HHsearch alignment for GI: 254780920 and conserved domain: COG1088
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=542.88 Aligned_cols=326 Identities=60% Similarity=1.067 Sum_probs=310.8
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCC-CEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf 9489976788277999999998689-879999478876585677762037974999763889999999986227871785
Q gi|254780920|r 1 MRLIVTGGAGFIGSALCRYLVNDLK-IQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDRECIRSALKEFQPDAIVN 79 (358)
Q Consensus 1 MkILItG~tGfIGs~l~~~Ll~~~~-~~V~~~d~~~~~~~~~~~~~~~~~~~v~~i~~Di~d~~~l~~~~~~~~~d~ViH 79 (358)
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh 80 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH 80 (340)
T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 93799657515778999999960997528997523315778788864069971588545547999999997448875998
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCC
Q ss_conf 1234332222222222222222222024788865123221124784278630554311222222--22222222222222
Q gi|254780920|r 80 FAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQDKKDQFRFLQISTDEVYGSLDKG--LFSEDMPYNPSSPY 157 (358)
Q Consensus 80 lAa~~~~~~~~~~p~~~~~~Nv~gt~nil~~~~~~~~~~~~~~~~~~~~v~~SS~~vYg~~~~~--~~~E~~~~~p~s~Y 157 (358)
T Consensus 81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~--------~frf~HISTDEVYG~l~~~~~~FtE~tp~~PsSPY 152 (340)
T COG1088 81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWG--------KFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPY 152 (340)
T ss_pred ECHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCC--------CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1100133223357055340002879999999998466--------62079941521025666788875447999999974
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 33322100000012333222222222222233322222222222222222222222222233221133222200000001
Q gi|254780920|r 158 SATKASSDYLVLAWGHTYGIPVLLSNCSNNYGPYHFPEKLIPLAITRMIEGSHVFLYGDGQNVRDWLYVEDHVRALYLVL 237 (358)
Q Consensus 158 g~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~i~g~g~~~Rdfi~v~D~a~~i~~~~ 237 (358)
T Consensus 153 SASKAasD~lVray~~TYglp~~ItrcSNNYGPyqfpEKlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai~~Vl 232 (340)
T COG1088 153 SASKAASDLLVRAYVRTYGLPATITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLVL 232 (340)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCEEEEEEEHHHHHHHHHHH
T ss_conf 04455678999999987199669844777768876715566799999973999854369854020587175788999999
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCEECCCHHHHHHHHCCCCCCCHHHHH
Q ss_conf 22222221113578642026889999886034265556864302334889986530031718999981896610899999
Q gi|254780920|r 238 KKGRIGERYNIGGNNERKNIDIVFEIGFLLDALIPKSYSHTELIRFIEDRPGHDRRYAIDSSKIKSEIGWFPQENMESGL 317 (358)
Q Consensus 238 ~~~~~~~~fNigs~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~K~~~~Lgw~p~~~l~egi 317 (358)
T Consensus 233 ~kg~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~---~~~li~~V~DRpGHD~RYaid~~Ki~~eLgW~P~~~fe~Gl 309 (340)
T COG1088 233 TKGKIGETYNIGGGNERTNLEVVKTICELLGKDKPD---YRDLITFVEDRPGHDRRYAIDASKIKRELGWRPQETFETGL 309 (340)
T ss_pred HCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCC---HHHHEEECCCCCCCCCCEEECHHHHHHHCCCCCCCCHHHHH
T ss_conf 568677668717875200799999999986766511---04124761678997501010667776542988678888899
Q ss_pred HHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999998867865532311
Q gi|254780920|r 318 NKTVCWYLDNNWWWRPLYKE 337 (358)
Q Consensus 318 ~~~i~w~~~n~~~~~~~~~~ 337 (358)
T Consensus 310 rkTv~WY~~N~~Ww~~l~~~ 329 (340)
T COG1088 310 RKTVDWYLDNEWWWEPLKDG 329 (340)
T ss_pred HHHHHHHHHHHHHHHHHHCC
T ss_conf 99999998557777764265