ + Q +V G
Sbjct: 286 DQRGSFTE---------LVHTLNCGQVSINIS-KPGVTKGEHWHNTKWEQFIVVS-GHGL 334
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN---TEVIYKVTDF 132
I +R+ ++ E+S + + + G+ H + L V+Y +
Sbjct: 335 IQ-----LRKEGTD--EVLNYEVSGDKIQSVIMLPGYTHNIINLSDTEDLVTVMY-CNEI 386
Query: 133 YSVE 136
++ +
Sbjct: 387 FNPD 390
>gi|45657998|ref|YP_002084.1| dTDP-4-dehydrorhamnose epimerase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45601239|gb|AAS70721.1| dTDP-4-dehydrorhamnose epimerase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 155
Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEIS-ANNGLQIYIPTGFAHGFMTLE-MN 122
Q + +GRI I D R NS T G + + N ++ IP +GF +
Sbjct: 65 QTQNFTVPSGRIKLILFDPRENSKTKGKIQEIILGRPENYQRVKIPPQIWYGFTCISKEK 124
Query: 123 TEVIYKVTDFYSV-EHDS 139
+ + E +
Sbjct: 125 ALIANFTDIPHDPSEAER 142
>gi|289450969|gb|ADC93886.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Leptospira interrogans
serovar Canicola]
Length = 150
Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEIS-ANNGLQIYIPTGFAHGFMTLE-MN 122
Q + +GRI I D R NS T G + + N ++ IP +GF +
Sbjct: 60 QTQNFTVPSGRIKLILFDPRENSKTKGKIQEIILGRPENYQRVKIPPQIWYGFTCISKEK 119
Query: 123 TEVIYKVTDFYSV-EHDS 139
+ + E +
Sbjct: 120 ALIANFTDIPHDPSEAER 137
>gi|91773566|ref|YP_566258.1| dTDP-4-dehydrorhamnose epimerase [Methanococcoides burtonii DSM
6242]
gi|91712581|gb|ABE52508.1| dTDP-4-dehydrorhamnose 3,5-epimerase related protein
[Methanococcoides burtonii DSM 6242]
Length = 145
Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 26/64 (40%)
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ + G I + D R S T G + +++S N ++ IP GF + +
Sbjct: 54 HEMTLNIVVPQGEIMFVLYDDRLESNTRGQIMEIKLSTENYQRLTIPPMVWMGFKGMGKD 113
Query: 123 TEVI 126
++
Sbjct: 114 ANIL 117
>gi|294827920|ref|NP_711814.2| dTDP-4-dehydrorhamnose epimerase [Leptospira interrogans serovar
Lai str. 56601]
gi|293385765|gb|AAN48832.2| dTDP-4-dehydrorhamnose epimerase [Leptospira interrogans serovar
Lai str. 56601]
Length = 150
Score = 40.4 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEIS-ANNGLQIYIPTGFAHGFMTLE-MN 122
Q + +GRI I D R NS T G + + N ++ IP +GF +
Sbjct: 60 QTQNFTVPSGRIKLILFDPRENSKTKGKIQEIILGRPENYQRVKIPPQIWYGFTCISKEK 119
Query: 123 TEVIYKVTDFYSV-EHDS 139
+ + E +
Sbjct: 120 ALIANFTDIPHDPSEAER 137
>gi|322412001|gb|EFY02909.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus dysgalactiae
subsp. dysgalactiae ATCC 27957]
Length = 55
Score = 40.4 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF 39
I + D+RGWF + + + L F
Sbjct: 17 EIPGLLEFDIPVRGDNRGWFKENFQKEKNAANWLSRTF 54
>gi|153808779|ref|ZP_01961447.1| hypothetical protein BACCAC_03079 [Bacteroides caccae ATCC 43185]
gi|149128605|gb|EDM19823.1| hypothetical protein BACCAC_03079 [Bacteroides caccae ATCC 43185]
Length = 134
Score = 40.4 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 23/142 (16%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRP 61
I+ V +++ R D RGWF + E G+ + + G +G H+
Sbjct: 3 QIDKVHVIQRRLIADDRGWFL---KAITGTEEGIPLHTGEVYLTM-GKPGQAKGGHY--- 55
Query: 62 PYAQAK-LVRCIAGRIFDIAVDI----RRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116
+ +A I G D+ R++ +E+S + ++IP AH
Sbjct: 56 -HPEAVEWFTIIGGSAILKLEDMETHERKD---------IEMSLEKAITVFIPNNVAHIV 105
Query: 117 MTLEM-NTEVIYKVTDFYSVEH 137
+ + ++ Y+ +
Sbjct: 106 VNNSDKDFILLAYTDKLYNPKD 127
>gi|254456251|ref|ZP_05069680.1| putative WxcM C-terminal domain superfamily protein [Candidatus
Pelagibacter sp. HTCC7211]
gi|207083253|gb|EDZ60679.1| putative WxcM C-terminal domain superfamily protein [Candidatus
Pelagibacter sp. HTCC7211]
Length = 150
Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 16/131 (12%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKL-LKELGLQDVFVQDNHSFSFDCGTIRGLHFQ 59
M + I+K D RG Y ++ + ++ F Q + + IR H
Sbjct: 1 MKSKGIEIIKVNTAYDDRGDIV--YCNEFNFIKKKIK-RFYQI---TNNNINFIRAWHGH 54
Query: 60 RPPYAQAKLVRCIAGRIFDIAVDIRRN-SPTYGCWVSL---EISANNGLQIYIPTGFAHG 115
+ + K + G AV I SP+ +S+ I+AN+ +YIP G+AHG
Sbjct: 55 KK---EDKFLLVQKGVFKICAVKIDNWKSPS--KTLSVKEFVINANSPKILYIPGGYAHG 109
Query: 116 FMTLEMNTEVI 126
L+ +++++
Sbjct: 110 TQNLKADSKLM 120
>gi|298387404|ref|ZP_06996957.1| capsular polysaccharide biosynthesis protein Cps4K [Bacteroides sp.
1_1_14]
gi|298260073|gb|EFI02944.1| capsular polysaccharide biosynthesis protein Cps4K [Bacteroides sp.
1_1_14]
Length = 401
Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats.
Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 22/124 (17%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++ L Q + + S G +G H+ + Q +V G
Sbjct: 286 DQRGSFTE---------LVHTLNCGQVSINIS-KPGVTKGEHWHNTKWEQFIVVS-GHGL 334
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN---TEVIYKVTDF 132
I +R+ ++ E+S + + + G+ H + L V+Y +
Sbjct: 335 IQ-----LRKEGTD--EVLNYEVSGDKIQSVIMLPGYTHNIINLSDTEDLITVMY-CNEI 386
Query: 133 YSVE 136
++ +
Sbjct: 387 FNPD 390
>gi|227873717|ref|ZP_03991948.1| possible capsular polysaccharide biosynthesis protein Cap5F
[Oribacterium sinus F0268]
gi|227840438|gb|EEJ50837.1| possible capsular polysaccharide biosynthesis protein Cap5F
[Oribacterium sinus F0268]
Length = 193
Score = 39.6 bits (92), Expect = 0.21, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 18/111 (16%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG F++ +K V N S G +G H+ + Q +V GR
Sbjct: 80 DNRGSFTELLHTK-------NHGQVSVNIS---KPGITKGQHWHNSKWEQFIVVS-GHGR 128
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
I + ++ G V ++S + +Y+ G+ H + L +++
Sbjct: 129 IEERNINT-------GEKVVFDVSGDKIEAVYMIPGWTHNIINLSETEDLV 172
>gi|86747326|ref|YP_483822.1| oxalate decarboxylase [Rhodopseudomonas palustris HaA2]
gi|86570354|gb|ABD04911.1| Oxalate decarboxylase [Rhodopseudomonas palustris HaA2]
Length = 378
Score = 39.6 bits (92), Expect = 0.21, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 14/77 (18%)
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISA-NNGLQIYIP 109
G +R LH+ + +A+ + GR VD R + + G P
Sbjct: 88 GVVRELHW----HKEAEWGYVLDGRCRVTVVDPDR---------GVYVDDLQAGDIWLFP 134
Query: 110 TGFAHGFMTLEMNTEVI 126
+G H LE E +
Sbjct: 135 SGIPHSIQALEEGCEFL 151
>gi|153854866|ref|ZP_01996089.1| hypothetical protein DORLON_02095 [Dorea longicatena DSM 13814]
gi|149752568|gb|EDM62499.1| hypothetical protein DORLON_02095 [Dorea longicatena DSM 13814]
Length = 204
Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 24/125 (19%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++ L + Q + + S G +G H+ + +V G
Sbjct: 91 DDRGSFTE---------LVHTEDCGQVSINIS-KPGITKGQHWHNSKWELFIVV-AGHGL 139
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN----TEVIYKVTD 131
I + ++ G V E+S I++ G+ H + L T + +
Sbjct: 140 IQERNINT-------GKMVEFEVSGGKIEAIHMIPGWTHNIINLSDTENLVTVMT--CNE 190
Query: 132 FYSVE 136
++ E
Sbjct: 191 VFNPE 195
>gi|256423735|ref|YP_003124388.1| hypothetical protein Cpin_4752 [Chitinophaga pinensis DSM 2588]
gi|256038643|gb|ACU62187.1| hypothetical protein Cpin_4752 [Chitinophaga pinensis DSM 2588]
Length = 152
Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 20/124 (16%)
Query: 9 LKTRKFEDSRGW--FSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
+K +F D RG F + ++ F Q H D IR + +
Sbjct: 8 IKGNQFSDHRGSLQFVNDF---TFPDV---QRFYQITH---PDAAVIRAWQGHKI---EE 55
Query: 67 KLVRCIAGRIFDIAVDIR----RNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
K + GR V++ +S + + ++IP G+A+G LE
Sbjct: 56 KFFYVVKGRFVIAWVEVDDWEQPSSDLPAEH--VILEEGTPAVLHIPAGYANGIKALEPG 113
Query: 123 TEVI 126
+ ++
Sbjct: 114 SVLM 117
>gi|24527250|gb|AAK60451.1| unknown [Escherichia coli]
Length = 134
Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
MNIN +++ ++ D RG +K + + + ++ + +RG H R
Sbjct: 1 MNIN---LIELQQHGDERGALVSLECNK-----NIPFDIRRVYYIYNTNKNVVRGYHAHR 52
Query: 61 PPYAQAKLV 69
A V
Sbjct: 53 KLKQMAICV 61
>gi|295102852|emb|CBL00397.1| Nucleoside-diphosphate-sugar epimerases [Faecalibacterium
prausnitzii L2-6]
Length = 398
Score = 39.2 bits (91), Expect = 0.29, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 26/135 (19%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG F++ L Q + + S G +G H+ + +V G
Sbjct: 285 DNRGSFTE---------LVHTADCGQVSINIS-RPGITKGQHWHNSKWELFIVV-AGHGL 333
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN----TEVIYKVTD 131
I + ++ G V E+S + +++ G+ H + L T + +
Sbjct: 334 IQERNINT-------GETVEFEVSGDKIEAVHMIPGWTHNIINLSETENLVTVMT--CNE 384
Query: 132 FYSVEHDSGVAWQDK 146
++ H + D
Sbjct: 385 IFNPSHPDT--FFDP 397
>gi|297531306|ref|YP_003672581.1| hypothetical protein GC56T3_3072 [Geobacillus sp. C56-T3]
gi|297254558|gb|ADI28004.1| hypothetical protein GC56T3_3072 [Geobacillus sp. C56-T3]
Length = 215
Score = 39.2 bits (91), Expect = 0.29, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
+I VD R+ SPT V LE + ++YI G AH F LE
Sbjct: 76 KITGYFVDCRKGSPTLHKQVVLEFYPDPSKKLYIDRGIAHTFDGLEN 122
>gi|227551953|ref|ZP_03982002.1| capsular polysaccharide biosynthesis protein Cap5F [Enterococcus
faecium TX1330]
gi|257895454|ref|ZP_05675107.1| NAD-dependent epimerase/dehydratase [Enterococcus faecium Com12]
gi|293378321|ref|ZP_06624490.1| NAD-binding protein [Enterococcus faecium PC4.1]
gi|227178858|gb|EEI59830.1| capsular polysaccharide biosynthesis protein Cap5F [Enterococcus
faecium TX1330]
gi|257832019|gb|EEV58440.1| NAD-dependent epimerase/dehydratase [Enterococcus faecium Com12]
gi|292643185|gb|EFF61326.1| NAD-binding protein [Enterococcus faecium PC4.1]
Length = 369
Score = 39.2 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 21/124 (16%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++ +K + V N S G +G H+ + +V G
Sbjct: 257 DDRGSFTEFLRTKDRGQ-------VSVNIS---KPGITKGNHWHHTKNEKFLVVS-GEGV 305
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL--EMNTEVIYKVTDFY 133
I VD + +S + IP G+ H L V++ V + +
Sbjct: 306 IRFRKVDSNEIIEYF-------VSGEKLEVVDIPVGYTHNIENLGSSDMVTVMW-VNEPF 357
Query: 134 SVEH 137
EH
Sbjct: 358 DPEH 361
>gi|189092404|gb|ACD75804.1| putative dTDP-6-deoxy-3,4-keto-hexulose isomerase [Escherichia
coli]
gi|288816212|gb|ADC54935.1| FdtA [Escherichia coli]
gi|315285655|gb|EFU45097.1| WxcM-like protein [Escherichia coli MS 110-3]
gi|323956208|gb|EGB51959.1| WxcM protein [Escherichia coli H263]
Length = 137
Score = 39.2 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 20/145 (13%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M+I +++ +K D RG L ++ + + + G RG H +
Sbjct: 2 MDI---KLISLQKHGDERGALI-----ALEEQRNIPFEVKRIYYILETLNGVRRGFHAHK 53
Query: 61 PPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
A + G +D + + +E++ + + + I H
Sbjct: 54 VTRQLAI---VVKGACK-FHLDNGKETKQ------VELN-DPTIALLIEPYIWHEMYDFS 102
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQD 145
+ ++ DFY E D + D
Sbjct: 103 DDCVLLVIADDFY-KESDYIRNYDD 126
>gi|257898060|ref|ZP_05677713.1| NAD-dependent epimerase/dehydratase [Enterococcus faecium Com15]
gi|257835972|gb|EEV61046.1| NAD-dependent epimerase/dehydratase [Enterococcus faecium Com15]
Length = 369
Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats.
Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 21/124 (16%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++ +K + V N S G +G H+ + +V G
Sbjct: 257 DDRGSFTEFLRTKDRGQ-------VSVNIS---KPGITKGNHWHHTKNEKFLVVS-GEGV 305
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL--EMNTEVIYKVTDFY 133
I VD + +S + IP G+ H L V++ V + +
Sbjct: 306 IRFRKVDSNEIIEYF-------VSGEKLEVVDIPVGYTHNIENLGSSDMVTVMW-VNEPF 357
Query: 134 SVEH 137
EH
Sbjct: 358 DPEH 361
>gi|160945674|ref|ZP_02092900.1| hypothetical protein FAEPRAM212_03205 [Faecalibacterium prausnitzii
M21/2]
gi|158443405|gb|EDP20410.1| hypothetical protein FAEPRAM212_03205 [Faecalibacterium prausnitzii
M21/2]
Length = 398
Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 24/126 (19%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG F++ L Q + + S G +G H+ + +V G
Sbjct: 285 DNRGSFTE---------LVHTADCGQVSINIS-RPGITKGQHWHNSKWELFIVV-AGHGL 333
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN----TEVIYKVTD 131
I + ++ G V E+S + +++ G+ H + L T + +
Sbjct: 334 IQERNINT-------GETVEFEVSGDKIEAVHMIPGWTHNIINLSETENLVTVMT--CNE 384
Query: 132 FYSVEH 137
++ H
Sbjct: 385 IFNPNH 390
>gi|255505853|ref|ZP_05348498.3| capsular polysaccharide biosynthesis protein Cps4K [Bryantella
formatexigens DSM 14469]
gi|255265525|gb|EET58730.1| capsular polysaccharide biosynthesis protein Cps4K [Bryantella
formatexigens DSM 14469]
Length = 403
Score = 38.9 bits (90), Expect = 0.37, Method: Composition-based stats.
Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 24/126 (19%)
Query: 15 EDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAG 74
D RG F++ L Q + + S G +G H+ + +AG
Sbjct: 289 CDDRGSFTE---------LVHTADCGQVSINIS-RPGITKGQHWHNSKWELFI---VVAG 335
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN----TEVIYKVT 130
+I V E+S + +++ G+ H + L T +
Sbjct: 336 HGLIQERNIHTGEK-----VEFEVSGDKIEAVHMIPGWTHNIINLSDTENLVTVMT--CN 388
Query: 131 DFYSVE 136
+ ++ +
Sbjct: 389 EIFNPD 394
>gi|189195256|ref|XP_001933966.1| oxalate decarboxylase oxdD [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187979845|gb|EDU46471.1| oxalate decarboxylase oxdD [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 458
Score = 38.9 bits (90), Expect = 0.37, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 19/109 (17%)
Query: 19 GWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFD 78
GW +T ++ELG N D G IR LH+ + +A+ + G++
Sbjct: 119 GWTRET----TIRELGASKELAGVN--MRLDEGVIRELHW----HKEAEWAYVLEGKVRI 168
Query: 79 IAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN-TEVI 126
A+D S G Y P+G H L N TE +
Sbjct: 169 TALDTEGGS--------FVDDLEKGDLWYFPSGHPHSLQGLSPNGTEFL 209
>gi|293568639|ref|ZP_06679954.1| NAD-dependent epimerase/dehydratase [Enterococcus faecium E1071]
gi|291588599|gb|EFF20432.1| NAD-dependent epimerase/dehydratase [Enterococcus faecium E1071]
Length = 369
Score = 38.9 bits (90), Expect = 0.39, Method: Composition-based stats.
Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 21/124 (16%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG F++ +K + V N S G +G H+ + +V G
Sbjct: 257 DNRGSFTEFLRTKDRGQ-------VSVNIS---KPGITKGNHWHHTKNEKFLVVS-GEGV 305
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL--EMNTEVIYKVTDFY 133
I VD + +S + IP G+ H L V++ V + +
Sbjct: 306 IRFRKVDSNEIIEYF-------VSGEKLEVVDIPVGYTHNIENLGSSDMVTVMW-VNEPF 357
Query: 134 SVEH 137
EH
Sbjct: 358 DPEH 361
>gi|212691405|ref|ZP_03299533.1| hypothetical protein BACDOR_00897 [Bacteroides dorei DSM 17855]
gi|212666015|gb|EEB26587.1| hypothetical protein BACDOR_00897 [Bacteroides dorei DSM 17855]
Length = 147
Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQ-IYIPTGFAHGFM 117
G + + D R SPT G + + +S + Q + + G F
Sbjct: 66 VPVGAVKFVIYDDREGSPTRGQFEEITLSPESCYQRLTVAPGLWMAFY 113
>gi|315659672|ref|ZP_07912533.1| capsular polysaccharide biosynthesis protein Cap5F [Staphylococcus
lugdunensis M23590]
gi|315495405|gb|EFU83739.1| capsular polysaccharide biosynthesis protein Cap5F [Staphylococcus
lugdunensis M23590]
Length = 369
Score = 38.5 bits (89), Expect = 0.48, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 19/121 (15%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++ + +K + V N S G ++G H+ + +V G
Sbjct: 257 DHRGSFTEIFKTKDRGQ-------VSVNIS---KPGIVKGNHWHHTKNEKFLVVS-GQGV 305
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK-VTDFYS 134
I VD + +S + + IP G+ H L V V + +
Sbjct: 306 IRFRKVDDDD-------VIEYYVSGDKLEVVDIPVGYTHNIENLGDTDMVTIMWVNEIFD 358
Query: 135 V 135
Sbjct: 359 P 359
>gi|302684893|ref|XP_003032127.1| hypothetical protein SCHCODRAFT_55172 [Schizophyllum commune H4-8]
gi|300105820|gb|EFI97224.1| hypothetical protein SCHCODRAFT_55172 [Schizophyllum commune H4-8]
Length = 378
Score = 38.5 bits (89), Expect = 0.51, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 13/77 (16%)
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPT 110
G IR LH+ A+ V I+G AVD + T+ +AN G Y P
Sbjct: 84 GAIRELHWHTI----AEWVYLISGTTQVSAVDQ-QGRSTFA-------TANTGDLWYFPP 131
Query: 111 GFAHGFMTLEM-NTEVI 126
G H E +
Sbjct: 132 GVGHHLQATGDAPAEFL 148
>gi|169597909|ref|XP_001792378.1| hypothetical protein SNOG_01747 [Phaeosphaeria nodorum SN15]
gi|160707617|gb|EAT91396.2| hypothetical protein SNOG_01747 [Phaeosphaeria nodorum SN15]
Length = 457
Score = 38.5 bits (89), Expect = 0.53, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 19/109 (17%)
Query: 19 GWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFD 78
GW +T ++ELG N D G IR LH+ + +A+ + G++
Sbjct: 117 GWTRET----TIRELGTSKELAGVN--MRLDEGVIRELHW----HKEAEWAYVLEGKVRI 166
Query: 79 IAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN-TEVI 126
A+D+ S G Y P+G H L N TE +
Sbjct: 167 TALDVEGGS--------FVDDLEKGDLWYFPSGHPHSLQGLSPNGTEFL 207
>gi|289549699|ref|YP_003470603.1| capsular polysaccharide synthesis enzyme CapF [Staphylococcus
lugdunensis HKU09-01]
gi|289179231|gb|ADC86476.1| capsular polysaccharide synthesis enzyme CapF [Staphylococcus
lugdunensis HKU09-01]
Length = 369
Score = 38.5 bits (89), Expect = 0.55, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 19/121 (15%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++ + +K + V N S G ++G H+ + +V G
Sbjct: 257 DHRGSFTEVFKTKDRGQ-------VSVNIS---KPGIVKGNHWHHTKNEKFLVVS-GQGV 305
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK-VTDFYS 134
I VD + +S + + IP G+ H L V V + +
Sbjct: 306 IRFRKVDDDD-------VIEYYVSGDKLEVVDIPVGYTHNIENLGDTDMVTIMWVNEIFD 358
Query: 135 V 135
Sbjct: 359 P 359
>gi|160945417|ref|ZP_02092643.1| hypothetical protein FAEPRAM212_02939 [Faecalibacterium prausnitzii
M21/2]
gi|158443148|gb|EDP20153.1| hypothetical protein FAEPRAM212_02939 [Faecalibacterium prausnitzii
M21/2]
Length = 398
Score = 38.5 bits (89), Expect = 0.59, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 24/126 (19%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG F++ L Q + + S G +G H+ + +V G
Sbjct: 285 DNRGSFTE---------LVHTADCGQVSINIS-KPGITKGQHWHNSKWELFIVV-AGHGL 333
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN----TEVIYKVTD 131
I + ++ G V E S + +++ G+ H + L T + +
Sbjct: 334 IQERNINT-------GETVEFEASGDKIEAVHMIPGWTHNIINLSETENLVTVMT--CNE 384
Query: 132 FYSVEH 137
++ +H
Sbjct: 385 IFNPKH 390
>gi|330933086|ref|XP_003304040.1| hypothetical protein PTT_16458 [Pyrenophora teres f. teres 0-1]
gi|311319620|gb|EFQ87870.1| hypothetical protein PTT_16458 [Pyrenophora teres f. teres 0-1]
Length = 443
Score = 38.1 bits (88), Expect = 0.63, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 19/109 (17%)
Query: 19 GWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFD 78
GW +T ++ELG N D G IR LH+ + +A+ + G++
Sbjct: 104 GWTRET----TIRELGTSKELAGVN--MRLDEGVIRELHW----HKEAEWAYVLEGKVRI 153
Query: 79 IAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN-TEVI 126
A+D S G Y P+G H L N TE +
Sbjct: 154 TALDPEGGS--------FVDDLEKGDLWYFPSGHPHSLQGLSPNGTEFL 194
>gi|298353051|gb|ADI77029.1| QdtA [Escherichia coli]
Length = 132
Score = 38.1 bits (88), Expect = 0.68, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 11/68 (16%)
Query: 6 VRILKTRKFEDSRGWFS---QTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
V+++ + D RG + Y+ + + + F+ G +RG H +
Sbjct: 4 VKLIPLQTHGDDRGSLVALEEGYN--------IPFQIKRVYYIFNTKKGVMRGFHAHKNL 55
Query: 63 YAQAKLVR 70
A VR
Sbjct: 56 KQVAIAVR 63
>gi|302669720|ref|YP_003829680.1| NAD-dependent epimerase/dehydratase [Butyrivibrio proteoclasticus
B316]
gi|302394193|gb|ADL33098.1| NAD-dependent epimerase/dehydratase [Butyrivibrio proteoclasticus
B316]
Length = 412
Score = 38.1 bits (88), Expect = 0.68, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 21/120 (17%)
Query: 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAK 67
I ED RG F++ Y S L + N S G I+G H+ +
Sbjct: 283 IFDIPTHEDDRGSFTEIYKS-------LNCGQISINVS---KPGVIKGQHWHNSKWEIFI 332
Query: 68 LVRCIAGR--IFDIAVDIRRNSPTYGC---WVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
++GR I + + I + G ++ E+S + + + G+ H + L
Sbjct: 333 ---VVSGRALIQERKLGIDPET---GKEYPVINFEVSGDKLQAVQMLPGYTHNIINLSDT 386
>gi|258568230|ref|XP_002584859.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237906305|gb|EEP80706.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 410
Score = 38.1 bits (88), Expect = 0.72, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 14/82 (17%)
Query: 46 FSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEIS-ANNGL 104
+ G IR +H+ R A+ AGRI AV+ G E+S + G
Sbjct: 106 VHMEKGAIRQMHWHRV----AEWGYVYAGRILVSAVNEN------GQ---FELSYLDVGD 152
Query: 105 QIYIPTGFAHGFMTLEMNTEVI 126
Y P G AH LE EV+
Sbjct: 153 IYYFPKGTAHSLQGLEDENEVL 174
>gi|293400941|ref|ZP_06645086.1| capsular polysaccharide biosynthesis protein Cap5F
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305967|gb|EFE47211.1| capsular polysaccharide biosynthesis protein Cap5F
[Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 377
Score = 38.1 bits (88), Expect = 0.73, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 18/102 (17%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSF-DCGTIRGLHFQRPPYAQAKLVRCI 72
+D RG F++ + ++ S + G ++G H+ K V +
Sbjct: 261 HQDVRGSFTEMFHMDTYGQV-----------SVNVLHPGIVKGNHWHMSKN--EKYV-VV 306
Query: 73 AGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
