HHsearch alignment for GI: 254780920 and conserved domain: PRK11188

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional.
Probab=92.54  E-value=0.77  Score=24.42  Aligned_cols=70  Identities=26%  Similarity=0.320  Sum_probs=46.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHHC--CCEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH---CCCC
Q ss_conf             948997678827799999999868--98799994788765856777620379749997638899999999862---2787
Q gi|254780920|r    1 MRLIVTGGAGFIGSALCRYLVNDL--KIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDRECIRSALKE---FQPD   75 (358)
Q Consensus         1 MkILItG~tGfIGs~l~~~Ll~~~--~~~V~~~d~~~~~~~~~~~~~~~~~~~v~~i~~Di~d~~~l~~~~~~---~~~d   75 (358)
T Consensus        53 ~~VlDLGaA--PG~Ws-Qva~~~~~~~g~VigVDl~~----------~~pi~gv~~i~gDi~~~~~~~~i~~~~~~~~~D  119 (209)
T PRK11188         53 MTVVDLGAA--PGGWS-QYAVTQIGDKGRVIACDILP----------MDPIVGVDFLQGDFRDELVLKALLERVGDSKVD  119 (209)
T ss_pred             CEEEEECCC--CCHHH-HHHHHHCCCCCEEEEEECCC----------CCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCC
T ss_conf             989980689--97578-99999739997399986530----------453789676403445889999999985898730


Q ss_pred             EEEEECCC
Q ss_conf             17851234
Q gi|254780920|r   76 AIVNFAAE   83 (358)
Q Consensus        76 ~ViHlAa~   83 (358)
T Consensus       120 vVlSDmAP  127 (209)
T PRK11188        120 VVMSDMAP  127 (209)
T ss_pred             EEECCCCC
T ss_conf             89666665