HHsearch alignment for GI: 254780920 and conserved domain: TIGR02197
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase; InterPro: IPR011912 Lipopolysaccharides (LPS) are glycolipids that consitutes the outer monolayer of the outer membranes of most Gram-negative bacteria . They consist of lipid A (endotoxin) which anchors LPS to the outer membrane, a non-repeating core oligosachharide, and an immunogenic O-antigen repeat polymer, which is an oligosaccharide of 1-40 units that variesbetween different strains of bacteria. Although the O-antigen and most of the core domain are not necessary for growth in the lab, they appear to help bacteria resist environmental stresses including the complement system and antibiotics. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of LPS in Gram-negative bacteria . This enzyme is homologous to UDP-glucose 4-epimerase (IPR005886 from INTERPRO) and belongs to the NAD dependent epimerase/dehydratase family. It participates in the biosynthetic pathway leading to incorporation of heptose, a conserved sugar, into the core region of LPS, performing the reaction shown below: ADP-D-glycero-D-manno-heptose = ADP-L-glycero-D-manno-heptose It is a homopentameric enzyme with each monomer composed of two domains: an N-terminal modified Rossman fold domain for NADP binding, and a C-terminal substrate binding domain.; GO: 0008712 ADP-glyceromanno-heptose 6-epimerase activity, 0050661 NADP binding, 0005975 carbohydrate metabolic process.
Probab=100.00 E-value=0 Score=362.73 Aligned_cols=311 Identities=24% Similarity=0.283 Sum_probs=242.3
Q ss_pred EEEECCCCHHHHHHHHHHHHHC-CCEEEEEECCCC-----CCCHHHHHHHHCCCCE--EEEECCCCCHHHHHHHHHH---
Q ss_conf 8997678827799999999868-987999947887-----6585677762037974--9997638899999999862---
Q gi|254780920|r 3 LIVTGGAGFIGSALCRYLVNDL-KIQVLVIDKLTY-----AGNLNSLKEISQSNLF--SFLQVDICDRECIRSALKE--- 71 (358)
Q Consensus 3 ILItG~tGfIGs~l~~~Ll~~~-~~~V~~~d~~~~-----~~~~~~~~~~~~~~~v--~~i~~Di~d~~~l~~~~~~--- 71 (358)
T Consensus 1 IiVTGGAGFIGSNlv~~LN~~gP~~dI~vvD~L~~~~~F~ng~~~slg~~kk~~Nl~~~~I~d~i~k~~~~~~l~~~~~~ 80 (353)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGPETDILVVDNLRDDATFENGNPQSLGHFKKFLNLADLEIADYIDKDDLLDRLEKGSEA 80 (353)
T ss_pred CEECCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCC
T ss_conf 95506763689999999964389542888740787552467774322342443255541121335885469999830201
Q ss_pred -CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC-C
Q ss_conf -27871785123433222222222222222222202478886512322112478427863055431122222222222-2
Q gi|254780920|r 72 -FQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQDKKDQFRFLQISTDEVYGSLDKGLFSED-M 149 (358)
Q Consensus 72 -~~~d~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nil~~~~~~~~~~~~~~~~~~~~v~~SS~~vYg~~~~~~~~E~-~ 149 (358)
T Consensus 81 ~~~~~avfH~GAcS~TT--e~D~~~~m~nN~~ys~~Ll~~c~~----------~~~~~IYASSAatYG~~~~-~f~~~~~ 147 (353)
T TIGR02197 81 LGKIEAVFHQGACSDTT--ETDGEYMMENNYQYSKRLLDWCAE----------KGVPFIYASSAATYGDGEA-GFREDRE 147 (353)
T ss_pred CCCCCEEEECCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH----------CCCCEEEECCHHHCCCCCC-CCCCCCC
T ss_conf 38833799733125358--862799998899999999999996----------4898688503121076877-7776656
Q ss_pred -----CCCCCCCCCCCCCCCEEEECCCC---CCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCC--
Q ss_conf -----22222222333221000000123---332222222222222333222222----2222222222222222222--
Q gi|254780920|r 150 -----PYNPSSPYSATKASSDYLVLAWG---HTYGIPVLLSNCSNNYGPYHFPEK----LIPLAITRMIEGSHVFLYG-- 215 (358)
Q Consensus 150 -----~~~p~s~Yg~sK~~~E~~~~~~~---~~~~l~~~ilR~~~vyGp~~~~~~----~i~~~i~~~~~g~~~~i~g-- 215 (358)
T Consensus 148 ~e~L~kLrPlN~YGySK~lFD~~v~~~~~~~~~~~~q~~GLrYFNVYGP~E~HKG~MASv~f~~~~q~~~~~~v~LF~~~ 227 (353)
T TIGR02197 148 LEELQKLRPLNVYGYSKFLFDQYVRRRVLPGEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSH 227 (353)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 58897518788612216789899999860124798642410211346888675443699999988899737882023566
Q ss_pred -----CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCC----CCCCCCCCEEECC
Q ss_conf -----223322113322220000000122222221113578642026889999886034-265----5568643023348
Q gi|254780920|r 216 -----DGQNVRDWLYVEDHVRALYLVLKKGRIGERYNIGGNNERKNIDIVFEIGFLLDA-LIP----KSYSHTELIRFIE 285 (358)
Q Consensus 216 -----~g~~~Rdfi~v~D~a~~i~~~~~~~~~~~~fNigs~~~~s~~e~~~~i~~~~~~-~~~----~~~~~~~~~~~~~ 285 (358)
T Consensus 228 ~~~~~dGeQ~RDFVYV~DV~~~n~~~~~~~~~SGifN~GtG~ArsF~dla~a~~~~~~~~~~~~LSl~~lv~~~~i~Yi~ 307 (353)
T TIGR02197 228 KEGFKDGEQLRDFVYVKDVVKVNLWLLENPSKSGIFNVGTGKARSFNDLADAVFKALGTNKGEPLSLKELVEDFKIEYID 307 (353)
T ss_pred CCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCEEC
T ss_conf 85898878110115527699999999848898415644778886689999999998731468885779887306720102
Q ss_pred C----CCCCCCEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8----9986530031718999981896610899999999999988
Q gi|254780920|r 286 D----RPGHDRRYAIDSSKIKSEIGWFPQENMESGLNKTVCWYLD 326 (358)
Q Consensus 286 ~----~~~~~~~~~~d~~K~~~~Lgw~p~~~l~egi~~~i~w~~~ 326 (358)
T Consensus 308 ~Pe~lrg~YQ~fTqAd~~~lr~aGy~~~~~~LeeGV~dY~~~~~~ 352 (353)
T TIGR02197 308 MPEALRGKYQYFTQADIDKLREAGYYKPFTTLEEGVKDYVQWLLA 352 (353)
T ss_pred CCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 835740005740166489999732787673488999999999860