AG ++ + ++ +SAN + IP G+ H
Sbjct: 307 AGEGNVKLRNLYNDDH---KLLTYHLSANKMEVVDIPPGYLH 345
>gi|296818877|ref|XP_002849771.1| oxalate decarboxylase [Arthroderma otae CBS 113480]
gi|238840224|gb|EEQ29886.1| oxalate decarboxylase [Arthroderma otae CBS 113480]
Length = 403
Score = 38.1 bits (88), Expect = 0.77, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 46 FSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQ 105
G IR +H+ R A+ AG I AV G + +++ G
Sbjct: 105 VHLTKGGIRQMHWHRV----AEWGYVYAGAILVFAVSED------GRYQIDKLTP--GDI 152
Query: 106 IYIPTGFAHGFMTLEMNTEVI 126
Y P G AH F LE EV+
Sbjct: 153 YYFPKGAAHSFQGLEDENEVL 173
>gi|311069841|ref|YP_003974764.1| oxalate decarboxylase [Bacillus atrophaeus 1942]
gi|310870358|gb|ADP33833.1| oxalate decarboxylase [Bacillus atrophaeus 1942]
Length = 385
Score = 37.7 bits (87), Expect = 0.82, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 15/99 (15%)
Query: 31 KELGLQDVFVQDNH-SFSF--DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNS 87
+E+ ++++ V DN S + G IR LH+ + +A+ I G VD + S
Sbjct: 66 REVTVRELPVSDNIASVNMRLKPGAIRELHW----HKEAEWAYVIYGSARITLVDEKGRS 121
Query: 88 PTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126
G Y P+G H L+ E +
Sbjct: 122 --------FIDDVGEGDLWYFPSGLPHSIQALDEGCEFL 152
>gi|298386243|ref|ZP_06995799.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
gi|298260620|gb|EFI03488.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
Length = 146
Score = 37.7 bits (87), Expect = 0.83, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 52 TIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRR-NSPTYGCW-VSLEISANNGLQIYIP 109
IR H + + K I G V I SP +SA++ + IP
Sbjct: 43 IIRAWHAHQ---YEKKWFYAIKGSFTTAFVKIDNWESPAIDLVPEVFHLSASDSKILLIP 99
Query: 110 TGFAHGFMTLEMNTEVI 126
G+A+G E ++ ++
Sbjct: 100 EGYANGIKADEPDSILM 116
>gi|312217037|emb|CBX96986.1| similar to oxalate decarboxylase oxdC [Leptosphaeria maculans]
Length = 388
Score = 37.7 bits (87), Expect = 0.87, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 19/109 (17%)
Query: 19 GWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFD 78
GW +T ++ELG N D G IR LH+ + +A+ + G +
Sbjct: 118 GWTRET----TVRELGTSKELAGVN--MRLDHGVIRELHW----HKEAEWAYVLEGEVRI 167
Query: 79 IAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN-TEVI 126
A+D S G Y P+G H L N TE +
Sbjct: 168 TALDAEGGS--------FVDDLKKGDLWYFPSGHPHSLQGLSPNGTEFL 208
>gi|302421936|ref|XP_003008798.1| oxalate decarboxylase oxdC [Verticillium albo-atrum VaMs.102]
gi|261351944|gb|EEY14372.1| oxalate decarboxylase oxdC [Verticillium albo-atrum VaMs.102]
Length = 320
Score = 37.7 bits (87), Expect = 0.87, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
+ G IR LH+ R A+ G + AVD G +V+ ++ G Y
Sbjct: 119 EKGAIRELHWHRV----AEWGFVYNGSVLVSAVDEN------GKFVNEKL--EYGDIWYF 166
Query: 109 PTGFAHGFMTLEMNTEVI 126
P G AH L+ + E +
Sbjct: 167 PKGAAHTVQGLDDHNEFL 184
>gi|157691587|ref|YP_001486049.1| oxalate decarboxylase [Bacillus pumilus SAFR-032]
gi|157680345|gb|ABV61489.1| oxalate decarboxylase [Bacillus pumilus SAFR-032]
Length = 387
Score = 37.7 bits (87), Expect = 0.94, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G IR LH+ + +A+ I G +VD G + +++ G Y
Sbjct: 88 KPGAIRELHW----HKEAEWAYMIYGEARITSVDAE------GRNFTEDVTE--GDLWYF 135
Query: 109 PTGFAHGFMTLEMNTEVI 126
P+G H LE E +
Sbjct: 136 PSGLPHSIQALEPGAEFL 153
>gi|169350260|ref|ZP_02867198.1| hypothetical protein CLOSPI_01004 [Clostridium spiroforme DSM 1552]
gi|169293043|gb|EDS75176.1| hypothetical protein CLOSPI_01004 [Clostridium spiroforme DSM 1552]
Length = 399
Score = 37.3 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 20/124 (16%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++ +K N S G +G H+ + +V G
Sbjct: 286 DERGSFTELLKTK-------NCGQFSVNIS---KPGITKGQHWHHSKWEFFIVVS-GHGL 334
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKV--TDFY 133
I + +D + E+S + I++ G+ H + L + +++ + + +
Sbjct: 335 IQERKIDSDE-------VIEFEVSGDKIEAIHMLPGYTHNIINLSDSEDLVTVMWANESF 387
Query: 134 SVEH 137
EH
Sbjct: 388 DPEH 391
>gi|169350025|ref|ZP_02866963.1| hypothetical protein CLOSPI_00765 [Clostridium spiroforme DSM 1552]
gi|169293238|gb|EDS75371.1| hypothetical protein CLOSPI_00765 [Clostridium spiroforme DSM 1552]
Length = 323
Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 20/124 (16%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++ +K N S G +G H+ + +V G
Sbjct: 210 DERGSFTELLKTK-------NCGQFSVNIS---KPGITKGQHWHHSKWEFFIVVS-GHGL 258
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKV--TDFY 133
I + +D + E+S + I++ G+ H + L + +++ + + +
Sbjct: 259 IQERKIDSDE-------VIEFEVSGDKIEAIHMLPGYTHNIINLSDSEDLVTVMWANESF 311
Query: 134 SVEH 137
EH
Sbjct: 312 DPEH 315
>gi|242215663|ref|XP_002473645.1| predicted protein [Postia placenta Mad-698-R]
gi|220727252|gb|EED81177.1| predicted protein [Postia placenta Mad-698-R]
Length = 364
Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 12/76 (15%)
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPT 110
G +R LH+ + A+ I GR+ +D +G E G + P
Sbjct: 71 GAVRDLHW----HNDAEWSYIIEGRVRITGID-------FGGHY-FEEDVEKGDLWFFPA 118
Query: 111 GFAHGFMTLEMNTEVI 126
G H LE E +
Sbjct: 119 GVPHSLQGLEGGCEFL 134
>gi|94992306|ref|YP_600405.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS2096]
gi|94545814|gb|ABF35861.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptococcus pyogenes
MGAS2096]
Length = 54
Score = 37.3 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 2 NINPVRILKTRKFEDSRGWFSQTYSSK 28
I + D+RGWF + + K
Sbjct: 17 EIPGLLEFDIPVRGDNRGWFKENFQRK 43
>gi|145234735|ref|XP_001390016.1| oxalate decarboxylase oxdC [Aspergillus niger CBS 513.88]
gi|134057689|emb|CAK38087.1| unnamed protein product [Aspergillus niger]
Length = 457
Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 13/77 (16%)
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPT 110
G IR LH+ + +A+ +AGR+ +D+ S G Y P+
Sbjct: 156 GVIRELHW----HREAEWAYVLAGRVRVTGLDLEGGS--------FIDDLEEGDLWYFPS 203
Query: 111 GFAHGFMTLEMN-TEVI 126
G H L N TE +
Sbjct: 204 GHPHSLQGLSPNGTEFL 220
>gi|194335695|ref|YP_002017489.1| NAD-dependent epimerase/dehydratase [Pelodictyon
phaeoclathratiforme BU-1]
gi|194308172|gb|ACF42872.1| NAD-dependent epimerase/dehydratase [Pelodictyon
phaeoclathratiforme BU-1]
Length = 372
Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 43/131 (32%), Gaps = 29/131 (22%)
Query: 12 RKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
+ D RG ++ S Q S + G RG H+ + + +
Sbjct: 256 QIRSDERGSLAEMLKSNAFG---------QIFVSRT-KPGITRGNHYH---HTKTEKFMV 302
Query: 72 IAGRIFDIAVDIRRNSPTYGCWVSLE-----ISANNGLQIYIPTGFAHGFMTLEMNTEV- 125
+ G IR + +E +S + IP G+ H + N V
Sbjct: 303 VEGDAV-----IR-----FRQIDGVEVIEHRVSGKEFRVVDIPPGYTHHISNIGENELVT 352
Query: 126 IYKVTDFYSVE 136
++ ++ ++ E
Sbjct: 353 LFWASEIFNPE 363
>gi|319901803|ref|YP_004161531.1| hypothetical protein Bache_1967 [Bacteroides helcogenes P 36-108]
gi|319416834|gb|ADV43945.1| hypothetical protein Bache_1967 [Bacteroides helcogenes P 36-108]
Length = 143
Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 57 HFQRPPYAQAKLVR----------CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQ- 105
+F + QAK + G + + D R S T G + IS Q
Sbjct: 38 YFSHIEHGQAKGWKRHNRMTLNLIVPVGAVKFVVYDDRDGSETKGKFEEFIISPETNYQR 97
Query: 106 IYIPTGFAHGFMTLEMNTEVI 126
+ + G F + T ++
Sbjct: 98 LTVAPGIWMAFYGVGEGTSIL 118
>gi|315043692|ref|XP_003171222.1| oxalate decarboxylase oxdD [Arthroderma gypseum CBS 118893]
gi|311345011|gb|EFR04214.1| oxalate decarboxylase oxdD [Arthroderma gypseum CBS 118893]
Length = 404
Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 12/77 (15%)
Query: 50 CGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIP 109
G IR +H+ R A+ AG I AV G + +++ G Y P
Sbjct: 109 KGGIRQMHWHRV----AEWGYVYAGAILVSAVSED------GQYQIDKLTP--GDMYYFP 156
Query: 110 TGFAHGFMTLEMNTEVI 126
G AH F LE EV+
Sbjct: 157 KGAAHSFQGLEDENEVL 173
>gi|192289930|ref|YP_001990535.1| bicupin, oxalate decarboxylase family [Rhodopseudomonas palustris
TIE-1]
gi|192283679|gb|ACF00060.1| bicupin, oxalate decarboxylase family [Rhodopseudomonas palustris
TIE-1]
Length = 658
Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 12/76 (15%)
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPT 110
G +R LH+ + +A+ + GR AVD R G P+
Sbjct: 88 GVVRELHW----HKEAEWGYVLEGRCRVTAVDADRG--------VFVDDLKAGDIWLFPS 135
Query: 111 GFAHGFMTLEMNTEVI 126
G H E +
Sbjct: 136 GIPHSIQAHAEGCEFL 151
>gi|50429172|gb|AAT77171.1| FdtA [Escherichia coli]
Length = 130
Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 30/133 (22%)
Query: 12 RKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRC 71
+ F D RG ++ S + + + ++ RG H + ++V
Sbjct: 7 KVFGDERGSLI-SFESNK----NIPFEIKRVYYIYATREKISRGFHAHKKLK---QVVVA 58
Query: 72 IAGRIFDIAVDI-------RRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
+ G D VD NSP+ +L I + ++ H F +
Sbjct: 59 VHGSC-DFCVDNGLVRNTYHLNSPS----QALLIDSLCWREM-------HNF---SEDCV 103
Query: 125 VIYKVTDFYSVEH 137
++ +D+Y +
Sbjct: 104 LMVLASDYYDPDD 116
>gi|281422060|ref|ZP_06253059.1| capsular polysaccharide biosynthesis protein Cps4K [Prevotella
copri DSM 18205]
gi|281403849|gb|EFB34529.1| capsular polysaccharide biosynthesis protein Cps4K [Prevotella
copri DSM 18205]
Length = 408
Score = 36.9 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 43/127 (33%), Gaps = 26/127 (20%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D+RG F++ + V N S G +G H+ +++ + ++G
Sbjct: 290 DARGSFTELL-------HTITHGQVSINIS---KPGITKGEHWH---HSKFEYFTVVSGH 336
Query: 76 IFDIA---VDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN---TEVIYKV 129
D Y E+S + + + G+ H + L V+Y
Sbjct: 337 GLIQLRNEADPNAEILNY------EVSGDKIQSVIMLPGYTHNIINLSDTEDLVTVMY-C 389
Query: 130 TDFYSVE 136
+ ++ +
Sbjct: 390 NEIFNPQ 396
>gi|327293397|ref|XP_003231395.1| hypothetical protein TERG_08180 [Trichophyton rubrum CBS 118892]
gi|326466511|gb|EGD91964.1| hypothetical protein TERG_08180 [Trichophyton rubrum CBS 118892]
Length = 404
Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 46 FSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQ 105
G IR +H+ R A+ AG I AV G + +++ G
Sbjct: 105 VHLTKGGIRQMHWHRV----AEWGYVYAGSILVFAVTED------GQYQIDKLTP--GDM 152
