HHsearch alignment for GI: 254780920 and conserved domain: TIGR01214
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=100.00 E-value=1.6e-43 Score=285.41 Aligned_cols=291 Identities=21% Similarity=0.244 Sum_probs=242.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEC
Q ss_conf 48997678827799999999868987999947887658567776203797499976388999999998622787178512
Q gi|254780920|r 2 RLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDRECIRSALKEFQPDAIVNFA 81 (358)
Q Consensus 2 kILItG~tGfIGs~l~~~Ll~~~~~~V~~~d~~~~~~~~~~~~~~~~~~~v~~i~~Di~d~~~l~~~~~~~~~d~ViHlA 81 (358)
T Consensus 1 rilitGa~GQlG~~L~~~l~~-~g~~~~~~~~---~~~~~~--------~~~~~~~Dl~dP~~l~~~~r~~~Pd~vvntA 68 (317)
T TIGR01214 1 RILITGANGQLGRELVQQLSK-PGRVVVALTR---STRLKL--------AARWSQLDLTDPEALEELLRAIRPDAVVNTA 68 (317)
T ss_pred CEEEECCCCHHHHHHHHHCCC-CCCEEEEECC---CCCCCH--------HHHHHHHCCCCHHHHHHHHHHHCCCEEEECC
T ss_conf 978873875679999997078-8827864368---777611--------3365440622468899999852875376230
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCC----CCCCCCCCCCCCCCCCCC
Q ss_conf 3433222222222222222222202478886512322112478427863055431122----222222222222222222
Q gi|254780920|r 82 AESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQDKKDQFRFLQISTDEVYGS----LDKGLFSEDMPYNPSSPY 157 (358)
Q Consensus 82 a~~~~~~~~~~p~~~~~~Nv~gt~nil~~~~~~~~~~~~~~~~~~~~v~~SS~~vYg~----~~~~~~~E~~~~~p~s~Y 157 (358)
T Consensus 69 AYT~VD~AE~~~~~AyavNa~A~~~lA~~A~~~G----------a~~vh~STDYVFDGdfGG~~~~PY~e~D~~nPlnvY 138 (317)
T TIGR01214 69 AYTDVDGAESDPEKAYAVNALAPQNLARAAARVG----------ARLVHISTDYVFDGDFGGEGKRPYREDDETNPLNVY 138 (317)
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC----------CEEEEEEECEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1101000037777876574078999999998669----------159998634234475578886688764687984312
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 333221000000123332222222222222333222-222222222222-222222222222332211332222000000
Q gi|254780920|r 158 SATKASSDYLVLAWGHTYGIPVLLSNCSNNYGPYHF-PEKLIPLAITRM-IEGSHVFLYGDGQNVRDWLYVEDHVRALYL 235 (358)
Q Consensus 158 g~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~-~~~~i~~~i~~~-~~g~~~~i~g~g~~~Rdfi~v~D~a~~i~~ 235 (358)
T Consensus 139 G~SK~~GE~a~~~~~~~--e~~lIvRTsWlY~~~g~~g~NF~~tMlrLaG~~~~~l~vV~--DQ~GsPTy~~dLA~~~~~ 214 (317)
T TIGR01214 139 GQSKLAGEQAVRAAGPD--ENALIVRTSWLYGAGGGSGRNFVKTMLRLAGKEREELRVVD--DQIGSPTYAKDLARAIAA 214 (317)
T ss_pred CHHHHHHHHHHHHHCCC--CCEEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEE--CCCCCHHHHHHHHHHHHH
T ss_conf 11156899999983799--85788985213448998842179999985378998403785--576873589999999999
Q ss_pred CCCCC--------CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-------CCCCCCCCCEEECCCCCCCCCEECCCHHH
Q ss_conf 01222--------2222111357864202688999988603426-------55568643023348899865300317189
Q gi|254780920|r 236 VLKKG--------RIGERYNIGGNNERKNIDIVFEIGFLLDALI-------PKSYSHTELIRFIEDRPGHDRRYAIDSSK 300 (358)
Q Consensus 236 ~~~~~--------~~~~~fNigs~~~~s~~e~~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~d~~K 300 (358)
T Consensus 215 ll~~~~Wdv~~~a~~~GvYH~~~~G~~SWyeFA~~If~~~~~~g~~~~~~~~v~Pis~~~yp~pA~RPa---yS~Ld~~~ 291 (317)
T TIGR01214 215 LLERLNWDVEDAARARGVYHLANSGQVSWYEFAQAIFEVAGECGLLLKVPEEVKPISSKEYPTPARRPA---YSVLDNTK 291 (317)
T ss_pred HHHHHCCCHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEECHHCCCCCCCCCC---CHHHHHHH
T ss_conf 997613340010136734677505431368899999999985471048720001011320778998864---30445689
Q ss_pred HHHHHC---CCCCCCHHHHHHHHHH
Q ss_conf 999818---9661089999999999
Q gi|254780920|r 301 IKSEIG---WFPQENMESGLNKTVC 322 (358)
Q Consensus 301 ~~~~Lg---w~p~~~l~egi~~~i~ 322 (358)
T Consensus 292 ~~~~~g~P~~~l-p~Wr~al~~~l~ 315 (317)
T TIGR01214 292 LVKTLGKPLLVL-PDWREALRAVLK 315 (317)
T ss_pred HHHHHCCCCCCC-CCHHHHHHHHHH
T ss_conf 999608666799-878999999974