HHsearch alignment for GI: 254780920 and conserved domain: TIGR01963
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase; InterPro: IPR011294 This entry represents a subfamily of the short chain dehydrogenases. Characterised members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polymers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.; GO: 0003858 3-hydroxybutyrate dehydrogenase activity.
Probab=98.80 E-value=3.7e-08 Score=69.15 Aligned_cols=228 Identities=21% Similarity=0.248 Sum_probs=145.0
Q ss_pred CE-EEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHH--HCCCCEEEEECCCCCHHHHHHHHHH----C-
Q ss_conf 94-89976788277999999998689879999478876585677762--0379749997638899999999862----2-
Q gi|254780920|r 1 MR-LIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEI--SQSNLFSFLQVDICDRECIRSALKE----F- 72 (358)
Q Consensus 1 Mk-ILItG~tGfIGs~l~~~Ll~~~~~~V~~~d~~~~~~~~~~~~~~--~~~~~v~~i~~Di~d~~~l~~~~~~----~- 72 (358)
T Consensus 1 ~ktalVTGaaSGIG~~iA~~LA~a-Ga~v~~~d~~~~~~~~~~~~~~~~~~G~~v~~~~~D~T~~~e~~~~~~~~~~~fG 79 (258)
T TIGR01963 1 GKTALVTGAASGIGLAIAKALAAA-GANVVVNDLGEADEGAEAAAKVATDAGGSVIYLVADVTKEEEIADMIQAVAAEFG 79 (258)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHC-CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 948999658716789999999872-9889984678878999999999996188357751478888999999999999856
Q ss_pred CCCEEEEECCCCCCCCCC----CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCE-EEEECCCCCCCCCCCCCCCCC
Q ss_conf 787178512343322222----222222222222220247888651232211247842-786305543112222222222
Q gi|254780920|r 73 QPDAIVNFAAESHVDRSI----LGADEFITTNIIGTFILLEETRLWWSCLSQDKKDQF-RFLQISTDEVYGSLDKGLFSE 147 (358)
Q Consensus 73 ~~d~ViHlAa~~~~~~~~----~~p~~~~~~Nv~gt~nil~~~~~~~~~~~~~~~~~~-~~v~~SS~~vYg~~~~~~~~E 147 (358)
T Consensus 80 ~~DiLVNNAG~QhVaPiEeFP~~~w~~iiav~LtsaF~t~raA-----lP~Mk~~gwGGRIiNIAS~H--GLvAS----- 147 (258)
T TIGR01963 80 GLDILVNNAGIQHVAPIEEFPPEKWDRIIAVMLTSAFHTIRAA-----LPHMKKQGWGGRIINIASVH--GLVAS----- 147 (258)
T ss_pred CCCEEEECCCEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHC-----CCCCCCCCCCCEEEEEEEEC--CCCCC-----
T ss_conf 8874884464014176547786678737302168889999750-----64321378553799710100--00035-----
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCC---CCCCCCCCCCCCCCCCCC---CCCCCC----CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2222222222333221000000123---332222222222222333---222222----222222222222222222222
Q gi|254780920|r 148 DMPYNPSSPYSATKASSDYLVLAWG---HTYGIPVLLSNCSNNYGP---YHFPEK----LIPLAITRMIEGSHVFLYGDG 217 (358)
Q Consensus 148 ~~~~~p~s~Yg~sK~~~E~~~~~~~---~~~~l~~~ilR~~~vyGp---~~~~~~----~i~~~i~~~~~g~~~~i~g~g 217 (358)
T Consensus 148 --p~--KSAYVAAKHG~~GLTKv~ALE~A~~giT~NaiCPGYV~TPLV~~Qi~DqAk~rGi~e--E~V~--~~VmL--~~ 217 (258)
T TIGR01963 148 --PF--KSAYVAAKHGLIGLTKVLALEVAAHGITANAICPGYVRTPLVEKQIADQAKTRGIPE--EQVI--REVML--KK 217 (258)
T ss_pred --CC--HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCH--HHHH--HHHCC--CC
T ss_conf --32--134567743021211555542047887586672875675546765899986518899--8888--98607--88
Q ss_pred CCCCCCCCCCCCCCCEE-ECCCCC--CCCCCCCCCCC
Q ss_conf 33221133222200000-001222--22221113578
Q gi|254780920|r 218 QNVRDWLYVEDHVRALY-LVLKKG--RIGERYNIGGN 251 (358)
Q Consensus 218 ~~~Rdfi~v~D~a~~i~-~~~~~~--~~~~~fNigs~ 251 (358)
T Consensus 218 ~P~k~F~~~~e~A~~a~fLaS~~A~~~TG~~~~~DGG 254 (258)
T TIGR01963 218 QPTKRFVTVDEVAETALFLASDAAAGITGQAIVLDGG 254 (258)
T ss_pred CCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEEECCC
T ss_conf 8984113799999999984173442366207886484