Query: 106 IYIPTGFAHGFMTLEMNTEVI 126
Y P G AH F +E EV+
Sbjct: 153 YYFPKGAAHSFQGIEDENEVL 173
>gi|282851770|ref|ZP_06261133.1| conserved hypothetical protein [Lactobacillus gasseri 224-1]
gi|282557012|gb|EFB62611.1| conserved hypothetical protein [Lactobacillus gasseri 224-1]
Length = 54
Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 16/49 (32%)
Query: 142 AWQDKSIDITWP----------------LLDTILPSVSEKDQNLPFLNQ 174
AW D I I WP L D +++E+DQ L
Sbjct: 2 AWNDPKIGIEWPHLKGDYPGSPDASGYTLDDGTKLNMAERDQEWKGLKD 50
>gi|254470620|ref|ZP_05084023.1| oxalate decarboxylase [Pseudovibrio sp. JE062]
gi|211959762|gb|EEA94959.1| oxalate decarboxylase [Pseudovibrio sp. JE062]
Length = 378
Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 25/93 (26%), Gaps = 12/93 (12%)
Query: 45 SFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGL 104
S + G R LH+ A + GR ++ S T G
Sbjct: 75 SMKLEPGVARELHWHATAAEWA---FVMDGRCRTTVINPNGQSAT--------DDFEPGD 123
Query: 105 QIYIPTGFAHGFMTLEMN-TEVIYKVTDFYSVE 136
Y P G H L I + Y E
Sbjct: 124 VWYFPRGHGHSIQCLGDEPCHFILIFDNGYFSE 156
>gi|297616370|ref|YP_003701529.1| NAD-dependent epimerase/dehydratase [Syntrophothermus lipocalidus
DSM 12680]
gi|297144207|gb|ADI00964.1| NAD-dependent epimerase/dehydratase [Syntrophothermus lipocalidus
DSM 12680]
Length = 371
Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 18/113 (15%)
Query: 10 KTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLV 69
+ D RGW L E F Q S + G RG H+ + + +
Sbjct: 253 ELEMKHDHRGW---------LAEFIKSKQFGQIFVSRT-RPGITRGNHWH---HTKVEKF 299
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
I G+ I G +S E+S + + IP G+ H + N
Sbjct: 300 LVIEGKGIIQFRRIDT-----GEILSYEVSGEKPVVVDIPPGYTHSITNIGDN 347
>gi|319647797|ref|ZP_08002015.1| OxdC protein [Bacillus sp. BT1B_CT2]
gi|317390138|gb|EFV70947.1| OxdC protein [Bacillus sp. BT1B_CT2]
Length = 384
Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G IR LH+ + +A+ + G+ +VD G + G Y
Sbjct: 87 KPGAIRELHW----HKEAEWAYMLYGKARITSVDQD------GR--NFIEDVKEGDLWYF 134
Query: 109 PTGFAHGFMTLEMNTEVI 126
P+G H LE E +
Sbjct: 135 PSGLPHSIQALEDGCEFL 152
>gi|52081879|ref|YP_080670.1| oxalate decarboxylase [Bacillus licheniformis ATCC 14580]
gi|52787267|ref|YP_093096.1| OxdC [Bacillus licheniformis ATCC 14580]
gi|52005090|gb|AAU25032.1| oxalate decarboxylase [Bacillus licheniformis ATCC 14580]
gi|52349769|gb|AAU42403.1| OxdC [Bacillus licheniformis ATCC 14580]
Length = 384
Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G IR LH+ + +A+ + G+ +VD G + G Y
Sbjct: 87 KPGAIRELHW----HKEAEWAYMLYGKARITSVDQD------GR--NFIEDVKEGDLWYF 134
Query: 109 PTGFAHGFMTLEMNTEVI 126
P+G H LE E +
Sbjct: 135 PSGLPHSIQALEDGCEFL 152
>gi|29346759|ref|NP_810262.1| hypothetical protein BT_1349 [Bacteroides thetaiotaomicron
VPI-5482]
gi|29338656|gb|AAO76456.1| dTDP-4-dehydrorhamnose epimerase-like protein [Bacteroides
thetaiotaomicron VPI-5482]
Length = 148
Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQ-IYIPTGFAHGFM 117
G + I D R S TYG + + +S ++ + I G F
Sbjct: 65 VPVGMVKFIIYDDREGSMTYGKFEEVTLSPDSRYYRLTIAPGLWLAFC 112
>gi|326475927|gb|EGD99936.1| hypothetical protein TESG_07266 [Trichophyton tonsurans CBS 112818]
gi|326482969|gb|EGE06979.1| oxalate decarboxylase [Trichophyton equinum CBS 127.97]
Length = 405
Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 46 FSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQ 105
G IR +H+ R A+ AG I AV G + +++ G
Sbjct: 105 VHLTKGGIRQMHWHRV----AEWGYVYAGSILVFAVTED------GQYQIDKLTP--GDM 152
Query: 106 IYIPTGFAHGFMTLEMNTEVI 126
Y P G AH F +E EV+
Sbjct: 153 YYFPKGAAHSFQGIEDENEVL 173
>gi|303316544|ref|XP_003068274.1| Cupin family protein [Coccidioides posadasii C735 delta SOWgp]
gi|240107955|gb|EER26129.1| Cupin family protein [Coccidioides posadasii C735 delta SOWgp]
Length = 407
Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 46 FSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQ 105
G IR +H+ R A+ AGRI AVD G + + + G
Sbjct: 105 VHMSKGAIRQMHWHRV----AEWGYVYAGRILLSAVDEN------GQFQLDYL--DVGDM 152
Query: 106 IYIPTGFAHGFMTLEMNTEVI 126
Y P G AH +E EV+
Sbjct: 153 YYFPKGTAHSLQGMEDENEVL 173
>gi|119188119|ref|XP_001244666.1| hypothetical protein CIMG_04107 [Coccidioides immitis RS]
Length = 407
Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 46 FSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQ 105
G IR +H+ R A+ AGRI AVD G + + + G
Sbjct: 105 VHMSKGAIRQMHWHRV----AEWGYVYAGRILLSAVDEN------GQFQLDYL--DVGDM 152
Query: 106 IYIPTGFAHGFMTLEMNTEVI 126
Y P G AH +E EV+
Sbjct: 153 YYFPKGTAHSLQGMEDENEVL 173
>gi|126741035|ref|ZP_01756717.1| hypothetical protein RSK20926_00952 [Roseobacter sp. SK209-2-6]
gi|126717799|gb|EBA14519.1| hypothetical protein RSK20926_00952 [Roseobacter sp. SK209-2-6]
Length = 48
Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFV 40
+ + V + + ED+RG F + K+L E GL +V
Sbjct: 9 LPLPGVFHYQPQLHEDNRGSFGPSLLRKMLDEAGLNSTWV 48
>gi|226314643|ref|YP_002774539.1| oxalate decarboxylase [Brevibacillus brevis NBRC 100599]
gi|226097593|dbj|BAH46035.1| probable oxalate decarboxylase [Brevibacillus brevis NBRC 100599]
Length = 392
Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 12/80 (15%)
Query: 47 SFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQI 106
S G +R LH+ + QA+ + GR +VD R G +I G
Sbjct: 89 SLTPGGVRELHW----HQQAEWAYMLLGRARITSVDQR------GRNFIADIG--KGDLW 136
Query: 107 YIPTGFAHGFMTLEMNTEVI 126
Y P G H LE E +
Sbjct: 137 YFPPGIPHSIQGLEEGCEFL 156
>gi|304315461|ref|YP_003850608.1| dTDP-4-dehydrorhamnose 3,5-epimerase-related protein
[Methanothermobacter marburgensis str. Marburg]
gi|302588920|gb|ADL59295.1| dTDP-4-dehydrorhamnose 3,5-epimerase-related protein
[Methanothermobacter marburgensis str. Marburg]
Length = 68
Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQ-DVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI 72
F D RG+ + L + G++ Q S+S+ G ++G H Q + C+
Sbjct: 8 FSDERGFLIELMR---LDDHGMKAADIKQIIASYSY-PGMVKGWHIHSR---QQDRLICV 60
Query: 73 AGRIFDIA 80
G +
Sbjct: 61 HGMVKLAL 68
>gi|46109896|ref|XP_382006.1| hypothetical protein FG01830.1 [Gibberella zeae PH-1]
Length = 238
Score = 36.6 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 40/129 (31%), Gaps = 26/129 (20%)
Query: 28 KLLKELGLQDVFV------QDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAV 81
+ + G ++ Q +H S + L +R AG D
Sbjct: 45 ETFTKNGWDVEWIFRYPQTQLSHFHSEAHECMAVLSGTAT-------IRFGAGDTSD--- 94
Query: 82 DIRRNSPTYGC-WV--SLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHD 138
D++ N TYG W +E+ A G IP G AH + E S
Sbjct: 95 DLQEN--TYGSSWENGGIELQAEAGDVFVIPAGVAHKTHNTKPEAEFKLL-----SPGVG 147
Query: 139 SGVAWQDKS 147
G+ D
Sbjct: 148 HGIEADDPR 156
>gi|320038051|gb|EFW19987.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 385
Score = 36.6 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 46 FSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQ 105
G IR +H+ R A+ AGRI AVD G + + + G
Sbjct: 83 VHMSKGAIRQMHWHRV----AEWGYVYAGRILLSAVDEN------GQFQLDYL--DVGDM 130
Query: 106 IYIPTGFAHGFMTLEMNTEVI 126
Y P G AH +E EV+
Sbjct: 131 YYFPKGTAHSLQGMEDENEVL 151
>gi|294672889|ref|YP_003573505.1| hypothetical protein PRU_0102 [Prevotella ruminicola 23]
gi|294472029|gb|ADE81418.1| conserved hypothetical protein [Prevotella ruminicola 23]
Length = 398
Score = 36.6 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 22/123 (17%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++ L Q + + S G +G H+ + +V G
Sbjct: 283 DERGSFTE---------LIHTLNAGQVSINIS-KPGITKGQHWHNTKWEFFIVV-AGHGL 331
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN---TEVIYKVTDF 132
I + + + E+S +N I++ G+ H + L V+Y +
Sbjct: 332 IQERKIGSDE-------VIEFEVSGDNIQCIHMLPGYTHNIINLSNTENLVTVMY-CNEI 383
Query: 133 YSV 135
++
Sbjct: 384 FNP 386
>gi|303249285|ref|ZP_07335518.1| WxcM domain protein [Desulfovibrio fructosovorans JJ]
gi|302489324|gb|EFL49280.1| WxcM domain protein [Desulfovibrio fructosovorans JJ]
Length = 136
Score = 36.6 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 39/134 (29%), Gaps = 18/134 (13%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62
++ VR+L D RG S + E G F + RG H R
Sbjct: 5 LDGVRLLDVATLRDDRGALS-------VIEGGRHIPFAVARIFYMHGMTADRGGHAHR-- 55
Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+ + +AG + D S T + + +Y+P + +
Sbjct: 56 -DTEQCILAVAGSLTMALTD---GSHT----ADYRLD-DPARALYLPPMIFLDIRDISPD 106
Query: 123 TEVIYKVTDFYSVE 136
+ + Y
Sbjct: 107 AVCLVLASTPYDPA 120
>gi|255930871|ref|XP_002556992.1| Pc12g00920 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581611|emb|CAP79719.1| Pc12g00920 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 454
Score = 36.6 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPT 110
G IR LH+ + +A+ +AG++ A+D+ T+ G Y P
Sbjct: 154 GVIRELHW----HTEAEWAYVLAGKVRVTALDLEGG--TFMD------DLEAGDLWYFPA 201
Query: 111 GFAHGFMTLEMN-TEVI 126
G H L N TE +
Sbjct: 202 GHPHSLQGLGENGTEFL 218
>gi|297531305|ref|YP_003672580.1| hypothetical protein GC56T3_3071 [Geobacillus sp. C56-T3]
gi|297254557|gb|ADI28003.1| hypothetical protein GC56T3_3071 [Geobacillus sp. C56-T3]
Length = 207
Score = 36.6 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 17/109 (15%)
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEI--SANNGLQIYIPTGFAHGFMTLEMNTE------VI 126
I + VD R+ SPT +E+ + +YI G A F ++ T
Sbjct: 72 EIMGLFVDCRKGSPTL--HKKVELKFKPDPRKHLYIERGIAKMFTNMKNITIRSEPIWFS 129
Query: 127 YKVTDFYSVEHDSGVAWQDKSID------I-TWPLLDTILPSVSEKDQN 168
V Y++ +DS + D + I PL + +L + E++Q
Sbjct: 130 TNVNIEYNIGNDSLIVPMDTELGDFPVVQINELPLPNRVLKVILEREQQ 178
>gi|255692532|ref|ZP_05416207.1| capsular polysaccharide biosynthesis protein Cps4K [Bacteroides
finegoldii DSM 17565]
gi|260621812|gb|EEX44683.1| capsular polysaccharide biosynthesis protein Cps4K [Bacteroides
finegoldii DSM 17565]
Length = 400
Score = 36.6 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 28/134 (20%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++ LK + V N S G +G H+ + ++G+
Sbjct: 286 DERGSFTEL-----LKTVNCGQFSV--NIS---KPGVTKGQHWHHTKWE---FFIVVSGK 332
Query: 76 --IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFY 133
I +D ++ E+S + +++ G+ H + L + VT +
Sbjct: 333 ALIQQRRIDTDE-------VLNFEVSGDKIEAVHMLPGYTHNIINLSDTCD---LVTLMW 382
