HHsearch alignment for GI: 254780920 and conserved domain: TIGR02813
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA; InterPro: IPR004432 Members of this entry represent PfaA, which is involved in omega-3 polyunsaturated fatty acid biosynthesis, for example PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is found together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologues of PfaA, also included in this entry, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis; an alternative to the more familiar iterated mechanism of chain extension and desaturation, and like PfaA the more distant homologues are likewise found near genes for homologues of PfaB, PfaC, and/or PfaD..
Probab=95.01 E-value=0.14 Score=28.88 Aligned_cols=178 Identities=20% Similarity=0.254 Sum_probs=104.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCC----------CC--HHHHH-------------------------
Q ss_conf 489976788277999999998689879999478876----------58--56777-------------------------
Q gi|254780920|r 2 RLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYA----------GN--LNSLK------------------------- 44 (358)
Q Consensus 2 kILItG~tGfIGs~l~~~Ll~~~~~~V~~~d~~~~~----------~~--~~~~~------------------------- 44 (358)
T Consensus 2161 ~~LV~GGAKGVT~~C~l~lAK~~~a~FiL~GRS~~~~~~~~P~WA~G~s~~~~LK~AA~~~l~~~GeKPTP~~V~~lv~P 2240 (2773)
T TIGR02813 2161 KVLVTGGAKGVTFECALELAKQCQAHFILAGRSSHIADDELPSWAQGKSDENELKKAAIQHLQASGEKPTPKKVDALVKP 2240 (2773)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHCCCEEEECCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 17883787622599999998753211455033045552068741046503567899999999863899885225866412
Q ss_pred ------------HHH-CCCCEEEEECCCCCHHHHHHHHHH---------CCCCEEEEECCCCCCCCCCCC-----CCCCC
Q ss_conf ------------620-379749997638899999999862---------278717851234332222222-----22222
Q gi|254780920|r 45 ------------EIS-QSNLFSFLQVDICDRECIRSALKE---------FQPDAIVNFAAESHVDRSILG-----ADEFI 97 (358)
Q Consensus 45 ------------~~~-~~~~v~~i~~Di~d~~~l~~~~~~---------~~~d~ViHlAa~~~~~~~~~~-----p~~~~ 97 (358)
T Consensus 2241 V~s~~EI~~aLaA~~a~Ga~A~Y~s~DV~~s~sva~~~~~~~~~~g~gsl~iTGiIHGAGVL-ADK~I~~KTL~E~~~VY 2319 (2773)
T TIGR02813 2241 VLSSLEIAQALAAFKAVGASAEYLSVDVTDSVSVAATVAPLNKLLGQGSLDITGIIHGAGVL-ADKHIQDKTLEEFNAVY 2319 (2773)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHH-HHHHHHHHHHHHHHHHH
T ss_conf 35457899999999851887147886048847899999999986168762100366441134-23445340178775352
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 22222220247888651232211247842786305543-11222222222222222222223332210000001233322
Q gi|254780920|r 98 TTNIIGTFILLEETRLWWSCLSQDKKDQFRFLQISTDE-VYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLAWGHTYG 176 (358)
Q Consensus 98 ~~Nv~gt~nil~~~~~~~~~~~~~~~~~~~~v~~SS~~-vYg~~~~~~~~E~~~~~p~s~Yg~sK~~~E~~~~~~~~~~~ 176 (358)
T Consensus 2320 gTKv~GL~~lL~a~~---------~~~~K~~~lFSSAAGFYGN~GQ------------SDYa~sNdILNKaAl~l~~--~ 2376 (2773)
T TIGR02813 2320 GTKVDGLESLLAALN---------AEKIKLVALFSSAAGFYGNTGQ------------SDYAMSNDILNKAALQLKA--R 2376 (2773)
T ss_pred CCHHHHHHHHHHHHC---------HHCCCEEEEEECCCCCCCCCCC------------CHHHHHHHHHHHHHHHHHH--H
T ss_conf 001688999997514---------3106577875110245788885------------3177888888899999986--1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 222222222223332222222222222222
Q gi|254780920|r 177 IPVLLSNCSNNYGPYHFPEKLIPLAITRMI 206 (358)
Q Consensus 177 l~~~ilR~~~vyGp~~~~~~~i~~~i~~~~ 206 (358)
T Consensus 2377 ~P~A~V-~SF~WGPWDG--GMV~p~LKkMF 2403 (2773)
T TIGR02813 2377 NPEAKV-LSFNWGPWDG--GMVNPALKKMF 2403 (2773)
T ss_pred CCCCEE-EECCCCCCCC--CCCCHHHHHHH
T ss_conf 997338-7314788887--62276787443