HHsearch alignment for GI: 254780920 and conserved domain: TIGR02197

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase; InterPro: IPR011912 Lipopolysaccharides (LPS) are glycolipids that consitutes the outer monolayer of the outer membranes of most Gram-negative bacteria . They consist of lipid A (endotoxin) which anchors LPS to the outer membrane, a non-repeating core oligosachharide, and an immunogenic O-antigen repeat polymer, which is an oligosaccharide of 1-40 units that variesbetween different strains of bacteria. Although the O-antigen and most of the core domain are not necessary for growth in the lab, they appear to help bacteria resist environmental stresses including the complement system and antibiotics. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of LPS in Gram-negative bacteria . This enzyme is homologous to UDP-glucose 4-epimerase (IPR005886 from INTERPRO) and belongs to the NAD dependent epimerase/dehydratase family. It participates in the biosynthetic pathway leading to incorporation of heptose, a conserved sugar, into the core region of LPS, performing the reaction shown below: ADP-D-glycero-D-manno-heptose = ADP-L-glycero-D-manno-heptose It is a homopentameric enzyme with each monomer composed of two domains: an N-terminal modified Rossman fold domain for NADP binding, and a C-terminal substrate binding domain.; GO: 0008712 ADP-glyceromanno-heptose 6-epimerase activity, 0050661 NADP binding, 0005975 carbohydrate metabolic process.
Probab=100.00  E-value=0  Score=362.73  Aligned_cols=311  Identities=24%  Similarity=0.283  Sum_probs=242.3

Q ss_pred             EEEECCCCHHHHHHHHHHHHHC-CCEEEEEECCCC-----CCCHHHHHHHHCCCCE--EEEECCCCCHHHHHHHHHH---
Q ss_conf             8997678827799999999868-987999947887-----6585677762037974--9997638899999999862---
Q gi|254780920|r    3 LIVTGGAGFIGSALCRYLVNDL-KIQVLVIDKLTY-----AGNLNSLKEISQSNLF--SFLQVDICDRECIRSALKE---   71 (358)
Q Consensus         3 ILItG~tGfIGs~l~~~Ll~~~-~~~V~~~d~~~~-----~~~~~~~~~~~~~~~v--~~i~~Di~d~~~l~~~~~~---   71 (358)
T Consensus         1 IiVTGGAGFIGSNlv~~LN~~gP~~dI~vvD~L~~~~~F~ng~~~slg~~kk~~Nl~~~~I~d~i~k~~~~~~l~~~~~~   80 (353)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGPETDILVVDNLRDDATFENGNPQSLGHFKKFLNLADLEIADYIDKDDLLDRLEKGSEA   80 (353)
T ss_pred             CEECCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCC
T ss_conf             95506763689999999964389542888740787552467774322342443255541121335885469999830201


Q ss_pred             -CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC-C
Q ss_conf             -27871785123433222222222222222222202478886512322112478427863055431122222222222-2
Q gi|254780920|r   72 -FQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQDKKDQFRFLQISTDEVYGSLDKGLFSED-M  149 (358)
Q Consensus        72 -~~~d~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nil~~~~~~~~~~~~~~~~~~~~v~~SS~~vYg~~~~~~~~E~-~  149 (358)
T Consensus        81 ~~~~~avfH~GAcS~TT--e~D~~~~m~nN~~ys~~Ll~~c~~----------~~~~~IYASSAatYG~~~~-~f~~~~~  147 (353)
T TIGR02197        81 LGKIEAVFHQGACSDTT--ETDGEYMMENNYQYSKRLLDWCAE----------KGVPFIYASSAATYGDGEA-GFREDRE  147 (353)
T ss_pred             CCCCCEEEECCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH----------CCCCEEEECCHHHCCCCCC-CCCCCCC
T ss_conf             38833799733125358--862799998899999999999996----------4898688503121076877-7776656


Q ss_pred             -----CCCCCCCCCCCCCCCEEEECCCC---CCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCC--
Q ss_conf             -----22222222333221000000123---332222222222222333222222----2222222222222222222--
Q gi|254780920|r  150 -----PYNPSSPYSATKASSDYLVLAWG---HTYGIPVLLSNCSNNYGPYHFPEK----LIPLAITRMIEGSHVFLYG--  215 (358)
Q Consensus       150 -----~~~p~s~Yg~sK~~~E~~~~~~~---~~~~l~~~ilR~~~vyGp~~~~~~----~i~~~i~~~~~g~~~~i~g--  215 (358)
T Consensus       148 ~e~L~kLrPlN~YGySK~lFD~~v~~~~~~~~~~~~q~~GLrYFNVYGP~E~HKG~MASv~f~~~~q~~~~~~v~LF~~~  227 (353)
T TIGR02197       148 LEELQKLRPLNVYGYSKFLFDQYVRRRVLPGEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSH  227 (353)
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             58897518788612216789899999860124798642410211346888675443699999988899737882023566


Q ss_pred             -----CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCC----CCCCCCCCEEECC
Q ss_conf             -----223322113322220000000122222221113578642026889999886034-265----5568643023348
Q gi|254780920|r  216 -----DGQNVRDWLYVEDHVRALYLVLKKGRIGERYNIGGNNERKNIDIVFEIGFLLDA-LIP----KSYSHTELIRFIE  285 (358)
Q Consensus       216 -----~g~~~Rdfi~v~D~a~~i~~~~~~~~~~~~fNigs~~~~s~~e~~~~i~~~~~~-~~~----~~~~~~~~~~~~~  285 (358)
T Consensus       228 ~~~~~dGeQ~RDFVYV~DV~~~n~~~~~~~~~SGifN~GtG~ArsF~dla~a~~~~~~~~~~~~LSl~~lv~~~~i~Yi~  307 (353)
T TIGR02197       228 KEGFKDGEQLRDFVYVKDVVKVNLWLLENPSKSGIFNVGTGKARSFNDLADAVFKALGTNKGEPLSLKELVEDFKIEYID  307 (353)
T ss_pred             CCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCEEC
T ss_conf             85898878110115527699999999848898415644778886689999999998731468885779887306720102


Q ss_pred             C----CCCCCCEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             8----9986530031718999981896610899999999999988
Q gi|254780920|r  286 D----RPGHDRRYAIDSSKIKSEIGWFPQENMESGLNKTVCWYLD  326 (358)
Q Consensus       286 ~----~~~~~~~~~~d~~K~~~~Lgw~p~~~l~egi~~~i~w~~~  326 (358)
T Consensus       308 ~Pe~lrg~YQ~fTqAd~~~lr~aGy~~~~~~LeeGV~dY~~~~~~  352 (353)
T TIGR02197       308 MPEALRGKYQYFTQADIDKLREAGYYKPFTTLEEGVKDYVQWLLA  352 (353)
T ss_pred             CCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             835740005740166489999732787673488999999999860