Query: 134 SVEHDSGVAWQDKS 147
+ E
Sbjct: 383 ANEA---FDPNCPD 393
>gi|308068995|ref|YP_003870600.1| Oxalate decarboxylase oxdD [Paenibacillus polymyxa E681]
gi|305858274|gb|ADM70062.1| Oxalate decarboxylase oxdD [Paenibacillus polymyxa E681]
Length = 395
Score = 36.6 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 12/80 (15%)
Query: 47 SFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQI 106
S G +R LH+ + QA+ + G AVD G + G
Sbjct: 90 SLTPGGVRELHW----HQQAEWSYMLLGSARITAVDQN------GR--NFIADVGPGDLW 137
Query: 107 YIPTGFAHGFMTLEMNTEVI 126
Y P G H LE E +
Sbjct: 138 YFPPGIPHSIQGLEDGCEFL 157
>gi|85114948|ref|XP_964781.1| oxalate decarboxylase oxdC [Neurospora crassa OR74A]
gi|28926575|gb|EAA35545.1| oxalate decarboxylase oxdC [Neurospora crassa OR74A]
Length = 455
Score = 36.2 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 13/79 (16%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
+ G IR LH+ + +A+ + G++ A+D + G Y
Sbjct: 149 EKGVIRELHW----HKEAEWAYVLEGKVRVTALDYEGGN--------FIDDLEKGDLWYF 196
Query: 109 PTGFAHGFMTLEMN-TEVI 126
P+G H L N TE +
Sbjct: 197 PSGIPHSLQGLGDNGTEFL 215
>gi|310830098|ref|YP_003962455.1| capsular polysaccharide synthesis enzyme CapF [Eubacterium limosum
KIST612]
gi|308741832|gb|ADO39492.1| capsular polysaccharide synthesis enzyme CapF [Eubacterium limosum
KIST612]
Length = 398
Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 22/125 (17%)
Query: 12 RKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSF-DCGTIRGLHFQRPPYAQAKLVR 70
+ D+RG F++ + +L S + G RG H+ + +VR
Sbjct: 258 KTHTDARGAFAEFIKTPDRGQL-----------SVNITKAGVTRGDHWHHTKNEKFLVVR 306
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM--TLEMNTEVIYK 128
GRI R S + +S + IP G+ H + E +I+
Sbjct: 307 -GTGRIRL----RRLGSD---RILEYPVSGEQLEVMDIPAGYTHALVNDGSEDMVTLIWA 358
Query: 129 VTDFY 133
FY
Sbjct: 359 CEIFY 363
>gi|78222537|ref|YP_384284.1| WxcM-like protein [Geobacter metallireducens GS-15]
gi|78193792|gb|ABB31559.1| WxcM-like protein [Geobacter metallireducens GS-15]
Length = 309
Score = 36.2 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 40/147 (27%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF-------VQDNHSFSFDCGTIRG 55
I V+ ++ D RG S E G F V D S +RG
Sbjct: 177 IPGVQFVRLPIIPDLRGSLS-------FAEFGQYLPFIPKRYFLVFDVQSRE-----VRG 224
Query: 56 LHFQRPPYAQAKLVRCIAGRIFDIAVD--IRRNSPTYGCWVSLEISANNGLQIYIPT--- 110
H + + + + C+ G + D R ++ G ++IP
Sbjct: 225 EHAHKELH---QFLVCVKGACSVMVDDGNCREE---------YILN-TPGAALHIPPLVW 271
Query: 111 GFAHGFMTLEMNTEVIYKVTDFYSVEH 137
G + + + ++ +D Y E
Sbjct: 272 GVQYKY---SPDAVLMVLASDVYKPED 295
>gi|295293754|gb|ADF88281.1| hypothetical protein [Aphanizomenon sp. 10E6]
Length = 147
Score = 36.2 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Query: 65 QAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124
Q + + G+I ++ R T+ +S I IP G HG + L
Sbjct: 50 QTDQLLVVKGQILITSLHNREYQYTF-------LSEKEPTIITIPPGILHGAINLSEEPC 102
Query: 125 VIYKVTDFYSVEHDSGVAWQDKSI--DITW 152
++ H+ + DI W
Sbjct: 103 IVVNAILHDGQTHEKDYRPIKPPLPYDIDW 132
>gi|159795541|pdb|2UY9|A Chain A, E162a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G IR LH+ + +A+ I G VD + S G Y
Sbjct: 87 KPGAIRELHW----HKEAEWAYMIYGSARVTIVDEKGRS--------FIDDVGEGDLWYF 134
Query: 109 PTGFAHGFMTLEMNTEVI 126
P+G H LE E +
Sbjct: 135 PSGLPHSIQALEEGAEFL 152
>gi|291485818|dbj|BAI86893.1| oxalate decarboxylase [Bacillus subtilis subsp. natto BEST195]
Length = 385
Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G IR LH+ + +A+ I G VD + S G Y
Sbjct: 87 KPGAIRELHW----HKEAEWAYMIYGSARVTIVDEKGRS--------FIDDVGEGDLWYF 134
Query: 109 PTGFAHGFMTLEMNTEVI 126
P+G H LE E +
Sbjct: 135 PSGLPHSIQALEEGAEFL 152
>gi|159795543|pdb|2UYB|A Chain A, S161a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G IR LH+ + +A+ I G VD + S G Y
Sbjct: 87 KPGAIRELHW----HKEAEWAYMIYGSARVTIVDEKGRS--------FIDDVGEGDLWYF 134
Query: 109 PTGFAHGFMTLEMNTEVI 126
P+G H LE E +
Sbjct: 135 PSGLPHSIQALEEGAEFL 152
>gi|16080377|ref|NP_391204.1| oxalate decarboxylase [Bacillus subtilis subsp. subtilis str. 168]
gi|221311273|ref|ZP_03593120.1| oxalate decarboxylase [Bacillus subtilis subsp. subtilis str. 168]
gi|221315600|ref|ZP_03597405.1| oxalate decarboxylase [Bacillus subtilis subsp. subtilis str. NCIB
3610]
gi|221320516|ref|ZP_03601810.1| oxalate decarboxylase [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221324800|ref|ZP_03606094.1| oxalate decarboxylase [Bacillus subtilis subsp. subtilis str. SMY]
gi|21362729|sp|O34714|OXDC_BACSU RecName: Full=Oxalate decarboxylase oxdC
gi|21730642|pdb|1L3J|A Chain A, Crystal Structure Of Oxalate Decarboxylase Formate Complex
gi|46015908|pdb|1UW8|A Chain A, Crystal Structure Of Oxalate Decarboxylase
gi|2635821|emb|CAB15314.1| oxalate decarboxylase [Bacillus subtilis subsp. subtilis str. 168]
gi|2832803|emb|CAA11727.1| YvrK protein [Bacillus subtilis]
Length = 385
Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G IR LH+ + +A+ I G VD + S G Y
Sbjct: 87 KPGAIRELHW----HKEAEWAYMIYGSARVTIVDEKGRS--------FIDDVGEGDLWYF 134
Query: 109 PTGFAHGFMTLEMNTEVI 126
P+G H LE E +
Sbjct: 135 PSGLPHSIQALEEGAEFL 152
>gi|78223854|ref|YP_385601.1| PDZ/DHR/GLGF:ankyrin [Geobacter metallireducens GS-15]
gi|78195109|gb|ABB32876.1| PDZ/DHR/GLGF:Ankyrin [Geobacter metallireducens GS-15]
Length = 1003
Score = 36.2 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCG-TIRGLHFQRP 61
I V ++ +++RG F++++ K ++ + + F Q + S S H
Sbjct: 361 IAGVSFYESDTLDNTRG-FAESFDRKDVRRIVARIEFDQASLSRSRGGHSVTVSWHEPTG 419
Query: 62 PYAQAKLVRCIAG 74
++ + G
Sbjct: 420 GMLKSANYQVTQG 432
>gi|302499316|ref|XP_003011654.1| hypothetical protein ARB_02208 [Arthroderma benhamiae CBS 112371]
gi|291175206|gb|EFE31014.1| hypothetical protein ARB_02208 [Arthroderma benhamiae CBS 112371]
Length = 425
Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 46 FSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQ 105
G IR +H+ R A+ AG I AV G + +++ G
Sbjct: 105 VHLTKGGIRQMHWHRV----AEWGYVYAGSILVFAVTED------GQYQIDKLTP--GDI 152
Query: 106 IYIPTGFAHGFMTLEMNTEVI 126
Y P G AH F +E EV+
Sbjct: 153 YYFPKGAAHSFQGIEDENEVL 173
>gi|153003637|ref|YP_001377962.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
[Anaeromyxobacter sp. Fw109-5]
gi|152027210|gb|ABS24978.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
[Anaeromyxobacter sp. Fw109-5]
Length = 460
Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 3 INPVRILKTRKFEDSRG 19
I + ++ +F D RG
Sbjct: 61 IEDLVVITPERFRDERG 77
>gi|159795548|pdb|2V09|A Chain A, Sens161-164dssn Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 385
Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G IR LH+ + +A+ I G VD + S G Y
Sbjct: 87 KPGAIRELHW----HKEAEWAYMIYGSARVTIVDEKGRS--------FIDDVGEGDLWYF 134
Query: 109 PTGFAHGFMTLEMNTEVI 126
P+G H LE E +
Sbjct: 135 PSGLPHSIQALEEGAEFL 152
>gi|159795542|pdb|2UYA|A Chain A, Del162-163 Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 383
Score = 36.2 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G IR LH+ + +A+ I G VD + S G Y
Sbjct: 87 KPGAIRELHW----HKEAEWAYMIYGSARVTIVDEKGRS--------FIDDVGEGDLWYF 134
Query: 109 PTGFAHGFMTLEMNTEVI 126
P+G H LE E +
Sbjct: 135 PSGLPHSIQALEEGAEFL 152
>gi|194017930|ref|ZP_03056538.1| oxalate decarboxylase OxdD [Bacillus pumilus ATCC 7061]
gi|194010396|gb|EDW19970.1| oxalate decarboxylase OxdD [Bacillus pumilus ATCC 7061]
Length = 387
Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G IR LH+ + +A+ I G +VD G + +++ G Y
Sbjct: 88 KPGAIRELHW----HKEAEWAYMIYGDARITSVDAE------GRNFTEDVTE--GDLWYF 135
Query: 109 PTGFAHGFMTLEMNTEVI 126
P+G H LE E +
Sbjct: 136 PSGLPHSIQALEPGAEFL 153
>gi|327439932|dbj|BAK16297.1| thermophilic glucose-6-phosphate isomerase [Solibacillus silvestris
StLB046]
Length = 279
Score = 36.2 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 16/90 (17%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G +R LH+ + + + GR AVD N + V + G Y
Sbjct: 95 TPGGVRELHW----HKEVEFCFMTVGRARITAVDQ--NGKNFIADVGV------GDLWYF 142
Query: 109 PTGFAHGFMTLEMNTEVIYKVTDFYSVEHD 138
P G H F LE E + + +D
Sbjct: 143 PPGIPHSFQGLEEGCEFLLM----WHPNND 168
>gi|167584347|ref|ZP_02376735.1| Oxalate decarboxylase [Burkholderia ubonensis Bu]
Length = 418
Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 24/118 (20%)
Query: 21 FSQTYS--SKLLKELGLQDVFVQDNHSFSFD---------CGTIRGLHFQRPPYAQAKLV 69
F +++ K ++ G QD+ + S G IR +H+ + QA+
Sbjct: 81 FWASFNNAHKRIQNGGWAREVTQDDFAISETISGVNMRLTRGGIREMHW----HQQAEWA 136
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL-EMNTEVI 126
+ GR +D + P+ G Y P G H L E +
Sbjct: 137 FMLDGRCRITVLD-EQGRPS-------VQDVKTGDLWYFPPGLPHSLQGLGSDGAEFL 186
>gi|21730352|pdb|1J58|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 36.2 bits (83), Expect = 2.8, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G IR LH+ + +A+ I G VD + S G Y
Sbjct: 87 KPGAIRELHW----HKEAEWAYXIYGSARVTIVDEKGRS--------FIDDVGEGDLWYF 134
Query: 109 PTGFAHGFMTLEMNTEVI 126
P+G H LE E +
Sbjct: 135 PSGLPHSIQALEEGAEFL 152
>gi|331084389|ref|ZP_08333492.1| hypothetical protein HMPREF0992_02416 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330401485|gb|EGG81069.1| hypothetical protein HMPREF0992_02416 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 390
Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 18/107 (16%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++ L Q + + S G +G H+ + +AG
Sbjct: 275 DDRGSFTE---------LVHTADCGQVSINIS-RPGITKGEHWHNSKWELFI---VVAGH 321
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
+I G V E+S + I++ G+ H + L
Sbjct: 322 GLIQERNIHT-----GETVEFEVSGDRIEAIHMIPGWTHNIINLSET 363
>gi|297161840|gb|ADI11552.1| bicupin, oxalate decarboxylase family protein [Streptomyces
bingchenggensis BCW-1]
Length = 383
Score = 36.2 bits (83), Expect = 2.9, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G IR LH+ + Q++ + G+ AVD + + G +
Sbjct: 89 KPGAIRELHW----HKQSEWAYILEGKCRISAVDQ--EGRNFLE------DVSAGDLWFF 136
Query: 109 PTGFAHGFMTLEMNTEVI 126
P G H LE E +
Sbjct: 137 PQGIPHHIQALEEGVEFL 154
>gi|317159168|ref|XP_001827593.2| oxalate decarboxylase oxdC [Aspergillus oryzae RIB40]
Length = 376
Score = 35.8 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G IR LH+ R A+ +G + VD G + + ++ G Y
