HHsearch alignment for GI: 254780920 and conserved domain: PRK11188
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional.
Probab=92.54 E-value=0.77 Score=24.42 Aligned_cols=70 Identities=26% Similarity=0.320 Sum_probs=46.5
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHC--CCEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH---CCCC
Q ss_conf 948997678827799999999868--98799994788765856777620379749997638899999999862---2787
Q gi|254780920|r 1 MRLIVTGGAGFIGSALCRYLVNDL--KIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDRECIRSALKE---FQPD 75 (358)
Q Consensus 1 MkILItG~tGfIGs~l~~~Ll~~~--~~~V~~~d~~~~~~~~~~~~~~~~~~~v~~i~~Di~d~~~l~~~~~~---~~~d 75 (358)
T Consensus 53 ~~VlDLGaA--PG~Ws-Qva~~~~~~~g~VigVDl~~----------~~pi~gv~~i~gDi~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 53 MTVVDLGAA--PGGWS-QYAVTQIGDKGRVIACDILP----------MDPIVGVDFLQGDFRDELVLKALLERVGDSKVD 119 (209)
T ss_pred CEEEEECCC--CCHHH-HHHHHHCCCCCEEEEEECCC----------CCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 989980689--97578-99999739997399986530----------453789676403445889999999985898730
Q ss_pred EEEEECCC
Q ss_conf 17851234
Q gi|254780920|r 76 AIVNFAAE 83 (358)
Q Consensus 76 ~ViHlAa~ 83 (358)
T Consensus 120 vVlSDmAP 127 (209)
T PRK11188 120 VVMSDMAP 127 (209)
T ss_pred EEECCCCC
T ss_conf 89666665