HHsearch alignment for GI: 254780920 and conserved domain: TIGR01214

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=100.00  E-value=1.6e-43  Score=285.41  Aligned_cols=291  Identities=21%  Similarity=0.244  Sum_probs=242.9

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEC
Q ss_conf             48997678827799999999868987999947887658567776203797499976388999999998622787178512
Q gi|254780920|r    2 RLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDRECIRSALKEFQPDAIVNFA   81 (358)
Q Consensus         2 kILItG~tGfIGs~l~~~Ll~~~~~~V~~~d~~~~~~~~~~~~~~~~~~~v~~i~~Di~d~~~l~~~~~~~~~d~ViHlA   81 (358)
T Consensus         1 rilitGa~GQlG~~L~~~l~~-~g~~~~~~~~---~~~~~~--------~~~~~~~Dl~dP~~l~~~~r~~~Pd~vvntA   68 (317)
T TIGR01214         1 RILITGANGQLGRELVQQLSK-PGRVVVALTR---STRLKL--------AARWSQLDLTDPEALEELLRAIRPDAVVNTA   68 (317)
T ss_pred             CEEEECCCCHHHHHHHHHCCC-CCCEEEEECC---CCCCCH--------HHHHHHHCCCCHHHHHHHHHHHCCCEEEECC
T ss_conf             978873875679999997078-8827864368---777611--------3365440622468899999852875376230


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCC----CCCCCCCCCCCCCCCCCC
Q ss_conf             3433222222222222222222202478886512322112478427863055431122----222222222222222222
Q gi|254780920|r   82 AESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQDKKDQFRFLQISTDEVYGS----LDKGLFSEDMPYNPSSPY  157 (358)
Q Consensus        82 a~~~~~~~~~~p~~~~~~Nv~gt~nil~~~~~~~~~~~~~~~~~~~~v~~SS~~vYg~----~~~~~~~E~~~~~p~s~Y  157 (358)
T Consensus        69 AYT~VD~AE~~~~~AyavNa~A~~~lA~~A~~~G----------a~~vh~STDYVFDGdfGG~~~~PY~e~D~~nPlnvY  138 (317)
T TIGR01214        69 AYTDVDGAESDPEKAYAVNALAPQNLARAAARVG----------ARLVHISTDYVFDGDFGGEGKRPYREDDETNPLNVY  138 (317)
T ss_pred             HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC----------CEEEEEEECEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             1101000037777876574078999999998669----------159998634234475578886688764687984312


Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             333221000000123332222222222222333222-222222222222-222222222222332211332222000000
Q gi|254780920|r  158 SATKASSDYLVLAWGHTYGIPVLLSNCSNNYGPYHF-PEKLIPLAITRM-IEGSHVFLYGDGQNVRDWLYVEDHVRALYL  235 (358)
Q Consensus       158 g~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~-~~~~i~~~i~~~-~~g~~~~i~g~g~~~Rdfi~v~D~a~~i~~  235 (358)
T Consensus       139 G~SK~~GE~a~~~~~~~--e~~lIvRTsWlY~~~g~~g~NF~~tMlrLaG~~~~~l~vV~--DQ~GsPTy~~dLA~~~~~  214 (317)
T TIGR01214       139 GQSKLAGEQAVRAAGPD--ENALIVRTSWLYGAGGGSGRNFVKTMLRLAGKEREELRVVD--DQIGSPTYAKDLARAIAA  214 (317)
T ss_pred             CHHHHHHHHHHHHHCCC--CCEEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEE--CCCCCHHHHHHHHHHHHH
T ss_conf             11156899999983799--85788985213448998842179999985378998403785--576873589999999999


Q ss_pred             CCCCC--------CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-------CCCCCCCCCEEECCCCCCCCCEECCCHHH
Q ss_conf             01222--------2222111357864202688999988603426-------55568643023348899865300317189
Q gi|254780920|r  236 VLKKG--------RIGERYNIGGNNERKNIDIVFEIGFLLDALI-------PKSYSHTELIRFIEDRPGHDRRYAIDSSK  300 (358)
Q Consensus       236 ~~~~~--------~~~~~fNigs~~~~s~~e~~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~d~~K  300 (358)
T Consensus       215 ll~~~~Wdv~~~a~~~GvYH~~~~G~~SWyeFA~~If~~~~~~g~~~~~~~~v~Pis~~~yp~pA~RPa---yS~Ld~~~  291 (317)
T TIGR01214       215 LLERLNWDVEDAARARGVYHLANSGQVSWYEFAQAIFEVAGECGLLLKVPEEVKPISSKEYPTPARRPA---YSVLDNTK  291 (317)
T ss_pred             HHHHHCCCHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEECHHCCCCCCCCCC---CHHHHHHH
T ss_conf             997613340010136734677505431368899999999985471048720001011320778998864---30445689


Q ss_pred             HHHHHC---CCCCCCHHHHHHHHHH
Q ss_conf             999818---9661089999999999
Q gi|254780920|r  301 IKSEIG---WFPQENMESGLNKTVC  322 (358)
Q Consensus       301 ~~~~Lg---w~p~~~l~egi~~~i~  322 (358)
T Consensus       292 ~~~~~g~P~~~l-p~Wr~al~~~l~  315 (317)
T TIGR01214       292 LVKTLGKPLLVL-PDWREALRAVLK  315 (317)
T ss_pred             HHHHHCCCCCCC-CCHHHHHHHHHH
T ss_conf             999608666799-878999999974