Sbjct: 79 KKGAIRELHWHRV----AEWGFLYSGSLLLSGVDEN------GQFTTEKL--EEGDIWYF 126
Query: 109 PTGFAHGFMTLEMNTEVI 126
P G AH L+ E +
Sbjct: 127 PKGVAHNVQGLDDENEYL 144
>gi|302667629|ref|XP_003025396.1| hypothetical protein TRV_00457 [Trichophyton verrucosum HKI 0517]
gi|291189504|gb|EFE44785.1| hypothetical protein TRV_00457 [Trichophyton verrucosum HKI 0517]
Length = 425
Score = 35.8 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 46 FSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQ 105
G IR +H+ R A+ AG I AV G + +++ G
Sbjct: 105 VHLTKGGIRQMHWHRV----AEWGYVYAGSILVFAVTED------GQYQIDKLTP--GDI 152
Query: 106 IYIPTGFAHGFMTLEMNTEVI 126
Y P G AH F +E EV+
Sbjct: 153 YYFPKGAAHSFQGIEDENEVL 173
>gi|238507243|ref|XP_002384823.1| oxalate decarboxylase oxdC, putative [Aspergillus flavus NRRL3357]
gi|220689536|gb|EED45887.1| oxalate decarboxylase oxdC, putative [Aspergillus flavus NRRL3357]
Length = 414
Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G IR LH+ R A+ +G + VD G + + ++ G Y
Sbjct: 117 KKGAIRELHWHRV----AEWGFLYSGSLLLSGVDEN------GQFTTEKL--EEGDIWYF 164
Query: 109 PTGFAHGFMTLEMNTEVI 126
P G AH L+ E +
Sbjct: 165 PKGVAHNVQGLDDENEYL 182
>gi|257468071|ref|ZP_05632167.1| NAD-dependent epimerase/dehydratase [Fusobacterium ulcerans ATCC
49185]
gi|317062357|ref|ZP_07926842.1| NAD-dependent epimerase/dehydratase [Fusobacterium ulcerans ATCC
49185]
gi|313688033|gb|EFS24868.1| NAD-dependent epimerase/dehydratase [Fusobacterium ulcerans ATCC
49185]
Length = 370
Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 18/101 (17%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA 73
+D+RG F + Q + S S G RG H+ + I
Sbjct: 256 HKDNRGAFVEILR---------TVDSGQFSISTS-KPGITRGNHYHNTKNEKFL---VIK 302
Query: 74 GRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
G +I + + +S + IP G+ H
Sbjct: 303 GEAVIRFRNIYSD-----KVIEYHVSDKKLEVVDIPVGYTH 338
>gi|169840643|ref|ZP_02873756.1| hypothetical protein cdivTM_26064 [candidate division TM7
single-cell isolate TM7a]
Length = 42
Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 131 DFYSVEHDSGVAWQDKSIDITWPLLD 156
+ +S +DSG+ W D++I+I W +
Sbjct: 11 NHFSDGNDSGILWNDETINIDWKFEE 36
>gi|83776341|dbj|BAE66460.1| unnamed protein product [Aspergillus oryzae]
Length = 404
Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G IR LH+ R A+ +G + VD G + + ++ G Y
Sbjct: 107 KKGAIRELHWHRV----AEWGFLYSGSLLLSGVDEN------GQFTTEKL--EEGDIWYF 154
Query: 109 PTGFAHGFMTLEMNTEVI 126
P G AH L+ E +
Sbjct: 155 PKGVAHNVQGLDDENEYL 172
>gi|330872595|gb|EGH06744.1| hypothetical protein PSYMP_00520 [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 408
Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 75 RIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+I VD R S T V L + ++ IP G AH F LE
Sbjct: 82 KIDGFFVDCREGSATLHQIVRLRFKPSLERRLVIPRGVAHTFDNLE 127
>gi|325569455|ref|ZP_08145580.1| capsular polysaccharide biosynthesis protein Cap5F [Enterococcus
casseliflavus ATCC 12755]
gi|325157289|gb|EGC69451.1| capsular polysaccharide biosynthesis protein Cap5F [Enterococcus
casseliflavus ATCC 12755]
Length = 369
Score = 35.8 bits (82), Expect = 3.3, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 42/128 (32%), Gaps = 29/128 (22%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++ ++ + V N S G ++G H+ + +V G
Sbjct: 257 DDRGSFTEFLRTEDRGQ-------VSINIS---KPGIVKGNHWHHTKNEKFLVVS-GKGV 305
Query: 76 IFDIAVDIRRNSPTYGCWVSLEI-----SANNGLQIYIPTGFAHGFMTLEMNTEVIYK-V 129
I + S EI S N + IP G+ H L V V
Sbjct: 306 IR------------FRKIDSKEIIEYFVSGENLEVVDIPVGYTHNIENLGDTDMVTVMWV 353
Query: 130 TDFYSVEH 137
+ + E+
Sbjct: 354 NETFDPEN 361
>gi|302408473|ref|XP_003002071.1| oxalate decarboxylase oxdC [Verticillium albo-atrum VaMs.102]
gi|261358992|gb|EEY21420.1| oxalate decarboxylase oxdC [Verticillium albo-atrum VaMs.102]
Length = 480
Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 13/77 (16%)
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPT 110
G IR LH+ + +A+ + G++ A+D + G Y P+
Sbjct: 149 GVIRELHW----HKEAEWAYVLEGKVRVTALDYEGGN--------FIDDLEKGDLWYFPS 196
Query: 111 GFAHGFMTLEMN-TEVI 126
G H L N TE +
Sbjct: 197 GIPHSLQGLSENGTEFL 213
>gi|254373351|ref|ZP_04988839.1| hypothetical protein FTCG_00938 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151571077|gb|EDN36731.1| hypothetical protein FTCG_00938 [Francisella novicida GA99-3549]
Length = 134
Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 29/145 (20%)
Query: 7 RILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQA 66
++L + D RG ++ + + + + RG H +
Sbjct: 3 KLLDFKVLGDERGNLISLEQNR-----NIPFNIKRVYYIYGTKENVRRGFHAHKE---LE 54
Query: 67 KLVRCIAGRIFDIAVD------IRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
+++ C++G + D I NSP G + IP F H
Sbjct: 55 QVLVCVSGSCKVLMDDGKNKENIVMNSPNEG--------------LVIPPMFWHEMYDFS 100
Query: 121 MNTEVIYKVTDFYSVEHDSGVAWQD 145
+ ++ +DFY E D + D
Sbjct: 101 SDCVLMVLASDFYD-ESDYIRDYND 124
>gi|15678601|ref|NP_275716.1| hypothetical protein MTH573 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2621650|gb|AAB85079.1| unknown [Methanothermobacter thermautotrophicus str. Delta H]
Length = 83
Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKL 29
I+ V I + F D RG+ +
Sbjct: 29 IDGVVINDLKMFSDERGFLMELLRLDD 55
>gi|310641914|ref|YP_003946672.1| bicupin, oxalate decarboxylase family [Paenibacillus polymyxa SC2]
gi|309246864|gb|ADO56431.1| Bicupin, oxalate decarboxylase family [Paenibacillus polymyxa SC2]
Length = 397
Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 12/80 (15%)
Query: 47 SFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQI 106
S G +R LH+ + QA+ + G AVD G + G
Sbjct: 91 SLTPGGVRELHW----HQQAEWSYMLLGSARITAVDQD------GR--NFIADVGPGDLW 138
Query: 107 YIPTGFAHGFMTLEMNTEVI 126
Y P G H LE E +
Sbjct: 139 YFPPGIPHSIQGLEEGCEFL 158
>gi|91794006|ref|YP_563657.1| hypothetical protein Sden_2655 [Shewanella denitrificans OS217]
gi|91716008|gb|ABE55934.1| conserved hypothetical protein [Shewanella denitrificans OS217]
Length = 142
Score = 35.8 bits (82), Expect = 3.7, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 71 CIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117
G I + D R S +YG +V + S +N +++ +P G F
Sbjct: 62 VPVGSIRFVFYDDRYESNSYGEYVDVIASPDNYVRLTVPAGVWVAFQ 108
>gi|227326689|ref|ZP_03830713.1| WxcM domain-containing protein [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 130
Score = 35.4 bits (81), Expect = 4.0, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 8/70 (11%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M I R+++ + D RG K + + + F G RG H +
Sbjct: 1 MQI---RLIQLQTHGDERGALVALEQDK-----NIPFEIKRVYYLFKTKAGVRRGFHAHK 52
Query: 61 PPYAQAKLVR 70
A VR
Sbjct: 53 ALKQVAIAVR 62
>gi|297202067|ref|ZP_06919464.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197714293|gb|EDY58327.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length = 140
Score = 35.4 bits (81), Expect = 4.1, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 12/69 (17%)
Query: 29 LLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIA--GRIFDIAVDIRRN 86
++ G F IR +H++ P + ++ I GR ++ VD ++
Sbjct: 69 AFEDHGHSAEFP---------WHEIRSVHYKAGPSGKTLMMAVIHLDGRFYECVVDA-KS 118
Query: 87 SPTYGCWVS 95
T G W +
Sbjct: 119 RDTLGRWFA 127
>gi|312110831|ref|YP_003989147.1| bicupin, oxalate decarboxylase family [Geobacillus sp. Y4.1MC1]
gi|311215932|gb|ADP74536.1| bicupin, oxalate decarboxylase family [Geobacillus sp. Y4.1MC1]
Length = 308
Score = 35.4 bits (81), Expect = 4.2, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G +R LH+ + QA+ I GR AVD G ++SA G Y
Sbjct: 4 TPGGVRELHW----HRQAEWAYMILGRARITAVDQD------GRNFIADVSA--GDLWYF 51
Query: 109 PTGFAHGFMTLEMNTEVI 126
P G H LE E +
Sbjct: 52 PAGIPHSIQGLEEGCEFL 69
>gi|317486060|ref|ZP_07944913.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bilophila wadsworthia 3_1_6]
gi|316922687|gb|EFV43920.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Bilophila wadsworthia 3_1_6]
Length = 148
Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 5/107 (4%)
Query: 48 FDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEIS-ANNGLQI 106
+ G ++ Q + G++ + D R SPT G + + + +N +
Sbjct: 45 VEPGCVKAWKCHTR---QTQRFAVPVGQLKIVLYDDRPESPTRGRIMEVLLGRPDNYALL 101
Query: 107 YIPTGFAHGFMTLEMNTEVIYKVTD-FYSVEHDSGVAWQDKSIDITW 152
IP +GF VI D + + + I W
Sbjct: 102 QIPPRVWYGFTAAGGVPAVICNCPDIPHDPAEGLRKDFDSRDIPYHW 148
>gi|302894929|ref|XP_003046345.1| hypothetical protein NECHADRAFT_90684 [Nectria haematococca mpVI
77-13-4]
gi|256727272|gb|EEU40632.1| hypothetical protein NECHADRAFT_90684 [Nectria haematococca mpVI
77-13-4]
Length = 347
Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 12/77 (15%)
Query: 50 CGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIP 109
G IR LH+ R A+ +V G + AVD G + + N G Y P
Sbjct: 115 KGAIRELHWHRV--AEWGIVY--EGSVLVSAVDEN------GRYQEEVL--NYGDIWYFP 162
Query: 110 TGFAHGFMTLEMNTEVI 126
G AH L E +
Sbjct: 163 KGAAHTIQGLADENEYL 179
>gi|56962612|ref|YP_174338.1| oxalate decarboxylase [Bacillus clausii KSM-K16]
gi|56908850|dbj|BAD63377.1| oxalate decarboxylase [Bacillus clausii KSM-K16]
Length = 394
Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 12/80 (15%)
Query: 47 SFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQI 106
S G +R LH+ + QA+ + G AVD G + G
Sbjct: 95 SLTPGGVRELHW----HKQAEWSYMLLGHARITAVDQN------GR--NFIADVGPGDLW 142
Query: 107 YIPTGFAHGFMTLEMNTEVI 126
Y P G H L+ E +
Sbjct: 143 YFPPGIPHSIQGLDDGCEFL 162
>gi|253574796|ref|ZP_04852136.1| bicupin [Paenibacillus sp. oral taxon 786 str. D14]
gi|251845842|gb|EES73850.1| bicupin [Paenibacillus sp. oral taxon 786 str. D14]
Length = 406
Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G +R LH+ + QA+ I+GR AVD G ++ G Y
Sbjct: 104 TPGGVRELHW----HQQAEWSFMISGRARITAVDQD------GRNFIADMG--VGDLWYF 151
Query: 109 PTGFAHGFMTLEMNTEVI 126
P G H LE E +
Sbjct: 152 PPGIPHSIQGLEEGCEFL 169
>gi|253583773|ref|ZP_04860971.1| NAD-dependent epimerase/dehydratase [Fusobacterium varium ATCC
27725]
gi|251834345|gb|EES62908.1| NAD-dependent epimerase/dehydratase [Fusobacterium varium ATCC
27725]
Length = 368
Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats.
Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 18/105 (17%)
Query: 10 KTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLV 69
+ + +D+RG F + Q + S S G RG H+ +
Sbjct: 250 ELTEHKDNRGAFVEILR---------TIDSGQFSISTS-KPGITRGNHYHNTKNEKFL-- 297
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114
I G +I + + +S + IP G+ H
Sbjct: 298 -VIKGEAIIRFRNIYSD-----KVIEYPVSDKKLEVVDIPVGYTH 336
>gi|150003278|ref|YP_001298022.1| putative epimerase/dehydratase, involved in capsular polysaccharide
biosynthesis [Bacteroides vulgatus ATCC 8482]
gi|150004105|ref|YP_001298849.1| putative epimerase/dehydratase [Bacteroides vulgatus ATCC 8482]
gi|160890130|ref|ZP_02071133.1| hypothetical protein BACUNI_02570 [Bacteroides uniformis ATCC 8492]
gi|167764606|ref|ZP_02436727.1| hypothetical protein BACSTE_02996 [Bacteroides stercoris ATCC
43183]
gi|294775949|ref|ZP_06741445.1| NAD-binding protein [Bacteroides vulgatus PC510]
gi|149931702|gb|ABR38400.1| putative epimerase/dehydratase, involved in capsular polysaccharide
biosynthesis [Bacteroides vulgatus ATCC 8482]
gi|149932529|gb|ABR39227.1| putative epimerase/dehydratase [Bacteroides vulgatus ATCC 8482]
gi|156860518|gb|EDO53949.1| hypothetical protein BACUNI_02570 [Bacteroides uniformis ATCC 8492]
gi|167697275|gb|EDS13854.1| hypothetical protein BACSTE_02996 [Bacteroides stercoris ATCC
43183]
gi|294450087|gb|EFG18591.1| NAD-binding protein [Bacteroides vulgatus PC510]
Length = 384
Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 20/122 (16%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++ + + V N S G +G H+ + +V G
Sbjct: 269 DERGSFTEFIRTADRGQ-------VAVNIS---KPGITKGEHWHHTKVEKFVVVS-GHGL 317
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK--VTDFY 133
I VD V+ E+S + + G+ H + L ++ + +
Sbjct: 318 IQMRKVDSDE-------VVNFEVSGDKIEVVETIPGYTHNIVNLSETENLVTLIWCNECF 370
Query: 134 SV 135
Sbjct: 371 DP 372
>gi|154491599|ref|ZP_02031225.1| hypothetical protein PARMER_01210 [Parabacteroides merdae ATCC
43184]
gi|154088400|gb|EDN87445.1| hypothetical protein PARMER_01210 [Parabacteroides merdae ATCC
43184]
Length = 384
Score = 35.0 bits (80), Expect = 5.0, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 20/122 (16%)
Query: 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGR 75
D RG F++ + + V N S G +G H+ + +V G
Sbjct: 269 DERGSFTEFIRTADRGQ-------VAVNIS---KPGITKGEHWHHTKVEKFVVVS-GHGL 317
Query: 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK--VTDFY 133
I VD V+ E+S + + G+ H + L ++ + +
Sbjct: 318 IQMRKVDSDE-------VVNFEVSGDKIEVVETIPGYTHNIVNLSETENLVTLIWCNECF 370
Query: 134 SV 135
Sbjct: 371 DP 372
>gi|238791478|ref|ZP_04635116.1| NDP-hexose isomerase [Yersinia intermedia ATCC 29909]
gi|238729094|gb|EEQ20610.1| NDP-hexose isomerase [Yersinia intermedia ATCC 29909]
Length = 134
Score = 35.0 bits (80), Expect = 5.1, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 39/134 (29%), Gaps = 18/134 (13%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPY 63
V++++ +K D RG L+E + + + F RG H
Sbjct: 2 DVKLIQLQKHGDERG------QLIALEETKNIPFSIKRVYYMFETINDVHRGFHAHYKLQ 55
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
A VR G I D + + + N + I H +
Sbjct: 56 QLAIPVR---GACRIILDDGFEK-------IEVYLD-NPAQGLAIEPMIWHEMYDFSDDC 104
Query: 124 EVIYKVTDFYSVEH 137
++ DFY
Sbjct: 105 VLMVLADDFYDEAD 118
>gi|302881180|ref|XP_003039509.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256720359|gb|EEU33796.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 467
Score = 35.0 bits (80), Expect = 5.2, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 15/102 (14%)
Query: 26 SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRR 85
++ELG N D G IR LH+ + +A+ + G + A+D
Sbjct: 129 RQTTVRELGTSVELAGVN--MRLDHGVIRELHW----HKEAEWAYVLDGEVRVTALDYEG 182
Query: 86 NSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN-TEVI 126
+ G Y P+G H L N TE +
Sbjct: 183 GN--------FIDDLKKGDLWYFPSGIPHSLQGLSPNGTEFL 216
>gi|167565662|ref|ZP_02358578.1| cupin family protein [Burkholderia oklahomensis EO147]
gi|167572767|ref|ZP_02365641.1| cupin family protein [Burkholderia oklahomensis C6786]
Length = 418
Score = 35.0 bits (80), Expect = 5.4, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 24/118 (20%)
Query: 21 FSQTYS--SKLLKELGLQDVFVQDNHSFSFD---------CGTIRGLHFQRPPYAQAKLV 69
F +++ K +++ G QD+ + S G IR +H+ + QA+
Sbjct: 81 FWASFNNAHKRIQDGGWAREVTQDDFAISETISGVNMRLTRGGIREMHW----HQQAEWA 136
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL-EMNTEVI 126
+ GR +D P+ G Y P G H L E +
Sbjct: 137 FMLDGRCRITVLD-EEGRPS-------VQDVKAGDLWYFPPGLPHSLQGLGVDGAEFL 186
>gi|299536136|ref|ZP_07049450.1| oxalate decarboxylase oxdD [Lysinibacillus fusiformis ZC1]
gi|298728411|gb|EFI68972.1| oxalate decarboxylase oxdD [Lysinibacillus fusiformis ZC1]
Length = 394
Score = 35.0 bits (80), Expect = 5.6, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 12/80 (15%)
Query: 47 SFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQI 106
S G +R LH+ + QA+ + G AVD N + G
Sbjct: 90 SLAPGGVRELHW----HQQAEWSYMLLGHARITAVDQ--NGCNF------IADVGPGDLW 137
Query: 107 YIPTGFAHGFMTLEMNTEVI 126
Y P G H LE E +
Sbjct: 138 YFPPGIPHSIQGLEDGCEFL 157
>gi|227113145|ref|ZP_03826801.1| WxcM domain-containing protein [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 135
Score = 35.0 bits (80), Expect = 5.6, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 8/70 (11%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M I R+++ + D RG K + + + F G RGLH +
Sbjct: 1 MQI---RLIQLQTHGDDRGALVALEQDK-----NIPFEIKRVYYLFKTKEGVRRGLHAHK 52
Query: 61 PPYAQAKLVR 70
A VR
Sbjct: 53 ALKQVAIAVR 62
>gi|302925149|ref|XP_003054040.1| hypothetical protein NECHADRAFT_75785 [Nectria haematococca mpVI
77-13-4]
gi|256734981|gb|EEU48327.1| hypothetical protein NECHADRAFT_75785 [Nectria haematococca mpVI
77-13-4]
Length = 240
Score = 35.0 bits (80), Expect = 5.8, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 15/98 (15%)
Query: 57 HFQRPPYAQAKLVRCIAGR--IFDIAVDI--RRNSPTYGC-WV--SLEISANNGLQIYIP 109
HF + + ++G I D TYG W +E+ A G IP
Sbjct: 67 HFHSKAHE---CMAVLSGTATIRFGVADTSEDLEENTYGSAWEEGGVELQAEAGDVFIIP 123
Query: 110 TGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKS 147
G AH ++ + G+ D
Sbjct: 124 AGVAHKTYDVKPDEGFKLLT-----PGGGHGIEADDPR 156
>gi|311277353|ref|YP_003939584.1| Radical SAM domain-containing protein [Enterobacter cloacae SCF1]
gi|308746548|gb|ADO46300.1| Radical SAM domain protein [Enterobacter cloacae SCF1]
Length = 374
Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 12/73 (16%)
Query: 68 LVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127
VR GR++ D T G W + H F LE N +V Y
Sbjct: 218 WVREDVGRVYVQLFD-----STLGVWSGY-----PAQMCSLGETCGHAF-ALEANGDV-Y 265
Query: 128 KVTDFYSVEHDSG 140
+ + + EH G
Sbjct: 266 QCDHYVTPEHRLG 278
>gi|123966532|ref|YP_001011613.1| hypothetical protein P9515_12991 [Prochlorococcus marinus str. MIT
9515]
gi|123200898|gb|ABM72506.1| Hypothetical protein P9515_12991 [Prochlorococcus marinus str. MIT
9515]
Length = 151
Score = 35.0 bits (80), Expect = 6.0, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 18/95 (18%)
Query: 43 NHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISAN- 101
N +F H + P AQ V I+G++ D+ N I+ +
Sbjct: 63 NQTFKPHRHV---FHDRNMPMAQESWV-VISGKVKVFHYDLDDN----------IINESI 108
Query: 102 --NGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134
G G H ++ LE T V T Y
Sbjct: 109 LLPGDCTITYRG-GHNYLALEDKTVVYEIKTGPYH 142
>gi|238760639|ref|ZP_04621766.1| NDP-hexose isomerase [Yersinia aldovae ATCC 35236]
gi|238701150|gb|EEP93740.1| NDP-hexose isomerase [Yersinia aldovae ATCC 35236]
Length = 134
Score = 35.0 bits (80), Expect = 6.0, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 5 PVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPY 63
V++++ +K D RG L+E + + + F RG H
Sbjct: 2 DVKLIQLQKHGDERG------QLVALEETKNIPFSIKRVYYMFETINDVHRGFHAHYKLQ 55
Query: 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123
A VR G I D + + + N + I H +
Sbjct: 56 QLAIPVR---GACRIILDDGFEK-------IEVYLD-NPAQGLAIEPMIWHEMYDFSDDC 104
Query: 124 EVIYKVTDFYS 134
++ DFY
Sbjct: 105 VLMVLADDFYD 115
>gi|256825670|ref|YP_003149630.1| nucleoside-diphosphate-sugar epimerase [Kytococcus sedentarius DSM
20547]
gi|256689063|gb|ACV06865.1| nucleoside-diphosphate-sugar epimerase [Kytococcus sedentarius DSM
20547]
Length = 381
Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 18/130 (13%)
Query: 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKL 68
++ D RG+F +T ++ G Q Q + S + G RG H+ ++ +
Sbjct: 250 VQLTPHADDRGFFVET-----VRCAGGQG---QSSISTTV-PGITRGEHYHL---SKIER 297
Query: 69 VRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI-Y 127
+ G + + + +++ + + +P G+ H + + +
Sbjct: 298 FAVVQGTGRMSLRKMFTD-----EVIDFDVTGDQTAAVDMPVGWVHNITNTGDDILITQF 352
Query: 128 KVTDFYSVEH 137
V +F+ E+
Sbjct: 353 WVHEFFDPEN 362
>gi|255955843|ref|XP_002568674.1| Pc21g16710 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590385|emb|CAP96568.1| Pc21g16710 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 224
Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 19/99 (19%)
Query: 57 HFQRPPYAQAKLVRCIAGR------IFDIAVDIRRNSPTYGC-WV--SLEISANNGLQIY 107
H+ + + ++G + D + D+ N T G W +E+ A G
Sbjct: 67 HYHSKAHE---CMAVLSGTAKIRFGVADTSDDLFPN--TRGSSWEEGGVELEAEAGDVFI 121
Query: 108 IPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDK 146
IP G AH + E G+ +D
Sbjct: 122 IPAGVAHKTYDTKPEAEFKLLT-----PGTGHGIEAEDP 155
>gi|315648670|ref|ZP_07901766.1| bicupin, oxalate decarboxylase family protein [Paenibacillus vortex
V453]
gi|315275872|gb|EFU39223.1| bicupin, oxalate decarboxylase family protein [Paenibacillus vortex
V453]
Length = 397
Score = 34.6 bits (79), Expect = 7.0, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 12/80 (15%)
Query: 47 SFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQI 106
S G +R LH+ + QA+ I G +VD G + G
