HHsearch alignment for GI: 254780920 and conserved domain: COG1090
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].
Probab=99.95 E-value=1.1e-28 Score=194.69 Aligned_cols=280 Identities=22% Similarity=0.311 Sum_probs=191.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECC
Q ss_conf 89976788277999999998689879999478876585677762037974999763889999999986227871785123
Q gi|254780920|r 3 LIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDRECIRSALKEFQPDAIVNFAA 82 (358)
Q Consensus 3 ILItG~tGfIGs~l~~~Ll~~~~~~V~~~d~~~~~~~~~~~~~~~~~~~v~~i~~Di~d~~~l~~~~~~~~~d~ViHlAa 82 (358)
T Consensus 1 IliTGgTGlIG~~L~~~L~-~~gh~v~iltR~~~~~~~~------~~~~v~-------~~~~~~~~~~~-~~DavINLAG 65 (297)
T COG1090 1 ILITGGTGLIGRALTARLR-KGGHQVTILTRRPPKASQN------LHPNVT-------LWEGLADALTL-GIDAVINLAG 65 (297)
T ss_pred CEEECCCCCHHHHHHHHHH-HCCCEEEEEECCCCCHHHH------CCCCCC-------CCCHHHHCCCC-CCCEEEECCC
T ss_conf 9573566501689999998-4898699997478502332------476533-------43012440367-8778998889
Q ss_pred CCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43322222--2222222222222202478886512322112478427863055431122222222222222222222333
Q gi|254780920|r 83 ESHVDRSI--LGADEFITTNIIGTFILLEETRLWWSCLSQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSAT 160 (358)
Q Consensus 83 ~~~~~~~~--~~p~~~~~~Nv~gt~nil~~~~~~~~~~~~~~~~~~~~v~~SS~~vYg~~~~~~~~E~~~~~p~s~Yg~s 160 (358)
T Consensus 66 ~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~-------~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~g~------- 131 (297)
T COG1090 66 EPIAERRWTEKQKEEIRQSRINTTEKLVELIAA-------SETKPKVLISASAVGYYGHSGDRVVTEESPPGD------- 131 (297)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------CCCCCCEEEECCEEEEECCCCCEEEECCCCCCC-------
T ss_conf 815446578899999999776899999999985-------267980898524577755888646415788877-------
Q ss_pred CCCCEEEECCC------CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 22100000012------333222222222222233322-22222222222222222222222223322113322220000
Q gi|254780920|r 161 KASSDYLVLAW------GHTYGIPVLLSNCSNNYGPYH-FPEKLIPLAITRMIEGSHVFLYGDGQNVRDWLYVEDHVRAL 233 (358)
Q Consensus 161 K~~~E~~~~~~------~~~~~l~~~ilR~~~vyGp~~-~~~~~i~~~i~~~~~g~~~~i~g~g~~~Rdfi~v~D~a~~i 233 (358)
T Consensus 132 -~Fla~lc~~WE~~a~~a~~~gtRvvllRtGvVLs~~GGaL~~m~~~f--k~glGG~~---GsGrQ~~SWIhieD~v~~I 205 (297)
T COG1090 132 -DFLAQLCQDWEEEALQAQQLGTRVVLLRTGVVLSPDGGALGKMLPLF--KLGLGGKL---GSGRQWFSWIHIEDLVNAI 205 (297)
T ss_pred -CHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCHHHHCCHH--HHCCCCCC---CCCCCEEEEEEHHHHHHHH
T ss_conf -75999999999998666406846999988778617886034310135--52257715---8987303433299999999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCEECCC-----HHHHHHHHCCC
Q ss_conf 0001222222211135786420268899998860342655568643023348899865300317-----18999981896
Q gi|254780920|r 234 YLVLKKGRIGERYNIGGNNERKNIDIVFEIGFLLDALIPKSYSHTELIRFIEDRPGHDRRYAID-----SSKIKSEIGWF 308 (358)
Q Consensus 234 ~~~~~~~~~~~~fNigs~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~K~~~~Lgw~ 308 (358)
T Consensus 206 ~fll~~~~lsGp~N~taP~PV~~~~F~~al~r~l~RP~~~~vP~~~-~rl~---LGe~a~~lL~gQrvlP~kl~~-aGF~ 280 (297)
T COG1090 206 LFLLENEQLSGPFNLTAPNPVRNKEFAHALGRALHRPAILPVPSFA-LRLL---LGEMADLLLGGQRVLPKKLEA-AGFQ 280 (297)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHH-HHHH---HHHHHHHHHCCCHHHHHHHHH-CCCE
T ss_conf 9998475777751035898672899999999986799535693899-9998---522589886360344799987-7981
Q ss_pred CCC-CHHHHHHHHHH
Q ss_conf 610-89999999999
Q gi|254780920|r 309 PQE-NMESGLNKTVC 322 (358)
Q Consensus 309 p~~-~l~egi~~~i~ 322 (358)
T Consensus 281 F~y~dl~~AL~~il~ 295 (297)
T COG1090 281 FQYPDLEEALADILK 295 (297)
T ss_pred EECCCHHHHHHHHHH
T ss_conf 665779999999972