Sbjct: 93 SLTPGGVRELHW----HQQAEWAYMIWGSARITSVDQN------GR--NFIADVGPGDLW 140
Query: 107 YIPTGFAHGFMTLEMNTEVI 126
Y P G H LE E +
Sbjct: 141 YFPAGLPHSIQGLEEGCEFL 160
>gi|110678349|ref|YP_681356.1| nodulation protein N-like protein [Roseobacter denitrificans OCh
114]
gi|109454465|gb|ABG30670.1| nodulation protein N-like protein [Roseobacter denitrificans OCh
114]
Length = 149
Score = 34.6 bits (79), Expect = 7.2, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 62 PYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121
P +K V+ RI A D+ + W + + + AHGF+TL M
Sbjct: 15 PLGTSKWVQISQARIDAFA-DLTED------WQPIHLDPDAAQSAGFAGTVAHGFLTLSM 67
Query: 122 NTEVIYKV 129
+ + Y V
Sbjct: 68 LSAMSYDV 75
>gi|308174043|ref|YP_003920748.1| OxdC1 [Bacillus amyloliquefaciens DSM 7]
gi|307606907|emb|CBI43278.1| OxdC1 [Bacillus amyloliquefaciens DSM 7]
gi|328552831|gb|AEB23323.1| OxdC1 [Bacillus amyloliquefaciens TA208]
gi|328912373|gb|AEB63969.1| oxalate decarboxylase [Bacillus amyloliquefaciens LL3]
Length = 391
Score = 34.6 bits (79), Expect = 7.3, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G +R LH+ + +A+ I+G + AVD G +S G Y
Sbjct: 93 KPGAVRELHW----HKEAEWGYVISGEVRLTAVDQN------GRNFIDNVSE--GDLWYF 140
Query: 109 PTGFAHGFMTLEMNTEVI 126
P+G H +E +E +
Sbjct: 141 PSGIPHSIQGMEQGSEFL 158
>gi|39969283|ref|XP_366032.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
gi|149211107|ref|XP_001522928.1| hypothetical protein MGCH7_ch7g1016 [Magnaporthe oryzae 70-15]
gi|86196971|gb|EAQ71609.1| hypothetical protein MGCH7_ch7g1016 [Magnaporthe oryzae 70-15]
gi|145012016|gb|EDJ96672.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
Length = 486
Score = 34.6 bits (79), Expect = 7.5, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 15/102 (14%)
Query: 26 SSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRR 85
++ELG N G R LH+ + +A+ + G + +D
Sbjct: 139 RQTTVRELGTSSELASVN--MRLGKGVYRELHW----HKEAEWAYVLDGEVRITGIDYEG 192
Query: 86 NSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN-TEVI 126
+ G Y P+G H L N TE +
Sbjct: 193 GN--------FVDDLKAGDLWYFPSGVPHSLQGLSENGTEFL 226
>gi|154686499|ref|YP_001421660.1| OxdC1 [Bacillus amyloliquefaciens FZB42]
gi|154352350|gb|ABS74429.1| OxdC1 [Bacillus amyloliquefaciens FZB42]
Length = 391
Score = 34.6 bits (79), Expect = 7.6, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G +R LH+ + +A+ I G + AVD G +S G Y
Sbjct: 93 KPGAVRELHW----HKEAEWGYVINGGVRLTAVDQN------GRNFIDNVSE--GDLWYF 140
Query: 109 PTGFAHGFMTLEMNTEVI 126
P+G H LE +E +
Sbjct: 141 PSGIPHSIQGLEQGSEFL 158
>gi|217972660|ref|YP_002357411.1| NAD-dependent epimerase/dehydratase [Shewanella baltica OS223]
gi|217497795|gb|ACK45988.1| NAD-dependent epimerase/dehydratase [Shewanella baltica OS223]
Length = 367
Score = 34.6 bits (79), Expect = 7.7, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVR 70
+ D RG FS+ +K E G F + G RG H+ + +VR
Sbjct: 253 YGDERGVFSEMLKTK---EAGQFSFF-------TAHPGITRGGHYHHTKNEKFLVVR 299
>gi|306820756|ref|ZP_07454382.1| spore coat polysaccharide synthesis [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551205|gb|EFM39170.1| spore coat polysaccharide synthesis [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 119
Score = 34.6 bits (79), Expect = 7.7, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 41/126 (32%), Gaps = 32/126 (25%)
Query: 6 VRILKTR-KFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYA 64
V I+ FED RG Q ++ F Q N + G IRG H+
Sbjct: 3 VEIINPDFIFEDDRGSLVQL----------VRSGFNQVNV-ITSKSGVIRGGHYHNKNEE 51
Query: 65 QAKLVRCIAGRIFDIAVDIRRNS----PTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE 120
I G + +D++++S + +G IP H F LE
Sbjct: 52 ---AFYIINGSLK---LDLKKDSIKETHIF----------KSGDMFKIPKLVTHSFEFLE 95
Query: 121 MNTEVI 126
V
Sbjct: 96 DTLLVS 101
>gi|83717411|ref|YP_439622.1| cupin family protein [Burkholderia thailandensis E264]
gi|167578053|ref|ZP_02370927.1| cupin family protein [Burkholderia thailandensis TXDOH]
gi|167616184|ref|ZP_02384819.1| cupin family protein [Burkholderia thailandensis Bt4]
gi|257142761|ref|ZP_05591023.1| cupin family protein [Burkholderia thailandensis E264]
gi|83651236|gb|ABC35300.1| cupin family protein [Burkholderia thailandensis E264]
Length = 418
Score = 34.6 bits (79), Expect = 7.8, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 24/118 (20%)
Query: 21 FSQTYS--SKLLKELGLQDVFVQDNHSFSFD---------CGTIRGLHFQRPPYAQAKLV 69
F +++ K ++ G QD+ + S G IR +H+ + QA+
Sbjct: 81 FWASFNNAHKRIQNGGWAREVTQDDFAISETISGVNMRLTRGGIREMHW----HQQAEWA 136
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTL-EMNTEVI 126
+ GR +D P+ G Y P G H L E +
Sbjct: 137 FMLDGRCRITVLD-EEGRPS-------VQDVKAGDLWYFPPGLPHSLQGLGVDGAEFL 186
>gi|253687693|ref|YP_003016883.1| WxcM domain protein domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251754271|gb|ACT12347.1| WxcM domain protein domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 131
Score = 34.2 bits (78), Expect = 8.6, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 8/70 (11%)
Query: 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQR 60
M I R+++ + D RG K + + + F G RG H +
Sbjct: 1 MQI---RLIQLQTHGDERGALVALEQDK-----NIPFEIKRVYYLFKTKEGVRRGFHAHK 52
Query: 61 PPYAQAKLVR 70
A VR
Sbjct: 53 ALKQVAIAVR 62
>gi|217978815|ref|YP_002362962.1| bicupin, oxalate decarboxylase family [Methylocella silvestris BL2]
gi|217504191|gb|ACK51600.1| bicupin, oxalate decarboxylase family [Methylocella silvestris BL2]
Length = 418
Score = 34.2 bits (78), Expect = 9.0, Method: Composition-based stats.
Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 23/113 (20%)
Query: 21 FSQTYS--SKLLKELGLQDVFVQDNHSFSFD---------CGTIRGLHFQRPPYAQAKLV 69
F T++ + ++ G Q++ S G IR +H+ + A+
Sbjct: 81 FWATFNNAQRRIQNGGWARQVTQESFPISTTISGVDMRLAAGAIREMHWHQA----AEWA 136
Query: 70 RCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122
G +D P V+ G Y P G+ H L +
Sbjct: 137 FVTYGSCRVTVLD-----PQGRASVA---DVKEGDLWYFPAGYPHSLQGLGPD 181
>gi|169828530|ref|YP_001698688.1| oxalate decarboxylase oxdD [Lysinibacillus sphaericus C3-41]
gi|168993018|gb|ACA40558.1| Oxalate decarboxylase oxdD [Lysinibacillus sphaericus C3-41]
Length = 364
Score = 34.2 bits (78), Expect = 9.1, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 26/80 (32%), Gaps = 12/80 (15%)
Query: 47 SFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQI 106
S G +R LH+ + QA+ + G AVD N + G
Sbjct: 60 SLTPGGVRELHW----HQQAEWSYMLLGHARITAVDQ--NGCNF------IADVGPGDLW 107
Query: 107 YIPTGFAHGFMTLEMNTEVI 126
Y P G H L E +
Sbjct: 108 YFPPGIPHSIQGLADGCEFL 127
>gi|321312874|ref|YP_004205161.1| oxalate decarboxylase [Bacillus subtilis BSn5]
gi|320019148|gb|ADV94134.1| oxalate decarboxylase [Bacillus subtilis BSn5]
Length = 385
Score = 34.2 bits (78), Expect = 9.2, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G IR LH+ + +A+ I G VD + S G Y
Sbjct: 87 KPGAIRELHW----HKEAEWAYMIYGSARVTIVDEKGRS--------FIDDVGEGDLWYF 134
Query: 109 PTGFAHGFMTLEMNTEVI 126
P+G H L+ E +
Sbjct: 135 PSGLPHSIQALDEGAEFL 152
>gi|302886288|ref|XP_003042034.1| hypothetical protein NECHADRAFT_86955 [Nectria haematococca mpVI
77-13-4]
gi|256722942|gb|EEU36321.1| hypothetical protein NECHADRAFT_86955 [Nectria haematococca mpVI
77-13-4]
Length = 468
Score = 34.2 bits (78), Expect = 9.2, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 13/77 (16%)
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPT 110
G IR LH+ + +A+ + G + A+D + G Y P+
Sbjct: 153 GVIRELHW----HKEAEWAYVLDGEVRVTALDYEGGN--------FIDDLKKGDLWYFPS 200
Query: 111 GFAHGFMTLEMN-TEVI 126
G H L N TE +
Sbjct: 201 GVPHSLQGLSENGTEFL 217
>gi|167463489|ref|ZP_02328578.1| YoaN1 [Paenibacillus larvae subsp. larvae BRL-230010]
gi|322383181|ref|ZP_08057003.1| oxalate decarboxylase-like protein [Paenibacillus larvae subsp.
larvae B-3650]
gi|321152724|gb|EFX45355.1| oxalate decarboxylase-like protein [Paenibacillus larvae subsp.
larvae B-3650]
Length = 390
Score = 34.2 bits (78), Expect = 9.4, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 12/78 (15%)
Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYI 108
G +R LH+ + QA+ I+G AVD G + G Y
Sbjct: 93 TPGGVRELHW----HKQAEWAFMISGCARVTAVDQN------GR--NFIADVEMGDLWYF 140
Query: 109 PTGFAHGFMTLEMNTEVI 126
P G H L+ E +
Sbjct: 141 PPGIPHSIQGLKEGCEFL 158
>gi|302684797|ref|XP_003032079.1| hypothetical protein SCHCODRAFT_257097 [Schizophyllum commune H4-8]
gi|300105772|gb|EFI97176.1| hypothetical protein SCHCODRAFT_257097 [Schizophyllum commune H4-8]
Length = 486
Score = 34.2 bits (78), Expect = 9.4, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPT 110
G IR LH+ ++ A+ V +AG AVD + + + +A G + P+
Sbjct: 202 GAIRELHW----HSIAEWVYVLAGETQISAVDQKG-----RNYFA---TAKTGDLWFFPS 249
Query: 111 GFAHGFMTLEM 121
G H
Sbjct: 250 GVGHHLQATGD 260
>gi|297242542|gb|ADI24942.1| unknown [Penicillium aethiopicum]
Length = 224
Score = 34.2 bits (78), Expect = 9.5, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 5/52 (9%)
Query: 95 SLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDK 146
+E+ A G IP G AH + E G+ +D
Sbjct: 109 GVELEAEAGDVFIIPAGVAHKTYDTKPEAEFKLLT-----PGTGHGIEAEDP 155
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.315 0.178 0.644
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,213,515,778
Number of Sequences: 14124377
Number of extensions: 292412692
Number of successful extensions: 455870
Number of sequences better than 10.0: 2413
Number of HSP's better than 10.0 without gapping: 4063
Number of HSP's successfully gapped in prelim test: 466
Number of HSP's that attempted gapping in prelim test: 444284
Number of HSP's gapped (non-prelim): 4583
length of query: 198
length of database: 4,842,793,630
effective HSP length: 132
effective length of query: 66
effective length of database: 2,978,375,866
effective search space: 196572807156
effective search space used: 196572807156
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 78 (34.2 bits)